BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041105
(403 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 244 bits (623), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 153/370 (41%), Positives = 215/370 (58%), Gaps = 26/370 (7%)
Query: 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIG---RLNPLLRGVIEVNPDAINQADKA 92
F E + DLQ +L S L + Y++ I R P LR VIE+NPDA+ +A A
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 93 DQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAG 152
+++R+ + R + LHGIP+L+KDNI M T+AGS AL G P DA++V +L +AG
Sbjct: 64 ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 153 AIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVS 212
A++LGK ++SEWA+FR +S +GW AR GQ +NPY +S PC N+ +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
+GT+TD SI+CP+ N VVG+KPTVGL+SRDG+IP+S DT GP++++VAD VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 273 VGFDAKDEATREASKYIPPG----GYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAF 328
G D D AT PG Y L P GL+GKR+G+++ + +
Sbjct: 242 AGRDDADPATATM-----PGRAVYDYTARLDPQGLRGKRIGLLQ---TPLLKYRGMPPLI 293
Query: 329 EHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVR 388
E LR+ GA+++ E+ N A A E +L EFK L Y +P+R
Sbjct: 294 EQAATELRRAGAVVV-PVELPNQGA----WAEAER-TLLLYEFKAGLERYFNTH-RAPLR 346
Query: 389 SLADVIAFNK 398
SLAD+IAFN+
Sbjct: 347 SLADLIAFNQ 356
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 154/311 (49%), Gaps = 27/311 (8%)
Query: 42 TIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIE-VNPDAINQADKADQERKAKA 100
++ +L+ K+ +++ +++VE + + ++ I + A+ QA+ +ER
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESL-KER---- 60
Query: 101 PRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKAS 160
+L L GIPI VKDNI + + TT S L V P DA V+ +L +AGA+I+GK +
Sbjct: 61 ---ELPLFGIPIAVKDNILVEGE-KTTCASKILENFVAPYDATVIERLKKAGALIVGKTN 116
Query: 161 MSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTDAS 220
+ E+A + E + KNP+ L P VSLG+DT S
Sbjct: 117 LDEFAMGSSTEYSAFFPT-----KNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171
Query: 221 ILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDE 280
I P+ V+GIKPT G +SR G++ + LD +G + D VL+ I G+D KD
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDS 231
Query: 281 ATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGA 340
+ + +P + + +K ++G ++G+ + + + +V EAFE+ ++ L ++G
Sbjct: 232 TSAK----VPVPEWSEEVKKE-VKGLKIGLPKEF-FEYELQPQVKEAFENFIKELEKEG- 284
Query: 341 ILLDNFEINNL 351
FEI +
Sbjct: 285 -----FEIKEV 290
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 143/308 (46%), Gaps = 34/308 (11%)
Query: 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQ 94
+ ++ TIE+ K ++ +L ++ + I RL+P ++ I V +
Sbjct: 3 DLDFRKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSV 52
Query: 95 ERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAI 154
E+K K GIP+ +KDNI T M TT S L DA VV K+ EAG +
Sbjct: 53 EKKGK-------FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFV 104
Query: 155 ILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLG 214
++GKA++ E+A + E + R NP+ L P MV +LG
Sbjct: 105 VVGKANLDEFAMGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGMVVAALG 159
Query: 215 TDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVG 274
+DT S+ P+ VVG KPT GL+SR G++ + LD +GPI+KTV D +++ I G
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISG 219
Query: 275 FDAKDEATREASKYIPPGGYKQFLK--PHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
D D T ++ + FL G+ G + + + + I V+E FE +
Sbjct: 220 RDENDATT--VNRKV------DFLSEIEEGVSGMKFAVPEEIYEH-DIEEGVSERFEEAL 270
Query: 333 RTLRQQGA 340
+ L + GA
Sbjct: 271 KLLERLGA 278
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 157/311 (50%), Gaps = 21/311 (6%)
Query: 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQ 94
S++ ++E+L K ++ +V+ I +P ++ + ++ + AI +A + D
Sbjct: 1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD- 59
Query: 95 ERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAI 154
E +AK + L GIP+ +KDNI T + + TT S L G V ++ V+ KL + A+
Sbjct: 60 ELQAK-DQMDGKLFGIPMGIKDNIIT-NGLETTCASKMLEGFVPIYESTVMEKLHKENAV 117
Query: 155 ILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLG 214
++GK +M E+A + E+ + +T NP+ A P +V +SLG
Sbjct: 118 LIGKLNMDEFAMGGSTET--SYFKKT---VNPFDHKAVPGGSSGGSAAAVAAGLVPLSLG 172
Query: 215 TDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVG 274
+DT SI P+ VVG+KPT G +SR G++ + LD +GP+++ V D VL+AI G
Sbjct: 173 SDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISG 232
Query: 275 FDAKDEATREASKYIPPGGYKQFLKPHG--LQGKRLGIVRN-LGSNFTISSEVTEAFEHH 331
D D + P F G ++G ++ + + LG ++ +V EA ++
Sbjct: 233 ADVNDSTS-------APVDDVDFTSEIGKDIKGLKVALPKEYLGEG--VADDVKEAVQNA 283
Query: 332 VRTLRQQGAIL 342
V TL+ GA++
Sbjct: 284 VETLKSLGAVV 294
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 25/289 (8%)
Query: 52 QNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIP 111
+ +++ ++ + Y++ + L+P L + +N + +A+ D L L G+
