Query 041108
Match_columns 102
No_of_seqs 103 out of 1005
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:00:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phx_B Ubiquitin-like protein 99.9 4E-22 1.4E-26 121.2 9.5 75 1-81 5-79 (79)
2 4fbj_B NEDD8; effector-HOST ta 99.9 1.1E-21 3.9E-26 122.1 9.5 78 1-84 1-78 (88)
3 1ndd_A NEDD8, protein (ubiquit 99.9 2.9E-21 9.8E-26 115.6 9.8 76 1-82 1-76 (76)
4 3a9j_A Ubiquitin; protein comp 99.9 5.3E-21 1.8E-25 114.4 10.4 76 1-82 1-76 (76)
5 3plu_A Ubiquitin-like modifier 99.9 2.8E-21 9.5E-26 122.4 9.4 71 1-77 22-92 (93)
6 2kk8_A Uncharacterized protein 99.8 3.1E-21 1.1E-25 119.7 7.9 73 1-79 11-84 (84)
7 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 9.7E-21 3.3E-25 118.8 10.2 78 1-84 2-79 (96)
8 3n3k_B Ubiquitin; hydrolase, p 99.8 6.6E-21 2.3E-25 116.6 8.8 77 1-83 4-80 (85)
9 4hcn_B Polyubiquitin, ubiquiti 99.8 7.8E-21 2.7E-25 120.4 9.3 76 1-82 23-98 (98)
10 4dwf_A HLA-B-associated transc 99.8 9.2E-21 3.1E-25 117.8 9.3 77 1-84 6-82 (90)
11 3dbh_I NEDD8; cell cycle, acti 99.8 5E-21 1.7E-25 118.0 8.0 76 1-82 13-88 (88)
12 3v6c_B Ubiquitin; structural g 99.8 7.4E-21 2.5E-25 118.8 8.9 73 1-79 18-90 (91)
13 2faz_A Ubiquitin-like containi 99.8 1.2E-20 3.9E-25 114.3 9.3 74 1-80 3-78 (78)
14 1sif_A Ubiquitin; hydrophobic 99.8 1E-20 3.6E-25 117.7 9.2 76 1-82 10-85 (88)
15 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.2E-20 4.3E-25 115.3 9.1 76 1-82 4-79 (85)
16 2hj8_A Interferon-induced 17 k 99.8 8.2E-21 2.8E-25 118.1 8.4 77 1-83 5-81 (88)
17 1uel_A HHR23B, UV excision rep 99.8 3E-20 1E-24 117.1 10.8 79 1-85 1-82 (95)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.6E-20 5.5E-25 115.7 8.6 76 1-82 8-83 (87)
19 1yx5_B Ubiquitin; proteasome, 99.8 5.3E-20 1.8E-24 116.3 10.4 76 1-82 1-76 (98)
20 1wy8_A NP95-like ring finger p 99.8 3.8E-20 1.3E-24 114.6 9.5 77 1-83 8-86 (89)
21 4eew_A Large proline-rich prot 99.8 3.1E-20 1.1E-24 114.9 8.9 71 1-78 18-88 (88)
22 2uyz_B Small ubiquitin-related 99.8 1.8E-20 6.3E-25 113.8 7.7 76 1-82 4-79 (79)
23 2wyq_A HHR23A, UV excision rep 99.8 5.1E-20 1.7E-24 112.9 9.7 74 1-80 6-82 (85)
24 2dzi_A Ubiquitin-like protein 99.8 2.3E-20 7.8E-25 113.3 7.9 74 1-80 8-81 (81)
25 3m62_B UV excision repair prot 99.8 2.1E-20 7.3E-25 120.2 7.7 75 1-81 2-76 (106)
26 3vdz_A Ubiquitin-40S ribosomal 99.8 6.7E-20 2.3E-24 118.8 9.7 76 1-82 36-111 (111)
27 1uh6_A Ubiquitin-like 5; beta- 99.8 2E-20 6.9E-25 120.0 6.6 71 1-77 29-99 (100)
28 2kan_A Uncharacterized protein 99.8 5.5E-20 1.9E-24 116.1 8.4 76 1-83 16-92 (94)
29 2bwf_A Ubiquitin-like protein 99.8 1.2E-19 4.2E-24 109.1 9.5 72 1-79 5-76 (77)
30 3u5c_f 40S ribosomal protein S 99.8 1E-21 3.4E-26 134.2 -0.3 91 1-97 1-92 (152)
31 3l0w_B Monoubiquitinated proli 99.8 2.3E-19 7.9E-24 124.0 11.5 80 1-86 1-80 (169)
32 2lxa_A Ubiquitin-like protein 99.8 3.1E-20 1.1E-24 116.2 6.4 73 1-79 2-78 (87)
33 3b1l_X E3 ubiquitin-protein li 99.7 1.2E-21 4.2E-26 118.0 0.0 75 1-81 1-75 (76)
34 4a20_A Ubiquitin-like protein 99.8 9.4E-20 3.2E-24 116.3 8.7 74 1-80 20-97 (98)
35 1wyw_B Ubiquitin-like protein 99.8 8E-20 2.7E-24 115.7 8.2 76 1-82 22-97 (97)
36 2l7r_A Ubiquitin-like protein 99.8 9.2E-20 3.1E-24 114.7 8.0 74 1-82 20-93 (93)
37 3rt3_B Ubiquitin-like protein 99.8 1.4E-19 4.9E-24 122.5 9.6 78 1-84 82-159 (159)
38 1ttn_A DC-UBP, dendritic cell- 99.8 1.4E-19 4.9E-24 116.2 8.2 76 1-82 24-99 (106)
39 2ojr_A Ubiquitin; lanthide-bin 99.8 3.5E-19 1.2E-23 115.2 9.8 76 1-82 36-111 (111)
40 4ajy_B Transcription elongatio 99.8 2.8E-19 9.7E-24 117.5 9.0 82 1-89 1-90 (118)
41 1yqb_A Ubiquilin 3; structural 99.8 2.9E-19 1E-23 113.9 8.6 76 1-83 23-98 (100)
42 1wgd_A Homocysteine-responsive 99.8 2E-19 7E-24 112.7 7.6 77 1-83 8-90 (93)
43 2klc_A Ubiquilin-1; ubiquitin- 99.8 5.7E-19 1.9E-23 112.7 9.5 75 1-82 26-100 (101)
44 2fnj_B Transcription elongatio 99.8 2.1E-19 7E-24 118.3 7.6 82 1-89 1-90 (118)
45 1we6_A Splicing factor, putati 99.8 5.6E-19 1.9E-23 114.2 8.3 76 1-82 28-107 (111)
46 2kdi_A Ubiquitin, vacuolar pro 99.8 1.5E-18 5.2E-23 113.0 10.3 77 1-83 10-86 (114)
47 3q3f_A Ribonuclease/ubiquitin 99.8 4.5E-19 1.5E-23 124.8 8.0 79 1-85 106-184 (189)
48 1wx8_A Riken cDNA 4931431F19; 99.8 2.6E-19 9E-24 112.5 5.7 76 1-83 18-93 (96)
49 1v5o_A 1700011N24RIK protein; 99.8 5.7E-19 1.9E-23 112.7 7.2 79 1-85 8-91 (102)
50 1wx7_A Ubiquilin 3; ubiquitin- 99.8 8.4E-19 2.9E-23 112.4 7.9 77 1-84 18-94 (106)
51 3u5e_m 60S ribosomal protein L 99.8 2.1E-20 7.2E-25 123.8 0.0 77 1-83 1-77 (128)
52 3rt3_B Ubiquitin-like protein 99.8 3.6E-18 1.2E-22 115.6 11.1 73 1-79 3-77 (159)
53 3u30_A Ubiquitin, linear DI-ub 99.8 2.2E-18 7.6E-23 118.3 9.9 76 1-82 21-96 (172)
54 1v2y_A 3300001G02RIK protein; 99.8 5E-19 1.7E-23 114.3 5.6 76 1-82 8-99 (105)
55 1j8c_A Ubiquitin-like protein 99.8 2E-18 7E-23 114.2 8.6 76 1-83 33-108 (125)
56 3b08_A Polyubiquitin-C, ubiqui 99.8 5.6E-18 1.9E-22 112.9 10.3 76 1-82 1-76 (152)
57 4dbg_A Ranbp-type and C3HC4-ty 99.8 4.2E-18 1.4E-22 110.0 9.1 73 1-79 25-100 (105)
58 3b08_A Polyubiquitin-C, ubiqui 99.7 8.2E-18 2.8E-22 112.1 9.9 76 1-82 77-152 (152)
59 3m63_B Ubiquitin domain-contai 99.7 6.1E-19 2.1E-23 112.7 3.9 72 1-79 29-100 (101)
60 1v5t_A 8430435I17RIK protein; 99.7 2.3E-18 7.8E-23 107.6 6.5 73 1-80 8-84 (90)
61 1se9_A Ubiquitin family; ubiqu 99.7 7.3E-18 2.5E-22 112.0 9.2 89 1-96 17-119 (126)
62 1wju_A NEDD8 ultimate buster-1 99.7 5.3E-18 1.8E-22 108.7 7.6 72 3-81 18-93 (100)
63 3u30_A Ubiquitin, linear DI-ub 99.7 6.3E-18 2.2E-22 116.0 7.9 76 1-82 97-172 (172)
64 1wia_A Hypothetical ubiquitin- 99.7 8.1E-18 2.8E-22 105.6 7.7 74 1-83 8-82 (95)
65 1wgg_A Ubiquitin carboxyl-term 99.7 4.8E-18 1.6E-22 107.6 6.5 72 1-80 8-80 (96)
66 2kd0_A LRR repeats and ubiquit 99.7 1.4E-17 4.7E-22 103.2 8.2 70 3-78 14-83 (85)
67 1wxv_A BAG-family molecular ch 99.7 1.1E-17 3.8E-22 104.4 7.5 75 1-82 8-88 (92)
68 1we7_A SF3A1 protein; structur 99.7 1.5E-17 5E-22 108.1 8.2 75 2-82 27-111 (115)
69 1x1m_A Ubiquitin-like protein 99.7 1.6E-17 5.5E-22 106.8 8.0 75 1-81 13-102 (107)
70 2gow_A HCG-1 protein, ubiquiti 99.7 3.1E-17 1.1E-21 108.8 9.0 77 1-83 18-104 (125)
71 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.1E-17 1.4E-21 107.0 9.3 75 1-81 17-101 (116)
72 2dzm_A FAS-associated factor 1 99.7 1.4E-17 4.8E-22 106.6 6.8 79 1-85 9-88 (100)
73 1v86_A DNA segment, CHR 7, way 99.7 1.1E-17 3.6E-22 105.7 5.3 73 1-81 18-90 (95)
74 2kdb_A Homocysteine-responsive 99.7 1.6E-17 5.5E-22 106.1 5.1 70 1-76 24-99 (99)
75 2dzj_A Synaptic glycoprotein S 99.7 4.3E-17 1.5E-21 101.9 6.4 69 1-75 11-85 (88)
76 2kzr_A Ubiquitin thioesterase 99.7 1.2E-16 4.2E-21 98.9 6.8 75 1-78 1-77 (86)
77 3ai5_A Yeast enhanced green fl 99.7 1.9E-16 6.5E-21 118.4 8.7 73 1-79 234-306 (307)
78 2daf_A FLJ35834 protein; hypot 99.7 2.4E-16 8.3E-21 103.3 8.0 74 2-81 17-91 (118)
79 2xzm_9 RPS31E; ribosome, trans 99.7 6.1E-18 2.1E-22 119.0 0.1 84 1-95 1-85 (189)
80 2kjr_A CG11242; UBL, ubiquitin 99.7 3.3E-16 1.1E-20 99.2 7.9 75 2-76 17-93 (95)
81 1wf9_A NPL4 family protein; be 99.7 1.9E-16 6.4E-21 101.9 6.3 78 1-79 8-95 (107)
82 1oqy_A HHR23A, UV excision rep 99.6 7E-16 2.4E-20 117.7 8.6 75 1-81 8-86 (368)
83 4b6w_A Tubulin-specific chaper 99.6 2.2E-15 7.6E-20 93.8 8.6 78 3-80 5-85 (86)
84 2kj6_A Tubulin folding cofacto 99.6 2.1E-15 7.3E-20 95.9 7.7 76 2-77 16-94 (97)
85 1v6e_A Cytoskeleton-associated 99.6 3.6E-15 1.2E-19 93.8 7.7 78 2-79 9-88 (95)
86 1t0y_A Tubulin folding cofacto 99.6 1.6E-14 5.6E-19 94.8 8.9 79 2-80 8-88 (122)
87 3shq_A UBLCP1; phosphatase, hy 99.5 1.1E-14 3.7E-19 109.3 8.0 74 1-81 6-82 (320)
88 2io1_B Small ubiquitin-related 99.5 7.7E-14 2.6E-18 88.1 8.6 77 1-83 8-84 (94)
89 2io0_B Small ubiquitin-related 99.5 4.9E-13 1.7E-17 84.0 9.2 78 1-84 6-83 (91)
90 1wjn_A Tubulin-folding protein 99.4 8.4E-13 2.9E-17 83.1 9.0 79 2-80 11-94 (97)
91 1wm3_A Ubiquitin-like protein 99.4 5.8E-13 2E-17 79.9 7.9 71 1-77 2-72 (72)
92 2d07_B Ubiquitin-like protein 99.4 1.3E-12 4.4E-17 82.2 8.9 75 1-81 18-92 (93)
93 1wz0_A Ubiquitin-like protein 99.4 1.1E-12 3.7E-17 84.3 8.1 78 1-84 25-102 (104)
94 3a4r_A Nfatc2-interacting prot 99.4 3.5E-12 1.2E-16 77.9 7.9 70 1-76 8-78 (79)
95 2eke_C Ubiquitin-like protein 99.3 6.2E-12 2.1E-16 81.1 8.2 74 1-81 32-105 (106)
96 2k8h_A Small ubiquitin protein 99.3 3.1E-12 1E-16 83.0 6.2 77 1-83 27-103 (110)
97 2pjh_A Protein NPL4, nuclear p 99.3 1.6E-12 5.4E-17 79.8 3.5 74 1-76 5-78 (80)
98 3kyd_D Small ubiquitin-related 99.1 1.4E-09 5E-14 70.9 9.3 74 1-80 41-114 (115)
99 3pge_A SUMO-modified prolifera 98.9 8.3E-09 2.8E-13 73.0 9.8 79 2-87 31-109 (200)
100 3tix_A Ubiquitin-like protein 98.7 2.2E-08 7.5E-13 70.6 6.7 76 2-84 59-134 (207)
101 3v7o_A Minor nucleoprotein VP3 98.6 1.6E-09 5.4E-14 77.4 -3.3 84 1-91 22-105 (227)
102 3goe_A DNA repair protein RAD6 98.6 6.4E-07 2.2E-11 54.7 8.7 69 3-77 12-81 (82)
103 4efo_A Serine/threonine-protei 98.5 5.1E-07 1.7E-11 56.8 7.6 64 9-76 22-86 (94)
104 2jxx_A Nfatc2-interacting prot 98.4 1E-06 3.6E-11 55.6 7.7 69 2-76 27-96 (97)
105 2kc2_A Talin-1, F1; FERM, adhe 98.3 1.5E-06 5.1E-11 57.5 5.3 75 3-77 14-121 (128)
106 3uf8_A Ubiquitin-like protein 98.2 6.6E-06 2.2E-10 58.0 8.1 75 2-83 23-97 (209)
107 2al3_A TUG long isoform; TUG U 98.2 6.9E-06 2.4E-10 51.2 6.7 73 1-79 10-82 (90)
108 3qx1_A FAS-associated factor 1 98.1 4.3E-05 1.5E-09 46.4 9.4 71 2-77 9-82 (84)
109 3ix6_A TS, tsase, thymidylate 98.1 4.2E-07 1.4E-11 69.2 0.2 74 2-82 23-96 (360)
110 2l76_A Nfatc2-interacting prot 98.1 2E-05 6.9E-10 49.6 7.7 70 2-78 23-92 (95)
111 2bps_A YUKD protein; ubiquitin 98.1 1.2E-05 4.1E-10 49.2 6.1 68 2-75 6-80 (81)
112 4da1_A Protein phosphatase 1K, 97.8 2.8E-06 9.6E-11 64.4 0.0 74 3-83 33-106 (389)
113 2dzk_A UBX domain-containing p 97.8 0.00033 1.1E-08 44.6 9.3 73 2-78 15-90 (109)
114 1wj4_A KIAA0794 protein; UBX d 97.6 0.00056 1.9E-08 44.6 8.4 71 2-77 45-118 (124)
115 2cr5_A Reproduction 8; UBX dom 97.4 0.0017 5.7E-08 41.2 9.3 72 2-78 25-98 (109)
116 1s3s_G P47 protein; AAA ATPase 97.1 0.0019 6.6E-08 42.1 7.0 69 2-74 54-124 (127)
117 2l32_A Small archaeal modifier 96.8 0.0069 2.4E-07 35.9 6.8 61 1-77 1-61 (74)
118 2daj_A KIAA0977 protein, COBL- 96.6 0.0067 2.3E-07 37.4 6.0 65 2-69 12-76 (91)
119 3jyu_A Ubiquitin carboxyl-term 96.6 0.017 5.9E-07 40.9 8.9 68 13-82 154-224 (231)
120 1ryj_A Unknown; beta/alpha pro 96.3 0.051 1.7E-06 31.4 8.5 64 1-80 5-68 (70)
121 3ivf_A Talin-1; FERM domain, c 96.3 0.046 1.6E-06 40.7 10.2 73 2-76 5-82 (371)
122 4a3p_A Ubiquitin carboxyl-term 96.2 0.012 4.2E-07 41.3 6.3 67 13-82 142-212 (217)
123 3rpf_C Molybdopterin convertin 96.2 0.039 1.3E-06 32.1 7.5 70 1-81 1-73 (74)
124 1oey_A P67-PHOX, neutrophil cy 95.7 0.049 1.7E-06 33.1 6.6 50 1-52 6-55 (83)
125 1vjk_A Molybdopterin convertin 95.0 0.32 1.1E-05 29.6 9.0 68 1-79 10-95 (98)
126 3dwg_C 9.5 kDa culture filtrat 94.1 0.28 9.6E-06 29.4 6.8 73 1-81 1-92 (93)
127 3qa8_A MGC80376 protein; kinas 94.0 0.058 2E-06 43.8 4.5 51 10-65 321-371 (676)
128 2kvr_A Ubiquitin carboxyl-term 93.9 0.079 2.7E-06 34.6 4.4 33 13-45 58-90 (130)
129 4eut_A Serine/threonine-protei 93.9 0.32 1.1E-05 35.8 8.1 69 10-83 321-390 (396)
130 2juo_A GA-binding protein alph 93.3 0.27 9.4E-06 30.0 5.7 71 14-90 6-78 (89)
131 1tyg_B YJBS; alpha beta barrel 93.1 0.17 5.7E-06 30.8 4.5 55 15-80 30-85 (87)
132 3ivf_A Talin-1; FERM domain, c 93.0 1 3.5E-05 33.3 9.7 77 2-78 87-167 (371)
133 1ef1_A Moesin; membrane, FERM 92.7 0.8 2.7E-05 32.6 8.5 76 1-78 2-78 (294)
134 1wgk_A Riken cDNA 2900073H19 p 92.5 0.76 2.6E-05 29.1 7.2 80 1-82 12-108 (114)
135 1h4r_A Merlin; FERM, neurofibr 92.2 0.79 2.7E-05 33.1 7.9 74 2-78 24-98 (314)
136 2qjl_A URM1, ubiquitin-related 91.8 1.4 4.6E-05 26.8 7.8 72 1-79 2-96 (99)
137 3po0_A Small archaeal modifier 91.7 1.1 3.9E-05 26.3 7.0 60 11-81 18-88 (89)
138 2r2o_A Plexin-B1; effector dom 91.4 1.2 4.2E-05 29.4 7.5 68 11-80 41-130 (138)
139 4e74_A Plexin-A4; RBD, structu 91.3 1.1 3.8E-05 28.7 7.0 67 11-79 27-115 (117)
140 1f0z_A THis protein; ubiquitin 91.0 0.23 7.9E-06 28.1 3.3 58 9-79 6-63 (66)
141 2i1j_A Moesin; FERM, coiled-co 90.2 1.6 5.4E-05 34.7 8.4 76 1-78 5-81 (575)
142 4e71_A Plexin-B2, MM1; transme 90.1 2.5 8.4E-05 26.9 7.9 64 10-77 23-109 (111)
143 2kl0_A Putative thiamin biosyn 89.9 0.4 1.4E-05 28.0 3.7 64 1-81 1-64 (73)
144 3h6n_A Plexin-D1; structural g 89.9 2.8 9.6E-05 27.2 8.7 67 10-78 16-104 (127)
145 2k5p_A THis protein, thiamine- 89.6 0.37 1.3E-05 28.5 3.4 69 1-85 1-72 (78)
146 3onh_A Ubiquitin-activating en 89.5 1.3 4.3E-05 28.9 6.1 58 14-77 9-78 (127)
147 2ylm_A Ubiquitin carboxyl-term 89.1 0.54 1.9E-05 37.0 5.0 33 13-45 38-70 (530)
148 1fm0_D Molybdopterin convertin 88.8 1.3 4.5E-05 25.4 5.5 56 12-79 18-78 (81)
149 2k9x_A Tburm1, uncharacterized 88.5 0.58 2E-05 29.5 3.9 81 1-85 5-104 (110)
150 2cu3_A Unknown function protei 87.6 1.3 4.5E-05 24.7 4.8 58 9-80 5-62 (64)
151 2kmc_A Fermitin family homolog 87.2 3.3 0.00011 25.9 6.7 73 2-77 21-98 (102)
152 2q5w_D Molybdopterin convertin 87.1 1.4 4.7E-05 25.1 4.8 57 11-79 16-74 (77)
153 2l52_A Methanosarcina acetivor 86.9 3.6 0.00012 24.9 8.2 70 1-79 4-96 (99)
154 3qij_A Protein 4.1; cytoskelet 86.9 1.3 4.3E-05 32.0 5.5 75 1-76 18-93 (296)
155 2kmm_A Guanosine-3',5'-BIS(dip 86.9 2.1 7.2E-05 24.0 5.4 62 1-77 1-62 (73)
156 1y8x_B Ubiquitin-activating en 85.8 0.71 2.4E-05 28.7 3.1 60 12-76 6-82 (98)
157 1wgr_A Growth factor receptor- 84.9 2.6 8.7E-05 26.2 5.4 37 3-39 12-48 (100)
158 2hj1_A Hypothetical protein; s 84.8 3.1 0.00011 25.6 5.7 60 12-82 27-89 (97)
159 1q1o_A Cell division control p 84.5 2.1 7.3E-05 26.6 4.9 36 2-37 7-49 (98)
160 1vd2_A Protein kinase C, IOTA 83.8 5.4 0.00018 24.2 7.3 46 3-48 7-54 (89)
161 2g1e_A Hypothetical protein TA 82.3 5.4 0.00018 23.1 7.2 59 14-79 18-87 (90)
162 3ig3_A Plxna3 protein; plexin 81.0 13 0.00044 30.1 9.2 67 11-79 247-335 (627)
163 2c7h_A RBBP6, retinoblastoma-b 80.3 7.5 0.00026 23.5 6.8 46 2-47 8-56 (86)
164 3u52_E Phenol hydroxylase comp 79.8 6.8 0.00023 25.1 6.0 63 13-81 40-112 (119)
165 3au4_A Myosin-X; protein-prote 77.8 4.3 0.00015 31.6 5.6 46 1-46 217-264 (555)
166 1wgy_A RAP guanine nucleotide 77.8 10 0.00035 23.7 9.0 69 7-79 16-87 (104)
167 1rws_A Hypothetical protein PF 77.5 0.42 1.5E-05 27.9 -0.2 50 14-78 24-73 (77)
168 3hm6_X Plexin-B1; structural g 77.3 14 0.00049 30.0 8.5 67 11-79 274-362 (644)
169 3r8s_T 50S ribosomal protein L 75.8 8.3 0.00028 23.5 5.4 38 11-48 28-66 (93)
170 1vq8_S 50S ribosomal protein L 74.2 4.5 0.00015 24.4 3.8 34 10-43 22-55 (85)
171 3kuz_A Plexin-C1; structural g 74.2 15 0.00051 23.7 6.6 66 11-76 39-124 (126)
172 3pvl_A Myosin VIIA isoform 1; 73.2 6.1 0.00021 31.8 5.5 45 1-45 264-309 (655)
173 1v8c_A MOAD related protein; r 73.1 5.1 0.00017 26.8 4.3 63 14-84 17-89 (168)
174 2zjr_Q 50S ribosomal protein L 72.1 4.8 0.00016 24.7 3.7 36 13-48 25-61 (95)
175 1ip9_A BEM1 protein; ubiquitin 72.1 11 0.00039 22.7 5.3 44 2-48 14-58 (85)
176 3tve_T 50S ribosomal protein L 69.8 10 0.00034 23.1 4.8 38 11-48 22-60 (92)
177 3tca_A Amyloid beta A4 precurs 68.8 11 0.00037 26.2 5.5 37 3-39 37-73 (291)
178 3j21_T 50S ribosomal protein L 68.8 13 0.00043 22.4 5.0 35 10-44 23-57 (86)
179 2cu1_A Mitogen-activated prote 67.7 12 0.00042 23.3 4.8 44 2-48 8-52 (103)
180 3ge3_C Toluene-4-monooxygenase 66.9 18 0.00062 21.7 8.2 62 12-77 16-82 (84)
181 2inc_C TOUB protein; DIIRON, 4 66.6 18 0.00063 21.7 8.5 63 12-78 14-82 (83)
182 2ktr_A Sequestosome-1; autopha 65.6 23 0.00079 22.5 6.5 38 11-48 36-85 (117)
183 4gmv_A RAS-associated and plec 65.4 17 0.00058 26.3 6.0 37 3-39 34-70 (281)
184 2ylm_A Ubiquitin carboxyl-term 64.0 3.3 0.00011 32.6 2.0 66 15-80 151-219 (530)
185 2lgx_A Fermitin family homolog 60.0 2 6.9E-05 27.3 0.2 63 11-76 36-100 (112)
186 3hvz_A Uncharacterized protein 58.2 24 0.00083 20.5 4.8 61 2-77 7-67 (78)
187 1rm6_C 4-hydroxybenzoyl-COA re 56.9 15 0.0005 24.3 4.1 31 1-31 1-32 (161)
188 1wfy_A Regulator of G-protein 56.8 25 0.00085 22.0 4.8 67 8-81 25-91 (104)
189 3m95_A Autophagy related prote 55.9 15 0.00053 23.5 3.9 59 14-79 56-119 (125)
190 2v1y_A Phosphatidylinositol-4, 55.9 31 0.0011 21.5 5.2 31 3-33 22-52 (108)
191 3hk0_A Growth factor receptor- 55.6 28 0.00097 24.7 5.6 37 3-39 11-47 (256)
192 2zkr_s 60S ribosomal protein L 54.5 23 0.00079 23.6 4.7 33 11-43 94-126 (156)
193 3chb_D Cholera toxin; toxin/re 54.4 14 0.00049 22.4 3.3 42 3-44 39-89 (104)
194 2r2q_A Gamma-aminobutyric acid 53.2 23 0.0008 21.9 4.4 58 14-77 47-108 (110)
195 3h9d_A ATG8, microtubule-assoc 52.7 15 0.00051 23.3 3.4 58 15-79 52-114 (119)
196 4dxa_B KREV interaction trappe 52.2 20 0.0007 25.7 4.5 43 1-47 6-53 (322)
197 3u5e_X 60S ribosomal protein L 51.7 27 0.00094 22.9 4.6 33 11-43 80-112 (142)
198 2dhz_A RAP guanine nucleotide 51.6 30 0.001 22.1 4.7 64 9-78 18-92 (120)
199 4a17_R RPL23A, 60S ribosomal p 51.6 29 0.001 23.0 4.8 34 10-43 87-120 (150)
200 3lxf_A Ferredoxin; iron, iron- 50.6 23 0.00079 21.3 4.0 27 2-28 2-28 (104)
201 3rui_B Autophagy-related prote 49.7 28 0.00095 22.0 4.3 59 15-79 51-113 (118)
202 2kkc_A Sequestosome-1; P62, PB 49.0 44 0.0015 20.5 7.2 48 1-48 4-70 (102)
203 1eo6_A GATE-16, golgi-associat 47.9 30 0.001 21.6 4.3 60 15-80 49-112 (117)
204 1wmh_B Partitioning defective- 46.9 45 0.0015 20.0 5.1 46 3-48 7-55 (86)
205 2eel_A Cell death activator CI 46.9 46 0.0016 20.1 5.3 49 21-78 28-78 (91)
206 1j0g_A Hypothetical protein 18 46.3 46 0.0016 20.0 5.7 61 13-78 26-86 (92)
207 1n62_A Carbon monoxide dehydro 46.2 23 0.00079 23.6 3.7 27 2-29 5-31 (166)
208 2zjd_A Microtubule-associated 45.0 32 0.0011 22.1 4.1 60 14-79 56-120 (130)
209 3iz5_X 60S ribosomal protein L 44.4 30 0.001 23.0 4.0 34 11-44 90-123 (152)
210 1c1y_B Proto-onkogene serine/t 43.7 48 0.0017 19.5 5.3 42 3-44 4-45 (77)
211 1wxm_A A-RAF proto-oncogene se 43.4 52 0.0018 19.8 4.8 42 3-44 10-51 (86)
212 3hrd_D Nicotinate dehydrogenas 42.9 29 0.001 23.0 3.8 26 2-28 5-30 (160)
213 1ltr_D ETB-R2, heat-labIle ent 42.6 19 0.00065 22.1 2.6 42 3-44 38-88 (113)
214 1ffv_A CUTS, iron-sulfur prote 42.5 29 0.00098 23.0 3.7 27 2-29 5-31 (163)
215 4dxe_H ACP, acyl carrier prote 41.4 35 0.0012 20.5 3.7 27 13-39 18-44 (101)
216 1t3q_A Quinoline 2-oxidoreduct 41.3 36 0.0012 22.4 4.1 28 1-29 10-37 (168)
217 2al6_A Focal adhesion kinase 1 40.2 26 0.0009 25.8 3.6 60 5-64 12-76 (375)
218 4eku_A Protein-tyrosine kinase 39.9 54 0.0019 24.6 5.3 57 8-64 35-96 (392)
219 3bbo_V Ribosomal protein L23; 39.4 11 0.00039 26.1 1.3 33 10-42 131-163 (198)
220 2jrh_A Mitogen-activated prote 39.1 65 0.0022 19.6 4.7 43 3-48 5-48 (94)
221 2nvu_B Maltose binding protein 39.0 55 0.0019 26.4 5.5 65 12-76 713-789 (805)
222 1f2r_I Inhibitor of caspase-ac 37.5 71 0.0024 19.6 5.7 48 21-76 37-88 (100)
223 2c60_A Human mitogen-activated 36.0 79 0.0027 19.7 4.9 37 3-39 32-69 (111)
224 2bt6_A Adrenodoxin 1; rutheniu 35.7 50 0.0017 19.6 3.8 26 2-27 8-33 (108)
225 2i1s_A Hypothetical protein; m 35.1 84 0.0029 20.9 5.2 39 2-40 10-51 (188)
226 1pqs_A Cell division control p 34.3 32 0.0011 20.0 2.6 26 12-37 3-28 (77)
227 3w1s_C Ubiquitin-like protein 34.1 76 0.0026 19.0 5.6 68 2-79 8-86 (91)
228 2npt_B Mitogen-activated prote 33.5 85 0.0029 19.3 4.7 37 3-39 21-58 (100)
