Query 041105
Match_columns 403
No_of_seqs 249 out of 1791
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m22_A Peptide amidase, PAM; e 100.0 2.8E-85 9.7E-90 684.0 32.2 354 32-400 2-358 (503)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 3.2E-84 1.1E-88 673.3 31.3 339 37-395 2-344 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1.2E-81 4.2E-86 652.4 25.8 332 38-395 2-337 (478)
4 2dc0_A Probable amidase; struc 100.0 1.3E-80 4.5E-85 637.9 27.2 302 41-382 1-304 (434)
5 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 1.3E-80 4.4E-85 643.5 23.4 310 41-380 1-311 (471)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 3.5E-79 1.2E-83 636.7 24.7 319 35-382 3-331 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 5.9E-79 2E-83 632.5 19.1 310 34-380 3-313 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 5E-76 1.7E-80 620.3 21.0 296 36-356 66-367 (573)
9 1o9p_A Malonamidase E2; malona 100.0 8.8E-75 3E-79 591.4 25.2 289 41-382 2-292 (414)
10 3a1k_A Amidase; AS family enzy 100.0 2.4E-75 8.2E-80 610.9 5.4 302 39-354 11-324 (521)
11 3shg_B VBHA; ampylation, adeny 48.8 22 0.00076 25.7 4.1 27 44-70 33-59 (61)
12 1zrj_A E1B-55KDA-associated pr 32.1 33 0.0011 23.7 2.8 40 32-71 4-43 (50)
13 2do1_A Nuclear protein HCC-1; 29.7 26 0.0009 24.8 2.0 39 32-70 4-42 (55)
No 1
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=2.8e-85 Score=684.00 Aligned_cols=354 Identities=45% Similarity=0.729 Sum_probs=313.9
Q ss_pred CCcccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHC---CCccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCC
Q 041105 32 ESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN---PLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLH 108 (403)
Q Consensus 32 ~~~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~ 108 (403)
.+..|++.++++.+|+++|++|++|++||+++||+||+++| +.+|||++++++|+++|+++|+++ ++|+.+||||
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~ 79 (503)
T 1m22_A 2 RNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLH 79 (503)
T ss_dssp ---CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTT
T ss_pred CCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcC
Confidence 35668899999999999999999999999999999999999 899999999988999999999988 7888899999
Q ss_pred CCceeecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCC
Q 041105 109 GIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYV 188 (403)
Q Consensus 109 GvPi~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~ 188 (403)
||||+|||||+++| ++||+||..+.++++ +||++|+|||+||||++||||||||+++.+..+..|+|++||+|+||||
T Consensus 80 GvPi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~ 157 (503)
T 1m22_A 80 GIPLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYR 157 (503)
T ss_dssp TCEEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTS
T ss_pred CceeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999996 999999999999999 9999999999999999999999999986555567899999999999999
Q ss_pred CCCCCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHH
Q 041105 189 LSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYV 268 (403)
Q Consensus 189 ~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~ 268 (403)
+.|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++
T Consensus 158 ~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~ 237 (503)
T 1m22_A 158 ISHSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAV 237 (503)
T ss_dssp TTBCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCC
Q 041105 269 LDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEI 348 (403)
Q Consensus 269 ~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~ 348 (403)
+++|.|+|++|+.+...+. .+..+|...+....++++||||+.+++ . .+|+++++++++++.|+++||+|++ +++
T Consensus 238 l~vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~ 312 (503)
T 1m22_A 238 LTAIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VEL 312 (503)
T ss_dssp HHHHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECC
T ss_pred HHHHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCC
Confidence 9999999999976543211 011246555543457899999998754 2 7899999999999999999999997 788
Q ss_pred CCHHHHHHhhhcccchhccHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhC
Q 041105 349 NNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMF 400 (403)
Q Consensus 349 p~~~~~~~~~~~~~~~~~~~~e~~~~l~~yl~~~~~~~~~sl~~~i~~~~~~ 400 (403)
|.++++... ++.++ .+|+..++..|+.... .+++++++++.+++.+
T Consensus 313 p~~~~~~~~----~~~~~-~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 358 (503)
T 1m22_A 313 PNQGAWAEA----ERTLL-LYEFKAGLERYFNTHR-APLRSLADLIAFNQAH 358 (503)
T ss_dssp TTTTTTHHH----HHHHH-HHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHT
T ss_pred CcHHHHHHH----HHHHH-HHHHHHHHHHHHHhcC-cccccHHHHHHHhhhc
Confidence 875533221 34555 7899999999998875 4578999999888655
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=3.2e-84 Score=673.30 Aligned_cols=339 Identities=28% Similarity=0.427 Sum_probs=298.6
Q ss_pred ccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeec
Q 041105 37 SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVK 115 (403)
Q Consensus 37 ~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vK 115 (403)
