Query 041106
Match_columns 83
No_of_seqs 106 out of 638
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l48_A Outer membrane usher pr 63.2 6.4 0.00022 24.5 3.0 37 33-71 51-87 (94)
2 1s1g_A Potassium voltage-gated 52.7 43 0.0015 21.5 6.7 45 34-81 11-72 (124)
3 2lkt_A Retinoic acid receptor 36.1 15 0.0005 23.2 1.4 10 37-46 23-32 (125)
4 2nz0_B Potassium voltage-gated 23.5 1.6E+02 0.0054 19.2 7.2 46 33-81 32-94 (140)
5 1nn7_A Potassium channel KV4.2 18.8 1.3E+02 0.0045 18.4 3.5 21 61-81 39-59 (105)
6 3fuy_A HFX_CASS1, putative int 17.9 43 0.0015 23.0 1.1 14 54-69 84-97 (179)
7 3kvt_A Potassium channel prote 16.7 2.1E+02 0.0071 17.9 4.8 25 57-81 41-65 (115)
8 3drx_A BTB/POZ domain-containi 15.4 3.1E+02 0.011 19.2 5.9 42 36-81 12-75 (202)
9 3vpi_A Type VI secretion expor 14.9 83 0.0028 22.0 1.9 14 32-45 106-119 (174)
10 4f0w_A Effector TSE1, putative 14.4 86 0.003 22.1 1.9 14 32-45 120-133 (188)
No 1
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=63.24 E-value=6.4 Score=24.50 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCCceEEEEEcCCcceeeEEeccCccCCCCceEeeCCHH
Q 041106 33 VPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQD 71 (83)
Q Consensus 33 vpkG~~aVYVG~~~~~RFvVpEfGf~~~~G~L~IPC~~~ 71 (83)
.++|.+-|.-|++.+.++.+|+- +-..|+|-+||...
T Consensus 51 ~~~g~L~V~Wg~~~~C~i~lp~~--~~~~~~~~l~~~~~ 87 (94)
T 3l48_A 51 TPGETLSVNWDGKIQCQVNVPET--AISDQQLLLPCTPQ 87 (94)
T ss_dssp CTTCEEEEECSSSEEEEEECCTT--CCTTEEEEEEEBCC
T ss_pred CCCCEEEEEECCCCeEEEECCCc--cccCCcEEEecCcc
Confidence 46788888777754478888866 44458999999754
No 2
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=52.72 E-value=43 Score=21.51 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCcceeeEEe-----------------ccCccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 34 PKGFLSVYVGENQKKRFLVP-----------------EFGFNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 34 pkG~~aVYVG~~~~~RFvVp-----------------EfGf~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
....+.+-||. .||.+. ..-++.+.|..-|-.+...|..||..+.
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR 72 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 72 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTTSSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCCceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh
Confidence 45678888887 778887 1123334589999999999999998875
No 3
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=36.14 E-value=15 Score=23.21 Aligned_cols=10 Identities=20% Similarity=0.700 Sum_probs=8.8
Q ss_pred eEEEEEcCCc
Q 041106 37 FLSVYVGENQ 46 (83)
Q Consensus 37 ~~aVYVG~~~ 46 (83)
|.+||||+..
T Consensus 23 H~gIYvGdg~ 32 (125)
T 2lkt_A 23 HWALYIGDGY 32 (125)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEeCCCe
Confidence 9999999864
No 4
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=23.51 E-value=1.6e+02 Score=19.21 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCCceEEEEEcCCcceeeEEe-----------------ccCccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 33 VPKGFLSVYVGENQKKRFLVP-----------------EFGFNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 33 vpkG~~aVYVG~~~~~RFvVp-----------------EfGf~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
.....+.+-||. .||.+. ..-++.+.|..-|-.+...|.+||..+.
T Consensus 32 ~~~~~V~LNVGG---~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR 94 (140)
T 2nz0_B 32 RQDELIVLNVSG---RRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR 94 (140)
T ss_dssp TCCCEEEEEETT---EEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECC---EEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh
Confidence 345688889997 788888 1123334589999999999999999875
No 5
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=18.75 E-value=1.3e+02 Score=18.40 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=16.8
Q ss_pred CCceEeeCCHHHHHHHHHHhh
Q 041106 61 MGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 61 ~G~L~IPC~~~~F~~vl~~l~ 81 (83)
.|..-|-.+...|.+||..+.
