Query 041107
Match_columns 374
No_of_seqs 347 out of 3566
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:58:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 1.5E-31 5E-36 225.7 14.6 157 22-193 6-162 (169)
2 4b93_B Ankyrin repeat domain-c 100.0 1.4E-31 4.6E-36 243.1 10.5 159 4-174 70-228 (269)
3 3hra_A Ankyrin repeat family p 100.0 1.1E-30 3.7E-35 225.9 15.2 174 2-189 21-200 (201)
4 1oy3_D Transcription factor in 100.0 1.4E-30 4.7E-35 236.8 15.4 180 2-195 25-253 (282)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 2.1E-30 7.2E-35 232.8 14.7 179 2-194 39-217 (253)
6 2rfm_A Putative ankyrin repeat 100.0 1E-30 3.5E-35 224.8 11.9 164 10-188 25-188 (192)
7 2rfa_A Transient receptor pote 100.0 1.7E-30 5.8E-35 229.9 13.5 175 2-190 19-220 (232)
8 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-30 3.7E-35 232.0 12.0 178 2-193 24-210 (236)
9 3aji_A 26S proteasome non-ATPa 100.0 9.6E-30 3.3E-34 224.8 17.4 177 2-193 22-198 (231)
10 2f8y_A Notch homolog 1, transl 100.0 5.9E-30 2E-34 224.9 15.5 179 1-193 6-184 (223)
11 2f8y_A Notch homolog 1, transl 100.0 2.1E-29 7.1E-34 221.4 17.8 179 2-195 41-219 (223)
12 4gpm_A Engineered protein OR26 100.0 8.1E-30 2.8E-34 215.0 13.8 146 2-160 20-165 (169)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-29 4.3E-34 227.8 15.0 173 2-189 73-245 (253)
14 2dzn_A Probable 26S proteasome 100.0 2.3E-29 7.9E-34 221.7 16.0 179 2-194 18-202 (228)
15 3aji_A 26S proteasome non-ATPa 100.0 8.2E-30 2.8E-34 225.2 12.9 173 2-190 56-228 (231)
16 1k1a_A B-cell lymphoma 3-encod 100.0 9.9E-29 3.4E-33 219.4 16.9 177 2-193 25-209 (241)
17 3utm_A Tankyrase-1; tankyrase, 100.0 8.1E-29 2.8E-33 231.8 16.8 182 2-194 40-307 (351)
18 2etb_A Transient receptor pote 100.0 9.4E-30 3.2E-34 228.7 9.9 171 8-189 27-243 (256)
19 3b7b_A Euchromatic histone-lys 100.0 2E-28 6.9E-33 217.1 18.3 177 2-193 27-203 (237)
20 3v31_A Ankyrin repeat family A 100.0 6.2E-29 2.1E-33 208.7 14.0 155 19-188 2-156 (167)
21 2xai_A ASB-9, ankyrin repeat a 100.0 1.6E-28 5.4E-33 221.7 16.5 175 2-194 19-193 (261)
22 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.1E-28 3.6E-33 207.9 13.4 160 15-189 9-168 (169)
23 3twr_A Tankyrase-2; ankyrin re 100.0 5.2E-29 1.8E-33 208.8 10.9 161 16-191 4-164 (165)
24 2pnn_A Transient receptor pote 100.0 5.5E-29 1.9E-33 225.9 11.8 178 2-193 29-259 (273)
25 1s70_B 130 kDa myosin-binding 100.0 2E-28 6.8E-33 224.8 15.6 177 2-193 56-258 (299)
26 1sw6_A Regulatory protein SWI6 100.0 3.2E-29 1.1E-33 233.9 10.4 163 4-173 114-325 (327)
27 2dzn_A Probable 26S proteasome 100.0 1.7E-28 5.8E-33 216.2 14.3 160 2-173 52-217 (228)
28 3v30_A DNA-binding protein rfx 100.0 1.1E-28 3.6E-33 208.3 11.7 158 20-188 2-160 (172)
29 4b93_B Ankyrin repeat domain-c 100.0 1E-28 3.5E-33 224.1 12.5 178 2-194 27-212 (269)
30 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-28 4.2E-33 205.6 11.9 158 18-191 3-161 (162)
31 3v30_A DNA-binding protein rfx 100.0 3E-28 1E-32 205.6 14.1 155 2-168 18-172 (172)
32 4hbd_A KN motif and ankyrin re 100.0 1.2E-28 4E-33 224.6 12.4 162 12-188 103-271 (276)
33 1oy3_D Transcription factor in 100.0 2.2E-28 7.7E-33 222.1 14.1 171 13-193 2-218 (282)
34 3b7b_A Euchromatic histone-lys 100.0 6E-28 2.1E-32 214.0 16.1 163 2-177 60-223 (237)
35 1k1a_A B-cell lymphoma 3-encod 100.0 9.7E-29 3.3E-33 219.5 10.7 171 2-188 62-237 (241)
36 3f6q_A Integrin-linked protein 100.0 2.1E-28 7.2E-33 208.0 12.2 165 17-195 2-166 (179)
37 1awc_B Protein (GA binding pro 100.0 2.4E-28 8.1E-33 202.3 12.1 151 20-186 2-152 (153)
38 3jxi_A Vanilloid receptor-rela 100.0 1E-28 3.5E-33 222.3 10.3 169 8-190 30-248 (260)
39 3ljn_A Hypothetical protein; a 100.0 4.3E-28 1.5E-32 229.2 14.9 173 2-190 36-267 (364)
40 3d9h_A CDNA FLJ77766, highly s 100.0 1E-27 3.5E-32 219.3 16.9 174 2-193 75-248 (285)
41 2xai_A ASB-9, ankyrin repeat a 100.0 9.6E-28 3.3E-32 216.5 15.5 168 2-189 52-219 (261)
42 2rfa_A Transient receptor pote 100.0 1.3E-27 4.4E-32 211.4 15.7 164 19-193 2-184 (232)
43 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-27 5.6E-32 230.6 17.2 157 9-177 234-390 (437)
44 1wdy_A 2-5A-dependent ribonucl 99.9 4.7E-27 1.6E-31 213.2 17.3 176 2-192 55-245 (285)
45 4g8k_A 2-5A-dependent ribonucl 99.9 2.6E-27 8.9E-32 221.5 15.9 184 1-193 40-299 (337)
46 3d9h_A CDNA FLJ77766, highly s 99.9 4.5E-27 1.5E-31 215.1 16.5 166 12-193 51-216 (285)
47 3eu9_A Huntingtin-interacting 99.9 2.6E-27 9.1E-32 209.6 14.1 179 2-194 25-204 (240)
48 3kea_A K1L; tropism, ANK repea 99.9 1.7E-27 5.8E-32 217.9 11.7 173 4-193 17-221 (285)
49 1n11_A Ankyrin; clathrin, BAND 99.9 1.1E-26 3.7E-31 224.8 18.0 169 10-193 202-370 (437)
50 2fo1_E LIN-12 protein; beta-ba 99.9 3.3E-27 1.1E-31 224.2 14.1 173 7-194 153-340 (373)
51 2fo1_E LIN-12 protein; beta-ba 99.9 2.5E-27 8.5E-32 225.1 13.2 175 2-191 182-370 (373)
52 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3E-27 1E-31 196.0 12.0 152 20-188 2-154 (156)
53 1bi7_B P16INK4A, MTS1, multipl 99.9 9.1E-28 3.1E-32 199.6 8.8 146 13-171 5-151 (156)
54 1wdy_A 2-5A-dependent ribonucl 99.9 1.6E-26 5.5E-31 209.7 17.3 179 2-193 21-212 (285)
55 3f6q_A Integrin-linked protein 99.9 1.9E-27 6.5E-32 202.1 10.0 151 2-164 21-171 (179)
56 3utm_A Tankyrase-1; tankyrase, 99.9 1.3E-26 4.3E-31 216.9 16.4 169 2-189 74-331 (351)
57 1ikn_D Protein (I-kappa-B-alph 99.9 9.9E-28 3.4E-32 212.9 8.1 170 14-194 2-178 (236)
58 3eu9_A Huntingtin-interacting 99.9 3.9E-26 1.3E-30 202.0 17.9 166 13-192 2-168 (240)
59 3kea_A K1L; tropism, ANK repea 99.9 3.5E-27 1.2E-31 215.8 10.9 142 33-193 13-155 (285)
60 1d9s_A Cyclin-dependent kinase 99.9 3.4E-27 1.2E-31 191.5 9.4 134 10-156 2-136 (136)
61 3ljn_A Hypothetical protein; a 99.9 5E-27 1.7E-31 221.9 11.6 166 10-188 10-194 (364)
62 1s70_B 130 kDa myosin-binding 99.9 3.1E-26 1.1E-30 210.1 16.3 163 17-193 37-225 (299)
63 3hra_A Ankyrin repeat family p 99.9 4.6E-26 1.6E-30 196.7 15.2 166 17-193 2-171 (201)
64 1ycs_B 53BP2, P53BP2; ankyrin 99.9 9.3E-27 3.2E-31 207.4 6.7 142 17-171 2-144 (239)
65 1ihb_A P18-INK4C(INK6), cyclin 99.9 5.5E-26 1.9E-30 189.5 10.9 141 2-156 21-162 (162)
66 2etb_A Transient receptor pote 99.9 1.9E-26 6.4E-31 207.1 8.6 163 19-192 1-206 (256)
67 3v31_A Ankyrin repeat family A 99.9 8.3E-26 2.8E-30 189.5 12.0 136 2-145 19-154 (167)
68 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.8E-25 6.1E-30 188.1 13.8 136 2-145 30-165 (169)
69 3twr_A Tankyrase-2; ankyrin re 99.9 3.1E-26 1.1E-30 191.7 9.1 136 2-145 24-159 (165)
70 1awc_B Protein (GA binding pro 99.9 1.3E-25 4.3E-30 185.8 12.4 133 2-143 18-150 (153)
71 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.1E-25 3.8E-30 186.5 11.7 135 2-145 18-152 (156)
72 2vge_A RELA-associated inhibit 99.9 8.9E-27 3E-31 206.3 4.3 156 3-170 2-162 (229)
73 2pnn_A Transient receptor pote 99.9 2.9E-26 1E-30 207.9 7.4 173 10-192 3-218 (273)
74 2rfm_A Putative ankyrin repeat 99.9 2.2E-25 7.5E-30 191.4 11.5 136 2-145 51-186 (192)
75 3t8k_A Uncharacterized protein 99.9 7.8E-26 2.7E-30 193.7 6.5 155 20-188 6-179 (186)
76 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.6E-25 2.6E-29 174.1 11.0 126 19-156 1-126 (126)
77 4g8k_A 2-5A-dependent ribonucl 99.9 1.6E-24 5.4E-29 202.6 14.8 161 14-193 162-327 (337)
78 2vge_A RELA-associated inhibit 99.9 3E-26 1E-30 202.9 2.8 160 2-177 37-201 (229)
79 2jab_A H10-2-G3; HER2, darpin, 99.9 4.6E-25 1.6E-29 178.8 9.0 124 15-145 9-132 (136)
80 3c5r_A BARD-1, BRCA1-associate 99.9 3.3E-25 1.1E-29 179.8 8.2 122 15-143 5-126 (137)
81 3jxi_A Vanilloid receptor-rela 99.9 8.1E-25 2.8E-29 196.8 10.1 135 12-158 85-252 (260)
82 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4E-25 1.4E-29 196.8 7.7 159 3-175 22-192 (239)
83 3ehr_A Osteoclast-stimulating 99.9 4.8E-25 1.6E-29 193.8 7.1 141 13-165 66-207 (222)
84 4hbd_A KN motif and ankyrin re 99.9 2.6E-24 8.8E-29 195.8 9.8 137 2-145 127-269 (276)
85 3aaa_C Myotrophin, protein V-1 99.9 3.2E-24 1.1E-28 170.6 8.9 114 17-137 4-117 (123)
86 3t8k_A Uncharacterized protein 99.9 3.6E-25 1.2E-29 189.5 3.5 144 3-161 23-184 (186)
87 3deo_A Signal recognition part 99.9 3.3E-24 1.1E-28 182.9 9.4 140 16-188 40-180 (183)
88 1d9s_A Cyclin-dependent kinase 99.9 3.1E-24 1.1E-28 173.9 7.1 133 43-191 2-135 (136)
89 3ui2_A Signal recognition part 99.9 1.1E-23 3.9E-28 188.1 10.0 140 16-188 41-181 (244)
90 1sw6_A Regulatory protein SWI6 99.9 1.3E-23 4.5E-28 195.8 9.1 157 22-193 99-309 (327)
91 3c5r_A BARD-1, BRCA1-associate 99.9 9E-24 3.1E-28 171.2 4.5 126 49-188 5-130 (137)
92 2jab_A H10-2-G3; HER2, darpin, 99.9 1.1E-22 3.8E-27 164.7 9.9 123 54-189 13-135 (136)
93 2b0o_E UPLC1; arfgap, structur 99.9 8.7E-23 3E-27 188.0 9.2 139 20-176 151-298 (301)
94 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.2E-22 1.1E-26 158.8 11.0 125 54-191 1-125 (126)
95 1bi7_B P16INK4A, MTS1, multipl 99.9 1.7E-22 5.9E-27 167.5 7.4 123 2-133 28-151 (156)
96 3aaa_C Myotrophin, protein V-1 99.9 3.6E-22 1.2E-26 158.7 8.9 108 54-171 6-113 (123)
97 2l6b_A NR1C; ankyrin, consensu 99.9 1E-21 3.5E-26 154.0 8.5 109 15-130 4-112 (115)
98 3jue_A Arfgap with coiled-coil 99.9 7.3E-22 2.5E-26 186.3 8.9 148 17-173 196-346 (368)
99 2b0o_E UPLC1; arfgap, structur 99.8 1.9E-21 6.5E-26 179.0 10.1 124 2-139 167-299 (301)
100 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6.1E-21 2.1E-25 143.8 10.6 88 19-109 1-88 (93)
101 3deo_A Signal recognition part 99.8 1.3E-22 4.3E-27 173.0 0.9 134 28-173 8-152 (183)
102 2aja_A Ankyrin repeat family p 99.8 4.4E-23 1.5E-27 195.3 -2.5 154 14-188 86-246 (376)
103 3lvq_E ARF-GAP with SH3 domain 99.8 2.6E-21 8.9E-26 190.4 10.0 136 20-167 132-276 (497)
104 1dcq_A PYK2-associated protein 99.8 5.5E-21 1.9E-25 173.9 8.9 126 20-156 130-263 (278)
105 3ehr_A Osteoclast-stimulating 99.8 1.4E-21 4.9E-26 171.5 4.7 163 16-192 21-198 (222)
106 3ui2_A Signal recognition part 99.8 2.7E-22 9.4E-27 179.1 -2.0 140 18-173 13-153 (244)
107 1dcq_A PYK2-associated protein 99.8 8.5E-20 2.9E-24 166.1 14.0 170 15-197 61-268 (278)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.8E-20 1.3E-24 139.5 7.2 93 54-156 1-93 (93)
109 2l6b_A NR1C; ankyrin, consensu 99.8 1.5E-20 5.2E-25 147.3 4.7 109 49-168 4-112 (115)
110 2aja_A Ankyrin repeat family p 99.8 3.3E-21 1.1E-25 182.4 -2.9 151 2-175 108-265 (376)
111 2zgd_A 3 repeat synthetic anky 99.8 4.5E-19 1.5E-23 138.0 8.9 98 8-108 12-109 (110)
112 3jue_A Arfgap with coiled-coil 99.8 1.3E-18 4.5E-23 164.0 12.4 131 2-137 216-348 (368)
113 3lvq_E ARF-GAP with SH3 domain 99.8 1.2E-18 4E-23 171.5 11.6 121 2-136 148-277 (497)
114 2zgd_A 3 repeat synthetic anky 99.7 2.7E-17 9.4E-22 127.8 6.8 90 48-143 18-107 (110)
115 2iub_A CORA, divalent cation t 58.5 8.3 0.00028 35.3 4.2 53 314-367 305-361 (363)
116 4ev6_A Magnesium transport pro 52.3 8.8 0.0003 34.8 3.2 21 314-334 281-301 (339)
117 2ks1_B Epidermal growth factor 31.2 34 0.0011 20.7 2.3 13 341-353 11-23 (44)
118 2jwa_A Receptor tyrosine-prote 30.6 22 0.00076 21.5 1.4 28 342-369 13-41 (44)
119 3j1z_P YIIP, cation efflux fam 28.4 2.6E+02 0.0089 24.4 8.9 16 277-292 48-63 (306)
120 2k21_A Potassium voltage-gated 24.1 26 0.0009 26.4 1.1 16 356-371 68-83 (138)
121 1gp8_A Protein (scaffolding pr 23.1 56 0.0019 19.0 2.1 17 24-40 17-33 (40)
122 2l2t_A Receptor tyrosine-prote 22.6 46 0.0016 20.1 1.8 8 342-349 11-18 (44)
123 4hkr_A Calcium release-activat 20.1 3.7E+02 0.013 22.1 10.2 22 272-293 59-80 (214)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.5e-31 Score=225.74 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=144.8
Q ss_pred cHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhcc
Q 041107 22 TPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFY 101 (374)
Q Consensus 22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 101 (374)
++|+.||+.|+.++|+.|+++|+++ +.+|. +|+||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+.+|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~-~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDS-DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 4799999999999999999999999 99999 9999999999999999999999999996 8899999999999999999
Q ss_pred HHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHH
Q 041107 102 ARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQE 181 (374)
Q Consensus 102 ~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~ 181 (374)
.+++++|+ +.|+++|.+|.+|+||||+|++.|+.+.++.| ++.|++++.+|.+|+||+++|...+.. +
T Consensus 83 ~~~v~~Ll----~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L-----l~~gad~~~~d~~G~TpL~~A~~~g~~---~ 150 (169)
T 4gpm_A 83 KEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLL-----ISKGADVNTSDSDGRTPLDLAREHGNE---E 150 (169)
T ss_dssp HHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---H
T ss_pred HHHHHHHH----HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHcCCH---H
Confidence 99999999 78999999999999999999999988777766 889999999999999999999888876 8
Q ss_pred HHHHHHhcCCCC
Q 041107 182 IQELSKADGSGQ 193 (374)
Q Consensus 182 i~~~l~~~~~~~ 193 (374)
++++|.+.|+..
T Consensus 151 iv~~Ll~~GA~i 162 (169)
T 4gpm_A 151 VVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHCCCCc
Confidence 899999988764
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=243.12 Aligned_cols=159 Identities=20% Similarity=0.134 Sum_probs=146.0
Q ss_pred HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107 4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE 83 (374)
Q Consensus 4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~ 83 (374)
++|...+.++|.+|.+|+||||+|+..|+.+++++|++.++++ +.++. .|.||+|+|+..++.++++.|++.++++ +
T Consensus 70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n 146 (269)
T 4b93_B 70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNA-DQAVPLHLACQQGHFQVVKCLLDSNAKP-N 146 (269)
T ss_dssp -----CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCC-CCCCccccccccChHHHHHHHHHCCCCC-C
Confidence 3455667889999999999999999999999999999999999 88998 9999999999999999999999999996 8
Q ss_pred cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCC
Q 041107 84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQ 163 (374)
Q Consensus 84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~ 163 (374)
.+|..|+||||+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.++.| ++.|+|++.+|++
T Consensus 147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll----~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L-----l~~Gad~~~~d~~ 217 (269)
T 4b93_B 147 KKDLSGNTPLIYACSGGHHELVALLL----QHGASINASNNKGNTALHEAVIEKHVFVVELL-----LLHGASVQVLNKR 217 (269)
T ss_dssp CCCTTCCCHHHHHHHTTCGGGHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HHTTCCSCCCCTT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHH----HCCCCCCccccCCCcHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCC
Confidence 89999999999999999999999999 78999999999999999999999998777766 7899999999999
Q ss_pred CCChHHHHHhC
Q 041107 164 NISAEHIYRYG 174 (374)
Q Consensus 164 g~t~l~~a~~~ 174 (374)
|+||+|+|.+.
T Consensus 218 G~TpL~~A~~~ 228 (269)
T 4b93_B 218 QRTAVDCAEQN 228 (269)
T ss_dssp SCCSGGGSCTT
T ss_pred CCCHHHHHHhC
Confidence 99999999653
No 3
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=1.1e-30 Score=225.93 Aligned_cols=174 Identities=17% Similarity=0.065 Sum_probs=156.2
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++++|...+..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++..
T Consensus 21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 98 (201)
T 3hra_A 21 VKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPD 98 (201)
T ss_dssp HHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhccCcc
Confidence 567888888899999999999999999999999999999999999 88998 9999999999999999999999766644
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhcc-----ccccceeeecccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCR-----QSYDARYDIVPWKIAKA 155 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~-----~~~~~~l~L~~~l~~g~ 155 (374)
.+..|..|+||||+|+.+++.+++++|+ +.+ .+++.+|.+|+||||+|+..++ .+.++.| ++.|+
T Consensus 99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L-----l~~ga 169 (201)
T 3hra_A 99 LNKHNRYGGNALIPAAEKGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL-----MENGA 169 (201)
T ss_dssp TTCCCTTSCCSHHHHHHTTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH-----HHTTC
T ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH-----HHCCC
Confidence 5889999999999999999999999999 666 7999999999999999999876 4455554 88999
Q ss_pred ccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
+++.+|.+|+||+++|...+.. +++++|.+.
T Consensus 170 ~~~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~ 200 (201)
T 3hra_A 170 DQSIKDNSGRTAMDYANQKGYT---EISKILAQY 200 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCH---HHHHHHHTC
T ss_pred CCCccCCCCCCHHHHHHHcCCH---hHHHHHHhc
Confidence 9999999999999999887776 677776654
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.4e-30 Score=236.77 Aligned_cols=180 Identities=21% Similarity=0.129 Sum_probs=159.7
Q ss_pred hHHHHhhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107 2 PLLLLDKKKS--LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79 (374)
Q Consensus 2 ~~~lL~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 79 (374)
++.|++.... .++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++
T Consensus 25 v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~ 102 (282)
T 1oy3_D 25 LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAER-GGHTALHLACRVRAHTCACVLLQPRP 102 (282)
T ss_dssp HHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCT-TSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred HHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCcchhHhhhccCC
Confidence 5667765443 48899999999999999999999999999999999 89999 99999999999999999999999876
Q ss_pred Cc----------------------------------------------cccccCCCCcHHHHHHHhccHHHHHhHHhhcc
Q 041107 80 EC----------------------------------------------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYP 113 (374)
Q Consensus 80 ~~----------------------------------------------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~ 113 (374)
+. .+..|..|+||||+|+.+|+.+++++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll---- 178 (282)
T 1oy3_D 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR---- 178 (282)
T ss_dssp SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH----
T ss_pred CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH----
Confidence 51 3566889999999999999999999999
Q ss_pred cchhhhcccCCC-CCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107 114 AVRNLIFKKDVK-GNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSG 192 (374)
Q Consensus 114 ~~~~~~n~~d~~-G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~ 192 (374)
+.|.+++.+|.. |+||||+|++.|+.+.++.| ++.|++++.+|..|+||+|+|...+.. +++++|.+.|+.
T Consensus 179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELL-----LKAGADPTARMYGGRTPLGSALLRPNP---ILARLLRAHGAP 250 (282)
T ss_dssp HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHTSSCH---HHHHHHHHTTCC
T ss_pred HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHH-----HHcCCCCcccccCCCCHHHHHHHcCCc---HHHHHHHHcCCC
Confidence 788999999865 99999999999987777766 788999999999999999999888776 889999998887
Q ss_pred CCC
Q 041107 193 QYP 195 (374)
Q Consensus 193 ~~~ 195 (374)
...
T Consensus 251 ~~~ 253 (282)
T 1oy3_D 251 EPE 253 (282)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=2.1e-30 Score=232.84 Aligned_cols=179 Identities=21% Similarity=0.107 Sum_probs=152.9
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++.++...+..|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++..
T Consensus 39 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~ 116 (253)
T 1yyh_A 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRATD 116 (253)
T ss_dssp -------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSC
T ss_pred HHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 566777777766778999999999999999999999999999999 88998 9999999999999999999999999855
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
.+..|..|+||||+|+..++.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|
T Consensus 117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~ 187 (253)
T 1yyh_A 117 LDARMHDGTTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQN 187 (253)
T ss_dssp TTCCCTTCCCHHHHHHHHTCSSHHHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred ccccCCCCCcHHHHHHHcChHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcC
Confidence 5888999999999999999999999998 78899999999999999999999987777666 78999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
..|+||+|+|...+.. +++++|.+.++...
