BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041107
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D GWTPLH A Y I + LL+ A + +D+ +T LHLAA RG + +V+ ++
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK 101
Query: 77 HCPECCEVVDDRGWNVLHFA 96
+ + D G+ LH A
Sbjct: 102 NGAD-VNANDHNGFTPLHLA 120
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D G TPLH A + + LL+ A + +++ T LHLAA G + +V+ ++
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLK--NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 77 HCPEC 81
H +
Sbjct: 135 HGADV 139
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEI 74
RD GWTPLH A + I + LL K+ A ++ +D +T LHLAA RG + +V+ +
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ + + D G+ LH A
Sbjct: 100 LKNGAD-VNASDSHGFTPLHLA 120
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
+D G TPLH A I + LL+ A + + + T LHLAA RG + +V+ ++
Sbjct: 76 KDSLGVTPLHLAARRGHLEIVEVLLK--NGADVNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Query: 76 DHCPEC 81
+ +
Sbjct: 134 KNGADV 139
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79
G TPLH A + K LLEA A + + + T LHLAA G + +V+ +++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 80 ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLA 134
+ D G LH A + + +K L++ V KD G TP H+ A
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN----AKDKNGRTPLHLAA 109
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
+D++G TPLH A + K LLEA A + + + T LHLAA G + +V+ ++
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 76 DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVD 110
+ + D G LH A + + +K L++
Sbjct: 89 EAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D +G TPLH A + I + LL+ A + + + +T LHLAA G + +V+ ++
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLK--NGADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
Query: 77 HCPECCEVVDDRGWNVLHFAMVS 99
H + D GW LH A +S
Sbjct: 94 HGAD-VNAYDRAGWTPLHLAALS 115
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKM-TALHLAAGRG 66
K + D G TPLH A Y I + LL K A ++ DR T LHLAA G
Sbjct: 60 KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAALSG 116
Query: 67 DVWMVQEIIDHCPEC 81
+ +V+ ++ H +
Sbjct: 117 QLEIVEVLLKHGADV 131
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEI 74
RD GWTPLH A I + LL K A ++ +D +T LHLAA RG + +V+ +
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLL---KYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 75 IDHCPEC 81
+ H +
Sbjct: 133 LKHGADV 139
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 52 EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
+D+ T LHLAA G +V+ ++ H + D GW LH A + + ++ L+ K
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLL-K 101
Query: 112 YPAVRNLIFKKDVKGNTPFHVLA 134
Y A N +D G TP H+ A
Sbjct: 102 YGADVN---AQDAYGLTPLHLAA 121
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKM-TALHLAAGRGDVWMVQEI 74
D G TPLH A ++ I + LL K A ++ D T LHLAA G + +V+ +
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ + + D G LH A
Sbjct: 100 LKYGAD-VNAQDAYGLTPLHLA 120
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
+++G TPLHYA +R I+ LLE A + + TA+H AA +G++ MV I+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGNLKMVH-ILL 159
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+ D G LH A + K LV + + I+ ++ + TP V
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IYIENKEEKTPLQV 211
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
++D GW+PLH A I K LL K A + + T LH AA + +
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 74 IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+++ + D +H A + + H++ Y A N+ +D +GNTP H+
Sbjct: 125 LLEGGAN-PDAKDHYDATAMHRAAAKGNLK-MVHILLFYKASTNI---QDTEGNTPLHL 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D GWTP H A + + K L + L ++ +T LHLA G+ + Q +I+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP-FHVL-- 133
+ + D LH A + ++ L + N +D +G TP FH L
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW---QDKQGWTPLFHALAE 184
Query: 134 -----AAVCRQSYDARYDIVPWKIAKAHFQATNKQ 163
A + + Y A YD+V K AKA A N+Q
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D GWTP H A + + K L + L ++ +T LHLA G+ + Q +I+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP-FHVL-- 133
+ + D LH A + ++ L + N +D +G TP FH L
Sbjct: 129 NGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW---QDKQGWTPLFHALAE 184
Query: 134 -----AAVCRQSYDARYDIVPWKIAKAHFQATNKQ 163
A + + Y A YD+V K AKA A N+Q
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 12/155 (7%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D GWTP H A + + K L + L ++ +T LHLA G+ + Q +I+
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTP-FHVL-- 133
+ + D LH A + ++ L + N +D +G TP FH L
Sbjct: 129 NGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW---QDKQGWTPLFHALAE 184
Query: 134 -----AAVCRQSYDARYDIVPWKIAKAHFQATNKQ 163