Sbjct: 12 RGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVD---------PGLPLAGLV 62
Query: 112 ILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFE 171
+ VKDNIAT+ + TTAGS L V P +A V +L GA++LGK ++ E+ + E
Sbjct: 63 VAVKDNIATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTE 121
Query: 172 SPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTDASILCPSGSNSVV 231
+ KNP+ P ++ ++LG+DT S+ P+ V
Sbjct: 122 HSAFFPT-----KNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVY 176
Query: 232 GIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPP 291
G+KPT G +SR G+I + LD +GP++++V D ++DA G D D + + +PP
Sbjct: 177 GLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLD----LPP 232
Query: 292 GGYKQFLKPHGLQGKRLGIVRN-LGSNFTISSEVTEAFEHHVRTLRQQG 339
+ P L RLG+VR L N S V A E ++ R+ G
Sbjct: 233 RFQEALEGP--LPPLRLGVVREALAGN---SPGVERALEEALKVFRELG 276
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 139/308 (45%), Gaps = 34/308 (11%)
Query: 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQ 94
+ ++ TIE+ K ++ +L ++ + I RL+P ++ I V +
Sbjct: 4 DLDFRKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSV 53
Query: 95 ERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAI 154
E+K K GIP+ +KDNI T TT S L DA VV K EAG +
Sbjct: 54 EKKGK-------FWGIPVAIKDNILTLG-XRTTCASRILENYESVFDATVVKKXKEAGFV 105
Query: 155 ILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLG 214
++GKA++ E+A + E + R NP+ L P V +LG
Sbjct: 106 VVGKANLDEFAXGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGXVVAALG 160
Query: 215 TDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVG 274
+DT S+ P+ VVG KPT GL+SR G++ + LD +GPI+KTV D + + I G
Sbjct: 161 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISG 220
Query: 275 FDAKDEATREASKYIPPGGYKQFLK--PHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
D D T ++ + FL G+ G + + + + I V+E FE +
Sbjct: 221 RDENDATT--VNRKV------DFLSEIEEGVSGXKFAVPEEIYEH-DIEEGVSERFEEAL 271
Query: 333 RTLRQQGA 340
+ L + GA
Sbjct: 272 KLLERLGA 279
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 86/168 (51%), Gaps = 7/168 (4%)
Query: 107 LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAH 166
LHG+P+ VKD K M T AG+ A L +P +A V +L EAGA++ K + E A
Sbjct: 65 LHGLPLTVKDLFPVKG-MPTRAGTKAPL-PPLPEEARAVRRLREAGALLFAKTNXHEIAL 122
Query: 167 FRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTDASILCPSG 226
T E+P W TG +N S + SLGTDT SI P+G
Sbjct: 123 GITGENP--W---TGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAG 177
Query: 227 SNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVG 274
N VVG KP+ G +S +G +P+S D GP++++V D ++ + + G
Sbjct: 178 FNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAG 225
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 113/263 (42%), Gaps = 22/263 (8%)
Query: 101 PRSQLGLHGIPILVKDNI--ATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGK 158
P S L G + +KDN+ A MN GS + G RDA VVT+LL AGA + GK
Sbjct: 82 PTSDGVLTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGK 138
Query: 159 ASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTD 218
A + S + + +G +NP+ + V ++G D
Sbjct: 139 AVCEDLCF-----SGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQG 193
Query: 219 ASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAK 278
SI P+ VVG KPT GL+ G P+ +D +GPI++TV D +L I G D
Sbjct: 194 GSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGN 253
Query: 279 DEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQ 338
D R+A + G Y L + G R+GIVR + EV +A +L +
Sbjct: 254 DP--RQADS-VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEI 309
Query: 339 GAIL--------LDNFEINNLEA 353
G + L F I N+ A
Sbjct: 310 GCTVEEVNIPWHLHAFHIWNVIA 332
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 113/263 (42%), Gaps = 22/263 (8%)
Query: 101 PRSQLGLHGIPILVKDNI--ATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGK 158
P S L G + +KDN+ A MN GS + G RDA VVT+LL AGA + GK
Sbjct: 82 PTSDGVLTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGK 138
Query: 159 ASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTD 218
A + S + + +G +NP+ + V ++G D
Sbjct: 139 AVCEDLCF-----SGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQG 193
Query: 219 ASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAK 278
+I P+ VVG KPT GL+ G P+ +D +GPI++TV D +L I G D
Sbjct: 194 GAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGN 253
Query: 279 DEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQ 338
D R+A + G Y L + G R+GIVR + EV +A +L +
Sbjct: 254 DP--RQADS-VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEI 309
Query: 339 GAIL--------LDNFEINNLEA 353
G + L F I N+ A
Sbjct: 310 GCTVEEVNIPWHLHAFHIWNVIA 332
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 100 APRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVP-RDAFVVTKLLEAGAIILGK 158
+P + L+G+P VKDNI + +A A + P RDA VV +L AGAI+LGK
Sbjct: 88 SPATGKPLYGVPFAVKDNIDVA-GLPCSAACPAF--TYEPDRDATVVARLRAAGAIVLGK 144
Query: 159 ASMSEWAH-FRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ ++A SP G A Y+ +VA SLGTDT
