RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 041105
(403 letters)
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 358 bits (921), Expect = e-120
Identities = 167/371 (45%), Positives = 216/371 (58%), Gaps = 17/371 (4%)
Query: 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMY---IREIGRLNPLLRGVIEVNPDAINQADKA 92
+ E LQ A + QL Y I I R P L VIE+NPDA A
Sbjct: 1 QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60
Query: 93 DQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAG 152
D ERKA R L HGIP+L+KDNI D M TTAGS AL G+ RDAF+V +L +AG
Sbjct: 61 DAERKAGKVRGPL--HGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAG 118
Query: 153 AIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVS 212
A+ILGKA++SEWA+FR+ S +GW AR G +NPY L PCGSSSGS +VAA + AV+
Sbjct: 119 AVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVA 178
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
+GT+TD SI CP+ N +VG+KPTVGL+SRDG++P+S DT GP+++TVAD VL AI
Sbjct: 179 IGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI 238
Query: 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
G D D AT A P Y L L+G RLG+ RN EV FE +
Sbjct: 239 AGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNY---LGYHPEVDAQFERAL 293
Query: 333 RTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVT-SPVRSLA 391
L+ GA+++D ++++ + +L EFK LNAYL+ +PVR+LA
Sbjct: 294 AELKAAGAVVIDVVDLDDGD------WGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLA 347
Query: 392 DVIAFNKMFPE 402
D+IAFN+
Sbjct: 348 DLIAFNRAQHA 358
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 353 bits (908), Expect = e-118
Identities = 161/372 (43%), Positives = 227/372 (61%), Gaps = 18/372 (4%)
Query: 39 KEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN---PLLRGVIEVNPDAINQADKADQE 95
KE TI D+Q A + +LTS++LV Y+ I + + P + ++E+NPDAI A+ D E
Sbjct: 11 KELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHE 70
Query: 96 RKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAII 155
RK K R L HGIP+L+KDNI T D M+T+AG+ AL + DAF+VTKL EAGA+I
Sbjct: 71 RKIKGVRGPL--HGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVI 128
Query: 156 LGKASMSEWAHFRTFESPNGWCARTGQGKNPY---VLSADPCGSSSGSAISVAANMVAVS 212
LGKA+M+E A+F +FE G+ AR GQ NPY GSS+GSAI+VAAN VS
Sbjct: 129 LGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVS 188
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
+GT+TD SIL P+ NSVVGIKPTVGLISR G+IP + DT GP ++TV D +L ++
Sbjct: 189 VGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSL 248
Query: 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTE-AFEHH 331
G D KD T + S+ I Y ++L +GL G ++G+ N + S E E F+
Sbjct: 249 TGVDEKDVVTHK-SEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKET 307
Query: 332 VRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQEL-VTSPVRSL 390
+ LR +GA ++++ +I S + +L E K +L+ YL +L T PV S+
Sbjct: 308 IEVLRSEGATVVEDIDI-------PSFHREWSWGVLLYELKHSLDNYLSKLPSTIPVHSI 360
Query: 391 ADVIAFNKMFPE 402
++++ FN+ E
Sbjct: 361 SELMEFNENIAE 372
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 279 bits (715), Expect = 3e-89
Identities = 139/369 (37%), Positives = 219/369 (59%), Gaps = 19/369 (5%)
Query: 34 REFSVKEATIEDLQLAFKQNQLTSRQLVEMY---IREIGRLNPLLRGVIEVNPDAINQAD 90
+E V AT+++LQ +L+ +L +Y I+E + L V E+NP+A+ +A
Sbjct: 64 KEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEAR 123
Query: 91 KADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLE 150
K DQER ++ +S L+GIP++VKDN+ T M T+AG++ L + +DA +V +L E
Sbjct: 124 KLDQER-SRNKKS--NLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIVKQLKE 180
Query: 151 AGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPY-VLSADPCGSSSGSAISVAANMV 209
GA +LGKA+MSEWA++ +F P+G+ + GQ NPY + D GSSSGSA VAA+
Sbjct: 181 EGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVVAADFA 240
Query: 210 AVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVL 269
+++GT+T SI+ P+ SVVG++P++G++SR G+IP++ LDT GP+++TV D +
Sbjct: 241 PLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLF 300
Query: 270 DAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFE 329
+A++G+D KD E K Y + L GL+GK++G++ ++ V E
Sbjct: 301 NAMIGYDEKD-VMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVDQQDENRKAVAEKIR 359
Query: 330 HHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRS 389
+ L+ GAIL D ++NN + N +T L EFK +N Y + PV+S
Sbjct: 360 ---KDLQDAGAILTDYIQLNN-----GGVDNLQT---LEYEFKHNVNDYFSQQKNVPVKS 408
Query: 390 LADVIAFNK 398
L ++IAFNK
Sbjct: 409 LEEIIAFNK 417
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 276 bits (708), Expect = 8e-89
Identities = 118/311 (37%), Positives = 169/311 (54%), Gaps = 17/311 (5%)
Query: 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDA---INQADK 91
++ E T +L + +L++ +LVE Y+ I LNP L + V+P+A + +A
Sbjct: 1 MMALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAA 60
Query: 92 ADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEA 151
