Query 041109
Match_columns 467
No_of_seqs 150 out of 300
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 4E-131 1E-135 1019.0 38.0 398 47-446 1-402 (403)
2 2npp_B PP2A, B subunit, serine 100.0 3E-130 1E-134 1026.1 29.9 408 41-450 28-439 (449)
3 2jak_A Serine/threonine-protei 100.0 1E-115 4E-120 900.3 34.3 349 41-391 40-392 (392)
4 1ibr_B P95, importin beta-1 su 96.0 0.16 5.5E-06 50.7 15.8 155 250-413 83-249 (462)
5 2bpt_A Importin beta-1 subunit 95.2 1.4 4.7E-05 47.9 20.7 230 173-410 411-668 (861)
6 1qgr_A Protein (importin beta 95.1 3.9 0.00013 44.4 24.2 231 174-410 218-479 (876)
7 4fdd_A Transportin-1; heat rep 95.0 0.99 3.4E-05 49.8 19.3 227 175-417 15-251 (852)
8 2bpt_A Importin beta-1 subunit 95.0 5 0.00017 43.4 24.7 232 174-410 225-482 (861)
9 1qgr_A Protein (importin beta 94.7 3.3 0.00011 44.9 22.3 94 314-409 583-678 (876)
10 2qk1_A Protein STU2; STU2P, XM 94.2 1.3 4.6E-05 42.0 15.6 177 179-361 22-215 (249)
11 4fdd_A Transportin-1; heat rep 93.7 10 0.00034 41.7 23.7 242 167-416 478-748 (852)
12 2qk2_A LP04448P; mini spindles 93.6 1.8 6.1E-05 40.0 15.1 179 178-361 20-200 (242)
13 2jdq_A Importin alpha-1 subuni 93.3 6.8 0.00023 38.7 21.3 233 165-410 99-347 (450)
14 1u6g_C TIP120 protein, CAND1; 92.3 10 0.00035 43.5 21.7 249 76-361 19-279 (1230)
15 1xqr_A HSPBP1 protein; armadil 90.2 8.6 0.0003 37.5 16.0 99 146-246 56-156 (296)
16 4b8j_A Importin subunit alpha- 89.2 20 0.00069 36.6 18.7 231 167-411 154-401 (528)
17 1wa5_B Importin alpha subunit; 88.3 13 0.00044 38.2 16.5 227 169-410 169-412 (530)
18 4hxt_A De novo protein OR329; 86.2 12 0.00039 33.6 13.1 190 163-363 34-238 (252)
19 1u6g_C TIP120 protein, CAND1; 83.3 19 0.00064 41.3 16.0 181 174-361 7-199 (1230)
20 2vgl_B AP-2 complex subunit be 83.0 14 0.00048 39.1 13.8 175 173-362 353-528 (591)
21 1wa5_B Importin alpha subunit; 81.7 49 0.0017 33.8 19.0 224 175-415 89-333 (530)
22 3u0r_A Apoptosis inhibitor 5; 80.7 61 0.0021 34.2 17.1 57 292-348 261-323 (507)
23 1ibr_B P95, importin beta-1 su 80.5 45 0.0015 32.6 15.8 209 175-387 219-458 (462)
24 4db6_A Armadillo repeat protei 79.8 30 0.001 30.2 15.5 179 172-362 11-205 (210)
25 2qk1_A Protein STU2; STU2P, XM 79.1 17 0.00059 34.1 11.6 100 318-423 127-234 (249)
26 4db8_A Armadillo-repeat protei 76.8 26 0.00089 31.6 11.8 218 176-408 15-249 (252)
27 2km4_A Regulator of TY1 transp 76.8 8.2 0.00028 33.6 7.9 83 283-365 26-117 (142)
28 4db8_A Armadillo-repeat protei 74.6 30 0.001 31.1 11.7 183 168-362 49-247 (252)
29 2of3_A ZYG-9; multifunctional 72.5 46 0.0016 32.2 12.7 108 312-423 63-176 (266)
30 4fu3_A Regulation of nuclear P 71.4 5.5 0.00019 34.0 5.4 82 282-363 26-113 (135)
31 3tpo_A Importin subunit alpha- 70.1 1E+02 0.0035 31.6 20.7 197 160-362 149-360 (529)
32 2x19_B Importin-13; nuclear tr 70.1 1.3E+02 0.0046 33.0 21.8 149 177-363 690-843 (963)
33 3ibv_A Exportin-T; karyopherin 68.0 33 0.0011 39.0 12.2 210 175-410 8-260 (980)
34 3m1i_C Exportin-1; heat repeat 67.7 58 0.002 36.8 14.2 220 170-411 13-264 (1049)
35 2x1g_F Cadmus; transport prote 66.5 1.5E+02 0.0051 32.8 17.1 214 143-361 540-809 (971)
36 3ul1_B Importin subunit alpha- 65.9 1.2E+02 0.0042 31.0 18.6 220 158-385 128-367 (510)
37 1w63_A Adapter-related protein 64.2 1.4E+02 0.0049 31.4 15.8 81 276-362 479-573 (618)
38 2jdq_A Importin alpha-1 subuni 63.1 1.1E+02 0.0039 29.6 23.7 224 173-414 64-309 (450)
39 4hxt_A De novo protein OR329; 62.5 82 0.0028 27.8 22.1 224 175-413 4-244 (252)
40 1b3u_A Protein (protein phosph 62.2 1.4E+02 0.0046 30.2 16.9 28 175-202 12-39 (588)
41 1w63_A Adapter-related protein 60.8 1.7E+02 0.0058 30.9 17.9 144 260-417 425-583 (618)
42 3gjx_A Exportin-1; transport, 60.2 1.4E+02 0.0048 34.4 15.5 107 169-288 24-142 (1073)
43 2vgl_A Adaptor protein complex 59.6 1.6E+02 0.0056 31.2 15.3 206 177-409 372-588 (621)
44 2vgl_B AP-2 complex subunit be 55.5 2E+02 0.0068 30.0 16.7 66 175-244 123-189 (591)
45 2qk2_A LP04448P; mini spindles 55.1 43 0.0015 30.4 8.6 97 312-412 32-129 (242)
46 3m1i_C Exportin-1; heat repeat 53.3 2.2E+02 0.0076 31.9 15.7 89 272-361 725-828 (1049)
47 1sz9_A PCF11 protein; RNA poly 52.9 27 0.00093 30.5 6.4 89 276-364 24-115 (144)
48 2x1g_F Cadmus; transport prote 50.1 2.9E+02 0.01 30.4 17.4 96 311-408 653-762 (971)
49 2vgl_A Adaptor protein complex 48.5 2.3E+02 0.0079 30.0 14.2 169 176-362 407-585 (621)
50 1b3u_A Protein (protein phosph 48.0 2.3E+02 0.0078 28.5 19.0 225 173-414 324-553 (588)
51 4flb_A Regulation of nuclear P 47.0 31 0.001 29.2 5.7 82 282-363 27-112 (132)
52 4hat_C Exportin-1; heat repeat 42.4 2.9E+02 0.01 31.4 14.5 224 169-411 12-264 (1023)
53 1wa5_C Importin alpha RE-expor 41.9 3.9E+02 0.013 29.5 19.2 74 172-245 547-629 (960)
54 3gs3_A Symplekin, LD45768P; he 41.5 1E+02 0.0036 29.4 9.1 82 277-363 35-116 (257)
55 1wa5_C Importin alpha RE-expor 41.3 4E+02 0.014 29.4 20.3 72 249-325 77-153 (960)
56 4b8j_A Importin subunit alpha- 39.0 3.1E+02 0.011 27.5 23.1 229 169-414 113-362 (528)
57 3tpo_A Importin subunit alpha- 34.3 3.9E+02 0.013 27.2 20.7 227 175-414 78-326 (529)
58 1lsh_A Lipovitellin (LV-1N, LV 33.8 5.8E+02 0.02 29.0 16.5 260 149-449 289-576 (1056)
59 3a6p_A Exportin-5; exportin-5, 33.4 2.9E+02 0.0098 31.9 12.7 113 175-299 13-142 (1204)
60 2iw3_A Elongation factor 3A; a 32.9 6E+02 0.021 29.0 17.8 176 233-411 70-325 (986)
61 3b2a_A TON_1937, putative unch 32.8 3.4E+02 0.012 26.1 14.3 179 171-362 31-214 (265)
62 2db0_A 253AA long hypothetical 31.8 3.3E+02 0.011 25.6 19.7 132 276-421 88-220 (253)
63 3ibv_A Exportin-T; karyopherin 31.5 6E+02 0.021 28.6 22.1 109 335-450 330-466 (980)
64 1oks_A RNA polymerase alpha su 29.8 81 0.0028 23.1 4.6 46 237-284 5-50 (56)
65 1x5b_A Signal transducing adap 24.8 3E+02 0.01 24.1 8.6 78 284-361 41-120 (163)
66 1eyh_A Epsin; superhelix of he 24.2 3.5E+02 0.012 23.4 10.1 101 297-410 10-122 (144)
67 1vdy_A Hypothetical protein (R 24.2 66 0.0023 28.1 4.0 94 315-412 31-132 (140)
68 3ul1_B Importin subunit alpha- 22.7 6E+02 0.021 25.6 22.2 228 175-415 59-308 (510)
69 3d9j_A RNA-binding protein 16; 21.9 1.5E+02 0.005 25.6 5.8 81 282-363 29-119 (145)
70 3onk_A Epsin-3, ENT3; helix, p 21.9 3.7E+02 0.013 23.5 8.5 86 319-410 32-129 (150)
71 1xqr_A HSPBP1 protein; armadil 21.3 5.3E+02 0.018 24.5 15.8 76 338-420 168-248 (296)
72 1xl3_C Protein type A, secreti 20.3 85 0.0029 25.6 3.6 44 290-333 19-62 (92)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=3.6e-131 Score=1019.02 Aligned_cols=398 Identities=39% Similarity=0.753 Sum_probs=391.0
Q ss_pred ChhHHHHHHH-HHhccCccccc-cCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCC
Q 041109 47 YDSEKEEILS-AISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPIST 124 (467)
Q Consensus 47 ~~~~~~~l~~-Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~lPp~~~~ 124 (467)
|++||++||. ||++||++||| +||.+|+++|++||++|+||++|++++++.+||++|+++++||++|||||+||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 5788998886 99999999999 899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhh
Q 041109 125 PITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYA 202 (467)
Q Consensus 125 ~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~ 202 (467)
++..||||||||+ +|++|||||+||++|+||++| .|++.+|+|||++||.+|+++|+||||||||+|||+||||||
T Consensus 81 ~~~~~d~eedep~--~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TGAEFDPEEDEPT--LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CSTTCCGGGCCCC--CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccccc--cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 8778999999999 999999999999999999999 569999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHH
Q 041109 203 KFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCV 282 (467)
Q Consensus 203 kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv 282 (467)
||+++|+|||++|+|+|++|+||+++|+||+|||||+||||||||+|||+||+.||.+||+|||++++++.||+||+||+
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109 283 SQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 283 ~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~ 362 (467)
+||++|||+|+..+++||+||||+|||+|||+||+|+++|++.++|++|.+++.|+|++||+|++|+|||||||||++|+
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109 363 NEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMKRKEKWR 442 (467)
Q Consensus 363 N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~ 442 (467)
|+++++++++|++.|+|+++|+|++++++|||++|+++|.+|+++|||||+++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 041109 443 RIET 446 (467)
Q Consensus 443 ~i~~ 446 (467)
+|++
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9864