T Consensus 188 ~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~ 217 (253)
T 1yyh_A 188 NREETPLFLAAREGSY---ETAKVLLDHFANRD 217 (253)
T ss_dssp TTSCCHHHHHHHHTCH---HHHHHHHHTTCCTT
T ss_pred CCCCCHHHHHHHCCCH---HHHHHHHHcCCCcc
Confidence 9999999999887776 78888888776543
No 6
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1e-30 Score=224.83 Aligned_cols=164 Identities=19% Similarity=0.137 Sum_probs=150.5
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107 10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG 89 (374)
Q Consensus 10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 89 (374)
+.++|.+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 101 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSG 101 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTS
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccc-cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCC
Confidence 3457889999999999999999999999999999998 88998 9999999999999999999999999996 8889999
Q ss_pred CcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHH
Q 041107 90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEH 169 (374)
Q Consensus 90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~ 169 (374)
+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|..|+||++
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~ 172 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLL----EHGANVNDRNLEGETPLIVASKYGRSEIVKKL-----LELGADISARDLTGLTAEA 172 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCBCTTSCBHHH
T ss_pred CcHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHH
Confidence 99999999999999999998 77899999999999999999999987777666 7889999999999999999
Q ss_pred HHHhCCCccHHHHHHHHHh
Q 041107 170 IYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 170 ~a~~~~~~~~~~i~~~l~~ 188 (374)
+|...+.. +++++|.+
T Consensus 173 ~A~~~~~~---~~v~~Ll~ 188 (192)
T 2rfm_A 173 SARIFGRQ---EVIKIFTE 188 (192)
T ss_dssp HHHHTTCH---HHHHHHHH
T ss_pred HHHHhCcH---HHHHHHHh
Confidence 99887776 56665554
No 7
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.7e-30 Score=229.91 Aligned_cols=175 Identities=19% Similarity=0.104 Sum_probs=150.9
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc----ccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA----LISDEDRKMTALHLAAGRGDVWMVQEIIDH 77 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 77 (374)
++.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++++++. +.+|. .|+||||+|+..|+.+++++|+++
T Consensus 19 v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 19 LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-EGQTALHIAVINQNVNLVRALLAR 97 (232)
T ss_dssp HHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT-TTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC-CCcCHHHHHHHcCCHHHHHHHHhC
Confidence 5677887789999999999999999999999999999999988763 34566 899999999999999999999999
Q ss_pred CCCccccccC-------------CCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccc--
Q 041107 78 CPECCEVVDD-------------RGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYD-- 142 (374)
Q Consensus 78 ~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~-- 142 (374)
++++ +..+. .|+||||+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.+
T Consensus 98 g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~ 172 (232)
T 2rfa_A 98 GASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQ 172 (232)
T ss_dssp TCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHH
T ss_pred CCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHH
Confidence 9986 44443 7999999999999999999998 77899999999999999999999886655
Q ss_pred --ceeeecccccccccc------ccccCCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107 143 --ARYDIVPWKIAKAHF------QATNKQNISAEHIYRYGFPDLEQEIQELSKADG 190 (374)
Q Consensus 143 --~~l~L~~~l~~g~~~------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~ 190 (374)
+.| ++.|++. +..|.+|+||+++|...+.. +++++|.+.+
T Consensus 173 i~~~L-----l~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~---~~v~~Ll~~g 220 (232)
T 2rfa_A 173 MYNLL-----LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI---VMFQHLMQKR 220 (232)
T ss_dssp HHHHH-----HHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH---HHHHHHHHHH
T ss_pred HHHHH-----HhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH---HHHHHHHhcC
Confidence 444 7888887 68999999999999877766 6666666543
No 8
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.1e-30 Score=232.05 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=158.0
Q ss_pred hHHHHhhCC---ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107 2 PLLLLDKKK---SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC 78 (374)
Q Consensus 2 ~~~lL~~~~---~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 78 (374)
++.|++..+ .+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.+
T Consensus 24 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~ 101 (236)
T 1ikn_D 24 TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDF-RGNTPLHLACEQGCLASVGVLTQSC 101 (236)
T ss_dssp SSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCT-TCCCHHHHHHHHTCHHHHHHHHHST
T ss_pred HHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 344555443 368999999999999999999999999999999999 89999 9999999999999999999999998
Q ss_pred CC-----ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCC-CCCcHHHHHHhhccccccceeeeccccc
Q 041107 79 PE-----CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV-KGNTPFHVLAAVCRQSYDARYDIVPWKI 152 (374)
Q Consensus 79 ~~-----~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~~~~l~L~~~l~ 152 (374)
++ .....|..|+||||+|+.+++.+++++|+ +.|.+++.+|. +|+||||+|+..|+...++.| ++
T Consensus 102 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~ 172 (236)
T 1ikn_D 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV----SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL-----LK 172 (236)
T ss_dssp TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HT
T ss_pred cchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HH
Confidence 64 24677889999999999999999999999 78999999998 999999999999987777766 78
Q ss_pred cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 153 AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 153 ~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
.|++++..|..|+||+++|...+.. +++++|.+.|+..
T Consensus 173 ~ga~~~~~~~~g~tpl~~A~~~~~~---~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 173 CGADVNRVTYQGYSPYQLTWGRPST---RIQQQLGQLTLEN 210 (236)
T ss_dssp TTCCSCCCCTTCCCGGGGCTTSSCH---HHHHHHHTTSCGG
T ss_pred cCCCCCcccCCCCCHHHHHHccCch---HHHHHHHHcchhh
Confidence 8999999999999999999887776 8889999887754
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=9.6e-30 Score=224.77 Aligned_cols=177 Identities=20% Similarity=0.126 Sum_probs=164.1
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
+++++...+...+.+|.+|+||||+|+..|+.+++++|+++|.++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 22 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 99 (231)
T 3aji_A 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHV 99 (231)
T ss_dssp HHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCC-CCCCHHHHHHHcCHHHHHHHHHHcCCCC
Confidence 577888989999999999999999999999999999999999998 88998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+.+|..|+||||+|+..++.+++++|+ +.+.+++.+|..|+||||+|+..|+.+.++.| ++.|++++.+|
T Consensus 100 -~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~ 169 (231)
T 3aji_A 100 -NAVNQNGCTPLHYAASKNRHEIAVMLL----EGGANPDAKDHYDATAMHRAAAKGNLKMVHIL-----LFYKASTNIQD 169 (231)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHTTCCSCCCC
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HhcCCCccccC
Confidence 888999999999999999999999998 77889999999999999999999987777766 78999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
.+|+||+|+|...+.. +++++|.+.|+..
T Consensus 170 ~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~ 198 (231)
T 3aji_A 170 TEGNTPLHLACDEERV---EEAKFLVTQGASI 198 (231)
T ss_dssp TTSCCHHHHHHHTTCH---HHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHCCCH---HHHHHHHHCCCCC
Confidence 9999999999887776 7888888877654
No 10
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=5.9e-30 Score=224.93 Aligned_cols=179 Identities=22% Similarity=0.119 Sum_probs=159.4
Q ss_pred ChHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107 1 VPLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE 80 (374)
Q Consensus 1 i~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 80 (374)
+++.|++.+.+..+..|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++.
T Consensus 6 ~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN-MGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp CEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred HHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3456777776666667899999999999999999999999999998 88898 999999999999999999999999985
Q ss_pred ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107 81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT 160 (374)
Q Consensus 81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~ 160 (374)
..+..|..|+||||+|+..++.+++++|+ +.+.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++..
T Consensus 84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~ 154 (223)
T 2f8y_A 84 DLDARMHDGTTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-----LKNGANKDMQ 154 (223)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HHTTCCTTCC
T ss_pred CcccCCCCCCcHHHHHHHhCcHHHHHHHH----HcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCCCc
Confidence 56888999999999999999999999998 77889999999999999999999987777666 7889999999
Q ss_pred cCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 161 NKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 161 n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
|..|.||+|+|...+.. +++++|.+.++..
T Consensus 155 ~~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~ 184 (223)
T 2f8y_A 155 NNREETPLFLAAREGSY---ETAKVLLDHFANR 184 (223)
T ss_dssp CTTCCCHHHHHHHHTCH---HHHHHHHHTTCCT
T ss_pred CCCCcCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence 99999999999887776 7888888876654
No 11
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.1e-29 Score=221.42 Aligned_cols=179 Identities=20% Similarity=0.133 Sum_probs=162.1
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|..|+||||+|+..|+.+++++|+++++...+.++. .|+||||+|+..|+.+++++|++.++++
T Consensus 41 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 118 (223)
T 2f8y_A 41 AKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADV 118 (223)
T ss_dssp HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCCcHHHHHHHhCcHHHHHHHHHcCCCC
Confidence 4555554 6778999999999999999999999999999998844488888 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|++.|+.+.++.| ++.|++++..|
T Consensus 119 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~ 188 (223)
T 2f8y_A 119 -NAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITD 188 (223)
T ss_dssp -TCBCTTSCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred -cCcCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH-----HHcCCCCcccc
Confidence 888999999999999999999999999 77899999999999999999999987777666 88999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQYP 195 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~~ 195 (374)
..|.||+++|...+.. +++++|.+.++..++
T Consensus 189 ~~g~t~l~~A~~~~~~---~i~~~L~~~g~~~~~ 219 (223)
T 2f8y_A 189 HMDRLPRDIAQERMHH---DIVRLLDEYNLVRSP 219 (223)
T ss_dssp TTCCCHHHHHHHTTCH---HHHHHHHHTTCSSCC
T ss_pred ccCCCHHHHHHHhcch---HHHHHHHHcCCCccc
Confidence 9999999999888876 889999998876654
No 12
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=8.1e-30 Score=215.05 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=130.1
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.||+ .+.++|.+|.+|+||||+|+..|+.++++.|+++|+++ +.+|. +|+||||+|+..|+.+++++|+++|+++
T Consensus 20 v~~Ll~-~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gadv 96 (169)
T 4gpm_A 20 VKDLIE-NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDS-DGRTPLHHAAENGHKEVVKLLISKGADV 96 (169)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhcc-CCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 556665 46789999999999999999999999999999999999 99999 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT 160 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~ 160 (374)
+.+|.+|+||||+|+.+|+.+++++|+ +.|++++.+|.+|+||||+|++.|+.++++.| ++.|++++..
T Consensus 97 -n~~d~~G~TpLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~L-----l~~GA~ie~~ 165 (169)
T 4gpm_A 97 -NAKDSDGRTPLHHAAENGHKEVVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEVVKLL-----EKQGGWLEHH 165 (169)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HTC-------
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCcCCC
Confidence 889999999999999999999999999 78999999999999999999999987777665 8999988643
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=1.3e-29 Score=227.79 Aligned_cols=173 Identities=20% Similarity=0.142 Sum_probs=156.5
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++.+|..|+||||+|+..|+.+++++|+++++...+.++. .|+||||+|+..|+.+++++|++.++++
T Consensus 73 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 150 (253)
T 1yyh_A 73 AKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHADV 150 (253)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence 445555 56789999999999999999999999999999998843388998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+.+++.+++++|+ +.|+++|.+|.+|+||||+|++.|+.+.++.| ++.|++++.+|
T Consensus 151 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~d 220 (253)
T 1yyh_A 151 -NAVDDLGKSALHWAAAVNNVDAAVVLL----KNGANKDMQNNREETPLFLAAREGSYETAKVL-----LDHFANRDITD 220 (253)
T ss_dssp -TCBCTTSCBHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH-----HHcCCCccccc
Confidence 888999999999999999999999999 78999999999999999999999987777665 89999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
..|+||+++|...++. ++.+++...
T Consensus 221 ~~g~tpl~~A~~~g~~---~i~~~l~~~ 245 (253)
T 1yyh_A 221 HMDRLPRDIAQERMHH---DIVRLLDLE 245 (253)
T ss_dssp TTCCCHHHHHHHTTCH---HHHHHHHC-
T ss_pred cCCCCHHHHHHHcCCH---HHHHHHHHH
Confidence 9999999999988887 777777763
No 14
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=2.3e-29 Score=221.74 Aligned_cols=179 Identities=21% Similarity=0.191 Sum_probs=159.0
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC-
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD--KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC- 78 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~- 78 (374)
++.|++.++...+.+|.+|+||||+|+..|+.+++++|++++ .++....+. .|+||||+|+..|+.+++++|++++
T Consensus 18 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~ 96 (228)
T 2dzn_A 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD-SGWTPFHIACSVGNLEVVKSLYDRPL 96 (228)
T ss_dssp HHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT-TSCCHHHHHHHHCCHHHHHHHHSSSS
T ss_pred HHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 578889988888889999999999999999999999999998 555222777 9999999999999999999999998
Q ss_pred -CCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc-cc
Q 041107 79 -PECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AH 156 (374)
Q Consensus 79 -~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g-~~ 156 (374)
+++ +..|..|+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.| ++.| ++
T Consensus 97 ~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~ 166 (228)
T 2dzn_A 97 KPDL-NKITNQGVTCLHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQIPLHRAASVGSLKLIELL-----CGLGKSA 166 (228)
T ss_dssp CCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HTTTCCC
T ss_pred Cccc-ccCCcCCCCHHHHHHHcCCHhHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HhcCccc
Confidence 664 788999999999999999999999999 77899999999999999999999987777766 7778 99
Q ss_pred cccccCCCCChHHHHHhCCCccHHHHHHHHH-hcCCCCC
Q 041107 157 FQATNKQNISAEHIYRYGFPDLEQEIQELSK-ADGSGQY 194 (374)
Q Consensus 157 ~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~-~~~~~~~ 194 (374)
++..|.+|+||+|+|...+.. +++++|. +.|+...
T Consensus 167 ~~~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~~ga~~~ 202 (228)
T 2dzn_A 167 VNWQDKQGWTPLFHALAEGHG---DAAVLLVEKYGAEYD 202 (228)
T ss_dssp SCCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHCCCSC
T ss_pred ccCcCCCCCCHHHHHHHcCCH---HHHHHHHHhcCCCCC
Confidence 999999999999999888776 7777777 6666543
No 15
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=8.2e-30 Score=225.21 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=155.3
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|..|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus 56 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 132 (231)
T 3aji_A 56 VEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP 132 (231)
T ss_dssp HHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4455554 6779999999999999999999999999999999999 88998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+..++.+++++|+ +.+.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|
T Consensus 133 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~ 202 (231)
T 3aji_A 133 -DAKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKFL-----VTQGASIYIEN 202 (231)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSCCCC
T ss_pred -CCcCCCCCcHHHHHHHcCCHHHHHHHH----hcCCCccccCCCCCCHHHHHHHCCCHHHHHHH-----HHCCCCCCCCC
Confidence 888999999999999999999999998 78899999999999999999999987777665 78999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADG 190 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~ 190 (374)
.+|+||+++|..++.. ++.+++.+.+
T Consensus 203 ~~g~t~l~~A~~~~~~---~i~~lL~~~~ 228 (231)
T 3aji_A 203 KEEKTPLQVAKGGLGL---ILKRLAEGEE 228 (231)
T ss_dssp TTSCCHHHHSCHHHHH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHhhHHH---HHHHHHcccc
Confidence 9999999999766554 6666666543
No 16
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=9.9e-29 Score=219.40 Aligned_cols=177 Identities=19% Similarity=0.104 Sum_probs=159.2
Q ss_pred hHHHHh---hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC
Q 041107 2 PLLLLD---KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC 78 (374)
Q Consensus 2 ~~~lL~---~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 78 (374)
++.|++ ..+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++.|++.+
T Consensus 25 v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 25 VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDR-HGQTAAHLACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 445555 578889999999999999999999999999999999998 88898 9999999999999999999999999
Q ss_pred C----CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeecccccc
Q 041107 79 P----ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIA 153 (374)
Q Consensus 79 ~----~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~ 153 (374)
+ + .+..|..|+||||+|+..++.+++++|+ +.|.+++.+| ..|+||||+|++.|+.+.++.| ++.
T Consensus 103 ~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ 172 (241)
T 1k1a_A 103 APGTLD-LEARNYDGLTALHVAVNTECQETVQLLL----ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL-----LQH 172 (241)
T ss_dssp CTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH-----HHT
T ss_pred CCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHH----HcCCCcccccccCCCcHHHHHHHcCCHHHHHHH-----HHc
Confidence 7 4 3778899999999999999999999998 7788999999 8999999999999987777666 788
Q ss_pred ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 154 KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 154 g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
|++++..|.+|.||+|+|...+.. +++++|.+.|+..
T Consensus 173 g~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~ga~~ 209 (241)
T 1k1a_A 173 GANVNAQMYSGSSALHSASGRGLL---PLVRTLVRSGADS 209 (241)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCH---HHHHHHHHTTCCT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCC
Confidence 999999999999999999887776 7888888877654
No 17
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=8.1e-29 Score=231.85 Aligned_cols=182 Identities=20% Similarity=0.120 Sum_probs=146.4
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++++|...+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 40 v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~ 117 (351)
T 3utm_A 40 LMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVTELLLKHGACV 117 (351)
T ss_dssp HHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 466777778888888888999999999999999999999988888 88888 8899999999999999999999988886
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhc-------------------------------------------------
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKY------------------------------------------------- 112 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~------------------------------------------------- 112 (374)
+..|..|+||||+|+.+++.+++++|++..
T Consensus 118 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (351)
T 3utm_A 118 -NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196 (351)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence 777888888888888888888888887531
Q ss_pred -------------------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccc
Q 041107 113 -------------------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKA 155 (374)
Q Consensus 113 -------------------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~ 155 (374)
.+.|.++|.+|.+|+||||+|++.|+.+.++.| ++.|+
T Consensus 197 ~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~ga 271 (351)
T 3utm_A 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL-----HKHGA 271 (351)
T ss_dssp HTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTC
T ss_pred HHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHCCC
Confidence 123445677788888888888888876666655 77888
Q ss_pred ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 156 HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 156 ~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
+++.+|..|+||+|+|...++. +++++|.+.|+...
T Consensus 272 ~~n~~d~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~~ 307 (351)
T 3utm_A 272 KMNALDSLGQTALHRAALAGHL---QTCRLLLSYGSDPS 307 (351)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCH---HHHHHHHHTTCCTT
T ss_pred CCCCcCCCCCCHHHHHHHcCcH---HHHHHHHHcCCCCC
Confidence 8888888888888888776665 77777777766543
No 18
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=9.4e-30 Score=228.75 Aligned_cols=171 Identities=17% Similarity=0.058 Sum_probs=144.4
Q ss_pred hCCccccc----cCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccc----------cccCCCCchHHHHHHHcCCHHH
Q 041107 8 KKKSLTRE----RDRHGWTPLHYAVYL---DRCFISKCLLEADKSAAL----------ISDEDRKMTALHLAAGRGDVWM 70 (374)
Q Consensus 8 ~~~~~~~~----~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~----------~~d~~~g~tpLh~Aa~~g~~~~ 70 (374)
..+..++. +|.+|+||||+|+.. |+.+++++|+++|++... .+|. .|+||||+|+..|+.++
T Consensus 27 ~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~ 105 (256)
T 2etb_A 27 WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY-QGHSALHIAIEKRSLQC 105 (256)
T ss_dssp HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT-TTCCHHHHHHHTTCHHH
T ss_pred HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc-cCCCHHHHHHHcCCHHH
Confidence 45677887 899999999999999 999999999998877621 1235 79999999999999999
Q ss_pred HHHHHHhCCCccccccCC-------------CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHh--
Q 041107 71 VQEIIDHCPECCEVVDDR-------------GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAA-- 135 (374)
Q Consensus 71 v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~-- 135 (374)
+++|+++|+++ +..|.. |+||||+|+.+|+.+++++|++.. ..|+++|.+|.+|+||||+|+.
T Consensus 106 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~ga~~n~~d~~g~TpLh~A~~~~ 183 (256)
T 2etb_A 106 VKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP-HQPASLEATDSLGNTVLHALVMIA 183 (256)
T ss_dssp HHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS-SCCCCTTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc-ccCCCcCccCCCCCCHHHHHHHcc
Confidence 99999999996 667765 999999999999999999999210 1889999999999999999999
Q ss_pred hcccc-------ccceeeecccccccccc-------ccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 136 VCRQS-------YDARYDIVPWKIAKAHF-------QATNKQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 136 ~g~~~-------~~~~l~L~~~l~~g~~~-------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
.++.+ +++.| ++.|+++ +.+|.+|+||+|+|...+.. +++++|.+.
T Consensus 184 ~~~~~~~~~~~~iv~~L-----l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~ 243 (256)
T 2etb_A 184 DNSPENSALVIHMYDGL-----LQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI---EIFRHILQR 243 (256)
T ss_dssp CSCHHHHHHHHHHHHHH-----HHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHH-----HHcCCCcccccccccccCCCCCCHHHHHHHhCCH---HHHHHHHhC
Confidence 44433 44444 8899999 99999999999999887776 666666553
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=2e-28 Score=217.13 Aligned_cols=177 Identities=22% Similarity=0.123 Sum_probs=156.6
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++..|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|++.++..
T Consensus 27 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 103 (237)
T 3b7b_A 27 CHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMD 103 (237)
T ss_dssp HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred HHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 344554 46778899999999999999999999999999999998 88888 9999999999999999999999999555
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
.+..|..|+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++..|
T Consensus 104 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L-----l~~g~~~~~~~ 174 (237)
T 3b7b_A 104 VNCQDDGGWTPMIWATEYKHVDLVKLLL----SKGSDINIRDNEENICLHWAAFSGCVDIAEIL-----LAAKCDLHAVN 174 (237)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH-----HTTTCCTTCCC
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH-----HHcCCCCCCcC
Confidence 5888999999999999999999999998 77889999999999999999999987777666 78899999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
..|.||+|+|...+.. ++++++.+.++..
T Consensus 175 ~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 175 IHGDSPLHIAARENRY---DCVVLFLSRDSDV 203 (237)
T ss_dssp TTCCCHHHHHHHTTCH---HHHHHHHTTTCCT
T ss_pred CCCCCHHHHHHHhCCH---hHHHHHHHcCCCC
Confidence 9999999999887776 7888888876654
No 20
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=6.2e-29 Score=208.72 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=141.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107 19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV 98 (374)
Q Consensus 19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 98 (374)
.|.||||.|+..|+.++++.|++.+.++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 6899999999999999999999999888 89999 9999999999999999999999999986 8889999999999999
Q ss_pred hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCcc
Q 041107 99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDL 178 (374)
Q Consensus 99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~ 178 (374)
+++.+++++|+ +.+.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++..|.+|+||+++|...+..
T Consensus 79 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~g~t~l~~A~~~~~~- 148 (167)
T 3v31_A 79 KGYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML-----LESGADPTIETDSGYNSMDLAVALGYR- 148 (167)
T ss_dssp HTCHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHHTCH-
T ss_pred cCCHHHHHHHH----HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHHHHcCcH-
Confidence 99999999999 77899999999999999999999987777666 789999999999999999999877665
Q ss_pred HHHHHHHHHh
Q 041107 179 EQEIQELSKA 188 (374)
Q Consensus 179 ~~~i~~~l~~ 188 (374)
++.+++.+
T Consensus 149 --~~~~~L~~ 156 (167)
T 3v31_A 149 --SVQQVIES 156 (167)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 44444443
No 21
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=221.69 Aligned_cols=175 Identities=17% Similarity=0.022 Sum_probs=155.9
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++.
T Consensus 19 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 95 (261)
T 2xai_A 19 LRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASV 95 (261)
T ss_dssp HHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4555554 6779999999999999999999999999999999999 89999 9999999999999999999999999986
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+ .+.+|+||||+|+.+|+.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++. |
T Consensus 96 -~-~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~-~ 163 (261)
T 2xai_A 96 -Q-PESDLASPIHEAARRGHVECVNSLI----AYGGNIDHKISHLGTPLYLACENQQRACVKKL-----LESGADVNQ-G 163 (261)
T ss_dssp -S-CSCTTCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH-----HHHTCCTTC-C
T ss_pred -C-CCCCCCCHHHHHHHcCcHHHHHHHH----HcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH-----HHcCCCCCC-C
Confidence 3 4567999999999999999999998 77899999999999999999999987777666 788999995 8
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
..|.||+|+|...+.. ++++++.+.|+...
T Consensus 164 ~~g~t~Lh~A~~~~~~---~~v~~Ll~~gad~~ 193 (261)
T 2xai_A 164 KGQDSPLHAVARTASE---ELACLLMDFGADTQ 193 (261)
T ss_dssp BTTBCHHHHHHHHTCH---HHHHHHHHTTCCTT
T ss_pred CCCCChHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence 9999999999887776 78888888777643
No 22
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.1e-28 Score=207.94 Aligned_cols=160 Identities=19% Similarity=0.137 Sum_probs=144.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH 94 (374)
Q Consensus 15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 94 (374)
.....+.||||.|++.|+.+++++|+++|.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 85 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLR 85 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHH
Confidence 34567889999999999999999999999998 88998 9999999999999999999999999986 888999999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG 174 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~ 174 (374)
+|+.+++.+++++|+ +.|.+++.+|.+|+||||+|++.|+.+.++.| ++.|++++.+|..|.||+++|...