AD A P L G+PI VKDNI T + TTAGS AL V P DA VV +L A
Sbjct: 61 ADARLAAGEPLG--PLAGVPIAVKDNIDTAG-LPTTAGSKALEDYVPPYDATVVERLRAA 117
Query: 152 GAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAV 211
GA+ILGK +M E+A + E+ G +NP+ L P GSS GSA +VAA +V +
Sbjct: 118 GAVILGKTNMDEFAMGSSTENS-----AFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPL 172
Query: 212 SLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDA 271
+LG+DT SI P+ +VG+KPT G +SR GV+P++ LD +GP+++TV D +LD
Sbjct: 173 ALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDV 232
Query: 272 IVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHH 331
I G D +D + PP L+G R+G+ + LG + +V AFE
Sbjct: 233 IAGPDPRD-----SPLPPPPPVPPALAGK-DLKGLRIGVPKELGGGGPLDPDVRAAFEAA 286
Query: 332 VRTLRQQGAIL 342
V+ L GA +
Sbjct: 287 VKALEAAGAEV 297
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 248 bits (636), Expect = 1e-78
Identities = 125/328 (38%), Positives = 168/328 (51%), Gaps = 23/328 (7%)
Query: 60 LVEMYIREIGRLNPLLRGVIEV-NPDAINQADKADQERKAKAPRSQLGLHGIPILVKDNI 118
LVE Y+ NP L + V +A+ QA AD+ R K LHG+PI +KDNI
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEK---GPLHGVPISLKDNI 58
Query: 119 ATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCA 178
K + TTAGS AL G P DA VV +L AGA+ILGK +M E+A T E+
Sbjct: 59 DVKG-VPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENS----- 112
Query: 179 RTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVG 238
G +NP+ LS P GSS GSA +VAA +V +++GTDT SI P+ +VG+KPT G
Sbjct: 113 AFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYG 172
Query: 239 LISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFL 298
+SR GV+P S LD VGP+++TV D +LD I G+D D S P + + L
Sbjct: 173 RVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPAD----PTSAPSPVPDFAEPL 228
Query: 299 KPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSI 358
K L+G R+G+ R F++ EV A L G +++ E +L+ L
Sbjct: 229 KKS-LKGLRIGVPREDF-YFSLDPEVQRAVRKAAAALEALGHEVVE-VEPPSLKHALPLY 285
Query: 359 ANGETLAILAAEFKQALNAYLQELVTSP 386
I AE L + L EL
Sbjct: 286 -----YIIAPAEASSNL-SDLDELYPRI 307
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 221 bits (565), Expect = 1e-67
Identities = 110/301 (36%), Positives = 154/301 (51%), Gaps = 32/301 (10%)
Query: 51 KQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHG 109
K ++++ +L + Y+ I ++P L I V + A+ QA AD + A L G
Sbjct: 2 KNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEAGP---LAG 58
Query: 110 IPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWA---- 165
IPI +KDNI TK + TT S L V P DA VV KL AGA+ILGK +M E+A
Sbjct: 59 IPIAIKDNICTKG-IRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSS 117
Query: 166 ----HFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASI 221
F G KNP+ L P GSS GSA +VAA + +LG+DT SI
Sbjct: 118 TENSAF-------------GPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSI 164
Query: 222 LCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEA 281
P+ VVG+KPT G +SR G+I + LD +GP ++TV D +L+AI G D KD +
Sbjct: 165 RQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKD-S 223
Query: 282 TREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAI 341
T S +P Y L ++G ++G+ + + EV EA E ++ L GA
Sbjct: 224 T---SADVPVPDYTAALGK-DIKGLKIGVPKEYFGE-GLDPEVKEAVEAAIKKLEDLGAE 278
Query: 342 L 342
+
Sbjct: 279 I 279
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 213 bits (543), Expect = 3e-63
Identities = 127/375 (33%), Positives = 205/375 (54%), Gaps = 36/375 (9%)
Query: 30 ATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNP---LLRGVIEVNPDAI 86
E++E + A + LQ QL+ ++L +Y+ I + + L + E+NP I
Sbjct: 154 VLEAKEPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTII 213
Query: 87 NQADKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVT 146
+A++ D+E L+G+P+L+KDNI TK+ + T+AG+ AL V+ +DA +V
Sbjct: 214 AEAEQLDKENTTNKS----ALYGMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVE 268
Query: 147 KLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAA 206
L GA+ILGK +MSEWA + PNG+ + GQ KNPY + DP GSSSGSA + +
Sbjct: 269 NLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATS 328
Query: 207 NMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTV 266
+ A+++GT+T+ SI+ P+ + S VG KP+ GL++ G+IP+S R DT GP+++TV D
Sbjct: 329 DFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAY 388
Query: 267 YVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTE 326
+A+ T S PP L L+GKR+G++ + SN E T
Sbjct: 389 LTTNAL---------TNTTSN--PP------LSTDALKGKRIGLLADGESN-----EETA 426
Query: 327 AFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSP 386
+ L++ GA +++ + E + + ++L A+FK LN +LQ + SP
Sbjct: 427 VIKKIKLDLQKAGATIIEGIAVGEFEQK-----DTDYASLLNADFKHDLNQFLQ-VNHSP 480
Query: 387 VRSLADVIAFNKMFP 401
+ +L +I FN+ P
Sbjct: 481 MSTLESIIQFNQTNP 495
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 198 bits (506), Expect = 4e-59
Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 21/296 (7%)
Query: 46 LQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQ 104
L+ K+ +++ ++++E + I + +EV + A+ QA K D+
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAILTP----- 55
Query: 105 LGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEW 164
L GIPI VKDNI+TK + TT S L + P DA V+ +L +AGA+I+GK +M E+
Sbjct: 56 --LAGIPIAVKDNISTKG-IVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEF 112
Query: 165 AHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCP 224
A + E+ + G KNP+ L P GSS GSA +VAA++ SLG+DT SI P
Sbjct: 113 AMGSSTET-----SAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQP 167
Query: 225 SGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATRE 284
+ VVG KPT G +SR G++ + LD +GP ++TV D +LD I G D +D + +
Sbjct: 168 ASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAK 227
Query: 285 ASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGA 340
+P + + LK L+G ++G+V+ EV E FE+ + L + GA
Sbjct: 228 ----VPDPEFFEELKKD-LKGLKVGVVKEFSEEM--DKEVQEKFENALEVLEELGA 276
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 190 bits (486), Expect = 6e-56
Identities = 125/371 (33%), Positives = 182/371 (49%), Gaps = 48/371 (12%)
Query: 31 TESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQA 89
T R+ V ++ + A + +L+ +LVE + L PL V+ + A+ A
Sbjct: 1 TSHRDPDVASLSLTEAAAALRSGRLSCLELVEALLARAAALAPL-NAFTTVDAEGALAAA 59
Query: 90 DKADQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLL 149
+ D +R A A L G+PI++KDNI T M TTAG+ ALLG V DA VV +LL
Sbjct: 60 RRIDAQRAAGAAL---LLAGVPIVIKDNINTAG-MPTTAGTPALLGFVPATDAPVVQRLL 115
Query: 150 EAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMV 209
+AGA+ LGKA+M E A T S NG G +NPY + GSS G+A +VAA +
Sbjct: 116 DAGAVPLGKANMHELAFGIT--SNNG---AFGAVRNPYDPARIAGGSSGGTAAAVAARLA 170
Query: 210 AVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVL 269
LGTDT S+ P+ VVG++PTVG S DGV+P+S DTVGPI+++VAD + +L
Sbjct: 171 PAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVAD-LALL 229
Query: 270 DAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVR-----NLGSNFTISSEV 324
DA++ T +A+ +P P L G RLG+ L +V
Sbjct: 230 DAVI--------TGDAA--LPA--------PVALAGLRLGVPAAPFWDGL------DPDV 265
Query: 325 TEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVT 384
E + L G ++ ++ L + ++ I E L AYL+E
Sbjct: 266 AAVAEAALAKLAAAGVTFVE-LDLPGLHELNEAVG----FPIALYEALADLRAYLRENGA 320
Query: 385 SPVRSLADVIA 395
S +++A
Sbjct: 321 GV--SFEELVA 329
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 160 bits (407), Expect = 1e-44
Identities = 98/317 (30%), Positives = 144/317 (45%), Gaps = 50/317 (15%)
Query: 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGV---IEVNPD-AINQADKADQER 96
T+ L + TSR LVE + I P G V+ D A AD AD R
Sbjct: 6 PTLAALAADLAAGRTTSRALVEAALARIAD--PAGEGARVFTHVDADAARAAADAADALR 63
Query: 97 KAKAPRSQLGLHGIPILVKD--NIATKDKMNTTAGSFALLGSVV-PRDAFVVTKLLEAGA 153
A A S L GIP+ VKD ++A T AGS L + DA V +L AGA
Sbjct: 64 AAGAAPSPLA--GIPVSVKDLFDVA---GQVTRAGSRVLADAPPAAADAPAVARLRRAGA 118
Query: 154 IILGKASMSEWA--------HFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVA 205
+++G+ +M+E+A H+ T P R + P GSSSG+A+SVA
Sbjct: 119 VLIGRTNMTEFAFSGLGLNPHYGT---PRNPWRRDVGD--GRI----PGGSSSGAAVSVA 169
Query: 206 ANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADT 265
M A +LGTDT SI P+ + G KPT + G +P+S LD++GP++++VA
Sbjct: 170 DGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACC 229
Query: 266 VYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVT 325
++DA++ E + L+G RL + + + + + V
Sbjct: 230 A-LVDAVLA----GEEPVVPA-------------ARPLEGLRLAVPTTVVLD-GLDATVA 270
Query: 326 EAFEHHVRTLRQQGAIL 342
AFE ++ L GAI+
Sbjct: 271 AAFERALKRLSAAGAII 287
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 142 bits (361), Expect = 2e-37
Identities = 102/313 (32%), Positives = 145/313 (46%), Gaps = 48/313 (15%)
Query: 42 TIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDA--INQADKADQERKAK 99
T+ L+ A++ LT R +V L + V+ I+ +AD +A
Sbjct: 8 TLASLRAAYRAGTLTPRAVVA----------ALYARIAAVDDPEVWIHLRPEADLLAQAA 57
Query: 100 A----PRSQLGLHGIPILVKDNIATKD--KMNTTAG--SFALLGSVVPRDAFVVTKLLEA 151
A + L L+G+P VKDNI D + TTA +FA RDA VV +L A
Sbjct: 58 ALEARDPAALPLYGVPFAVKDNI---DVAGLPTTAACPAFA---YTPERDATVVARLRAA 111
Query: 152 GAIILGKASMSEWAHFRT----FESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAAN 207
GAI++GK ++ ++A T SP G +N + GSSSGSA++VA
Sbjct: 112 GAIVIGKTNLDQFA---TGLVGTRSPYGAV------RNAFDPEYVSGGSSSGSAVAVALG 162
Query: 208 MVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVY 267
+V+ +LGTDT S P+ N++VG+KPT+GL+S GV+P LD V + TV D
Sbjct: 163 LVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADA 222
Query: 268 VLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEA 327
VL + GFD D +R P L G R+G+ R F +E A
Sbjct: 223 VLAVMAGFDPADPYSRAN-----PADAPAALPA----GPRVGVPRAAQLEFFGDAEAEAA 273
Query: 328 FEHHVRTLRQQGA 340
F + L GA
