RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 041105
(403 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 220 bits (561), Expect = 9e-68
Identities = 97/366 (26%), Positives = 179/366 (48%), Gaps = 24/366 (6%)
Query: 37 SVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPD-AINQADKADQE 95
S++ ++E+L K ++ +V+ I +P ++ + ++ + AI +A + D+
Sbjct: 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61
Query: 96 RKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAII 155
+ +L GIP+ +KDNI T + TT S L G V ++ V+ KL + A++
Sbjct: 62 QAKDQMDGKL--FGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118
Query: 156 LGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGT 215
+GK +M E+A + E+ NP+ A P GSS GSA +VAA +V +SLG+
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTV-----NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173
Query: 216 DTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGF 275
DT SI P+ VVG+KPT G +SR G++ + LD +GP+++ V D VL+AI G
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
Query: 276 DAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRTL 335
D D + + + + ++G ++ + + ++ +V EA ++ V TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKEYL-GEGVADDVKEAVQNAVETL 287
Query: 336 RQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQ---ELVTSPVRSLAD 392
+ GA+ ++ + N + + S I ++E L+ + + SL +
Sbjct: 288 KSLGAV-VEEVSLPNTKFGIPSY-----YVIASSEASSNLSRFDGIRYGYHSKEAHSLEE 341
Query: 393 VIAFNK 398
+ ++
Sbjct: 342 LYKMSR 347
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 184 bits (467), Expect = 4e-54
Identities = 96/344 (27%), Positives = 156/344 (45%), Gaps = 36/344 (10%)
Query: 35 EFSVKEATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQ 94
+ ++ TIE+ K ++ +L ++ + I RL+P ++ I V +
Sbjct: 3 DLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENV--------- 50
Query: 95 ERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAI 154
+ K GIP+ +KDNI T M TT S L DA VV K+ EAG +
Sbjct: 51 SVEKKGK-----FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFV 104
Query: 155 ILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLG 214
++GKA++ E+A + E + R P GSS GSA +V+A MV +LG
Sbjct: 105 VVGKANLDEFAMGSSTERSAFFPTRNPWDLERV-----PGGSSGGSAAAVSAGMVVAALG 159
Query: 215 TDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVG 274
+DT S+ P+ VVG KPT GL+SR G++ + LD +GPI+KTV D +++ I G
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISG 219
Query: 275 FDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHVRT 334
D D + + G+ G + + + I V+E FE ++
Sbjct: 220 RDEND------ATTVNRKVDFLSEIEEGVSGMKFAVPEEIY-EHDIEEGVSERFEEALKL 272
Query: 335 LRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAY 378
L + GA ++ +I +++ + + I AE L +
Sbjct: 273 LERLGAK-VERVKIPHIKYSVATY-----YVIAPAEASSNLARF 310
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 160 bits (404), Expect = 5e-45
Identities = 157/370 (42%), Positives = 214/370 (57%), Gaps = 18/370 (4%)
Query: 36 FSVKEATIEDLQLAFKQNQLTSRQLVEMY---IREIGRLNPLLRGVIEVNPDAINQADKA 92
F E + DLQ +L S L + Y I + R P LR VIE+NPDA+ +A +
Sbjct: 2 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 61
Query: 93 DQERKAKAPRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAG 152
D+ER+ R L HGIP+L+KDNI M T+AGS AL P DA++V +L +AG
Sbjct: 62 DRERRDGRLRGPL--HGIPLLLKDNINAAP-MATSAGSLAL-QGFRPDDAYLVRRLRDAG 117
Query: 153 AIILGKASMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVS 212
A++LGK ++SEWA+FR +S +GW AR GQ +NPY +S PCGSSSGSA++VAAN+ +V+
Sbjct: 118 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 177
Query: 213 LGTDTDASILCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAI 272
+GT+TD SI+CP+ N VVG+KPTVGL+SRDG+IP+S DT GP++++VAD VL AI
Sbjct: 178 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 237
Query: 273 VGFDAKDEATREASKYIPPGGYKQFLKPHGLQGKRLGIVRNLGSNFTISSEVTEAFEHHV 332
G D D AT Y L P GL+GKR + L + + E
Sbjct: 238 AGRDDADPATATMPGRAVY-DYTARLDPQGLRGKR---IGLLQTPLLKYRGMPPLIEQAA 293
Query: 333 RTLRQQGAILLDNFEINNLEAILNSIANGETLAILAAEFKQALNAYLQELVTSPVRSLAD 392