T Consensus 86 ~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~g~t~l~~A~~~ 156 (169)
T 2y1l_E 86 LAALFGHLEIVEVLL----KNGADVNANDMEGHTPLHLAAMFGHLEIVEVL-----LKNGADVNAQDKFGKTAFDISIDN 156 (169)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHHHHh
Confidence 999999999999999 78899999999999999999999987777666 789999999999999999999887
Q ss_pred CCccHHHHHHHHHhc
Q 041107 175 FPDLEQEIQELSKAD 189 (374)
Q Consensus 175 ~~~~~~~i~~~l~~~ 189 (374)
+.. +++++|.+.
T Consensus 157 ~~~---~~~~~L~~~ 168 (169)
T 2y1l_E 157 GNE---DLAEILQKL 168 (169)
T ss_dssp TCH---HHHHHHHTC
T ss_pred CCH---HHHHHHHHc
Confidence 776 677777653
No 23
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=5.2e-29 Score=208.76 Aligned_cols=161 Identities=20% Similarity=0.125 Sum_probs=142.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 041107 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHF 95 (374)
Q Consensus 16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 95 (374)
.|.+|.||||.|++.|+.++++.|++.+....+..+. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence 4678999999999999999999999965544477787 8999999999999999999999999996 8899999999999
Q ss_pred HHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCC
Q 041107 96 AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGF 175 (374)
Q Consensus 96 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~ 175 (374)
|+.+++.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|.+|+||+++|.. +
T Consensus 82 A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~a~~-~ 151 (165)
T 3twr_A 82 ACSYGHYEVAELLV----KHGAVVNVADLWKFTPLHEAAAKGKYEICKLL-----LQHGADPTKKNRDGNTPLDLVKD-G 151 (165)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCTGGGSCT-T
T ss_pred HHHcCcHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCcccCCCCCChhHhHhc-C
Confidence 99999999999999 78999999999999999999999987777666 78899999999999999999876 3
Q ss_pred CccHHHHHHHHHhcCC
Q 041107 176 PDLEQEIQELSKADGS 191 (374)
Q Consensus 176 ~~~~~~i~~~l~~~~~ 191 (374)
.. ++.++|.+.++
T Consensus 152 ~~---~i~~~L~~~gA 164 (165)
T 3twr_A 152 DT---DIQDLLRGDAA 164 (165)
T ss_dssp CH---HHHHHHHTC--
T ss_pred Ch---HHHHHHhhccc
Confidence 33 77787777554
No 24
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=5.5e-29 Score=225.94 Aligned_cols=178 Identities=20% Similarity=0.132 Sum_probs=148.9
Q ss_pred hHHHHh---hCCcccc----ccCCCCCcHHHHHHHc---CCHHHHHHHhhcCCccc------c----cccCCCCchHHHH
Q 041107 2 PLLLLD---KKKSLTR----ERDRHGWTPLHYAVYL---DRCFISKCLLEADKSAA------L----ISDEDRKMTALHL 61 (374)
Q Consensus 2 ~~~lL~---~~~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~------~----~~d~~~g~tpLh~ 61 (374)
++.|++ ..+..++ ..|..|+||||+|+.. |+.+++++|+++|++.. + .+|. .|+||||+
T Consensus 29 v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~-~g~tpL~~ 107 (273)
T 2pnn_A 29 LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHI 107 (273)
T ss_dssp TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT-TTCCHHHH
T ss_pred HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC-CCCCHHHH
Confidence 455665 2444444 4588999999999987 99999999999876531 2 2556 89999999
Q ss_pred HHHcCCHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHHhccHHHHHhHHhhccc---chhhhcccCC
Q 041107 62 AAGRGDVWMVQEIIDHCPECCEVVDD--------------RGWNVLHFAMVSFYARDLKHLVDKYPA---VRNLIFKKDV 124 (374)
Q Consensus 62 Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~n~~d~ 124 (374)
|+..|+.+++++|+++|+++ +..|. .|+||||+|+.+|+.+++++|+ + .|+++|.+|.
T Consensus 108 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll----~~~~~gad~~~~d~ 182 (273)
T 2pnn_A 108 AIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL----QNSWQPADISARDS 182 (273)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH----HCSSCCCCTTCCCT
T ss_pred HHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH----hcccCCCCceeeCC
Confidence 99999999999999999996 66665 7999999999999999999999 6 7899999999
Q ss_pred CCCcHHHHHHhhcc---------ccccceeeeccccccccccc-------cccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107 125 KGNTPFHVLAAVCR---------QSYDARYDIVPWKIAKAHFQ-------ATNKQNISAEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 125 ~G~T~LH~A~~~g~---------~~~~~~l~L~~~l~~g~~~~-------~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
+|+||||+|+..|+ ..+++.| ++.|++++ .+|.+|+||+|+|...+.. +++++|.+
T Consensus 183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L-----l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~---~iv~~Ll~ 254 (273)
T 2pnn_A 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEI-----LILGAKLHPTLKLEEITNRKGLTPLALAASSGKI---GVLAYILQ 254 (273)
T ss_dssp TSCCHHHHHHHHCCSCHHHHHHHHHHHHHH-----HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHH
T ss_pred CCCcHHHHHHHccCcchhHHHHHHHHHHHH-----HHhhhhcccccccccccCCCCCCHHHHHHHhChH---HHHHHHHH
Confidence 99999999999886 2344444 78899996 5999999999999888876 88888888
Q ss_pred cCCCC
Q 041107 189 DGSGQ 193 (374)
Q Consensus 189 ~~~~~ 193 (374)
.|+..
T Consensus 255 ~ga~d 259 (273)
T 2pnn_A 255 REIHE 259 (273)
T ss_dssp HHTC-
T ss_pred CCCCC
Confidence 77743
No 25
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=2e-28 Score=224.81 Aligned_cols=177 Identities=20% Similarity=0.129 Sum_probs=137.9
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.||+. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 56 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 132 (299)
T 1s70_B 56 VLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHV 132 (299)
T ss_dssp HHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 4566665 4678999999999999999999999999999999999 88998 9999999999999999999999999986
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhh--------------------------cccCCCCCcHHHHHHh
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLI--------------------------FKKDVKGNTPFHVLAA 135 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~--------------------------n~~d~~G~T~LH~A~~ 135 (374)
+..|..|.||||+|+..++.++++.++.. .+.++ ...|..|+||||+|+.
T Consensus 133 -~~~~~~g~t~l~~A~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 133 -GAVNSEGDTPLDIAEEEAMEELLQNEVNR---QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp -TCCCTTSCCHHHHCCSHHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred -CCcCCCCCCHHHHHHhcchHHHHHHHHhh---cCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence 67787888888888777777777766531 11111 2245677888888888
Q ss_pred hccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 136 VCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 136 ~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
.|+...++.| ++.|++++..|..|.||+|+|...+.. +++++|.+.|+..
T Consensus 209 ~g~~~~v~~L-----l~~g~d~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~ 258 (299)
T 1s70_B 209 KGYTEVLKLL-----IQARYDVNIKDYDGWTPLHAAAHWGKE---EACRILVENLCDM 258 (299)
T ss_dssp HTCHHHHHHH-----HTTTCCTTCCCTTCCCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred CCcHHHHHHH-----HHcCCCCCCcCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCC
Confidence 7776666554 677788888888888888887776665 6666666665543
No 26
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=3.2e-29 Score=233.87 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=142.1
Q ss_pred HHHhhCCccccc-cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCC---HHHHHHHHHhCC
Q 041107 4 LLLDKKKSLTRE-RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGD---VWMVQEIIDHCP 79 (374)
Q Consensus 4 ~lL~~~~~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~---~~~v~~Ll~~~~ 79 (374)
++|...+.++|. +|.+|+||||+||..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+ .++++.|++.+.
T Consensus 114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~-~g~TpLh~A~~~g~~~~~~~~~~ll~~~~ 191 (327)
T 1sw6_A 114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLY 191 (327)
T ss_dssp HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCT-TCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence 455667788999 8999999999999999999999999999999 99999 99999999999998 788888998874
Q ss_pred CccccccCCCCcHHHHHHH----hccHHHHHhHHhhcccc----------------h-----------------------
Q 041107 80 ECCEVVDDRGWNVLHFAMV----SFYARDLKHLVDKYPAV----------------R----------------------- 116 (374)
Q Consensus 80 ~~~~~~d~~g~t~Lh~A~~----~~~~~~~~~Ll~~~~~~----------------~----------------------- 116 (374)
...+.+|..|+||||+|+. .|+.+++++|++..... +
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~L 271 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHH
Confidence 4458899999999999999 89999999998532100 0
Q ss_pred --hhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107 117 --NLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY 173 (374)
Q Consensus 117 --~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~ 173 (374)
.++|.+|.+|+||||+|++.|+.+.++.| ++.|++++.+|.+|+||+|+|.+
T Consensus 272 l~~~~n~~d~~G~TpLh~A~~~g~~~~v~~L-----l~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 272 IANMLNAQDSNGDTCLNIAARLGNISIVDAL-----LDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHH-----HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred HHhCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCcccCCCCCCHHHHHHh
Confidence 05889999999999999999987777766 78899999999999999999864
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=1.7e-28 Score=216.15 Aligned_cols=160 Identities=21% Similarity=0.202 Sum_probs=144.1
Q ss_pred hHHHHhhCC-ccccc-cCCCCCcHHHHHHHcCCHHHHHHHhhcC--CcccccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107 2 PLLLLDKKK-SLTRE-RDRHGWTPLHYAVYLDRCFISKCLLEAD--KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77 (374)
Q Consensus 2 ~~~lL~~~~-~~~~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 77 (374)
++.|++..+ ..++. .|..|+||||+|+..|+.+++++|++++ +++ +.++. .|+||||+|+..|+.+++++|+++
T Consensus 52 v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 52 TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITN-QGVTCLHLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp HHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCc-CCCCHHHHHHHcCCHhHHHHHHHc
Confidence 456666651 33444 8899999999999999999999999998 777 88888 999999999999999999999999
Q ss_pred CCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhccccccceeeecccc-cccc
Q 041107 78 CPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWK-IAKA 155 (374)
Q Consensus 78 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l-~~g~ 155 (374)
++++ +.+|..|+||||+|+..|+.+++++|+ +.+ .++|.+|.+|+||||+|+..|+.+.++.| + +.|+
T Consensus 130 g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~~ga 199 (228)
T 2dzn_A 130 GASV-RIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL-----VEKYGA 199 (228)
T ss_dssp TCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH----TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHHCC
T ss_pred CCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH----hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHH-----HHhcCC
Confidence 9996 889999999999999999999999998 677 89999999999999999999987777766 6 8899
Q ss_pred ccccccCCCCChHHHHHh
Q 041107 156 HFQATNKQNISAEHIYRY 173 (374)
Q Consensus 156 ~~~~~n~~g~t~l~~a~~ 173 (374)
+++.+|.+|+||+++|.+
T Consensus 200 ~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 200 EYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp CSCCBCTTSCBGGGGCSS
T ss_pred CCCccCCCCCcHHHHHHH
Confidence 999999999999999943
No 28
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.1e-28 Score=208.32 Aligned_cols=158 Identities=15% Similarity=0.036 Sum_probs=135.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS 99 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 99 (374)
+.||||.|+..|+.++++.|++.+++..+.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||+|+.+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 578999999999999999999988885588888 9999999999999999999999999886 78889999999999999
Q ss_pred ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCc-c
Q 041107 100 FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPD-L 178 (374)
Q Consensus 100 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~-~ 178 (374)
++.+++++|+ +.+.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|.+|+||+++|...+.. .
T Consensus 80 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 150 (172)
T 3v30_A 80 GYTDIVGLLL----ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL-----LARGADLTTEADSGYTPMDLAVALGYRKV 150 (172)
T ss_dssp TCHHHHHHHH----TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHhCcHHH
Confidence 9999999998 77889999999999999999999887777665 788999999999999999998765544 5
Q ss_pred HHHHHHHHHh
Q 041107 179 EQEIQELSKA 188 (374)
Q Consensus 179 ~~~i~~~l~~ 188 (374)
++.+++...+
T Consensus 151 ~~~L~~~~~~ 160 (172)
T 3v30_A 151 QQVIENHILK 160 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665554
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=224.13 Aligned_cols=178 Identities=18% Similarity=0.084 Sum_probs=133.1
Q ss_pred hHHHHhhCCc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHH
Q 041107 2 PLLLLDKKKS-------LTRERDRHGWTPLHYAVYLDRC-FISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQE 73 (374)
Q Consensus 2 ~~~lL~~~~~-------~~~~~d~~g~TpLh~Aa~~g~~-~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~ 73 (374)
++.||+.... .++..|..|.||||.|+..++. ++++.|++.|+++ +.+|. +|+||||+|+..|+.+++++
T Consensus 27 v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~-~G~TpLh~A~~~g~~~~v~~ 104 (269)
T 4b93_B 27 VRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ-DGSSPLHVAALHGRADLIPL 104 (269)
T ss_dssp HHHHHTCC----------------------------------------CCCCT-TCCCT-TSCCHHHHHHHTTCTTHHHH
T ss_pred HHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHH
Confidence 5677765543 3567788999999999998875 5889999999999 99999 99999999999999999999
Q ss_pred HHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccc
Q 041107 74 IIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIA 153 (374)
Q Consensus 74 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~ 153 (374)
|++.++++ ...+.+|.||+|.|+..++.+++++|+ +.|.++|.+|.+|+||||+|++.|+.+.++.| ++.
T Consensus 105 Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll----~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~L-----l~~ 174 (269)
T 4b93_B 105 LLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLL----DSNAKPNKKDLSGNTPLIYACSGGHHELVALL-----LQH 174 (269)
T ss_dssp HHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHH-----HHT
T ss_pred HHhcCCCc-CccCCCCCCccccccccChHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH-----HHC
Confidence 99999996 888999999999999999999999998 78899999999999999999999998777766 889
Q ss_pred ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 154 KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 154 g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
|+++|..|..|.||||+|...+.. +++++|.+.|+...
T Consensus 175 gadvn~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 175 GASINASNNKGNTALHEAVIEKHV---FVVELLLLHGASVQ 212 (269)
T ss_dssp TCCTTCBCTTSCBHHHHHHHTTCH---HHHHHHHHTTCCSC
T ss_pred CCCCCccccCCCcHHHHHHHcCCH---HHHHHHHHCCCCCC
Confidence 999999999999999999888876 78888888776543
No 30
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.2e-28 Score=205.61 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=143.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107 18 RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM 97 (374)
Q Consensus 18 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 97 (374)
+...||||.|+..|+.+++++|++++.++ +.+|. .|+||||+|+. |+.+++++|++.++++ +.+|..|+||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNV-NAQNG-FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCT-TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCc-cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 35679999999999999999999999999 88998 99999999999 9999999999999986 888999999999999
Q ss_pred HhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc-cccccCCCCChHHHHHhCCC
Q 041107 98 VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH-FQATNKQNISAEHIYRYGFP 176 (374)
Q Consensus 98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~-~~~~n~~g~t~l~~a~~~~~ 176 (374)
.+++.+++++|+ +.|.++|.+|.+|+||||+|++.|+.+.++.| ++.|++ ++..|..|+||+++|...+.
T Consensus 79 ~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 79 RAGFLDTLQTLL----EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL-----VKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp HHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 999999999999 77899999999999999999999987777666 788887 69999999999999988877
Q ss_pred ccHHHHHHHHHhcCC
Q 041107 177 DLEQEIQELSKADGS 191 (374)
Q Consensus 177 ~~~~~i~~~l~~~~~ 191 (374)
. ++.+++.+.|+
T Consensus 150 ~---~~~~~Ll~~GA 161 (162)
T 1ihb_A 150 N---EVVSLMQANGA 161 (162)
T ss_dssp H---HHHHHHHHTC-
T ss_pred H---HHHHHHHHhCC
Confidence 6 88888888765
No 31
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=3e-28 Score=205.56 Aligned_cols=155 Identities=20% Similarity=0.188 Sum_probs=139.0
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++..+..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 18 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 95 (172)
T 3v30_A 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAK-ERESALSLASTGGYTDIVGLLLERDVDI 95 (172)
T ss_dssp HHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcc-cCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 578888888889999999999999999999999999999999999 89999 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+.+++.+++++|+ +.|++++.+|.+|+||||+|+..|+.+.++.| ++.+++....|
T Consensus 96 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----~~~~~~~~~~~ 165 (172)
T 3v30_A 96 -NIYDWNGGTPLLYAVRGNHVKCVEALL----ARGADLTTEADSGYTPMDLAVALGYRKVQQVI-----ENHILKLFQSN 165 (172)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHHHHHSCC-
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHhCcHHHHHHH-----HHHHHHHhccc
Confidence 888999999999999999999999999 77899999999999999999999987777766 89999999999
Q ss_pred CCCCChH
Q 041107 162 KQNISAE 168 (374)
Q Consensus 162 ~~g~t~l 168 (374)
..|.||.
T Consensus 166 ~~~~~pe 172 (172)
T 3v30_A 166 LVPADPE 172 (172)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 9998883
No 32
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=224.57 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=147.8
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCC-cccccccCCCCchHHHHHH-----HcCCHHHHHHHHHhCCCccccc
Q 041107 12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADK-SAALISDEDRKMTALHLAA-----GRGDVWMVQEIIDHCPECCEVV 85 (374)
Q Consensus 12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~~g~tpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~ 85 (374)
.+|.+|.+|+||||+|+..|+.+++++|++.|+ ++ +.+|. .|+||||+|+ ..|+.++++.|++.+... ...
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~-~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~ 179 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNR-AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKA 179 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCT-TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCC
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCC-CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-ccc
Confidence 478899999999999999999999999999998 65 89999 9999999999 678999999999999775 778
Q ss_pred cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccc-cccccccccCCC
Q 041107 86 DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI-AKAHFQATNKQN 164 (374)
Q Consensus 86 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~-~g~~~~~~n~~g 164 (374)
|..|+||||+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.++.| ++ .|++++.+|.+|
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll----~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~L-----l~~~gad~~~~d~~g 250 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALL----ACEADVNVQDDDGSTALMCACEHGHKEIAGLL-----LAVPSCDISLTDRDG 250 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HTSTTCCTTCCCTTS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH-----HhcCCCCCcCcCCCC
Confidence 899999999999999999999999 78999999999999999999999998777766 56 899999999999
Q ss_pred CChHHHHHhCCCccHHHHHHHHHh
Q 041107 165 ISAEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 165 ~t~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
+||+++|...+.. ++.++|.+
T Consensus 251 ~TpL~~A~~~g~~---~iv~~Ll~ 271 (276)
T 4hbd_A 251 STALMVALDAGQS---EIASMLYS 271 (276)
T ss_dssp CCHHHHHHHHTCH---HHHHHHHH
T ss_pred CCHHHHHHHcCCH---HHHHHHHh
Confidence 9999999887776 66666655
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.95 E-value=2.2e-28 Score=222.13 Aligned_cols=171 Identities=21% Similarity=0.155 Sum_probs=150.0
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCC
Q 041107 13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGW 90 (374)
Q Consensus 13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 90 (374)
++.+|.+|+||||+|++.|+.+++++|++++++. .+.+|. .|+||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~ 79 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGH 79 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence 5678999999999999999999999999988772 378888 9999999999999999999999999996 88899999
Q ss_pred cHHHHHHHhccHHHHHhHHhhcc-------------------------------------------cchhhhcccCCCCC
Q 041107 91 NVLHFAMVSFYARDLKHLVDKYP-------------------------------------------AVRNLIFKKDVKGN 127 (374)
Q Consensus 91 t~Lh~A~~~~~~~~~~~Ll~~~~-------------------------------------------~~~~~~n~~d~~G~ 127 (374)
||||+|+..++.+++++|++... ..+.+++.+|.+|+
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence 99999999999999999985321 12345888999999
Q ss_pred cHHHHHHhhccccccceeeeccccccccccccccCC-CCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 128 TPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQ-NISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 128 T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~-g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
||||+|+..|+...++.| ++.|++++..+.. |+||+|+|...+.. +++++|.+.|+..
T Consensus 160 t~L~~A~~~g~~~~v~~L-----l~~g~~~~~~~~~~g~tpL~~A~~~~~~---~~v~~Ll~~gad~ 218 (282)
T 1oy3_D 160 TPLHVAVIHKDAEMVRLL-----RDAGADLNKPEPTCGRTPLHLAVEAQAA---SVLELLLKAGADP 218 (282)
T ss_dssp CHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred CHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCcCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence 999999999987777766 8899999999865 99999999887776 7888888876654
No 34
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.95 E-value=6e-28 Score=214.05 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=147.8
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC-CcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD-KSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE 80 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 80 (374)
++.|+ ..+..++.+|..|.||||+|+..|+.+++++|++++ .++ +..+. .|+||||+|+..|+.+++++|++.+++
T Consensus 60 v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 136 (237)
T 3b7b_A 60 VKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-NCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD 136 (237)
T ss_dssp HHHHH-TTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 34444 556778999999999999999999999999999998 555 88888 999999999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107 81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT 160 (374)
Q Consensus 81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~ 160 (374)
+ +..|..|+||||+|+..|+.+++++|+ +.|.+++.+|.+|+||||+|++.|+.+.+..| ++.|++++.+
T Consensus 137 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~gad~~~~ 206 (237)
T 3b7b_A 137 I-NIRDNEENICLHWAAFSGCVDIAEILL----AAKCDLHAVNIHGDSPLHIAARENRYDCVVLF-----LSRDSDVTLK 206 (237)
T ss_dssp T-TCCCTTSCCHHHHHHHHCCHHHHHHHH----TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HTTTCCTTCC
T ss_pred C-CccCCCCCCHHHHHHHCCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH-----HHcCCCCCcc
Confidence 6 888999999999999999999999999 78899999999999999999999987777665 8899999999
Q ss_pred cCCCCChHHHHHhCCCc
Q 041107 161 NKQNISAEHIYRYGFPD 177 (374)
Q Consensus 161 n~~g~t~l~~a~~~~~~ 177 (374)
|.+|+||+++|...++.
T Consensus 207 d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 207 NKEGETPLQCASLNSQV 223 (237)
T ss_dssp CTTSCCHHHHSCTTCHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999766543
No 35
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.95 E-value=9.7e-29 Score=219.45 Aligned_cols=171 Identities=18% Similarity=0.102 Sum_probs=148.8
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCC----cccccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADK----SAALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 77 (374)
++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++++ ++ +.+|. .|+||||+|+..|+.+++++|++.
T Consensus 62 v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~ 138 (241)
T 1k1a_A 62 VRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNY-DGLTALHVAVNTECQETVQLLLER 138 (241)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCc-CCCcHHHHHHHcCCHHHHHHHHHc
Confidence 344554 567889999999999999999999999999999887 66 77888 999999999999999999999999
Q ss_pred CCCcccccc-CCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107 78 CPECCEVVD-DRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 78 ~~~~~~~~d-~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
++++ +..| ..|+||||+|+.+++.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++
T Consensus 139 g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~ 208 (241)
T 1k1a_A 139 GADI-DAVDIKSGRSPLIHAVENNSLSMVQLLL----QHGANVNAQMYSGSSALHSASGRGLLPLVRTL-----VRSGAD 208 (241)
T ss_dssp TCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH-----HHTTCC
T ss_pred CCCc-ccccccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HhcCCC
Confidence 9997 5666 89999999999999999999999 77899999999999999999999987777766 889999
Q ss_pred cccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107 157 FQATNKQNISAEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 157 ~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
++.+|.+|+||+++|...+.. ++++.+.+
T Consensus 209 ~~~~~~~g~tpl~~A~~~~~~---~i~~~l~~ 237 (241)
T 1k1a_A 209 SSLKNCHNDTPLMVARSRRVI---DILRGKAT 237 (241)
T ss_dssp TTCCCTTSCCTTTTCSSHHHH---HHHTC---
T ss_pred CCCcCCCCCCHHHHHHhcCcH---HHHhhhcc
Confidence 999999999999999654333 55554444
No 36
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.1e-28 Score=208.04 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=144.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96 (374)
Q Consensus 17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 96 (374)
+.++.+|||.|+..|+.++++.|++.+....+.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 357899999999999999999999985544488998 9999999999999999999999999996 88899999999999
Q ss_pred HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCC
Q 041107 97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFP 176 (374)
Q Consensus 97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~ 176 (374)
+.+++.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++..|.+|+||+++|...+.