Sbjct: 274 FAAALARLEALGA 286
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 139 bits (353), Expect = 2e-36
Identities = 88/265 (33%), Positives = 122/265 (46%), Gaps = 30/265 (11%)
Query: 86 INQADKADQERKAKA------PRSQLGLHGIPILVKDNIATKDKMNTTAG--SFALLGSV 137
I+ + D +A A +L L+G+P VKDNI + TTA +FA
Sbjct: 5 ISLLSEEDLLAQAAALDARDARPERLPLYGVPFAVKDNIDVAG-LPTTAACPAFAYTPE- 62
Query: 138 VPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSAD--PCG 195
DA VV L AGAI++GK ++ ++A G R+ G G
Sbjct: 63 --EDATVVALLRAAGAIVVGKTNLDQFA-----TGLVG--TRSPYGAVRNAFDPAYISGG 113
Query: 196 SSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTV 255
SSSGSA++VA +V +LGTDT S P+ N++VG+KPT GL+S GV+P LD V
Sbjct: 114 SSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCV 173
Query: 256 GPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLG 315
+ TVAD VL DA+D +R +P ++F P R+G+ R
Sbjct: 174 SIFALTVADAEQVLRIAAAPDARDPYSRP----LPAAALRRFPPP-----PRVGVPRAAQ 224
Query: 316 SNFTISSEVTEAFEHHVRTLRQQGA 340
F S+ AF V L G
Sbjct: 225 LEFFGDSQAEAAFAAAVERLEALGV 249
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 131 bits (332), Expect = 4e-34
Identities = 98/303 (32%), Positives = 149/303 (49%), Gaps = 28/303 (9%)
Query: 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAK 99
+ ++ A + +L++R + + + I R NP L V + A+ +A + D R A
Sbjct: 7 LSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAG 66
Query: 100 APRSQLG-LHGIPILVKDNIATKDKMNTTAGSFALLGSVVP--RDAFVVTKLLEAGAIIL 156
P LG L G+P VK N+ + T AGS + P RDA V +L AGA+++
Sbjct: 67 EP---LGPLAGVPFAVK-NLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLV 121
Query: 157 GKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTD 216
G +M E+A+ T E+ + G +NP+ L+ GSS GSA +VAA +V +LG+D
Sbjct: 122 GALNMDEYAYGFTTEN-----SHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD 176
Query: 217 TDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFD 276
T+ SI P+ + G+KPT G +SR G P LD +GP +++VAD V D + G D
Sbjct: 177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPD 236
Query: 277 AKD--EATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFT--ISSEVTEAFEHHV 332
+D +A R A P L G +G R+ + LG F E A +
Sbjct: 237 PQDPFQADRPAEPTAP-------LLDRGAEGLRIAV---LGGYFAQWADPEARAAVDRVA 286
Query: 333 RTL 335
+ L
Sbjct: 287 KAL 289
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 125 bits (316), Expect = 8e-32
Identities = 87/300 (29%), Positives = 140/300 (46%), Gaps = 20/300 (6%)
Query: 45 DLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNP--DAINQADKADQERKAKAPR 102
L A ++ Q++ +++ Y+ I R+NP + ++ + + +A + D A
Sbjct: 16 ALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAAL---ARG 72
Query: 103 SQLG-LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASM 161
G LHG+P KD TK + TT GS V DA VV ++ AGAI +GK +
Sbjct: 73 EYRGWLHGMPQAPKDLAPTKG-IRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNT 131
Query: 162 SEWAH-FRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDAS 220
E+ T+ N T NPY S GSS G+A ++A M+ V+ G+D S
Sbjct: 132 PEFGLGSHTY---NPVYGATR---NPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGS 185
Query: 221 ILCPSGSNSVVGIKPTVGLISRDGVIPV-SPRLDTVGPISKTVADTVYVLDAIVGFDAKD 279
+ P+ N+V G +P+ G + V +L T GP+ +TV D +L G+D +D
Sbjct: 186 LRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRD 245
Query: 280 EATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQG 339
+ P + Q L+ L+GKR+ + + G + + V E E + TLR+ G
Sbjct: 246 PLSLAE----DPARFAQPLEAD-LRGKRIAWLGDWGGYLPMEAGVLELCEAALATLRELG 300
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 125 bits (315), Expect = 2e-31
Identities = 96/302 (31%), Positives = 146/302 (48%), Gaps = 40/302 (13%)
Query: 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLN-----PLLRGVIEVNPDAINQAD 90
V E +I +L+ A + + T+ +LV+ Y+ I + L V+ NPDA+ +A+
Sbjct: 2 IEVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAE 61
Query: 91 KADQERKAKAPRSQLG-LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLL 149
+D R+A+ LG L GIP KD+ K + +GS A V RDAF + +L
Sbjct: 62 ASD-ARRARGET--LGPLDGIPYTAKDSYLVKG-LTAASGSPAFKDLVAQRDAFTIERLR 117
Query: 150 EAGAIILGKASMSEWAHFRTFESPNGWCART--GQGKNPY----VLSADPCGSSSGSAIS 203
AGAI LGK +M A NG R G+ ++PY + + GSS+G+ +
Sbjct: 118 AAGAICLGKTNMPPMA--------NGGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTA 169
Query: 204 VAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVA 263
AA+ A L +T +S P+ +N + P+ G+IS G P++P +D V P ++T+A
Sbjct: 170 TAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMA 229
Query: 264 DTVYVLDAIVGFDAKDEATR-------------EASKYIPPGGYKQFLKPHGLQGKRLGI 310
D + VLD IV A D TR +AS+ P L+GKR G+
Sbjct: 230 DLLEVLDVIV---ADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGV 286
Query: 311 VR 312
R
Sbjct: 287 PR 288
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 123 bits (312), Expect = 2e-31
Identities = 92/269 (34%), Positives = 131/269 (48%), Gaps = 51/269 (18%)