229 4gdk_A Ubiquitin-like protein 33.2 61 0.0021 19.3 3.8 59 13-79 22-86 (91)
230 1b44_D ETB-POL, protein (B-POL 33.0 25 0.00086 22.1 2.0 44 3-46 38-90 (129)
231 2y5c_A Adrenodoxin-like protei 32.6 60 0.002 19.4 3.8 26 2-27 7-32 (109)
232 2wlb_A ETP1-FD, electron trans 31.9 79 0.0027 18.5 4.2 27 2-28 5-31 (103)
233 1hmj_A RPB5, protein (subunit 30.5 47 0.0016 19.6 2.9 43 27-80 20-62 (78)
234 2l05_A Serine/threonine-protei 30.4 95 0.0033 18.9 5.7 43 2-44 19-61 (95)
235 1uwm_A Ferredoxin VI, FDVI; el 30.1 84 0.0029 18.5 4.2 26 2-27 2-27 (106)
236 1xlq_A Putidaredoxin, PDX; [2F 29.3 79 0.0027 18.6 3.9 26 2-27 2-27 (106)
237 1jq4_A Methane monooxygenase c 28.1 83 0.0029 18.2 3.8 28 2-29 6-33 (98)
238 3hui_A Ferredoxin; cytochrome 27.7 93 0.0032 19.4 4.2 26 2-27 23-48 (126)
239 2ns5_A Partitioning-defective 27.6 1E+02 0.0035 18.4 8.2 69 1-77 3-81 (85)
240 1iue_A Ferredoxin; electron tr 27.2 94 0.0032 18.0 4.0 28 1-28 1-29 (98)
241 3f5r_A FACT complex subunit PO 26.9 62 0.0021 22.2 3.4 47 2-48 86-132 (191)
242 4a6q_A Histone deacetylase com 26.8 53 0.0018 21.5 2.9 69 13-81 56-141 (143)
243 3djh_A Macrophage migration in 24.8 79 0.0027 18.9 3.4 26 23-48 76-101 (114)
244 1wz3_A Autophagy 12B, ATG12B, 24.1 81 0.0028 19.0 3.2 58 13-79 30-91 (96)
245 1dd4_C 50S ribosomal protein L 23.9 69 0.0024 16.3 2.5 16 24-39 19-34 (40)
246 1frr_A Ferredoxin I; electron 23.7 1.1E+02 0.0037 17.4 3.8 26 2-28 3-28 (95)
247 1a70_A Ferredoxin; iron-sulfur 23.7 1.1E+02 0.0039 17.6 4.0 29 1-29 1-30 (97)
248 1awd_A Ferredoxin; electron tr 23.3 1.1E+02 0.0038 17.5 3.7 27 2-29 2-28 (94)
249 3kan_A D-dopachrome tautomeras 23.2 87 0.003 19.0 3.3 25 23-47 77-101 (117)
250 3ny5_A Serine/threonine-protei 22.3 1.4E+02 0.0049 18.2 5.3 44 3-46 16-59 (96)
251 4dh4_A MIF; trimer, isomerase; 21.7 99 0.0034 18.4 3.4 25 23-47 77-101 (114)
252 2w57_A Ferric uptake regulatio 21.6 1E+02 0.0036 19.4 3.6 39 7-48 94-132 (150)
253 1rrb_A RAF-1 RBD, RAF proto-on 21.5 1.6E+02 0.0053 18.4 4.8 42 3-44 21-62 (107)
254 2xig_A Ferric uptake regulatio 21.0 1.1E+02 0.0036 19.4 3.5 39 7-48 103-141 (150)
255 1mzb_A Ferric uptake regulatio 20.9 90 0.0031 19.3 3.1 39 7-48 95-133 (136)
256 1tt5_B Ubiquitin-activating en 20.7 44 0.0015 25.5 1.8 63 14-76 344-418 (434)
257 3fwt_A Macrophage migration in 20.6 1E+02 0.0035 19.2 3.4 26 23-48 98-123 (133)
258 3fwu_A Macrophage migration in 20.5 96 0.0033 19.4 3.2 25 23-47 98-122 (133)
259 2k5l_A FEOA; structure, NESG, 20.2 1E+02 0.0035 17.4 3.0 20 61-80 27-46 (81)
No 1
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=121.16 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~------~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGK------PLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCE------ECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
|
T Consensus 79 G 79 (79)
T 3phx_B 79 G 79 (79)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.87 E-value=1.1e-21 Score=122.12 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK------QMNDEKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTSBTTTTTCCTTCEEEEECBCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCe------ECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
++..
T Consensus 75 Gg~~ 78 (88)
T 4fbj_B 75 GGGG 78 (88)
T ss_dssp ----
T ss_pred CCCC
Confidence 7543
No 3
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.86 E-value=2.9e-21 Score=115.62 Aligned_cols=76 Identities=26% Similarity=0.351 Sum_probs=72.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~------~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK------QMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 75 GG 76 (76)
T 1ndd_A 75 GG 76 (76)
T ss_dssp --
T ss_pred CC
Confidence 63
No 4
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.86 E-value=5.3e-21 Score=114.44 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~------~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCe------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 75 GG 76 (76)
T 3a9j_A 75 GG 76 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 5
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.86 E-value=2.8e-21 Score=122.40 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+.++|+++.+++++++||.+||++|+++.|+|+++|+|.|+|+ .|+|+.+|++|+|++|++|+++.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk------~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGS------VLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCE------EccCcCCHHHcCCCCCCEEEEEe
Confidence 689999999999999999999999999999999999999999999999 99999999999999999999985
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=3.1e-21 Score=119.65 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCcc-CCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQ-DHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~-L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+..+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+ . |+|+.+|++|||++|++|++.+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGI------VILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCE------EecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 899999999999999999999999999999999999999999999999 8 999999999999999999998753
No 7
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.85 E-value=9.7e-21 Score=118.79 Aligned_cols=78 Identities=24% Similarity=0.391 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~------~L~d~~tL~~~~i~~~~~i~l~~r~~ 75 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 75 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
++..
T Consensus 76 gG~~ 79 (96)
T 3k9o_B 76 GYAD 79 (96)
T ss_dssp C---
T ss_pred CCCc
Confidence 7654
No 8
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=6.6e-21 Score=116.64 Aligned_cols=77 Identities=27% Similarity=0.490 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+ .|+|+.+|++|+|+++++|++.+++.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~------~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBE------ECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCe------ECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 78 GG~ 80 (85)
T 3n3k_B 78 GGG 80 (85)
T ss_dssp ---
T ss_pred CCC
Confidence 753
No 9
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.8e-21 Score=120.42 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCE------ECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 97 GG 98 (98)
T 4hcn_B 97 GG 98 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 10
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.84 E-value=9.2e-21 Score=117.78 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|+| +|++|+++++.+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk------~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR------VLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCe------ECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 899999999999999999999999999999999999999999999999 9999999999999 899999999987
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
+...
T Consensus 79 ~~~~ 82 (90)
T 4dwf_A 79 PQTH 82 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 6544
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.84 E-value=5e-21 Score=118.02 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~------~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGK------QMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTE------ECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCe------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 799999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 87 GG 88 (88)
T 3dbh_I 87 GG 88 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.84 E-value=7.4e-21 Score=118.76 Aligned_cols=73 Identities=27% Similarity=0.442 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk------~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCe------ECCCcCcHHHCCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999999999999999 9999999999999999999999875
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.2e-20 Score=114.30 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEE-EEE-ecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLF-YIQ-VENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~-~i~-v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|+|+|++.+|+.+ .++ +++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~------~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGK------QMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCE------ECCCCCCHHHcCCCCCCEEEEEEe
Confidence 8999999999884 899 99999999999999999999999999999999 999999999999999999999987
Q ss_pred cC
Q 041108 79 PL 80 (102)
Q Consensus 79 ~~ 80 (102)
++
T Consensus 77 ~~ 78 (78)
T 2faz_A 77 QS 78 (78)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 14
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1e-20 Score=117.75 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++..
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk------~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 84 GG 85 (88)
T 1sif_A 84 GG 85 (88)
T ss_dssp --
T ss_pred CC
Confidence 75
No 15
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.2e-20 Score=115.26 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=73.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.+++++++||.+||++|++++++|+++|+|+|+|+ .|+|+.+|++|+|+++++|++.+++.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~------~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCE------ECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 78 GG 79 (85)
T 3mtn_B 78 GG 79 (85)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 16
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.84 E-value=8.2e-21 Score=118.13 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk------~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGK------PLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSS------CCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 79 gg~ 81 (88)
T 2hj8_A 79 GGL 81 (88)
T ss_dssp ---
T ss_pred CCc
Confidence 644
No 17
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=3e-20 Score=117.12 Aligned_cols=79 Identities=20% Similarity=0.352 Sum_probs=74.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQ---QKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~---~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+..+|+.+.++|++++||.+||++|++. +|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk------~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGK------ILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTE------ECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCE------ECCCcCcHHHCCCCCCCEEEEEE
Confidence 999999999999999999999999999999999 899999999999999 99999999999999999999999
Q ss_pred ecCCCCCc
Q 041108 78 KPLDDGST 85 (102)
Q Consensus 78 ~~~~~~~~ 85 (102)
+.+...+.
T Consensus 75 ~~~~~~~~ 82 (95)
T 1uel_A 75 TKPKAVST 82 (95)
T ss_dssp SSCCCCCC
T ss_pred eCCCCCCC
Confidence 87655443
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.6e-20 Score=115.75 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk------~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQ------VLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTE------ECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCE------EccCCCCHHHCCCCCCCEEEEEEecc
Confidence 799999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 82 GG 83 (87)
T 1wh3_A 82 SG 83 (87)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 19
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.83 E-value=5.3e-20 Score=116.27 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=73.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk------~L~D~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCE------ECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 75 gG 76 (98)
T 1yx5_B 75 GG 76 (98)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=3.8e-20 Score=114.64 Aligned_cols=77 Identities=22% Similarity=0.239 Sum_probs=73.1
Q ss_pred CEEEEEeCCC-cEEEE-EecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTG-TLFYI-QVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g-~~~~i-~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|+|+|+..+| +.+.+ ++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk------~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGK------QLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTE------ECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCe------ECCCCCCHHHCCCCCCCEEEEEEe
Confidence 7999999999 79999 599999999999999999999999999999999 999999999999999999999999
Q ss_pred cCCCC
Q 041108 79 PLDDG 83 (102)
Q Consensus 79 ~~~~~ 83 (102)
..++.
T Consensus 82 ~~gG~ 86 (89)
T 1wy8_A 82 PDSGP 86 (89)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87754
No 21
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=114.94 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=68.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|+|+|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++||| +|++|++..|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR------VLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE------ECCCCCcHHHcCC-CCcEEEEEEC
Confidence 789999999999999999999999999999999999999999999999 9999999999999 8999999875
No 22
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.83 E-value=1.8e-20 Score=113.76 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|+++++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~------~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ------RIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE------EeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 78 GG 79 (79)
T 2uyz_B 78 GG 79 (79)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 23
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.83 E-value=5.1e-20 Score=112.93 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=69.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhh---cCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQ---QKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~---~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGK------ILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTE------ECCTTSBGGGGCCCTTSEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCE------ECcCCCCHHHcCCCCCCEEEEEE
Confidence 789999999999999999999999999999998 899999999999999 99999999999999999999998
Q ss_pred ecC
Q 041108 78 KPL 80 (102)
Q Consensus 78 ~~~ 80 (102)
+.+
T Consensus 80 ~~~ 82 (85)
T 2wyq_A 80 TKT 82 (85)
T ss_dssp C--
T ss_pred cCC
Confidence 764
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.3e-20 Score=113.31 Aligned_cols=74 Identities=28% Similarity=0.419 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk------~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGK------ALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTE------ECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCe------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999998753
No 25
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.1e-20 Score=120.25 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=70.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+||..+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGK------VLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTE------ECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCE------ECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999865
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
.
T Consensus 76 ~ 76 (106)
T 3m62_B 76 K 76 (106)
T ss_dssp -
T ss_pred C
Confidence 4
No 26
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.82 E-value=6.7e-20 Score=118.78 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=72.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.++|++++||.+||.+|++++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCE------ECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 799999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 110 GG 111 (111)
T 3vdz_A 110 GG 111 (111)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 27
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2e-20 Score=119.96 Aligned_cols=71 Identities=25% Similarity=0.390 Sum_probs=69.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+++.|+++.++|++++||.+||++|+++.|+|+++|||+|+|+ .|+|+.+|++|||+++++|+|.+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk------~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYT------IFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCE------ECCCCCCHHHcCCCCCCEEEEEe
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999875
No 28
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=5.5e-20 Score=116.13 Aligned_cols=76 Identities=26% Similarity=0.430 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCC-CccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDE-VPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~-~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+..+| ++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+ .+|++|||++|++|++.+++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGI------ELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTE------EECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCE------ECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 7899999887 8899999999999999999999999999999999999 99999 99999999999999999998
Q ss_pred CCCC
Q 041108 80 LDDG 83 (102)
Q Consensus 80 ~~~~ 83 (102)
.++.
T Consensus 89 ~gg~ 92 (94)
T 2kan_A 89 INRA 92 (94)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=1.2e-19 Score=109.09 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk------~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK------ILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCe------EcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6889999 8999999999999999999999999999999999999999 9999999999999999999998653
No 30
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.81 E-value=1e-21 Score=134.19 Aligned_cols=91 Identities=22% Similarity=0.357 Sum_probs=8.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||.+|++|++.+++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE------EccccCcHHHcCCCCCCEEEEEeecc
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCC-ceeEEEecCCcCC
Q 041108 81 DDGS-TQHSVFTIPEWLN 97 (102)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~ 97 (102)
+++. ++...||.|.+-.
T Consensus 75 GGgKkrkKk~~t~Pkk~~ 92 (152)
T 3u5c_f 75 GGGKKRKXXXXXXXXXXX 92 (152)
T ss_dssp -------CCCCCCCSCCC
T ss_pred CCCcCccccccccccccc
Confidence 8765 4568999998753
No 31
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.81 E-value=2.3e-19 Score=123.99 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=74.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+||..+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~y~I~~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTE------ECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCc------cccCcCcHHHcCCCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCCce
Q 041108 81 DDGSTQ 86 (102)
Q Consensus 81 ~~~~~~ 86 (102)
++....