T Consensus 39 ~~~~FiDRdp~~F~~ILnflR 59 (105)
T 1nn7_A 39 TQQYFFDRDPDIFRHILNFYR 59 (105)
T ss_dssp GTEEEECSCTTTHHHHHHHHH
T ss_pred CCcEEEeCCcHHHHHHHHHHh
Confidence 377888888888888888764
No 6
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 2.00A {Uncultured bacterium}
Probab=17.91 E-value=43 Score=23.05 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=11.4
Q ss_pred ccCccCCCCceEeeCC
Q 041106 54 EFGFNYPMGASTIPSG 69 (83)
Q Consensus 54 EfGf~~~~G~L~IPC~ 69 (83)
||||..| -|.|-|-
T Consensus 84 efgfkgp--hirircv 97 (179)
T 3fuy_A 84 EFGFKGP--HIRIRCV 97 (179)
T ss_dssp STTCCCC--EEEEEEE
T ss_pred ccccCCC--ceEEEEe
Confidence 9999866 5899883
No 7
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=16.75 E-value=2.1e+02 Score=17.86 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=17.5
Q ss_pred ccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 57 FNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 57 f~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
++.+.|..-|--+...|.+|+..+.
T Consensus 41 ~~~~~g~~FiDRdp~~F~~ILnylR 65 (115)
T 3kvt_A 41 YDPVLNEYFFDRHPGVFAQIINYYR 65 (115)
T ss_dssp EETTTTEEEECSCTTTHHHHHHHHH
T ss_pred CCCCCCcEEEecChHHHHHHHHHhc
Confidence 3334477778888888888887664
No 8
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=15.40 E-value=3.1e+02 Score=19.20 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=30.8
Q ss_pred ceEEEEEcCCcceeeEEe--------------------ccC--ccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 36 GFLSVYVGENQKKRFLVP--------------------EFG--FNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 36 G~~aVYVG~~~~~RFvVp--------------------EfG--f~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
-.+.+-||. .||.+. ++. .+ +.|.+-|..+...|.+|+..+.
T Consensus 12 ~~V~LNVGG---~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~D-e~geyFIDRDP~~F~~ILnyLR 75 (202)
T 3drx_A 12 KWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKD-ETGAYLIDRDPTYFGPVLNYLR 75 (202)
T ss_dssp CEEEEEETT---EEEEEETTGGGSCTTSSTHHHHSCCCC----BC-TTCCEEECSCSTTHHHHHHHHH
T ss_pred CEEEEEECC---EEEEEeHHHHhCCCcchHHHHhcCccccCcccC-CCccEEecCChHHHHHHHHHhc
Confidence 477888886 678877 121 22 2388999999999999998775
No 9
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A {Pseudomonas aeruginosa} PDB: 3vpj_A
Probab=14.89 E-value=83 Score=22.00 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.5
Q ss_pred cCCCceEEEEEcCC
Q 041106 32 DVPKGFLSVYVGEN 45 (83)
Q Consensus 32 ~vpkG~~aVYVG~~ 45 (83)
..+-||+|||+|..
T Consensus 106 ~~~hGHVvIvigGp 119 (174)
T 3vpi_A 106 GRTYGHVAVVISGP 119 (174)
T ss_dssp CSSCCEEEEECCSC
T ss_pred cCCCceEEEEeCCc
Confidence 45789999999875
No 10
>4f0w_A Effector TSE1, putative uncharacterized protein; NLPC/P60 domain, hydrolase; 1.24A {Pseudomonas aeruginosa} PDB: 4f0v_A 4f4m_A 4fge_A 4fgd_A 4fgi_A 4eq8_A* 4eob_A* 4eqa_A
Probab=14.43 E-value=86 Score=22.12 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=11.5
Q ss_pred cCCCceEEEEEcCC
Q 041106 32 DVPKGFLSVYVGEN 45 (83)
Q Consensus 32 ~vpkG~~aVYVG~~ 45 (83)
..+-||+|||++..
T Consensus 120 ~~~hGHVaIvigGp 133 (188)
T 4f0w_A 120 GRTYGHVAVVISGP 133 (188)
T ss_dssp CSSCCEEEEECSSC
T ss_pred cCCCceEEEEeCCc
Confidence 45789999999875
Done!