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=2.8e-130 Score=1026.14 Aligned_cols=408 Identities=38% Similarity=0.740 Sum_probs=378.7
Q ss_pred CCCCCCChhHHHHHHH-HHhccCccccc-cCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 041109 41 NGLQSPYDSEKEEILS-AISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPL 118 (467)
Q Consensus 41 ~~~~~~~~~~~~~l~~-Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~l 118 (467)
|.++|+|+++++.||. ||++||++||| +||.+|+++||+||++|+||++|++++++.+||++|+++++||++|||||+
T Consensus 28 p~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~l 107 (449)
T 2npp_B 28 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL 107 (449)
T ss_dssp ----------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCCCC
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3668999999999987 99999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHH
Q 041109 119 PPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNI 196 (467)
Q Consensus 119 Pp~~~~~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~Lkti 196 (467)
||+.++.+..||||||||+ +|++|||||+||++|+||++| +|++.+++|||++||.+|+++|+||||||||+||++
T Consensus 108 Pp~~~~~~~~~d~eedep~--~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 185 (449)
T 2npp_B 108 PPSSNPTGAEFDPEEDEPT--LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 185 (449)
T ss_dssp CCCSSCCSSSSCGGGCCCC--CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHH
T ss_pred CCCCCcccccCCCcccccc--ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9998887778999999999 999999999999999999999 668999999999999999999999999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHH
Q 041109 197 YHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHR 276 (467)
Q Consensus 197 LhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~ 276 (467)
||||||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.||.+||+|||++++++.||+
T Consensus 186 LhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~ 265 (449)
T 2npp_B 186 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 265 (449)
T ss_dssp HHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHH
Q 041109 277 QLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAER 356 (467)
Q Consensus 277 qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAEr 356 (467)
||+||++||++|||+|+..+++||+||||+|||+|||+||+||++|++.+++++|++++.|+|++||+|++|+|||||||
T Consensus 266 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAEr 345 (449)
T 2npp_B 266 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 345 (449)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109 357 ALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLEATEIRESAARQEEMK 436 (467)
Q Consensus 357 AL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~ 436 (467)
||++|+|++|++++++|++.|+|+++|+|++++++|||++||++|++|+++||+|||++|++|+++|+++++++++++++
T Consensus 346 AL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~~~~~ 425 (449)
T 2npp_B 346 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKE 425 (449)
T ss_dssp HHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 041109 437 RKEKWRRIETLAAA 450 (467)
Q Consensus 437 r~~~W~~i~~~A~~ 450 (467)
|+++|++|+++|++
T Consensus 426 r~~~W~~i~~~A~~ 439 (449)
T 2npp_B 426 REEAWVKIENLAKA 439 (449)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999965
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1.3e-115 Score=900.28 Aligned_cols=349 Identities=40% Similarity=0.769 Sum_probs=319.5
Q ss_pred CCCCCCChhHHHHHHH-HHhccCccccc-cCCCCCchhHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 041109 41 NGLQSPYDSEKEEILS-AISICNTIFTF-TDPSESPEQQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPL 118 (467)
Q Consensus 41 ~~~~~~~~~~~~~l~~-Kl~~C~~ifDF-~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~l 118 (467)
|.++|+|++++++||. ||++||++||| +||.+|+++||+||++|+||++|++++++.+||++++++++||++|||||+
T Consensus 40 p~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~l 119 (392)
T 2jak_A 40 LHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL 119 (392)
T ss_dssp --CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3668999999999987 99999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCcchHHHHHHHHHHHhc--CCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHH
Q 041109 119 PPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILLRLVLH--VDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNI 196 (467)
Q Consensus 119 Pp~~~~~~~~~~~~edep~~~~e~sWpHLqlVY~ill~fi~s--~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~Lkti 196 (467)
||.+++.+..||+|||||+ +|++|||||+||++|+||++| ++++.+++|||++|+.+|+++|+||||||||+||++
T Consensus 120 Pp~~~~~~~~~d~eedep~--~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lkti 197 (392)
T 2jak_A 120 PPSSNPTGAEFDPEEDEPT--LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTT 197 (392)
T ss_dssp CC---------------CC--CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCcccccCCccccccc--cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 9998887778999999999 999999999999999999999 568999999999999999999999999999999999
Q ss_pred HHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHH
Q 041109 197 YHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHR 276 (467)
Q Consensus 197 LhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~ 276 (467)
||||||||+++|+|||++|+|+|++|+||+++||||+|||||+||||||||+|||+||+.|+.+||+|||++++++.||+
T Consensus 198 LhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~ 277 (392)
T 2jak_A 198 LHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHP 277 (392)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHH
Q 041109 277 QLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAER 356 (467)
Q Consensus 277 qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAEr 356 (467)
||+||++||++|||+|++.+++||+||||+|||+|||+||+||++|++.+++++|++++.|+|++||+|++|+|||||||
T Consensus 278 qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAEr 357 (392)
T 2jak_A 278 QLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAER 357 (392)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHhhccccchhhhhHHHHHHhhc
Q 041109 357 ALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKL 391 (467)
Q Consensus 357 AL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~ 391 (467)
||++|+|++|++++++|++.|+|+|+|+|++++++
T Consensus 358 AL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 358 ALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 99999999999999999999999999999999874
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.97 E-value=0.16 Score=50.73 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC------CCcHHHHHHHhhccCCCC--CchhHhHHHHHHHH
Q 041109 250 LKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE------PALGGLVARGILKYWPVT--NCRKEVLLIGELEE 321 (467)
Q Consensus 250 LKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd------p~L~~~vi~~llk~WP~t--ns~KevlFL~el~~ 321 (467)
+.++.+..++..|+++.....-.. .+++.|+..+...+ |.+...++..+- -. +......-+.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 667888888899999887766444 78888888876543 444444444442 12 34445566777778
Q ss_pred HhhcCChHHHHHHHHHHHHHHhHhhCCC--CHHHHHHHHHhhcc--hhHHHHHhhccccchhhhhHHHHHHhhccccHHH
Q 041109 322 LVDSIDPAQYRRLALPLCTKITKCLNSC--NSEVAERALYVWNN--EQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSV 397 (467)
Q Consensus 322 ile~~~~~~f~~i~~~lf~~la~ci~S~--h~qVAErAL~~w~N--~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~V 397 (467)
+.+...++.+......++..+..+++++ +..|-.+|+..+.+ +.+...... ....+.+.+.|.+.. .+=+..+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~-~~~~~~v 233 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEAT-QCPDTRV 233 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHHT-TCSSHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhc-CCCCHHH
Confidence 8776656667777788999999999998 78887777755443 111111110 001233444454433 3346788
Q ss_pred HHHHHHHHHHHHhcCH
Q 041109 398 KQLTENVKVMLEQMDP 413 (467)
Q Consensus 398 r~~a~~vl~~l~e~D~ 413 (467)
|..+..++..+.+..+
T Consensus 234 r~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888876554
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.17 E-value=1.4 Score=47.88 Aligned_cols=230 Identities=10% Similarity=0.061 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC--
Q 041109 173 RFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTF---YRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT-- 247 (467)
Q Consensus 173 ~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~---~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa-- 247 (467)
.++..|+..+.+++++-|......+.++-..+.. ...++...+.. +...+.+. ..--......++.++.++.
