Query 041106
Match_columns 83
No_of_seqs 106 out of 638
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03220 uncharacterized prote 100.0 5.3E-30 1.2E-34 172.4 7.1 79 1-79 1-102 (105)
2 PLN03090 auxin-responsive fami 100.0 7.2E-30 1.6E-34 171.5 7.2 79 1-81 1-104 (104)
3 PLN03219 uncharacterized prote 99.9 4.1E-25 8.8E-30 149.4 6.3 80 1-80 1-105 (108)
4 PF02519 Auxin_inducible: Auxi 99.9 5.1E-25 1.1E-29 146.2 6.7 79 1-81 1-100 (100)
5 COG1759 5-formaminoimidazole-4 59.9 4.5 9.8E-05 32.6 1.0 26 31-56 88-114 (361)
6 PRK13277 5-formaminoimidazole- 58.6 3.5 7.6E-05 33.1 0.2 25 31-55 88-113 (366)
7 PF06849 DUF1246: Protein of u 52.3 0.33 7.2E-06 33.8 -5.7 27 31-57 68-95 (124)
8 PF15387 DUF4611: Domain of un 36.8 29 0.00063 23.3 1.9 20 62-81 13-36 (96)
9 PF02214 BTB_2: BTB/POZ domain 32.5 62 0.0013 19.7 2.9 23 60-82 40-62 (94)
10 COG0545 FkpA FKBP-type peptidy 25.8 37 0.0008 25.5 1.1 27 40-69 164-192 (205)
11 KOG0549 FKBP-type peptidyl-pro 25.2 24 0.00052 26.2 0.0 34 34-70 129-164 (188)
12 PF04019 DUF359: Protein of un 23.3 74 0.0016 21.7 2.1 44 35-81 61-116 (121)
13 cd04751 Commd3 COMM_Domain con 23.2 96 0.0021 19.9 2.6 20 62-81 65-84 (95)
14 PHA00672 hypothetical protein 23.0 94 0.002 22.3 2.7 38 33-71 72-120 (152)
15 PF11822 DUF3342: Domain of un 21.6 86 0.0019 24.9 2.5 21 62-82 47-67 (317)
16 PF10513 EPL1: Enhancer of pol 21.2 80 0.0017 21.4 2.0 17 66-82 143-159 (160)
17 COG3251 Uncharacterized protei 20.5 2.4E+02 0.0053 17.9 4.2 46 28-77 3-49 (71)
18 PF04970 LRAT: Lecithin retino 20.0 67 0.0015 20.9 1.4 11 36-46 21-31 (125)
No 1
>PLN03220 uncharacterized protein; Provisional
Probab=99.96 E-value=5.3e-30 Score=172.45 Aligned_cols=79 Identities=48% Similarity=0.870 Sum_probs=67.1
Q ss_pred CccccCchhhh-hhhcccccccccccC-CcccccCCCceEEEEEcCC---cceeeEEe------------------ccCc
Q 041106 1 MGIRVLGFIPA-KQILPHSVLTTKNKE-ASTCADVPKGFLSVYVGEN---QKKRFLVP------------------EFGF 57 (83)
Q Consensus 1 m~~r~~~i~~~-k~~l~r~~~~~~~~~-~~~~~~vpkG~~aVYVG~~---~~~RFvVp------------------EfGf 57 (83)
||+++++|..+ ||+|+||+...+++. ++.+.+|||||||||||++ ..+||||| ||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999966 999999995433333 3567799999999999982 23999999 9999
Q ss_pred cCCCCceEeeCCHHHHHHHHHH
Q 041106 58 NYPMGASTIPSGQDTFIEVISR 79 (83)
Q Consensus 58 ~~~~G~L~IPC~~~~F~~vl~~ 79 (83)
+|++|+|+|||+++.|+++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9977999999999999999864
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=99.96 E-value=7.2e-30 Score=171.54 Aligned_cols=79 Identities=38% Similarity=0.551 Sum_probs=69.0
Q ss_pred CccccCc----hhhhhhhcccccccccccC---CcccccCCCceEEEEEcCCcceeeEEe------------------cc
Q 041106 1 MGIRVLG----FIPAKQILPHSVLTTKNKE---ASTCADVPKGFLSVYVGENQKKRFLVP------------------EF 55 (83)
Q Consensus 1 m~~r~~~----i~~~k~~l~r~~~~~~~~~---~~~~~~vpkG~~aVYVG~~~~~RFvVp------------------Ef 55 (83)
||++..+ |+++||+|+||+|.+.+.+ ...+.+|||||||||||+++ +||+|| ||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7777554 6788999999999876543 34678999999999999987 999999 99
Q ss_pred CccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 56 GFNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 56 Gf~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
||+|+ |+|+|||+++.|++++|+|+
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~ 104 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMIR 104 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence 99998 89999999999999999983
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=99.91 E-value=4.1e-25 Score=149.40 Aligned_cols=80 Identities=43% Similarity=0.697 Sum_probs=62.8
