Query 041105
Match_columns 403
No_of_seqs 249 out of 1791
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 05:57:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041105.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041105hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f2aa1 c.117.1.1 (A:1-485) Gl 100.0 9E-82 6.5E-86 649.1 30.5 342 37-398 2-347 (485)
2 d1m22a_ c.117.1.1 (A:) Peptide 100.0 1.8E-80 1.3E-84 636.8 33.2 351 35-400 1-354 (490)
3 d1mt5a_ c.117.1.1 (A:) Fatty a 100.0 6.7E-79 4.8E-83 635.5 24.2 298 35-356 35-337 (537)
4 d2gi3a1 c.117.1.1 (A:1-475) Gl 100.0 1.4E-77 1.1E-81 615.7 21.4 308 35-379 3-311 (475)
5 d1ocka_ c.117.1.1 (A:) Malonam 100.0 2.1E-71 1.5E-75 560.0 26.7 291 41-383 2-293 (412)
6 d1zhva2 d.58.18.8 (A:62-127) H 35.9 12 0.00084 25.9 2.8 18 326-343 49-66 (66)
7 d2dloa2 g.39.1.3 (A:43-75) Thy 35.4 6.5 0.00047 23.4 1.1 13 105-117 7-19 (33)
8 d1h1js_ a.140.2.1 (S:) S/mar D 32.7 8.7 0.00064 24.4 1.5 37 36-72 3-39 (44)
9 d1zl0a2 c.23.16.7 (A:3-169) LD 27.9 47 0.0034 26.7 5.9 34 305-344 13-46 (167)
10 d1v58a2 d.17.3.1 (A:2-61) Thio 25.4 17 0.0012 24.6 2.0 21 330-350 4-24 (60)
No 1
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=9e-82 Score=649.09 Aligned_cols=342 Identities=28% Similarity=0.427 Sum_probs=304.4
Q ss_pred ccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCceeec
Q 041105 37 SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPILVK 115 (403)
Q Consensus 37 ~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~vK 115 (403)
.+...|+.||+++|++|++|++||+++||+||+++|+.+|||++++++ |+++|+++|+++ ++|+.+||||||||+||
T Consensus 2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~~~~~gpL~GiPi~vK 79 (485)
T d2f2aa1 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ--AKDQMDGKLFGIPMGIK 79 (485)
T ss_dssp CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEE
T ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCcCeEEEE
Confidence 577889999999999999999999999999999999999999999998 999999999998 78999999999999999
Q ss_pred ccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 116 DNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCG 195 (403)
Q Consensus 116 D~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GG 195 (403)
|+|+++| ++||+||.++.++++.+|+++|++|+++|||++|||||+||++ +..+.|.+||+|+||||+.++|||
T Consensus 80 D~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~-----~~~~~n~~~g~~~NP~~~~~~~GG 153 (485)
T d2f2aa1 80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG 153 (485)
T ss_dssp TTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred cccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc-----cccccCccccCcCCCCCcccccCC
Confidence 9999996 9999999999999999999999999999999999999999998 677899999999999999999999
Q ss_pred CChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCC
Q 041105 196 SSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGF 275 (403)
Q Consensus 196 SSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~ 275 (403)
||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|+|+++++++|.|+
T Consensus 154 SSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~ 233 (485)
T d2f2aa1 154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233 (485)
T ss_dssp SSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred ccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHHHH
Q 041105 276 DAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAIL 355 (403)
Q Consensus 276 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~~~ 355 (403)
+++|+.+... +..+|...+. ..++++|||++.+++.. ..+++++++++++++.|+++|++|++ +++|.++...