++.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++. ++|+. ||||||||+||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~-~~g~~-gpL~GvPi~vK 79 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQA-KDQMD-GKLFGIPMGIK 79 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH-TTCCC-STTTTCEEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHH-hcCCC-CCcCCCEEEEE
Confidence 577899999999999999999999999999999999999999999998 9999999998762 56777 99999999999
Q ss_pred ccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 116 DNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCG 195 (403)
Q Consensus 116 D~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GG 195 (403)
|||+++| ++||+||..+.++++.+||++|+|||++|||++||||||||++ +..++|++||+|+||||+.|+|||
T Consensus 80 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~t~n~~~G~t~NP~~~~~~pGG 153 (485)
T 3ip4_A 80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG 153 (485)
T ss_dssp TTBCBTT-BCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred cCcccCC-CccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCccccc-----CCCCCCCCCCCcCCccccCcCCCC
Confidence 9999996 9999999999999999999999999999999999999999998 677899999999999999999999
Q ss_pred CChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCC
Q 041105 196 SSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGF 275 (403)
Q Consensus 196 SSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~ 275 (403)
||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+
T Consensus 154 SSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~ 233 (485)
T 3ip4_A 154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233 (485)
T ss_dssp SSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred CccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHH
Q 041105 276 DAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAIL 355 (403)
Q Consensus 276 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~ 355 (403)
|+.|+.+... |..+|...+. ..++++||||+++++.. .++|+++++++++++.|+++||+|++ +++|.+++..
T Consensus 234 d~~d~~~~~~----~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~~~~ 306 (485)
T 3ip4_A 234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI 306 (485)
T ss_dssp CTTCTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred Cccccccccc----Cccchhhhhc-cCccCcEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHH
Confidence 9998765432 3235555444 36789999999876543 58999999999999999999999997 8998766544
Q ss_pred HhhhcccchhccHHHHHHHHHHHHhhc---CCCCCCCHHHHHH
Q 041105 356 NSIANGETLAILAAEFKQALNAYLQEL---VTSPVRSLADVIA 395 (403)
Q Consensus 356 ~~~~~~~~~~~~~~e~~~~l~~yl~~~---~~~~~~sl~~~i~ 395 (403)
.. ++.++ .+|+..++.+|.... .....+++.+++.
T Consensus 307 ~~----~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (485)
T 3ip4_A 307 PS----YYVIA-SSEASSNLSRFDGIRYGYHSKEAHSLEELYK 344 (485)
T ss_dssp HH----HHHHH-HHHHHHHTTTCSSSSSSCCCTTCCSHHHHHH
T ss_pred HH----HHHHH-HHHHHHHHHhhhhhhccccccccccHHHHHH
Confidence 32 34555 788877776653321 1122456666554
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=1.2e-81 Score=652.44 Aligned_cols=332 Identities=29% Similarity=0.448 Sum_probs=291.9
Q ss_pred cccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeecc
Q 041105 38 VKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVKD 116 (403)
Q Consensus 38 ~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vKD 116 (403)
+.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|++ +||||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 56789999999999999999999999999999999999999999998 99999987752 6899999999999
Q ss_pred cccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 117 NIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGS 196 (403)
Q Consensus 117 ~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGS 196 (403)
||+++| ++||+||..+.++++.+||++|+|||++|||++||||||||++ +..+.|++||+|+||||+.|+||||
T Consensus 74 ~~~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGS 147 (478)
T 3h0l_A 74 NILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM-----GSSTEYSAFFPTKNPWDLERVPGGS 147 (478)
T ss_dssp TBCCTT-SBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCCTTCTTBCCCSS
T ss_pred CccCCC-CCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhc-----CCCCCCCCCCCcCCCccCCCCCCcc
Confidence 999996 9999999999999999999999999999999999999999998 6778999999999999999999999
Q ss_pred ChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCCC
Q 041105 197 SSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFD 276 (403)
Q Consensus 197 SgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~d 276 (403)
|||||++||+|++++|+|||||||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.|+|
T Consensus 148 SgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d 227 (478)
T 3h0l_A 148 SGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWD 227 (478)
T ss_dssp SHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred hHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHHH
Q 041105 277 AKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILN 356 (403)
Q Consensus 277 ~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~~ 356 (403)
++|+.+... |..+|...+. ..++++||||+++++.. .++|+++++++++++.|+++||+|++ +++|.++....