Sbjct: 145 TNLDQFATGLVGTRSPFG--APRCVFDQDYISGG----SSSGSAVAVAAGLVAFSLGTDT 198
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDA 277
S P+ N++VG+KPT GL+S GV+P LD V + +VA+ + G+DA
Sbjct: 199 AGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRIAEGYDA 258
Query: 278 KDEATREASK 287
D +R + K
Sbjct: 259 ADPYSRPSQK 268
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 22/235 (9%)
Query: 51 KQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERK-AKAPRSQLGLHG 109
+ +++ +L+E I + +NP E+N I +KA +E + A P G
Sbjct: 18 RSGEISRTELLEATIAHVQAVNP------EINAVIIPLFEKARRESELASGP-----FAG 66
Query: 110 IPILVKD-NIATKDKMNTTA-GSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHF 167
+P L+KD + ++ +NT++ G DA+ V ++ AG ++LGK + E +
Sbjct: 67 VPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126
Query: 168 RTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTDASILCPSGS 227
T E P W G +NP+ L + V+ G D S+ P+
Sbjct: 127 VTTE-PEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASV 181
Query: 228 NSVVGIKPTVGLISRDGVIPVSPRLDTV---GPISKTVADTVYVLDAIVGFDAKD 279
VVG+KPT G IS ++ S + G +++V D +LD + G D
Sbjct: 182 CGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGD 236
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 22/235 (9%)
Query: 51 KQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERK-AKAPRSQLGLHG 109
+ +++ +L+E I + +NP E+N I +KA +E + A P G
Sbjct: 18 RSGEISRTELLEATIAHVQAVNP------EINAVIIPLFEKARRESELASGP-----FAG 66
Query: 110 IPILVKD-NIATKDKMNTTA-GSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHF 167
+P L+KD + ++ +NT++ G DA+ V ++ AG ++LGK + E +
Sbjct: 67 VPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQ 126
Query: 168 RTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDTDASILCPSGS 227
T E P W G +NP+ L + V+ G D ++ P+
Sbjct: 127 VTTE-PEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASV 181
Query: 228 NSVVGIKPTVGLISRDGVIPVSPRLDTV---GPISKTVADTVYVLDAIVGFDAKD 279
VVG+KPT G IS ++ S + G +++V D +LD + G D
Sbjct: 182 CGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGD 236
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSAGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGASSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGASSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T ++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + +KD I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
G T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 96 RKAKAPRSQLG--LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGA 153
R K+ R+Q L GI + + D I T + M T GS G DA VV L AGA
Sbjct: 41 RHDKSARAQASGPLRGIAVGIADIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGA 99
Query: 154 IILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSL 213
I+GK + + +A P NP+ P M+ ++L
Sbjct: 100 TIIGKTTTTAFAS----RDPTATL-------NPHNTGHSPGGSSSGSAAAVGAGMIPLAL 148
Query: 214 GTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273
GT T S++ P+ IKP+ ++ GV S LDTVG D L A+
Sbjct: 149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMT 208
Query: 274 G 274
G
Sbjct: 209 G 209
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 97 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 154
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +F+ N GQ NP+ S P + LGTD
Sbjct: 155 HTNVPQ--SMLSFDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 209
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 210 GGSIRFPSAFCGICGLKPTGNRLSKSGL 237
>pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QK5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ8|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ8|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|3QJ9|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QJ9|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Inhibitor
pdb|3QKV|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
pdb|3QKV|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase With Small
Molecule Compound
Length = 587
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 134 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 191
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +F+ N GQ NP+ S P + LGTD
Sbjct: 192 HTNVPQ--SMLSFDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 246
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 247 GGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 90 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 147
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +F+ N GQ NP+ S P + LGTD
Sbjct: 148 HTNVPQ--SMLSFDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 202
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 203 GGSIRFPSAFCGICGLKPTGNRLSKSGL 230
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 116 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 173
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +F+ N GQ NP+ S P + LGTD