T Consensus 411 ~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~-l~~~l~~~--~~v~~~a~~al~~l~~~~~~~ 487 (861)
T 2bpt_A 411 QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA-CLIGLQDH--PKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH-HHHHHTSC--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH-HHHHhccC--hHHHHHHHHHHHHHHHhcccc
Confidence 3566677777788888887776666665443221 12233332222 22222221 1111223445555555543
Q ss_pred --CCchHHHHHHHHHHhhhccCCcch-hhhHHHHHHHHHHHHhcCCCcH--------HHHHHHhhccCCCC----C----
Q 041109 248 --VPLKEEHKLFLIRVLIPLHKSKGM-QAYHRQLAYCVSQFVQKEPALG--------GLVARGILKYWPVT----N---- 308 (467)
Q Consensus 248 --~PLKeeh~~fl~~vLlPLhk~~~~-~~y~~qL~~cv~qf~~kdp~L~--------~~vi~~llk~WP~t----n---- 308 (467)
..+.+ +..-+...|+++.+.... .........++..+++..+.-. ..++..+.+.-|.. +
T Consensus 488 ~~~~l~~-~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 488 TPSPIYN-FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSCGGGG-GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred cchhhHH-HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 11222 222234455665553221 2223345555555555544322 12223333222211 0
Q ss_pred -chh--HhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCH-HHHHHHHHhhcchhHHHHHhhccccchhhhhHH
Q 041109 309 -CRK--EVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNS-EVAERALYVWNNEQFVRMVSSSLEDVFPVIVEG 384 (467)
Q Consensus 309 -s~K--evlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~-qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~ 384 (467)
... ....+.-+..++..+++ .+......++..+...+++.+. .|-+.|+..+. .+...........+|.++|.
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHH
Confidence 011 12456667777777665 5666777888888888888776 67777776653 22223322222334555555
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHh
Q 041109 385 MEKNLKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 385 L~~~~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
|.+..+ +=+..+|..+..++..+.+
T Consensus 644 l~~~l~-~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 644 LLKALN-QVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHH-CTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 554432 2234577777776665543
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.12 E-value=3.9 Score=44.37 Aligned_cols=231 Identities=10% Similarity=0.091 Sum_probs=128.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC-----
Q 041109 174 FLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTF-YRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT----- 247 (467)
Q Consensus 174 Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~-~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa----- 247 (467)
++..+...+.++|++.|.....+|..+...+.. .++++.+.+-..+..... .....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 455667778899999998888888887665432 245555223333333221 1112223345666666554310
Q ss_pred ------------CCchH---HHHHHHHHHhhhccCCc-------chhhhHHHHHHHHHHHHhcCC-CcHHHHHHHhhccC
Q 041109 248 ------------VPLKE---EHKLFLIRVLIPLHKSK-------GMQAYHRQLAYCVSQFVQKEP-ALGGLVARGILKYW 304 (467)
Q Consensus 248 ------------~PLKe---eh~~fl~~vLlPLhk~~-------~~~~y~~qL~~cv~qf~~kdp-~L~~~vi~~llk~W 304 (467)
.+... .+..-+...++.+.... .. .....-..|+....+..+ .....++..+....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l 375 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW-NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC-CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccccccccc-HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc
Confidence 01111 11111222333333211 11 111222333333333222 34455555555544
Q ss_pred CCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhc--cccchhhhh
Q 041109 305 PVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSS--LEDVFPVIV 382 (467)
Q Consensus 305 P~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~--~~~i~Pii~ 382 (467)
--.+....-.-+.-+..+.+.+.++.+......+...+..+++++|..|-.+|+..+.+ +...+... ....++.++
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR--ICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH--HHHHCGGGTSSTTTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhCchhcccHHHHHHHH
Confidence 34455555566677888888888777777788888999999999999999888876643 33333221 234567777
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHh
Q 041109 383 EGMEKNLKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 383 ~~L~~~~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
+.|.+.... +..|+..+..++..+.+
T Consensus 454 ~~l~~~l~~--~~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 454 QCLIEGLSA--EPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHTTS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHHH
Confidence 777776665 37778777777666554
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.02 E-value=0.99 Score=49.75 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=130.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHH-HHHHHHHHhccCCCchHH
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGEL-LEIWGSIINGFTVPLKEE 253 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~EL-Leil~sIIngfa~PLKee 253 (467)
+.+++....|+|+..|......|..++.. .+. . .....++... ......+--+ .-.+...|+..-.++.++
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~-p~~---~-~~l~~il~~~---~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~ 86 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQY-PDF---N-NYLIFVLTKL---KSEDEPTRSLSGLILKNNVKAHFQNFPNG 86 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTS-HHH---H-HHHHHHHHTC---TTSCHHHHHHHHHHHHHHTTTSGGGCCHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHhC-CCH---H-HHHHHHHhcc---CCCChHHHHHHHHHHHHHHHHccCCCCHH
Confidence 44566666789999999999999876541 111 0 0111111110 0000011000 112223333333457788
Q ss_pred HHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC-----CCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCCh
Q 041109 254 HKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE-----PALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDP 328 (467)
Q Consensus 254 h~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd-----p~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~ 328 (467)
.+..++..++++...+. ..-..+++.|+......| |.+...++..+ -..+..-.-.-+.-+..+++..++
T Consensus 87 ~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l----~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLL----DSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH----SCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999887654 355679999999988765 34444444333 223333344455566666665543
Q ss_pred HHH----HHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHH
Q 041109 329 AQY----RRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENV 404 (467)
Q Consensus 329 ~~f----~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~v 404 (467)
..- ......++..+.+++++++..|-..|+....+ ++....+.....++-+++.+.+.... =+..||..+..+
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d-~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGD-EEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTC-CCHHHHHHHHHH
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 311 12245677778889999999998888765542 11111111122344555666554432 367899999999
Q ss_pred HHHHHhcCHHHHH
Q 041109 405 KVMLEQMDPNLYS 417 (467)
Q Consensus 405 l~~l~e~D~~lf~ 417 (467)
+..+.+..|+.+.
