Query 041106
Match_columns 83
No_of_seqs 106 out of 638
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 05:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r85a1 c.30.1.8 (A:1-99) 5-fo 70.2 0.042 3E-06 34.4 -4.9 27 31-57 65-91 (99)
2 d2pbza1 c.30.1.8 (A:4-99) 5-fo 65.5 0.06 4.3E-06 33.5 -4.8 28 30-57 59-86 (96)
3 d2r7ka1 c.30.1.8 (A:1-123) 5-f 46.8 0.16 1.2E-05 32.8 -5.4 27 31-57 88-115 (123)
4 d1j3ba2 c.109.1.1 (A:2-211) Ph 38.7 18 0.0013 24.2 4.0 48 33-80 36-89 (210)
5 d2nt0a1 b.71.1.2 (A:1-77,A:432 34.4 26 0.0019 21.7 4.1 38 29-66 28-67 (143)
6 d1nn7a_ d.42.1.2 (A:) Potassiu 34.1 22 0.0016 20.6 3.5 23 59-81 37-59 (105)
7 d2olra2 c.109.1.1 (A:6-227) Ph 32.4 29 0.0021 23.2 4.3 48 33-80 45-104 (222)
8 d3kvta_ d.42.1.2 (A:) akv3.1 v 31.9 42 0.0031 19.1 4.8 25 57-81 38-62 (103)
9 d1owxa_ d.58.7.1 (A:) Lupus LA 27.2 18 0.0013 20.8 2.2 15 30-44 4-18 (113)
10 d1t1da_ d.42.1.2 (A:) Shaker p 26.5 54 0.0039 18.6 4.4 24 58-81 38-61 (100)
11 d1ii2a2 c.109.1.1 (A:2-200) Ph 26.2 20 0.0015 23.6 2.5 48 33-80 27-80 (199)
No 1
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=70.21 E-value=0.042 Score=34.43 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=22.0
Q ss_pred ccCCCceEEEEEcCCcceeeEEeccCc
Q 041106 31 ADVPKGFLSVYVGENQKKRFLVPEFGF 57 (83)
Q Consensus 31 ~~vpkG~~aVYVG~~~~~RFvVpEfGf 57 (83)
--+|-|.|++|+|-+..+.|-||-||=
T Consensus 65 I~IPhgSfv~Y~G~d~ie~~~VP~FGn 91 (99)
T d2r85a1 65 VVVPTGSFVAHLGIELVENMKVPYFGN 91 (99)
T ss_dssp EECCCTTHHHHHCHHHHHTCCSCBBSC
T ss_pred EEecCCCEEEEEcHHHHhcCCCCcccC
Confidence 358999999999976445699998884
No 2
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=65.50 E-value=0.06 Score=33.54 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=22.4
Q ss_pred cccCCCceEEEEEcCCcceeeEEeccCc
Q 041106 30 CADVPKGFLSVYVGENQKKRFLVPEFGF 57 (83)
Q Consensus 30 ~~~vpkG~~aVYVG~~~~~RFvVpEfGf 57 (83)
.--+|-|.|++|+|-+..+.+.||-||=
T Consensus 59 aI~IPhgSfv~Y~G~~~ie~~~VP~FGN 86 (96)
T d2pbza1 59 GIVVPHGSFVAYLGIEAIEKAKARFFGN 86 (96)
T ss_dssp SBCCCBTTHHHHSCHHHHHTCCSCCBSC
T ss_pred eEEEcCCCEEEEecHHHHhhCCCCcccC
Confidence 3468999999999976546688998874
No 3
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=46.76 E-value=0.16 Score=32.75 Aligned_cols=27 Identities=41% Similarity=0.690 Sum_probs=22.1
Q ss_pred ccCCCceEEEEEcCCcc-eeeEEeccCc
Q 041106 31 ADVPKGFLSVYVGENQK-KRFLVPEFGF 57 (83)
Q Consensus 31 ~~vpkG~~aVYVG~~~~-~RFvVpEfGf 57 (83)
--+|-|.|++|+|-++. ..|.||-||=
T Consensus 88 I~IPhgSfv~Y~G~~~ie~~~~VP~FGn 115 (123)
T d2r7ka1 88 IVVPHGSFIAYCGLDNVENSFLVPMFGN 115 (123)
T ss_dssp EECCBHHHHHHHCHHHHHHTCCSCBBSC
T ss_pred EEecCCCeeeeecHHHHHhcCCCCeecC
Confidence 45899999999997654 4699998884
No 4
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}
Probab=38.65 E-value=18 Score=24.18 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCceEEEEEcCC----cceeeEEeccCccCC--CCceEeeCCHHHHHHHHHHh
Q 041106 33 VPKGFLSVYVGEN----QKKRFLVPEFGFNYP--MGASTIPSGQDTFIEVISRL 80 (83)
Q Consensus 33 vpkG~~aVYVG~~----~~~RFvVpEfGf~~~--~G~L~IPC~~~~F~~vl~~l 80 (83)
...|-++|+.|.- .+.||+|.|-..+.. -|....|++.+.|..+...+
T Consensus 36 ~~~GaL~v~TG~~TGRSPkDKfiV~d~~t~d~IwWg~vN~~is~e~F~~L~~~~ 89 (210)
T d1j3ba2 36 AHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEAFEALYQRV 89 (210)
T ss_dssp CTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHHHHHHHHHH
T ss_pred cCCCCEEEecCCccCcCCCccEEEeecccccccccccccccccHHHHHHHHHHH
Confidence 4679999999862 268999997655432 37889999999999887644
No 5
>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.35 E-value=26 Score=21.68 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=23.3
Q ss_pred ccccCCCceEEEEEcCCcceeeEEe--ccCccCCCCceEe
Q 041106 29 TCADVPKGFLSVYVGENQKKRFLVP--EFGFNYPMGASTI 66 (83)
Q Consensus 29 ~~~~vpkG~~aVYVG~~~~~RFvVp--EfGf~~~~G~L~I 66 (83)
.+...+.|+|+||+-...-.||..- -|....+...++|
T Consensus 28 ~~~~~~~g~f~vy~SsksG~R~~~~~g~f~~~~~~~~~~i 67 (143)
T d2nt0a1 28 PPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLL 67 (143)
T ss_dssp CCCCCCTTEEEEEEEETTSCCSEEEEEECBSSCCCCSEEE
T ss_pred CCCcCCCCeEEEEEEcCCcceEEEEEeeeeecCCCCceEE
Confidence 3455778999999954333778666 3444444344444
No 6
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.10 E-value=22 Score=20.64 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=18.3
Q ss_pred CCCCceEeeCCHHHHHHHHHHhh
Q 041106 59 YPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 59 ~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
.+.|.+-|--+...|++|+..+.