Query: 89 ADKADQERKAKAPRSQLG-----LHGIPILVKD--NIATKDKMNTTAGSFALLGSVVP-- 139
++A +E +A + R + G L GIPI KD ++A TTAGS +L + P
Sbjct: 47 EERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVA---GSVTTAGS-VVLANAAPAS 102
Query: 140 RDAFVVTKLLEAGAIILGKASMSEWA--------HFRTFESPNGWCARTGQGKNPYVLSA 191
RDA VV L AG + +G+ +MSE+A H+ T +P T P +
Sbjct: 103 RDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRS----TDV---PRI--- 152
Query: 192 DPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPR 251
P GSSSGSA++VAA +V V++GTDT S+ P+ N +VG K T G S DGV P++
Sbjct: 153 -PGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKS 211
Query: 252 LDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIV 311
LD++GP+ ++V D V++ A+ G A D R L G RL +
Sbjct: 212 LDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRP------------------LAGLRLVVP 253
Query: 312 RNLGSNFTISSEVTEAFEHHVRTLRQQGA 340
+ V AFE V L+ GA
Sbjct: 254 ETV-VFDDAEPGVRAAFEAAVERLQAAGA 281
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 122 bits (308), Expect = 6e-31
Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 11/238 (4%)
Query: 54 QLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPI 112
+LT+ L+E+Y++ I RL+ LR V D A +A+ A Q A L L G+PI
Sbjct: 22 ELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGER---LPLLGVPI 78
Query: 113 LVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFES 172
+KD++ ++ T + G DA VV +L AGA+I+GK ++ E ES
Sbjct: 79 AIKDDVDVAGEVTTYGSAGH--GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTES 136
Query: 173 PNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVG 232
G +NP+ + P GSS GSA +VAA + V+LG+D SI PS + G
Sbjct: 137 -----LAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFG 191
Query: 233 IKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIP 290
+KP IS + L GPI+++V D +LDA + A+ P
Sbjct: 192 LKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAAREP 249
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 122 bits (308), Expect = 7e-31
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 21/274 (7%)
Query: 42 TIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKA 100
+I ++ A + ++++R + E + I + + L V + A+ A + D + A +
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 101 PRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVP--RDAFVVTKLLEAGAIILGK 158
P L G+P VK N+ + T AG+ + + P RDA +V +L AGA+++G
Sbjct: 61 PLGPLA--GVPFAVK-NLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVGA 116
Query: 159 ASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTD 218
+M E+A+ T E+ A G +NP+ L+ GSS GSA +VAA +V SLG+DT+
Sbjct: 117 LNMDEFAYGFTTEN-----AHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTN 171
Query: 219 ASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAK 278
SI P+ V G+KPT G +SR GV P LD VGP +++V D D + G D +
Sbjct: 172 GSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQ 231
Query: 279 DE--ATREASKYIPPGGYKQFLKPHGLQGKRLGI 310
D R A +P P G+ G R+ +
Sbjct: 232 DPFCTDRPAEPTVPL-------LPAGISGLRIAV 258
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 122 bits (308), Expect = 8e-31
Identities = 92/310 (29%), Positives = 139/310 (44%), Gaps = 37/310 (11%)
Query: 54 QLTSRQLVEMYIREIGRLNPL------LRGVIEVNPDAIN-----QADKADQERKAKAPR 102
LT+ +L+ Y R G L+P+ L + +P A+N A+ A +A R
Sbjct: 6 DLTAVELLAAYRR--GELSPVEATQAVLDRIDRRDP-AVNAFCLVDAEGALAAARASEER 62
Query: 103 SQLG-----LHGIPILVKDNIATKDKMNTTAGSFALLGSVV-PRDAFVVTKLLEAGAIIL 156
+ G L G+P+ +KD T+ T GS A+ DA V +L EAGA++L
Sbjct: 63 WRRGEPCGLLDGVPVSIKDIFLTRG-WPTLRGSRAIDADGPWDVDAPAVARLREAGAVLL 121
Query: 157 GKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTD 216
GK + E+ +SP G +NP+ GSS G+A +VA M +S+GTD
Sbjct: 122 GKTTTPEFGWKGVTDSP-----LYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTD 176
Query: 217 TDASILCPSGSNSVVGIKPTVGLISRDGVIPVSP--RLDTVGPISKTVADTVYVLDAIVG 274
S+ P+ G KPT G + + P SP L VGP+++TVAD +LD I
Sbjct: 177 GGGSVRIPASFCGTFGFKPTFGRVP---LYPASPFGTLAHVGPMTRTVADAALLLDVIAR 233
Query: 275 FDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRT 334
DA+D ++ P + L ++G R+ LG + EV V+
Sbjct: 234 PDARD----WSALPPPTTSFLDAL-DRDVRGLRIAYSPTLGY-VDVDPEVAALVAQAVQR 287
Query: 335 LRQQGAILLD 344
L GA + +
Sbjct: 288 LAALGARVEE 297
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 120 bits (302), Expect = 6e-30
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 20/244 (8%)
Query: 45 DLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRS 103
+L A + +++R+ E + + +NP + V++ P+ A+ QAD D R
Sbjct: 12 ELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD-- 69
Query: 104 QLG-LHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMS 162
G L G+P+ VK N+ TT G + P D+ VV L +AGA+I+G+ +
Sbjct: 70 -PGPLAGVPVTVKVNVDQAGFA-TTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTP 127
Query: 163 EWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASIL 222
++ +R F N RT NP+ S P GSS G+A +VAA + A++ GTD SI