T Consensus 80 ~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~tpl~~A~~~~~ 150 (179)
T 3f6q_A 80 ASHGHRDIVQKLL----QYKADINAVNEHGNVPLHYACFWGQDQVAEDL-----VANGALVSICNKYGEMPVDKAKAPLR 150 (179)
T ss_dssp HHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSSBCCTTSCCGGGGSCHHHH
T ss_pred HHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCcchhccCCCCcHHHHHHHHH
Confidence 9999999999999 77899999999999999999999987777666 88999999999999999999965444
Q ss_pred ccHHHHHHHHHhcCCCCCC
Q 041107 177 DLEQEIQELSKADGSGQYP 195 (374)
Q Consensus 177 ~~~~~i~~~l~~~~~~~~~ 195 (374)
. ++.+.+.+.++....
T Consensus 151 ~---~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 151 E---LLRERAEKMGQNLNR 166 (179)
T ss_dssp H---HHHHHHHHTTCCCSC
T ss_pred H---HHHHHHHHhhcCccc
Confidence 3 888888887776643
No 37
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2.4e-28 Score=202.30 Aligned_cols=151 Identities=17% Similarity=0.014 Sum_probs=137.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHh
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVS 99 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 99 (374)
+.||||.|++.|+.+++++|++++++. + .+. .|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 468999999999999999999999877 4 577 8999999999999999999999999996 88899999999999999
Q ss_pred ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccH
Q 041107 100 FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLE 179 (374)
Q Consensus 100 ~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~ 179 (374)
++.+++++|+ +.|.++|.+|.+|+||||+|+..|+.+.++.| ++.|++++.+|..|+||+++|...+..
T Consensus 78 ~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A~~~~~~-- 146 (153)
T 1awc_B 78 GHANIVEVLL----KHGADVNAKDMLKMTALHWATEHNHQEVVELL-----IKYGADVHTQSKFCKTAFDISIDNGNE-- 146 (153)
T ss_dssp TCHHHHHHHH----TTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH--
T ss_pred ChHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCccccCCCCCCHHHHHHHcCCH--
Confidence 9999999999 77899999999999999999999987777665 788999999999999999999887776
Q ss_pred HHHHHHH
Q 041107 180 QEIQELS 186 (374)
Q Consensus 180 ~~i~~~l 186 (374)
++.++|
T Consensus 147 -~i~~~L 152 (153)
T 1awc_B 147 -DLAEIL 152 (153)
T ss_dssp -HHHHHH
T ss_pred -HHHHHh
Confidence 555544
No 38
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=1e-28 Score=222.33 Aligned_cols=169 Identities=19% Similarity=0.096 Sum_probs=142.2
Q ss_pred hCCccccccC----CCCCcHHHHHH---HcCCHHHHHHHhhcCCcc----------cccccCCCCchHHHHHHHcCCHHH
Q 041107 8 KKKSLTRERD----RHGWTPLHYAV---YLDRCFISKCLLEADKSA----------ALISDEDRKMTALHLAAGRGDVWM 70 (374)
Q Consensus 8 ~~~~~~~~~d----~~g~TpLh~Aa---~~g~~~~v~~Ll~~~~~~----------~~~~d~~~g~tpLh~Aa~~g~~~~ 70 (374)
..+..++..+ .+|+||||+|+ +.|+.+++++|++.+++. ....|. .|+||||+|+..|+.++
T Consensus 30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~ 108 (260)
T 3jxi_A 30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY-RGQTALHIAIERRCKHY 108 (260)
T ss_dssp HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE-ESBCHHHHHHHTTCHHH
T ss_pred hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc-CCCCHHHHHHHcCCHHH
Confidence 3455666555 77999999999 779999999999987542 134455 89999999999999999
Q ss_pred HHHHHHhCCCcccccc--------------CCCCcHHHHHHHhccHHHHHhHHhhccc---chhhhcccCCCCCcHHHHH
Q 041107 71 VQEIIDHCPECCEVVD--------------DRGWNVLHFAMVSFYARDLKHLVDKYPA---VRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 71 v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~n~~d~~G~T~LH~A 133 (374)
+++|+++|+++ +..| ..|+||||+|+.+|+.+++++|+ + .|+++|.+|.+|+||||+|
T Consensus 109 v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll----~~~~~ga~~~~~d~~g~TpLh~A 183 (260)
T 3jxi_A 109 VELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT----ENGHKQADLRRQDSRGNTVLHAL 183 (260)
T ss_dssp HHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH----HCSSCCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH----hccccCCCCcccCCCCCcHHHHH
Confidence 99999999996 6666 68999999999999999999999 6 7899999999999999999
Q ss_pred Hhhcc---------ccccceeeecccccccccc-------ccccCCCCChHHHHHhCCCccHHHHHHHHHhcC
Q 041107 134 AAVCR---------QSYDARYDIVPWKIAKAHF-------QATNKQNISAEHIYRYGFPDLEQEIQELSKADG 190 (374)
Q Consensus 134 ~~~g~---------~~~~~~l~L~~~l~~g~~~-------~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~ 190 (374)
++.|+ ...++.| ++.|+++ +..|.+|+||+|+|...++. +++++|.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~L-----l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~---~~v~~Ll~~g 248 (260)
T 3jxi_A 184 VAIADNTRENTKFVTKMYDLL-----LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI---GIFQHIIRRE 248 (260)
T ss_dssp HHHCCSSHHHHHHHHHHHHHH-----HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH---HHHHHHHHHH
T ss_pred HHhccCchhHHHHHHHHHHHH-----HHhCcccccccchhhcccCCCCCHHHHHHHcCCH---HHHHHHHHhC
Confidence 98776 2344444 8899999 78999999999999888776 6666666643
No 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.95 E-value=4.3e-28 Score=229.20 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=128.4
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccc--------------------------------
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALI-------------------------------- 49 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-------------------------------- 49 (374)
++.|++. +..++.+|..|+||||+|+..|+.+++++|++++++. +.
T Consensus 36 v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 36 VRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 4555654 5778889999999999999999999999999887755 22
Q ss_pred --------------------ccCCCCchHHHHHHHcC--CHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHh
Q 041107 50 --------------------SDEDRKMTALHLAAGRG--DVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKH 107 (374)
Q Consensus 50 --------------------~d~~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~ 107 (374)
+|. .|.||||+|+..| +.+++++|++.++++ +..|..|+||||+|+.+|+.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~ 191 (364)
T 3ljn_A 114 PESLLNECDEREVNEIGSHVKHC-KGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDL 191 (364)
T ss_dssp HHHHHTCCCCCCEEEETTEEEEE-SCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcchHhhhhhccccCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 555 6777777777777 777777777777775 6677777777777777777777777
Q ss_pred HHhhcccchhh-----hcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHH
Q 041107 108 LVDKYPAVRNL-----IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEI 182 (374)
Q Consensus 108 Ll~~~~~~~~~-----~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i 182 (374)
|+ +.+.+ +|.+|.+|+||||+|+..|+.+.++.| ++.|++++..|.+|+||+++|...+.. ++
T Consensus 192 Ll----~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~g~~---~~ 259 (364)
T 3ljn_A 192 MM----DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF-----VEMGIDVNMEDNEHTVPLYLSVRAAMV---LL 259 (364)
T ss_dssp HH----HHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHH-----HTTTCCTTCCCTTSCCHHHHHHHTCCH---HH
T ss_pred HH----hcccccccccccccCCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCHHHHHHHhChH---HH
Confidence 77 44444 777777778888888777776666554 677778888888888888877766655 55
Q ss_pred HHHHHhcC
Q 041107 183 QELSKADG 190 (374)
Q Consensus 183 ~~~l~~~~ 190 (374)
+++|.+.+
T Consensus 260 v~~Ll~~~ 267 (364)
T 3ljn_A 260 TKELLQKT 267 (364)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHcC
Confidence 66555544
No 40
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=219.32 Aligned_cols=174 Identities=17% Similarity=0.023 Sum_probs=135.4
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus 75 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 151 (285)
T 3d9h_A 75 LRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASV 151 (285)
T ss_dssp HHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence 3444543 5667888888888888888888888888888888887 77777 8888888888888888888888888775
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
. .+.+|+||||+|+..|+.+++++|+ +.+.+++.+|.+|+||||+|+..|+.+.++.| ++.|++++. |
T Consensus 152 -~-~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~-~ 219 (285)
T 3d9h_A 152 -Q-PESDLASPIHEAARRGHVECVNSLI----AYGGNIDHKISHLGTPLYLACENQQRACVKKL-----LESGADVNQ-G 219 (285)
T ss_dssp -S-CSCTTSCHHHHHHHHTCHHHHHHHH----HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH-----HHTTCCTTC-C
T ss_pred -C-CCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH-----HHCCCCCCC-C
Confidence 2 3445888888888888888888887 67778888888888888888888876666655 677888884 7
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
..|.||+|+|...+.. +++++|.+.++..
T Consensus 220 ~~g~t~L~~A~~~~~~---~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 220 KGQDSPLHAVVRTASE---ELACLLMDFGADT 248 (285)
T ss_dssp BTTBCHHHHHHHTTCH---HHHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHcCCH---HHHHHHHHCCCCC
Confidence 8888888888777665 6777777766543
No 41
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=216.52 Aligned_cols=168 Identities=17% Similarity=0.080 Sum_probs=147.3
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++|+++ +. +. +|.||||+|+..|+.++++.|+++++++
T Consensus 52 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 127 (261)
T 2xai_A 52 VKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ES-DLASPIHEAARRGHVECVNSLIAYGGNI 127 (261)
T ss_dssp HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SC-TTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CC-CC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 445555 46889999999999999999999999999999999988 43 44 7999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+.+++.+++++|+ +.|.++|. |.+|+||||+|++.|+.+.++.| ++.|+|++.+|
T Consensus 128 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~L-----l~~gad~~~~d 196 (261)
T 2xai_A 128 -DHKISHLGTPLYLACENQQRACVKKLL----ESGADVNQ-GKGQDSPLHAVARTASEELACLL-----MDFGADTQAKN 196 (261)
T ss_dssp -TCCBTTTBCHHHHHHHTTCHHHHHHHH----HHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCC
T ss_pred -CcCCCCCCCHHHHHHHhCCHHHHHHHH----HcCCCCCC-CCCCCChHHHHHHcCCHHHHHHH-----HHcCCCCCCcC
Confidence 889999999999999999999999999 77888885 89999999999999987777666 78999999999
Q ss_pred CCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 162 KQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
.+|+||+|+|.... .+.+.+.+.
T Consensus 197 ~~g~tpl~~A~~~~-----~~~~~ll~~ 219 (261)
T 2xai_A 197 AEGKRPVELVPPES-----PLAQLFLER 219 (261)
T ss_dssp TTSCCGGGGSCTTC-----THHHHHHHC
T ss_pred CCCCChhhhccccc-----cHHHHHHhc
Confidence 99999999997432 244555553
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=1.3e-27 Score=211.35 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=145.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc----ccccCCCCcHH
Q 041107 19 HGWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC----EVVDDRGWNVL 93 (374)
Q Consensus 19 ~g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~t~L 93 (374)
.|+||||+|++.|+.++++.|++. +.++ +.+|. .|+||||+|+..|+.+++++|++.+++.. ...|..|+|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 589999999999999999999997 8888 89999 99999999999999999999999998753 45677999999
Q ss_pred HHHHHhccHHHHHhHHhhcccchhhhcccCC-------------CCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107 94 HFAMVSFYARDLKHLVDKYPAVRNLIFKKDV-------------KGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT 160 (374)
Q Consensus 94 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~-------------~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~ 160 (374)
|+|+.+|+.+++++|+ +.|.+++.+|. +|+||||+|+..|+.+.++.| ++.|++++.+
T Consensus 80 ~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~ 150 (232)
T 2rfa_A 80 HIAVINQNVNLVRALL----ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-----IEHGADIRAQ 150 (232)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH-----HHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHHH----hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCC
Confidence 9999999999999999 66778877765 899999999999987777766 7889999999
Q ss_pred cCCCCChHHHHHhCCCc-cHHHHHHHHHhcCCCC
Q 041107 161 NKQNISAEHIYRYGFPD-LEQEIQELSKADGSGQ 193 (374)
Q Consensus 161 n~~g~t~l~~a~~~~~~-~~~~i~~~l~~~~~~~ 193 (374)
|.+|+||+|+|...+.. .+..+++++.+.++..
T Consensus 151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 99999999999876655 3456668888877754
No 43
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.95 E-value=1.6e-27 Score=230.63 Aligned_cols=157 Identities=19% Similarity=0.149 Sum_probs=108.6
Q ss_pred CCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 041107 9 KKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR 88 (374)
Q Consensus 9 ~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 88 (374)
.+..++.+|..|.||||+|+..|+.+++++|+++++++ +.++. .|+||||+|+..|+.+++++|++++.++ +..|..
T Consensus 234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 310 (437)
T 1n11_A 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM 310 (437)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS
T ss_pred cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCC
Confidence 34456666666777777777777777777777766666 66666 6777777777777777777777776664 566677
Q ss_pred CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107 89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE 168 (374)
Q Consensus 89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l 168 (374)
|+||||+|+.+|+.+++++|+ +.|+++|.+|..|+||||+|++.|+.++++.| ++.|++++.+|.+|+||+
T Consensus 311 g~t~L~~A~~~g~~~~v~~Ll----~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~L-----l~~ga~~~~~~~~g~t~l 381 (437)
T 1n11_A 311 GYTPLHVASHYGNIKLVKFLL----QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL-----LKNGASPNEVSSDGTTPL 381 (437)
T ss_dssp CCCHHHHHHHSSCSHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCSCCCCSSSCCHH
T ss_pred CCCHHHHHHHcCcHHHHHHHH----hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHH-----HHCcCCCCCCCCCCCCHH
Confidence 777777777777777777776 56667777777777777777777766555544 666777777777777777
Q ss_pred HHHHhCCCc
Q 041107 169 HIYRYGFPD 177 (374)
Q Consensus 169 ~~a~~~~~~ 177 (374)
++|.+.+..
T Consensus 382 ~~A~~~g~~ 390 (437)
T 1n11_A 382 AIAKRLGYI 390 (437)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHcCcH
Confidence 777666655
No 44
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.95 E-value=4.7e-27 Score=213.22 Aligned_cols=176 Identities=15% Similarity=0.017 Sum_probs=137.8
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++
T Consensus 55 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 131 (285)
T 1wdy_A 55 VELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDF-YGFTAFMEAAVYGKVKALKFLYKRGANV 131 (285)
T ss_dssp HHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCc-ccCCHHHHHHHhCCHHHHHHHHHhCCCc
Confidence 344444 46678888889999999999999999999999998888 88888 8999999999999999999999988875
Q ss_pred cccc----------cCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcc----ccccceeee
Q 041107 82 CEVV----------DDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCR----QSYDARYDI 147 (374)
Q Consensus 82 ~~~~----------d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~----~~~~~~l~L 147 (374)
+.. +..|.||||.|+..++.+++++|++ ..+.+++.+|..|+||||+|+..++ ...++.|
T Consensus 132 -~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~L-- 205 (285)
T 1wdy_A 132 -NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL-- 205 (285)
T ss_dssp -TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH---TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHH--
T ss_pred -ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH---hcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHH--
Confidence 443 6788899999999999999988873 2377788888888888888888776 3333333
Q ss_pred ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh-cCCC
Q 041107 148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA-DGSG 192 (374)
Q Consensus 148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~-~~~~ 192 (374)
++.|++++.+|..|+||+|+|...+.. ++++++.+ .+..
T Consensus 206 ---l~~g~~~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~~g~~ 245 (285)
T 1wdy_A 206 ---LDHGADVNVRGERGKTPLILAVEKKHL---GLVQRLLEQEHIE 245 (285)
T ss_dssp ---HHTTCCSSCCCTTSCCHHHHHHHTTCH---HHHHHHHHSSSCC
T ss_pred ---HHcCCCCCCcCCCCCcHHHHHHHcCCH---HHHHHHHhccCCC
Confidence 677888888888888888888776665 66666665 4443
No 45
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=2.6e-27 Score=221.46 Aligned_cols=184 Identities=21% Similarity=0.159 Sum_probs=138.9
Q ss_pred ChHHHHhhCCccccccCC-CCCcHHHHHHHcCCHHHHHHHhhcCCcc--------------------------------c
Q 041107 1 VPLLLLDKKKSLTRERDR-HGWTPLHYAVYLDRCFISKCLLEADKSA--------------------------------A 47 (374)
Q Consensus 1 i~~~lL~~~~~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--------------------------------~ 47 (374)
+|+.||+. +.++|.+|. .|+||||+|++.|+.++|++|+++|+++ .
T Consensus 40 ~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T 4g8k_A 40 LVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118 (337)
T ss_dssp HHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchh
Confidence 36677766 577888775 5999999999999999999999988765 1
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc---------ccccCCCCcHHHHHHHhccHHHHHhHHhhc------
Q 041107 48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC---------EVVDDRGWNVLHFAMVSFYARDLKHLVDKY------ 112 (374)
Q Consensus 48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~------ 112 (374)
+.+|. .|+||||+|+..|+.+++++|+++++++. ...+..|+||||+|+++|+.+++++|+++.
T Consensus 119 ~~~d~-~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~ 197 (337)
T 4g8k_A 119 NECDF-YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197 (337)
T ss_dssp TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC
T ss_pred hhhcc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc
Confidence 34566 89999999999999999999999988752 234567899999999999999999988521
Q ss_pred ----------------------------ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC
Q 041107 113 ----------------------------PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN 164 (374)
Q Consensus 113 ----------------------------~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g 164 (374)
.+.|+++|.+|.+|+||||+|+..|+...+..| + ...|+++|.+|.+|
T Consensus 198 ~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L-l---~~~~~~vn~~d~~G 273 (337)
T 4g8k_A 198 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL-L---EQEHIEINDTDSDG 273 (337)
T ss_dssp CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH-H---TSTTCCTTCBCTTS
T ss_pred cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH-H---HhcCCcccCcCCCC
Confidence 123455667777777777777777766555555 3 44577777777777
Q ss_pred CChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 165 ISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 165 ~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
+||||+|...+.. +++++|.+.|+..
T Consensus 274 ~TpL~~A~~~g~~---~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 274 KTALLLAVELKLK---KIAELLCKRGAST 299 (337)
T ss_dssp CBHHHHHHHTTCH---HHHHHHHTTSCSS
T ss_pred CCHHHHHHHcCCH---HHHHHHHHCCCCC
Confidence 7777777766665 6677777766543
No 46
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=215.06 Aligned_cols=166 Identities=13% Similarity=0.036 Sum_probs=150.4
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 041107 12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWN 91 (374)
Q Consensus 12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 91 (374)
..+.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+|
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 127 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA-DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHT 127 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT-TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCC
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCC
Confidence 35778999999999999999999999999999998 99999 9999999999999999999999999996 889999999
Q ss_pred HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107 92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171 (374)
Q Consensus 92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a 171 (374)
|||+|+..++.+++++|+ +.+.+++.. .+|+||||+|+..|+.+.++.| ++.|++++..|.+|.||+++|
T Consensus 128 ~L~~A~~~~~~~~v~~Ll----~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L-----l~~g~~~~~~d~~g~t~L~~A 197 (285)
T 3d9h_A 128 PLFNACVSGSWDCVNLLL----QHGASVQPE-SDLASPIHEAARRGHVECVNSL-----IAYGGNIDHKISHLGTPLYLA 197 (285)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHH-----HHTTCCTTCCBTTTBCHHHHH
T ss_pred HHHHHHHcCHHHHHHHHH----HCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCcCCCCCCHHHHH
Confidence 999999999999999998 667777754 4599999999999987777766 789999999999999999999
Q ss_pred HhCCCccHHHHHHHHHhcCCCC
Q 041107 172 RYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 172 ~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
...+.. +++++|.+.++..
T Consensus 198 ~~~~~~---~~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 198 CENQQR---ACVKKLLESGADV 216 (285)
T ss_dssp HHTTCH---HHHHHHHHTTCCT
T ss_pred HHcCcH---HHHHHHHHCCCCC
Confidence 888776 7888888876654
No 47
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=209.56 Aligned_cols=179 Identities=18% Similarity=0.159 Sum_probs=154.9
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|..|.||||+|+..|+.+++++|++++++.....+. .|.||||+|+..|+.+++++|++.++++
T Consensus 25 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 102 (240)
T 3eu9_A 25 CRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGHLSMVVQLMKYGADP 102 (240)
T ss_dssp HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT-TTBCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC-cCCChhHHHHHcCCHHHHHHHHHcCCCC
Confidence 4555654 5778999999999999999999999999999999998445555 7999999999999999999999999986
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||.|+..++.+++++|+ +.+.+++.+|.+|+||||+|+..++......+ | ++.|++++..+
T Consensus 103 -~~~~~~g~t~l~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~-L---~~~~~~~~~~~ 173 (240)
T 3eu9_A 103 -SLIDGEGCSCIHLAAQFGHTSIVAYLI----AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL-L---LTFNVSVNLGD 173 (240)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH-H---HHTTCCTTCCC
T ss_pred -cccCCCCCCHHHHHHHcCHHHHHHHHH----hcCCCccccCCCCCcHHHHHHHhCChHHHHHH-H---HhcCCCcchhh
Confidence 788999999999999999999999998 77889999999999999999987764444444 5 88899999999
Q ss_pred C-CCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 162 K-QNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 162 ~-~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
. .|.||+|+|...+.. ++++++.+.++...
T Consensus 174 ~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 174 KYHKNTALHWAVLAGNT---TVISLLLEAGANVD 204 (240)
T ss_dssp TTTCCCHHHHHHHHTCH---HHHHHHHHHTCCTT
T ss_pred ccCCCcHHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence 7 999999999877766 77777777766554
No 48
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=1.7e-27 Score=217.89 Aligned_cols=173 Identities=18% Similarity=0.064 Sum_probs=104.5
Q ss_pred HHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccc
Q 041107 4 LLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCE 83 (374)
Q Consensus 4 ~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~ 83 (374)
++|... .++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+ +|+||||+|+..|+.+++++|+++|+++ +
T Consensus 17 ~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~ 89 (285)
T 3kea_A 17 SFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL---ENEFPLHQAATLEDTKIVKILLFSGLDD-S 89 (285)
T ss_dssp HHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCT-T
T ss_pred HHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence 344443 35666777777777777777777777777766665 333 3566777776666666777666666664 5
Q ss_pred cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCC-CcHHHHHHhhcccccccee-----------------
Q 041107 84 VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKG-NTPFHVLAAVCRQSYDARY----------------- 145 (374)
Q Consensus 84 ~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G-~T~LH~A~~~g~~~~~~~l----------------- 145 (374)
.+|..|+||||+|+.+|+.+++++|+ +.|++++.+|.+| +||||+|+..|+.+.++.|
T Consensus 90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 165 (285)
T 3kea_A 90 QFDDKGNTALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCI 165 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHH
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHH
Confidence 56666666666666666666666666 4566666666666 5666655555543333322
Q ss_pred -------------eeccccccccccccccCCCCCh-HHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 146 -------------DIVPWKIAKAHFQATNKQNISA-EHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 146 -------------~L~~~l~~g~~~~~~n~~g~t~-l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
.| ++.|++++.+|..|+|| +|+|...+.. +++++|.+.|+..
T Consensus 166 ~~A~~~g~~~~v~~L---l~~gad~n~~~~~g~t~~L~~A~~~~~~---~~v~~Ll~~gad~ 221 (285)
T 3kea_A 166 HITIKNGHVDMMILL---LDYMTSTNTNNSLLFIPDIKLAIDNKDI---EMLQALFKYDINI 221 (285)
T ss_dssp HHHHHTTCHHHHHHH---HHHHHHTCTTCCCBCCTTHHHHHHHTCH---HHHHHHTTSCBCS
T ss_pred HHHHHcChHHHHHHH---HHcCCCCCcccCCCCChHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence 01 45556666666666665 6666554444 5555555554443
No 49
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=1.1e-26 Score=224.82 Aligned_cols=169 Identities=21% Similarity=0.200 Sum_probs=123.2
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107 10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG 89 (374)
Q Consensus 10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 89 (374)
+..++..+.+|+||||+|+..|+.++++.|+++++++ +.++. .|.||||+|+..|+.+++++|++.+++. +..|..|
T Consensus 202 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g 278 (437)
T 1n11_A 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV-QGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSG 278 (437)
T ss_dssp TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTC
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCC
Confidence 3445556666666666666666666666666666666 66666 7777777777777777777777777764 6667777
Q ss_pred CcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHH
Q 041107 90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEH 169 (374)
Q Consensus 90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~ 169 (374)
+||||+|+..++.+++++|+ +.|.++|.+|..|+||||+|+..|+.+.++.| ++.|+++|.+|..|+||+|
T Consensus 279 ~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~gad~n~~~~~g~t~L~ 349 (437)
T 1n11_A 279 LTPLHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTPLHVASHYGNIKLVKFL-----LQHQADVNAKTKLGYSPLH 349 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH-----HHTTCCTTCCCTTSCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCHHHHHHHcCcHHHHHHH-----HhcCCCCCCCCCCCCCHHH
Confidence 77777777777777777777 66777888888888888888888776666655 6778888888888888888
Q ss_pred HHHhCCCccHHHHHHHHHhcCCCC
Q 041107 170 IYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 170 ~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
+|...++. +++++|.+.|+..