T Consensus 239 L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 239 LVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHCHHHHG
T ss_pred HHHHHHhCHHHHH
Confidence 9999888776543
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.99 E-value=5 Score=43.42 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=127.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC-----
Q 041109 174 FLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTF-YRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT----- 247 (467)
Q Consensus 174 Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~-~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa----- 247 (467)
++..|...+.++|++.|......|.++...+.. .++++.+.+-..+...+.. ....-....+++++++.....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455566778899999999988888887665543 3455553344444443332 222334455777777665420
Q ss_pred ------CC-----chHHHHHHHHHHhhhccCCcc------hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHhhccCCCCCc
Q 041109 248 ------VP-----LKEEHKLFLIRVLIPLHKSKG------MQAYHRQLAYCVSQFVQKEP-ALGGLVARGILKYWPVTNC 309 (467)
Q Consensus 248 ------~P-----LKeeh~~fl~~vLlPLhk~~~------~~~y~~qL~~cv~qf~~kdp-~L~~~vi~~llk~WP~tns 309 (467)
.| .-..+...+..+++...+... -......-..|+..+....+ .....++..+...--..+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 00 001111222233333333210 00112223334433333222 2344444444433222333
Q ss_pred hhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhc--cccchhhhhHHHHH
Q 041109 310 RKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSS--LEDVFPVIVEGMEK 387 (467)
Q Consensus 310 ~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~--~~~i~Pii~~~L~~ 387 (467)
...-.-+.-+..+.+.+.++.+......+...+..++.++|..|-++|+..+. .+...+... ....++.++|.|.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~~~~~~~~l~~l~~ 461 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG--RIADSVAESIDPQQHLPGVVQACLI 461 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH--HHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 44444566677888777778888888889999999999999999888875443 223333221 13356666666666
Q ss_pred HhhccccHHHHHHHHHHHHHHHh
Q 041109 388 NLKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 388 ~~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
..... ..||..+..++..+.+
T Consensus 462 ~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 462 GLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHTSC--HHHHHHHHHHHHHHHH
T ss_pred HhccC--hHHHHHHHHHHHHHHH
Confidence 55554 6778777777655443
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.75 E-value=3.3 Score=44.92 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCC--HHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhhc
Q 041109 314 LLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCN--SEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKL 391 (467)
Q Consensus 314 lFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h--~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~ 391 (467)
..+.-+..++..++.+.+......++..+..++++.+ ..|-+.|+..+.+ +...........++.++|.+......
T Consensus 583 ~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~ 660 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 3456677777777767888888899999999998875 2566677765532 12212222222344445555544443
Q ss_pred cccHHHHHHHHHHHHHHH
Q 041109 392 HWSKSVKQLTENVKVMLE 409 (467)
Q Consensus 392 HWn~~Vr~~a~~vl~~l~ 409 (467)
+=+..||..|..++..+.
T Consensus 661 ~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 661 YAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 325567777666655543
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.20 E-value=1.3 Score=41.97 Aligned_cols=177 Identities=7% Similarity=0.053 Sum_probs=123.9
Q ss_pred HHhcCCCChHHHHHHHHHHHH-Hhhh---hc----cchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC-CC
Q 041109 179 LSLFQSEDLRERDSLKNIYHR-IYAK---FT----FYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT-VP 249 (467)
Q Consensus 179 l~lf~S~DprER~~LktiLhr-IY~k---f~----~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa-~P 249 (467)
-+.+.|.|.+||...-.-|.. +-.. .. .+.. +-+.+...+-...+..-+...+..+|.+.+|+. ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~-----~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN-----LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHH-----HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 344589999999887777777 6532 22 1112 222333333233344445677999999999987 66
Q ss_pred chHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC-CC----cHHHHHHHhhccCCCCCchhHhHHHHHHHHHhh
Q 041109 250 LKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE-PA----LGGLVARGILKYWPVTNCRKEVLLIGELEELVD 324 (467)
Q Consensus 250 LKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd-p~----L~~~vi~~llk~WP~tns~KevlFL~el~~ile 324 (467)
....|..-+.-.++..++.+.- .-.....+++..+++.- |. -.+.++..|+..+-..+++=....+..|..+++
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~-~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKP-SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 6523444445667777777663 33567888999998753 22 134677777777776788888899999999998
Q ss_pred cCCh--HHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhh
Q 041109 325 SIDP--AQYRRLA-LPLCTKITKCLNSCNSEVAERALYVW 361 (467)
Q Consensus 325 ~~~~--~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w 361 (467)
..+. ..|.+.. ..+...+.+|+...+..|=++|...+
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7764 8888888 89999999999999999988887655
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=93.67 E-value=10 Score=41.66 Aligned_cols=242 Identities=10% Similarity=0.064 Sum_probs=132.6
Q ss_pred hhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhh---hhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHH
Q 041109 167 RDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYA---KFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSII 243 (467)
Q Consensus 167 k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~---kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sII 243 (467)
.+|+ ...+..|+..++..+.+....+.+.+..|.. .-.....++..-+.-.+..+-.-.+....+..+++.+++|.
T Consensus 478 ~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 478 VPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp GGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4444 5677788888888877776666666666543 22222345544443333221111112223345778777777
Q ss_pred hccCCCchHHHHHHHHHHhhhccCCc------------ch----hhhH----HHHHHHHHHHHhcCCCcH-----HHHHH
Q 041109 244 NGFTVPLKEEHKLFLIRVLIPLHKSK------------GM----QAYH----RQLAYCVSQFVQKEPALG-----GLVAR 298 (467)
Q Consensus 244 ngfa~PLKeeh~~fl~~vLlPLhk~~------------~~----~~y~----~qL~~cv~qf~~kdp~L~-----~~vi~ 298 (467)
......+.+.-...+.+ ++.+.+.. .. ..+. ..+..++. -+.. ... ..++.
T Consensus 557 ~~~g~~~~~~~~~i~~~-~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~-~l~~--~~~~~~~~~~~~~ 632 (852)
T 4fdd_A 557 TALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAE-GLGG--NIEQLVARSNILT 632 (852)
T ss_dssp HHHGGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHH-HHGG--GGHHHHHTCCHHH
T ss_pred HHHhHhHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHH-HHhH--hHHHHhcCCcHHH
Confidence 75433222211121111 11121110 00 1122 22222222 2221 111 23466
Q ss_pred HhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccccch
Q 041109 299 GILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVF 378 (467)
Q Consensus 299 ~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~~i~ 378 (467)
.++..|.-.++.=.......+.++...++ ++|.+....+...+.+.++...+.|...|.... -.+...+.......+
T Consensus 633 ~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~al--g~i~~~~~~~~~p~~ 709 (852)
T 4fdd_A 633 LMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAI--GEISIQMGIEMQPYI 709 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHH--HHHHHHHGGGGGGGT
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHH--HHHHHHhhHhHHHHH
Confidence 66676765555555567788888887776 578888888999999999888888866665443 333334433334444
Q ss_pred hhhhHHHHHHhhc-cccHHHHHHHHHHHHHHHhcCHHHH
Q 041109 379 PVIVEGMEKNLKL-HWSKSVKQLTENVKVMLEQMDPNLY 416 (467)
Q Consensus 379 Pii~~~L~~~~~~-HWn~~Vr~~a~~vl~~l~e~D~~lf 416 (467)
+.+++.|.+..++ .-+.+++..+..++--|....|...
T Consensus 710 ~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 5555555554432 5678899888888888888887654
No 12
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.63 E-value=1.8 Score=40.02 Aligned_cols=179 Identities=9% Similarity=0.048 Sum_probs=117.8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHhhhhccc-hHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHHH
Q 041109 178 LLSLFQSEDLRERDSLKNIYHRIYAKFTFY-RSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKL 256 (467)
Q Consensus 178 Ll~lf~S~DprER~~LktiLhrIY~kf~~~-R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~ 256 (467)
+.+.++|.|.+||...-.-|..+-...... .... ..+.+.+..-+....+..-....+..+|.+.++....+.. |..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HHH
Confidence 666778999999998777777765432110 0011 1223334343322333444556788888888876555544 333
Q ss_pred HHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChH-HHHHHH
Q 041109 257 FLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPA-QYRRLA 335 (467)
Q Consensus 257 fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~-~f~~i~ 335 (467)
-+...|+...+.+.-. -......++..+++.-+ ...++..++...--.++.-...-+.-|..++...+++ .+....