Sbjct: 128 AFS-YRWFTD-NPLHGRT---LNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIR 182
Query: 223 CPSGSNSVVGIKPTVGLI------SRDGVIPVSPRLDTV-GPISKTVADTVYVLDAIVGF 275
P+ + V G++PT+G + S + P+ +L +V GP+++TVAD L A+
Sbjct: 183 YPAYACGVHGLRPTLGRVPAYNASSPER--PIGAQLMSVQGPLARTVADLRLALAAMAAP 240
Query: 276 DAKD 279
D +D
Sbjct: 241 DPRD 244
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 120 bits (302), Expect = 8e-30
Identities = 84/239 (35%), Positives = 113/239 (47%), Gaps = 20/239 (8%)
Query: 107 LHGIPILVKDNIATKD--KMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEW 164
L G + +KDN+A MN GS L G V DA VVT+LL+AGA I+GKA+
Sbjct: 88 LAGKTVALKDNVAVAGVPMMN---GSSTLEGFVPSFDATVVTRLLDAGATIVGKATCE-- 142
Query: 165 AHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCP 224
F S + G NP GSSSGSA VAA V +++G D SI P
Sbjct: 143 -DL-CF-SGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIP 199
Query: 225 SGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATRE 284
S + G+KPT GL+ G P+ +D +GP++ TV D +L+ I G D D
Sbjct: 200 SAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPA 259
Query: 285 ASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISS---EVTEAFEHHVRTLRQQGA 340
P Y L G++G ++GI+R F + + EV EA + L GA
Sbjct: 260 Q---PPVDDYTAALD-RGVKGLKIGILR---EGFGLPNSEPEVDEAVRAAAKRLEDLGA 311
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 116 bits (291), Expect = 9e-29
Identities = 85/271 (31%), Positives = 130/271 (47%), Gaps = 54/271 (19%)
Query: 88 QADKADQERKAKAPRSQLG-LHGIPILVKD--NIATKDKMNTTAGSFALLGSVVP--RDA 142
+AD AD R+A LG L G + +KD ++A + T AGS + P DA
Sbjct: 29 EADAADARRRAGRS---LGPLDGRIVSIKDLFDVAGEP---TLAGS-VIRRDAPPAGADA 81
Query: 143 FVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVL----SADPC---- 194
+V +L AGA+I+GK M+E+A T G NP+ + DP
Sbjct: 82 LIVQRLRNAGAVIIGKTHMTEFAF-------------TPVGLNPHYGEPGNAIDPARIPG 128
Query: 195 GSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDT 254
GSSSG+A+SVA +++G+DT S+ P+ N +VG KPT I +G P+SP LD+
Sbjct: 129 GSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDS 188
Query: 255 VGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNL 314
+GP+++TVAD DA++ + L+ + G R+G+ +
Sbjct: 189 IGPLARTVADCA-AADAVMAGEKPIP-----------------LEVLPVAGLRIGLPK-- 228
Query: 315 GSNFT-ISSEVTEAFEHHVRTLRQQGAILLD 344
G + +V AFE + L + GA + D
Sbjct: 229 GYLLADMEPDVAAAFEASLAALEKAGARIAD 259
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 116 bits (292), Expect = 1e-28
Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 21/251 (8%)
Query: 41 ATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADK-ADQERKAK 99
+L A +++S +L ++ I I R + + ++ + D A + AD R
Sbjct: 12 LPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG 71
Query: 100 APRSQLGLHGIPILVKD--NIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILG 157
L GIP+ VK+ N+A + TT G L V DA V +L AGA+ILG
Sbjct: 72 ERGP---LLGIPVTVKESFNVA---GLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILG 125
Query: 158 KASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDT 217
K ++ + ++S N T NP+ L+ P GSS GSA ++AA A+S+G+D
Sbjct: 126 KTNVPL--GLQDWQSYNEIYGTTN---NPWDLARTPGGSSGGSAAALAAGFGALSIGSDI 180
Query: 218 DASILCPSGSNSVVGIKPTVGLISRDGVI-------PVSPRLDTVGPISKTVADTVYVLD 270
S+ P+ V KPT+GL+ G I P L GP++++ D +LD
Sbjct: 181 GGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLD 240
Query: 271 AIVGFDAKDEA 281
+ G D D
Sbjct: 241 VMAGPDPLDGG 251
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 116 bits (292), Expect = 1e-28
Identities = 86/306 (28%), Positives = 142/306 (46%), Gaps = 27/306 (8%)
Query: 42 TIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAK-A 100
+ +L ++ L+ ++ E + I R P L + +P+A A +A R AK
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGE 67
Query: 101 PRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKAS 160
P L G+P+ +K+NIAT+ + G+ A DA +L EAGA+IL K +
Sbjct: 68 PLGPL--DGVPVTIKENIATRG-VPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTT 124
Query: 161 MSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDAS 220
M ++ + G + G +NP+ L +P GSS+G+ + AA + LGTD S
Sbjct: 125 MPDYGMLSS-----GLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGS 179
Query: 221 ILCPSGSNSVVGIKPTVGLISRDGVIPVSP----RLDTVGPISKTVADTVYVLDAIVGFD 276
+ P+G +VG+KP++G IP+ P R GP+++TV D ++ + D
Sbjct: 180 VRLPAGWCGIVGLKPSLGR------IPIDPPYTGR--CAGPMTRTVDDAALLMSVLSRPD 231
Query: 277 AKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLR 336
A+D +PP ++G R+G++ + G + EV A E R
Sbjct: 232 ARD------GTSLPPQDIDWSDLDIDVRGLRIGLMLDAGCGLAVDPEVRAAVEAAARRFE 285
Query: 337 QQGAIL 342
GAI+
Sbjct: 286 AAGAIV 291
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 101 bits (254), Expect = 2e-23
Identities = 78/229 (34%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 55 LTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQERKAKAPRSQLGLHGIPIL 113
+TS +LV +R I P L V + A+ +A +AD+ R A +L L G+PI