T Consensus 234 ~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~~~~~~ 306 (485)
T d2f2aa1 234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI 306 (485)
T ss_dssp BTTBTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred cccccccCCC----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchhhhH
Confidence 9999765433 3335665555 45899999999887665 58999999999999999999999997 8999765443
Q ss_pred HhhhcccchhccHHHHHHHHHHHHhhc---CCCCCCCHHHHHHhhh
Q 041105 356 NSIANGETLAILAAEFKQALNAYLQEL---VTSPVRSLADVIAFNK 398 (403)
Q Consensus 356 ~~~~~~~~~~~~~~e~~~~l~~yl~~~---~~~~~~sl~~~i~~~~ 398 (403)
.. +..+. ..|+..++..|.... .....+++.++.+.++
T Consensus 307 ~~----~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 347 (485)
T d2f2aa1 307 PS----YYVIA-SSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSR 347 (485)
T ss_dssp HH----HHHHH-HHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHH
T ss_pred HH----HHHHH-HHHHHHHHHHhhhhhhccccccccCHHHHHHHhh
Confidence 22 33344 677777776664322 2233677777766543
No 2
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}
Probab=100.00 E-value=1.8e-80 Score=636.78 Aligned_cols=351 Identities=45% Similarity=0.736 Sum_probs=309.6
Q ss_pred ccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---CCCccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCCCCc
Q 041105 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRL---NPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIP 111 (403)
Q Consensus 35 ~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~---~~~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~GvP 111 (403)
++++.++|+.||+++|++|++|++||+++|++||+++ |+.+|||+++++|++++|+++|+++ ++|+.+|||||||
T Consensus 1 p~~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~a~~~A~~~d~~~--~~g~~~gpL~GvP 78 (490)
T d1m22a_ 1 PFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGIP 78 (490)
T ss_dssp CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTCE
T ss_pred CCCcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHHHHHHHHHHHHHH--HCCCCCCCcCCCE
Confidence 4688999999999999999999999999999999876 4789999999989999999999998 7899999999999
Q ss_pred eeecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 041105 112 ILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSA 191 (403)
Q Consensus 112 i~vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~ 191 (403)
|+|||||+++| ++||+||..+.+..+ +||++|++||++|||++||||||||+++..++...++|++||+|+||||+.+
T Consensus 79 ~~vKD~~~v~g-~~tt~Gs~~~~~~~~-~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~ 156 (490)
T d1m22a_ 79 LLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISH 156 (490)
T ss_dssp EEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTB
T ss_pred EEEEcccccCC-CccCCcchhhcccCC-ccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCcccccc
Confidence 99999999996 999999999998765 6999999999999999999999999986554445678999999999999999
Q ss_pred CCCCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHH
Q 041105 192 DPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDA 271 (403)
Q Consensus 192 ~~GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~ 271 (403)
+||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.++++|++|||+|+++|+++++++
T Consensus 157 ~~GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~v 236 (490)
T d1m22a_ 157 SPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 236 (490)
T ss_dssp CCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCH
Q 041105 272 IVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNL 351 (403)
Q Consensus 272 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~ 351 (403)
|.+.|+.|+........ +..++.........++++++++...+. .++.+.++++++++.|+++|++|++ +++|++
T Consensus 237 l~~~d~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~a~~~l~~~g~~v~e-v~~p~~ 311 (490)
T d1m22a_ 237 IAGRDDADPATATMPGR-AVYDYTARLDPQGLRGKRIGLLQTPLL---KYRGMPPLIEQAATELRRAGAVVVP-VELPNQ 311 (490)