T Consensus 75 GG~k~~ 80 (169)
T 3l0w_B 75 GGGGET 80 (169)
T ss_dssp C---CC
T ss_pred cccccc
Confidence 765443
No 32
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.1e-20 Score=116.23 Aligned_cols=73 Identities=22% Similarity=0.369 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEec--CCCcHHHHHHHH-HhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCC-CCCCEEEEE
Q 041108 1 MKVAVEILTGTLFYIQVE--NDATVADLKREI-GAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGV-KDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~--~~~TV~dLK~~I-~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI-~~~~~i~l~ 76 (102)
|+|+||+.+|+++.++|+ +++||.+||++| ++..|+|+++|||+|+|+ .|+|+.+|++|+| .+|++|++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk------~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGK------VLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTE------ECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCE------ECcCcCCHHHcCCCCCCCEEEEE
Confidence 899999999998888766 999999999999 999999999999999999 9999999999999 699999999
Q ss_pred eec
Q 041108 77 FKP 79 (102)
Q Consensus 77 ~~~ 79 (102)
.++
T Consensus 76 ~~~ 78 (87)
T 2lxa_A 76 IKP 78 (87)
T ss_dssp ECC
T ss_pred cCC
Confidence 864
No 33
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.70 E-value=1.2e-21 Score=117.96 Aligned_cols=75 Identities=21% Similarity=0.418 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk------~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGK------ELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 75 g 75 (76)
T 3b1l_X 75 R 75 (76)
Confidence 5
No 34
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.81 E-value=9.4e-20 Score=116.32 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEE--EecCCCcHHHHHHHH-HhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCC-CCCCEEEEE
Q 041108 1 MKVAVEILTGTLFYI--QVENDATVADLKREI-GAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGV-KDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i--~v~~~~TV~dLK~~I-~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI-~~~~~i~l~ 76 (102)
|+|+||+.+|+.+.+ +|++++||.+||++| ++..|+|+++|||+|+|+ .|+|+.+|++|+| ++|++|+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk------~L~D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGK------VLHDNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTE------EECTTCBGGGSCCBTTBCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCE------ECcCcCCHHHcCcCCCCCEEEEE
Confidence 789999999988776 566999999999999 888999999999999999 9999999999999 999999999
Q ss_pred eecC
Q 041108 77 FKPL 80 (102)
Q Consensus 77 ~~~~ 80 (102)
++.+
T Consensus 94 vskp 97 (98)
T 4a20_A 94 IKPN 97 (98)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 8764
No 35
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.81 E-value=8e-20 Score=115.73 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++++++.
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk------~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ------RIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCe------EcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 96 GG 97 (97)
T 1wyw_B 96 GG 97 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 36
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=114.65 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+. |+.+.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA------PLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTE------ECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCE------ECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7899998 899999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 92 GG 93 (93)
T 2l7r_A 92 GG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 37
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.81 E-value=1.4e-19 Score=122.51 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||++||++|++++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~------~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGK------PLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCe------ecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
|+++
T Consensus 156 GG~r 159 (159)
T 3rt3_B 156 GGGR 159 (159)
T ss_dssp ----
T ss_pred CCCC
Confidence 8753
No 38
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.4e-19 Score=116.18 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++.+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGR------PLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTE------ECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
+.
T Consensus 98 ~~ 99 (106)
T 1ttn_A 98 VQ 99 (106)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 39
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=115.22 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTE------ECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCE------ECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 110 GG 111 (111)
T 2ojr_A 110 GG 111 (111)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 40
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.80 E-value=2.8e-19 Score=117.49 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=75.5
Q ss_pred CEEEEEeCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCC-------CCE
Q 041108 1 MKVAVEILTGT-LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKD-------GSH 72 (102)
Q Consensus 1 M~v~V~~~~g~-~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~-------~~~ 72 (102)
|.++++.+.++ ++.+++++++||.+||++|+.+.|+|+++|||+|+|+ .|+|+++|++|||++ +++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk------~LeD~kTL~dy~I~~~ta~~q~~at 74 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQ------LLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTTTTTCCGGGSBTTBCEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCe------ECCCcCCHHHcCCCcCcccCCCCCE
Confidence 88999999886 6889999999999999999999999999999999999 999999999999999 999
Q ss_pred EEEEeecCCCCCceeEE
Q 041108 73 IYLFFKPLDDGSTQHSV 89 (102)
Q Consensus 73 i~l~~~~~~~~~~~~~~ 89 (102)
|++.++. ++.++...|
T Consensus 75 l~Lvlr~-~~~fE~l~i 90 (118)
T 4ajy_B 75 VGLAFRA-DDTFEALCI 90 (118)
T ss_dssp EEEEECC-SSCCCCCCB
T ss_pred EEEEEec-CCCccceEE
Confidence 9999996 677766444
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.9e-19 Score=113.90 Aligned_cols=76 Identities=30% Similarity=0.434 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++++..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~ygI~~gstI~l~~r~~ 95 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGK------ILKDPDSLAQCGVRDGLTVHLVIKRQ 95 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCE------ECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence 78999999886 689999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
+..
T Consensus 96 ~~p 98 (100)
T 1yqb_A 96 HRA 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 42
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2e-19 Score=112.68 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=71.5
Q ss_pred CEEEEEeCCCc--EEEEEecCCCcHHHHHHHHHhhc--CCCCccEEEEeCCCCCCCCccCCCCCccccC--CCCCCCEEE
Q 041108 1 MKVAVEILTGT--LFYIQVENDATVADLKREIGAQQ--KLPCDRLILLLSSDHSCPMTQDHDEVPLADC--GVKDGSHIY 74 (102)
Q Consensus 1 M~v~V~~~~g~--~~~i~v~~~~TV~dLK~~I~~~~--gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~--gI~~~~~i~ 74 (102)
|+|+|++.+|+ .+.+++++++||.+||++|++++ ++|+++|||+|+|+ .|+|+.+|++| +|+++++|+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk------~L~D~~tL~~~~~~i~~~~~i~ 81 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGK------LLLDHQCLRDLLPKQEKRHVLH 81 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTE------ECCSSSCHHHHSCSSSCSEEEE
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCE------ECcCcCCHHHHhcCCCCCCEEE
Confidence 79999999988 56777889999999999999998 99999999999999 99999999999 999999999
Q ss_pred EEeecCCCC
Q 041108 75 LFFKPLDDG 83 (102)
Q Consensus 75 l~~~~~~~~ 83 (102)
+++++.++.
T Consensus 82 lv~~~~gg~ 90 (93)
T 1wgd_A 82 LVCNVKSGP 90 (93)
T ss_dssp EECCCCCCC
T ss_pred EEeCCCCCC
Confidence 999887654
No 43
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=112.68 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=71.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..+.+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGK------ILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTE------EECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCE------ECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999998 889999999999999999999999999999999999999 99999999999999999999998876
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
..
T Consensus 99 ~~ 100 (101)
T 2klc_A 99 NR 100 (101)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 44
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.79 E-value=2.1e-19 Score=118.25 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=74.7
Q ss_pred CEEEEEeCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCC-------CCCE
Q 041108 1 MKVAVEILTGT-LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVK-------DGSH 72 (102)
Q Consensus 1 M~v~V~~~~g~-~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~-------~~~~ 72 (102)
|+++|+.+.|+ ++.++|++++||.+||++|+.+.|+|+++|||+|+|+ .|+|+++|++|||+ ++++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk------~LeD~~TLsdy~I~~~~a~~q~~st 74 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQ------LLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCe------ECCCCCCHHHcCcccccccCCCCCE
Confidence 88889988775 5899999999999999999999999999999999999 99999999999999 7999
Q ss_pred EEEEeecCCCCCceeEE
Q 041108 73 IYLFFKPLDDGSTQHSV 89 (102)
Q Consensus 73 i~l~~~~~~~~~~~~~~ 89 (102)
|++.++ .++.++...|
T Consensus 75 L~L~lr-~~g~fe~l~i 90 (118)
T 2fnj_B 75 VGLAFR-ADDTFEALRI 90 (118)
T ss_dssp EEEEEB-SSSCBCCCCB
T ss_pred EEEEec-CCCceeeeEE
Confidence 999999 7777765433
No 45
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.78 E-value=5.6e-19 Score=114.16 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=72.5
Q ss_pred CEEEEEeC---CCcEEEEEecC-CCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 1 MKVAVEIL---TGTLFYIQVEN-DATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~---~g~~~~i~v~~-~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
|+|+|++. +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk------~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG------FLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSS------BCCTTSBTTTTTCSSSCEEEEE
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCE------ECCCCCcHHHCCCCCCCEEEEE
Confidence 68999998 78999999998 99999999999999999999999999999 9999999999999999999999
Q ss_pred eecCCC
Q 041108 77 FKPLDD 82 (102)
Q Consensus 77 ~~~~~~ 82 (102)
+++.++
T Consensus 102 ~r~~GG 107 (111)
T 1we6_A 102 LRERSG 107 (111)
T ss_dssp CSSCCS
T ss_pred EEcCCC
Confidence 998775
No 46
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.5e-18 Score=112.95 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=73.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
.+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..++.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGK------QLEDGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTCBTTTTTCCSSCEEEEEECCC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCE------ECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 479999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 84 GG~ 86 (114)
T 2kdi_A 84 GGS 86 (114)
T ss_dssp SSC
T ss_pred CCc
Confidence 764
No 47
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.78 E-value=4.5e-19 Score=124.83 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=75.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk------~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTE------ECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCE------ECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCCc
Q 041108 81 DDGST 85 (102)
Q Consensus 81 ~~~~~ 85 (102)
++...
T Consensus 180 GG~~~ 184 (189)
T 3q3f_A 180 GGGQT 184 (189)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 86543
No 48
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.6e-19 Score=112.54 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=72.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|+++++..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk------~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGK------ILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTE------ECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE------ECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 78999998 999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 91 ~g~ 93 (96)
T 1wx8_A 91 SGP 93 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 653
No 49
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=5.7e-19 Score=112.68 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=72.2
Q ss_pred CEEEEEeCCC----cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCC-CccccCCCCCCCEEEE
Q 041108 1 MKVAVEILTG----TLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDE-VPLADCGVKDGSHIYL 75 (102)
Q Consensus 1 M~v~V~~~~g----~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~-~~L~~~gI~~~~~i~l 75 (102)
|+|+|+..+| +.+.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+ .+|++|||++|++|++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk------~L~D~~~tL~~ygI~~g~~l~l 81 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQ------LLTDDHCSLGSYGLKDGDMVVL 81 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTE------EECCSSSBHHHHTCCTTEEEEE
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCE------ECCCCcccHHHCCCCCCCEEEE
Confidence 7899999754 68999999999999999999999999999999999999 99877 7999999999999999
Q ss_pred EeecCCCCCc
Q 041108 76 FFKPLDDGST 85 (102)
Q Consensus 76 ~~~~~~~~~~ 85 (102)
..+..++.+.
T Consensus 82 ~~~~~gg~~~ 91 (102)
T 1v5o_A 82 LQKDNVGLRT 91 (102)
T ss_dssp CBCCCCCCSS
T ss_pred EECCCCCCCC
Confidence 9988776543
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=8.4e-19 Score=112.40 Aligned_cols=77 Identities=30% Similarity=0.423 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+++++|+|+|+|+ .|+|+.+|++|+|++|++|+++.+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk------~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGK------ILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTE------ECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCE------ECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999886 789999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
+...
T Consensus 91 ~~~~ 94 (106)
T 1wx7_A 91 HRAM 94 (106)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6544
No 51
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.77 E-value=2.1e-20 Score=123.76 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=0.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||.+|++|+++++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCE------ECCCCCchhhhccCCCCEEEEEEEcC
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 75 GG~ 77 (128)
T 3u5e_m 75 GGI 77 (128)
T ss_dssp --C
T ss_pred CCC
Confidence 764
No 52
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.77 E-value=3.6e-18 Score=115.57 Aligned_cols=73 Identities=26% Similarity=0.376 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE-e-CCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL-L-SSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~-~-~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+ | +|+ .|+|+.+|++|||++|++|++.++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~------~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGV------ALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCC------BCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCC------CCCCCCCHHHcCCCCCCEEEEEcc
Confidence 89999999999999999999999999999999999999999999 9 799 999999999999999999999998
Q ss_pred c
Q 041108 79 P 79 (102)
Q Consensus 79 ~ 79 (102)
.
T Consensus 77 ~ 77 (159)
T 3rt3_B 77 K 77 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=118.31 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.++..
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~------~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCc------cccccCCHhHcCCcccceeeeeeccc
Confidence 899999999999999999999999999999999999999999999999 99999999999999999999999877
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 95 gg 96 (172)
T 3u30_A 95 GG 96 (172)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=5e-19 Score=114.31 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc---------------cEEEEeCCCCCCCCccCC-CCCcccc
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD---------------RLILLLSSDHSCPMTQDH-DEVPLAD 64 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~---------------~q~L~~~g~~~~~~~~L~-d~~~L~~ 64 (102)
|+|+|+..+|+++.++|++++||.+||++|+++.++|+. .|+|+|+|+ .|. |+++|++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk------~L~dD~~tL~d 81 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGE------KLTEDRKKLRD 81 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSC------EECCSSSBHHH
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCc------CccCCcCCHHH
Confidence 899999999999999999999999999999999999884 569999999 885 6799999
Q ss_pred CCCCCCCEEEEEeecCCC
Q 041108 65 CGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 65 ~gI~~~~~i~l~~~~~~~ 82 (102)
|||++|++|+++.++.+.
T Consensus 82 ygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 82 YGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp HTCCSSEEEEEEECSCSC
T ss_pred cCCCCCCEEEEEehhccC
Confidence 999999999999998765
No 55
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=114.15 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGK------ILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTE------EESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 78999998 999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 106 gg~ 108 (125)
T 1j8c_A 106 PNS 108 (125)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 56
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.76 E-value=5.6e-18 Score=112.94 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=72.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++.+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++..+..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~------~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCe------ECcCcccHHHhccCCCCeeEEEeecc
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999998876
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
+.
T Consensus 75 ~~ 76 (152)
T 3b08_A 75 GG 76 (152)
T ss_dssp TC
T ss_pred cc
Confidence 53
No 57
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.76 E-value=4.2e-18 Score=109.99 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=68.2
Q ss_pred CEEEEEeCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCC-CCCCEEEEEe
Q 041108 1 MKVAVEILTG--TLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGV-KDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g--~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI-~~~~~i~l~~ 77 (102)
|+|+|+...+ ..+.+++++++||++||++|++++|+||+.|||+++|+ +++|+.+|++||| ++|+++++++
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggk------ll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQR------LARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------EECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCe------EccCcCcHHHcCCCCCCCEEEEEE
Confidence 6899999875 67899999999999999999999999999999999999 9999999999999 5999999998
Q ss_pred ec
Q 041108 78 KP 79 (102)
Q Consensus 78 ~~ 79 (102)
-.
T Consensus 99 ~~ 100 (105)
T 4dbg_A 99 LS 100 (105)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 58
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.75 E-value=8.2e-18 Score=112.13 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+..+|+.+.+++++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|||++|++|++.+++.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~------~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTE------ECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCE------ECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 689999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
|+
T Consensus 151 GG 152 (152)
T 3b08_A 151 GG 152 (152)
T ss_dssp C-
T ss_pred CC
Confidence 63
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.1e-19 Score=112.67 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=67.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+. +|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk------~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK------ILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE------ECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE------ECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4577776 7899999999999999999999999999999999999999 9999999999999999999998764
No 60
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.75 E-value=2.3e-18 Score=107.64 Aligned_cols=73 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEE-EecCCCcHHHHHHHHHhhcCCCCccEEEE---eCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 1 MKVAVEILTGTLFYI-QVENDATVADLKREIGAQQKLPCDRLILL---LSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i-~v~~~~TV~dLK~~I~~~~gip~~~q~L~---~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
|+|+|+. .|+.+.+ ++++++||.+||++|++++|+|+++|||+ |+|+ .|+|+.+|++|+|++|++|+++
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk------~L~D~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK------PAENDVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE------ECCTTSBHHHHTCCTTEEEEEE
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc------CcCCCCCHHHcCCCCCCEEEEE
Confidence 7899997 6889999 99999999999999999999999999999 9999 9999999999999999999998
Q ss_pred eecC
Q 041108 77 FKPL 80 (102)
Q Consensus 77 ~~~~ 80 (102)
....
T Consensus 81 ~~~~ 84 (90)
T 1v5t_A 81 GTRE 84 (90)
T ss_dssp CCCS
T ss_pred ecCc
Confidence 6543
No 61
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=7.3e-18 Score=111.97 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEE-EEEecCCCcHHHHHHHH-----HhhcCCCC--ccEEEEeCCCCCCCCccCCCCCccccCCCCCC--
Q 041108 1 MKVAVEILTGTLF-YIQVENDATVADLKREI-----GAQQKLPC--DRLILLLSSDHSCPMTQDHDEVPLADCGVKDG-- 70 (102)
Q Consensus 1 M~v~V~~~~g~~~-~i~v~~~~TV~dLK~~I-----~~~~gip~--~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~-- 70 (102)
|+|+||+.+|+.+ .+++++++||.+||++| ++..|+|+ ++|||+|+|+ .|+|+.+|++|+|..|
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK------~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGK------VLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTE------ECCTTSBGGGGSCCTTSC
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCe------ECcCCCcHHHcCCCcCCc
Confidence 7899999999888 69999999999999999 45667886 8999999999 9999999999999988
Q ss_pred ----CEEEEEeecCCCCCceeEEEecCCcC
Q 041108 71 ----SHIYLFFKPLDDGSTQHSVFTIPEWL 96 (102)
Q Consensus 71 ----~~i~l~~~~~~~~~~~~~~~~~~~~~ 96 (102)
+++++.+++.+.... ...++.|.+-
T Consensus 91 ~~~v~tmhlVlrl~g~~kk-kk~~~~pkk~ 119 (126)
T 1se9_A 91 AGAVTTMHVIIQAPVTEKE-KKPKGDPKMN 119 (126)
T ss_dssp TTCCEEEEEEECCCSSCCC-C---------
T ss_pred cCCcEEEEEEeccCCcccc-ccCCCCCCCC
Confidence 689999998876554 6778877653
No 62
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.3e-18 Score=108.67 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=64.7
Q ss_pred EEEEeCC----CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 3 VAVEILT----GTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 3 v~V~~~~----g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|.|+..+ |+++.++|++++||.+||++|+++.|+|++.|+|+|+|+ +|+|+.+|++|+|++|++|+ +++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GK------iL~D~~TL~~y~I~~gsti~-vl~ 90 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKK------QLQLGKTLEEQGVAHNVKAM-VLE 90 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTE------ECCTTSBHHHHTCCSSEEEE-EEC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCe------ECCCCCcHHHcCCCCCCEEE-EEE
Confidence 5667776 678999999999999999999999999999999999999 99999999999999999994 444
Q ss_pred cCC
Q 041108 79 PLD 81 (102)
Q Consensus 79 ~~~ 81 (102)
+.+
T Consensus 91 lrg 93 (100)
T 1wju_A 91 LKQ 93 (100)
T ss_dssp CCC
T ss_pred ECC
Confidence 443
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.73 E-value=6.3e-18 Score=116.04 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+++|+..+|+++.+++++++||.+||++|+.++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++.
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~------~L~D~~tL~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTE------ECCTTSBSGGGTCCTTCEEEECC---
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCc------cCCCCCcHHHhCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred CC
Q 041108 81 DD 82 (102)
Q Consensus 81 ~~ 82 (102)
++
T Consensus 171 gG 172 (172)
T 3u30_A 171 GG 172 (172)
T ss_dssp --
T ss_pred CC
Confidence 53
No 64
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=8.1e-18 Score=105.59 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCC-CccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDE-VPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~-~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+..+|+.+.++|++++||.+||++|++.. +++|+|+|+|+ .|+|+ .+|++|||++|++|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk------~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGR------LLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTE------ECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCE------EccCCcCCHHHcCCCCCCEEEEEECC
Confidence 7899999999999999999999999999999987 99999999999 99999 99999999999999999987
Q ss_pred CCCC
Q 041108 80 LDDG 83 (102)
Q Consensus 80 ~~~~ 83 (102)
+...
T Consensus 79 ~~~~ 82 (95)
T 1wia_A 79 PGAA 82 (95)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 65
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.8e-18 Score=107.60 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEE-EEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLF-YIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~-~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|||+|.|+ .|+|+ +|++|||++|++|+++...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk------~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGG------TLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTE------ECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCc------CCCCC-CHHHCCCCCCCEEEEEecc
Confidence 6899996 58889 69999999999999999999999999999999999 99999 9999999999999998765
Q ss_pred C
Q 041108 80 L 80 (102)
Q Consensus 80 ~ 80 (102)
.
T Consensus 80 ~ 80 (96)
T 1wgg_A 80 D 80 (96)
T ss_dssp C
T ss_pred h
Confidence 4
No 66
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.4e-17 Score=103.17 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=65.1
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
..++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|||++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk------~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGK------VLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTE------ECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCe------ECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3566668999999999999999999999999999999999999999 999999999999999999998764
No 67
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.1e-17 Score=104.41 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEecCC-----CcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCC-CCccccCCCCCCCEEE
Q 041108 1 MKVAVEILTGTLFYIQVEND-----ATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHD-EVPLADCGVKDGSHIY 74 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~-----~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d-~~~L~~~gI~~~~~i~ 74 (102)
|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+ .|+| +.+|++|||++|++|+
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk------~L~D~~~~L~~~~i~~g~~i~ 80 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGK------SLKEMETPLSALGIQDGCRVM 80 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTE------EECCSSSBHHHHTCCSSEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCe------ecCCCcccHHHCCCCCCCEEE
Confidence 6889998 488899999995 9999999999999999999999999999 9988 6689999999999999
Q ss_pred EEeecCCC
Q 041108 75 LFFKPLDD 82 (102)
Q Consensus 75 l~~~~~~~ 82 (102)
++.+....
T Consensus 81 l~~~~~~~ 88 (92)
T 1wxv_A 81 LIGKKNSG 88 (92)
T ss_dssp EESCCSCS
T ss_pred EEecCCCC
Confidence 99876543
No 68
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.73 E-value=1.5e-17 Score=108.13 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=69.7
Q ss_pred EEEEEeC----------CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCC
Q 041108 2 KVAVEIL----------TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGS 71 (102)
Q Consensus 2 ~v~V~~~----------~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~ 71 (102)
+|.|+.. +|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+ .|+|+.+|++|+|++|+
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk------~L~D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGI------FIKDSNSLAYYNMASGA 100 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTE------EECTTSBHHHHTCCSSC
T ss_pred EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCE------ECCCCCCHHHCCCCCCC
Confidence 5677765 4778999999999999999999999999999999999999 99999999999999999
Q ss_pred EEEEEeecCCC
Q 041108 72 HIYLFFKPLDD 82 (102)
Q Consensus 72 ~i~l~~~~~~~ 82 (102)
+|++.+++.++
T Consensus 101 ~i~lv~rl~GG 111 (115)
T 1we7_A 101 VIHLALKERSG 111 (115)
T ss_dssp EEEEEECCCSC
T ss_pred EEEEEEEcCCC
Confidence 99999998875
No 69
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=106.82 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=69.0
Q ss_pred CEEEEEeCCC---cEEEEEecC---------CCcHHHHHHHHHhhc--CCCCcc-EEEEeCCCCCCCCccCCCCCccccC
Q 041108 1 MKVAVEILTG---TLFYIQVEN---------DATVADLKREIGAQQ--KLPCDR-LILLLSSDHSCPMTQDHDEVPLADC 65 (102)
Q Consensus 1 M~v~V~~~~g---~~~~i~v~~---------~~TV~dLK~~I~~~~--gip~~~-q~L~~~g~~~~~~~~L~d~~~L~~~ 65 (102)
|+|+||..+| +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+ .|+|+.+|++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk------~L~D~~tL~~y 86 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGR------KLKDDQTLDFY 86 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTE------ECCTTCBHHHH
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCe------ECCCCCcHHHc
Confidence 7899999998 788999544 599999999999999 999999 99999999 99999999999
Q ss_pred CCCCCCEEEEEeecCC
Q 041108 66 GVKDGSHIYLFFKPLD 81 (102)
Q Consensus 66 gI~~~~~i~l~~~~~~ 81 (102)
||++|++|+++.+...