T Consensus 350 ~A~~~g~~---~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 350 QAAQQGHT---DIVTLLLKNGASP 370 (437)
T ss_dssp HHHHTTCH---HHHHHHHHTTCCS
T ss_pred HHHHCChH---HHHHHHHHCcCCC
Confidence 88777665 7777777766654
No 50
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.94 E-value=3.3e-27 Score=224.20 Aligned_cols=173 Identities=18% Similarity=0.115 Sum_probs=141.9
Q ss_pred hhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhC---CCccc
Q 041107 7 DKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHC---PECCE 83 (374)
Q Consensus 7 ~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~~ 83 (374)
...+.++|.+|.+|+||||+|+..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.+ .++ +
T Consensus 153 l~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~ 229 (373)
T 2fo1_E 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDI-E 229 (373)
T ss_dssp HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-S
T ss_pred HhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-h
Confidence 3667889999999999999999999999999999999998 88888 9999999999999999999999877 454 6
Q ss_pred cccCCCCcHHHHHHHhc---cHHHHHhHHhhcccchhhhcc--------cCCCCCcHHHHHHhhccccccceeeeccccc
Q 041107 84 VVDDRGWNVLHFAMVSF---YARDLKHLVDKYPAVRNLIFK--------KDVKGNTPFHVLAAVCRQSYDARYDIVPWKI 152 (374)
Q Consensus 84 ~~d~~g~t~Lh~A~~~~---~~~~~~~Ll~~~~~~~~~~n~--------~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~ 152 (374)
..|..|+||||+|+..+ +.+++++|+ +.|.+++. +|.+|+||||+|+..|+.+.++.| ++
T Consensus 230 ~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll----~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L-----l~ 300 (373)
T 2fo1_E 230 ELDRNGMTALMIVAHNEGRDQVASAKLLV----EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL-----VG 300 (373)
T ss_dssp CCCTTSCCHHHHHHHSCSTTHHHHHHHHH----HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHH-----HH
T ss_pred hcCCCCCCHHHHHHHhCCcchHHHHHHHH----HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHH-----HH
Confidence 77888889999888887 788888888 55666554 677888888888888887777655 44
Q ss_pred c-ccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 153 A-KAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 153 ~-g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
. |++++.+|.+|+||+|+|...+.. +++++|.+.|+...
T Consensus 301 ~~~~~~n~~d~~g~TpL~~A~~~g~~---~iv~~Ll~~gad~~ 340 (373)
T 2fo1_E 301 EKGSNKDKQDEDGKTPIMLAAQEGRI---EVVMYLIQQGASVE 340 (373)
T ss_dssp HSCCCTTCCCTTCCCHHHHHHHHTCH---HHHHHHHHTTCCSS
T ss_pred hcCCCccCcCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCcc
Confidence 4 488888888888888888777665 67777777666543
No 51
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.94 E-value=2.5e-27 Score=225.07 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=155.5
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcC---CcccccccCCCCchHHHHHHHcC---CHHHHHHHH
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEAD---KSAALISDEDRKMTALHLAAGRG---DVWMVQEII 75 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~---~~~~~~~d~~~g~tpLh~Aa~~g---~~~~v~~Ll 75 (374)
++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++++ .++ +..|. .|+||||+|+..| +.+++++|+
T Consensus 182 v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 182 VAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDR-NGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp HHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCT-TSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCC-CCCCHHHHHHHhCCcchHHHHHHHH
Confidence 444554 57789999999999999999999999999999987 677 88898 9999999999998 899999999
Q ss_pred HhCCCccc-------cccCCCCcHHHHHHHhccHHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHhhccccccceeee
Q 041107 76 DHCPECCE-------VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAAVCRQSYDARYDI 147 (374)
Q Consensus 76 ~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L 147 (374)
+.++++.. ..|..|+||||+|+.+|+.+++++|+ +.+ .++|.+|.+|+||||+|+..|+.++++.|
T Consensus 259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll----~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~L-- 332 (373)
T 2fo1_E 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV----GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL-- 332 (373)
T ss_dssp HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH----HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH--
T ss_pred HCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHH----HhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 99998732 25779999999999999999999998 776 89999999999999999999998777766
Q ss_pred ccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107 148 VPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS 191 (374)
Q Consensus 148 ~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~ 191 (374)
++.|++++.+|..|+||+++|...++. +++++|.+.++
T Consensus 333 ---l~~gad~~~~d~~g~t~l~~A~~~g~~---~iv~~Ll~~~a 370 (373)
T 2fo1_E 333 ---IQQGASVEAVDATDHTARQLAQANNHH---NIVDIFDRCRP 370 (373)
T ss_dssp ---HHTTCCSSCCCSSSCCHHHHHHHTTCH---HHHHHHHTTC-
T ss_pred ---HHcCCCccCCCCCCCCHHHHHHHcCCH---HHHHHHHhcCc
Confidence 789999999999999999999888876 78888887554
No 52
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=3e-27 Score=196.01 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=136.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhc-CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEA-DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV 98 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 98 (374)
|.||||.|+..|+.++++.|++. +.++ +.+|. .|+||||+ +..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNR-FGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence 56999999999999999999998 2355 88898 99999999 9999999999999999996 8899999999999999
Q ss_pred hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCcc
Q 041107 99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDL 178 (374)
Q Consensus 99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~ 178 (374)
+|+.+++++|+ +.|.++|.+|.+|+||||+|++.|+.+.++.| ++. ++++..|.+|.||+++|...+..
T Consensus 78 ~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~-~~~~~~~~~g~t~l~~A~~~~~~- 146 (156)
T 1bd8_A 78 TGFLDTLKVLV----EHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-----AAE-SDLHRRDARGLTPLELALQRGAQ- 146 (156)
T ss_dssp TTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH-----HTT-SCTTCCCTTSCCHHHHHHHSCCH-
T ss_pred cCcHHHHHHHH----HcCCCCCCcCCCCCcHHHHHHHhChHHHHHHH-----Hhc-cCCCCcCCCCCCHHHHHHHcCcH-
Confidence 99999999998 78899999999999999999999987777765 566 99999999999999999887776
Q ss_pred HHHHHHHHHh
Q 041107 179 EQEIQELSKA 188 (374)
Q Consensus 179 ~~~i~~~l~~ 188 (374)
++++++.+
T Consensus 147 --~~v~~Ll~ 154 (156)
T 1bd8_A 147 --DLVDILQG 154 (156)
T ss_dssp --HHHHHHHT
T ss_pred --HHHHHHHh
Confidence 56655543
No 53
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=9.1e-28 Score=199.56 Aligned_cols=146 Identities=15% Similarity=0.083 Sum_probs=117.3
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-
Q 041107 13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWN- 91 (374)
Q Consensus 13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t- 91 (374)
.+..+..|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+ .|+.+++++|+++++++ +.+|..|+|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNS-YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcH
Confidence 4567889999999999999999999999999998 89999 9999999985 99999999999999996 889999999
Q ss_pred HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107 92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171 (374)
Q Consensus 92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a 171 (374)
|||+|+.+++.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.++.| ++.|++++..|..|.||.+-+
T Consensus 81 pL~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLH----RAGARLDVRDAWGRLPVDLAEELGHRDVARYL-----RAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH-----SSCC-----------------
T ss_pred HHHHHHHCCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHhCHHHHHHHH-----HHcCCCCCccCcCcCcccccC
Confidence 999999999999999999 77999999999999999999999987777666 899999999999999998744
No 54
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.94 E-value=1.6e-26 Score=209.70 Aligned_cols=179 Identities=21% Similarity=0.151 Sum_probs=156.1
Q ss_pred hHHHHhhCCcccccc-CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107 2 PLLLLDKKKSLTRER-DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE 80 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 80 (374)
++.|++.+. .++.+ +..|+||||+|++.|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++
T Consensus 21 v~~Ll~~g~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 21 VQQLLEGGA-NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKK-NGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp HHHHHHTTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 566776654 45555 788999999999999999999999999998 88998 999999999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhccc----------CCCCCcHHHHHHhhccccccceeeeccc
Q 041107 81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK----------DVKGNTPFHVLAAVCRQSYDARYDIVPW 150 (374)
Q Consensus 81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~----------d~~G~T~LH~A~~~g~~~~~~~l~L~~~ 150 (374)
+ +..|..|+||||+|+.+++.+++++|+ +.+.+++.+ |..|.||||+|+..|+.+.++.|
T Consensus 98 ~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----- 167 (285)
T 1wdy_A 98 V-NECDFYGFTAFMEAAVYGKVKALKFLY----KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL----- 167 (285)
T ss_dssp T-TCBCTTCCBHHHHHHHTTCHHHHHHHH----HTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH-----
T ss_pred C-CccCcccCCHHHHHHHhCCHHHHHHHH----HhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH-----
Confidence 6 888999999999999999999999998 667777776 88999999999999987777766
Q ss_pred ccc-ccccccccCCCCChHHHHHhCCCc-cHHHHHHHHHhcCCCC
Q 041107 151 KIA-KAHFQATNKQNISAEHIYRYGFPD-LEQEIQELSKADGSGQ 193 (374)
Q Consensus 151 l~~-g~~~~~~n~~g~t~l~~a~~~~~~-~~~~i~~~l~~~~~~~ 193 (374)
++. |++++..|..|.||++.|...+.. ...++.+++.+.++..
T Consensus 168 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS
T ss_pred HHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC
Confidence 554 999999999999999998766553 3457888888876654
No 55
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.9e-27 Score=202.10 Aligned_cols=151 Identities=23% Similarity=0.279 Sum_probs=140.6
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++..+.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 21 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 98 (179)
T 3f6q_A 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADI 98 (179)
T ss_dssp HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 678888889999999999999999999999999999999999999 88999 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeecccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATN 161 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n 161 (374)
+..|..|+||||+|+..++.+++++|+ +.|++++.+|.+|+||||+|+..++....+.| ++.|++++..+
T Consensus 99 -~~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L-----~~~g~~~~~~~ 168 (179)
T 3f6q_A 99 -NAVNEHGNVPLHYACFWGQDQVAEDLV----ANGALVSICNKYGEMPVDKAKAPLRELLRERA-----EKMGQNLNRIP 168 (179)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH-----HHTTCCCSCBC
T ss_pred -CccCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCcchhccCCCCcHHHHHHHHHHHHHHHH-----HHhhcCcccCC
Confidence 889999999999999999999999999 78999999999999999999998876666655 88999998877
Q ss_pred CCC
Q 041107 162 KQN 164 (374)
Q Consensus 162 ~~g 164 (374)
.++
T Consensus 169 ~~~ 171 (179)
T 3f6q_A 169 YKD 171 (179)
T ss_dssp CCC
T ss_pred ccc
Confidence 665
No 56
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.94 E-value=1.3e-26 Score=216.90 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=142.4
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++.
T Consensus 74 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 150 (351)
T 3utm_A 74 VQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDL-WQFTPLHEAASKNRVEVCSLLLSHGADP 150 (351)
T ss_dssp HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHH-cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 344554 46778888889999999999999999999999988888 78888 8889999998888888888888876542
Q ss_pred --------------------------------------------------------------------------------
Q 041107 82 -------------------------------------------------------------------------------- 81 (374)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (374)
T Consensus 151 ~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~ 230 (351)
T 3utm_A 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230 (351)
T ss_dssp TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHH
T ss_pred ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHH
Confidence
Q ss_pred ---------cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccc
Q 041107 82 ---------CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKI 152 (374)
Q Consensus 82 ---------~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~ 152 (374)
.+.+|..|+||||+|+.+|+.+++++|+ +.|+++|.+|..|+||||+|+..|+.+.++.| ++
T Consensus 231 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L-----l~ 301 (351)
T 3utm_A 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH----KHGAKMNALDSLGQTALHRAALAGHLQTCRLL-----LS 301 (351)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH-----HH
T ss_pred HHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH-----HH
Confidence 1346788999999999999999999998 78999999999999999999999998777766 88
Q ss_pred cccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 153 AKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 153 ~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
.|++++..|.+|+||+++|. + .+.+++.+.
T Consensus 302 ~gad~~~~~~~g~tal~~a~----~---~~~~~l~~~ 331 (351)
T 3utm_A 302 YGSDPSIISLQGFTAAQMGN----E---AVQQILSES 331 (351)
T ss_dssp TTCCTTCCCTTSCCHHHHSC----H---HHHHHHHHC
T ss_pred cCCCCCCcCCCCCChhhhhh----H---HHHHHHHhc
Confidence 99999999999999999982 2 555666553
No 57
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=9.9e-28 Score=212.85 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=143.0
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHhhcCC----cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADK----SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG 89 (374)
Q Consensus 14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 89 (374)
+.+|.+|+||||+|+..|+.++++.|++.+. ++ +.+|. .|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 78 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRG 78 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence 4678999999999999999999999999765 45 88888 9999999999999999999999999996 8899999
Q ss_pred CcHHHHHHHhccHHHHHhHHhhccc--chhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccC-CCCC
Q 041107 90 WNVLHFAMVSFYARDLKHLVDKYPA--VRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNK-QNIS 166 (374)
Q Consensus 90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~-~g~t 166 (374)
+||||+|+..++.+++++|++.... ....++..|..|+||||+|+..|+...++.| ++.|++++..|. .|.|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t 153 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL-----VSLGADVNAQEPCNGRT 153 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTTCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCC
Confidence 9999999999999999999843211 1234788999999999999999987777666 889999999998 9999
Q ss_pred hHHHHHhCCCccHHHHHHHHHhcCCCCC
Q 041107 167 AEHIYRYGFPDLEQEIQELSKADGSGQY 194 (374)
Q Consensus 167 ~l~~a~~~~~~~~~~i~~~l~~~~~~~~ 194 (374)
|+|+|...+.. +++++|.+.|+...
T Consensus 154 pL~~A~~~~~~---~~v~~Ll~~ga~~~ 178 (236)
T 1ikn_D 154 ALHLAVDLQNP---DLVSLLLKCGADVN 178 (236)
T ss_dssp HHHHHHHTTCH---HHHHHHHTTTCCSC
T ss_pred HHHHHHHcCCH---HHHHHHHHcCCCCC
Confidence 99999888776 88888888776543
No 58
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=201.99 Aligned_cols=166 Identities=16% Similarity=0.021 Sum_probs=125.4
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH
Q 041107 13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNV 92 (374)
Q Consensus 13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 92 (374)
++..|..|.||||.|++.|+.+++++|++.|.++ +.++. .|.||||+|+..|+.+++++|++.+++.....+..|+||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDK-ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence 3456777888888888888888888888888777 77777 888888888888888888888888887655556668888
Q ss_pred HHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHH
Q 041107 93 LHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYR 172 (374)
Q Consensus 93 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~ 172 (374)
||+|+..++.+++++|+ +.|.+++.+|..|.||||+|+..|+...++.| ++.|++++..|..|.||+++|.
T Consensus 80 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~~~~~~~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLM----KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL-----IAKGQDVDMMDQNGMTPLMWAA 150 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCHHHHHHHH-----HhcCCCccccCCCCCcHHHHHH
Confidence 88888888888888887 66777888888888888888888776666555 6778888888888888888876
Q ss_pred h-CCCccHHHHHHHHHhcCCC
Q 041107 173 Y-GFPDLEQEIQELSKADGSG 192 (374)
Q Consensus 173 ~-~~~~~~~~i~~~l~~~~~~ 192 (374)
. ++.. .+.+++.+.+..
T Consensus 151 ~~~~~~---~~~~~L~~~~~~ 168 (240)
T 3eu9_A 151 YRTHSV---DPTRLLLTFNVS 168 (240)
T ss_dssp HHCCSS---TTHHHHHHTTCC
T ss_pred HhCChH---HHHHHHHhcCCC
Confidence 3 3333 344445554433
No 59
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=3.5e-27 Score=215.77 Aligned_cols=142 Identities=13% Similarity=-0.057 Sum_probs=123.8
Q ss_pred HHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhc
Q 041107 33 CFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKY 112 (374)
Q Consensus 33 ~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 112 (374)
.++.++|.+. ++ +.+|. .|+||||+|+..|+.+++++|++.++++ +.. +|+||||+|+.+|+.+++++|+
T Consensus 13 ~~v~~lL~~~--~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll--- 82 (285)
T 3kea_A 13 KQLKSFLSSK--DT-FKADV-HGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILL--- 82 (285)
T ss_dssp HHHHHHHHST--TT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHH---
T ss_pred HHHHHHHHhC--CC-CccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHH---
Confidence 4555555554 44 77898 9999999999999999999999999886 444 5999999999999999999999
Q ss_pred ccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCC-CChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107 113 PAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQN-ISAEHIYRYGFPDLEQEIQELSKADGS 191 (374)
Q Consensus 113 ~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g-~t~l~~a~~~~~~~~~~i~~~l~~~~~ 191 (374)
+.|+++|.+|.+|+||||+|+..|+.+.++.| ++.|++++..|..| .||+|+|...+.. ++++++.+.++
T Consensus 83 -~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~L-----l~~ga~~~~~~~~g~~t~L~~A~~~~~~---~~v~~Ll~~g~ 153 (285)
T 3kea_A 83 -FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF-----VKKNWRLMFYGKTGWKTSFYHAVMLNDV---SIVSYFLSEIP 153 (285)
T ss_dssp -HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHCGGGGGCSSSGGGSHHHHHHHTTCH---HHHHHHHTTSC
T ss_pred -HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HhcCCCCCccCCCCCCCHHHHHHHcCCH---HHHHHHHhCCC
Confidence 77999999999999999999999987777766 78899999999999 8999999888776 78888888776
Q ss_pred CC
Q 041107 192 GQ 193 (374)
Q Consensus 192 ~~ 193 (374)
..
T Consensus 154 ~~ 155 (285)
T 3kea_A 154 ST 155 (285)
T ss_dssp TT
T ss_pred cc
Confidence 55
No 60
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.4e-27 Score=191.46 Aligned_cols=134 Identities=13% Similarity=0.007 Sum_probs=123.9
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCC-
Q 041107 10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDR- 88 (374)
Q Consensus 10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~- 88 (374)
+..++.+|..|.||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+. |+.+++++|+++++++ +.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNR-FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence 4568899999999999999999999999999999998 89998 99999999999 9999999999999996 888988
Q ss_pred CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107 89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
|+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.| ++.|+|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L-----l~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLH----RAGARLDVCDAWGRLPVDLAEEQGHRDIARYL-----HAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHH----HTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHH-----HHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCC
Confidence 999999999999999999999 78899999999999999999999987777655 666664
No 61
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.94 E-value=5e-27 Score=221.86 Aligned_cols=166 Identities=19% Similarity=0.046 Sum_probs=111.7
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCC
Q 041107 10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRG 89 (374)
Q Consensus 10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 89 (374)
.-..+..|.+|+||||+||..|+.++|++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++++++.. +.+|
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g 84 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHS---LWHG 84 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTT
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCC
Confidence 3456778899999999999999999999999999999 99999 99999999999999999999999998542 2356
Q ss_pred CcHHHHHHHhccHHHHHhHHhhcccchhhhcc-----------------cCCCCCcHHHHHHhhc--cccccceeeeccc
Q 041107 90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK-----------------KDVKGNTPFHVLAAVC--RQSYDARYDIVPW 150 (374)
Q Consensus 90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~-----------------~d~~G~T~LH~A~~~g--~~~~~~~l~L~~~ 150 (374)
+||||+|+.+|+.+++++|++.....+.+++. +|.+|+||||+|+..| +.+.++.|
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L----- 159 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL----- 159 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH-----
Confidence 66666666666666666665432222334433 5555666666666655 44444433
Q ss_pred cccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107 151 KIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 151 l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
++.|++++..|..|.||+++|...+.. +++++|.+
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~ 194 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRAMEFRNR---EALDLMMD 194 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHH
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCH---HHHHHHHh
Confidence 455566666666666666655555444 44444444
No 62
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=3.1e-26 Score=210.12 Aligned_cols=163 Identities=17% Similarity=0.107 Sum_probs=141.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96 (374)
Q Consensus 17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 96 (374)
+..|.||||.||..|+.++++.|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+++ +..|..|+||||+|
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A 113 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANV-DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA 113 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 446889999999999999999999999998 88999 9999999999999999999999999996 88899999999999
Q ss_pred HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccc------------------
Q 041107 97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQ------------------ 158 (374)
Q Consensus 97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~------------------ 158 (374)
+.+|+.+++++|+ +.|.+++.+|.+|+||||+|+..++...+..+ + ...+.+++
T Consensus 114 ~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l-l---~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (299)
T 1s70_B 114 ASCGYLDIAEYLI----SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE-V---NRQGVDIEAARKEEERIMLRDARQWL 185 (299)
T ss_dssp HHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH-H---HHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHH----hCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH-H---hhcCCCchhhhhhhhhHHHHHHHHHH
Confidence 9999999999999 77899999999999999999988776555544 3 33444433
Q ss_pred --------cccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 159 --------ATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 159 --------~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
..+..|.||+|+|...+.. +++++|.+.++..
T Consensus 186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~g~d~ 225 (299)
T 1s70_B 186 NSGHINDVRHAKSGGTALHVAAAKGYT---EVLKLLIQARYDV 225 (299)
T ss_dssp HHTCCCCCCCTTTCCCHHHHHHHHTCH---HHHHHHHTTTCCT
T ss_pred hccCcchhhhcCCCCCHHHHHHHCCcH---HHHHHHHHcCCCC
Confidence 3567899999999887776 7888888766544
No 63
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=4.6e-26 Score=196.73 Aligned_cols=166 Identities=14% Similarity=0.013 Sum_probs=146.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhcCC-cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 041107 17 DRHGWTPLHYAVYLDRCFISKCLLEADK-SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHF 95 (374)
Q Consensus 17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 95 (374)
+..+.||||.|+..|+.+.++.|++.+. ++ +.+|. .|+||||+|+..|+.+++++|+++++++ +..|..|+||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence 4578999999999999999999999877 65 88998 9999999999999999999999999996 8899999999999
Q ss_pred HHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc-cccccccCCCCChHHHHHhC
Q 041107 96 AMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK-AHFQATNKQNISAEHIYRYG 174 (374)
Q Consensus 96 A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g-~~~~~~n~~g~t~l~~a~~~ 174 (374)
|+..++.+++++|++ ..+.+++.+|.+|+||||+|+..|+.+.++.| ++.| ++++..|..|+||+|+|...
T Consensus 79 A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----l~~g~~~~~~~~~~g~t~L~~A~~~ 150 (201)
T 3hra_A 79 AGAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLL-----LEDGREDIDFQNDFGYTALIEAVGL 150 (201)
T ss_dssp HHHTTCHHHHHHHHH---HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH-----HHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred HHHcCCHHHHHHHHh---ccCcccccccCCCCcHHHHHHHcCCHHHHHHH-----HHcCCCCcCCCCCCCCCHHHHHHHh
Confidence 999999999999984 34568999999999999999999987777766 6777 99999999999999999876
Q ss_pred CCc--cHHHHHHHHHhcCCCC
Q 041107 175 FPD--LEQEIQELSKADGSGQ 193 (374)
Q Consensus 175 ~~~--~~~~i~~~l~~~~~~~ 193 (374)
+.. ...++++++.+.++..