T Consensus 228 ~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~~ 300 (478)
T 3h0l_A 228 EKDSTSAKV----PVPEWSEEVK-KEVKGLKIGLPKEFFEY-ELQPQVKEAFENFIKELEKEGFEIKE-VSLPHVKYSIP 300 (478)
T ss_dssp TTCTTSCCC----CCCCHHHHTT-CCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHHH
T ss_pred ccccccccc----Cccchhhhhc-cCCCCCEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHHH
Confidence 998765432 3335555443 36789999999876543 58999999999999999999999997 89997665543
Q ss_pred hhhcccchhccHHHHHHHHHHHHhhcC---CCCCCCHHHHHH
Q 041105 357 SIANGETLAILAAEFKQALNAYLQELV---TSPVRSLADVIA 395 (403)
Q Consensus 357 ~~~~~~~~~~~~~e~~~~l~~yl~~~~---~~~~~sl~~~i~ 395 (403)
. ++.++ .+|+..++.+|..... .....++.+++.
T Consensus 301 ~----~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (478)
T 3h0l_A 301 T----YYIIA-PSEASSNLARYDGVRYGYRAKEYKDIFEMYA 337 (478)
T ss_dssp H----HHHHH-HHHHHHHTTTCSSSSSSCCCSCCSSHHHHHH
T ss_pred H----HHHHH-HHHHHHHHHHhhhhhhcccccccccHHHHHH
Confidence 2 34555 7888887776643211 112355666554
No 4
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-80 Score=637.94 Aligned_cols=302 Identities=28% Similarity=0.379 Sum_probs=275.5
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeeccccc
Q 041105 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVKDNIA 119 (403)
Q Consensus 41 ~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vKD~i~ 119 (403)
+|+.+|+++|++|++|++|++++||+||+++|+ +|||+++++| |+++|+++|+++ ++|+.+||||||||+|||||+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEEL--RRGQVRGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHH--hcCCCCCCcCCeeEEEEeccc
Confidence 478999999999999999999999999999999 9999999998 999999999988 778889999999999999999
Q ss_pred ccCCCcCCcCchhhcCCCC-CCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 041105 120 TKDKMNTTAGSFALLGSVV-PRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSS 198 (403)
Q Consensus 120 ~~gg~~Tt~Gs~~l~~~~~-~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSSg 198 (403)
++| ++||+||..+ ++| .+||++|+|||++|||++||||||||++ +..++|++||+|+||||+.|+||||||
T Consensus 78 v~G-~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pGGSSg 149 (434)
T 2dc0_A 78 VKG-MPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIAL-----GITGENPWTGPVRNAVDPSRQAGGSSG 149 (434)
T ss_dssp BTT-BCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGC-----CSSCCCTTTCCCBCSSCTTBBCCSSSH
T ss_pred cCC-cccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhc-----CCCCCCCCCCCCCCCCCCCCCCcccHH
Confidence 996 9999999999 677 8999999999999999999999999998 678899999999999999999999999
Q ss_pred hhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCCCCC
Q 041105 199 GSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAK 278 (403)
Q Consensus 199 GsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~d~~ 278 (403)
|||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+ +.
T Consensus 150 GsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~ 228 (434)
T 2dc0_A 150 GSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SI 228 (434)
T ss_dssp HHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CC
T ss_pred HHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997 55
Q ss_pred ChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHHHhh
Q 041105 279 DEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSI 358 (403)
Q Consensus 279 d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~~~~ 358 (403)
|+ ..++++||||+.++++. .++|+++++++++++.|+++||+|++ +++| +++....