T ss_dssp HCCCCTTCGGGGGCTTC-CCCCGGGGCCTTTTTTCEEEEECSGGG---GSTTHHHHHHHHHHHHHHTTCEEEE-ECCTTT
T ss_pred hhcccccCcccchhccc-cccchhhhccccccccccccccccccc---cccchhhhhhhhHHHHhhcccceee-ccCCch
Confidence 99999998665443221 112444444455678899999987543 4678899999999999999999998 899876
Q ss_pred HHHHHhhhcccchhccHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhhhC
Q 041105 352 EAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLADVIAFNKMF 400 (403)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~e~~~~l~~yl~~~~~~~~~sl~~~i~~~~~~ 400 (403)
...... ++.++ .+|+..++..|+..+. .+.+++.|++.+++.+
T Consensus 312 ~~~~~~----~~~~~-~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 354 (490)
T d1m22a_ 312 GAWAEA----ERTLL-LYEFKAGLERYFNTHR-APLRSLADLIAFNQAH 354 (490)
T ss_dssp TTTHHH----HHHHH-HHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHT
T ss_pred HHHHHH----HHHHH-HHHHHhhhhhHhhhcc-cccchHHHHHHHHHhh
Confidence 654432 34555 8999999999998765 4578999999887653
No 3
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00 E-value=6.7e-79 Score=635.51 Aligned_cols=298 Identities=21% Similarity=0.227 Sum_probs=269.1
Q ss_pred ccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCcee
Q 041105 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPIL 113 (403)
Q Consensus 35 ~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~ 113 (403)
..+|.++|+.||+++|++|++|++||+++||+||+++|+.+|||+++++| +++. +++..+||||||||+
T Consensus 35 ~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~----------a~~~~~gpL~GvPi~ 104 (537)
T d1mt5a_ 35 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQL----------SQAPRQGLLYGVPVS 104 (537)
T ss_dssp SHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHH----------HTCCTTSTTTTCEEE
T ss_pred hHHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHH----------HcCCCCCCcCCCeEE
Confidence 34689999999999999999999999999999999999999999999987 4332 446778999999999
Q ss_pred ecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 114 VKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADP 193 (403)
Q Consensus 114 vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 193 (403)
|||||+++| ++||+||..+.++++.+|+++|++||++||||+||||||||++ +..++|++||+|+||||+.++|
T Consensus 105 vKD~~~~~g-~~tt~Gs~~~~~~~~~~da~~V~~L~~aGaii~gkTn~~e~~~-----~~~~~n~~~G~t~NP~~~~~~~ 178 (537)
T d1mt5a_ 105 LKECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSML-----SFDCSNPLFGQTMNPWKSSKSP 178 (537)
T ss_dssp EETTSCCBT-SBCCSSCGGGSSCBBSSCCHHHHHHHHTTCEEEEEECCCTTSC-----CSSCCCTTTCCCCCSSCTTSCC
T ss_pred eEcccCcCC-CccCccChhhcCCCCCccHHHHHHHHhCCCEEeeccccccccc-----ccchhhhhhccccccccccccc
Confidence 999999996 9999999999999999999999999999999999999999998 7789999999999999999999
Q ss_pred CCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCC----CCcccCCCcCCHHHHHHHH
Q 041105 194 CGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSP----RLDTVGPISKTVADTVYVL 269 (403)
Q Consensus 194 GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~----~~d~~Gpmarsv~D~a~~~ 269 (403)
||||||||++||+|++++|+|||||||||+||+||||||||||+||||+.|++|..+ ++|++|||||||+|+++++
T Consensus 179 GGSSgGsaaavaag~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l 258 (537)
T d1mt5a_ 179 GGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCL 258 (537)
T ss_dssp CSSSHHHHHHHGGGSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHH
T ss_pred CCCcCCccccccccccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754 5699999999999999999
Q ss_pred HHHhCCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCC
Q 041105 270 DAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEIN 349 (403)
Q Consensus 270 ~~l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p 349 (403)
++|.|+|++|..+..+ ..+|.+.+. ...+++|||++.++++. .++|+++++++++++.|+++||+|+| +++|
T Consensus 259 ~~l~g~d~~d~~~~~~-----~~~~~~~~~-~~~k~lRIg~~~~~~~~-~~~p~v~~a~~~a~~~L~~~Ga~Vve-v~~~ 330 (537)
T d1mt5a_ 259 KALLCEHLFTLDPTVP-----PLPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGHTLIP-FLPN 330 (537)