T Consensus 87 ~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 87 GIQPGSTVHVLRKSWS 102 (107)
T ss_dssp TCCTTCEEEEEESSCC
T ss_pred CCCCCCEEEEEeCCCC
Confidence 9999999999987654
No 70
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=108.77 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCccEEEEeCCCCCCCCccCCCCCccccCCCCCCC-
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGA------QQKL--PCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGS- 71 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~------~~gi--p~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~- 71 (102)
|+|+|++.+|+++.+++++++||.+||++|++ +.|+ ++++|||+|+|+ .|+|+.+|++|+|..++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK------~LeD~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR------FLHGNVTLGALKLPFGKT 91 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSS------EEESSCBTGGGCCCTTSE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCc------CCCCCCcHHHcCCCCCCc
Confidence 68899999999999999999999999999999 6787 489999999999 99999999999999776
Q ss_pred -EEEEEeecCCCC
Q 041108 72 -HIYLFFKPLDDG 83 (102)
Q Consensus 72 -~i~l~~~~~~~~ 83 (102)
++++.+++.+..
T Consensus 92 ~tlhlv~r~~~~~ 104 (125)
T 2gow_A 92 TVMHLVARETLPE 104 (125)
T ss_dssp EEEEEEECSCCSS
T ss_pred eEEEEEecCCCCc
Confidence 788888876533
No 71
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=4.1e-17 Score=106.98 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHh------hcCC--CCccEEEEeCCCCCCCCccCCCCCccccCCCCCC--
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGA------QQKL--PCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDG-- 70 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~------~~gi--p~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~-- 70 (102)
|+|+|++.+|+++.++|++++||.+||++|++ +.++ |+++|||+|.|+ .|+|+.+|++|+|..+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK------~LeD~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGR------FLHGNVTLGALKLPFGKT 90 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTE------EECSSCBTTTTTCCSSCE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCc------CCCCCCcHHHcCCCCCCc
Confidence 78999999999999999999999999999999 5575 699999999999 9999999999999766
Q ss_pred CEEEEEeecCC
Q 041108 71 SHIYLFFKPLD 81 (102)
Q Consensus 71 ~~i~l~~~~~~ 81 (102)
.++|+.++...
T Consensus 91 ~tlhLvlr~~~ 101 (116)
T 1wgh_A 91 TVMHLVARETL 101 (116)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEccCCC
Confidence 57888887654
No 72
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=106.61 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEe-CCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLL-SSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~-~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|.++++..+|+++.+++++++||.+||++|++++||||++|||++ .+. .++|+.+|++|+|++|+++++.++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~g------kL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTG------DVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSS------CCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCC------CCCCcCCHHHcCCCCCCEEEEEecC
Confidence 566777778999999999999999999999999999999999985 455 5799999999999999999999887
Q ss_pred CCCCCc
Q 041108 80 LDDGST 85 (102)
Q Consensus 80 ~~~~~~ 85 (102)
.+....
T Consensus 83 ~~~~~~ 88 (100)
T 2dzm_A 83 LPPPSS 88 (100)
T ss_dssp SCCCCS
T ss_pred CCCCcc
Confidence 664443
No 73
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.1e-17 Score=105.68 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|||+|.|+ .|+| .+|++|+|++|++|+++....
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk------~Ldd-~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL------VPED-KTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB------CCSS-SBHHHHCCCTTEEEEECCSSC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCe------eCCc-CcHHHCCCCCCCEEEEEeccc
Confidence 5788885 5889999999999999999999999999999999999999 8854 599999999999999987654
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
.
T Consensus 90 ~ 90 (95)
T 1v86_A 90 S 90 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 74
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=106.06 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=63.8
Q ss_pred CEEEEEeCCCc--EEEEEecCCCcHHHHHHHHHhh-cCCC-CccEEEEeCCCCCCCCccCCCCCccccC--CCCCCCEEE
Q 041108 1 MKVAVEILTGT--LFYIQVENDATVADLKREIGAQ-QKLP-CDRLILLLSSDHSCPMTQDHDEVPLADC--GVKDGSHIY 74 (102)
Q Consensus 1 M~v~V~~~~g~--~~~i~v~~~~TV~dLK~~I~~~-~gip-~~~q~L~~~g~~~~~~~~L~d~~~L~~~--gI~~~~~i~ 74 (102)
|+|+||+.+|+ .+.+++++++||.+||++|+++ .|.| +++|||+|+|+ .|+|+.+|++| +|++|++|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk------~L~D~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGR------LLPDHLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTE------EECTTSBTHHHHTTTCSEEEEE
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCE------ECCCCCCHHHHhcCCCCCCEEE
Confidence 78999999887 5789999999999999999986 5665 59999999999 99999999999 999999998
Q ss_pred EE
Q 041108 75 LF 76 (102)
Q Consensus 75 l~ 76 (102)
|.
T Consensus 98 Lv 99 (99)
T 2kdb_A 98 LV 99 (99)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=101.88 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=63.0
Q ss_pred CEEEEEeCCCcEE--EE-EecCCCcHHHHHHHHHhh-cCCCCccEEEEeC--CCCCCCCccCCCCCccccCCCCCCCEEE
Q 041108 1 MKVAVEILTGTLF--YI-QVENDATVADLKREIGAQ-QKLPCDRLILLLS--SDHSCPMTQDHDEVPLADCGVKDGSHIY 74 (102)
Q Consensus 1 M~v~V~~~~g~~~--~i-~v~~~~TV~dLK~~I~~~-~gip~~~q~L~~~--g~~~~~~~~L~d~~~L~~~gI~~~~~i~ 74 (102)
|+|+|+++.|+.+ .+ +|++++||.+||++|+++ .|+||++|+|.|. |+ .|+|+.+|++|+|++|++|+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk------~L~D~~tL~~y~i~~~stl~ 84 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGK------SLKDEDVLQKLPVGTTATLY 84 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSC------CCCTTCBTTTSSCCSEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCc------CcCCCCCHHHcCCCCCCEEE
Confidence 8999999988664 58 999999999999999994 8999999999987 77 99999999999999999977
Q ss_pred E
Q 041108 75 L 75 (102)
Q Consensus 75 l 75 (102)
+
T Consensus 85 ~ 85 (88)
T 2dzj_A 85 F 85 (88)
T ss_dssp E
T ss_pred E
Confidence 5
No 76
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.67 E-value=1.2e-16 Score=98.86 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=64.5
Q ss_pred CEEEEEeCCCcEEEEE-ecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCC-CCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLFYIQ-VENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDH-DEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~-v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~-d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|+|+||+.+|+. .++ +++++||.+||++|++++|+|+++|+|++++.|.++ .++ |+.+|++|||.+|++|++.-.
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l--~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECL--DLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCC--CCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCccc--ccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999965 477 999999999999999999999999999998653322 233 789999999999999988755
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.67 E-value=1.9e-16 Score=118.40 Aligned_cols=73 Identities=26% Similarity=0.435 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|+|+|+..+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+ .|+|+.+|++|+|++|++|++.+++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk------~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK------QLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE------ECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCe------ecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 789999999999999999999999999999999999999999999999 9999999999999999999999875
No 78
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=103.34 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=67.6
Q ss_pred EEEEE-eCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 2 KVAVE-ILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 2 ~v~V~-~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
.|.|+ ...|+.+.++++++.||.+||++++++.++|+++|+|+|+|+ .|+|+.+|++|||++|.+|||..+..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GK------iLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGK------ILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTE------EECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCe------EcCCcchHHHcCCCCCCEEEEEEecC
Confidence 34555 446788999999999999999999999999999999999999 99999999999999999999999875
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 91 ~ 91 (118)
T 2daf_A 91 N 91 (118)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.66 E-value=6.1e-18 Score=119.00 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=8.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|++++|+++.++|++++||.+||.+|+...|+|+++|+|+|+|+ .|+|+.+|+ ++++|+|.+++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK------~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGF------IAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCe------ECCCCCccc-----CCCEEEEEEecC
Confidence 899999999999999999999999999999999999999999999999 999999998 899999999988
Q ss_pred CCCC-ceeEEEecCCc
Q 041108 81 DDGS-TQHSVFTIPEW 95 (102)
Q Consensus 81 ~~~~-~~~~~~~~~~~ 95 (102)
++.. ++...+++|..
T Consensus 70 GG~~krkK~~~~tPK~ 85 (189)
T 2xzm_9 70 GGKKKKKKKSYTTKKK 85 (189)
T ss_dssp --CCCCCCCCCCSSSC
T ss_pred CCcccccccccCCCcc
Confidence 7543 44677888853
No 80
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.66 E-value=3.3e-16 Score=99.23 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=61.8
Q ss_pred EEEEEeCCCc--EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 2 KVAVEILTGT--LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 2 ~v~V~~~~g~--~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
.|+|+...++ .+.+++++++||++||++|+..+|+||++|||+|.|.+.....+++|+++|++|||++|++|++.
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 5777776653 78999999999999999999999999999999998510000014599999999999999999985
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=1.9e-16 Score=101.93 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=66.9
Q ss_pred CEEEEEeCCCcEEEEEec-CCCcHHHHHHHHHhhcCCCCccEEEEeCCCCC---------CCCccCCCCCccccCCCCCC
Q 041108 1 MKVAVEILTGTLFYIQVE-NDATVADLKREIGAQQKLPCDRLILLLSSDHS---------CPMTQDHDEVPLADCGVKDG 70 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~-~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~---------~~~~~L~d~~~L~~~gI~~~ 70 (102)
|+|+||+.+|+. .++|+ +++||.+||++|++++|+|+++|+|.+.+++. .+...++|+++|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 78999 99999999999999999999999998887621 11111689999999999999
Q ss_pred CEEEEEeec
Q 041108 71 SHIYLFFKP 79 (102)
Q Consensus 71 ~~i~l~~~~ 79 (102)
++|+|....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999998764
No 82
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.63 E-value=7e-16 Score=117.72 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHh---hcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEE-EEE
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGA---QQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHI-YLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~---~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i-~l~ 76 (102)
|+|+||+.+|+++.++|++++||.+||++|+. +.|+|+++|||+|+|+ .|+|+.+|++|+|++|++| ++.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK------~L~D~~tL~dygI~~gstIv~lv 81 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGK------ILSDDVPIRDYRIDEKNFVVVMV 81 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSS------EECSSSBTTTTCCCTTSCEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCe------ecCCcCCHHHcCCCCCCEEEEEE
Confidence 89999999999999999999999999999999 6789999999999999 9999999999999999999 555
Q ss_pred eecCC
Q 041108 77 FKPLD 81 (102)
Q Consensus 77 ~~~~~ 81 (102)
.+..+
T Consensus 82 ~k~~~ 86 (368)
T 1oqy_A 82 TKTKA 86 (368)
T ss_dssp ECCCS
T ss_pred ecCCC
Confidence 55443
No 83
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.62 E-value=2.2e-15 Score=93.77 Aligned_cols=78 Identities=13% Similarity=0.031 Sum_probs=61.8
Q ss_pred EEEEeC--CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCC-CccCCCCCccccCCCCCCCEEEEEeec
Q 041108 3 VAVEIL--TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCP-MTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 3 v~V~~~--~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~-~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|.|... .++.+.+.+++++||.+||++|+..+|+||+.|+|+|.+..... ...++|+++|++|||++|++||+.-..
T Consensus 5 v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 5 VSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp EEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 444433 34667899999999999999999999999999999974321110 128999999999999999999998654
Q ss_pred C
Q 041108 80 L 80 (102)
Q Consensus 80 ~ 80 (102)
|
T Consensus 85 P 85 (86)
T 4b6w_A 85 P 85 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.61 E-value=2.1e-15 Score=95.86 Aligned_cols=76 Identities=14% Similarity=0.079 Sum_probs=61.9
Q ss_pred EEEEEeCCC--cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCC-CCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 2 KVAVEILTG--TLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDH-SCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 2 ~v~V~~~~g--~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~-~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
.|+|..... ..+.+++++++||++||++|+..+|+||++|||+|.|+. .....+++|+++|++|+|++|++|++.=
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 466776544 468999999999999999999999999999999998831 1110135999999999999999999873
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=93.81 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=62.7
Q ss_pred EEEEEeCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC-CCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 2 KVAVEILTGT-LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD-HSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 2 ~v~V~~~~g~-~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~-~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
.|+|+..++. .+.+++++++||++||++|+..+|+|+++|||+|.|+ +.....+++|+++|++|||++|++|++.-..
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 5677776543 6889999999999999999999999999999999872 0000003589999999999999999987533
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.56 E-value=1.6e-14 Score=94.76 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=63.8
Q ss_pred EEEEEeCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC-CCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 2 KVAVEILTGT-LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD-HSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 2 ~v~V~~~~g~-~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~-~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
.|+|+..++. .+.+++++++||++||.+|+..+|+|+++|||+|.|. +..+..+++|+++|++|||++|++||+.-..
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 5677776553 5889999999999999999999999999999999872 0000003589999999999999999999654
Q ss_pred C
Q 041108 80 L 80 (102)
Q Consensus 80 ~ 80 (102)
+
T Consensus 88 p 88 (122)
T 1t0y_A 88 G 88 (122)
T ss_dssp T
T ss_pred C
Confidence 4
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.55 E-value=1.1e-14 Score=109.31 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=65.5
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE---eCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL---LSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~---~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|.|+|+. +|+.+.+++++++||++||++|++.+|+||++|||+ |+|+ .|+|+.+|++|||++|++|+++.
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk------~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGK------TAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSS------BCCTTSBTTSSCCC--CEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCc------ccCccccHHHcCCCCCCEEEEEc
Confidence 4678886 689999999999999999999999999999999999 8999 99999999999999999999986
Q ss_pred ecCC
Q 041108 78 KPLD 81 (102)
Q Consensus 78 ~~~~ 81 (102)
...+
T Consensus 79 s~~~ 82 (320)
T 3shq_A 79 STEA 82 (320)
T ss_dssp CCC-
T ss_pred cchh
Confidence 5443
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=7.7e-14 Score=88.09 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|.|+..+|+.+.+.|.+++++..|+++++++.|++++.|+++|.|+ .|+++.++++|++.+|++|+++++..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~------~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ------PINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 678999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 82 GG~ 84 (94)
T 2io1_B 82 GGV 84 (94)
T ss_dssp ESC
T ss_pred CCC
Confidence 763
No 89
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=4.9e-13 Score=84.01 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=73.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|.|+..+|+.+.+.|.+++++..|+++++++.|++++.++++|.|. .+.++.|.+++++.+|++|.++....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~------~l~~~~Tp~dl~medgD~Idv~~~q~ 79 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ------PINETDTPAQLEMEDEDTIDVFQQQT 79 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTE------ECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 578888889999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
++.-
T Consensus 80 gg~~ 83 (91)
T 2io0_B 80 GGVY 83 (91)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7543
No 90
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=8.4e-13 Score=83.11 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=63.7
Q ss_pred EEEEEe---CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCC--CccCCCCCccccCCCCCCCEEEEE
Q 041108 2 KVAVEI---LTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCP--MTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 2 ~v~V~~---~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~--~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
.|+|+. .+|+.+...+..++||++||.+|+..+|+|+..|+|.|.+...+. ..+.+|+++|+.||+.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 455664 467888999999999999999999999999999999987532121 113488899999999999999998
Q ss_pred eecC
Q 041108 77 FKPL 80 (102)
Q Consensus 77 ~~~~ 80 (102)
...+
T Consensus 91 d~~p 94 (97)
T 1wjn_A 91 WSGP 94 (97)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 7543
No 91
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.43 E-value=5.8e-13 Score=79.92 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=67.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|.|+..+|+.+.+.+.+++++..|+++++++.|++++.++++|.|. .+.++.+.+++++.+|++|++++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~------~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ------PINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTE------ECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEC
Confidence 578999999999999999999999999999999999999999999999 99999999999999999999863
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.42 E-value=1.3e-12 Score=82.20 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=69.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++++|.|. .|.++.|.++|++.+|++|++++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~------~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ------PINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCE------EcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 568888888999999999999999999999999999999999999999 99999999999999999999998876
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
|
T Consensus 92 G 92 (93)
T 2d07_B 92 G 92 (93)
T ss_dssp -
T ss_pred C
Confidence 5
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1.1e-12 Score=84.32 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=73.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|.|+..+|+.+.+.|.++.++..|+.+++++.|++++.++++|.|. .|.++.|..+|++.+|++|++++...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~------~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQ------PINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSS------BCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 578899889999999999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCCC
Q 041108 81 DDGS 84 (102)
Q Consensus 81 ~~~~ 84 (102)
++.+
T Consensus 99 GG~~ 102 (104)
T 1wz0_A 99 SGPS 102 (104)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.36 E-value=3.5e-12 Score=77.91 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=66.6
Q ss_pred CEEEEEeCCCc-EEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 1 MKVAVEILTGT-LFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~-~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
|+|.|+..+|+ .+.+.+.+++++..|+.+++++.|++++.++++|.|. .+.++.+.+++++.+|++|+++
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~------~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGT------KLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTE------ECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE------EcCCCCCHHHcCCCCCCEEEEe
Confidence 57889999995 8999999999999999999999999999999999999 9999999999999999999986
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.33 E-value=6.2e-12 Score=81.05 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|.|+. +|+...+.+..++++..|+.+++++.|++++.++++|.|+ .+.++.|.+++++.+|++|.+++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~------rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTE------ECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCe------EcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788888 8999999999999999999999999999999999999999 99999999999999999999998876
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
|
T Consensus 105 G 105 (106)
T 2eke_C 105 G 105 (106)
T ss_dssp -
T ss_pred c
Confidence 5
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.32 E-value=3.1e-12 Score=82.98 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++++|.|. .|.++.|.++|++.+|++|.+++...
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~------~L~~~~Tp~dl~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGT------PIDETKTPEELGMEDDDVIDAMVEQT 100 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSC------BCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEEccc
Confidence 578999999999999999999999999999999999999999999999 99999999999999999999999887
Q ss_pred CCC
Q 041108 81 DDG 83 (102)
Q Consensus 81 ~~~ 83 (102)
++.
T Consensus 101 Gg~ 103 (110)
T 2k8h_A 101 GGL 103 (110)
T ss_dssp CC-
T ss_pred Ccc
Confidence 654
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.29 E-value=1.6e-12 Score=79.81 Aligned_cols=74 Identities=14% Similarity=0.259 Sum_probs=62.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
|.++||+.+|. +.+++++++|+.+|+++|++.++++++.|.+.++..|..+. .+.++.+|+++|+++||.|++.
T Consensus 5 m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l-~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI-TASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS-SSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc-cCCCCCCHHHcCCCCCCEEEEe
Confidence 67899999884 67889999999999999999999999999998888752111 2348889999999999999874
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.06 E-value=1.4e-09 Score=70.88 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
++|.|+..+|....+.+..+.++..|+.+.+++.|++++.++++|.|. .+.++.|..++++.+|++|.++....
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~------rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQ------RIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTE------ECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCe------ECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 357788888998999999999999999999999999999999999999 99999999999999999999998654
No 99
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8.3e-09 Score=72.97 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=71.5
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
+|.|+. +|+...+.+..++++..|+.+.+++.|++++.+|++|.|+ .+.++.|..++++.+|++|.++....+
T Consensus 31 ~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~------rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 31 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp EEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTE------ECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred EEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCE------EcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 567764 7899999999999999999999999999999999999999 999999999999999999999999887
Q ss_pred CCCcee
Q 041108 82 DGSTQH 87 (102)
Q Consensus 82 ~~~~~~ 87 (102)
+....+
T Consensus 104 g~kd~v 109 (200)
T 3pge_A 104 GGGETI 109 (200)
T ss_dssp CC-CCE
T ss_pred CcCceE
Confidence 665443
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.2e-08 Score=70.63 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=70.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
.|.|+. +|....+.|..+.++..|+++.+++.|+++..++++|.|. .+.++.|..++++.+||+|.+++...+
T Consensus 59 nLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGq------RI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 59 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI------EIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTE------ECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred EEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCe------ecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 466753 7889999999999999999999999999999999999999 999999999999999999999999887
Q ss_pred CCC
Q 041108 82 DGS 84 (102)
Q Consensus 82 ~~~ 84 (102)
+..
T Consensus 132 G~~ 134 (207)
T 3tix_A 132 GLP 134 (207)
T ss_dssp TGG
T ss_pred CCc
Confidence 654
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.57 E-value=1.6e-09 Score=77.38 Aligned_cols=84 Identities=11% Similarity=0.107 Sum_probs=4.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|.|.| ..+|+...+.+..++++..|+++.+++.|++++.+|++|.|+ .+.++.|.+++++.+||+|.++....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGq------RI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCE------ecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 45677 567888899999999999999999999999999999999999 99999999999999999999999988
Q ss_pred CCCCceeEEEe
Q 041108 81 DDGSTQHSVFT 91 (102)
Q Consensus 81 ~~~~~~~~~~~ 91 (102)
|+..-..++.+
T Consensus 95 GG~~~~~l~~~ 105 (227)
T 3v7o_A 95 GGLTLAVLLQI 105 (227)
T ss_dssp -CCCHHHHHHH
T ss_pred CCchHhHHHHH
Confidence 87654443333
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.57 E-value=6.4e-07 Score=54.68 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=62.6
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc-cEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD-RLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~-~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
+-+|+.....+.+.+.++.+|.+|..+-..+.|++++ ..++.|.|. -|++++++.+|++.+|+.|-+++
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGd------RLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGE------WLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTE------ECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCc------ccCccCChhhhCCcCCceeeeee
Confidence 4456655566899999999999999999999999999 899999999 99999999999999999999875
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.52 E-value=5.1e-07 Score=56.85 Aligned_cols=64 Identities=11% Similarity=0.000 Sum_probs=50.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCC-CCCEEEEE
Q 041108 9 TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVK-DGSHIYLF 76 (102)
Q Consensus 9 ~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~-~~~~i~l~ 76 (102)
.++.+.+.++++.|+..||++|++++|||++.|+|+|.|+ +. .++++.+...|.-. ...-|.++
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~--~l--~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR--RL--VLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE--EE--CCCTTCBGGGSCCCBTTBCEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC--cc--ccCCCCccccCCCCCCCCCEEEE
Confidence 4678899999999999999999999999999999999996 01 35666777676553 33444444
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.44 E-value=1e-06 Score=55.65 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=63.5
Q ss_pred EEEEEeCCC-cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 2 KVAVEILTG-TLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 2 ~v~V~~~~g-~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
.|.|+..+| +...+.+..+.++..|..+.+++.|+++...+++|.|. .+.++.|..++++.+|++|.++
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~------rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGT------KLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTE------ECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCE------EcCCCCCHHHcCCCCCCEEEEe
Confidence 567777788 47899999999999999999999999999999999999 9999999999999999999875
No 105
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.25 E-value=1.5e-06 Score=57.52 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc-cEEEEeCCC-C--------------------------CCC--
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD-RLILLLSSD-H--------------------------SCP-- 52 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~-~q~L~~~g~-~--------------------------~~~-- 52 (102)
+.|+.++|+..++.|+.+.||++++..|..+.|++.. +--|..... + ..+
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999998744 222322110 0 000
Q ss_pred ---CccCCCCCccccCCCCCCCEEEEEe
Q 041108 53 ---MTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 53 ---~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
.+-|+++.+|.++||.+++++.+-.