T Consensus 98 ~ilp~ll~~l~d~~~~-vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPN-VVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHH-HHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 4456666666665533 34577777888876543 3566777777766667777888899999998887765 356677
Q ss_pred HHHHHHHhHhhCCCCHHHHHHHHHhh
Q 041109 336 LPLCTKITKCLNSCNSEVAERALYVW 361 (467)
Q Consensus 336 ~~lf~~la~ci~S~h~qVAErAL~~w 361 (467)
..+...+..|++..+..|=++|....
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 78889999999999998888877544
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.33 E-value=6.8 Score=38.68 Aligned_cols=233 Identities=11% Similarity=0.065 Sum_probs=125.9
Q ss_pred hhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhhhhhccCCccChHHHHHHHHHHH
Q 041109 165 TLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMR-KAMNDVFLQYNFETEKHCGIGELLEIWGSII 243 (467)
Q Consensus 165 ~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Ir-k~i~n~f~~fi~e~~~~~GI~ELLeil~sII 243 (467)
..+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ..+-..+.+++.......-....++.++.+.
T Consensus 99 ~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 334445567889999999999999999999999988765544444333 2344556666654333333445577788877
Q ss_pred hccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC---------CCcHHHHHHHhhccCCCCCchhHhH
Q 041109 244 NGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE---------PALGGLVARGILKYWPVTNCRKEVL 314 (467)
Q Consensus 244 ngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd---------p~L~~~vi~~llk~WP~tns~Kevl 314 (467)
.+-....+.....-....|+.+.+...-. -......++..+.... ....+.++..+- ..+..-...
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~ 253 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTD-VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM----HNDYKVVSP 253 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT----CSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC----CCchhHHHH
Confidence 65421112111122234455555544321 1223333444444332 234444444332 223333333
Q ss_pred HHHHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHH
Q 041109 315 LIGELEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKN 388 (467)
Q Consensus 315 FL~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~ 388 (467)
-+.-+..+.... ++....+. ..+...+..++++++..|-+.|+....| +.....+.+ ..++|.++..|..
T Consensus 254 a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~- 329 (450)
T 2jdq_A 254 ALRAVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID--ANIFPALISILQT- 329 (450)
T ss_dssp HHHHHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHH-
T ss_pred HHHHHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhc-
Confidence 444455544322 22222221 2467788888899999998888866543 222221211 2466666665542
Q ss_pred hhccccHHHHHHHHHHHHHHHh
Q 041109 389 LKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 389 ~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
=+..||..|..++.-+..
T Consensus 330 ----~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 330 ----AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp ----SCHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHc
Confidence 256778777777766654
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.25 E-value=10 Score=43.50 Aligned_cols=249 Identities=14% Similarity=0.085 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccccCCCCCCCcchHHHHHHHH
Q 041109 76 QQDLKRFKLLQLLSITKSPKKQLDDYILSHLISMISANLFRPLPPPISTPITGDLPEDEELFSSPQPLWPHLQIVYDILL 155 (467)
Q Consensus 76 ~Ke~K~~~L~el~~~v~~~~~~l~e~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~~~~edep~~~~e~sWpHLqlVY~ill 155 (467)
.++.++.++.+|.+.+..+...+++.....++..+-.- + .++.|..-+.....+.
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~----L---------------------~d~~~~vR~~A~~~L~ 73 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKL----L---------------------EDKNGEVQNLAVKCLG 73 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHH----T---------------------TCSSHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHH----h---------------------cCCCHHHHHHHHHHHH
Confidence 46788999999999998776556665555555544221 1 1233444455555665
Q ss_pred HHHhcCCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccc------hHHHHHHHHHHHhhhhhccCCc
Q 041109 156 RLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFY------RSFMRKAMNDVFLQYNFETEKH 229 (467)
Q Consensus 156 ~fi~s~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~------R~~Irk~i~n~f~~fi~e~~~~ 229 (467)
.++...... ++ ...+..|+..+.+++++-|...-..|..|....... ..-....+-..+.+.+.+....
T Consensus 74 ~l~~~~~~~----~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~ 148 (1230)
T 1u6g_C 74 PLVSKVKEY----QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV 148 (1230)
T ss_dssp HHHTTSCHH----HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH
T ss_pred HHHHhCCHH----HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch
Confidence 555443221 11 346667888889999988988777777776554332 1112233334444444333344
Q ss_pred cChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCC-----CcHHHHHHHhhcc-
Q 041109 230 CGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEP-----ALGGLVARGILKY- 303 (467)
Q Consensus 230 ~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp-----~L~~~vi~~llk~- 303 (467)
.-....+++++.+...+...+.+.. .-+...++++...+.- .....-..|+..++..-+ .+...++.++..-
T Consensus 149 ~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~-~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~ 226 (1230)
T 1u6g_C 149 SVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRL-AVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND 226 (1230)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSH-HHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC
Confidence 4556778999988875444444322 3345667777766543 345566778887776543 3455566666542
Q ss_pred CCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhh
Q 041109 304 WPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVW 361 (467)
Q Consensus 304 WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w 361 (467)
|+ ... ...+.-+..+....+. .|......++..+..++..++-.|-+.|+..|
T Consensus 227 ~~--~~r--~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 227 SM--STT--RTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp SS--CSC--TTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred ch--hHH--HHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 111 1235555555555543 55556666777777777777666555555444
No 15
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.21 E-value=8.6 Score=37.48 Aligned_cols=99 Identities=8% Similarity=-0.020 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHhcCCchhhhhcCCHHHHHHHHH-hcCCCChHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHhhhh
Q 041109 146 HLQIVYDILLRLVLHVDPKTLRDYIDHRFLTNLLS-LFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRK-AMNDVFLQYN 223 (467)
Q Consensus 146 HLqlVY~ill~fi~s~d~~~~k~~id~~Fi~~Ll~-lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk-~i~n~f~~fi 223 (467)
+-...-+.|..++.+.| .+..+....-+..|+. ++.|+++.=|...-.+|-.|-+.....|..+.+ ..-..+.+.+
T Consensus 56 ~k~~Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 33455677777776544 3334433445677999 999999999999999999988766555544432 2333444444
Q ss_pred hccCCccChHHHHHHHHHHHhcc
Q 041109 224 FETEKHCGIGELLEIWGSIINGF 246 (467)
Q Consensus 224 ~e~~~~~GI~ELLeil~sIIngf 246 (467)
............+..+++++.|+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHcCC
Confidence 43223333455566666666665
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=89.22 E-value=20 Score=36.62 Aligned_cols=231 Identities=12% Similarity=0.060 Sum_probs=121.9
Q ss_pred hhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHhhhhhccCCccChHHHHHHHHHHHhc
Q 041109 167 RDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRK-AMNDVFLQYNFETEKHCGIGELLEIWGSIING 245 (467)
Q Consensus 167 k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk-~i~n~f~~fi~e~~~~~GI~ELLeil~sIIng 245 (467)
...++...+..|+.++.++|+.-|...-..|..|-+.....|..+.. .+-..+...+.......-.....+.++.+..+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 34444567888999999999999999999999987654444544443 23344555554433444445567777777776
Q ss_pred cCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCchhHhHHH
Q 041109 246 FTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEP---------ALGGLVARGILKYWPVTNCRKEVLLI 316 (467)
Q Consensus 246 fa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp---------~L~~~vi~~llk~WP~tns~KevlFL 316 (467)
...+- .....-....|+.|.....-.. ...-..++......++ .....++..|- ..+..-...-+
T Consensus 234 ~~~~~-~~~~~~~l~~L~~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~----~~~~~v~~~a~ 307 (528)
T 4b8j_A 234 KPQPS-FEQTRPALPALARLIHSNDEEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL----HPSPSVLIPAL 307 (528)
T ss_dssp SSCCC-HHHHTTHHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT----CSCHHHHHHHH
T ss_pred CCCCc-HHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc----CCChhHHHHHH
Confidence 53222 2222334566667766554322 2233334444433322 22333333332 12222223334
Q ss_pred HHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCC-CHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHHh
Q 041109 317 GELEELVDSIDPAQYRRLA-LPLCTKITKCLNSC-NSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKNL 389 (467)
Q Consensus 317 ~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~-h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~~ 389 (467)
.-|..+... .+.....+. ..+...|..++.++ +..|.+.|+....| +.....+.+ ..++|.++..|..