T Consensus 229 d~--------------------~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-~~~~~~~- 284 (434)
T 2dc0_A 229 PL--------------------EGVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRAEVRE-VSLP-LEGVYEV- 284 (434)
T ss_dssp CC--------------------CCCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTCEEEE-CCCC-CTTHHHH-
T ss_pred Cc--------------------ccccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC-cHHHHHH-
Confidence 52 12477999999876554 58999999999999999999999997 7888 5544332
Q ss_pred hcccchhccHHHHHHHHHHHHhhc
Q 041105 359 ANGETLAILAAEFKQALNAYLQEL 382 (403)
Q Consensus 359 ~~~~~~~~~~~e~~~~l~~yl~~~ 382 (403)
++.++ .+|+...+..++...
T Consensus 285 ---~~~~~-~~e~~~~~~~~~~~~ 304 (434)
T 2dc0_A 285 ---YTRLV-RYEAARIHEKALKEH 304 (434)
T ss_dssp ---HHHHH-HHHHHHHSHHHHHHC
T ss_pred ---HHHHH-HHHHHHHHHHHHHhc
Confidence 34455 778877777776543
No 5
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-80 Score=643.55 Aligned_cols=310 Identities=30% Similarity=0.460 Sum_probs=279.7
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeeccccc
Q 041105 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVKDNIA 119 (403)
Q Consensus 41 ~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vKD~i~ 119 (403)
|++.+|+++|++|++|++||+++||+||+++|+.+|||++++ + ++++|+++|++ .|||||||+|||||+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 578999999999999999999999999999999999999999 7 99999987752 199999999999999
Q ss_pred ccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 041105 120 TKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSG 199 (403)
Q Consensus 120 ~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSSgG 199 (403)
++| ++||+||..+.++++.+|+++|+|||++|||++||||||||++ +..+.|++||+|+||||+.++|||||||
T Consensus 71 ~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgG 144 (471)
T 3kfu_E 71 TRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGM-----GSSTEHSAFFPTKNPFDPDRVPGGSSGG 144 (471)
T ss_dssp CTT-SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred cCC-ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhc-----CCCCCCCCCCCcCCCCccCcCCCCCcHH
Confidence 996 9999999999999999999999999999999999999999998 6678999999999999999999999999
Q ss_pred hHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCCCCCC
Q 041105 200 SAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKD 279 (403)
Q Consensus 200 saaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~d~~d 279 (403)
||++||+|++++|+|||||||||+||+||||||||||+||+|+.|++|+++++|++|||||||+|+++++++|.|+|+.|
T Consensus 145 saaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d 224 (471)
T 3kfu_E 145 SAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLD 224 (471)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTC
T ss_pred HHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHHHhhh
Q 041105 280 EATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIA 359 (403)
Q Consensus 280 ~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~~~~~ 359 (403)
+.+... | .+|...+. ..++++||||+.+++ ..++|+++++++++++.|+++||+|++ +++|.+++....
T Consensus 225 ~~~~~~----~-~~~~~~~~-~~~~~lrIgv~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~~~-- 293 (471)
T 3kfu_E 225 ATSLDL----P-PRFQEALE-GPLPPLRLGVVREAL--AGNSPGVERALEEALKVFRELGLSVRE-VSWPSLPQALAA-- 293 (471)
T ss_dssp TTCCCC----C-CCTTCCSC-CCCSSCEEEEEGGGT--TTCCHHHHHHHHHHHHHHHTTTCEEEE-ECCTTGGGHHHH--
T ss_pred ccccCC----C-cchhhhhc-cCCCCCEEEEECCcc--CCCCHHHHHHHHHHHHHHHHcCCeeee-ecCccHHHHHHH--
Confidence 765432 2 24544443 357899999998865 368999999999999999999999998 899977665433
Q ss_pred cccchhccHHHHHHHHHHHHh
Q 041105 360 NGETLAILAAEFKQALNAYLQ 380 (403)
Q Consensus 360 ~~~~~~~~~~e~~~~l~~yl~ 380 (403)
++.++ .+|+..++.+|..