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 0246778999999999999987754
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.20 E-value=6.6e-06 Score=58.03 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=67.6
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
.|.|+. +|+...+.+..++++..|+++.+++.|++++.++++|.|+ .+.++.+..++.+.++++|.++....+
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~------~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTE------ECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCE------eccCCCChHHhhhcccccchhhccccc
Confidence 456665 6777889999999999999999999999999999999999 999999999999999999999988776
Q ss_pred CC
Q 041108 82 DG 83 (102)
Q Consensus 82 ~~ 83 (102)
+.
T Consensus 96 g~ 97 (209)
T 3uf8_A 96 GS 97 (209)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.17 E-value=6.9e-06 Score=51.24 Aligned_cols=73 Identities=8% Similarity=0.034 Sum_probs=67.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
|.|+|-..+|+...+.|.++.++.|+-+...+++|+++++-.|.|+++ .++-+.++.-.|+.+|+.+.+....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k------~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRT------VLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTE------EESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCE------eccccceeEecCCCCCCEEEEEEcc
Confidence 678899999999999999999999999999999999999999999999 9999999999999999999998643
No 108
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.11 E-value=4.3e-05 Score=46.40 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=58.3
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccC---CCCCccccCCCCCCCEEEEEe
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQD---HDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L---~d~~~L~~~gI~~~~~i~l~~ 77 (102)
+|.||..+|+...-....++||.+|...|.+ .+.++....|+.+.. .+.+ +.+++|.++|+.++++|++-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fP----rk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFP----RRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSS----CCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCC----CCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5889999999888888999999999999998 567888888885432 1144 567899999999999998853
No 109
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.10 E-value=4.2e-07 Score=69.16 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
.|.|+. +|+...+.+..++++..|+++.+++.|++++.++++|.|+ .+.++.|.+++++.+||+|.++....+
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~------rI~~~~TP~~L~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQTPEDLDMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCe------ECCCCCChHHcCCCccchhhhhhccCc
Confidence 455665 5677889999999999999999999999999999999999 999999999999999999999998765
Q ss_pred C
Q 041108 82 D 82 (102)
Q Consensus 82 ~ 82 (102)
+
T Consensus 96 ~ 96 (360)
T 3ix6_A 96 G 96 (360)
T ss_dssp -
T ss_pred h
Confidence 4
No 110
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.09 E-value=2e-05 Score=49.55 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=64.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
.|.|+. +|....+.+..+.....|..+.+++.|+++++.+++|.|. -+.++.|-.++++.+|++|.+++-
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~------rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGET------ELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTE------ECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCc------CCCCCCCHhHcCCCCCCEEEEEEe
Confidence 466774 5788999999999999999999999999999999999999 999999999999999999998863
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.06 E-value=1.2e-05 Score=49.21 Aligned_cols=68 Identities=15% Similarity=0.345 Sum_probs=56.2
Q ss_pred EEEEEeC--CCcEEEEEecCCCcHHHHHHHHHhhcCCCCc-----cEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEE
Q 041108 2 KVAVEIL--TGTLFYIQVENDATVADLKREIGAQQKLPCD-----RLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIY 74 (102)
Q Consensus 2 ~v~V~~~--~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~-----~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~ 74 (102)
.|++... .|+.+.+.++...|+.+|.+.+-+..+++.. +.|+.-.+. .|.++..|.+|+|++||.+.
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~------~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDK------VFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTE------EEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCE------EEcCCCEEeeCCcCCCCEEE
Confidence 4566653 5799999999999999999999999997642 235555666 88999999999999999987
Q ss_pred E
Q 041108 75 L 75 (102)
Q Consensus 75 l 75 (102)
+
T Consensus 80 i 80 (81)
T 2bps_A 80 I 80 (81)
T ss_dssp E
T ss_pred E
Confidence 5
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.80 E-value=2.8e-06 Score=64.41 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCCC
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~~ 82 (102)
|.|+. +|....+.+..++++..|++..+++.|+++.+++++|.|+ .+.++.|.+++++.+|++|.++....++
T Consensus 33 lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~------~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 33 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI------RIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCE------EcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 44554 5677789999999999999999999999999999999999 9999999999999999999999887664
Q ss_pred C
Q 041108 83 G 83 (102)
Q Consensus 83 ~ 83 (102)
.
T Consensus 106 ~ 106 (389)
T 4da1_A 106 E 106 (389)
T ss_dssp -
T ss_pred c
Confidence 4
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.76 E-value=0.00033 Score=44.64 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=59.9
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCC---CCCccccCCCCCCCEEEEEee
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDH---DEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~---d~~~L~~~gI~~~~~i~l~~~ 78 (102)
+|.||..+|+...-....++||.+|...|.+..+.+.....|+.... .+.+. .+++|.++|+.+.+++++...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fP----rk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFP----RREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSS----CCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCC----CcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 58899999998888999999999999999998877777777875433 12553 478999999999988888764
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.57 E-value=0.00056 Score=44.59 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=57.9
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccC---CCCCccccCCCCCCCEEEEEe
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQD---HDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L---~d~~~L~~~gI~~~~~i~l~~ 77 (102)
+|.||..+|+.+.-....++||.+|...|... +.++....|+.... .+.+ +.+++|.++|+.+.++|+|.-
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP----rk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP----RRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS----CCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC----CcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999998888899999999999999887 77778888875432 1255 457999999999988887763
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.45 E-value=0.0017 Score=41.23 Aligned_cols=72 Identities=14% Similarity=-0.028 Sum_probs=57.0
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccC--CCCCccccCCCCCCCEEEEEee
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQD--HDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L--~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
+|.||..+|+.+.-....++||.+|...|... +..+....|+.... .+.+ +.+.+|.++|+.+.+++.|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fP----rk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFP----RRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSS----CCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCC----CcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 58899999998888888999999999999975 55667778876432 1144 4579999999999999877654
No 116
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.12 E-value=0.0019 Score=42.10 Aligned_cols=69 Identities=7% Similarity=0.204 Sum_probs=53.6
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhc-CCCCccEEEEeCCCCCCCCccC-CCCCccccCCCCCCCEEE
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQ-KLPCDRLILLLSSDHSCPMTQD-HDEVPLADCGVKDGSHIY 74 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~-gip~~~q~L~~~g~~~~~~~~L-~d~~~L~~~gI~~~~~i~ 74 (102)
+|.||..+|+...-....++||.+|...|.+.. +.......|+.... .+.+ +++++|.++|+.+..+++
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fP----rk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFP----NKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTT----TEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCC----CCCCCCCCCcHHHCCCcCceEEE
Confidence 588999999988889999999999999999863 35566677876543 2255 457999999999855443
No 117
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.79 E-value=0.0069 Score=35.93 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+........+++++..|++||-+ +.|+++..-.+..+|. .+..+.. .+||.+.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~------~v~~d~~------l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGR------PVPEDQS------VEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCC------CCCTTSS------SCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCE------ECCHHHC------CCCCEEEEEE
Confidence 8999999844556789999999999874 5789998887888998 6655542 2488888764
No 118
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.62 E-value=0.0067 Score=37.39 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=55.6
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKD 69 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~ 69 (102)
++.|+....+...+.|+|..++.+|--.|.++..++|+.-.|..... ....|+-+++|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~---~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQ---SQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSS---CCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCC---CCcccchhcchhhhhhhh
Confidence 56788887788899999999999999999999999999988876544 123789999999999996
No 119
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.59 E-value=0.017 Score=40.94 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=53.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCc-cEEEEe-CCCCCCCCccCC-CCCccccCCCCCCCEEEEEeecCCC
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCD-RLILLL-SSDHSCPMTQDH-DEVPLADCGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~-~q~L~~-~g~~~~~~~~L~-d~~~L~~~gI~~~~~i~l~~~~~~~ 82 (102)
+.+.++..+|+.+|++.+....+++++ .-||.. .+... + ..|. ++.+|.++++.+|..|.+-++..++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~-~-~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNT-Y-EQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSS-C-EECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCC-H-hhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 456778999999999999999999997 578754 32211 1 2555 4689999999999999999987665
No 120
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.34 E-value=0.051 Score=31.45 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=46.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+|+-..+ ...+++....|+.+|.+.+ ++++....+..++. ....+. -+++||.|.++-...
T Consensus 5 m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~------~v~~~~-----~L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 5 MKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQ------IVIDEE-----EIFDGDIIEVIRVIY 68 (70)
T ss_dssp EEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTE------ECCTTS-----BCCTTCEEEEEECTT
T ss_pred EEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCE------ECCCcc-----cCCCCCEEEEEeccc
Confidence 6677776532 3466777889999999875 56777777888988 776554 478999999886543
No 121
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.31 E-value=0.046 Score=40.70 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=55.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcC----CCCccEEEEeCCC-CCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQK----LPCDRLILLLSSD-HSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~g----ip~~~q~L~~~g~-~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
.+.|+.. +.+.++.+++++||.|....|.++.. .+.++--|+.... |+. ..-|++.++|+.|++++|+.+...
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~-~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKK-GIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGG-CEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCc-CEeccCCCCHHHhCCCCCceeecc
Confidence 3455665 77789999999999999999988764 3677778877332 110 114788899999999999988876
No 122
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.22 E-value=0.012 Score=41.30 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=52.6
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCc-cEEEEe-C-CCCCCCCccCCC-CCccccCCCCCCCEEEEEeecCCC
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCD-RLILLL-S-SDHSCPMTQDHD-EVPLADCGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~-~q~L~~-~-g~~~~~~~~L~d-~~~L~~~gI~~~~~i~l~~~~~~~ 82 (102)
+.+.++..+|+.+|++.+...++++++ ..||.. . .. + ...|++ +.+|.++++.+|..|.+-.+..++
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~-~--~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSN-T--FEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETT-E--EEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCC-C--eeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 567889999999999999999999987 577742 2 22 1 125555 679999999999999999987665
No 123
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.20 E-value=0.039 Score=32.14 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred CEEEEEeCCC-cEEEEEecCCCcHHHHHHHHHhhcCCCC--ccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTG-TLFYIQVENDATVADLKREIGAQQKLPC--DRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g-~~~~i~v~~~~TV~dLK~~I~~~~gip~--~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|.++|+.... +...+++ ...|+.+|.+.+....++.. ..-.+..++. ...+ .+..+++||.|.++-
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~------~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDH------LIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSS------EECC----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCE------EcCC----CCcCCCCCCEEEEEC
Confidence 8899998754 2234677 56899999999987544332 3345667777 5332 245689999999986
Q ss_pred ecCC
Q 041108 78 KPLD 81 (102)
Q Consensus 78 ~~~~ 81 (102)
...|
T Consensus 70 pvsG 73 (74)
T 3rpf_C 70 PVCG 73 (74)
T ss_dssp CBCC
T ss_pred CCCC
Confidence 5443
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.73 E-value=0.049 Score=33.14 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=41.7
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCP 52 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~ 52 (102)
|+|.|... -++.|.|.++.+..+|..+|.++.+++++...|.|...++.-
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~ 55 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNE 55 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSS
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCC
Confidence 35566664 688899999999999999999999999999999998864433
No 125
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.96 E-value=0.32 Score=29.60 Aligned_cols=68 Identities=24% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEEeCC------C-cEEEEEecCCCcHHHHHHHHHhhcC-CC----------CccEEEEeCCCCCCCCccCCCCCcc
Q 041108 1 MKVAVEILT------G-TLFYIQVENDATVADLKREIGAQQK-LP----------CDRLILLLSSDHSCPMTQDHDEVPL 62 (102)
Q Consensus 1 M~v~V~~~~------g-~~~~i~v~~~~TV~dLK~~I~~~~g-ip----------~~~q~L~~~g~~~~~~~~L~d~~~L 62 (102)
|+|.|+... | ....+++....||.+|.+.+..... +. .....+..+|. ....
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~------~v~~---- 79 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR------YVSW---- 79 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTB------CCCT----
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCE------ECCC----
Confidence 677777653 4 4567888788999999999987642 10 12345667777 5543
Q ss_pred ccCCCCCCCEEEEEeec
Q 041108 63 ADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 63 ~~~gI~~~~~i~l~~~~ 79 (102)
+..+++||.|.++-..
T Consensus 80 -~~~L~dGDeV~i~ppv 95 (98)
T 1vjk_A 80 -DEELKDGDVVGVFPPV 95 (98)
T ss_dssp -TCBCCTTCEEEEESCC
T ss_pred -CCCCCCCCEEEEECCC
Confidence 5567999999887543
No 126
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=94.06 E-value=0.28 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=45.2
Q ss_pred CEEEEEeCC------CcEEEEEecCCCcHHHHHHHHHhhcCC------CC-------ccEEEEeCCCCCCCCccCCCCCc
Q 041108 1 MKVAVEILT------GTLFYIQVENDATVADLKREIGAQQKL------PC-------DRLILLLSSDHSCPMTQDHDEVP 61 (102)
Q Consensus 1 M~v~V~~~~------g~~~~i~v~~~~TV~dLK~~I~~~~gi------p~-------~~q~L~~~g~~~~~~~~L~d~~~ 61 (102)
|+|+|+... |....+++ ...||.+|.+.+..++.- .. ....+..++. ...+..-
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~------~v~~~~~ 73 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDE------DVRFSGG 73 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTE------EGGGTTG
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCE------EccCcCC
Confidence 778888643 33334665 458999999999887530 10 1245667776 5443222
Q ss_pred cccCCCCCCCEEEEEeecCC
Q 041108 62 LADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 62 L~~~gI~~~~~i~l~~~~~~ 81 (102)
+ +..+++||.|.++-...|
T Consensus 74 ~-~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 74 L-ATAIADGDSVTILPAVAG 92 (93)
T ss_dssp G-GCBCCTTCEEEEEECCTT
T ss_pred C-CcCCCCCCEEEEECCCCC
Confidence 2 456899999998865443
No 127
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=93.98 E-value=0.058 Score=43.80 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=41.6
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccC
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADC 65 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~ 65 (102)
++...+.++++.|+.+++..|+..+|++++.|.+++.+. -.++++.....|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~-----~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASG-----LALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSS-----CCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccC-----CCCCCCcchhhh
Confidence 455678999999999999999999999999999988765 145666666655
No 128
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.94 E-value=0.079 Score=34.55 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=29.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccEEEEe
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRLILLL 45 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~ 45 (102)
..+.|-.++|+.+|+..|++..|+|+++|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457888899999999999999999999999865
No 129
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=93.89 E-value=0.32 Score=35.79 Aligned_cols=69 Identities=10% Similarity=-0.009 Sum_probs=46.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCC-CEEEEEeecCCCC
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDG-SHIYLFFKPLDDG 83 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~-~~i~l~~~~~~~~ 83 (102)
-....+.+++..|+.++++.+++.++++++.|.+++.+. .-.++...+...++-... .-+.++ ...|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 390 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR----RLVLEPGRLAQHFPKTTEENPIFVV-SREGNS 390 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS----EECCCSSCBTTSSCCCCSSSCEEEE-ECC---
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC----CCCCCCCCccccCCCCCCCCCeEEE-ecCCCc
Confidence 355678899999999999999999999999999999884 013355555666654332 333333 344443
No 130
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.34 E-value=0.27 Score=30.04 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=55.8
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC--CCCCceeEEE
Q 041108 14 YIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL--DDGSTQHSVF 90 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~--~~~~~~~~~~ 90 (102)
...++=..++..||..++.+.|++-+.-.+..-+. .|+++++|-+.+|+-...+.+.+... .+....++|.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~------~L~~~k~LvdQcVqgeGlVQinvqik~~~~~~~RiNIv 78 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDI------QLDPDRSLFDQGVKTDGTVQLSVQVISYQGMEPKLNIL 78 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTE------ECCTTSBTTTSSCCCCSEEEEEEEEECCTTCCCEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeecc------ccCCCccHHHhhcccccEEEEEEEEEecCCCCcceEEE
Confidence 33455567899999999999999999888888888 89999999999999888888887642 2223455543
No 131
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.08 E-value=0.17 Score=30.84 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred EEecCC-CcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 15 IQVEND-ATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 15 i~v~~~-~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
++++.. .||.+|.+.+ ++++....+..+|. .+..+ ...+..+++||.|.++-...
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~------iV~~~-~~~~~~L~dGD~Vei~~~V~ 85 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKE------IIGKE-RYHEVELCDRDVIEIVHFVG 85 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTE------EECGG-GTTTSBCCSSSEEEEEEECC
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCE------ECChh-hcCCcCCCCCCEEEEEcccc
Confidence 445565 8999998765 56676667778887 65432 23445689999999986543
No 132
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.03 E-value=1 Score=33.30 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCC-CccEEEEeCCCC---CCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLP-CDRLILLLSSDH---SCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip-~~~q~L~~~g~~---~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
.+.|...+|+...+.+++.+|+.|+-..|....|+. .+-.-|.+.... .....-|+.++++.+.+......+.+.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 577889999999999999999999999999999976 455667654310 1112356777888777765556665544
Q ss_pred e
Q 041108 78 K 78 (102)
Q Consensus 78 ~ 78 (102)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 3
No 133
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.74 E-value=0.8 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.046 Sum_probs=53.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc-cEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD-RLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~-~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
|.+.|...+| +..+.+++.+|+.|+-+.|.+..|+... -.-|.+... .....-|+.++++.+.+++.+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~-~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDT-KGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBT-TSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECC-CCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4678899998 5779999999999999999999998643 345655221 00112467788888876655555555443
No 134
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=92.46 E-value=0.76 Score=29.10 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=44.0
Q ss_pred CEEEEEeCC------C--cEEEEEecC---CCcHHHHHHHHHhhcCCCCccEEEEeC-CCCCCCCccC-CCCC--cc--c
Q 041108 1 MKVAVEILT------G--TLFYIQVEN---DATVADLKREIGAQQKLPCDRLILLLS-SDHSCPMTQD-HDEV--PL--A 63 (102)
Q Consensus 1 M~v~V~~~~------g--~~~~i~v~~---~~TV~dLK~~I~~~~gip~~~q~L~~~-g~~~~~~~~L-~d~~--~L--~ 63 (102)
|+|+|+... | +.+.++++. ..||.+|...+.+.+ |..+.+|+.. |+-.+-..++ ++.. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678888664 3 356688873 369999999998876 2222222211 2100000011 2221 11 2
Q ss_pred cCCCCCCCEEEEEeecCCC
Q 041108 64 DCGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 64 ~~gI~~~~~i~l~~~~~~~ 82 (102)
++.+++||.|.++-...++
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 5778999998886554444
No 135
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.18 E-value=0.79 Score=33.06 Aligned_cols=74 Identities=12% Similarity=-0.015 Sum_probs=52.5
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-ccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPC-DRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~-~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
.+.|...+| ++.+++++.+|+.||-+.|....|+.. +-.-|.+... ....-|+.++.+.+.+++.+....+..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~--~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK--DTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEET--TEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeC--CcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 577888898 678999999999999999999999864 4445555311 0012478888888877655555544443
No 136
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=91.75 E-value=1.4 Score=26.80 Aligned_cols=72 Identities=26% Similarity=0.269 Sum_probs=41.8
Q ss_pred CEEEEEeCC-------C-cEEEEEec--CCCcHHHHHHHHHhhcC-CCCcc------------EEEEeCCCCCCCCccCC
Q 041108 1 MKVAVEILT-------G-TLFYIQVE--NDATVADLKREIGAQQK-LPCDR------------LILLLSSDHSCPMTQDH 57 (102)
Q Consensus 1 M~v~V~~~~-------g-~~~~i~v~--~~~TV~dLK~~I~~~~g-ip~~~------------q~L~~~g~~~~~~~~L~ 57 (102)
|+|+|+... | +...+++. ...||.+|.+.+.+... ..+.- ..+..++. ..+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~------~~~ 75 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDT------DWE 75 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTE------EGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCE------Ecc
Confidence 567777542 3 44567776 67899999999988763 11110 12334443 211
Q ss_pred CCCccccCCCCCCCEEEEEeec
Q 041108 58 DEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 58 d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
.... .+..+++||.|.++-..
T Consensus 76 ~~~~-~d~~L~dgDeVa~~Ppv 96 (99)
T 2qjl_A 76 LEGE-KDYILEDGDIISFTSTL 96 (99)
T ss_dssp GGTG-GGCBCCTTCEEEEEECT
T ss_pred ccCC-CCcCcCCCCEEEEECCC
Confidence 0001 24568999998887543
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=91.66 E-value=1.1 Score=26.35 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=41.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC-C-----CC-----ccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 11 TLFYIQVENDATVADLKREIGAQQK-L-----PC-----DRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~g-i-----p~-----~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
....+++....||.+|.+.+..... + .. ....+..++. .... +..+++||.|.++-..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~------~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGE------AAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTE------ECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCE------ECCC-----CcccCCCCEEEEECCC
Confidence 5567888778999999999988752 1 00 1145667776 5543 4557899999998654
Q ss_pred CC
Q 041108 80 LD 81 (102)
Q Consensus 80 ~~ 81 (102)
.|
T Consensus 87 ~G 88 (89)
T 3po0_A 87 SG 88 (89)
T ss_dssp SC
T ss_pred CC
Confidence 33
No 138
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=91.44 E-value=1.2 Score=29.35 Aligned_cols=68 Identities=21% Similarity=0.085 Sum_probs=43.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcC--CC------CccEEEEe-CCCCCCCCccCCCC-------------CccccCCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQK--LP------CDRLILLL-SSDHSCPMTQDHDE-------------VPLADCGVK 68 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~g--ip------~~~q~L~~-~g~~~~~~~~L~d~-------------~~L~~~gI~ 68 (102)
..+.+.|=..+||.++|++|-...- +| +++.-|-+ .|..... .|.|. .+|..|+|.