T Consensus 308 ~~L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~--~~~i~~L~~lL~~-- 382 (528)
T 4b8j_A 308 RTVGNIVTG-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVIN--AGIIGPLVNLLQT-- 382 (528)
T ss_dssp HHHHHHTTS-CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTCHHHHHHHHHH--
T ss_pred HHHHHHHcC-CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHH--CCCHHHHHHHHhc--
Confidence 444444332 222222222 23566677777787 88888888755443 222222211 2356666554432
Q ss_pred hccccHHHHHHHHHHHHHHHhc
Q 041109 390 KLHWSKSVKQLTENVKVMLEQM 411 (467)
Q Consensus 390 ~~HWn~~Vr~~a~~vl~~l~e~ 411 (467)
. +..++..|..++.-+..-
T Consensus 383 --~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 383 --A-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp --S-CHHHHHHHHHHHHHHHHH
T ss_pred --C-CHHHHHHHHHHHHHHHcC
Confidence 1 667777666666655544
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.26 E-value=13 Score=38.21 Aligned_cols=227 Identities=10% Similarity=0.046 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC
Q 041109 169 YIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMR-KAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT 247 (467)
Q Consensus 169 ~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Ir-k~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa 247 (467)
.++...+..|+.++.++|+.-|...-..|..|-+.....|..+. ..+-..+.+.+.. ....-....++.++.+..+-.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCC
Confidence 33445677889999999999999999999998765444444433 2333455555544 222233445677777776642
Q ss_pred CCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCchhHhHHHHH
Q 041109 248 VPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEP---------ALGGLVARGILKYWPVTNCRKEVLLIGE 318 (467)
Q Consensus 248 ~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp---------~L~~~vi~~llk~WP~tns~KevlFL~e 318 (467)
.........-....|+.|.+...- .-......++..+....+ .+...++..+ ++ .+..-...-+.-
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-~~---~~~~v~~~a~~~ 322 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-SH---ESTLVQTPALRA 322 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-GC---SCHHHHHHHHHH
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-CC---CChhhHHHHHHH
Confidence 222223333345667777766542 222334455555554433 3334444433 21 222222233444
Q ss_pred HHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhcch-----h-HHHHHhhccccchhhhhHHHHHHhhc
Q 041109 319 LEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWNNE-----Q-FVRMVSSSLEDVFPVIVEGMEKNLKL 391 (467)
Q Consensus 319 l~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~N~-----~-~~~li~~~~~~i~Pii~~~L~~~~~~ 391 (467)
|..+... .++....+. ..+...+..++.+++..|-+.|+..+.|- . +..++ + ..++|.++..|.
T Consensus 323 L~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~-~--~~~l~~L~~lL~----- 393 (530)
T 1wa5_B 323 VGNIVTG-NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI-D--ANLIPPLVKLLE----- 393 (530)
T ss_dssp HHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-H--TTCHHHHHHHHH-----
T ss_pred HHHHHcC-CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-H--CCCHHHHHHHHh-----
Confidence 4444332 222222222 24667788888999999988887665442 1 11222 1 235666666553
Q ss_pred cccHHHHHHHHHHHHHHHh
Q 041109 392 HWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 392 HWn~~Vr~~a~~vl~~l~e 410 (467)
+-+..++..|..++.-+..
T Consensus 394 ~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 2356777777766665543
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.20 E-value=12 Score=33.59 Aligned_cols=190 Identities=15% Similarity=0.096 Sum_probs=98.1
Q ss_pred chhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhhhhhccCCccChHHHHHHHHH
Q 041109 163 PKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMR-KAMNDVFLQYNFETEKHCGIGELLEIWGS 241 (467)
Q Consensus 163 ~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Ir-k~i~n~f~~fi~e~~~~~GI~ELLeil~s 241 (467)
+...+..++...+..|+.++.++|+.-|...-..|..+-......|..+. ...-..+.+.+... ...-....+..++.
T Consensus 34 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 34 ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALAN 112 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 33444555567899999999999999999999999988665344333333 33445566665532 22223334555555
Q ss_pred HHhccCCCchHHHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcH--------HHHHHHhhccCCCCC
Q 041109 242 IINGFTVPLKEEHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALG--------GLVARGILKYWPVTN 308 (467)
Q Consensus 242 IIngfa~PLKeeh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~--------~~vi~~llk~WP~tn 308 (467)
+..+. ++.+..+ ...|+.+.+...- .....-..++......++... -..+-.+++ ..+
T Consensus 113 l~~~~-----~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~ 183 (252)
T 4hxt_A 113 IASGP-----DEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STD 183 (252)
T ss_dssp HTTSC-----HHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSC
T ss_pred HHcCC-----HHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCC
Confidence 55331 2233222 3456666666542 234455555555555444331 122222222 122
Q ss_pred chhHhHHHHHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhcc
Q 041109 309 CRKEVLLIGELEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWNN 363 (467)
Q Consensus 309 s~KevlFL~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~N 363 (467)
..-...-+.-+..+.. -+++....+. ..+...+.+.+.+.+..|.+.|+....|
T Consensus 184 ~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 184 SEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 2222222333333332 1222222221 2255666777777777777777765543
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.34 E-value=19 Score=41.28 Aligned_cols=181 Identities=11% Similarity=0.035 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 174 FLTNLLSLFQSEDLRERDSLKNIYHRIYAKF-TFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 174 Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf-~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
-+.+|++.+.|+|+..|..-..-|...+.+. .....-..+.+-..+.+.+... ...-=......++.+..+.. +
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-~~~vR~~A~~~L~~l~~~~~----~ 81 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVK----E 81 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhCC----H
Confidence 4667888899999999987766555544321 1111111122222333333221 11101123555666666542 2
Q ss_pred HHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCc----------HHHHHHHhhccCC-CCCchhHhHHHHHHHH
Q 041109 253 EHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPAL----------GGLVARGILKYWP-VTNCRKEVLLIGELEE 321 (467)
Q Consensus 253 eh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L----------~~~vi~~llk~WP-~tns~KevlFL~el~~ 321 (467)
++...+...|+.......-.. ...-..++.++++.-+.- ...++..|++.=- ..+......-+.-+.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 455555566666554443322 233455666665443321 2333333332211 1223334444555556
Q ss_pred HhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhh
Q 041109 322 LVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVW 361 (467)
Q Consensus 322 ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w 361 (467)
+++..+. .+......++..+..++.+++..|-++|+...
T Consensus 161 ~~~~~~~-~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al 199 (1230)
T 1u6g_C 161 MLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL 199 (1230)
T ss_dssp HHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred HHHHhHh-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6543322 23334567888888899999998888887543
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=83.01 E-value=14 Score=39.06 Aligned_cols=175 Identities=11% Similarity=0.096 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 173 RFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 173 ~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
..+..|.+.+.+.|..-|..+-.-++++-.+|...-.++. +.+.+++... ...-..|.+..++.|+.++.. +++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v----~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~-~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV----STLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN-KYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-SCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH----HHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-hHH
Confidence 4666788888888998888888888887777754333333 4445544332 223356677788888887532 222
Q ss_pred HHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHH
Q 041109 253 EHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYR 332 (467)
Q Consensus 253 eh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~ 332 (467)
.-...+.. ....-....-......++..|...-+. ...+++.+++.+...++.-+...|.-+..+....+... .
T Consensus 427 ~~v~~L~~----~l~~~~~~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~ 500 (591)
T 2vgl_B 427 SIIATLCE----NLDSLDEPDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-Q 500 (591)
T ss_dssp TTHHHHHH----TTTTCCSHHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-H
T ss_pred HHHHHHHH----HHHhccCHHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-H
Confidence 22222222 222212222355677788888766544 67999999999988777778888888888887665422 2
Q ss_pred HHHHHHHHHHhHhh-CCCCHHHHHHHHHhhc
Q 041109 333 RLALPLCTKITKCL-NSCNSEVAERALYVWN 362 (467)
Q Consensus 333 ~i~~~lf~~la~ci-~S~h~qVAErAL~~w~ 362 (467)
.... ..+..|. +|.+..|=+||..+|.