T Consensus 294 --~~~~~-~~e~~~~~~~~~~ 311 (471)
T 3kfu_E 294 --YYILA-PAEASSNLARYDG 311 (471)
T ss_dssp --HHHHH-HHHHHHHGGGCST
T ss_pred --HHHHH-HHHHHHHHHHhhh
Confidence 34555 7888888777643
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=3.5e-79 Score=636.69 Aligned_cols=319 Identities=21% Similarity=0.282 Sum_probs=277.9
Q ss_pred ccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCcee
Q 041105 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPIL 113 (403)
Q Consensus 35 ~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~ 113 (403)
..++.. ++.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|++ | .||||||||+
T Consensus 3 ~~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d----------~gpL~GvPi~ 70 (493)
T 3a2q_A 3 KVDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A----------SGPFAGVPYL 70 (493)
T ss_dssp -CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C----------CSTTTTCEEE
T ss_pred hhhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c----------CCCcCCcEEE
Confidence 345667 9999999999999999999999999999999999999999998 9999986 5 3899999999
Q ss_pred ecccc-cccCCCcCCcCchhhc--CCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCC
Q 041105 114 VKDNI-ATKDKMNTTAGSFALL--GSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLS 190 (403)
Q Consensus 114 vKD~i-~~~gg~~Tt~Gs~~l~--~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~ 190 (403)
||||| +++| ++||+||..+. ++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||+.
T Consensus 71 vKD~~~~v~G-~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~ 144 (493)
T 3a2q_A 71 LKDLTVVSQG-DINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-----QVTTEPEAWGATRNPWNLG 144 (493)
T ss_dssp EESSSSCCTT-SBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGC-----SSSCCCTTTCCCCBTTBTT
T ss_pred EecCCcCcCC-CcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhc-----CCCCCCCCCCCCCCCCCCC
Confidence 99999 9996 99999999999 99999999999999999999999999999998 6788999999999999999
Q ss_pred CCCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCC--C-CCCCCCcccCCCcCCHHHHHH
Q 041105 191 ADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGV--I-PVSPRLDTVGPISKTVADTVY 267 (403)
Q Consensus 191 ~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~--~-~~s~~~d~~Gpmarsv~D~a~ 267 (403)
|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|+ + +.++++|++|||||||+|+++
T Consensus 145 ~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~ 224 (493)
T 3a2q_A 145 RSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAA 224 (493)
T ss_dssp BCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 5 777889999999999999999
Q ss_pred HHHHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEcc
Q 041105 268 VLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGS-NFTISSEVTEAFEHHVRTLRQQGAILLDNF 346 (403)
Q Consensus 268 ~~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~-~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~ 346 (403)
++++|.|+|++|+.+... |..+|.+.+. ..++++||||+.++++ ...++|+++++++++++.|+++||+|++ +
T Consensus 225 ~l~~l~g~d~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~ 298 (493)
T 3a2q_A 225 LLDVVSGHRPGDTFCAPT----ASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-A 298 (493)
T ss_dssp HHHHHBSCCTTCSCCCCC----CSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-C
T ss_pred HHHHHcCCCCCCcccccC----CCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-e
Confidence 999999999988654321 2224554433 2468899999988753 2358999999999999999999999998 7
Q ss_pred CCCCHH--HHHHhhhcccchhccHHHHHHHHHHHHhhc
Q 041105 347 EINNLE--AILNSIANGETLAILAAEFKQALNAYLQEL 382 (403)
Q Consensus 347 ~~p~~~--~~~~~~~~~~~~~~~~~e~~~~l~~yl~~~ 382 (403)
++|.++ .+... +..++ .+|+...+..+...+
T Consensus 299 ~~~~~~~~~~~~~----~~~~~-~~e~~~~~~~~~~~~ 331 (493)
T 3a2q_A 299 YPEALGDRSFLKD----YSTIC-DVAIAREIERNGELI 331 (493)
T ss_dssp CCGGGGCCTHHHH----HHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHH----HHHHH-HHHHHHHHHHHHHHh
Confidence 877433 22221 33444 778877555554433
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=5.9e-79 Score=632.48 Aligned_cols=310 Identities=31% Similarity=0.468 Sum_probs=270.9
Q ss_pred cccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCce
Q 041105 34 REFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPI 112 (403)
Q Consensus 34 ~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi 112 (403)
..+++.++++.+| |++|++|++||+++||+||+++|+.+|||++++++ ++ | + . ||||||||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d-----~---~-gpL~GvPi 64 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------E-----K---K-GKFWGIPV 64 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------C-----C---C-STTTTCEE
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------h-----c---c-CCcCCceE
Confidence 4567888899999 99999999999999999999999999999999987 65 2 2 2 89999999
Q ss_pred eecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 113 LVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSAD 192 (403)
Q Consensus 113 ~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~ 192 (403)
+|||||+++| ++||+||..+.++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||+.|+
T Consensus 65 ~vKD~~~v~G-~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~ 138 (476)
T 2gi3_A 65 AIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM-----GSSTERSAFFPTRNPWDLERV 138 (476)