Q ss_pred CccccCchhhhhhhccccccccccc------CCcccccCCCceEEEEEcCC-cceeeEEe------------------cc
Q 041106 1 MGIRVLGFIPAKQILPHSVLTTKNK------EASTCADVPKGFLSVYVGEN-QKKRFLVP------------------EF 55 (83)
Q Consensus 1 m~~r~~~i~~~k~~l~r~~~~~~~~------~~~~~~~vpkG~~aVYVG~~-~~~RFvVp------------------Ef 55 (83)
||..-.-+..|||+.+..+...++. ..+.+.+|||||+|||||++ +.+||||| ||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 6666666778999887444433232 23455789999999999983 24999999 99
Q ss_pred CccCCCCceEeeCCHHHHHHHHHHh
Q 041106 56 GFNYPMGASTIPSGQDTFIEVISRL 80 (83)
Q Consensus 56 Gf~~~~G~L~IPC~~~~F~~vl~~l 80 (83)
||+|++|+|+|||+++.|+++++.-
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 9998779999999999999999863
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=99.91 E-value=5.1e-25 Score=146.18 Aligned_cols=79 Identities=37% Similarity=0.624 Sum_probs=60.9
Q ss_pred CccccCchhhhhhhcccccccccc---cCCcccccCCCceEEEEEcCCcceeeEEe------------------ccCccC
Q 041106 1 MGIRVLGFIPAKQILPHSVLTTKN---KEASTCADVPKGFLSVYVGENQKKRFLVP------------------EFGFNY 59 (83)
Q Consensus 1 m~~r~~~i~~~k~~l~r~~~~~~~---~~~~~~~~vpkG~~aVYVG~~~~~RFvVp------------------EfGf~~ 59 (83)
|-.++..+..+++...++...... +.++...++|+||++||||+++ +||+|| ||||+|
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 455666666666555444432211 2233348899999999999987 999999 999999
Q ss_pred CCCceEeeCCHHHHHHHHHHhh
Q 041106 60 PMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 60 ~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
+ |+|+|||+++.|++++|+|+
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHhC
Confidence 7 99999999999999999986
No 5
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=59.93 E-value=4.5 Score=32.63 Aligned_cols=26 Identities=38% Similarity=0.712 Sum_probs=20.1
Q ss_pred ccCCCceEEEEEcCC-cceeeEEeccC
Q 041106 31 ADVPKGFLSVYVGEN-QKKRFLVPEFG 56 (83)
Q Consensus 31 ~~vpkG~~aVYVG~~-~~~RFvVpEfG 56 (83)
--+|.|-|++|||-+ .-..|.||-||
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~fG 114 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPMFG 114 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcccc
Confidence 358999999999954 23779999544
No 6
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=58.55 E-value=3.5 Score=33.12 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=19.6
Q ss_pred ccCCCceEEEEEcCCcce-eeEEecc
Q 041106 31 ADVPKGFLSVYVGENQKK-RFLVPEF 55 (83)
Q Consensus 31 ~~vpkG~~aVYVG~~~~~-RFvVpEf 55 (83)
--+|-|-|++|||-+... .|.||-|
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp~f 113 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVPIF 113 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCCcc
Confidence 358999999999976434 7999933
No 7
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=52.31 E-value=0.33 Score=33.79 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=16.3
Q ss_pred ccCCCceEEEEEcCCcc-eeeEEeccCc
Q 041106 31 ADVPKGFLSVYVGENQK-KRFLVPEFGF 57 (83)
Q Consensus 31 ~~vpkG~~aVYVG~~~~-~RFvVpEfGf 57 (83)
--||-|-|++|||-++. .+|.||=||=
T Consensus 68 I~VPhgSfv~Y~G~d~ie~~~~vP~FGN 95 (124)
T PF06849_consen 68 IFVPHGSFVAYVGYDRIENEFKVPIFGN 95 (124)
T ss_dssp EE--BTTHHHHH-HHHHHHT-SS-EES-
T ss_pred EEecCCCeeEeecHHHHhhcCCCCeecC
Confidence 45899999999997643 4599997774
No 8
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=36.78 E-value=29 Score=23.27 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.6
Q ss_pred CceEeeCC----HHHHHHHHHHhh
Q 041106 62 GASTIPSG----QDTFIEVISRLD 81 (83)
Q Consensus 62 G~L~IPC~----~~~F~~vl~~l~ 81 (83)
-.|++||+ .+-|+.||+-+.