T Consensus 501 ~~i~---~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELVQ---QVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHH---HHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHH---HHHHHhhhcCCChHHHHHHHHHHH
Confidence 2222 3344553 5799999999987764
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.72 E-value=49 Score=33.78 Aligned_cols=224 Identities=12% Similarity=0.065 Sum_probs=117.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAKF--TFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~kf--~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
+..|+..+.|+|+..|...-..|.++..+. ...+..+...+-..|.+++.......-..+.++.++.|..|. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-----~ 163 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-----S 163 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-----H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-----H
Confidence 566888888999988888888888875542 233444554555666666654333333455677777776653 2
Q ss_pred HHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCC---------CcHHHHHHHhhccCCCCCchhHhHHHHH
Q 041109 253 EHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEP---------ALGGLVARGILKYWPVTNCRKEVLLIGE 318 (467)
Q Consensus 253 eh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp---------~L~~~vi~~llk~WP~tns~KevlFL~e 318 (467)
++...+ ...|+.|.+.... ....+-..++..+...++ .....+++.+-. .+..=...-+.-
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~-~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~ 238 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSV-EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS----NKPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS----CCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc----CCHHHHHHHHHH
Confidence 333322 2344444443322 223344455555554433 333444443332 222222223444
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHHhhccc
Q 041109 319 LEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKNLKLHW 393 (467)
Q Consensus 319 l~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~~~~HW 393 (467)
+..+...-++..-......+...|...+.+.+..|...|+..+.| +.....+.+ ..++|.++..|. |=
T Consensus 239 L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~v~~Lv~lL~-----~~ 311 (530)
T 1wa5_B 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID--VRIPKRLVELLS-----HE 311 (530)
T ss_dssp HHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH--TTCHHHHHHGGG-----CS
T ss_pred HHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh--cCcHHHHHHHHC-----CC
Confidence 455543221111111223455666677788888888777755432 111222211 235565555442 34
Q ss_pred cHHHHHHHHHHHHHHHhcCHHH
Q 041109 394 SKSVKQLTENVKVMLEQMDPNL 415 (467)
Q Consensus 394 n~~Vr~~a~~vl~~l~e~D~~l 415 (467)
+..++..|..++..+..-++..
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHH
Confidence 6788888888888877655543
No 22
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.71 E-value=61 Score=34.22 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=43.4
Q ss_pred cHHHHHHHhhccCCCCCch-----hHhHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHhHhhCC
Q 041109 292 LGGLVARGILKYWPVTNCR-----KEVLLIGELEELVDSID-PAQYRRLALPLCTKITKCLNS 348 (467)
Q Consensus 292 L~~~vi~~llk~WP~tns~-----KevlFL~el~~ile~~~-~~~f~~i~~~lf~~la~ci~S 348 (467)
+...+.+.++-.|-..... .+.-+|.-+.++...+. .+.-......+|..+-+.+=.
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 4445556666677766665 88899999999999987 677788888899888877654
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=80.49 E-value=45 Score=32.60 Aligned_cols=209 Identities=11% Similarity=0.114 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhhhccc-hHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccC------
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFY-RSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFT------ 247 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~-R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa------ 247 (467)
+..|...+.++|+.-|.....+|..+..++... ++++...+-..+...... ....-....+++++.+...-.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556778899999998888888876655321 233331111222221111 111222445666666654310
Q ss_pred -----------CCchHHHHHHHHHHhhhc----cCCc------chhhhHHHHHHHHHHHHhcCC-CcHHHHHHHhhccCC
Q 041109 248 -----------VPLKEEHKLFLIRVLIPL----HKSK------GMQAYHRQLAYCVSQFVQKEP-ALGGLVARGILKYWP 305 (467)
Q Consensus 248 -----------~PLKeeh~~fl~~vLlPL----hk~~------~~~~y~~qL~~cv~qf~~kdp-~L~~~vi~~llk~WP 305 (467)
.+...-.+.+ ...++|. .... .-......-..|+..+...-+ .....++..+...--
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~ 376 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK 376 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred ccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 1111111111 1223332 2211 000112223334444443333 233334443333322
Q ss_pred CCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhc--cccchhhhhH
Q 041109 306 VTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSS--LEDVFPVIVE 383 (467)
Q Consensus 306 ~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~--~~~i~Pii~~ 383 (467)
-.+......-+.-+..+.+.+.++.+......++..+..+++++|..|-.+|+.... .+...+... ....++.+++
T Consensus 377 ~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~--~~~~~~~~~~~~~~~l~~ll~ 454 (462)
T 1ibr_B 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLLQ 454 (462)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH--HHHHHGGGGCCSTTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHH
Confidence 334444555666777777766655555666778899999999999999888876664 333443332 1234666666
Q ss_pred HHHH
Q 041109 384 GMEK 387 (467)
Q Consensus 384 ~L~~ 387 (467)
.|.+
T Consensus 455 ~Ll~ 458 (462)
T 1ibr_B 455 CLIE 458 (462)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6654
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=79.79 E-value=30 Score=30.17 Aligned_cols=179 Identities=13% Similarity=0.044 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCc
Q 041109 172 HRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYR-SFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPL 250 (467)
Q Consensus 172 ~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R-~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PL 250 (467)
..+...|+.++.|+|+.-|...-..|..+-......| .++....-..+.+.+... ...-....+..++.+..|-
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---- 85 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG---- 85 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC----
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC----
Confidence 3445568888899999999888888888764333332 333333444555655443 2222344566666665442
Q ss_pred hHHHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCc---------HHHHHHHhhccCCCCCchhHhHHH
Q 041109 251 KEEHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPAL---------GGLVARGILKYWPVTNCRKEVLLI 316 (467)
Q Consensus 251 Keeh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L---------~~~vi~~llk~WP~tns~KevlFL 316 (467)
++.+..+ ...|+.+.+..... -...-..++..+...++.. ...+++.+- ..+..=+..-+
T Consensus 86 -~~~~~~i~~~g~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~ 159 (210)
T 4db6_A 86 -NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEAL 159 (210)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHH
T ss_pred -cHHHHHHHHCCCHHHHHHHHcCCcHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHH
Confidence 2333322 35566666666422 2233444455554433322 222222222 12222222223
Q ss_pred HHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109 317 GELEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 317 ~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~ 362 (467)
.-+..+... +++.-..+. ......|.+.+.+.+..|.+.|+..+.
T Consensus 160 ~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 160 WALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333333332 122222221 235667777777888888887776653
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=79.13 E-value=17 Score=34.13 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccc------cch-hhhhHHHHHHhh
Q 041109 318 ELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLE------DVF-PVIVEGMEKNLK 390 (467)
Q Consensus 318 el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~------~i~-Pii~~~L~~~~~ 390 (467)
-+..+++.++|.........+...|..++++.+.+|=+.|+.+... ++..... ..+ |.++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~-----~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA-----SMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH-----HHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 3555666665522111245677788889999999999999987643 2222211 134 66666666554
Q ss_pred ccccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Q 041109 391 LHWSKSVKQLTENVKVMLEQM-DPNLYSKCLEAT 423 (467)
Q Consensus 391 ~HWn~~Vr~~a~~vl~~l~e~-D~~lf~~~~~~~ 423 (467)
++=+..||..|..++..++.. ..+-+.......
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 344788999999998887643 333454444443
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=76.80 E-value=26 Score=31.55 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=107.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHH
Q 041109 176 TNLLSLFQSEDLRERDSLKNIYHRIYAKF-TFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEH 254 (467)
Q Consensus 176 ~~Ll~lf~S~DprER~~LktiLhrIY~kf-~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh 254 (467)
..++.++.|+|+..|......|.++.... ...+.++....-..+.+++.... ..-....+.+++.+..|. ++.