T ss_dssp EEETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBC
T ss_pred EEEcCccCCC-CccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhc-----CCCCCCCCCCCCCCCCCCCCC
Confidence 9999999996 9999999999999999999999999999999999999999998 678899999999999999999
Q ss_pred CCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHH
Q 041105 193 PCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272 (403)
Q Consensus 193 ~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l 272 (403)
|||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus 139 pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l 218 (476)
T 2gi3_A 139 PGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEII 218 (476)
T ss_dssp CCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHH
Q 041105 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLE 352 (403)
Q Consensus 273 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~ 352 (403)
.|+|+.|+.+... |. +|.+.+. ..++++||||+.+.+.. .++|+++++++++++.|+++||+|++ +++|.++
T Consensus 219 ~g~d~~d~~~~~~----p~-~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~ 290 (476)
T 2gi3_A 219 SGRDENDATTVNR----KV-DFLSEIE-EGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIPHIK 290 (476)
T ss_dssp BSCBTTBTTCCSC----CC-CSSTTTT-SCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGG
T ss_pred hCCCCCCccccCC----Cc-chhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchH
Confidence 9999988654322 22 3444433 35788999999876533 58999999999999999999999998 7888765
Q ss_pred HHHHhhhcccchhccHHHHHHHHHHHHh
Q 041105 353 AILNSIANGETLAILAAEFKQALNAYLQ 380 (403)
Q Consensus 353 ~~~~~~~~~~~~~~~~~e~~~~l~~yl~ 380 (403)
..... +..++ .+|+..++..|..
T Consensus 291 ~~~~~----~~~~~-~~e~~~~~~~~~~ 313 (476)
T 2gi3_A 291 YSVAT----YYVIA-PAEASSNLARFDG 313 (476)
T ss_dssp GHHHH----HHHHH-HHHHHTC------
T ss_pred HHHHH----HHHHH-HHHHHHHHHHhhc
Confidence 44322 33444 6787777766543
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=5e-76 Score=620.32 Aligned_cols=296 Identities=23% Similarity=0.258 Sum_probs=264.6
Q ss_pred cccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCCCCceeec
Q 041105 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVK 115 (403)
Q Consensus 36 ~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~GvPi~vK 115 (403)
.++.++++.+|+++|++|++|++||+++|++||++.|+.+||++++.++++++|++++ ..||||||||+||
T Consensus 66 ~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~---------~~gpL~GvPi~vK 136 (573)
T 3ppm_A 66 EALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAP---------RQGLLYGVPVSLK 136 (573)
T ss_dssp HHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCC---------TTCTTTTCEEEEE
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhh---------hcCCcCCCeEEEE
Confidence 3578899999999999999999999999999999999999999999988766555432 1389999999999
Q ss_pred ccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 116 DNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCG 195 (403)
Q Consensus 116 D~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GG 195 (403)
|||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++ +..+.|++||+|+||||+.++|||
T Consensus 137 D~~~~~G-~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~-----~~~~~n~~~G~t~NP~~~~~~~GG 210 (573)
T 3ppm_A 137 ECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF-----SYDCSNPLFGQTMNPWKSSKSPGG 210 (573)
T ss_dssp TTBCCBT-CCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC-----SSSCEETTTEECCCTTCTTBCCCS
T ss_pred cccCCCC-CCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc-----cCCCCCCCCCCcCCCCCCCCCCCC
Confidence 9999996 9999999999999999999999999999999999999999998 667889999999999999999999
Q ss_pred CChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCC----CcccCCCcCCHHHHHHHHHH
Q 041105 196 SSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPR----LDTVGPISKTVADTVYVLDA 271 (403)
Q Consensus 196 SSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~----~d~~Gpmarsv~D~a~~~~~ 271 (403)
||||||++||+|++++|+|||||||||+||+||||||||||+||+|+.|++|.+.+ +|++|||||||+|+++++++
T Consensus 211 SSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~ 290 (573)
T 3ppm_A 211 SSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKA 290 (573)
T ss_dssp SSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred CCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875 78999999999999999999
Q ss_pred HhCCCCC--ChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCC
Q 041105 272 IVGFDAK--DEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEIN 349 (403)
Q Consensus 272 l~g~d~~--d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p 349 (403)
|.+.|++ |+.. +..+|.+... ...+++||||+.++++. ..+|+++++++++++.|+++||+|++ +++|
T Consensus 291 l~~~d~~~~d~~~-------~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~p 360 (573)
T 3ppm_A 291 LLCEHLFTLDPTV-------PPLPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGHTLIP-FLPN 360 (573)
T ss_dssp HSSHHHHHHCTTS-------CCCCCCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCT
T ss_pred HhcccccccCCCC-------Cccccchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCc
Confidence 9997743 3221 1113544332 34688999999887665 57999999999999999999999998 8999
Q ss_pred CHHHHHH
Q 041105 350 NLEAILN 356 (403)
Q Consensus 350 ~~~~~~~ 356 (403)
.+.++..