A + + Y A YD+V K AKA A N+Q
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEII 75
D G TPLH A L I + LL K A ++ ED +T LHLAA RG + +V+ ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLL---KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 76 DHCPEC 81
H +
Sbjct: 101 KHGADV 106
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDED-RKMTALHLAAGRGDVWMVQEII 75
D G+TPLH A I + LL K+ A ++ D +T LHLAA G + +V+ ++
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 76 DHCPECCEVVDDRGWNVLHFA 96
H + D+ G LH A
Sbjct: 101 KHGAD-VNAYDNDGHTPLHLA 120
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
L LD ++ + D HG++PLH+A R + + L+ +++ D T LHLAA
Sbjct: 23 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 80
Query: 64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD 104
G +VQ+++ + + V++ G LH+A F+ +D
Sbjct: 81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYA--CFWGQD 118
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
L LD ++ + D HG++PLH+A R + + L+ +++ D T LHLAA
Sbjct: 18 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 75
Query: 64 GRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARD 104
G +VQ+++ + + V++ G LH+A F+ +D
Sbjct: 76 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYA--CFWGQD 113
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEIIDHC 78
GWTPLH A Y I + LL K+ A ++ D T LHLAA G + +V+ ++ +
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Query: 79 PECCEVVDDRGWNVLHFA 96
+ DD G LH A
Sbjct: 104 AD-VNAKDDNGITPLHLA 120
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEI 74
+D+ G+TPLH A I + LL K+ A ++ +D+ T LHLAA G + +V E+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV-EV 86
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ D G+ LH A
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLA 108
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEI 74
+D+ G+TPLH A I + LL K+ A ++ +D+ T LHLAA G + +V E+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV-EV 98
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ D G+ LH A
Sbjct: 99 LLKAGADVNAKDKDGYTPLHLA 120
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRK-MTALHLAAGRGDVWMVQEI 74
+D+ G+TPLH A I + LL K+ A ++ +D+ T LHLAA G + +V E+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV-EV 86
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ D G+ LH A
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLA 108
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D G TPLHYA I K L+ K A + + + T LH AA G +V+ +I
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 91
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPF 130
+ D G LH+A + +K L+ K V D G TP
Sbjct: 92 KGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT----SDSDGRTPL 140
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
+D G TPLHYA I K L+ K A + + + T LH AA G +V+ +I
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
++D GW+PLH A R I K LL K A + + T LH AA + +
Sbjct: 68 NDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 125
Query: 74 IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+++ + D +H A + + H++ Y A N+ +D +GNTP H+
Sbjct: 126 LLEGGAN-PDAKDHYEATAMHRAAAKGNLK-MIHILLYYKASTNI---QDTEGNTPLHL 179
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
++D GW+PLH A R I K LL K A + + T LH AA + +
Sbjct: 67 NDKDDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 74 IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+++ + D +H A + + H++ Y A N+ +D +GNTP H+
Sbjct: 125 LLEGGAN-PDAKDHYEATAMHRAAAKGNLK-MIHILLYYKASTNI---QDTEGNTPLHL 178
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDED-RKMTALHLAAGRGDVWMVQEII 75
D+ GWTPLH A Y I + LL K A ++ D + T LHLAA G + +V+ ++
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLL---KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 76 DHCPEC 81
+ +
Sbjct: 134 KYGADV 139
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 52 EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
++ +T LHLAA G + +V+ ++ H + + D G+ LH A ++ + ++ L+ K
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLL-K 101
Query: 112 YPAVRNLIFKKDVKGNTPFHVLA 134
Y A N D+ G+TP H+ A
Sbjct: 102 YGADVNAF---DMTGSTPLHLAA 121
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
D +G+TPLH A I + LL+ AD +A ++ T LHLAA G + +V+ +
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEGHLEIVEVL 132
Query: 75 I 75
+
Sbjct: 133 L 133
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEI 74
++D GW+PLH A R I K LL K A + + T LH AA + + +
Sbjct: 68 DKDDAGWSPLHIAASAGRDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 75 IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
++ + D +H A + + H++ Y A N+ +D +GNTP H+
Sbjct: 126 LEGGAN-PDAKDHYDATAMHRAAAKGNLK-MVHILLFYKASTNI---QDTEGNTPLHL 178
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEII 75
D G+TPLH A Y I + LL K+ A ++ D MT LHLAA G + +V+ ++