T ss_dssp HHHSSHHHHHSCTTSC-----CCCCCHHHH-SCCSCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCT
T ss_pred HHhcCCCccccccccC-----cchhhhhhh-hcccccceeeecccccc-cccHHHHHHHhhhHHhhccccceEEe-cCCc
Confidence 9999988766433222 123554443 35789999999887765 58999999999999999999999998 8999
Q ss_pred CHHHHHH
Q 041105 350 NLEAILN 356 (403)
Q Consensus 350 ~~~~~~~ 356 (403)
+++...+
T Consensus 331 ~~~~~~~ 337 (537)
T d1mt5a_ 331 NIPYALE 337 (537)
T ss_dssp THHHHHH
T ss_pred chHHHHH
Confidence 8876543
No 4
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.4e-77 Score=615.65 Aligned_cols=308 Identities=31% Similarity=0.464 Sum_probs=269.0
Q ss_pred ccccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHH-HHHHHHHHhHHHHHcCCCCCCCCCCCcee
Q 041105 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPIL 113 (403)
Q Consensus 35 ~~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~D~~~~~~~g~~~gpL~GvPi~ 113 (403)
.+++..+++ +++++.|++|++||++.||+||+++|+.+|||++++++ ++ ..+||||||||+
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~---------------~~~gpL~GvPi~ 64 (475)
T d2gi3a1 3 DLDFRKLTI---EECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV---------------EKKGKFWGIPVA 64 (475)
T ss_dssp CSCGGGCCH---HHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC---------------CCCSTTTTCEEE
T ss_pred CCChHHhHH---HHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhh---------------hccCCCCCCEEE
Confidence 356667775 45789999999999999999999999999999999986 32 235899999999
Q ss_pred ecccccccCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 041105 114 VKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADP 193 (403)
Q Consensus 114 vKD~i~~~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~ 193 (403)
|||||+++| ++||+||..++++++.+||++|++||++|||++||||||||++ +..++|++||+|+||||+.++|
T Consensus 65 vKD~~~~~g-~~tt~Gs~~~~~~~~~~da~~v~~L~~aGaii~Gktn~~e~~~-----~~~~~~~~~G~t~nP~~~~~~~ 138 (475)
T d2gi3a1 65 IKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM-----GSSTERSAFFPTRNPWDLERVP 138 (475)
T ss_dssp EETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCC
T ss_pred EEcccCCCC-CccCccChhhcCCCCCCCcceeeehhhcCCccccccchhhccc-----ccccccchhccccccccccccc
Confidence 999999996 9999999999999999999999999999999999999999998 6788999999999999999999
Q ss_pred CCCChhhHHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHh
Q 041105 194 CGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIV 273 (403)
Q Consensus 194 GGSSgGsaaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~ 273 (403)
||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|.
T Consensus 139 GGSSgGsaaavAag~~~~a~GtD~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~ 218 (475)
T d2gi3a1 139 GGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIIS 218 (475)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHB
T ss_pred CcccccchhhhhhcCcceEeecCCCccchhhhHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCHHH
Q 041105 274 GFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEA 353 (403)
Q Consensus 274 g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~~~ 353 (403)
|+|+.|+.+...+. ++.... ...++++|||+..+.+.. ..+++++++++++++.|+++|++|++ +++|.+++
T Consensus 219 g~d~~d~~s~~~~~-----~~~~~~-~~~~~~~ri~~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~V~e-v~~p~~~~ 290 (475)
T d2gi3a1 219 GRDENDATTVNRKV-----DFLSEI-EEGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIPHIKY 290 (475)
T ss_dssp SCBTTBTTCCSCCC-----CSSTTT-TSCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGG
T ss_pred cccccccccccccc-----ccchhc-cccccccceeeeeccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchHH
Confidence 99999876544321 222222 246789999999886654 58999999999999999999999998 89998765
Q ss_pred HHHhhhcccchhccHHHHHHHHHHHH
Q 041105 354 ILNSIANGETLAILAAEFKQALNAYL 379 (403)
Q Consensus 354 ~~~~~~~~~~~~~~~~e~~~~l~~yl 379 (403)
.... +..+. .+|+..++..|.