T Consensus 13 q~lrv~ce~p~~~d~~q~LlsGva 36 (96)
T PF15387_consen 13 QRLRVPCEAPGDADPFQGLLSGVA 36 (96)
T ss_pred ceEEEeeecCCCcccHHHHHHHHH
Confidence 46999998 578888887654
No 9
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=32.47 E-value=62 Score=19.72 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.9
Q ss_pred CCCceEeeCCHHHHHHHHHHhhc
Q 041106 60 PMGASTIPSGQDTFIEVISRLDR 82 (83)
Q Consensus 60 ~~G~L~IPC~~~~F~~vl~~l~~ 82 (83)
+.|.+-|-++...|++|+..+..
T Consensus 40 ~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 40 DDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp TTTEEEESS-HHHHHHHHHHHHH
T ss_pred ccceEEeccChhhhhHHHHHHhh
Confidence 34899999999999999998753
No 10
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=37 Score=25.49 Aligned_cols=27 Identities=26% Similarity=0.667 Sum_probs=18.0
Q ss_pred EEEcCCcceeeEEe-ccCccCCCC-ceEeeCC
Q 041106 40 VYVGENQKKRFLVP-EFGFNYPMG-ASTIPSG 69 (83)
Q Consensus 40 VYVG~~~~~RFvVp-EfGf~~~~G-~L~IPC~ 69 (83)
+-||++ +|+.|| +.+|-.+ | +-.||=+
T Consensus 164 M~vG~k--~~l~IP~~laYG~~-g~~g~Ippn 192 (205)
T COG0545 164 MKVGGK--RKLTIPPELAYGER-GVPGVIPPN 192 (205)
T ss_pred CCCCce--EEEEeCchhccCcC-CCCCCCCCC
Confidence 444554 899999 8888776 4 2337744
No 11
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.24 E-value=24 Score=26.22 Aligned_cols=34 Identities=29% Similarity=0.788 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCcceeeEEe-ccCccCCCC-ceEeeCCH
Q 041106 34 PKGFLSVYVGENQKKRFLVP-EFGFNYPMG-ASTIPSGQ 70 (83)
Q Consensus 34 pkG~~aVYVG~~~~~RFvVp-EfGf~~~~G-~L~IPC~~ 70 (83)
.+|..-..|||. |+-+|| ++||-.+ | +-.||=++
T Consensus 129 Dqgl~gMCvGEk--Rkl~IPp~LgYG~~-G~~~~IP~~A 164 (188)
T KOG0549|consen 129 DQGLLGMCVGEK--RKLIIPPHLGYGER-GAPPKIPGDA 164 (188)
T ss_pred hHHhhhhCcccc--eEEecCccccCccC-CCCCCCCCCe
Confidence 466777888885 899999 9999876 4 34477554
No 12
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=23.31 E-value=74 Score=21.65 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=32.5
Q ss_pred CceEEEEE-cCCcceeeEEe-----------ccCccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 35 KGFLSVYV-GENQKKRFLVP-----------EFGFNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 35 kG~~aVYV-G~~~~~RFvVp-----------EfGf~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
.+...++| ||| .--++| -||-... |...++++.+.-.++.+.|+
T Consensus 61 ~~~~~I~V~GEE--DL~~lPail~aP~gs~V~YGQP~e-GvV~v~v~~~~k~~~~~ll~ 116 (121)
T PF04019_consen 61 GKPVVIFVDGEE--DLAVLPAILYAPEGSVVLYGQPGE-GVVLVKVTEEAKRRARELLK 116 (121)
T ss_pred CCCEEEEEeChH--HHHHHHHHHhCCCCCEEEECCCCC-eEEEEEeCHHHHHHHHHHHH
Confidence 56677888 555 666777 7888776 88999999877776666654
No 13
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=23.20 E-value=96 Score=19.87 Aligned_cols=20 Identities=5% Similarity=0.232 Sum_probs=18.0
Q ss_pred CceEeeCCHHHHHHHHHHhh