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 76 DHCPEC 81
H +
Sbjct: 134 KHGADV 139
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEII 75
D G TPLH A Y I + LL K A + D T LHLAA G + +V+ ++
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLL---KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL 100
Query: 76 DHCPECCEVVDDRGWNVLHFA 96
+ + +D G LH A
Sbjct: 101 KNGAD-VNAMDSDGMTPLHLA 120
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
DR G TPLH A D I + LL+ A + + ++ T LHLAA G + +V+ ++
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLK--HGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 76 DHCPEC 81
H +
Sbjct: 101 KHGADV 106
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEII 75
+D++G TPLH A + K LLEA A + + + T LHLAA G + +V+ ++
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Query: 76 D 76
+
Sbjct: 89 E 89
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC 78
+G TPLH A + K LLEA A + + + T LHLAA G + +V+ +++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 79 PECCEVVDDRGWNVLHFA 96
+ D G LH A
Sbjct: 59 AD-VNAKDKNGRTPLHLA 75
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDED-RKMTALHLAAGRGDVWMVQEI 74
D +G TPLH A + I + LL K+ A ++ D T LHLAA RG + +V+ +
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 75 IDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+ + + D G LH A + + ++ L+ KY A N +D G T F +
Sbjct: 100 LKYGAD-VNADDTIGSTPLHLAADTGHLEIVEVLL-KYGADVN---AQDKFGKTAFDI 152
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEI 74
D GWTPLH A + I + LL K+ A ++ D MT L LAA G + +V+ +
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 75 IDHCPECCEVVDDRGWNVLHFA 96
+ + + D G LH A
Sbjct: 100 LKNGAD-VNANDMEGHTPLHLA 120
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 3 LLLLDKKKS---LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTAL 59
L LL+K+ S +T++ G+TPLH A + +++ LLE D A + +T L
Sbjct: 130 LALLEKEASQACMTKK----GFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPL 183
Query: 60 HLAAGRGDVWMVQEII-----DHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPA 114
H+A ++ +V+ ++ H P G+ LH A + L+ +Y
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAW------NGYTPLHIAAKQNQVEVARSLL-QYGG 236
Query: 115 VRNLIFKKDVKGNTPFHVLA 134
N + V+G TP H+ A
Sbjct: 237 SAN---AESVQGVTPLHLAA 253
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D G TPLHYA I K LL K A + + T LH AA G +V+ ++
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLS--KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
+ D G LH+A + + +K L+ K
Sbjct: 92 KGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72
+D G TPLHYA I K LL K A + + T LH AA G +V+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS--KGADPNAKDSDGRTPLHYAAENGHKEIVK 120
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 50 SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLV 109
+ + RK T LHLAAG V +VQ ++ H + D G LH A S+ ++ L+
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNA-CSYGHYEVTELL 110
Query: 110 DKYPAVRNLIFKKDVKGNTPFHVLAAVCR 138
K+ A N + D+ TP H A+ R
Sbjct: 111 LKHGACVNAM---DLWQFTPLHEAASKNR 136
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 20 GWTPLHYAVYLDRCFISKCLLE--ADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77
G TPLH A I + LL+ AD +A ++ T LHLAA G + +V+ ++ H
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAW----DNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 78 CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
+ D G+ LH A + ++ L+ KY A N +D G T F +
Sbjct: 103 GAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVN---AQDKFGKTAFDI 152
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAA 63
LLL S+ H T LH+AV + LLEA A + + + +AL LA
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAK 218
Query: 64 GRGDVWMVQEI 74
R +VWM+ +
Sbjct: 219 QRKNVWMINHL 229
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLL 40
LL+ ++ + + GWTPLH AV + R I + LL
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 5 LLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLL 40
LL+ ++ + + GWTPLH AV + R I + LL
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 79
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 52 EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
E R+ T LH AAG V +V+ ++ H + D G LH A S+ ++ L+ K
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA-CSYGHYEVAELLVK 100
Query: 112 YPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171
+ AV N+ D+ TP H AA +Y+I K+ H K+N
Sbjct: 101 HGAVVNVA---DLWKFTPLHEAAA------KGKYEIC--KLLLQHGADPTKKNRDGNTPL 149
Query: 172 RYGFPDLEQEIQELSKADGS 191
D + +IQ+L + D +
Sbjct: 150 DL-VKDGDTDIQDLLRGDAA 168
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 52 EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
E R+ T LH AAG V +V+ ++ H + D G LH A S+ ++ L+ K
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA-CSYGHYEVAELLVK 96