LR+ GA+++ N +L EFK L Y +P+RSLAD
Sbjct: 294 TELRRAGAVVVPVELPNQGAWAEAE------RTLLLYEFKAGLERYFNTH-RAPLRSLAD 346
Query: 393 VIAFNKMFPE 402
+IAFN+ +
Sbjct: 347 LIAFNQAHSK 356
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 134 bits (338), Expect = 2e-35
Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 19/244 (7%)
Query: 40 EATIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAK 99
+ L + +L+ + Y+ + +N V D Q +A ++
Sbjct: 40 TLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL-- 97
Query: 100 APRSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKA 159
L+G+P+ +K+ + K ++T G G D VV L GA+
Sbjct: 98 -------LYGVPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHT 149
Query: 160 SMSEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDA 219
++ + +P NP+ S P GSS G + + + LGTD
Sbjct: 150 NVPQSMLSFDCSNPLFGQTM-----NPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGG 204
Query: 220 SILCPSGSNSVVGIKPTVGLISRDGVIPV----SPRLDTVGPISKTVADTVYVLDAIVGF 275
SI PS + G+KPT +S+ G+ + ++GP+++ V L A++
Sbjct: 205 SIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCE 264
Query: 276 DAKD 279
Sbjct: 265 HLFT 268
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 109 bits (271), Expect = 6e-27
Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 26/235 (11%)
Query: 42 TIEDLQLAFKQNQLTSRQLVEMYIREIGRLNPLLRGVIEVNPDAINQADKADQERKAKAP 101
++ DLQ + +L+ + I + + + A +A P
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSA---------RAQASGP 53
Query: 102 RSQLGLHGIPILVKDNIATKDKMNTTAGSFALLGSVVPRDAFVVTKLLEAGAIILGKASM 161
L GI + +KD I T + M T GS G DA VV L AGA I+GK +
Sbjct: 54 -----LRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 162 SEWAHFRTFESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASI 221
+ +A + N G + SGSA +V A M+ ++LGT T S+
Sbjct: 108 TAFASRDPTATLNPHNTGHSPGGSS-----------SGSAAAVGAGMIPLALGTQTGGSV 156
Query: 222 LCPSGSNSVVGIKPTVGLISRDGVIPVSPRLDTVGPISKTVADTVYVLDAIVGFD 276
+ P+ IKP+ ++ GV S LDTVG D L A+ G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS 211
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.1 bits (64), Expect = 0.81
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 361 GETLAILAAEFKQALNAYLQELVTSPVRSLADVIA 395
G+T L A ++A+ L+ L+ +P R +A +
Sbjct: 21 GKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEME 55
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 25.9 bits (56), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 60 LVEMYIREIGRLNPLLRGVIEV 81
V Y+ EIG++ PLL E+
Sbjct: 3 PVRQYLHEIGQV-PLLTLEEEI 23
>d1rqwa_ b.25.1.1 (A:) Thaumatin {Ketemfe (Thaumatococcus daniellii)
[TaxId: 4621]}
Length = 207
Score = 26.1 bits (57), Expect = 6.9
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 183 GKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNSVV 231
+ Y + CG + S A S D ++ CP SN V
Sbjct: 153 QTSEYCCTTGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRV 201
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta
subunit HrcB, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 216
Score = 25.8 bits (56), Expect = 7.9
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 170 FESPNGWCARTGQGKNPYVLSADPCGSSSGSAISVAANMVAVSLGTDTDASILCPSGSNS 229
+ S NG+C + K ++ +D C ++ ++ + D A I+ P+G +
Sbjct: 131 WRSGNGYCLKYKGDKCHVIVKSDRCYATY------HGDVAPALMVLDARAEIVGPAGKRT 184
Query: 230 V 230
V
Sbjct: 185 V 185
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc
hemocyanin {Giant octopus (Octopus dofleini) [TaxId:
267067]}
Length = 101
Score = 25.0 bits (55), Expect = 9.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 107 LHGIPI--LVKDNIATKDKMNTTAGSFALLGS 136
L I V ++ TKD T G+F +LG
Sbjct: 10 LRTIGQSADVNFDVCTKDGECTFGGTFCILGG 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,371,198
Number of extensions: 61156
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 14
Length of query: 403
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,213,086
Effective search space: 383335176
Effective search space used: 383335176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)