T Consensus 37 ~~~~~~FiDRdp~~F~~IL~ylR 59 (105)
T d1nn7a_ 37 PETQQYFFDRDPDIFRHILNFYR 59 (105)
T ss_dssp GGGTEEEECSCTTTHHHHHHHHH
T ss_pred CCCCcEEEeCCHHHHHHHHHHHh
Confidence 33478888889999999998765
No 7
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}
Probab=32.43 E-value=29 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCCceEEEEEcCC----cceeeEEeccCccCC--CCce------EeeCCHHHHHHHHHHh
Q 041106 33 VPKGFLSVYVGEN----QKKRFLVPEFGFNYP--MGAS------TIPSGQDTFIEVISRL 80 (83)
Q Consensus 33 vpkG~~aVYVG~~----~~~RFvVpEfGf~~~--~G~L------~IPC~~~~F~~vl~~l 80 (83)
.-.|-++|+.|+. .+.||.|-|=..+.. -|.+ ..|++++.|..+...+
T Consensus 45 s~~GaL~v~TG~~TGRSPkDKfIV~d~~t~d~IwWG~v~~~~~~N~p~s~e~F~~L~~~~ 104 (222)
T d2olra2 45 TNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLV 104 (222)
T ss_dssp CTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSSSSCCSCEEECHHHHHHHHHHH
T ss_pred cCCCcEEEeCCCCCCCCCCceEEEEecccccceeeccccccccCCccCCHHHHHHHHHHH
Confidence 5678899999873 268999984443321 1444 8999999999887654
No 8
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=31.90 E-value=42 Score=19.13 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=20.2
Q ss_pred ccCCCCceEeeCCHHHHHHHHHHhh
Q 041106 57 FNYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 57 f~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
++.+.|.+-|--+...|.+|+..+.
T Consensus 38 ~~~~~~~~fiDRdp~~F~~IL~ylR 62 (103)
T d3kvta_ 38 YDPVLNEYFFDRHPGVFAQIINYYR 62 (103)
T ss_dssp EETTTTEEEECSCTTTHHHHHHHHH
T ss_pred cCCCCCcEEecCCHHHHHHHHHHHc
Confidence 3444588999999999999998775
No 9
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.19 E-value=18 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.9
Q ss_pred cccCCCceEEEEEcC
Q 041106 30 CADVPKGFLSVYVGE 44 (83)
Q Consensus 30 ~~~vpkG~~aVYVG~ 44 (83)
..+.|+|++-+|||.
T Consensus 4 ~~~~~~g~~~~fvgn 18 (113)
T d1owxa_ 4 SLEEKIGCLLKFSGD 18 (113)
T ss_dssp CCSCCCCCEEEEEES
T ss_pred CcCCCCCCeEEEECC
Confidence 357899999999985
No 10
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=26.49 E-value=54 Score=18.65 Aligned_cols=24 Identities=4% Similarity=-0.010 Sum_probs=19.0
Q ss_pred cCCCCceEeeCCHHHHHHHHHHhh
Q 041106 58 NYPMGASTIPSGQDTFIEVISRLD 81 (83)
Q Consensus 58 ~~~~G~L~IPC~~~~F~~vl~~l~ 81 (83)
+.+.|.+-|--+...|.+|+..+.
T Consensus 38 ~~~~g~~FiDRdp~~F~~IL~flR 61 (100)
T d1t1da_ 38 DPLRNEYFFDRNRPSFDAILYFYQ 61 (100)
T ss_dssp ETTTTEEEECSCSTTHHHHHHHHH
T ss_pred CCCCCeEEEecCHHHHHHHHHHHh
Confidence 334488999999999999998774
No 11
>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}
Probab=26.18 E-value=20 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCceEEEEEcCC----cceeeEEeccCccC--CCCceEeeCCHHHHHHHHHHh
Q 041106 33 VPKGFLSVYVGEN----QKKRFLVPEFGFNY--PMGASTIPSGQDTFIEVISRL 80 (83)
Q Consensus 33 vpkG~~aVYVG~~----~~~RFvVpEfGf~~--~~G~L~IPC~~~~F~~vl~~l 80 (83)
...|-++|+.|+- .+.||.|.|-..+. .-|....|++.+.|..+...+
T Consensus 27 s~~GaL~v~TG~~TGRSPkDKfIV~d~~t~~~i~Wg~~N~~~~~e~F~~L~~~v 80 (199)
T d1ii2a2 27 TARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIA 80 (199)
T ss_dssp CTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHH
T ss_pred cCCCCEEEecCCccCCCCCceEEEccCCccccceeecCCccCCHHHHHHHHHHH
Confidence 3569999999873 26899998554432 126788999999999776543
Done!