Sbjct: 174 HTNVPQ--SMLSFDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 228
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 229 GGSIRFPSAFCGICGLKPTGNRLSKSGL 256
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 96 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 153
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +++ N GQ NP+ S P + LGTD
Sbjct: 154 HTNVPQ--SMFSYDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 208
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 209 GGSIRFPSAFCGICGLKPTGNRLSKSGL 236
>pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
pdb|2VYA|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated
With The Drug-Like Inhibitor Pf-750
Length = 587
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 134 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 191
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +++ N GQ NP+ S P + LGTD
Sbjct: 192 HTNVPQ--SMFSYDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 246
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 247 GGSIRFPSAFCGICGLKPTGNRLSKSGL 274
>pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ1|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|2WJ2|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With
7-Phenyl-1-(5-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One,
An Alpha-Ketooxazole
pdb|3K7F|A Chain A, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K7F|B Chain B, Crystal Structure Analysis Of A
PhenhexylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase'
pdb|3K83|A Chain A, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K83|B Chain B, Crystal Structure Analysis Of A
BiphenylOXAZOLECARBOXYPYRIDINE ALPHA-Ketoheterocycle
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|A Chain A, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3K84|B Chain B, Crystal Structure Analysis Of A OleylOXADIAZOLEPYRIDINE
Inhibitor Bound To A Humanized Variant Of Fatty Acid
Amide Hydrolase
pdb|3LJ6|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ6|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845 At 2.42a Resolution
pdb|3LJ7|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3LJ7|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With Carbamate Inhibitor
Urb597
pdb|3OJ8|A Chain A, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3OJ8|B Chain B, Alpha-Ketoheterocycle Inhibitors Of Fatty Acid Amide
Hydrolase Containing Additional Conformational
Contraints In The Acyl Side Chain
pdb|3PPM|A Chain A, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PPM|B Chain B, Crystal Structure Of A Noncovalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|A Chain A, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
pdb|3PR0|B Chain B, Crystal Structure Of A Covalently Bound
Alpha-Ketoheterocycle Inhibitor
(PhenhexylOXADIAZOLEPYRIDINE) TO A HUMANIZED VARIANT OF
Fatty Acid Amide Hydrolase
Length = 573
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 98 AKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
++APR L L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 120 SQAPRQGL-LYGVPVSLKECFSYKGH-DSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFV 177
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCXXXXXXXXXXXXNMVAVSLGTDT 217
++ + +++ N GQ NP+ S P + LGTD
Sbjct: 178 HTNVPQ--SMFSYDCSN---PLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDI 232
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGV 245
SI PS + G+KPT +S+ G+
Sbjct: 233 GGSIRFPSAFCGICGLKPTGNRLSKSGL 260
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 141 DAFVVTKLLEAGAI-ILGKASMSEWAHFRTFESPNGWCARTGQGKN 185
DA + K L ++ L + S W H++T + WC + + KN
Sbjct: 342 DAVIYLKALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKN 387
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 141 DAFVVTKLLEAGAI-ILGKASMSEWAHFRTFESPNGWCARTGQGKN 185
DA + K L ++ L + S W H++T + WC + + KN
Sbjct: 355 DAVIYLKALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPKN 400
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
+GT T SI P N + I+P + ++S+ VI + RL S+ D +Y+
Sbjct: 200 VGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERL------SEQNLDKIYISSQD 253
Query: 273 VGFDAKDEATRE 284
D KD++ E
Sbjct: 254 FLADMKDKSYEE 265
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
G D K+ TR Y + L G QG+ G NLG+ + + + A EHH
Sbjct: 191 FGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACG---NLGNTYYLLGDFQAAIEHHQ 247
Query: 333 RTLR 336
LR
Sbjct: 248 ERLR 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,373,610
Number of Sequences: 62578
Number of extensions: 405801
Number of successful extensions: 930
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 35
length of query: 403
length of database: 14,973,337
effective HSP length: 101
effective length of query: 302
effective length of database: 8,652,959
effective search space: 2613193618
effective search space used: 2613193618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)