T Consensus 151 ~~~~~~~~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 151 REGNQLYQDIVKLLMENGADQ 171 (201)
T ss_dssp SCCSHHHHHHHHHHHHTTCCT
T ss_pred ccchhhHHHHHHHHHHCCCCC
Confidence 652 2357888888877654
No 64
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=9.3e-27 Score=207.40 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=100.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96 (374)
Q Consensus 17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 96 (374)
+..|.||||.|++.|+.+.++.|+++|+++ +. +. .|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NP-LPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCc-cc-Cc-hhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 457999999999999999999999999998 54 35 8999999999999999999999999986 88899999999999
Q ss_pred HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC-ChHHHH
Q 041107 97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI-SAEHIY 171 (374)
Q Consensus 97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~-t~l~~a 171 (374)
+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.++.| ++.|++++..|..|. ||+|+|
T Consensus 78 ~~~g~~~~v~~Ll----~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 78 VCAGHTEIVKFLV----QFGVNVNAADSDGWTPLHCAASCNNVQVCKFL-----VESGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp HHHTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCSSSCCCHHHHC
T ss_pred HHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCcceecCCCCcchHHHH
Confidence 9999999999999 77899999999999999999999987777666 889999999998887 999998
No 65
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=5.5e-26 Score=189.46 Aligned_cols=141 Identities=19% Similarity=0.173 Sum_probs=126.2
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++ .+..++.+|..|+||||+|+. |+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 21 v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 96 (162)
T 1ihb_A 21 LTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDR-TGFAVIHDAARAGFLDTLQTLLEFQADV 96 (162)
T ss_dssp HHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 455565 567789999999999999999 9999999999999999 88999 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhh-hcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNL-IFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~-~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
+.+|..|+||||+|+.+++.+++++|+ +.+.+ ++.+|.+|+||||+|+..|+.+.++.| ++.|+|
T Consensus 97 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~GAd 162 (162)
T 1ihb_A 97 -NIEDNEGNLPLHLAAKEGHLRVVEFLV----KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM-----QANGAG 162 (162)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHTC--
T ss_pred -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH-----HHhCCC
Confidence 889999999999999999999999998 66765 699999999999999999987777665 677764
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.93 E-value=1.9e-26 Score=207.14 Aligned_cols=163 Identities=14% Similarity=-0.004 Sum_probs=137.3
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHhhcCCccccc----ccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccc----
Q 041107 19 HGWTPLHYAVYLDRCF----ISKCLLEADKSAALI----SDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCE---- 83 (374)
Q Consensus 19 ~g~TpLh~Aa~~g~~~----~v~~Ll~~~~~~~~~----~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~---- 83 (374)
.|+||||.|++.|+.+ ++++|++++.++ +. +|. .|+||||+|+.. |+.+++++|++.+++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i-~~~~~~~d~-~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYL-TDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCT-TSGGGSBTT-TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCc-ccccccCCC-CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 4889999999999997 667777799998 76 788 999999999999 999999999999876521
Q ss_pred ------cccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCC-------------CCcHHHHHHhhccccccce
Q 041107 84 ------VVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVK-------------GNTPFHVLAAVCRQSYDAR 144 (374)
Q Consensus 84 ------~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~-------------G~T~LH~A~~~g~~~~~~~ 144 (374)
..|..|+||||+|+.+|+.+++++|+ +.|+++|.+|.. |+||||+|+..|+.+.++.
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 154 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV----ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHH----HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 23478999999999999999999999 778999999987 9999999999998777776
Q ss_pred eeeccccc---cccccccccCCCCChHHHHHh--CCCcc----HHHHHHHHHhcCCC
Q 041107 145 YDIVPWKI---AKAHFQATNKQNISAEHIYRY--GFPDL----EQEIQELSKADGSG 192 (374)
Q Consensus 145 l~L~~~l~---~g~~~~~~n~~g~t~l~~a~~--~~~~~----~~~i~~~l~~~~~~ 192 (374)
| ++ .|++++.+|.+|+||+|+|.. .+... ..+++++|.+.++.
T Consensus 155 L-----l~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~ 206 (256)
T 2etb_A 155 L-----LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206 (256)
T ss_dssp H-----HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence 6 67 899999999999999999986 33331 11267777765543
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=8.3e-26 Score=189.54 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=126.0
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|..|+||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++++++
T Consensus 19 v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 95 (167)
T 3v31_A 19 LATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGK-GRESALSLACSKGYTDIVKMLLDCGVDV 95 (167)
T ss_dssp HHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred HHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4566666 4679999999999999999999999999999999998 88998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+..|..|+||||+|+..++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.|
T Consensus 96 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (167)
T 3v31_A 96 -NEYDWNGGTPLLYAVHGNHVKCVKMLL----ESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154 (167)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred -CcCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 888999999999999999999999999 78899999999999999999999987776655
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1.8e-25 Score=188.13 Aligned_cols=136 Identities=23% Similarity=0.270 Sum_probs=125.1
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 30 v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 106 (169)
T 2y1l_E 30 VRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADV 106 (169)
T ss_dssp HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 4555554 6778999999999999999999999999999999998 88998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+..|..|+||||+|+.+++.+++++|+ +.|.+++.+|.+|+||||+|++.|+.+.++.|
T Consensus 107 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 107 -NANDMEGHTPLHLAAMFGHLEIVEVLL----KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 888999999999999999999999999 77899999999999999999999987666544
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.1e-26 Score=191.74 Aligned_cols=136 Identities=21% Similarity=0.199 Sum_probs=125.7
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++..+...+..|..|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 24 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 101 (165)
T 3twr_A 24 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVV 101 (165)
T ss_dssp HHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCC
Confidence 567888888889999999999999999999999999999999999 99999 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+..|..|+||||+|+.+++.+++++|+ +.|++++.+|.+|+||||+|++ |+.++++.|
T Consensus 102 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 102 -NVADLWKFTPLHEAAAKGKYEICKLLL----QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred -CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 889999999999999999999999999 7789999999999999999877 666555544
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=1.3e-25 Score=185.80 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=121.5
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++.+.. .+ .|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 18 v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 93 (153)
T 1awc_B 18 VRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTK-VDRTPLHMAASEGHANIVEVLLKHGADV 93 (153)
T ss_dssp HHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCT-TCCCHHHHHHHHTCHHHHHHHHTTTCCT
T ss_pred HHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcChHHHHHHHHHcCCCC
Confidence 5667777654 33 5889999999999999999999999999998 88998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA 143 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~ 143 (374)
+.+|..|+||||+|+.+++.+++++|+ +.|++++.+|.+|+||||+|+..|+.+.++
T Consensus 94 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 150 (153)
T 1awc_B 94 -NAKDMLKMTALHWATEHNHQEVVELLI----KYGADVHTQSKFCKTAFDISIDNGNEDLAE 150 (153)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 888999999999999999999999999 779999999999999999999998865554
No 71
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=1.1e-25 Score=186.51 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=124.8
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++..+..++.+|..|+||||+ +..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+++
T Consensus 18 v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 94 (156)
T 1bd8_A 18 VRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDT-SGTSPVHDAARTGFLDTLKVLVEHGADV 94 (156)
T ss_dssp HHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred HHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 5677888667899999999999999 9999999999999999999 99999 9999999999999999999999999986
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+.+|..|+||||+|+.+|+.+++++|+ +. .+++.+|.+|+||||+|+..|+.+.++.|
T Consensus 95 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 95 -NVPDGTGALPIHLAVQEGHTAVVSFLA----AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -CCCCTTSCCHHHHHHHHTCHHHHHHHH----TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -CCcCCCCCcHHHHHHHhChHHHHHHHH----hc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 889999999999999999999999998 55 88999999999999999999987666544
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.9e-27 Score=206.30 Aligned_cols=156 Identities=18% Similarity=0.102 Sum_probs=125.5
Q ss_pred HHHHhhCC--ccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 041107 3 LLLLDKKK--SLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPE 80 (374)
Q Consensus 3 ~~lL~~~~--~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 80 (374)
++||++.. ...+..+.+|.||||+|+..|+.+++++|++.|+++ +.+|. .|+||||+|+..|+.+++++|++.|++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNE-EGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 45666543 334555667889999999999999999999999998 88998 999999999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHH--Hhhccccccceeeecccccccccc
Q 041107 81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVL--AAVCRQSYDARYDIVPWKIAKAHF 157 (374)
Q Consensus 81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A--~~~g~~~~~~~l~L~~~l~~g~~~ 157 (374)
+ +.+|..|+||||+|+.+|+.+++++|+ +.|++++.+| .+|+||||+| +..|+.+.++.| ++.|+++
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L-----l~~ga~~ 149 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALV----QHGAAIFATTLSDGATAFEKCDPYREGYADCATYL-----ADVEQSM 149 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHH-----HHHHHHT
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHH-----HHcCCCc
Confidence 6 888999999999999999999999998 7889999987 6999999999 777765555544 5666666
Q ss_pred ccccCCCCChHHH
Q 041107 158 QATNKQNISAEHI 170 (374)
Q Consensus 158 ~~~n~~g~t~l~~ 170 (374)
+..|..|.||++.
T Consensus 150 ~~~~~~~~~~l~~ 162 (229)
T 2vge_A 150 GLMNSGAVYALWD 162 (229)
T ss_dssp TTSGGGEEEESSC
T ss_pred ccccCCchHHHHH
Confidence 6666666565554
No 73
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.92 E-value=2.9e-26 Score=207.93 Aligned_cols=173 Identities=14% Similarity=0.017 Sum_probs=136.8
Q ss_pred CccccccCCCCCcHHHHHHHcCCHHHHHHHhh----cCCcccc---cccCCCCchHHHHHHHc---CCHHHHHHHHHhCC
Q 041107 10 KSLTRERDRHGWTPLHYAVYLDRCFISKCLLE----ADKSAAL---ISDEDRKMTALHLAAGR---GDVWMVQEIIDHCP 79 (374)
Q Consensus 10 ~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~----~~~~~~~---~~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~ 79 (374)
++..+..|..|+||||+|++.|+.++|+.|++ .+.++.. .+|. .|+||||+|+.. |+.+++++|++.++
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE-TGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT-TCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc-CCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 34567789999999999999999999998887 4444411 3577 999999999987 99999999999986
Q ss_pred Ccc----------ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCC--------------CCCcHHHHHHh
Q 041107 80 ECC----------EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDV--------------KGNTPFHVLAA 135 (374)
Q Consensus 80 ~~~----------~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~--------------~G~T~LH~A~~ 135 (374)
+.. ...|..|+||||+|+.+|+.+++++|+ +.|+++|.+|. +|+||||+|+.
T Consensus 82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 157 (273)
T 2pnn_A 82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV----ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC 157 (273)
T ss_dssp HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHH----HCCCCcCccccccccccccccccccCCCCHHHHHHH
Confidence 521 225679999999999999999999999 77899999987 89999999999
Q ss_pred hccccccceeeeccccc---cccccccccCCCCChHHHHHhCCCcc------HHHHHHHHHhcCCC
Q 041107 136 VCRQSYDARYDIVPWKI---AKAHFQATNKQNISAEHIYRYGFPDL------EQEIQELSKADGSG 192 (374)
Q Consensus 136 ~g~~~~~~~l~L~~~l~---~g~~~~~~n~~g~t~l~~a~~~~~~~------~~~i~~~l~~~~~~ 192 (374)
.|+.+.++.| ++ .|++++.+|.+|+||+|+|...+... ..+++++|.+.++.
T Consensus 158 ~g~~~~v~~L-----l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~ 218 (273)
T 2pnn_A 158 TNQLAIVKFL-----LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218 (273)
T ss_dssp TTCHHHHHHH-----HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-----HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh
Confidence 9987777766 67 89999999999999999997755421 13566666665443
No 74
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.92 E-value=2.2e-25 Score=191.40 Aligned_cols=136 Identities=21% Similarity=0.088 Sum_probs=125.6
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +..++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 51 v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 127 (192)
T 2rfm_A 51 IDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGANV 127 (192)
T ss_dssp HHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4566665 5678899999999999999999999999999999998 89998 9999999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+.+|..|+||||+|+..++.+++++|+ +.|++++.+|.+|+||||+|+..|+.+.++.|
T Consensus 128 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 128 -NDRNLEGETPLIVASKYGRSEIVKKLL----ELGADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp -SCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 889999999999999999999999999 77999999999999999999999987766654
No 75
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=7.8e-26 Score=193.66 Aligned_cols=155 Identities=9% Similarity=-0.060 Sum_probs=129.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCccccccc-CCCCchHHHHHHHcCCH----HHHHHHHHhCCCccccccCCCCcHHH
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAALISD-EDRKMTALHLAAGRGDV----WMVQEIIDHCPECCEVVDDRGWNVLH 94 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh 94 (374)
++++||.|++.|+.+.++.+++.+.+. ++ . .|+||||+|+.+|+. +++++|+++|+++ +.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~-~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED---KESV-LKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC---HHHH-HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc---cccc-CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 678999999999999999999877543 44 6 899999999999975 5999999999997 889999999999
Q ss_pred HHHHhcc------HHHHHhHHhhcccchhhhcccCCCCC-cHHHHHHhhccc-----cccceeeeccccc-ccccccccc
Q 041107 95 FAMVSFY------ARDLKHLVDKYPAVRNLIFKKDVKGN-TPFHVLAAVCRQ-----SYDARYDIVPWKI-AKAHFQATN 161 (374)
Q Consensus 95 ~A~~~~~------~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~LH~A~~~g~~-----~~~~~l~L~~~l~-~g~~~~~~n 161 (374)
+|+..++ .+++++|+ +.|+++|.+|.+|+ ||||+|+..+.. .+++.| ++ .|++++.+|
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll----~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~L-----l~~~gad~~~~d 151 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFL----EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLI-----FSQSGLQLLIKD 151 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHH----HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHH-----HTSTTCCTTCCC
T ss_pred HHHHcCCcchhhHHHHHHHHH----HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHH-----HHhcCCCCcccC
Confidence 9999876 57899998 88999999999999 999999985432 233344 67 999999999
Q ss_pred CCCCChHHHHHhCCCc-cHHHHHHHHHh
Q 041107 162 KQNISAEHIYRYGFPD-LEQEIQELSKA 188 (374)
Q Consensus 162 ~~g~t~l~~a~~~~~~-~~~~i~~~l~~ 188 (374)
+.|+||+|+|.+.+.. .++.+.++.++
T Consensus 152 ~~G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 152 KWGLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp TTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999887665 34444444444
No 76
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=7.6e-25 Score=174.15 Aligned_cols=126 Identities=29% Similarity=0.286 Sum_probs=117.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107 19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV 98 (374)
Q Consensus 19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 98 (374)
+|+||||+|++.|+.+++++|++++.++ +.++. .|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 5999999999999999999999999998 88898 9999999999999999999999999986 8889999999999999
Q ss_pred hccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107 99 SFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 99 ~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
.++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.| ++.|+|
T Consensus 78 ~~~~~~~~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L-----l~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-----LEAGAY 126 (126)
T ss_dssp TTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHTCC
T ss_pred cChHHHHHHHH----HcCCCCcccCCCCCCHHHHHHHcCcHHHHHHH-----HHcCCC
Confidence 99999999998 77899999999999999999999987777655 666764
No 77
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.92 E-value=1.6e-24 Score=202.55 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=140.3
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHhh-cCCcccccccCCCCchHHHHHHHcCC----HHHHHHHHHhCCCccccccCC
Q 041107 14 RERDRHGWTPLHYAVYLDRCFISKCLLE-ADKSAALISDEDRKMTALHLAAGRGD----VWMVQEIIDHCPECCEVVDDR 88 (374)
Q Consensus 14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~ 88 (374)
+..+..|.||||+|++.|+.++|++|++ .|+++ +.+|. .|+||+|.++..++ .+++++|+++|+++ +.+|.+
T Consensus 162 ~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~ 238 (337)
T 4g8k_A 162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER 238 (337)
T ss_dssp --CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGG
T ss_pred ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCC
Confidence 3456679999999999999999999996 58888 99999 99999998876543 46889999999996 889999
Q ss_pred CCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107 89 GWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE 168 (374)
Q Consensus 89 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l 168 (374)
|+||||+|+..++.++++.|++ ..+.++|.+|.+|+||||+|++.|+.++++.| ++.|+++|.. +|+
T Consensus 239 g~t~L~~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L-----l~~GAd~n~~-----~~L 305 (337)
T 4g8k_A 239 GKTPLILAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLAVELKLKKIAELL-----CKRGASTDCG-----DLV 305 (337)
T ss_dssp GCCHHHHHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH-----HTTSCSSTTC-----CHH
T ss_pred CCCHHHHHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCC-----CHH
Confidence 9999999999999999999983 35789999999999999999999998877766 8899988754 699
Q ss_pred HHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 169 HIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 169 ~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
++|...+.. +++++|.+.|+..
T Consensus 306 ~~A~~~~~~---~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 306 MTARRNYDH---SLVKVLLSHGAKE 327 (337)
T ss_dssp HHHHHTTCH---HHHHHHHHTTCCC
T ss_pred HHHHHcCCH---HHHHHHHHCcCCC
Confidence 999888776 8899999988865
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=3e-26 Score=202.86 Aligned_cols=160 Identities=14% Similarity=0.031 Sum_probs=140.1
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.|+++
T Consensus 37 v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 113 (229)
T 2vge_A 37 VQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDS-HGWTPLHCAASCNDTVICMALVQHGAAI 113 (229)
T ss_dssp HHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 4566665 5678999999999999999999999999999999999 99999 9999999999999999999999999997
Q ss_pred cccc-cCCCCcHHHHH--HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc--
Q 041107 82 CEVV-DDRGWNVLHFA--MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH-- 156 (374)
Q Consensus 82 ~~~~-d~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~-- 156 (374)
+.. |..|+||||+| +..++.+++++|+ +.|++++.+|..|.||||.++... ... + + ++.|++
T Consensus 114 -~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~~l~~~~~~~---~~~-~-l---l~~ga~~~ 180 (229)
T 2vge_A 114 -FATTLSDGATAFEKCDPYREGYADCATYLA----DVEQSMGLMNSGAVYALWDYSAEF---GDE-L-S---FREGESVT 180 (229)
T ss_dssp -TCCCSSTTCCTGGGCCTTSTTHHHHHHHHH----HHHHHTTTSGGGEEEESSCBCCSS---TTB-C-C---BCTTCEEE
T ss_pred -ccccCCCCCCHHHHHHHHhcChHHHHHHHH----HcCCCcccccCCchHHHHHHhhcc---ccc-c-C---cccccccc
Confidence 555 47999999999 9999999999999 889999999999999999665532 233 3 4 677877
Q ss_pred cccccCCCCChHHHHHhCCCc
Q 041107 157 FQATNKQNISAEHIYRYGFPD 177 (374)
Q Consensus 157 ~~~~n~~g~t~l~~a~~~~~~ 177 (374)
++.+|.+|+||+++|...+..
T Consensus 181 ~~~~d~~G~TpL~~A~~~g~~ 201 (229)
T 2vge_A 181 VLRRDGPEETDWWWAALHGQE 201 (229)
T ss_dssp EEESSCTTCSSEEEEEETTEE
T ss_pred ccccCCCcccHHHHHHHcCCc
Confidence 778999999999999776654
No 79
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=4.6e-25 Score=178.81 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=113.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH 94 (374)
Q Consensus 15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 94 (374)
.....|.||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|++.++++ +..|..|+||||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~ 85 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDE-YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH 85 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence 34567899999999999999999999999998 88998 9999999999999999999999999996 888999999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
+|+.+++.+++++|+ +.|.+++.+|.+|+||||+|+..|+.+.++.|
T Consensus 86 ~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 86 LAAFIGHLEIAEVLL----KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp HHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHH----HcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 999999999999999 77899999999999999999999987666544
No 80
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=3.3e-25 Score=179.78 Aligned_cols=122 Identities=19% Similarity=0.107 Sum_probs=114.0
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH 94 (374)
Q Consensus 15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 94 (374)
.+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDH-AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 57889999999999999999999999999999 89999 9999999999999999999999999986 888999999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccc
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDA 143 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~ 143 (374)
+|+.+++.+++++|+ +.|++++.+|.+|+||||+|+..+..+...
T Consensus 82 ~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLL----SYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred HHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 999999999999998 779999999999999999999887654443
No 81
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.91 E-value=8.1e-25 Score=196.78 Aligned_cols=135 Identities=17% Similarity=0.075 Sum_probs=120.2
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccccccc--------------CCCCchHHHHHHHcCCHHHHHHHHH-
Q 041107 12 LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISD--------------EDRKMTALHLAAGRGDVWMVQEIID- 76 (374)
Q Consensus 12 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~~g~tpLh~Aa~~g~~~~v~~Ll~- 76 (374)
..+..|..|+||||+|+..|+.++|++|+++|+++ +.++ . .|+||||+|+..|+.+++++|++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFY-FGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCC-SCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCccccccccc-CCCCHHHHHHHcCCHHHHHHHHhc
Confidence 34556668999999999999999999999999999 7777 5 89999999999999999999999
Q ss_pred --hCCCccccccCCCCcHHHHHHHhcc---------HHHHHhHHhhcccchhhh-------cccCCCCCcHHHHHHhhcc
Q 041107 77 --HCPECCEVVDDRGWNVLHFAMVSFY---------ARDLKHLVDKYPAVRNLI-------FKKDVKGNTPFHVLAAVCR 138 (374)
Q Consensus 77 --~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~~Ll~~~~~~~~~~-------n~~d~~G~T~LH~A~~~g~ 138 (374)
.++++ +.+|..|+||||+|+..++ .+++++|+ +.|+++ +.+|.+|+||||+|++.|+
T Consensus 163 ~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 163 GHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLL----IKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp SSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHH----HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHH----HhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 88886 8899999999999998776 68999998 788888 7899999999999999999
Q ss_pred ccccceeeeccccccccccc
Q 041107 139 QSYDARYDIVPWKIAKAHFQ 158 (374)
Q Consensus 139 ~~~~~~l~L~~~l~~g~~~~ 158 (374)
.++++.| +++|.+..
T Consensus 238 ~~~v~~L-----l~~g~~~~ 252 (260)
T 3jxi_A 238 IGIFQHI-----IRREIADA 252 (260)
T ss_dssp HHHHHHH-----HHHHHHHH
T ss_pred HHHHHHH-----HHhCCCcc
Confidence 8877766 67776654
No 82
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=4e-25 Score=196.79 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=128.4
Q ss_pred HHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 041107 3 LLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC 82 (374)
Q Consensus 3 ~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~ 82 (374)
+.|++ .+..++. +..|.||||.|+..|+.++++.|++.++++ +.+|. .|+||||+|+..|+.+++++|+++++++
T Consensus 22 ~~ll~-~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~- 96 (239)
T 1ycs_B 22 SERIA-HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPND-EGITALHNAVCAGHTEIVKFLVQFGVNV- 96 (239)
T ss_dssp -----------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCT-
T ss_pred HHHhc-cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence 34444 4455554 478999999999999999999999999998 99999 9999999999999999999999999996
Q ss_pred ccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC-cHHHHH--Hhhccccccceeeecccccccccccc
Q 041107 83 EVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN-TPFHVL--AAVCRQSYDARYDIVPWKIAKAHFQA 159 (374)
Q Consensus 83 ~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~-T~LH~A--~~~g~~~~~~~l~L~~~l~~g~~~~~ 159 (374)
+.+|..|+||||+|+.+|+.+++++|+ +.|++++.+|..|. ||||+| +..|+.+.++.| ++.|++++.
T Consensus 97 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L-----l~~~a~~~~ 167 (239)
T 1ycs_B 97 NAADSDGWTPLHCAASCNNVQVCKFLV----ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL-----YGVQEKMGI 167 (239)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH-----HHHHHHTTT
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCcceecCCCCcchHHHHHHhhhccHHHHHHH-----HHhhhcccc
Confidence 889999999999999999999999999 78999999998887 999999 777777766655 788888877
Q ss_pred c---------cCCCCChHHHHHhCC
Q 041107 160 T---------NKQNISAEHIYRYGF 175 (374)
Q Consensus 160 ~---------n~~g~t~l~~a~~~~ 175 (374)
. +..+.++.+++...+
T Consensus 168 ~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 168 MNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp TGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred cccceEEEEeccCCCCCCcccccCC
Confidence 6 455677777664433
No 83
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=4.8e-25 Score=193.83 Aligned_cols=141 Identities=18% Similarity=0.078 Sum_probs=115.7
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCc
Q 041107 13 TRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDH-CPECCEVVDDRGWN 91 (374)
Q Consensus 13 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t 91 (374)
++.+|.+|.||||+||..|+.++++.|++.|+++ +.+|. .|+||||+|+..|+.+++++|++. ++++ +.+|..|+|
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t 142 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT 142 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence 4456778999999999999999999999999998 89999 999999999999999999999999 7775 889999999
Q ss_pred HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCC
Q 041107 92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNI 165 (374)
Q Consensus 92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~ 165 (374)
|||+|+.+|+.+++++|+ +.|++++.+|.+|+||||+|+..|+.++++.+ +..|++.+..|.+|.