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~l--iL~D~D~tS~~~~~wkrLNTL~HY~V~ 118 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHL--ILSDEDVTSEVQGLWRRLNTLQHYKVP 118 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEE--EECSSSTTCCEETTEEECCBHHHHTCC
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCce--EeeccCCcccccCCceeecchhccCCC
Confidence 4577888889999999999987633 33 33344432 2221111 24332 289999999
Q ss_pred CCCEEEEEeecC
Q 041108 69 DGSHIYLFFKPL 80 (102)
Q Consensus 69 ~~~~i~l~~~~~ 80 (102)
+|+++.++-+..
T Consensus 119 Dga~l~l~~~~~ 130 (138)
T 2r2o_A 119 DGATVALVPCLT 130 (138)
T ss_dssp TTCEEEEEEC--
T ss_pred CCCEEEEEECCC
Confidence 999999986643
No 139
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.29 E-value=1.1 Score=28.74 Aligned_cols=67 Identities=22% Similarity=0.209 Sum_probs=43.3
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc--CCC------CccEEEEe-CCCCCCCCccCCC---------C----CccccCCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQ--KLP------CDRLILLL-SSDHSCPMTQDHD---------E----VPLADCGVK 68 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~--gip------~~~q~L~~-~g~~~~~~~~L~d---------~----~~L~~~gI~ 68 (102)
..+.+.|-..+||.++|++|-... |.| ++...|-+ .|..... .|.| . .+|+.|+|.
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~--iL~D~D~ts~~~~~wkrLNTL~HY~V~ 104 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARM--ILQDEDITTKIENDWKRLNTLAHYQVP 104 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEE--EECSSSTTCCC---CCCCCBHHHHTCC
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCce--EeecCCCccEecCcceEeccccccCCC
Confidence 346777878999999999998752 333 33455543 3321111 1222 1 478899999
Q ss_pred CCCEEEEEeec
Q 041108 69 DGSHIYLFFKP 79 (102)
Q Consensus 69 ~~~~i~l~~~~ 79 (102)
+|+++.++-+.
T Consensus 105 dgatl~l~~~~ 115 (117)
T 4e74_A 105 DGSVVALVSKQ 115 (117)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEeCC
Confidence 99999998654
No 140
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.04 E-value=0.23 Score=28.10 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=39.1
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 9 TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 9 ~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
+|+. +++....|+.+|.+.+ ++++....+..++. ....+ ...+.-+++||.|.++-..
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~------~v~~~-~~~~~~L~~gD~v~i~~~V 63 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQ------IVPRE-QWAQHIVQDGDQILLFQVI 63 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTE------EECHH-HHTTCCCCTTEEECEEESC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCE------ECCch-hcCCcCCCCCCEEEEEeec
Confidence 4554 4556678999999876 46666667778887 55432 2234557899999988644
No 141
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.20 E-value=1.6 Score=34.74 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=54.3
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCC-CccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLP-CDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip-~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
+.+.|...+| ++.+.+++.+|+.+|-..|....|+. .+-.-|.+... ......|+.++++.+.+++.+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~-~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDS-KGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBT-TSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEec-CcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3577888898 57799999999999999999999986 44456665332 11112567888888877666655555544
No 142
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=90.09 E-value=2.5 Score=26.88 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--CCC------CccEEEEe-CCC-CCCCCccCCCC-------------CccccCC
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQ--KLP------CDRLILLL-SSD-HSCPMTQDHDE-------------VPLADCG 66 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~--gip------~~~q~L~~-~g~-~~~~~~~L~d~-------------~~L~~~g 66 (102)
+..+.+.|-..+||.++|++|-... |.| ++..-|-+ .|. ++ .|.|. .+|+.|+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~----iL~D~D~ts~~~~~wkrLNTL~HY~ 98 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQ----ILSDLDLTSQREGRWKRVNTLMHYN 98 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCE----ECCSSCTTSCC---CCCCCBHHHHT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCc----cccccCccceecCcceEecchhhcC
Confidence 3557778888999999999998752 233 33444544 222 11 33321 3788999
Q ss_pred CCCCCEEEEEe
Q 041108 67 VKDGSHIYLFF 77 (102)
Q Consensus 67 I~~~~~i~l~~ 77 (102)
|.+|+++.+.-
T Consensus 99 V~dgatl~l~~ 109 (111)
T 4e71_A 99 VRDGATLILSK 109 (111)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999998864
No 143
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=89.89 E-value=0.4 Score=27.96 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=44.1
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+|+| +|+.+.+ ...|+.+|-+. .++++..--+..+|. ++..+ ...+.-+++||.|.++-..-
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~------iVpr~-~~~~~~L~dGD~veIv~~Vg 63 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYD------VVPRG-KWDETPVTAGDEIEILTPRQ 63 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSS------EECHH-HHTTCBCCTTCEEEEECCCC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCE------ECChH-HcCcccCCCCCEEEEEcccc
Confidence 55544 3665544 56899998764 578888778888998 66432 34456689999999986554
Q ss_pred C
Q 041108 81 D 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 64 G 64 (73)
T 2kl0_A 64 G 64 (73)
T ss_dssp C
T ss_pred C
Confidence 4
No 144
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=89.86 E-value=2.8 Score=27.24 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=44.6
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhc--CCC------CccEEEEe-CCCCCCCCccCCCC-------------CccccCCC
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQ--KLP------CDRLILLL-SSDHSCPMTQDHDE-------------VPLADCGV 67 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~--gip------~~~q~L~~-~g~~~~~~~~L~d~-------------~~L~~~gI 67 (102)
+..+.+.|=..+||.++|++|-... ++| ++++.|-+ .|....+ .|.|. .+|..|+|
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~--iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSY--ILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEE--ECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCce--EeecCCCcceecCceeEeccccccCC
Confidence 4557778888999999999998762 233 34555644 3321111 23321 47899999
Q ss_pred CCCCEEEEEee
Q 041108 68 KDGSHIYLFFK 78 (102)
Q Consensus 68 ~~~~~i~l~~~ 78 (102)
.+|+++.+..+
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999999854
No 145
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=89.65 E-value=0.37 Score=28.52 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=46.7
Q ss_pred CEEEEEeCCCcEEEEEec--CCCcHHHHHHHHHhhcCCC-CccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVE--NDATVADLKREIGAQQKLP-CDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~--~~~TV~dLK~~I~~~~gip-~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|+|+|+ |+.+ +++ ...|+.+|-+.+ +++ +..--+..+|. ++..+ ...+.-+++||.|.++.
T Consensus 1 M~I~vN---Ge~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~------iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGE------VLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTE------ECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCE------ECChH-HcCcccCCCCCEEEEEe
Confidence 555554 5644 455 568999988654 677 66666788887 66443 34556678999999987
Q ss_pred ecCCCCCc
Q 041108 78 KPLDDGST 85 (102)
Q Consensus 78 ~~~~~~~~ 85 (102)
..-|+...
T Consensus 65 ~VgGG~~~ 72 (78)
T 2k5p_A 65 FMGGGKLE 72 (78)
T ss_dssp CCCCSCCC
T ss_pred eecCCCch
Confidence 66555443
No 146
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=89.46 E-value=1.3 Score=28.91 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred EEEecC----CCcHHHHHHHHHhhcCCCC-------ccEEEEeCCCCCCCCccC-CCCCccccCCCCCCCEEEEEe
Q 041108 14 YIQVEN----DATVADLKREIGAQQKLPC-------DRLILLLSSDHSCPMTQD-HDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 14 ~i~v~~----~~TV~dLK~~I~~~~gip~-------~~q~L~~~g~~~~~~~~L-~d~~~L~~~gI~~~~~i~l~~ 77 (102)
.+.|+. .+|+.+|-+.+..++|+.. ..++|+|.-- .- .-+++|+++|+++|+.+.+.=
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D------fDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD------FEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT------BCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC------ccccccCcHHHcCcCCCcEEEEEc
Confidence 455654 4799999888988888753 1244444433 11 334899999999999998873
No 147
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=89.10 E-value=0.54 Score=36.99 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=29.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccEEEEe
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRLILLL 45 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~ 45 (102)
..+.|..++|+.+|++.|++..|+|+++|||..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367888999999999999999999999999753
No 148
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=88.81 E-value=1.3 Score=25.45 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=37.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcC-----CCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 12 LFYIQVENDATVADLKREIGAQQK-----LPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~~g-----ip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
...++ ....||.+|.+.+..... ++.....+..+|. .... +..+++||.|.++-..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~------~v~~-----~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQT------LVSF-----DHPLTDGDEVAFFPPV 78 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTE------ECCT-----TCBCCTTCEEEEECCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCE------ECCC-----CCCCCCCCEEEEeCCC
Confidence 44555 567899999999886532 2233345777887 5543 4457899999887544
No 149
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=88.53 E-value=0.58 Score=29.54 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=42.4
Q ss_pred CEEEEEeCC------CcEEEEEecC----CCcHHHHHHHHHhhcCCCCccEEEEe-CC--CCCCC-CccCCCCCcc----
Q 041108 1 MKVAVEILT------GTLFYIQVEN----DATVADLKREIGAQQKLPCDRLILLL-SS--DHSCP-MTQDHDEVPL---- 62 (102)
Q Consensus 1 M~v~V~~~~------g~~~~i~v~~----~~TV~dLK~~I~~~~gip~~~q~L~~-~g--~~~~~-~~~L~d~~~L---- 62 (102)
|+|.|+... |+...++++. .+||.+|-..+.+.+ +..+-.|+. +| . =+| .-+|=++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~-lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQT-LRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSS-BCTTEEEEESSSBHHHHT
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcc-cCCCeEEEECCeeeeccC
Confidence 567777654 3445677763 359999999888875 222222321 12 1 001 0012111211
Q ss_pred -ccCCCCCCCEEEEEeecCCCCCc
Q 041108 63 -ADCGVKDGSHIYLFFKPLDDGST 85 (102)
Q Consensus 63 -~~~gI~~~~~i~l~~~~~~~~~~ 85 (102)
.++.+++||.|.++ +...++..
T Consensus 82 gldt~L~dgD~V~fi-stlhg~~~ 104 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFI-STLHGGLE 104 (110)
T ss_dssp SSCCCCCSSCEEEEE-ECCCCC--
T ss_pred CcccCCCCcCEEEEe-CCCccccc
Confidence 25778999997775 45555443
No 150
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=87.61 E-value=1.3 Score=24.69 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 9 TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 9 ~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
+|+.+. + ...|+.+|.+.+ ++++....+..++. ....+ ...+.-+++||.|.++....
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~------~v~~~-~~~~~~L~dgD~v~i~~~V~ 62 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEE------AFLGL-EVPDRPLRDGDVVEVVALMQ 62 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTE------EEEGG-GCCCCCCCTTCEEEEEECCC
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCE------ECCcc-ccCCcCCCCCCEEEEEeecc
Confidence 566554 4 568999999876 46667677778887 65432 23345689999999986543
No 151
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=87.25 E-value=3.3 Score=25.90 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=53.2
Q ss_pred EEEEEeCCC---cEEEEEecCCCcHHHHHHHHHhhcCCCCc--cEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 2 KVAVEILTG---TLFYIQVENDATVADLKREIGAQQKLPCD--RLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 2 ~v~V~~~~g---~~~~i~v~~~~TV~dLK~~I~~~~gip~~--~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
+|+|...+. ..+.+.|..+.-|+-+..++-+...++.+ .--|-...+ .+ =++.-..+|..|||+.++.+++.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k-~~--WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQK-RC--WLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTT-TE--EECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhh-ch--hhhhhhhhhhhhceeeeeeeecc
Confidence 466777554 55889999999999999999988877644 334433332 11 15677789999999999998876
Q ss_pred e
Q 041108 77 F 77 (102)
Q Consensus 77 ~ 77 (102)
-
T Consensus 98 p 98 (102)
T 2kmc_A 98 P 98 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 152
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=87.14 E-value=1.4 Score=25.14 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=39.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccE--EEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRL--ILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q--~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
....+++....||.+|.+.+..... ..... .+..+|. ....+ ..+++||.|.++-..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~------~v~~~-----~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEE------FVQKS-----DFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTE------EECTT-----SEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCE------ECCCC-----CCcCCCCEEEEECCC
Confidence 3456777778899999999887642 01223 5777887 66543 457899999887543
No 153
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=86.93 E-value=3.6 Score=24.91 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=42.7
Q ss_pred CEEEEEeCC------CcEEEEEecCCCcHHHHHHHHHhhcC-CCC-----c----cE-------EEEeCCCCCCCCccCC
Q 041108 1 MKVAVEILT------GTLFYIQVENDATVADLKREIGAQQK-LPC-----D----RL-------ILLLSSDHSCPMTQDH 57 (102)
Q Consensus 1 M~v~V~~~~------g~~~~i~v~~~~TV~dLK~~I~~~~g-ip~-----~----~q-------~L~~~g~~~~~~~~L~ 57 (102)
|+++|+... |+ ..++++ ..||.+|.+.+..... +.. . .. .+..+|. ...
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~------~v~ 75 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGN------NIR 75 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTS------CGG
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCE------Ecc
Confidence 678888764 32 133444 5899999999987742 111 0 12 5677776 543
Q ss_pred CCCccccCCCCCCCEEEEEeec
Q 041108 58 DEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 58 d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
.... .+..+++||.|.++-..
T Consensus 76 ~~~~-~~~~L~~gD~V~i~ppv 96 (99)
T 2l52_A 76 HLEG-LETLLKDSDEIGILPPV 96 (99)
T ss_dssp GTTS-TTSCCCTTEEEEEECCC
T ss_pred ccCC-CCCCCCCCCEEEEECCC
Confidence 2222 24457999999887543
No 154
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=86.89 E-value=1.3 Score=31.99 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=50.8
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC-ccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPC-DRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~-~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
|.+.|..++|+...+++++.+|+.||-..|.+..|+.. +-.-|.+... +....-|+.++.+.+........+.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~-~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN-ATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEE-TTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcC-CCccchhccchhHHHhcCCCCcEEEEE
Confidence 46789999999999999999999999999999999864 3355654321 001124677777776543333344433
No 155
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=86.88 E-value=2.1 Score=23.97 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
|++.|...+|+. .++....|+.+|-..+....+ ....-...+|. ..+-+ +.+.+|+.|.++-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~------lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHK------LVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTE------ECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCE------EeCCC-----cCcCCCCEEEEEE
Confidence 888999888886 456677899999887743321 11222345776 55443 3456778777764
No 156
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=85.78 E-value=0.71 Score=28.67 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=42.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcC--CC-Cc--------cEEEEeCCCCCCCCccC------CCCCccccCCCCCCCEEE
Q 041108 12 LFYIQVENDATVADLKREIGAQQK--LP-CD--------RLILLLSSDHSCPMTQD------HDEVPLADCGVKDGSHIY 74 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~~g--ip-~~--------~q~L~~~g~~~~~~~~L------~d~~~L~~~gI~~~~~i~ 74 (102)
...+++++++|+.+|-+.+.+... +. |+ ...|+..+. +.| +-+++|.++|+.+|+.|+
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~p-----p~Lee~Tr~NL~k~l~eLgl~~g~ei~ 80 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSV-----TSIEERTRPNLSKTLKELGLVDGQELA 80 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSC-----HHHHHHHHHHHHSBSGGGTCCTTCEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCc-----HHHHHHhHhhhhCCHHHhCCCCCCEEE
Confidence 457899999999999999998433 21 22 334444332 134 235779999999999999
Q ss_pred EE
Q 041108 75 LF 76 (102)
Q Consensus 75 l~ 76 (102)
+.
T Consensus 81 Vt 82 (98)
T 1y8x_B 81 VA 82 (98)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 157
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.87 E-value=2.6 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=32.0
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
|.|-..+|....+.|++.+|+.|+-+.+..+.++..+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 4555678999999999999999999999999887644
No 158
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=84.81 E-value=3.1 Score=25.60 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=42.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhh---cCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCCC
Q 041108 12 LFYIQVENDATVADLKREIGAQ---QKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLDD 82 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~---~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~~ 82 (102)
.+.+++....||.++-++..-. ..++.+...+-.+|+ ... .+.-+++||.|.++-....+
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~------~v~-----~d~~L~dGDRVEIyrpl~~D 89 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSR------PIK-----LTDVLKEGDRIEIYRPLLAD 89 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEEC------SCC-----TTCBCCTTCEEEECCCCC--
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCE------ECC-----CCccCCCCCEEEEEecccCC
Confidence 4567888999999998877642 234555677888887 665 34447899999998765543
No 159
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.53 E-value=2.1 Score=26.59 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred EEEEEeCC-------CcEEEEEecCCCcHHHHHHHHHhhcCCC
Q 041108 2 KVAVEILT-------GTLFYIQVENDATVADLKREIGAQQKLP 37 (102)
Q Consensus 2 ~v~V~~~~-------g~~~~i~v~~~~TV~dLK~~I~~~~gip 37 (102)
+|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 45555542 4568899999999999999999998875
No 160
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.77 E-value=5.4 Score=24.19 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=36.1
Q ss_pred EEEEeC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCcc-EEEEeCCC
Q 041108 3 VAVEIL-TGTLFYIQVENDATVADLKREIGAQQKLPCDR-LILLLSSD 48 (102)
Q Consensus 3 v~V~~~-~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~-q~L~~~g~ 48 (102)
+.||.. +|..+.+.++++.+..+|.+++.+..+++... ..+.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 445543 47888999999999999999999999987554 56666654
No 161
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=82.34 E-value=5.4 Score=23.14 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEecCCCcHHHHHHHHHhhcC------C-C----CccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 14 YIQVENDATVADLKREIGAQQK------L-P----CDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~g------i-p----~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
.++++...||.+|.+.+..... + . .....+..+|. ...... -.+..+++||.|.++-..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~------~v~~~~-~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGN------NITSMK-GLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSS------BGGGTC-SSSCBCCTTCEEEEECCT
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCE------EccccC-CCCcCCCCCCEEEEeCCC
Confidence 3456666899999999988742 1 0 13345777887 554222 124458999999887543
No 162
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.96 E-value=13 Score=30.12 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=43.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc--CCC------CccEEEEe-CCCCCCCCccCCCC-------------CccccCCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQ--KLP------CDRLILLL-SSDHSCPMTQDHDE-------------VPLADCGVK 68 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~--gip------~~~q~L~~-~g~~~~~~~~L~d~-------------~~L~~~gI~ 68 (102)
..+.+.|-..+||.++|++|-... |+| +++.-|-+ .|..... .|.|. .+|..|+|.
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~--iL~D~D~ts~~~~~wkrLNTL~HY~V~ 324 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARI--ILQDEDITTKIECDWKRVNSLAHYQVT 324 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEE--EECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCce--eeccCCccccccCceeEecchhhcCCC
Confidence 557788888999999999998762 232 34454533 2321111 23221 478999999
Q ss_pred CCCEEEEEeec
Q 041108 69 DGSHIYLFFKP 79 (102)
Q Consensus 69 ~~~~i~l~~~~ 79 (102)
+|+++.++-+.
T Consensus 325 Dga~v~L~p~~ 335 (627)
T 3ig3_A 325 DGSLVALVPKQ 335 (627)
T ss_dssp TTCEEEEEEC-
T ss_pred CCceEEEEecc
Confidence 99999998665
No 163
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=80.33 E-value=7.5 Score=23.51 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred EEEEEeCCCc-EEEEEecC-CCcHHHHHHHHHhhcCCCCccEEE-EeCC
Q 041108 2 KVAVEILTGT-LFYIQVEN-DATVADLKREIGAQQKLPCDRLIL-LLSS 47 (102)
Q Consensus 2 ~v~V~~~~g~-~~~i~v~~-~~TV~dLK~~I~~~~gip~~~q~L-~~~g 47 (102)
.|+-|..+.+ ...+.++. ..+|.|||++|..+.++...+.-| +++.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na 56 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNA 56 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEES
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence 3666777664 45688877 589999999999998886555544 3443
No 164
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=79.83 E-value=6.8 Score=25.14 Aligned_cols=63 Identities=21% Similarity=0.224 Sum_probs=47.3
Q ss_pred EEEEecCCCcHHHHHHHH-HhhcCCCCc-------cEEEEeCCCCCCCCccC--CCCCccccCCCCCCCEEEEEeecCC
Q 041108 13 FYIQVENDATVADLKREI-GAQQKLPCD-------RLILLLSSDHSCPMTQD--HDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I-~~~~gip~~-------~q~L~~~g~~~~~~~~L--~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
+.+-+.++++.++|-+.+ ...++..|+ .-.+..+|+ .. +.+++|.+.|+.+-+.|.+.-..+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~------pftPD~~kSLaenG~~HKs~lrf~TPgL~ 112 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDE------PFTPKADASLKEQGIDHKSMLTVTTPGLK 112 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTE------EECCCTTSBTTTTTCCTTEEEEEECTTCC
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCc------cCCCChhhhHHHcCCCchheEEEeCCCcC
Confidence 678999999999988554 444554444 346888888 44 6779999999999999988755443
No 165
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=77.85 E-value=4.3 Score=31.63 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=38.9
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCC--ccEEEEeC
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPC--DRLILLLS 46 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~--~~q~L~~~ 46 (102)
|.+.|...+|+...+.+++..|+.||-..|....|+.. +..-|.+.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 35788899999999999999999999999999999974 44556553
No 166
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.81 E-value=10 Score=23.66 Aligned_cols=69 Identities=10% Similarity=0.203 Sum_probs=48.3
Q ss_pred eCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE---eCCCCCCCCccCCCCCccccCCCCCCCEEEEEeec
Q 041108 7 ILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL---LSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKP 79 (102)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~---~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~ 79 (102)
..+.+...+.+..+.|+.+++..++++.+...+.+.|+ ++|. .. .++++..--.-.+.-+..|++..+-
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGE--k~--~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 16 ITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGE--KH--ELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp CSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCC--CC--BCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred eccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCc--Ee--ecCCcceEEEeeccccceEEEeehH
Confidence 34556677888889999999999999999887788885 3444 22 5555543333334556788887663
No 167
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=77.48 E-value=0.42 Score=27.87 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.9
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 14 YIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
.+++....||.+|.+.+ ++++....+..+|. ....+ .-+++||.|.++-.
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~------~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGK------VVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTE------EECSS-----SCCCSSCCCBCSCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCE------ECCCC-----CCcCCCCEEEEEcc
Confidence 34566778999998765 45666666778887 66543 45788888877643
No 168
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=77.32 E-value=14 Score=29.96 Aligned_cols=67 Identities=21% Similarity=0.098 Sum_probs=42.4
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhc--CCC------CccEEEEe-CCCCCCCCccCCCC-------------CccccCCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQ--KLP------CDRLILLL-SSDHSCPMTQDHDE-------------VPLADCGVK 68 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~--gip------~~~q~L~~-~g~~~~~~~~L~d~-------------~~L~~~gI~ 68 (102)
..+.+.|-..+||.++|++|-... |+| +++.-|-+ .|..... .|.|. .+|+.|+|.