T Consensus 291 ~~~~----~~~i~-~~e~~~~l~~~~ 311 (475)
T d2gi3a1 291 SVAT----YYVIA-PAEASSNLARFD 311 (475)
T ss_dssp HHHH----HHHHH-HHHHHTC-----
T ss_pred HHHH----HHHHH-HHHHHHHHHHhh
Confidence 5432 34455 778877777653
No 5
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}
Probab=100.00 E-value=2.1e-71 Score=559.97 Aligned_cols=291 Identities=25% Similarity=0.306 Sum_probs=259.5
Q ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHHcCCCCCCCCCCCceeecccccc
Q 041105 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNIAT 120 (403)
Q Consensus 41 ~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~~~lna~~~~~~~al~~A~~~D~~~~~~~g~~~gpL~GvPi~vKD~i~~ 120 (403)
+|+.||+++|++|++|++||+++|++||+++|+.+|||++.+++ .+++.+||||||||+|||+|++
T Consensus 2 ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~--------------~~~~~~gpL~GvPi~vKD~~~v 67 (412)
T d1ocka_ 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS--------------ARAQASGPLRGIAVGIKDIIDT 67 (412)
T ss_dssp CCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT--------------CCCCSSSTTTTCEEEEETTBCC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH--------------hcCccCCCcCCCEEEEEcccCC
Confidence 68999999999999999999999999999999999999997632 4567789999999999999999
Q ss_pred cCCCcCCcCchhhcCCCCCCchHHHHHHHHcCCeEEEecCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCChhh
Q 041105 121 KDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGS 200 (403)
Q Consensus 121 ~gg~~Tt~Gs~~l~~~~~~~da~vV~rL~~aGAIilGKTn~~E~a~~~~~~~~~g~n~~~G~t~NP~~~~~~~GGSSgGs 200 (403)
+| ++||+||.+|.++++.+|+++|++|+++|||++|||||+||++ ..+|.+.|||++.+++||||||+
T Consensus 68 ~G-~~tt~Gs~~~~~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~-----------~~~~~~~np~~~~~~~GgSSgG~ 135 (412)
T d1ocka_ 68 AN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS-----------RDPTATLNPHNTGHSPGGSSSGS 135 (412)
T ss_dssp SS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS-----------SCCCSCCBTTBTTBCCCSSSHHH
T ss_pred CC-CcccccChhhhCCCCcceeeEEeeecccccccchhhhhhhhhc-----------cccccccccccccccCCCcCCCc
Confidence 96 9999999999999999999999999999999999999999986 13578999999999999999999
Q ss_pred HHHHHhcCcceeecccCCCccccccccCCceeeeeCCCcccCCCCCCCCCCCcccCCCcCCHHHHHHHHHHHhCCCCCCh
Q 041105 201 AISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDE 280 (403)
Q Consensus 201 aaaVAag~~~~aiGtDtgGSiR~PAa~~Gv~GlKPT~G~vs~~G~~~~s~~~d~~Gpmarsv~D~a~~~~~l~g~d~~d~ 280 (403)
|++||+|++++|+|||||||||+||+||||||||||+||+|+.|++|+++++|++|||+|+|+|+++++++|.|+|+.+.
T Consensus 136 aaava~g~~~~a~GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~ 215 (412)
T d1ocka_ 136 AAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSG 215 (412)
T ss_dssp HHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSS
T ss_pred eeeeecccccccCccccccccccchhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876541
Q ss_pred hhhhcccCCCCCCcccccCCCCCCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEccCCCCH-HHHHHhhh
Q 041105 281 ATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNL-EAILNSIA 359 (403)
Q Consensus 281 ~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~~~~~p~~-~~~~~~~~ 359 (403)
. ...++.|+|++.++++. ..++++.++++++++.|+++|+++++ ++++.. ..++..
T Consensus 216 ~-------------------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~a~~~L~~~G~~v~e-~~~~~~~~~~~~~-- 272 (412)
T d1ocka_ 216 I-------------------VPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEAWRI-- 272 (412)
T ss_dssp C-------------------CCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHHHHH--
T ss_pred c-------------------CCccccccccccccccc-cchhHHHHHHHHHHHHHHHhhhcccc-ccccchhhhhhhh--
Confidence 1 13456899999988776 58999999999999999999999998 677653 333322
Q ss_pred cccchhccHHHHHHHHHHHHhhcC
Q 041105 360 NGETLAILAAEFKQALNAYLQELV 383 (403)
Q Consensus 360 ~~~~~~~~~~e~~~~l~~yl~~~~ 383 (403)
+..+. .+|+..++..++....