T Consensus 361 ~~~~~~~ 367 (573)
T 3ppm_A 361 NIPYALE 367 (573)
T ss_dssp THHHHHH
T ss_pred cHHHHHH
Confidence 8877654
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=8.8e-75 Score=591.37 Aligned_cols=289 Identities=25% Similarity=0.300 Sum_probs=257.4
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeeccccc
Q 041105 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVKDNIA 119 (403)
Q Consensus 41 ~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vKD~i~ 119 (403)
+++.+|+++|++|++|++||+++||+||+++|+.+|||++++++ + + +.++|||||||+|||||+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~--------------~~~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A--------------QASGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C--------------CSSSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c--------------ccCCCcCCCEEEEEcccc
Confidence 58999999999999999999999999999999999999999987 5 1 235899999999999999
Q ss_pred ccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCChh
Q 041105 120 TKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSG 199 (403)
Q Consensus 120 ~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSSgG 199 (403)
++| ++||+||..+.++++.+||++|+|||++|||++||||||||++ .|+ |+|+||||+.|+|||||||
T Consensus 67 v~G-~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---------~n~--G~t~NP~~~~~~pGGSSgG 134 (414)
T 1o9p_A 67 TAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---------RDP--TATLNPHNTGHSPGGASSG 134 (414)
T ss_dssp CSS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---------SCC--CSCCBTTBTTBCCCSSSHH
T ss_pred cCC-cccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---------CCC--CCCCCCCCCCCCCCcchHH
Confidence 996 9999999999999999999999999999999999999999986 234 9999999999999999999
Q ss_pred hHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCCCCCC
Q 041105 200 SAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKD 279 (403)
Q Consensus 200 saaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~d~~d 279 (403)
||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|++ +
T Consensus 135 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~ 212 (414)
T 1o9p_A 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--E 212 (414)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--G
T ss_pred HHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 1
Q ss_pred hhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCH-HHHHHhh
Q 041105 280 EATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNL-EAILNSI 358 (403)
Q Consensus 280 ~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~-~~~~~~~ 358 (403)
+ . + ...++++||||+.++++. ..+|+++++++++++.|+++||+|++ +++|.. +.+..
T Consensus 213 ~---~-----~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~~-- 271 (414)
T 1o9p_A 213 F---S-----G---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEAWR-- 271 (414)
T ss_dssp G---S-----S---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHHHH--
T ss_pred c---c-----c---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcchHHHHHH--
Confidence 1 0 1 023578999999887654 58999999999999999999999997 788743 33322
Q ss_pred hcccchhccHHHHHHHHHHHHhhc
Q 041105 359 ANGETLAILAAEFKQALNAYLQEL 382 (403)
Q Consensus 359 ~~~~~~~~~~~e~~~~l~~yl~~~ 382 (403)
.+..++ .+|+..++..++...