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~--iL~D~D~ts~~~~~wkrLNTL~HY~V~ 351 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHL--ILSDEDVTSEVQGLWRRLNTLQHYKVP 351 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEE--EECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCce--eecccCccceecCcceeecchhhcCCC
Confidence 346778888999999999998642 333 33444433 2220000 23332 488999999
Q ss_pred CCCEEEEEeec
Q 041108 69 DGSHIYLFFKP 79 (102)
Q Consensus 69 ~~~~i~l~~~~ 79 (102)
+|+++.+.-+.
T Consensus 352 dga~v~L~p~~ 362 (644)
T 3hm6_X 352 DGATVALVPCL 362 (644)
T ss_dssp TTCEEEEEEC-
T ss_pred CCcEEEEEecc
Confidence 99999987554
No 169
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=75.78 E-value=8.3 Score=23.52 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=33.2
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccEE-EEeCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRLI-LLLSSD 48 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~-L~~~g~ 48 (102)
..+.+.|++.+|=.++|++++..+++.+..-. +...|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 57899999999999999999999999998875 456665
No 170
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=74.23 E-value=4.5 Score=24.36 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=29.9
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEE
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLIL 43 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L 43 (102)
...+.+.|++.+|=.++|++++..+++.+..-.-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 3568999999999999999999999999876654
No 171
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=74.18 E-value=15 Score=23.74 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=40.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHhh-c---CCCC----ccEEEEe-CCCCCC------C-CccCCCC----CccccCCCCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQ-Q---KLPC----DRLILLL-SSDHSC------P-MTQDHDE----VPLADCGVKDG 70 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~-~---gip~----~~q~L~~-~g~~~~------~-~~~L~d~----~~L~~~gI~~~ 70 (102)
..+.+.|-..+||.++|++|-.. + |+|- +.+.|-+ .|.... . ...+++. .+|+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45778888899999999988765 2 5543 3444432 221000 0 0011222 37888999999
Q ss_pred CEEEEE
Q 041108 71 SHIYLF 76 (102)
Q Consensus 71 ~~i~l~ 76 (102)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999876
No 172
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=73.15 E-value=6.1 Score=31.84 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=38.2
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCC-CccEEEEe
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKREIGAQQKLP-CDRLILLL 45 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip-~~~q~L~~ 45 (102)
|.+.|...+|+...+++++.+|+.|+-..|....|+. .+-.-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4578899999999999999999999999999999975 44455655
No 173
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=73.11 E-value=5.1 Score=26.83 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEEecCCCcHHHHHHHHHhhcC-CC---------CccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCCCC
Q 041108 14 YIQVENDATVADLKREIGAQQK-LP---------CDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLDDG 83 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~g-ip---------~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~~~ 83 (102)
.++++. .||.+|.+.+...+. +. .....+..+|. ......- .+..+++||.|.++-...|+.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~------~v~~~~~-~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGR------DVRYLQG-LSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTE------EGGGTTG-GGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCE------ECCCcCC-CccCCCCCCEEEEECcccccc
Confidence 445655 899999999987742 10 12234667776 5544322 245689999999986665554
Q ss_pred C
Q 041108 84 S 84 (102)
Q Consensus 84 ~ 84 (102)
.
T Consensus 89 ~ 89 (168)
T 1v8c_A 89 F 89 (168)
T ss_dssp E
T ss_pred c
Confidence 3
No 174
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=72.10 E-value=4.8 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccEEE-EeCCC
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRLIL-LLSSD 48 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L-~~~g~ 48 (102)
+.+.|++.+|=.++|++|+..+++.+..-.- ...|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 8899999999999999999999999988754 44554
No 175
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=72.05 E-value=11 Score=22.68 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=32.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEE-EeCCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLIL-LLSSD 48 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L-~~~g~ 48 (102)
+|.+-.. +-.+-|.|+++.+..+|+.+|..+..+. .+.+ .+.+.
T Consensus 14 KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde 58 (85)
T 1ip9_A 14 KIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFD 58 (85)
T ss_dssp EEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSS
T ss_pred EEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCC
Confidence 3333333 4678999999999999999999998883 4443 44544
No 176
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=69.79 E-value=10 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=32.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccEE-EEeCCC
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRLI-LLLSSD 48 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~-L~~~g~ 48 (102)
..+.+.|+..+|=.++|++++..+++.+..-. +...|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 67899999999999999999999999988775 445554
No 177
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=68.79 E-value=11 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=31.2
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
+.|-..+|....+.|++.+|..|+-+.+..+.+++.+
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~ 73 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCN 73 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCC
Confidence 4455667888999999999999999999999997654
No 178
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.77 E-value=13 Score=22.38 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=30.4
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
...+.+.|+..+|=.++|++++..+++.+..-.-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 35788999999999999999999999998776543
No 179
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=67.69 E-value=12 Score=23.32 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred EEEEEeC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 2 KVAVEIL-TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 2 ~v~V~~~-~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
.|+||.. .|+++.|++.-..+..||..++.+.+|-..+ |.|.+.
T Consensus 8 dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~ld---L~y~n~ 52 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD---LHYTNN 52 (103)
T ss_dssp EEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCEE---EEECSS
T ss_pred cEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCeee---EEEecc
Confidence 3566666 4788999999999999999999999998554 555443
No 180
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=66.93 E-value=18 Score=21.74 Aligned_cols=62 Identities=10% Similarity=0.201 Sum_probs=49.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhh-cC--C-C-CccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 12 LFYIQVENDATVADLKREIGAQ-QK--L-P-CDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~-~g--i-p-~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
...+.|+.++|+.++=++++.- .| + | |.-.++..+|.. ..+..+.++++.||++-+.|.+++
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~----~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRST----ELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCS----CBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCc----ccCCCCCEeeccCCCcceEEEEEE
Confidence 3568999999999999888764 33 2 2 346788888881 148999999999999999998876
No 181
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=66.63 E-value=18 Score=21.68 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=48.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh-cC--C--CCc-cEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 12 LFYIQVENDATVADLKREIGAQ-QK--L--PCD-RLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~-~g--i--p~~-~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
...+.|+.++|+.++=++++.- .| + .|. -.++.+.|. ...+..+.++++.||++-+.|.+++.
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~----~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHED----GTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTT----CCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCC----ccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3578999999999999888764 33 3 233 467778883 11889999999999999999988764
No 182
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=65.55 E-value=23 Score=22.48 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=27.8
Q ss_pred cEEEEEecCC-----------CcHHHHHHHHHhhc-CCCCccEEEEeCCC
Q 041108 11 TLFYIQVEND-----------ATVADLKREIGAQQ-KLPCDRLILLLSSD 48 (102)
Q Consensus 11 ~~~~i~v~~~-----------~TV~dLK~~I~~~~-gip~~~q~L~~~g~ 48 (102)
..+.+.++.+ .+..+|+.+|...+ ++......|.|...
T Consensus 36 EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDE 85 (117)
T 2ktr_A 36 EIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAE 85 (117)
T ss_dssp EEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECT
T ss_pred cEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 5567777532 49999999999998 46666677777664
No 183
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=65.37 E-value=17 Score=26.31 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=30.5
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
+.|-..+|....+.|++++|+.||-+.+..+.+....
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~ 70 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYS 70 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCC
Confidence 4455668899999999999999999999988876533
No 184
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=64.02 E-value=3.3 Score=32.56 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=49.7
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCC-CCCccccC--CCCCCCEEEEEeecC
Q 041108 15 IQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDH-DEVPLADC--GVKDGSHIYLFFKPL 80 (102)
Q Consensus 15 i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~-d~~~L~~~--gI~~~~~i~l~~~~~ 80 (102)
+-++..++|++|-..|.+..|+|++.--.+|.--...-...++ .+.++.++ ++.+|+.|.+.....
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~ 219 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDP 219 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCG
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCC
Confidence 5688889999999999999999998765555321000123566 68899999 999999998887544
No 185
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=59.99 E-value=2 Score=27.29 Aligned_cols=63 Identities=8% Similarity=0.085 Sum_probs=45.0
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCcc--EEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDR--LILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~--q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
..+.+.|..+.-|+-+..++-+...++.+. .-|-...+ .+ =++.-..+|..|||+.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k-~~--WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKK-RT--WLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTT-TE--EECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhh-ch--hhhcchhhHhhhceeccccceec
Confidence 567889999999999999999888776442 22322221 00 15677789999999999887765
No 186
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=58.20 E-value=24 Score=20.48 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=39.7
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEe
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFF 77 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~ 77 (102)
+|+|-+.+|..+ ++...+|+.|+=..|+...+-.. .--..+|+ ..+- ++.+++|+.|.++-
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~------~v~L-----~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGR------IVPI-----DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTE------EECT-----TCBCCTTCBEEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCE------EcCC-----CcccCCCCEEEEEc
Confidence 478888888754 56677899999888876554222 12234666 4433 34468888888764
No 187
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=56.89 E-value=15 Score=24.30 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=23.2
Q ss_pred CEEEEEe-CCCcEEEEEecCCCcHHHHHHHHH
Q 041108 1 MKVAVEI-LTGTLFYIQVENDATVADLKREIG 31 (102)
Q Consensus 1 M~v~V~~-~~g~~~~i~v~~~~TV~dLK~~I~ 31 (102)
|...++. .||+.+.+++++..|+.++-....
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~ 32 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRETV 32 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHHTT
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHHcC
Confidence 5544443 289999999999999999876543
No 188
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=56.81 E-value=25 Score=21.97 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecCC
Q 041108 8 LTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPLD 81 (102)
Q Consensus 8 ~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~~ 81 (102)
..++...+...+.-++.|+-.-|-.++|+..+...+...|.. ..|+-..+++.. +|..+.+-.....
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~----~pLDl~~pVs~l---dgqrl~Le~~~~~ 91 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEK----QPMDLENPVSSV---ASQTLVLDTPPDA 91 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCS----SCCCTTSBGGGS---SSSCEEECCCSCC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCc----cccccCCchhhh---cCcEEEEeeCCcc
Confidence 567888899999999999999999999999888878777772 356666777666 5666666654443
No 189
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=55.87 E-value=15 Score=23.50 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=41.3
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCccEE-EEeCCCCCCCCccCCCCCcccc----CCCCCCCEEEEEeec
Q 041108 14 YIQVENDATVADLKREIGAQQKLPCDRLI-LLLSSDHSCPMTQDHDEVPLAD----CGVKDGSHIYLFFKP 79 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~gip~~~q~-L~~~g~~~~~~~~L~d~~~L~~----~gI~~~~~i~l~~~~ 79 (102)
.+-|..+.||+++...|-...++++++-- |+.++. ....+.++++ ++- ++..+++....
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~------lPs~s~~m~~lY~~~kd-eDGfLY~~Ys~ 119 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV------IPPTSATMGSLYQEHHD-EDFFLYIAFSD 119 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTB------CCCTTSBHHHHHHHHCC-TTSCEEEEEES
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCc------cCCccchHHHHHHHcCC-CCCeEEEEecC
Confidence 34688899999999999999999888754 444544 4455666654 222 45677777654
No 190
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=55.86 E-value=31 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.7
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhh
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQ 33 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~ 33 (102)
|.+=..+|-...+++..++|+.++|..+-++
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 4445568988899999999999999987766
No 191
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=55.61 E-value=28 Score=24.74 Aligned_cols=37 Identities=24% Similarity=0.120 Sum_probs=28.1
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
|.|-..+|....+.|++++|+.||-..+..+.++..+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~ 47 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDD 47 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-----
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCC
Confidence 4555678899999999999999999999888776533
No 192
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=54.48 E-value=23 Score=23.63 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=29.6
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEE
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRLIL 43 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L 43 (102)
..+.+.|+..+|=.++|++|+..+++.+..-.-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 126 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT 126 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEe
Confidence 568899999999999999999999999887654
No 193
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=54.35 E-value=14 Score=22.40 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=31.9
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHh---------hcCCCCccEEEE
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGA---------QQKLPCDRLILL 44 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~---------~~gip~~~q~L~ 44 (102)
+.+...+|.+|.++|..+.-+..-|+.|+. .+++..+..+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcvw 89 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVEKLCVW 89 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheeee
Confidence 567788999999999999888877777665 366677665553
No 194
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=53.24 E-value=23 Score=21.87 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=38.5
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCccE-EEEeCCCCCCCCccCCCCCccccC---CCCCCCEEEEEe
Q 041108 14 YIQVENDATVADLKREIGAQQKLPCDRL-ILLLSSDHSCPMTQDHDEVPLADC---GVKDGSHIYLFF 77 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~gip~~~q-~L~~~g~~~~~~~~L~d~~~L~~~---gI~~~~~i~l~~ 77 (102)
.+-|..+.|++++...|....+++++.- -|+.++. ....+.+++++ --.++..+++..
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~------~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNT------IPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTB------CCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCE------ecCccChHHHHHHHcCCCCCEEEEEE
Confidence 3567778999999999999999988765 4444554 44455666552 111355776654
No 195
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=52.72 E-value=15 Score=23.30 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=41.1
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCccE-EEEeCCCCCCCCccCCCCCcccc----CCCCCCCEEEEEeec
Q 041108 15 IQVENDATVADLKREIGAQQKLPCDRL-ILLLSSDHSCPMTQDHDEVPLAD----CGVKDGSHIYLFFKP 79 (102)
Q Consensus 15 i~v~~~~TV~dLK~~I~~~~gip~~~q-~L~~~g~~~~~~~~L~d~~~L~~----~gI~~~~~i~l~~~~ 79 (102)
+-|..+.||+++...|....++++++- -|+.++. +...+.++++ +. .++..+++....
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~------~p~~~~~m~~lY~~~k-d~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT------VLPSSAQMADIYSKYK-DEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE------ECCTTSBHHHHHHHHC-CTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc------CCCccchHHHHHHHcC-CCCCeEEEEEec
Confidence 468889999999999999999988774 4445655 5556666654 22 235677777654
No 196
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=52.21 E-value=20 Score=25.71 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=32.6
Q ss_pred CEEEEEeCCCcEEEEEecC--CCcHHHHHHHHHhhcCCCCc---cEEEEeCC
Q 041108 1 MKVAVEILTGTLFYIQVEN--DATVADLKREIGAQQKLPCD---RLILLLSS 47 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~--~~TV~dLK~~I~~~~gip~~---~q~L~~~g 47 (102)
+++.|...+|+...++++. .+|+.||- +..|++.. -.-|.+.+
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~~~ 53 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWICS 53 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEEEC
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEEEC
Confidence 4788999999999999999 89999994 34677643 34555544
No 197
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=51.65 E-value=27 Score=22.91 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=29.5
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEE
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRLIL 43 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L 43 (102)
..+.+.|+..++=.++|++|+..+++.+..-.-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 112 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNT 112 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 468899999999999999999999999887654
No 198
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=51.65 E-value=30 Score=22.09 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHHHhhcCCCCc------cEEEE---eCCCCCCCCccCCCCC--ccccCCCCCCCEEEEEe
Q 041108 9 TGTLFYIQVENDATVADLKREIGAQQKLPCD------RLILL---LSSDHSCPMTQDHDEV--PLADCGVKDGSHIYLFF 77 (102)
Q Consensus 9 ~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~------~q~L~---~~g~~~~~~~~L~d~~--~L~~~gI~~~~~i~l~~ 77 (102)
+.+...+.+..+.|+.+++..++.+.+...+ .+.|+ ++|. +-.++++. ....++ -+..|++..
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGE----k~vlqp~d~sv~tsL~--~NgRLfvc~ 91 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGE----KVLLQPTEDCVFTALG--INSHLFACT 91 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCC----CEECCTTCSCHHHHSC--SSEEEEEEC
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCc----EeecCCcceEEEeecc--ccceEEEee
Confidence 4455667888889999999999999987554 67764 3555 22454443 233344 456777765
Q ss_pred e
Q 041108 78 K 78 (102)
Q Consensus 78 ~ 78 (102)
+
T Consensus 92 k 92 (120)
T 2dhz_A 92 R 92 (120)
T ss_dssp T
T ss_pred h
Confidence 5
No 199
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=51.55 E-value=29 Score=22.99 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEE
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLIL 43 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L 43 (102)
...+.+.|+..++=.++|++|+..+++.+..-.-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 3578899999999999999999999999877654
No 200
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=50.60 E-value=23 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKR 28 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~ 28 (102)
+|++...+|+.+.+++.+..|+.+.-.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 688888999999999999999988543
No 201
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=49.74 E-value=28 Score=21.97 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=40.0
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCccEEEEe-CCCCCCCCccCCCCCcccc---CCCCCCCEEEEEeec
Q 041108 15 IQVENDATVADLKREIGAQQKLPCDRLILLL-SSDHSCPMTQDHDEVPLAD---CGVKDGSHIYLFFKP 79 (102)
Q Consensus 15 i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~-~g~~~~~~~~L~d~~~L~~---~gI~~~~~i~l~~~~ 79 (102)
+-|..+.||+++...|....++++++--.+| ++. ....+.++++ +--.++..+++....
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~------~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDT------LPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTB------CCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCc------cCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 4588899999999999999999887654444 544 4455556554 111245677777654
No 202
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=49.04 E-value=44 Score=20.54 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=32.3
Q ss_pred CEEEEEeCC-------CcEEEEEecCC-----------CcHHHHHHHHHhhcC-CCCccEEEEeCCC
Q 041108 1 MKVAVEILT-------GTLFYIQVEND-----------ATVADLKREIGAQQK-LPCDRLILLLSSD 48 (102)
Q Consensus 1 M~v~V~~~~-------g~~~~i~v~~~-----------~TV~dLK~~I~~~~g-ip~~~q~L~~~g~ 48 (102)
|.++||.-- ...+.+.++.+ .|..+|+.++...+. +......|.|...
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~De 70 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAE 70 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECT
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 666776542 24466776532 489999999999963 5555677777664
No 203
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=47.89 E-value=30 Score=21.65 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=40.9
Q ss_pred EEecCCCcHHHHHHHHHhhcCCCCccE-EEEeCCCCCCCCccCCCCCccccC---CCCCCCEEEEEeecC
Q 041108 15 IQVENDATVADLKREIGAQQKLPCDRL-ILLLSSDHSCPMTQDHDEVPLADC---GVKDGSHIYLFFKPL 80 (102)
Q Consensus 15 i~v~~~~TV~dLK~~I~~~~gip~~~q-~L~~~g~~~~~~~~L~d~~~L~~~---gI~~~~~i~l~~~~~ 80 (102)
+-|..+.|++++...|....+++++.- -|+.++. ....+.+++++ --.++..+++.....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~------~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~ 112 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT------VPQSSLTMGQLYEKEKDEDGFLYVAYSGE 112 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTB------CCCTTSBHHHHHHHHCCTTSCEEEEEECC
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCE------ecCccchHHHHHHHhCCCCCEEEEEEeCC
Confidence 467788999999999999999988765 4444554 44455666552 112466888877653
No 204
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=46.93 E-value=45 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=36.0
Q ss_pred EEEEeCCC-cEEEEEecC--CCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 3 VAVEILTG-TLFYIQVEN--DATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 3 v~V~~~~g-~~~~i~v~~--~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
+.||+.-+ ..+.+.++. ..+-.+|...++....++.....+.|...
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~ 55 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDA 55 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECT
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECC
Confidence 56777644 556777764 58999999999999999887888888664
No 205
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.93 E-value=46 Score=20.14 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHhhcCCCCccEEEEe--CCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 21 ATVADLKREIGAQQKLPCDRLILLL--SSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 21 ~TV~dLK~~I~~~~gip~~~q~L~~--~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
.+..||+.+...+.+++...-+|++ .|. .++|+.-+..+. +.++.+.+.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT------~VddEeyF~tLp---~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGT------VVDTEEFFQTLG---DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCC------BCCCHHHHTTSC---SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCc------EEechhhhhhCC---CCCEEEEEc
Confidence 3799999999999999765666655 466 887776665553 444444443
No 206
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=46.27 E-value=46 Score=19.98 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=49.2
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEee
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFK 78 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~ 78 (102)
..+.|........+-+..++++++|+.---++.+.. --++..++-...-+++|+.+.++-|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dG-----iGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDG-----IGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTS-----CCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCC-----cccChhhccchhhhhcCceeEeccc
Confidence 468898888888888889999999987776666554 1468888888888899999999865
No 207
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=46.20 E-value=23 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~ 29 (102)
.+.+.. +|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELTI-NGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHH
Confidence 445544 799999999999999997655
No 208
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=45.00 E-value=32 Score=22.11 Aligned_cols=60 Identities=12% Similarity=0.322 Sum_probs=41.6
Q ss_pred EEEecCCCcHHHHHHHHHhhcCCCCccEEEE-eCCCCCCCCccCCCCCccccC----CCCCCCEEEEEeec
Q 041108 14 YIQVENDATVADLKREIGAQQKLPCDRLILL-LSSDHSCPMTQDHDEVPLADC----GVKDGSHIYLFFKP 79 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~-~~g~~~~~~~~L~d~~~L~~~----gI~~~~~i~l~~~~ 79 (102)
.+-|..+.||+++...|....+++++.--.+ |.++ .....+.+++++ +- ++..+++....
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~-----~~p~~~~~m~~lY~~~kd-eDGfLyv~Ys~ 120 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH-----SMVSVSTPISEVYESEKD-EDGFLYMVYAS 120 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTT-----EECCTTSBHHHHHHHHCC-TTSCEEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECC-----ccCCccchHHHHHHHhCC-CCCEEEEEEeC
Confidence 3468889999999999999999998766544 6665 133455566552 22 46677777653
No 209
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=44.40 E-value=30 Score=23.00 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=29.9
Q ss_pred cEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 11 TLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 11 ~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
..+.+.|+..++=.++|++|+..+++.+..-.-+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 123 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5688999999999999999999999998776543
No 210
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=43.75 E-value=48 Score=19.48 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=35.7
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
+.+...+++.-.++|.+..|+-|--.++-+.-++.|+.=.++
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 677888898889999999999998888888899988765554
No 211
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=43.42 E-value=52 Score=19.76 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=35.6
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
+.+...+++.-.++|.+..|+-|--.++-+.-++.++.=.++
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 677788899889999999999998888888889988765554
No 212
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=42.85 E-value=29 Score=22.99 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKR 28 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~ 28 (102)
.+.+.. +|+.+.++++++.|+.++-+
T Consensus 5 ~i~~~v-NG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLNL-NGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-TTEEEEEEECSSSBHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCCHHHHHH
Confidence 455554 68999999999999999764
No 213
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=42.61 E-value=19 Score=22.14 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=30.7
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHh---------hcCCCCccEEEE
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGA---------QQKLPCDRLILL 44 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~---------~~gip~~~q~L~ 44 (102)
+.+...+|.+|.++|..+.-+..-|+.|+. .+++..+..+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcvw 88 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRITYLTETKIDKLCVW 88 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheeee
Confidence 467788999999999998777777766654 356666655543
No 214
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=42.49 E-value=29 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~ 29 (102)
.+.+.. +|+.+.++++++.|+.++-..