T Consensus 273 --~~~~~-~~e~~~~~~~~~~~~~ 293 (412)
T d1ocka_ 273 --HPIIQ-DFEAHRALAWEFSEHH 293 (412)
T ss_dssp --HHHHH-HHHHHHHTHHHHHHSG
T ss_pred --hhhhh-hHHHHHHHHHhhcccc
Confidence 33444 6788777777776653
No 6
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=35.93 E-value=12 Score=25.85 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHCCCEEE
Q 041105 326 EAFEHHVRTLRQQGAILL 343 (403)
Q Consensus 326 ~~~~~a~~~L~~~G~~vv 343 (403)
+..++|++.|+++||+|+
T Consensus 49 ~~~~~A~~~L~~~g~~v~ 66 (66)
T d1zhva2 49 NDLEKTADLLANAGHSLL 66 (66)
T ss_dssp GGHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHccCEeC
Confidence 357889999999999985
No 7
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.45 E-value=6.5 Score=23.45 Aligned_cols=13 Identities=46% Similarity=0.790 Sum_probs=10.7
Q ss_pred CCCCCCceeeccc
Q 041105 105 LGLHGIPILVKDN 117 (403)
Q Consensus 105 gpL~GvPi~vKD~ 117 (403)
..|+||||+|-..
T Consensus 7 ~~LDGvPFtvD~~ 19 (33)
T d2dloa2 7 RGLDGIPFTVDAT 19 (33)
T ss_dssp CBCTTSCEECCTT
T ss_pred cccCCCcEEEcCC
Confidence 4799999998754
No 8
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.69 E-value=8.7 Score=24.39 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=28.5
Q ss_pred cccccccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHC
Q 041105 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN 72 (403)
Q Consensus 36 ~~~~~~si~~l~~~l~~g~~t~~evv~~~l~ri~~~~ 72 (403)
.++..+++.+|.+.+++..+...-.=...++|+.+++
T Consensus 3 ~dy~~ltv~eLK~~lk~rgL~~sG~Ka~Li~RL~~~d 39 (44)
T d1h1js_ 3 ADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDD 39 (44)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred CcHHHCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHHh
Confidence 3678899999999999998887655555666776653
No 9
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.88 E-value=47 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q 041105 305 GKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLD 344 (403)
Q Consensus 305 ~lrIGv~~~~~~~~~~~~~v~~~~~~a~~~L~~~G~~vv~ 344 (403)
|-|||++..... +++ +.++++++.|++.|.+|+.
T Consensus 13 Gd~I~iiAPS~~---~~~---~~l~~~~~~L~~~G~~v~~ 46 (167)
T d1zl0a2 13 DGRVALIAPASA---IAT---DVLEATLRQLEVHGVDYHL 46 (167)
T ss_dssp CSEEEEECCSBC---CCH---HHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCc---CCH---HHHHHHHHHHHHCCCEEEE
Confidence 459999977643 454 4689999999999999986
No 10
>d1v58a2 d.17.3.1 (A:2-61) Thiol:disulfide interchange protein DsbG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.35 E-value=17 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.1
Q ss_pred HHHHHHHHCCCEEEEccCCCC
Q 041105 330 HHVRTLRQQGAILLDNFEINN 350 (403)
Q Consensus 330 ~a~~~L~~~G~~vv~~~~~p~ 350 (403)
++++.|+++|.+|+..++-|.
T Consensus 4 a~vk~le~qG~~ii~~F~Apg 24 (60)
T d1v58a2 4 APVKAIEKQGITIIKTFDAPG 24 (60)
T ss_dssp HHHHHHHTTTEEEEEEEECST
T ss_pred hHHHHHHhCCCEEEEEecCCC
Confidence 356889999999998777764
Done!