Q 041106 62 GASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 62 G~L~IPC~~~~F~~vl~~l~ 81 (83)
..+.+-|+++.|++++..|+
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 47999999999999998775
No 14
>PHA00672 hypothetical protein
Probab=22.97 E-value=94 Score=22.27 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCCceEEEEEcCCcceeeEEe----------ccCccCCCCc-eEeeCCHH
Q 041106 33 VPKGFLSVYVGENQKKRFLVP----------EFGFNYPMGA-STIPSGQD 71 (83)
Q Consensus 33 vpkG~~aVYVG~~~~~RFvVp----------EfGf~~~~G~-L~IPC~~~ 71 (83)
.-+|+..||+|++- +|.--| .-||.|.+-. .+|-|.++
T Consensus 72 i~sG~itV~tdge~-~rl~g~~~i~~~aG~KragyAHeDT~wt~~h~see 120 (152)
T PHA00672 72 IFSGHATVFIGGEA-VELRGYHVIPASAGRKQAFVAHADTDLTMLFPSEA 120 (152)
T ss_pred EecccEEEEeCCcE-EEEecceeeecCCCcccceeeeccceEEEEecccc
Confidence 56899999999876 776554 5688886443 55667653
No 15
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=21.64 E-value=86 Score=24.94 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=18.0
Q ss_pred CceEeeCCHHHHHHHHHHhhc
Q 041106 62 GASTIPSGQDTFIEVISRLDR 82 (83)
Q Consensus 62 G~L~IPC~~~~F~~vl~~l~~ 82 (83)
=.|.+-||+..|+.++..+++
T Consensus 47 idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 47 IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred cceEEecChhHHHHHHHHhhc
Confidence 368999999999999988764
No 16
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=21.25 E-value=80 Score=21.37 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=14.9
Q ss_pred eeCCHHHHHHHHHHhhc
Q 041106 66 IPSGQDTFIEVISRLDR 82 (83)
Q Consensus 66 IPC~~~~F~~vl~~l~~ 82 (83)
.+++++.||.++..|++
T Consensus 143 ~~ls~~~FE~~md~lEk 159 (160)
T PF10513_consen 143 EPLSEEDFEIIMDRLEK 159 (160)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 56999999999999875
No 17
>COG3251 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.54 E-value=2.4e+02 Score=17.93 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=28.3
Q ss_pred cccccCCCceEEEEEcCCcceeeEE-eccCccCCCCceEeeCCHHHHHHHH
Q 041106 28 STCADVPKGFLSVYVGENQKKRFLV-PEFGFNYPMGASTIPSGQDTFIEVI 77 (83)
Q Consensus 28 ~~~~~vpkG~~aVYVG~~~~~RFvV-pEfGf~~~~G~L~IPC~~~~F~~vl 77 (83)
+.+.+-|.|+|-|.|.+| .+|-+ |+| -.-| ++..+-|....=+.-+
T Consensus 3 s~~fd~~~~~f~vlvN~e--~QySLWP~~-~~iP-aGW~~v~~~~sr~aCl 49 (71)
T COG3251 3 SNPFDDPQGQFYVLVNDE--GQYSLWPVF-CAIP-AGWRVVHEPGSREACL 49 (71)
T ss_pred CCCCCCCCceEEEEEcCc--cccccchhc-cCCC-ccceeecccccHHHHH
Confidence 456688999999999987 34443 232 2234 5677777654433333
No 18
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=20.03 E-value=67 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.743 Sum_probs=8.9
Q ss_pred ceEEEEEcCCc
Q 041106 36 GFLSVYVGENQ 46 (83)
Q Consensus 36 G~~aVYVG~~~ 46 (83)
=|.+||||+.+
T Consensus 21 ~H~gIYvG~~~ 31 (125)
T PF04970_consen 21 EHWGIYVGDGE 31 (125)
T ss_dssp EEEEEEEETTE
T ss_pred cEEEEEecCCe
Confidence 38999999864
Done!