T Consensus 143 pL~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l-----~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLL----AKGARTDLRNIEKKLAFDMATNAACASLLKKK-----QGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHHHHHTCHHHHHHHH----HHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCCccccCCCCCHHHHhcchhHHHHHHHH-----hccchhhhccchhhh
Confidence 999999999999999999 77999999999999999999999887776655 788888888877654
No 84
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=195.81 Aligned_cols=137 Identities=21% Similarity=0.171 Sum_probs=126.5
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHH-----HcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAV-----YLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIID 76 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~ 76 (374)
++.|++.+...++.+|..|+||||+|+ ..++.++++.|++.|... +..+. .|+||||+|+..|+.+++++|++
T Consensus 127 v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~ 204 (276)
T 4hbd_A 127 VQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQ-AGQTALMLAVSHGRVDVVKALLA 204 (276)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTT-TCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCC-CCCCHHHHHHHcCCHHHHHHHHh
Confidence 567788777689999999999999999 668899999999999877 77888 99999999999999999999999
Q ss_pred hCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhccc-chhhhcccCCCCCcHHHHHHhhcccccccee
Q 041107 77 HCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPA-VRNLIFKKDVKGNTPFHVLAAVCRQSYDARY 145 (374)
Q Consensus 77 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l 145 (374)
.|+++ +.+|.+|+||||+|+.+|+.+++++|+ + .|+++|.+|.+|+||||+|++.|+.++++.|
T Consensus 205 ~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll----~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L 269 (276)
T 4hbd_A 205 CEADV-NVQDDDGSTALMCACEHGHKEIAGLLL----AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269 (276)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----TSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHH----hcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99996 889999999999999999999999998 5 7899999999999999999999987777655
No 85
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=3.2e-24 Score=170.61 Aligned_cols=114 Identities=15% Similarity=0.016 Sum_probs=105.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 041107 17 DRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFA 96 (374)
Q Consensus 17 d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 96 (374)
+..|.||||+|+..|+.++++.|++.+.++ +.+|. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLE-GGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 567899999999999999999999999998 89999 9999999999999999999999999996 88999999999999
Q ss_pred HHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107 97 MVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137 (374)
Q Consensus 97 ~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g 137 (374)
+..++.+++++|+ +.|++++.+|.+|+||||+|+..+
T Consensus 81 ~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 81 VYEGHVSCVKLLL----SKGADKTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHCCCHH
T ss_pred HHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHhCCHH
Confidence 9999999999999 778999999999999999996543
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=3.6e-25 Score=189.53 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=119.9
Q ss_pred HHHHhhCCccccccC-CCCCcHHHHHHHcCCH----HHHHHHhhcCCcccccccCCCCchHHHHHHHcCC------HHHH
Q 041107 3 LLLLDKKKSLTRERD-RHGWTPLHYAVYLDRC----FISKCLLEADKSAALISDEDRKMTALHLAAGRGD------VWMV 71 (374)
Q Consensus 3 ~~lL~~~~~~~~~~d-~~g~TpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~------~~~v 71 (374)
+.++... ++.+| ..|+||||+|+..|+. +++++|+++|+++ +.+|. .|+||||+|+..|+ .+++
T Consensus 23 ~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~-~g~TpLh~a~~~~~~~~~~~~~iv 97 (186)
T 3t8k_A 23 LELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTK-EGTTLFFPLFQGGGNDITGTTELC 97 (186)
T ss_dssp HHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCT-TCCCTHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCC-CCCcHHHHHHHcCCcchhhHHHHH
Confidence 3444443 34455 6799999999999985 5999999999999 99998 99999999999987 6889
Q ss_pred HHHHHhCCCccccccCCCC-cHHHHHHHh-----ccHHHHHhHHhhccc-chhhhcccCCCCCcHHHHHHhhccccccce
Q 041107 72 QEIIDHCPECCEVVDDRGW-NVLHFAMVS-----FYARDLKHLVDKYPA-VRNLIFKKDVKGNTPFHVLAAVCRQSYDAR 144 (374)
Q Consensus 72 ~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~-----~~~~~~~~Ll~~~~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~ 144 (374)
++|+++|+++ +.+|..|+ ||||+|+.+ +..+++++|+ + .|+++|.+|.+|+||||+|++.|+...++.
T Consensus 98 ~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll----~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~ 172 (186)
T 3t8k_A 98 KIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF----SQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172 (186)
T ss_dssp HHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH----TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHH
T ss_pred HHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHH----HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999997 89999999 999999994 4567899998 6 899999999999999999999998776664
Q ss_pred eeecccccccccccccc
Q 041107 145 YDIVPWKIAKAHFQATN 161 (374)
Q Consensus 145 l~L~~~l~~g~~~~~~n 161 (374)
| .+...+.+.++
T Consensus 173 L-----~~~~~~~~~~~ 184 (186)
T 3t8k_A 173 M-----EDYIKKYNLKE 184 (186)
T ss_dssp H-----HHHHHHHTCCC
T ss_pred H-----HHHHHHHhccc
Confidence 4 44444444443
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=3.3e-24 Score=182.89 Aligned_cols=140 Identities=20% Similarity=0.123 Sum_probs=122.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHH
Q 041107 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD-DRGWNVLH 94 (374)
Q Consensus 16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh 94 (374)
.|.+|+||||+|+..|+.++++.|++ +.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~ 115 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 35689999999999999999999999 8888 88999 9999999999999999999999999997 5666 89999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG 174 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~ 174 (374)
+|+..++.+++++|+ +.|++++.+|.+|+||||+|++.++. ..+.+|+++++..
T Consensus 116 ~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~----------------------~~~~~~l~~a~~~ 169 (183)
T 3deo_A 116 MAAGYVRPEVVEALV----ELGADIEVEDERGLTALELAREILKT----------------------TPKGNPMQFGRRI 169 (183)
T ss_dssp HHHHTTCHHHHHHHH----HHTCCTTCCCTTSCCHHHHHHHHHHT----------------------CCCCSHHHHHHHH
T ss_pred HHHhcCcHHHHHHHH----HcCCCCcCCCCCCCCHHHHHHHhccC----------------------cccccHHHHHHHc
Confidence 999999999999999 77899999999999999999997642 1345788888665
Q ss_pred CCccHHHHHHHHHh
Q 041107 175 FPDLEQEIQELSKA 188 (374)
Q Consensus 175 ~~~~~~~i~~~l~~ 188 (374)
+.. ++.+++.+
T Consensus 170 ~~~---~i~~~L~~ 180 (183)
T 3deo_A 170 GLE---KVINVLEG 180 (183)
T ss_dssp HHH---HHHHHHHT
T ss_pred CHH---HHHHHHHH
Confidence 544 66666654
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=3.1e-24 Score=173.91 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=119.5
Q ss_pred CCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhccc
Q 041107 43 DKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKK 122 (374)
Q Consensus 43 ~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~ 122 (374)
++++ +.++. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+. ++.+++++|+ +.+.++|.+
T Consensus 2 ~~~~-~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll----~~g~~~~~~ 73 (136)
T 1d9s_A 2 SPGI-HMLGG-SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLL----LHGAEPNCA 73 (136)
T ss_dssp CCCC-SCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHH----HHTCCSSCC
T ss_pred CCCc-cCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHH----HCCCCCCCc
Confidence 3455 77888 9999999999999999999999999986 8889999999999999 9999999999 788999999
Q ss_pred CCC-CCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107 123 DVK-GNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS 191 (374)
Q Consensus 123 d~~-G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~ 191 (374)
|.+ |+||||+|+..|+.+.++.| ++.|++++.+|..|+||+++|...+.. +++++|.+.|+
T Consensus 74 ~~~~g~t~L~~A~~~~~~~~v~~L-----l~~ga~~~~~d~~g~tpl~~A~~~~~~---~~~~~Ll~~Ga 135 (136)
T 1d9s_A 74 DPATLTRPVHDAAREGFLDTLVVL-----HRAGARLDVCDAWGRLPVDLAEEQGHR---DIARYLHAATG 135 (136)
T ss_dssp BTTTTBCHHHHHHHHTCHHHHHHH-----HHTCCCCCCCSSSSSCHHHHHHHHTCH---HHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCCccCCCCCCHHHHHHHcCCH---HHHHHHHHcCC
Confidence 999 99999999999987777665 789999999999999999999887765 77777776554
No 89
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=1.1e-23 Score=188.05 Aligned_cols=140 Identities=20% Similarity=0.124 Sum_probs=123.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHH
Q 041107 16 RDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVD-DRGWNVLH 94 (374)
Q Consensus 16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh 94 (374)
.+.+|.||||+|++.|+.++++.|++ +.++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDE-NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 34579999999999999999999999 8888 89999 9999999999999999999999999997 5666 88999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhC
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYG 174 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~ 174 (374)
+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..++ +..+.||+++|...
T Consensus 117 ~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~l~~A~~~~~----------------------~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 117 MAAGYVRPEVVEALV----ELGADIEVEDERGLTALELAREILK----------------------TTPKGNPMQFGRRI 170 (244)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHHT----------------------TCCCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH----HCCCCCCCCCCCCCcHHHHHHHHHh----------------------ccCCCCHHHHHHHc
Confidence 999999999999999 7799999999999999999997432 13578999998776
Q ss_pred CCccHHHHHHHHHh
Q 041107 175 FPDLEQEIQELSKA 188 (374)
Q Consensus 175 ~~~~~~~i~~~l~~ 188 (374)
+.. ++.+++.+
T Consensus 171 g~~---~iv~~L~~ 181 (244)
T 3ui2_A 171 GLE---KVINVLEG 181 (244)
T ss_dssp HHH---HHHHHHHH
T ss_pred ChH---HHHHHHHH
Confidence 655 56666655
No 90
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.89 E-value=1.3e-23 Score=195.79 Aligned_cols=157 Identities=15% Similarity=0.060 Sum_probs=129.5
Q ss_pred cHHHHHHHcCCHHHHHHHhhcCCccccc-ccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhc
Q 041107 22 TPLHYAVYLDRCFISKCLLEADKSAALI-SDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSF 100 (374)
Q Consensus 22 TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 100 (374)
+.+|.|+..+..++++.|++.|.++ +. +|. .|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV 175 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCS-CSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCc-ccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence 3358888888899999999999999 87 898 9999999999999999999999999997 899999999999999998
Q ss_pred c---HHHHHhHHhhcccch-hhhcccCCCCCcHHHHHHh----hccccccceeeecccccccc-----------------
Q 041107 101 Y---ARDLKHLVDKYPAVR-NLIFKKDVKGNTPFHVLAA----VCRQSYDARYDIVPWKIAKA----------------- 155 (374)
Q Consensus 101 ~---~~~~~~Ll~~~~~~~-~~~n~~d~~G~T~LH~A~~----~g~~~~~~~l~L~~~l~~g~----------------- 155 (374)
+ .++++.|+ +.+ .+++.+|.+|+||||+|++ .|+...++.| ++.+.
T Consensus 176 ~~~~~~~~~~ll----~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~L-----l~~~~~~~~~~~~~~i~~~~~~ 246 (327)
T 1sw6_A 176 NNYDSGTFEALL----DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY-----LDILMGWIVKKQNRPIQSGTNE 246 (327)
T ss_dssp HHHHTTCHHHHH----HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHH-----HHHHHHHHHHGGGCCEEEC---
T ss_pred ccccHHHHHHHH----HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHH-----HHHHHHHHhcccchHHHhhhhc
Confidence 8 67777776 333 6799999999999999998 6665555543 33321
Q ss_pred ----------------------------ccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCC
Q 041107 156 ----------------------------HFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQ 193 (374)
Q Consensus 156 ----------------------------~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~ 193 (374)
++|.+|.+|+||||+|...+.. +++++|.+.|+..
T Consensus 247 ~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~---~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI---SIVDALLDYGADP 309 (327)
T ss_dssp -------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCH---HHHHHHHHTTCCT
T ss_pred ccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCCC
Confidence 5788899999999999887776 8888888877764
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=9e-24 Score=171.24 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=110.1
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCc
Q 041107 49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT 128 (374)
Q Consensus 49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T 128 (374)
.+|. .|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|+ +.+.+++.+|.+|+|
T Consensus 5 ~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 5 FTNH-RGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLL----QHKALVNTTGYQNDS 78 (137)
T ss_dssp CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCGGGCC
T ss_pred CcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCcccCcCCCCCC
Confidence 4677 9999999999999999999999999986 888999999999999999999999998 778999999999999
Q ss_pred HHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHh
Q 041107 129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
|||+|+..|+.+.++.| ++.|++++.+|.+|+||+++|... ...++++++.+
T Consensus 79 ~L~~A~~~~~~~~v~~L-----l~~ga~~~~~~~~g~tpl~~A~~~---~~~~~l~~l~~ 130 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLL-----LSYGASRNAVNIFGLRPVDYTDDE---SMKSLLLLPEK 130 (137)
T ss_dssp HHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTSCCGGGGCCCH---HHHHHHSCC--
T ss_pred HHHHHHHcCCHHHHHHH-----HHcCCCCCCCCCCCCCHHHHHhhc---cHHHHHhhccc
Confidence 99999999987777666 788999999999999999999532 23355544444
No 92
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=1.1e-22 Score=164.69 Aligned_cols=123 Identities=18% Similarity=0.073 Sum_probs=112.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107 54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A 133 (374)
.|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.+++.+++++|+ +.|.++|.+|.+|+||||+|
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLL----KNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCcCCCCCCCHHHHH
Confidence 7899999999999999999999999996 888999999999999999999999999 77899999999999999999
Q ss_pred HhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhc
Q 041107 134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKAD 189 (374)
Q Consensus 134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~ 189 (374)
+..|+.+.++.| ++.|++++..|.+|+||+++|...+.. ++.++|.+.
T Consensus 88 ~~~~~~~~v~~L-----l~~g~~~~~~~~~g~tpl~~A~~~~~~---~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVL-----LKHGADVNAQDKFGKTAFDISIGNGNE---DLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHC
T ss_pred HHcCCHHHHHHH-----HHcCCCCcCcCCCCCCHHHHHHHCCCH---HHHHHHHHc
Confidence 999987777666 788999999999999999999887776 667766653
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=8.7e-23 Score=187.99 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=120.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCccccc------ccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCC
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAALI------SDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDDRGW 90 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~ 90 (374)
+.++||.|+..|+.+.++.|++.++++ +. .+. .|+||||+|+.. |+.+++++|+++++++ +.+|.+|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCS-CEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCC-CCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 457799999999999999999999998 55 577 999999999997 8999999999999996 88999999
Q ss_pred cHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHH
Q 041107 91 NVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHI 170 (374)
Q Consensus 91 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~ 170 (374)
||||+|+..|+.+++++|+ +.|++++.+|.+|+||||+|+..|+.++++.| ++.|++ .|.||+|+
T Consensus 228 TpLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~L-----l~~ga~------~g~tpLh~ 292 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLL----KGRALVGTVNEAGETALDIARKKHHKECEELL-----EQAQAG------TFAFPLHV 292 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHHHH------TTSSCCC-
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHhcCC------CCCChhHH
Confidence 9999999999999999999 78999999999999999999999987777655 677776 68999999
Q ss_pred HHhCCC
Q 041107 171 YRYGFP 176 (374)
Q Consensus 171 a~~~~~ 176 (374)
|...+.
T Consensus 293 A~~~g~ 298 (301)
T 2b0o_E 293 DYSWVI 298 (301)
T ss_dssp ------
T ss_pred HHhcCC
Confidence 976554
No 94
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=3.2e-22 Score=158.82 Aligned_cols=125 Identities=24% Similarity=0.228 Sum_probs=114.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107 54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A 133 (374)
+|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..++.+++++|+ +.+.+++.+|..|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHH----HcCCCCcccCCCCCcHHHHH
Confidence 5899999999999999999999999986 788999999999999999999999998 77889999999999999999
Q ss_pred HhhccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCC
Q 041107 134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGS 191 (374)
Q Consensus 134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~ 191 (374)
+..|+.+.++.| ++.|++++.+|.+|+||+++|...+.. ++++++.+.|+
T Consensus 76 ~~~~~~~~~~~L-----l~~g~~~~~~~~~g~t~l~~A~~~~~~---~~~~~Ll~~Ga 125 (126)
T 1n0r_A 76 ARNGHLEVVKLL-----LEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEAGA 125 (126)
T ss_dssp HHTTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHTC
T ss_pred HHcChHHHHHHH-----HHcCCCCcccCCCCCCHHHHHHHcCcH---HHHHHHHHcCC
Confidence 999987777666 788999999999999999999887776 78888777665
No 95
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=1.7e-22 Score=167.54 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=98.4
Q ss_pred hHHHHhhCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCch-HHHHHHHcCCHHHHHHHHHhCCC
Q 041107 2 PLLLLDKKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMT-ALHLAAGRGDVWMVQEIIDHCPE 80 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t-pLh~Aa~~g~~~~v~~Ll~~~~~ 80 (374)
++.|++. +..++.+|..|+||||+|+ .|+.+++++|+++|+++ +.+|. .|+| |||+|+..|+.+++++|++++++
T Consensus 28 v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~-~g~ttpL~~A~~~~~~~~v~~Ll~~ga~ 103 (156)
T 1bi7_B 28 VRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP-ATLTRPVHDAAREGFLDTLVVLHRAGAR 103 (156)
T ss_dssp HHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT-TTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC-CCCcHHHHHHHHCCCHHHHHHHHHcCCC
Confidence 4556655 6789999999999999985 89999999999999999 99999 9999 99999999999999999999999
Q ss_pred ccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107 81 CCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 81 ~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A 133 (374)
+ +.+|..|+||||+|+.+++.+++++|+ +.|++++.+|..|+||.+-+
T Consensus 104 ~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll----~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 104 L-DVRDAWGRLPVDLAEELGHRDVARYLR----AAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp S-SCCCTTCCCHHHHHHHHTCHHHHHHHS----SCC-----------------
T ss_pred C-cccCCCCCCHHHHHHHhCHHHHHHHHH----HcCCCCCccCcCcCcccccC
Confidence 6 889999999999999999999999998 88999999999999998744
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=3.6e-22 Score=158.73 Aligned_cols=108 Identities=16% Similarity=0.026 Sum_probs=101.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107 54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A 133 (374)
.|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+.+++.+++++|+ +.|.++|.+|.+|+||||+|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL----LKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHH----TTTCCTTCCCTTSCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCcCCCCCCCHHHHH
Confidence 7899999999999999999999999986 888999999999999999999999998 78899999999999999999
Q ss_pred HhhccccccceeeeccccccccccccccCCCCChHHHH
Q 041107 134 AAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIY 171 (374)
Q Consensus 134 ~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a 171 (374)
+..|+.+.++.| ++.|++++.+|.+|+||+++|
T Consensus 81 ~~~~~~~~v~~L-----l~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 81 VYEGHVSCVKLL-----LSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHTCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHC
T ss_pred HHcCCHHHHHHH-----HHcCCCCCCcCCCCCCHHHHh
Confidence 999987777665 788999999999999999999
No 97
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=1e-21 Score=154.05 Aligned_cols=109 Identities=21% Similarity=0.132 Sum_probs=101.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHH
Q 041107 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLH 94 (374)
Q Consensus 15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 94 (374)
.+|.+|+||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCS-SSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCC-CCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 46899999999999999999999999999998 88998 9999999999999999999999999996 888999999999
Q ss_pred HHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHH
Q 041107 95 FAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPF 130 (374)
Q Consensus 95 ~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~L 130 (374)
+|+..++.+++++|+ +.|+++|.+|..|.||-
T Consensus 81 ~A~~~~~~~~~~~Ll----~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLD----AKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHH----TTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHH----HcCCCCCcCCccccccc
Confidence 999999999999998 88999999999999873
No 98
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=7.3e-22 Score=186.29 Aligned_cols=148 Identities=13% Similarity=0.037 Sum_probs=113.9
Q ss_pred CCCCCcHHHHHHHc-CCHHHHHHHhhcCCccccccc--CCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHH
Q 041107 17 DRHGWTPLHYAVYL-DRCFISKCLLEADKSAALISD--EDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVL 93 (374)
Q Consensus 17 d~~g~TpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 93 (374)
+..+.||||.|+.. |+.++++.|+++|+++ +..+ . .|+||||+|+..|+.+++++|+++++++ +..|..|+|||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~-~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL 272 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQ-DNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL 272 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-Ccccccc-CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 34567899999999 9999999999999999 7777 6 9999999999999999999999999996 88999999999
Q ss_pred HHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107 94 HFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY 173 (374)
Q Consensus 94 h~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~ 173 (374)
|+|+..++.+++++|+ +.|++++.+|.+|+||||+|+..|+.+++..| + .....+.+....+..+.|+++++..
T Consensus 273 h~A~~~g~~~~v~~LL----~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lL-l-~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 273 HHATILGHTGLACLFL----KRGADLGARDSEGRDPLTIAMETANADIVTLL-R-LAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-H-HHHC---------------------
T ss_pred HHHHHcCcHHHHHHHH----HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHH-H-HcCCCcccccccCCCCCCHHHHHHH
Confidence 9999999999999999 78999999999999999999999987777655 2 1112334555677788899888754
No 99
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=179.02 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=103.7
Q ss_pred hHHHHhhCCccccc------cCCCCCcHHHHHHHc---CCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHH
Q 041107 2 PLLLLDKKKSLTRE------RDRHGWTPLHYAVYL---DRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72 (374)
Q Consensus 2 ~~~lL~~~~~~~~~------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~ 72 (374)
+++|+.. +.+++. .|..|+||||+|+.. |+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++
T Consensus 167 v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~-~G~TpLh~A~~~g~~~~v~ 243 (301)
T 2b0o_E 167 VLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA-DGNTALHYAALYNQPDCLK 243 (301)
T ss_dssp HHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT-TCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC-CCCCHHHHHHHcCCHHHHH
Confidence 3455544 455666 688999999999997 8999999999999999 99998 9999999999999999999
Q ss_pred HHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccc
Q 041107 73 EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQ 139 (374)
Q Consensus 73 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~ 139 (374)
+|+++|+++ +.+|.+|+||||+|+..++.+++++|+ +.+++ .|+||||+|++.|+.