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVNV-NGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 344444 799999999999999997655
No 215
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=41.40 E-value=35 Score=20.45 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
+.+..++......+++.|++..+++++
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~ 44 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDAD 44 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChh
Confidence 456777778899999999999998764
No 216
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=41.32 E-value=36 Score=22.38 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=21.6
Q ss_pred CEEEEEeCCCcEEEEEecCCCcHHHHHHH
Q 041108 1 MKVAVEILTGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~~~TV~dLK~~ 29 (102)
|.+.+.. +|+.+.+++++..|+.+.-..
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 3455554 688899999999999987654
No 217
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=40.23 E-value=26 Score=25.81 Aligned_cols=60 Identities=15% Similarity=0.017 Sum_probs=39.4
Q ss_pred EEeCCCc----EEEEEecCCCcHHHHHHHHHhhcCCC-CccEEEEeCCCCCCCCccCCCCCcccc
Q 041108 5 VEILTGT----LFYIQVENDATVADLKREIGAQQKLP-CDRLILLLSSDHSCPMTQDHDEVPLAD 64 (102)
Q Consensus 5 V~~~~g~----~~~i~v~~~~TV~dLK~~I~~~~gip-~~~q~L~~~g~~~~~~~~L~d~~~L~~ 64 (102)
|...+|+ ...+.+++..|+.||-..|....|+. .+-.-|.+...++.-..-|+++..+.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4455676 88999999999999999999999984 333455542210000113566666654
No 218
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=39.89 E-value=54 Score=24.55 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=38.0
Q ss_pred CCCcEEEEEecCCCcHHHHHHHHH--hhcCC---CCccEEEEeCCCCCCCCccCCCCCcccc
Q 041108 8 LTGTLFYIQVENDATVADLKREIG--AQQKL---PCDRLILLLSSDHSCPMTQDHDEVPLAD 64 (102)
Q Consensus 8 ~~g~~~~i~v~~~~TV~dLK~~I~--~~~gi---p~~~q~L~~~g~~~~~~~~L~d~~~L~~ 64 (102)
++|+...+.+++..||.|+-..|. .+.|+ .++..-|.+...++....-|+++.++.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 678888999999999999999998 56664 3445555442211111125677777765
No 219
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=39.40 E-value=11 Score=26.10 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCcHHHHHHHHHhhcCCCCccEE
Q 041108 10 GTLFYIQVENDATVADLKREIGAQQKLPCDRLI 42 (102)
Q Consensus 10 g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~ 42 (102)
+..+.+.|+..++=.++|++|++.+++.+..-.
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVN 163 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKVN 163 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEEE
Confidence 357889999999999999999999999887653
No 220
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=39.08 E-value=65 Score=19.61 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEeC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 3 VAVEIL-TGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 3 v~V~~~-~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
++|+.. .|+.+.|++.......||..++..++|-+.+ |.|.+.
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~ld---l~y~nn 48 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMNN 48 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSEE---EEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEecc
Confidence 455554 5888999999999999999999999997655 545443
No 221
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=38.98 E-value=55 Score=26.45 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=42.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcC--CCCcc--------EEEEeCCCCCCCC--ccCCCCCccccCCCCCCCEEEEE
Q 041108 12 LFYIQVENDATVADLKREIGAQQK--LPCDR--------LILLLSSDHSCPM--TQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~~g--ip~~~--------q~L~~~g~~~~~~--~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
...+.++.+.|+.+|-+.+..+.. +.... .+++|...+..+- ..-.-+++|.++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 356788888999999988888633 33221 3566654310000 00133578999999999999886
No 222
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.52 E-value=71 Score=19.64 Aligned_cols=48 Identities=6% Similarity=0.053 Sum_probs=33.4
Q ss_pred CcHHHHHHHHHhhcCCCCcc--EEEE--eCCCCCCCCccCCCCCccccCCCCCCCEEEEE
Q 041108 21 ATVADLKREIGAQQKLPCDR--LILL--LSSDHSCPMTQDHDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 21 ~TV~dLK~~I~~~~gip~~~--q~L~--~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~ 76 (102)
.+..||+.+...+.+++.+. -+|+ -.|. .++|+.-+..+. +++.+.+.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT------~VddEeYF~tLp--~nT~lmvL 88 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGT------IVDDDDYFLCLP--SNTKFVAL 88 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCC------BCCSSSSSSSSC--SCCEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCc------EEechhHhhcCC--CCCEEEEE
Confidence 47999999999999997642 4454 3576 888877666553 55555554
No 223
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.05 E-value=79 Score=19.74 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=31.3
Q ss_pred EEEEeC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEIL-TGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~-~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
++|+.. .|+.+.|++.......||..++..++|-+.+
T Consensus 32 vRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld 69 (111)
T 2c60_A 32 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD 69 (111)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 455554 5888999999999999999999999997765
No 224
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=35.68 E-value=50 Score=19.64 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=20.2
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLK 27 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK 27 (102)
+|++...+|+.+.+++.+..|+.+.-
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 46666668888899999999987743
No 225
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=35.06 E-value=84 Score=20.86 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=30.0
Q ss_pred EEEEEeCCC---cEEEEEecCCCcHHHHHHHHHhhcCCCCcc
Q 041108 2 KVAVEILTG---TLFYIQVENDATVADLKREIGAQQKLPCDR 40 (102)
Q Consensus 2 ~v~V~~~~g---~~~~i~v~~~~TV~dLK~~I~~~~gip~~~ 40 (102)
++.|...+- --+.|.|..+.|..+|=..|....|..-+-
T Consensus 10 ~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 10 HLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 355555532 236899999999999999999999987543
No 226
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=34.33 E-value=32 Score=20.04 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhcCCC
Q 041108 12 LFYIQVENDATVADLKREIGAQQKLP 37 (102)
Q Consensus 12 ~~~i~v~~~~TV~dLK~~I~~~~gip 37 (102)
.+.|-|+++.+..+|..+|.++.+..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 56788999999999999999999865
No 227
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=34.06 E-value=76 Score=18.96 Aligned_cols=68 Identities=7% Similarity=0.173 Sum_probs=44.3
Q ss_pred EEEEEeCC-CcE-----EEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccC-CCCCcccc----CCCCCC
Q 041108 2 KVAVEILT-GTL-----FYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQD-HDEVPLAD----CGVKDG 70 (102)
Q Consensus 2 ~v~V~~~~-g~~-----~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L-~d~~~L~~----~gI~~~ 70 (102)
+|.||... |.. ....|+.+.|++++...|.++.++ +..-|+.++. .. ..+.++++ ++ ++
T Consensus 8 Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~------f~Ps~d~~~~~Ly~~fk--~d 77 (91)
T 3w1s_C 8 KIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNS------FAPSPQQNIGELWMQFK--TN 77 (91)
T ss_dssp EEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTT------BCCCTTSBHHHHHHHHC--BT
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCc------cCCCcccHHHHHHHHhC--CC
Confidence 45666432 332 346789999999999999999988 4556666765 33 33445443 43 57
Q ss_pred CEEEEEeec
Q 041108 71 SHIYLFFKP 79 (102)
Q Consensus 71 ~~i~l~~~~ 79 (102)
+.+++....
T Consensus 78 g~Lyv~Ys~ 86 (91)
T 3w1s_C 78 DELIVSYCA 86 (91)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 788887654
No 228
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=33.45 E-value=85 Score=19.31 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.0
Q ss_pred EEEEeC-CCcEEEEEecCCCcHHHHHHHHHhhcCCCCc
Q 041108 3 VAVEIL-TGTLFYIQVENDATVADLKREIGAQQKLPCD 39 (102)
Q Consensus 3 v~V~~~-~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~ 39 (102)
|+|+.. .|+.+.|++.......||..++..++|-..+
T Consensus 21 vRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~ld 58 (100)
T 2npt_B 21 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD 58 (100)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSCEE
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 455554 5888999999999999999999999997655
No 229
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=33.19 E-value=61 Score=19.34 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=41.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccE-EEEeCCCCCCCCccC-CCCCcccc----CCCCCCCEEEEEeec
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRL-ILLLSSDHSCPMTQD-HDEVPLAD----CGVKDGSHIYLFFKP 79 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q-~L~~~g~~~~~~~~L-~d~~~L~~----~gI~~~~~i~l~~~~ 79 (102)
..+-|+.+.|++++...|..+.++++++- -++.++. .. ..+.++++ ++ ++..+++....
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~------~~P~~d~~~~~Ly~~~k--~DGfLyv~Ys~ 86 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQS------FAPSPDQEVGTLYECFG--SDGKLVLHYCK 86 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTT------BCCCTTCBHHHHHHHHC--BTTEEEEEEES
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCc------cCCChhhHHHHHHHHhC--CCCEEEEEEeC
Confidence 35778899999999999999999987765 4555654 33 33455443 44 57788887654
No 230
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=32.95 E-value=25 Score=22.07 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=31.0
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHh---------hcCCCCccEEEEeC
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGA---------QQKLPCDRLILLLS 46 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~---------~~gip~~~q~L~~~ 46 (102)
+.+...+|.+|.++|..+.-+..-|+.|+. .+++..+..+..-+
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~klcvwnn 90 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERMKDTLRITYLTETKIDKLCVWNN 90 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHHHHHHHHHHHTTCEEEEEEEETT
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchhheeeecC
Confidence 567788999999999998766666665554 36666766655433
No 231
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=32.63 E-value=60 Score=19.35 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.2
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLK 27 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK 27 (102)
+|++...+|+.+.+++....|+.+.-
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 45555568998899999999998743
No 232
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=31.88 E-value=79 Score=18.49 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKR 28 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~ 28 (102)
+|++...+|+...+++.+..|+.+.-.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 456665678888999999999988543
No 233
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=30.46 E-value=47 Score=19.56 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCccccCCCCCCCEEEEEeecC
Q 041108 27 KREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 27 K~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~~gI~~~~~i~l~~~~~ 80 (102)
|+.+-+++++..++.-. .+..+-....+|.+.|+++.+.-+..
T Consensus 20 k~~lL~~y~i~~~qLPr-----------I~~~DPvar~~G~k~GdVvkI~R~S~ 62 (78)
T 1hmj_A 20 VEEILKRYNIKIQQLPK-----------IYEDDPVIQEIGAKEGDVVRVIRKSP 62 (78)
T ss_pred HHHHHHHcCCCHHHCCe-----------eeCcCHhhHHhCCCCCCEEEEEECCC
Confidence 44555566666554322 33444446678999999999976543
No 234
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.44 E-value=95 Score=18.95 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=36.2
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
.+.+-..+++.-.++|.+..|+-|--.++-+.-++.++.=.++
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 4677788888889999999999999988888999988765554
No 235
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=30.14 E-value=84 Score=18.47 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.9
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLK 27 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK 27 (102)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987743
No 236
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=29.33 E-value=79 Score=18.59 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLK 27 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK 27 (102)
+|++...+|....+++.+..|+.+.-
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56776678888899999999998754
No 237
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=28.06 E-value=83 Score=18.19 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~ 29 (102)
+|++...+|....+++.+..|+.+.-..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 3556655677788999999999886543
No 238
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=27.69 E-value=93 Score=19.41 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLK 27 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK 27 (102)
+|++...+|+...+++.+..|+.+.-
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56777678988899999999998743
No 239
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=27.62 E-value=1e+02 Score=18.35 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=42.7
Q ss_pred CEEEEEeCCCcEEEEEecC-CCcHHHHHHHHHhhc----CC-CCccEEE---Ee-CCCCCCCCccCCCCCccccCCCCCC
Q 041108 1 MKVAVEILTGTLFYIQVEN-DATVADLKREIGAQQ----KL-PCDRLIL---LL-SSDHSCPMTQDHDEVPLADCGVKDG 70 (102)
Q Consensus 1 M~v~V~~~~g~~~~i~v~~-~~TV~dLK~~I~~~~----gi-p~~~q~L---~~-~g~~~~~~~~L~d~~~L~~~gI~~~ 70 (102)
|+++|+.. +..+.+.+.+ ..||.+|-++-..++ +- +..+..+ -+ +|. +|+.+..|.+. +.+.
T Consensus 3 MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~gg------iLD~DD~l~dV-ldD~ 74 (85)
T 2ns5_A 3 FKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGG------ILDLDDILCDV-ADDK 74 (85)
T ss_dssp EEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSC------EECTTSCHHHH-SCTT
T ss_pred cEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCc------EeCcccchhhh-ccCc
Confidence 89999995 4556788754 569999876544432 23 2222332 23 455 88988888876 3466
Q ss_pred CEEEEEe
Q 041108 71 SHIYLFF 77 (102)
Q Consensus 71 ~~i~l~~ 77 (102)
+.|.-..
T Consensus 75 e~i~A~~ 81 (85)
T 2ns5_A 75 DRLVAVF 81 (85)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 6655443
No 240
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=27.16 E-value=94 Score=18.03 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=18.6
Q ss_pred CEEEEEeC-CCcEEEEEecCCCcHHHHHH
Q 041108 1 MKVAVEIL-TGTLFYIQVENDATVADLKR 28 (102)
Q Consensus 1 M~v~V~~~-~g~~~~i~v~~~~TV~dLK~ 28 (102)
|...|+.. +|....+++.+..|+.+.-.
T Consensus 1 m~~~v~~~~~~~~~~~~~~~g~tlL~a~~ 29 (98)
T 1iue_A 1 AFYNITLRTNDGEKKIECNEDEYILDASE 29 (98)
T ss_dssp CEEEEEEEETTEEEEEEEETTSCHHHHHH
T ss_pred CcEEEEEEeCCCeEEEEeCCCCcHHHHHH
Confidence 54444443 34367889999999987554
No 241
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=26.86 E-value=62 Score=22.20 Aligned_cols=47 Identities=4% Similarity=0.002 Sum_probs=37.1
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
++.|.+.+|..+.++=-.+.-...|++.+...+++..+.-.+...|.
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGw 132 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGW 132 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeecccc
Confidence 57888888888887755566799999999999999887666665554
No 242
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=26.79 E-value=53 Score=21.53 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=44.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCc-----cEEEEeCCCCCC-C-----------CccCCCCCccccCCCCCCCEEEE
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCD-----RLILLLSSDHSC-P-----------MTQDHDEVPLADCGVKDGSHIYL 75 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~-----~q~L~~~g~~~~-~-----------~~~L~d~~~L~~~gI~~~~~i~l 75 (102)
..|-...++|+.||=..|.+...-.+. ..+++|.....+ . .+--+|+++|.+++..-||-|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 566677789999999888876321000 133444331000 0 01237889999999999999999
Q ss_pred EeecCC
Q 041108 76 FFKPLD 81 (102)
Q Consensus 76 ~~~~~~ 81 (102)
.+-++.
T Consensus 136 aI~pP~ 141 (143)
T 4a6q_A 136 AITPPN 141 (143)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 886543
No 243
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=24.82 E-value=79 Score=18.94 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 23 VADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 23 V~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
...|-+.+++..|+|+++..+.|..-
T Consensus 76 s~~i~~~l~~~Lgi~~~riyI~f~d~ 101 (114)
T 3djh_A 76 SKLLCGLLAERLRISPDRVYINYYDM 101 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 45666778888999999999877543
No 244
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=24.05 E-value=81 Score=18.98 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=39.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCCCCCCCccCCCCCcccc----CCCCCCCEEEEEeec
Q 041108 13 FYIQVENDATVADLKREIGAQQKLPCDRLILLLSSDHSCPMTQDHDEVPLAD----CGVKDGSHIYLFFKP 79 (102)
Q Consensus 13 ~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~~~~~~~~L~d~~~L~~----~gI~~~~~i~l~~~~ 79 (102)
..+-|+.+.|++++...|..+.+++ ..-|+.++. -.-..+.++++ ++ ++..+++....
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~-----~~Ps~d~~m~~LY~~~k--dDGfLyi~Ys~ 91 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSA-----FSPNPDESVIDLYNNFG--FDGKLVVNYAC 91 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEE-----ECCCTTSBHHHHHHHHC--BTTBEEEEEES
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCc-----ccCChhhHHHHHHHHhC--CCCEEEEEEeC
Confidence 3567888999999999999999888 555555552 02244555544 33 36677777654
No 245
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.93 E-value=69 Score=16.30 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCCCCc
Q 041108 24 ADLKREIGAQQKLPCD 39 (102)
Q Consensus 24 ~dLK~~I~~~~gip~~ 39 (102)
.+|-+.+++++|++..
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 5566788889999753
No 246
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=23.74 E-value=1.1e+02 Score=17.41 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKR 28 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~ 28 (102)
+|++...+| ...+++.+..|+.+.-.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 466665667 67889999999988543
No 247
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=23.73 E-value=1.1e+02 Score=17.61 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=18.9
Q ss_pred CEEEEEeC-CCcEEEEEecCCCcHHHHHHH
Q 041108 1 MKVAVEIL-TGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 1 M~v~V~~~-~g~~~~i~v~~~~TV~dLK~~ 29 (102)
|...|+.. .+....+++.+..|+.+.-..
T Consensus 1 m~~~v~~~~~~~~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 1 AAYKVTLVTPTGNVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp CEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CeEEEEEEeCCceEEEEeCCCCcHHHHHHH
Confidence 54445543 233678899999999875543
No 248
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=23.35 E-value=1.1e+02 Score=17.50 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEeCCCcEEEEEecCCCcHHHHHHH
Q 041108 2 KVAVEILTGTLFYIQVENDATVADLKRE 29 (102)
Q Consensus 2 ~v~V~~~~g~~~~i~v~~~~TV~dLK~~ 29 (102)
+|++...+| ...+++.+..|+.+.-..
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 567766666 678899999999885543
No 249
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.17 E-value=87 Score=18.99 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeCC
Q 041108 23 VADLKREIGAQQKLPCDRLILLLSS 47 (102)
Q Consensus 23 V~dLK~~I~~~~gip~~~q~L~~~g 47 (102)
.+.|-+.+++..|+|+++..+.|..
T Consensus 77 s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 77 SAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 3556677888899999999987754
No 250
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=22.28 E-value=1.4e+02 Score=18.18 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=35.8
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeC
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLS 46 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~ 46 (102)
|.+-..+++.-.++|.+..|+-|--.+.-+.-++.++.=.++..
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 67778888888999999999999888888888998875555433
No 251
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=21.71 E-value=99 Score=18.40 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeCC
Q 041108 23 VADLKREIGAQQKLPCDRLILLLSS 47 (102)
Q Consensus 23 V~dLK~~I~~~~gip~~~q~L~~~g 47 (102)
...|-+.+++..|+|+++..+.|..
T Consensus 77 ~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 77 AAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEe
Confidence 4556667777899999999887754
No 252
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.64 E-value=1e+02 Score=19.43 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=28.9
Q ss_pred eCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 7 ILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
...|+.+.++ ...+.++...++...|+.+....+.+.|-
T Consensus 94 ~~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~G~ 132 (150)
T 2w57_A 94 LDCGEVIEFS---DDVIEQRQKEIAAKYNVQLTNHSLYLYGK 132 (150)
T ss_dssp TTTCCEEEEC---CHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCCEEEec---ccCHHHHHHHHHHhcCCEEEEEEEEEEEE
Confidence 3456666554 23578888899999999999999876663
No 253
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=21.53 E-value=1.6e+02 Score=18.37 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred EEEEeCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEE
Q 041108 3 VAVEILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILL 44 (102)
Q Consensus 3 v~V~~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~ 44 (102)
|.+...+++.-.++|.+..|+-|--.++-+.-++-++.=.++
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 567777888889999999999998888888889887654444
No 254
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.99 E-value=1.1e+02 Score=19.39 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=28.7
Q ss_pred eCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 7 ILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
...|+...++ ...+.++...+++..|+.+....+.+.|-
T Consensus 103 ~~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~Gi 141 (150)
T 2xig_A 103 LHCGKIIEFA---DPEIENRQNEVVKKYQAKLISHDMKMFVW 141 (150)
T ss_dssp TTTCCEEEEC---CHHHHHHHHHHHHTTTCEEEEEEEEEEEE
T ss_pred CCCCCEEEec---CCCHHHHHHHHHHHcCCEEeeeEEEEEEE
Confidence 3456666554 23578888999999999999998876653
No 255
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.94 E-value=90 Score=19.29 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=28.3
Q ss_pred eCCCcEEEEEecCCCcHHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 7 ILTGTLFYIQVENDATVADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
...|+...++ ...+.++...+++..|+......+.+.|-
T Consensus 95 ~~Cg~v~~~~---~~~~~~~~~~~~~~~gf~i~~~~l~~~G~ 133 (136)
T 1mzb_A 95 VDTGEVIEFM---DAEIEKRQKEIVRERGFELVDHNLVLYVR 133 (136)
T ss_dssp TTTCCEEEEC---CHHHHHHHHHHHHTTTCCCCCCCCEEEEC
T ss_pred CCCCCEEEec---cccHHHHHHHHhhcCCCEEEeEEEEEEEE
Confidence 3456666654 23578888899999999998888766553
No 256
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=20.74 E-value=44 Score=25.46 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=28.6
Q ss_pred EEEecCCCcHHHHHHHHHhhcC--CCCcc--------EEEEeCCCCCCCCccC--CCCCccccCCCCCCCEEEEE
Q 041108 14 YIQVENDATVADLKREIGAQQK--LPCDR--------LILLLSSDHSCPMTQD--HDEVPLADCGVKDGSHIYLF 76 (102)
Q Consensus 14 ~i~v~~~~TV~dLK~~I~~~~g--ip~~~--------q~L~~~g~~~~~~~~L--~d~~~L~~~gI~~~~~i~l~ 76 (102)
.+.++++.|+.++-+.+..+.. +.... .+++|...+..+-+.. .-+++|.++|+.+|+.+.+.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4556666777788777877533 32211 2555654321110011 23578999999999988774
No 257
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=20.58 E-value=1e+02 Score=19.19 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeCCC
Q 041108 23 VADLKREIGAQQKLPCDRLILLLSSD 48 (102)
Q Consensus 23 V~dLK~~I~~~~gip~~~q~L~~~g~ 48 (102)
.+.|-+.+++..|+|+++..+.|..-
T Consensus 98 s~~i~~~l~~~LgI~~~rvyI~f~d~ 123 (133)
T 3fwt_A 98 TPRIAAAITKECGIPAERIYVFYYST 123 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEEh
Confidence 45666778888999999999877554
No 258
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.46 E-value=96 Score=19.38 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeCC
Q 041108 23 VADLKREIGAQQKLPCDRLILLLSS 47 (102)
Q Consensus 23 V~dLK~~I~~~~gip~~~q~L~~~g 47 (102)
.+.|-+.+++..|+|+++..+.|..
T Consensus 98 s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 98 TSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEE
Confidence 4566677888899999999987754
No 259
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.23 E-value=1e+02 Score=17.37 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=12.8
Q ss_pred ccccCCCCCCCEEEEEeecC
Q 041108 61 PLADCGVKDGSHIYLFFKPL 80 (102)
Q Consensus 61 ~L~~~gI~~~~~i~l~~~~~ 80 (102)
-|.+.|+.+|+.|.+.-+.+
T Consensus 27 rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 27 RIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHTCCTTCEEEEEEECT
T ss_pred HHHHCCCCCCCEEEEEEeCC
Confidence 45667777777777665543
Done!