T Consensus 272 --~~~~~~-~~e~~~~~~~~~~~~ 292 (414)
T 1o9p_A 272 --IHPIIQ-DFEAHRALAWEFSEH 292 (414)
T ss_dssp --HHHHHH-HHHHHHHTHHHHHHS
T ss_pred --HHHHHH-HHHHHHHHHHHHHhC
Confidence 133455 788888888777654
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=2.4e-75 Score=610.86 Aligned_cols=302 Identities=27% Similarity=0.401 Sum_probs=263.0
Q ss_pred ccccHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHCCCccEEE-EeCHH-HHHHHHHHhHH---------HHHcCCCCCCC
Q 041105 39 KEATIEDLQLAFKQNQLTS-RQLVEMYIREIGRLNPLLRGVI-EVNPD-AINQADKADQE---------RKAKAPRSQLG 106 (403)
Q Consensus 39 ~~~si~~l~~~l~~g~~t~-~evv~~~l~ri~~~~~~lna~~-~~~~~-al~~A~~~D~~---------~~~~~g~~~gp 106 (403)
...++.++...|.+++++. +++++.+++++++.++.+|+++ .+..+ + .++.+.|+. + .+|+.+||
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~--~~g~~~gp 87 (521)
T 3a1k_A 11 IDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTS--IPPTSDGV 87 (521)
T ss_dssp HHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEE--ECCSSCCT
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHh--hcCCCCCC
Confidence 4457788888889999999 9999999999998886665555 55444 5 455555441 1 34777899
Q ss_pred CCCCceeecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCC
Q 041105 107 LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNP 186 (403)
Q Consensus 107 L~GvPi~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP 186 (403)
||||||+|||||+++| ++||+||..+.++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||
T Consensus 88 L~GvPi~vKD~i~v~G-~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~-----~~~~~n~~~G~t~NP 161 (521)
T 3a1k_A 88 LTGRRVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF-----SGSSFTPASGPVRNP 161 (521)
T ss_dssp TTTCEEEEETTBCCTT-SCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGC-----CSSSSCCTTCCCEET
T ss_pred CCCCEEEEEcCcccCC-cccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhh-----CCCCCCCCCCCcCCC
Confidence 9999999999999996 9999999999999999999999999999999999999999998 678899999999999
Q ss_pred CCCCCCCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHH
Q 041105 187 YVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTV 266 (403)
Q Consensus 187 ~~~~~~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a 266 (403)
||+.|+|||||||||++||+|++++|+|||||||||+||+||||||||||+||||++|++|+++++|++|||||||+|++
T Consensus 162 ~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a 241 (521)
T 3a1k_A 162 WDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAA 241 (521)
T ss_dssp TEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHH
T ss_pred CCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEcc
Q 041105 267 YVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNF 346 (403)
Q Consensus 267 ~~~~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~ 346 (403)
+++++|+|+|+.|+.+... .|..+|.+.+. ..++++||||+++.+.....+|+++++++++++.|+++||+|++ +
T Consensus 242 ~~l~vlag~d~~D~~~~~~---~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v 316 (521)
T 3a1k_A 242 LMLSVIAGRDGNDPRQADS---VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEE-V 316 (521)
T ss_dssp HHHHHHCSCCSSCTTSCTT---CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEE-E
T ss_pred HHHHHHhCCCCCCcccccc---CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-e
Confidence 9999999999988655221 12235666554 35789999999875433347999999999999999999999998 8
Q ss_pred CCCCHHHH
Q 041105 347 EINNLEAI 354 (403)
Q Consensus 347 ~~p~~~~~ 354 (403)
++|.+...
T Consensus 317 ~~p~~~~~ 324 (521)
T 3a1k_A 317 NIPWHLHA 324 (521)
T ss_dssp CCTHHHHH
T ss_pred CCCchHhH
Confidence 99866543
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=48.84 E-value=22 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041105 44 EDLQLAFKQNQLTSRQLVEMYIREIGR 70 (403)
Q Consensus 44 ~~l~~~l~~g~~t~~evv~~~l~ri~~ 70 (403)
.++.+....|++|..++++.|.+||.+
T Consensus 33 l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 33 VAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 456778889999999999999999975
No 12
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.15 E-value=33 Score=23.73 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCcccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 041105 32 ESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRL 71 (403)
Q Consensus 32 ~~~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~ 71 (403)
..+..++..+++.+|.+.++..-+...-.-...++|+.++
T Consensus 4 ~~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 4 GSSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp SSCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred ccCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 3456789999999999999998888754445556666554
No 13
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.66 E-value=26 Score=24.77 Aligned_cols=39 Identities=10% Similarity=0.189 Sum_probs=27.4
Q ss_pred CCcccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 041105 32 ESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGR 70 (403)
Q Consensus 32 ~~~~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~ 70 (403)
.+...++..+++.+|.+.++...+.+.-.=..+++||..
T Consensus 4 ~~~~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~ 42 (55)
T 2do1_A 4 GSSGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQA 42 (55)
T ss_dssp CCCCCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred cccccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 345678899999999999998777764333444555544
Done!