T Consensus 244 ~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll----~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 244 LLLKGRALV-GTVNEAGETALDIARKKHHKECEELLE----QAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHH----HHHHH------TTSSCCC--------
T ss_pred HHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH----HhcCC------CCCChhHHHHhcCCc
Confidence 999999996 899999999999999999999999998 55544 689999999998863
No 100
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=6.1e-21 Score=143.85 Aligned_cols=88 Identities=31% Similarity=0.356 Sum_probs=83.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHH
Q 041107 19 HGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMV 98 (374)
Q Consensus 19 ~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 98 (374)
+|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 5899999999999999999999999999 99999 9999999999999999999999999996 8899999999999999
Q ss_pred hccHHHHHhHH
Q 041107 99 SFYARDLKHLV 109 (374)
Q Consensus 99 ~~~~~~~~~Ll 109 (374)
.++.+++++|+
T Consensus 78 ~~~~~~~~~Ll 88 (93)
T 1n0q_A 78 NGHLEVVKLLL 88 (93)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999999998
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=1.3e-22 Score=173.00 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=112.6
Q ss_pred HHcCCHHHHHHHhhcCCccc----------ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107 28 VYLDRCFISKCLLEADKSAA----------LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM 97 (374)
Q Consensus 28 a~~g~~~~v~~Ll~~~~~~~----------~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 97 (374)
++.|..+.+++|++.+.... ...+. +|+||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+
T Consensus 8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~ 84 (183)
T 3deo_A 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA 84 (183)
T ss_dssp EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHH-HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHH
T ss_pred HHhcCCchhHHHHHHhCCCCccccchhcccccCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHH
Confidence 34455556666665322211 12355 88999999999999999999999 7775 889999999999999
Q ss_pred HhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107 98 VSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY 173 (374)
Q Consensus 98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~ 173 (374)
.+|+.+++++|+ +.|.++|.+| .+|+||||+|+..|+.+.++.| ++.|++++.+|.+|+||+|+|.+
T Consensus 85 ~~~~~~~v~~Ll----~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 85 GLGSDKCVRLLA----EAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL-----VELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp HHTCHHHHHHHH----HTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHH-----HHHTCCTTCCCTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHH----HcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHH-----HHcCCCCcCCCCCCCCHHHHHHH
Confidence 999999999999 7889999999 8999999999999987777666 78899999999999999999965
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.84 E-value=4.4e-23 Score=195.30 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=121.7
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHhhcCCccc--ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCcc--ccccCCC
Q 041107 14 RERDRHGWTPLHYAVYLDRCFISKCLLEADKSAA--LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECC--EVVDDRG 89 (374)
Q Consensus 14 ~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~g 89 (374)
...+.+++||||+||+.|+.++|++|+++++... ...+. .|.||||+||.+|+.+++++|++++++.. +..+.+
T Consensus 86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~- 163 (376)
T 2aja_A 86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN- 163 (376)
T ss_dssp HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence 3456677899999999999999999999887321 23455 78899999999999999999999997521 222233
Q ss_pred CcHHHHHHHhccHHHHHhHHhhcccchhhhcc--cCCCCCcHHHHHH-hhccccccceeeeccccccccccccccCCCCC
Q 041107 90 WNVLHFAMVSFYARDLKHLVDKYPAVRNLIFK--KDVKGNTPFHVLA-AVCRQSYDARYDIVPWKIAKAHFQATNKQNIS 166 (374)
Q Consensus 90 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~--~d~~G~T~LH~A~-~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t 166 (374)
+||||+|+.+|+.+++++|+ +.|++++. +|.+|+||||+|+ ..|+.++++.| ++.|.+ |.|
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll----~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L-----l~~ga~-------~~t 227 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLC----ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL-----LDCPVM-------LAY 227 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH-----TTSHHH-------HHH
T ss_pred CCHHHHHHHCCCHHHHHHHH----HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHH-----HhCCCc-------cch
Confidence 99999999999999999999 77888877 8999999999999 99998888766 566643 789
Q ss_pred hHHHHHhCCCccHHHHHHHHHh
Q 041107 167 AEHIYRYGFPDLEQEIQELSKA 188 (374)
Q Consensus 167 ~l~~a~~~~~~~~~~i~~~l~~ 188 (374)
|++.|...++. ++.+++.+
T Consensus 228 aL~~Aa~~g~~---evv~lL~~ 246 (376)
T 2aja_A 228 AEIHEFEYGEK---YVNPFIAR 246 (376)
T ss_dssp HHHCTTTTTTT---THHHHHHH
T ss_pred HHHHHHHCCCH---HHHHHHHh
Confidence 99999877665 34444444
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=2.6e-21 Score=190.43 Aligned_cols=136 Identities=17% Similarity=0.082 Sum_probs=114.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCcccccc------cCCCCchHHHHHHH---cCCHHHHHHHHHhCCCccccccCCCC
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAALIS------DEDRKMTALHLAAG---RGDVWMVQEIIDHCPECCEVVDDRGW 90 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~ 90 (374)
..+.||.|+..|+.+.++.|++.|+++ +.+ |. .|+||||+|+. .|+.+++++|+++|+++ +.+|.+|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~-~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQA-PEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCC-SCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCccccc-ccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 347899999999999999999999998 655 77 99999999966 89999999999999996 89999999
Q ss_pred cHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCCh
Q 041107 91 NVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISA 167 (374)
Q Consensus 91 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~ 167 (374)
||||+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+...+..| ++.|++++..+....++
T Consensus 209 TpLh~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L-----l~~ga~~~~~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLL----KGRALVGTVNEAGETALDIARKKHHKECEELL-----EQAQAGTFAFPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHH----HTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHH-----HHTCC------------
T ss_pred cHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH-----HHhCCCCCCCcceeecc
Confidence 9999999999999999999 78999999999999999999999987777665 89999988754444333
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=5.5e-21 Score=173.93 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=104.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhcCCccc-----ccccCCCCchHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCc
Q 041107 20 GWTPLHYAVYLDRCFISKCLLEADKSAA-----LISDEDRKMTALHLAAGR---GDVWMVQEIIDHCPECCEVVDDRGWN 91 (374)
Q Consensus 20 g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~d~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 91 (374)
..++||.|+..|+.+.++.+++.|.++. +..|. .|+||||+|+.. |+.+++++|+++|+++ +.+|..|+|
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~T 207 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGST 207 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCC
Confidence 3468899999999999999998888852 33466 889999999988 8899999999999886 788889999
Q ss_pred HHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccc
Q 041107 92 VLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 92 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
|||+|+.+|+.+++++|+ +.|+++|.+|.+|+||||+|+..|+.+.++.| ++.|++
T Consensus 208 pLh~A~~~g~~~~v~~Ll----~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~ 263 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLL----RGKASIEIANESGETPLDIAKRLKHEHCEELL-----TQALSG 263 (278)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----HHHHTT
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHH-----HHcCCC
Confidence 999999999999999998 77888999999999999999998887666655 566654
No 105
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=1.4e-21 Score=171.53 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=123.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhhcCC--------------cccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 041107 16 RDRHGWTPLHYAVYLDRCFISKCLLEADK--------------SAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPEC 81 (374)
Q Consensus 16 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~--------------~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 81 (374)
.|.++.++.+++.+.|+...+..+.+.+- ......+. .|.||||+|+..|+.++++.|++.++++
T Consensus 21 ~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 99 (222)
T 3ehr_A 21 YTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAE-SIDNPLHEAAKRGNLSWLRECLDNRVGV 99 (222)
T ss_dssp SCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEE-EESCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccccc-ccccccccccccCcHHHHHHHHhCCCCc
Confidence 34566677777776666543322222110 00123455 7899999999999999999999999996
Q ss_pred cccccCCCCcHHHHHHHhccHHHHHhHHhhcccc-hhhhcccCCCCCcHHHHHHhhccccccceeeeccccccccccccc
Q 041107 82 CEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAV-RNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQAT 160 (374)
Q Consensus 82 ~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~ 160 (374)
+.+|..|+||||+|+.+|+.+++++|+ +. +.++|.+|.+|+||||+|+..|+...++.| ++.|++++.+
T Consensus 100 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~L-----l~~ga~~~~~ 169 (222)
T 3ehr_A 100 -NGLDKAGSTALYWACHGGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLL-----LAKGARTDLR 169 (222)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHT----TSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHH-----HHHTCCSCCC
T ss_pred -cccCCCCCCHHHHHHHcCCHHHHHHHH----cCCCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----HHcCCCCccc
Confidence 888999999999999999999999998 55 889999999999999999999987777666 7889999999
Q ss_pred cCCCCChHHHHHhCCCccHHHHHHHHHhcCCC
Q 041107 161 NKQNISAEHIYRYGFPDLEQEIQELSKADGSG 192 (374)
Q Consensus 161 n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~ 192 (374)
|.+|+||+++|...+ ..++++.+.+.++.
T Consensus 170 ~~~g~t~l~~A~~~~---~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 170 NIEKKLAFDMATNAA---CASLLKKKQGTDAV 198 (222)
T ss_dssp CTTSCCHHHHCCSHH---HHHHHC--------
T ss_pred cCCCCCHHHHhcchh---HHHHHHHHhccchh
Confidence 999999999996533 33666666554443
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=2.7e-22 Score=179.06 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=119.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 041107 18 RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAM 97 (374)
Q Consensus 18 ~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 97 (374)
..+.+++..++..|+.+.++.+...+.+. +. +|.||||+|+..|+.++++.|++ ++++ +.+|..|+||||+|+
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADV----VS-EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA 85 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHHH----HH-HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred CCCccHHHHHHHcCCCccccccccccccc----cc-CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence 35667777777777766655555444333 45 89999999999999999999999 8875 889999999999999
Q ss_pred HhccHHHHHhHHhhcccchhhhcccC-CCCCcHHHHHHhhccccccceeeeccccccccccccccCCCCChHHHHHh
Q 041107 98 VSFYARDLKHLVDKYPAVRNLIFKKD-VKGNTPFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRY 173 (374)
Q Consensus 98 ~~~~~~~~~~Ll~~~~~~~~~~n~~d-~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~ 173 (374)
.+|+.+++++|+ +.|+++|.+| .+|+||||+|+..|+...++.| ++.|++++.+|.+|+||+|+|..
T Consensus 86 ~~g~~~~v~~Ll----~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~L-----l~~ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 86 GLGSDKCVRLLA----EAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL-----VELGADIEVEDERGLTALELARE 153 (244)
T ss_dssp HHTCHHHHHHHH----HTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHH-----HHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HCCCHHHHHHHH----HcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH-----HHCCCCCCCCCCCCCcHHHHHHH
Confidence 999999999999 7899999999 8899999999999987777665 78899999999999999999964
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=8.5e-20 Score=166.06 Aligned_cols=170 Identities=16% Similarity=0.090 Sum_probs=137.6
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHhhcCC-------ccc-------------cc----------ccCCCCchHHHHHHH
Q 041107 15 ERDRHGWTPLHYAVYLDRCFISKCLLEADK-------SAA-------------LI----------SDEDRKMTALHLAAG 64 (374)
Q Consensus 15 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~-------~~~-------------~~----------~d~~~g~tpLh~Aa~ 64 (374)
..|..+.++|+.+...|+..+.+++...-+ +.. +. .+. ...++||.|+.
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~a~~ 139 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA-AKLHSLCEAVK 139 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccc-hhhhhhhhHhh
Confidence 357788899999999999777666543211 110 00 000 22478999999
Q ss_pred cCCHHHHHHHHHhCCCcc-----ccccCCCCcHHHHHHHh---ccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhh
Q 041107 65 RGDVWMVQEIIDHCPECC-----EVVDDRGWNVLHFAMVS---FYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV 136 (374)
Q Consensus 65 ~g~~~~v~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~ 136 (374)
.|+.+.++.+++.++++. +..|..|+||||+|+.. ++.+++++|+ +.|+++|.+|.+|+||||+|+..
T Consensus 140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll----~~ga~in~~d~~g~TpLh~A~~~ 215 (278)
T 1dcq_A 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV----QNSGNLDKQTGKGSTALHYCCLT 215 (278)
T ss_dssp TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH----HHCSCTTCCCTTCCCHHHHHHHT
T ss_pred hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH----HCCCCccccCCCCCCHHHHHHHc
Confidence 999999999999999853 34488999999999999 8999999999 78999999999999999999999
Q ss_pred ccccccceeeeccccccccccccccCCCCChHHHHHhCCCccHHHHHHHHHhcCCCCCCCc
Q 041107 137 CRQSYDARYDIVPWKIAKAHFQATNKQNISAEHIYRYGFPDLEQEIQELSKADGSGQYPDG 197 (374)
Q Consensus 137 g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l~~a~~~~~~~~~~i~~~l~~~~~~~~~~~ 197 (374)
|+.+.++.| ++.|++++.+|.+|+||+|+|...+.. ++.+.|.+.++...+.+
T Consensus 216 g~~~~v~~L-----l~~gad~~~~d~~g~tpL~~A~~~~~~---~~v~~Ll~~ga~~~~~~ 268 (278)
T 1dcq_A 216 DNAECLKLL-----LRGKASIEIANESGETPLDIAKRLKHE---HCEELLTQALSGRFNSH 268 (278)
T ss_dssp TCHHHHHHH-----HHTTCCTTCCCTTSCCHHHHHHHTTCH---HHHHHHHHHHTTCCCSS
T ss_pred CCHHHHHHH-----HHcCCCCCCccCCCCCHHHHHHHcCCH---HHHHHHHHcCCCCCCcc
Confidence 988777765 789999999999999999999888776 78888888777654443
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=3.8e-20 Score=139.47 Aligned_cols=93 Identities=26% Similarity=0.245 Sum_probs=83.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHH
Q 041107 54 RKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVL 133 (374)
Q Consensus 54 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A 133 (374)
+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.+++++|+ +.|++++.+|.+|+||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCCccCCCCCCHHHHH
Confidence 4899999999999999999999999996 889999999999999999999999998 78999999999999999999
Q ss_pred Hhhccccccceeeeccccccccc
Q 041107 134 AAVCRQSYDARYDIVPWKIAKAH 156 (374)
Q Consensus 134 ~~~g~~~~~~~l~L~~~l~~g~~ 156 (374)
++.|+.+.++.| ++.|++
T Consensus 76 ~~~~~~~~~~~L-----l~~ga~ 93 (93)
T 1n0q_A 76 ARNGHLEVVKLL-----LEAGAY 93 (93)
T ss_dssp HHTTCHHHHHHH-----HHTTCC
T ss_pred HHcCCHHHHHHH-----HHcCCC
Confidence 999987777655 666653
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.5e-20 Score=147.30 Aligned_cols=109 Identities=20% Similarity=0.154 Sum_probs=98.9
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCc
Q 041107 49 ISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNT 128 (374)
Q Consensus 49 ~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T 128 (374)
.+|+ +|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|+ +.|.+++.+|.+|+|
T Consensus 4 ~~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~d~~g~t 77 (115)
T 2l6b_A 4 WGSK-DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL----AKGADVNARSKDGNT 77 (115)
T ss_dssp CCSC-SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHT----TTTCCTTCCCTTCCC
T ss_pred ccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHH----HcCCCCcccCCCCCC
Confidence 4677 9999999999999999999999999996 888999999999999999999999998 778999999999999
Q ss_pred HHHHHHhhccccccceeeeccccccccccccccCCCCChH
Q 041107 129 PFHVLAAVCRQSYDARYDIVPWKIAKAHFQATNKQNISAE 168 (374)
Q Consensus 129 ~LH~A~~~g~~~~~~~l~L~~~l~~g~~~~~~n~~g~t~l 168 (374)
|||+|+..|+.+.++.| ++.|+++|..+..|.+|.
T Consensus 78 pl~~A~~~~~~~~~~~L-----l~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 78 PEHLAKKNGHHEIVKLL-----DAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTHHHHTTTCHHHHHHH-----HTTSSSHHHHSCCCC---
T ss_pred HHHHHHHCCCHHHHHHH-----HHcCCCCCcCCccccccc
Confidence 99999999987777665 899999999999999884
No 110
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.78 E-value=3.3e-21 Score=182.45 Aligned_cols=151 Identities=11% Similarity=0.040 Sum_probs=117.6
Q ss_pred hHHHHhhCCc--cccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcc--cccccCCCCchHHHHHHHcCCHHHHHHHHHh
Q 041107 2 PLLLLDKKKS--LTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSA--ALISDEDRKMTALHLAAGRGDVWMVQEIIDH 77 (374)
Q Consensus 2 ~~~lL~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 77 (374)
++.|++.+.. ..+..|..|.||||+||+.|+.++|++|+++|++. .+..+. + +||||+||..|+.+++++|+++
T Consensus 108 v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~~G~~eiv~~Ll~~ 185 (376)
T 2aja_A 108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAENGHLHVLNRLCEL 185 (376)
T ss_dssp HHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHHTTCHHHHHHHHHS
T ss_pred HHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHHCCCHHHHHHHHHc
Confidence 4566665431 22344557889999999999999999999999763 133444 4 9999999999999999999999
Q ss_pred CCCcccc--ccCCCCcHHHHHH-HhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhccccccceeeeccccccc
Q 041107 78 CPECCEV--VDDRGWNVLHFAM-VSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVCRQSYDARYDIVPWKIAK 154 (374)
Q Consensus 78 ~~~~~~~--~d~~g~t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g~~~~~~~l~L~~~l~~g 154 (374)
|+++ .. .|.+|+||||+|+ .+|+.+++++|+ +.|+ .|+||||+|+..|+.++++.| ++.|
T Consensus 186 ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll----~~ga-------~~~taL~~Aa~~g~~evv~lL-----~~~g 248 (376)
T 2aja_A 186 APTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLL----DCPV-------MLAYAEIHEFEYGEKYVNPFI-----ARHV 248 (376)
T ss_dssp CGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHT----TSHH-------HHHHHHHCTTTTTTTTHHHHH-----HHHH
T ss_pred CCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHH----hCCC-------ccchHHHHHHHCCCHHHHHHH-----HhcC
Confidence 9986 44 7889999999999 999999999998 4443 289999999999998766655 7889
Q ss_pred cccccccCCCCChHHHHHhCC
Q 041107 155 AHFQATNKQNISAEHIYRYGF 175 (374)
Q Consensus 155 ~~~~~~n~~g~t~l~~a~~~~ 175 (374)
++++..+. +++.|...+
T Consensus 249 a~~~~~~~----~l~~A~~~g 265 (376)
T 2aja_A 249 NRLKEMHD----AFKLSNPDG 265 (376)
T ss_dssp HHHHHHHT----TTTTTSSSS
T ss_pred cccccccH----HHHHHHHCC
Confidence 88877654 455554433
No 111
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=4.5e-19 Score=137.99 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=84.0
Q ss_pred hCCccccccCCCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccC
Q 041107 8 KKKSLTRERDRHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDD 87 (374)
Q Consensus 8 ~~~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 87 (374)
..+......|.+|.||||+|+..|+.+++++|+++++++ +.+|. .|+||||+|+..|+.+++++|+++++++ +.+|.
T Consensus 12 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~-~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~ 88 (110)
T 2zgd_A 12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK-NGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDK 88 (110)
T ss_dssp C---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred CCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccc
Confidence 446667788999999999999999999999999999998 88898 9999999999999999999999999986 88899
Q ss_pred CCCcHHHHHHHhccHHHHHhH
Q 041107 88 RGWNVLHFAMVSFYARDLKHL 108 (374)
Q Consensus 88 ~g~t~Lh~A~~~~~~~~~~~L 108 (374)
.|+||||+|+.+++.+++++|
T Consensus 89 ~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 89 FGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHh
Confidence 999999999999999999876
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.77 E-value=1.3e-18 Score=164.00 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=97.9
Q ss_pred hHHHHhhCCccccccC--CCCCcHHHHHHHcCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHHHHHHhCC
Q 041107 2 PLLLLDKKKSLTRERD--RHGWTPLHYAVYLDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQEIIDHCP 79 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 79 (374)
++.|| ..+.+++..| ..|+||||+|+..|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.+++++|+++|+
T Consensus 216 v~~LL-~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~-~G~TpLh~A~~~g~~~~v~~LL~~Ga 292 (368)
T 3jue_A 216 MADAL-AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADS-AGRGPLHHATILGHTGLACLFLKRGA 292 (368)
T ss_dssp HHHHH-HTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHH-HcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCC-CCCCHHHHHHHcCcHHHHHHHHHCcC
Confidence 34455 4567788888 88999999999999999999999999999 89999 99999999999999999999999999
Q ss_pred CccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhhc
Q 041107 80 ECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAVC 137 (374)
Q Consensus 80 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~g 137 (374)
++ +..|.+|+||||+|+..++.+++++|++.. .........+..+.|+|+++....
T Consensus 293 d~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~-~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 293 DL-GARDSEGRDPLTIAMETANADIVTLLRLAK-MREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp CT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-C-----------------------
T ss_pred CC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCcccccccCCCCCCHHHHHHHHH
Confidence 96 889999999999999999999999998432 233455566788899999887654
No 113
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.77 E-value=1.2e-18 Score=171.45 Aligned_cols=121 Identities=17% Similarity=0.043 Sum_probs=98.4
Q ss_pred hHHHHhhCCcccccc------CCCCCcHHHHHHH---cCCHHHHHHHhhcCCcccccccCCCCchHHHHHHHcCCHHHHH
Q 041107 2 PLLLLDKKKSLTRER------DRHGWTPLHYAVY---LDRCFISKCLLEADKSAALISDEDRKMTALHLAAGRGDVWMVQ 72 (374)
Q Consensus 2 ~~~lL~~~~~~~~~~------d~~g~TpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~~g~tpLh~Aa~~g~~~~v~ 72 (374)
++.||+. +.++|.+ |..|+||||+|+. .|+.+++++|+++|+++ +.+|. .|+||||+|+..|+.++++
T Consensus 148 v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~-~g~TpLh~A~~~g~~~~v~ 224 (497)
T 3lvq_E 148 VLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA-DGNTALHYAALYNQPDCLK 224 (497)
T ss_dssp HHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCS-SSCCHHHHHTTTTCHHHHH
T ss_pred HHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCC-CCCcHHHHHHHcCCHHHHH
Confidence 3455555 4667766 8899999999976 89999999999999999 99999 9999999999999999999
Q ss_pred HHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCCcHHHHHHhh
Q 041107 73 EIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGNTPFHVLAAV 136 (374)
Q Consensus 73 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~T~LH~A~~~ 136 (374)
+|+++|+++ +.+|.+|+||||+|+..|+.+++++|+ +.|++++. ||+|.+...
T Consensus 225 ~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll----~~ga~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 225 LLLKGRALV-GTVNEAGETALDIARKKHHKECEELLE----QAQAGTFA------FPLHVDYSW 277 (497)
T ss_dssp HHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHH----HTCC-------------------
T ss_pred HHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH----HhCCCCCC------Ccceeeccc
Confidence 999999996 889999999999999999999999998 77777765 577766543
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=2.7e-17 Score=127.79 Aligned_cols=90 Identities=18% Similarity=0.108 Sum_probs=80.1
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHHhccHHHHHhHHhhcccchhhhcccCCCCC
Q 041107 48 LISDEDRKMTALHLAAGRGDVWMVQEIIDHCPECCEVVDDRGWNVLHFAMVSFYARDLKHLVDKYPAVRNLIFKKDVKGN 127 (374)
Q Consensus 48 ~~~d~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~n~~d~~G~ 127 (374)
...|. +|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.+++.+++++|+ +.|++++.+|.+|+
T Consensus 18 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~ 91 (110)
T 2zgd_A 18 SHMGS-DLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLL----EAGADVXAQDKFGK 91 (110)
T ss_dssp ----C-CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSC
T ss_pred cccCC-ccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccccCCC
Confidence 45566 9999999999999999999999999986 788999999999999999999999999 77899999999999
Q ss_pred cHHHHHHhhccccccc
Q 041107 128 TPFHVLAAVCRQSYDA 143 (374)
Q Consensus 128 T~LH~A~~~g~~~~~~ 143 (374)
||||+|+..|+.+.++
T Consensus 92 tpl~~A~~~~~~~~~~ 107 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAE 107 (110)
T ss_dssp CHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHcCCHHHHH
Confidence 9999999998755543
No 115
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=58.46 E-value=8.3 Score=35.31 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHh----ccCCcceeeehhhHHHHHHHHHHHhhhheeccc
Q 041107 314 SFTLVAMAAMIVAFVTGTYAV----LAPSLGLAIVTCIIGLTFFLLVVFMFYKVRSKA 367 (374)
Q Consensus 314 ~~l~~s~~~m~~af~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
.+..+|+.++..+|++|+|=+ +|...|-..+..++++++ ++++.++++++.|+
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~-~i~~~~~~~Fkrk~ 361 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMG-VIAVIMVVYFKKKK 361 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHH-HHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHH-HHHHHHHHHHHHcc
Confidence 456678888999999999944 444444333333343333 33344555555443
No 116
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=52.28 E-value=8.8 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHh
Q 041107 314 SFTLVAMAAMIVAFVTGTYAV 334 (374)
Q Consensus 314 ~~l~~s~~~m~~af~~~~~~v 334 (374)
.+..+|+.++..+|++|+|=+
T Consensus 281 ~LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 456678888999999999954
No 117
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.20 E-value=34 Score=20.72 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=7.2
Q ss_pred eeeehhhHHHHHH
Q 041107 341 LAIVTCIIGLTFF 353 (374)
Q Consensus 341 ~~~~~~~~~~~~~ 353 (374)
-+|+..+++.++.
T Consensus 11 ~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 11 PSIATGMVGALLL 23 (44)
T ss_dssp SSSTHHHHHHHHH
T ss_pred ceEEeehhHHHHH
Confidence 3666666663333
No 118
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.59 E-value=22 Score=21.51 Aligned_cols=28 Identities=11% Similarity=0.440 Sum_probs=12.1
Q ss_pred eeehhhHHHHHHHHH-HHhhhheeccccc
Q 041107 342 AIVTCIIGLTFFLLV-VFMFYKVRSKAVE 369 (374)
Q Consensus 342 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 369 (374)
.|+..++++.+++.. ..++++.|.+|.+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 344455554333333 3334444444443
No 119
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=28.45 E-value=2.6e+02 Score=24.40 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=9.2
Q ss_pred hhhchHHHHHHHHHHH
Q 041107 277 VVSDAIAMVLSLSAVF 292 (374)
Q Consensus 277 ~~~n~~a~~~S~~~~~ 292 (374)
.++|.++.+.++.++-
T Consensus 48 sl~D~~s~~i~l~~~~ 63 (306)
T 3j1z_P 48 SFADTLASIINFIAIR 63 (306)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666665555444
No 120
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=24.11 E-value=26 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=12.9
Q ss_pred HHHhhhheeccccccc
Q 041107 356 VVFMFYKVRSKAVEDE 371 (374)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (374)
+..|+-.+||||.|++
T Consensus 68 ~GImLsYiRSKk~E~s 83 (138)
T 2k21_A 68 LGIMLSYIRSKKLEHS 83 (138)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhHhhhcccc
Confidence 3788899999998764
No 121
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=23.13 E-value=56 Score=18.98 Aligned_cols=17 Identities=12% Similarity=-0.101 Sum_probs=11.1
Q ss_pred HHHHHHcCCHHHHHHHh
Q 041107 24 LHYAVYLDRCFISKCLL 40 (374)
Q Consensus 24 Lh~Aa~~g~~~~v~~Ll 40 (374)
...||+.|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 35677777777776653
No 122
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=22.63 E-value=46 Score=20.12 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=4.8
Q ss_pred eeehhhHH
Q 041107 342 AIVTCIIG 349 (374)
Q Consensus 342 ~~~~~~~~ 349 (374)
+|+..+++
T Consensus 11 aIA~gVVg 18 (44)
T 2l2t_A 11 LIAAGVIG 18 (44)
T ss_dssp HHHHHHHH
T ss_pred eEEEeehH
Confidence 56666665
No 123
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=20.09 E-value=3.7e+02 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=11.0
Q ss_pred cchhhhhhchHHHHHHHHHHHH
Q 041107 272 AFQSFVVSDAIAMVLSLSAVFV 293 (374)
Q Consensus 272 ~F~~F~~~n~~a~~~S~~~~~~ 293 (374)
.+..|-++=++-+.+-+.++++
T Consensus 59 LLi~fav~Ttllv~vml~AlMI 80 (214)
T 4hkr_A 59 MLIAFAICTTLLVAVHMLALMI 80 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655544444444443
Done!