Query: 112 YPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171
+ AV N+ D+ TP H AA +Y+I K+ H K+N
Sbjct: 97 HGAVVNVA---DLWKFTPLHEAAA------KGKYEIC--KLLLQHGADPTKKNRDGNTPL 145
Query: 172 RYGFPDLEQEIQELSKADGS 191
D + +IQ+L + D +
Sbjct: 146 DL-VKDGDTDIQDLLRGDAA 164
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 52 EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDK 111
E R+ T LH AAG V +V+ ++ H + D G LH A S+ ++ L+ K
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA-CSYGHYEVAELLVK 98
Query: 112 YPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171
+ AV N+ D+ TP H AA +Y+I K+ H K+N
Sbjct: 99 HGAVVNVA---DLWKFTPLHEAAA------KGKYEIC--KLLLQHGADPTKKNRDGNTPL 147
Query: 172 RYGFPDLEQEIQELSKADGS 191
D + +IQ+L + D +
Sbjct: 148 DL-VKDGDTDIQDLLRGDAA 166
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDR-KMTALHLAAGRGDVWMVQEI 74
D+ G TPLH A D I + LL K+ A ++ D T LHL A G + +V+ +
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 75 IDHCPEC 81
+ H +
Sbjct: 100 LKHGADV 106
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex
Including Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter
Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
+ SL + DR G T LH A R +K LLEA A + + R T LH A
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAA 98
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 56 MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
+T LHLAA G + +V+ ++ H + +D G LH A + + ++ L+ K+ A
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLL-KHGAD 105
Query: 116 RNLIFKKDVKGNTPFHVLA 134
N + D G+TP H+ A
Sbjct: 106 VNAV---DTWGDTPLHLAA 121
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
Length = 253
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
+ SL + DR G T LH A R +K LLEA A + + R T LH A
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGR--TPLHAA 97
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
SL + DR G T LH A R +K LLEA A + + R T LH A
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAA 97
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 56 MTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV 115
+T LHLAA G + +V+ ++ H + +D G LH A + + ++ L+ K+ A
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLL-KHGAD 105
Query: 116 RNLIFKKDVKGNTPFHVLA 134
N + D G+TP H+ A
Sbjct: 106 VNAV---DTWGDTPLHLAA 121
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC--P 79
TPLH AV ++ I++ LL A L + R T LHLA +G + V + C P
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 80 ECCEVVDDRGWN---VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
++ +N LH A + Y ++ LV V ++ G T H+
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN---AQEPCNGRTALHL 154
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
SL + DR G T LH A R +K LLEA A + + R T LH A
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGR--TPLHAA 62
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76
D +G TPLH A + I + LL A + + + T LHLAA G + +V+ ++
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 77 HCPEC 81
+ +
Sbjct: 90 YGADV 94
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDED-RKMTALHLAAGRGDVWMVQEII 75
D +G TPLH A L I + LL K A ++ +D +T L+LAA G + +V+ ++
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLL---KYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 76 DHCPEC 81
H +
Sbjct: 122 KHGADV 127
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 11 SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLA 62
SL + DR G T LH A R +K LLEA A + + R T LH A
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR--TPLHAA 65
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC--P 79
TPLH AV ++ I++ LL A L + R T LHLA +G + V + C P
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 80 ECCEVVDDRGWN---VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHV 132
++ +N LH A + Y ++ LV V ++ G T H+
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN---AQEPCNGRTALHL 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 50 SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLV 109
+++D T LHLAA +G + +V+ ++ H + D G LH A + + ++ L+
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 110 DKYPAVRNLIFKKDVKGNTPFHVLA 134
V D G TP H+ A
Sbjct: 101 KNGADVN----ATDTYGFTPLHLAA 121
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
E D +G TPL YAV+ + K LLE+ + +D L +A G V V E
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
E D +G TPL YAV+ + K LLE+ + +D L +A G V V E
Sbjct: 112 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73
E D +G TPL YAV+ + K LLE+ + +D L +A G V V E
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,749,822
Number of Sequences: 62578
Number of extensions: 362885
Number of successful extensions: 882
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 104
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)