Sbjct: 32 VTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAA---GDRLPLLGVPIA 88
Query: 114 VKDNIATKDKMNTTAGSFALLGSVVP--RDAFVVTKLLEAGAIILGKASMSEWAHFRTFE 171
VKD++ + +F G V P D+ VV +L AGA+I+GK + E +
Sbjct: 89 VKDDV----DVAGVPTAFGTAGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTS 144
Query: 172 SPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVV 231
P G +NP+ P GSS GSA +VAA +V ++G+D S+ P+ +V
Sbjct: 145 GPA-----FGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLV 199
Query: 232 GIKPTVGLISRDGVIPVSPRLD-----TV-GPISKTVADTVYVLDAIVG 274
GIKP G IS P + TV GP+++TVAD +LDA G
Sbjct: 200 GIKPQRGRIS------TWPLPEAFNGLTVNGPLARTVADAALLLDAASG 242
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 92.4 bits (230), Expect = 2e-20
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 20/221 (9%)
Query: 49 AFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLG-L 107
A + ++++ ++VE I +NP L + A +A P SQ G
Sbjct: 23 AIRAGRVSAAEVVEAAIARAEAVNPALNALA--------YAAFDRARDRAARPGSQGGFF 74
Query: 108 HGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHF 167
G+P +KDN+ + T GS A D+ + L G I LGK + E+
Sbjct: 75 SGVPTFIKDNVDVAG-LPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFS 133
Query: 168 RTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGS 227
+ E P R G +NP+ SS GSA VAA +V ++ D SI P+
Sbjct: 134 ASTEHP-----RLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAAC 188
Query: 228 NSVVGIKPTVG-LISRDGV--IPVSPRLDTVGPISKTVADT 265
+VG+KP+ G L + +PV + G +++TV DT
Sbjct: 189 CGLVGLKPSRGRLPLDPELRRLPV--NIVANGVLTRTVRDT 227
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 91.1 bits (226), Expect = 4e-20
Identities = 60/156 (38%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 103 SQLGLHGIPILVKDNIATKDKMNTTAGS--FALLGSVVPRDAFVVTKLLEAGAIILGKAS 160
L LHG+ VKD I + T G+ +A S A V +L GA +GK
Sbjct: 23 HDLPLHGLTFAVKD-IFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTI 81
Query: 161 MSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDAS 220
M E A+ S NG A G NP P GSSSGSA++V A +V SLGTDT S
Sbjct: 82 MDEMAY-----SINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGS 136
Query: 221 ILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVG 256
+ P+ + G +P+ G +S GVIP++ DTVG
Sbjct: 137 VRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVG 172
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 89.3 bits (222), Expect = 2e-19
Identities = 56/141 (39%), Positives = 77/141 (54%), Gaps = 5/141 (3%)
Query: 140 RDAFVVTKLLEAGAIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSG 199
R A V KLL AGA +GK E A S NG A G NP P GSSSG
Sbjct: 60 RTAPAVEKLLAAGARFVGKTQTDELAF-----SLNGQNAHYGTPVNPAAPDRVPGGSSSG 114
Query: 200 SAISVAANMVAVSLGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPIS 259
SA +VA + +LGTDT S+ P+ + G++PT G IS +GV+P++P DTVG +
Sbjct: 115 SAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFA 174
Query: 260 KTVADTVYVLDAIVGFDAKDE 280
+ +A V + ++G DA++
Sbjct: 175 RDIALLERVGEVLLGDDAQEF 195
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 83.9 bits (208), Expect = 1e-17
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 23/245 (9%)
Query: 114 VKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFRTFESP 173
+KDN AT + T A S +L +A VV KL+ AGA + K E T
Sbjct: 44 IKDNFATSEGP-THASSKSLENFKPSYNATVVQKLINAGAKPVAKVHCDELGLGGT---- 98
Query: 174 NGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVVGI 233
G + G KNP S GSSSGSA + N ++ ++G+DT S+ P+ VG
Sbjct: 99 -GLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGF 156
Query: 234 KPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFDAKDEATREASKYIPPGG 293
KP+ G ISR G+ + LDTV + V D + + + G D D + +
Sbjct: 157 KPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINN---- 212
Query: 294 YKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEA 353
+ KP K++ + + + V + ++ + L+ + I ++ +I+ E
Sbjct: 213 -VKKTKP-----KKVAYL-DC-FKE-LEEYVAKKYKKLINILKSEN-IEVEKIKID--EK 260
Query: 354 ILNSI 358
+L +I
Sbjct: 261 LLKAI 265
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 72.9 bits (179), Expect = 5e-14
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 49 AFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAPRSQLGLH 108
A +Q Q+T +LV I + +LNP L ++ + ++A +E K + S
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKLNPTLNAIVS------ERYEEALEEAK-QRDFSGKPFA 64
Query: 109 GIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASMSEWAHFR 168
G+PI +KD +T+GS + V +L + G IILG+++ E+ F+
Sbjct: 65 GVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFG-FK 123
Query: 169 TFESPNGWCARTGQGKNPYVLSADPC----GSSSGSAISVAANMVAVSLGTDTDASILCP 224
P L D GSS G+A V++ +VA++ +D SI P
Sbjct: 124 NISD--------SSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIP 175
Query: 225 SGSNSVVGIKPTVGLISRDGVIPVSP 250
+ N ++G+KP SR G IPV P
Sbjct: 176 ASFNGLIGLKP-----SR-GRIPVGP 195
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 30.0 bits (68), Expect = 2.4
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 17 PLIILAVYSSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLR 76
PLI++A S + + F ATI LA N+ T+RQLV L +
Sbjct: 372 PLIVVATQGGKSARSVRKYFPD--ATI----LALTTNEKTARQLV------------LSK 413
Query: 77 GVIEVNPDAINQADKADQERKAKAPRSQLGL 107
GV+ I D D R K Q GL
Sbjct: 414 GVVPQLVKEIASTD--DFYRLGKELALQSGL 442
>gnl|CDD|241526 cd13375, PH_SynGAP, Synaptic Ras-GTPase activating protein
Pleckstrin homology (PH) domain. SynGAP is a member of
the RasSynGAP family along with DOC-2/DAB2-interacting
protein (DAB2IP) and neuronal growth-associated protein
(nGAP/RASAL2). SynGAP, a neuronal Ras-GAP, has been
shown display both Ras-GAP activity and Ras-related
protein (Rap)-GAP activity. Saccharomyces cerevisiae
Bud2 and GAP1 members CAPRI (Ca2+-promoted Ras
inactivator) and RASAL (Ras-GTPase-activating-like
protein) also possess this dual activity. Human
DOC-2/DAB2-interacting protein (DAB2IP) is encoded by a
tumor suppressor gene and a newly recognized member of
the Ras-GTPase-activating family. Members here include
mammals, amphibians, and bony fish. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 189
Score = 28.5 bits (63), Expect = 4.6
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 25 SSGSPATESREFSVKEATIEDLQLAFKQNQLTSRQ---LVEMYIREIGRLNPLLRGVIEV 81
SSG+ R + ++ IE+LQ A K N+ SR+ +++++I E L P R E+
Sbjct: 104 SSGTKCFACRSAAERDKWIENLQRAVKPNKDNSRRVDNVLKLWIIEARDLPPKKRYYCEL 163
Query: 82 NPDAINQADKADQERKAKAPRSQLGLHG 109
D + A R PR+ G
Sbjct: 164 CLDDMLYA------RTTSKPRTDTVFWG 185
>gnl|CDD|204989 pfam12631, GTPase_Cys_C, Catalytic cysteine-containing C-terminus
of GTPase, MnmE. This short C-terminal region contains
the only cysteine present in these proteins. It is
proposed that MnmE is a tRNA-modifying enzyme and that
Cys-451 functions as a catalytic residue in the
modification reaction.
Length = 73
Score = 26.7 bits (60), Expect = 4.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 348 INNLEAILNSIANGETLAILAAEFKQALNA 377
+ LE L ++ +G L ++A + + AL A
Sbjct: 22 LEALERALEALESGLPLDLVAEDLRLALEA 51
>gnl|CDD|176175 cd08486, PBP2_CbnR, The C-terminal substrate binding domain of
LysR-type transcriptional regulator, CbnR, involved in
the chlorocatechol catabolism, contains the type 2
periplasmic binding fold. This CD represents the
substrate binding domain of LysR-type regulator CbnR
which is involved in the regulation of chlorocatechol
breakdown. The chlorocatechol-degradative pathway is
often found in bacteria that can use chlorinated
aromatic compounds as carbon and energy sources. CbnR
is found in the 3-chlorobenzoate degradative bacterium
Ralstonia eutropha NH9 and forms a tetramer. CbnR
activates the expression of the cbnABCD genes, which
are responsible for the degradation of chlorocatechol
converted from 3-chlorobenzoate and are transcribed
divergently from cbnR. The structural topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 198
Score = 28.5 bits (63), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 11 PIFSSLPLIILAVYSSGSPATESREFSVKEATIEDL 46
PI+ SLPL++ A +S AT S K+ +E L
Sbjct: 11 PIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGL 46
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 28.6 bits (64), Expect = 7.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 342 LLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQ 380
LL N INNLE +L I NG +L + L YLQ
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ 154
>gnl|CDD|219728 pfam08146, BP28CT, BP28CT (NUC211) domain. This C terminal domain
is found in BAP28-like nucleolar proteins.
Length = 149
Score = 27.2 bits (61), Expect = 8.3
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 319 TISSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFK 372
+S A + R++ D E++ +EA + S L + + F+
Sbjct: 10 ELSELFLSALD-----FRREQRAKFDLEEVDEIEASVISAFVTMVLKLNESTFR 58
>gnl|CDD|147887 pfam05974, DUF892, Domain of unknown function (DUF892). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 159
Score = 27.5 bits (62), Expect = 8.9
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 18/85 (21%)
Query: 321 SSEVTEAFEHHVRTLRQQGAILLDNFEINNLEAILNSI---ANGETLAI---LAAEFKQA 374
E+ A E H+ Q I LE I + +G+ L AE ++
Sbjct: 33 DPELKAALEQHLEETEGQ---------IERLEQIFERLGESPSGKKCDAMEGLVAEGQEL 83
Query: 375 LNAYLQELVTSPVRSLADVIAFNKM 399
L + V+ A + A +
Sbjct: 84 LEEDAGD---EVVKDAALIAAAQAV 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,224,049
Number of extensions: 1987334
Number of successful extensions: 2056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 49
Length of query: 403
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 304
Effective length of database: 6,546,556
Effective search space: 1990153024
Effective search space used: 1990153024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.7 bits)