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-----~~~ 88 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGG-----NEQ 88 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC-----HHH
Confidence 34667778899988888888886655542 22233444444456666665433 222334456666665542 233
Q ss_pred HHH-----HHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHH-----HHHHHhhccCCCCCchhHhHHHHHHHHHhh
Q 041109 255 KLF-----LIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGG-----LVARGILKYWPVTNCRKEVLLIGELEELVD 324 (467)
Q Consensus 255 ~~f-----l~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~-----~vi~~llk~WP~tns~KevlFL~el~~ile 324 (467)
+.. ....|+.|.+...- .-...-..++..+...++.-.. .++..|++.--..+..-...-+.-+..+..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 332 23556667766542 2233444444444443332201 122223322212222222222333333332
Q ss_pred cCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhc-----chhHHHHHhhccccchhhhhHHHHHHhhccccHHHH
Q 041109 325 SIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWN-----NEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVK 398 (467)
Q Consensus 325 ~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~-----N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr 398 (467)
. +++....+. ..+...|...+.+++..|.+.|+..+. ++.....+.+. .++|. |.+.. .+=+..++
T Consensus 168 ~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~----L~~ll-~~~~~~v~ 239 (252)
T 4db8_A 168 G-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA--GALEK----LEQLQ-SHENEKIQ 239 (252)
T ss_dssp S-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHH----HHTTT-TCSSSHHH
T ss_pred C-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHH----HHHHh-CCCCHHHH
Confidence 1 222222221 335667778888889999888875543 23322222221 23444 33332 24477888
Q ss_pred HHHHHHHHHH
Q 041109 399 QLTENVKVML 408 (467)
Q Consensus 399 ~~a~~vl~~l 408 (467)
..|..+|.-|
T Consensus 240 ~~A~~~L~~l 249 (252)
T 4db8_A 240 KEAQEALEKL 249 (252)
T ss_dssp HTHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 27
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=76.76 E-value=8.2 Score=33.62 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=61.0
Q ss_pred HHHHhcCCCcHHHHHHHhhccCCCC--CchhHhHHHHHHHHHhhcCC-------hHHHHHHHHHHHHHHhHhhCCCCHHH
Q 041109 283 SQFVQKEPALGGLVARGILKYWPVT--NCRKEVLLIGELEELVDSID-------PAQYRRLALPLCTKITKCLNSCNSEV 353 (467)
Q Consensus 283 ~qf~~kdp~L~~~vi~~llk~WP~t--ns~KevlFL~el~~ile~~~-------~~~f~~i~~~lf~~la~ci~S~h~qV 353 (467)
.+++-.+..-+..++..+.++-=.. ++.|.+.+|..+.+|+...- -..|.+++.++|..+....++..-+.
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444445555555555555555444 77999999999999996332 23688899999999988878888889
Q ss_pred HHHHHHhhcchh
Q 041109 354 AERALYVWNNEQ 365 (467)
Q Consensus 354 AErAL~~w~N~~ 365 (467)
.+|-+.+|....
T Consensus 106 v~rvl~iWeer~ 117 (142)
T 2km4_A 106 LSRVVNILKERN 117 (142)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhhccC
Confidence 999999997654
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=74.58 E-value=30 Score=31.08 Aligned_cols=183 Identities=13% Similarity=0.028 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHH-HHHHHHhhhhhccCCccChHHHHHHHHHHHhcc
Q 041109 168 DYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRK-AMNDVFLQYNFETEKHCGIGELLEIWGSIINGF 246 (467)
Q Consensus 168 ~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk-~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngf 246 (467)
..++...+..|+.++.++|+.-|...-.+|..+-......|..+.. ..-..+.+.+... ...-....+..++.+..+.
T Consensus 49 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGG 127 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCC
Confidence 3444567888999999999999999999998886544444333332 2445566666542 2333444566666665442
Q ss_pred CCCchHHH-HHH----HHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCC---------cHHHHHHHhhccCCCCCchhH
Q 041109 247 TVPLKEEH-KLF----LIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPA---------LGGLVARGILKYWPVTNCRKE 312 (467)
Q Consensus 247 a~PLKeeh-~~f----l~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~---------L~~~vi~~llk~WP~tns~Ke 312 (467)
+.. ..+ ....|+.+.+..... ....-..++......++. ....+++.+ +. .+..-.
T Consensus 128 -----~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~---~~~~v~ 197 (252)
T 4db8_A 128 -----NEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SS---PNEQIL 197 (252)
T ss_dssp -----HHHHHHHHHTTHHHHHHHGGGCSCHH-HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG-GC---SSHHHH
T ss_pred -----chHHHHHHHCCCHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH-CC---CCHHHH
Confidence 111 122 235566666665332 233445555555544322 233333322 21 122222
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHH-HHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109 313 VLLIGELEELVDSIDPAQYRRLAL-PLCTKITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 313 vlFL~el~~ile~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAL~~w~ 362 (467)
..-+.-|..+.. -+++....+.. .....|...+.+.+..|.+.|+....
T Consensus 198 ~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 198 QEALWALSNIAS-GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 223333333332 12333333322 25666777777777777777765543
No 29
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=72.55 E-value=46 Score=32.15 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=69.4
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhc----cccchhhhhHHHHH
Q 041109 312 EVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSS----LEDVFPVIVEGMEK 387 (467)
Q Consensus 312 evlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~----~~~i~Pii~~~L~~ 387 (467)
.+--++.|.+.++. .++.......-+|+-++--+.+.|++|+.++|.+.. .++..+.+. .+.-...++|.|..
T Consensus 63 ~~~ale~L~~~l~~-~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~Lve 139 (266)
T 2of3_A 63 HLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLL 139 (266)
T ss_dssp HHHHHHHHHHHHHH-CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 33344455555544 345555666667887776666789999999998884 334434332 11113455666654
Q ss_pred HhhccccHHHHHHHHHHHHHHHhc-CHH-HHHHHHHHH
Q 041109 388 NLKLHWSKSVKQLTENVKVMLEQM-DPN-LYSKCLEAT 423 (467)
Q Consensus 388 ~~~~HWn~~Vr~~a~~vl~~l~e~-D~~-lf~~~~~~~ 423 (467)
- -.|=.+.||+.+..+++.+.++ .|. +|+.+.+..
T Consensus 140 K-lGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ 176 (266)
T 2of3_A 140 K-TGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL 176 (266)
T ss_dssp G-GGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG
T ss_pred H-hCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 3 3677899999999999999884 344 677766543
No 30
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=71.36 E-value=5.5 Score=34.00 Aligned_cols=82 Identities=7% Similarity=0.200 Sum_probs=62.8
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcC---C---hHHHHHHHHHHHHHHhHhhCCCCHHHHH
Q 041109 282 VSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSI---D---PAQYRRLALPLCTKITKCLNSCNSEVAE 355 (467)
Q Consensus 282 v~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~---~---~~~f~~i~~~lf~~la~ci~S~h~qVAE 355 (467)
+.+++-.+..-+..++..+.++--.+.+.+.+.+|..+.+|+... . -..|.+.+..+|..+.......+-+...
T Consensus 26 ~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~ 105 (135)
T 4fu3_A 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLE 105 (135)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555556666666666666666778889999999999998543 1 2347888899999998888888888889
Q ss_pred HHHHhhcc
Q 041109 356 RALYVWNN 363 (467)
Q Consensus 356 rAL~~w~N 363 (467)
+-+.+|..
T Consensus 106 kll~iW~~ 113 (135)
T 4fu3_A 106 RLLNIWQE 113 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999975
No 31
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=70.15 E-value=1e+02 Score=31.64 Aligned_cols=197 Identities=9% Similarity=0.057 Sum_probs=102.1
Q ss_pred cCCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHH-HHHHHhhhhhccCCccChHHHH--
Q 041109 160 HVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKA-MNDVFLQYNFETEKHCGIGELL-- 236 (467)
Q Consensus 160 s~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~-i~n~f~~fi~e~~~~~GI~ELL-- 236 (467)
+.++...+..++..-|-.|+.++.|+|+.-|...-..|..|-+.-...|..|... .-..+...+...........++
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 3333334445556678889999999999999999999999876655666665442 3344555554433322223333
Q ss_pred --HHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC---------CCcHHHHHHHhhccCC
Q 041109 237 --EIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE---------PALGGLVARGILKYWP 305 (467)
Q Consensus 237 --eil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd---------p~L~~~vi~~llk~WP 305 (467)
..+..+..|-..+.......=...+|..|..+..-.. ...-..++......+ ......++..+ +
T Consensus 229 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~--- 303 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-G--- 303 (529)
T ss_dssp HHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH-HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-T---
T ss_pred HHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH-HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-c---
Confidence 3344444443333322333333455666666554332 122233333333222 23333333332 2
Q ss_pred CCCchhHhHHHHHHHHHhhcCChHHHHHH-HHHHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109 306 VTNCRKEVLLIGELEELVDSIDPAQYRRL-ALPLCTKITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 306 ~tns~KevlFL~el~~ile~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAL~~w~ 362 (467)
..+..-+..-+.-+..|... +++.-..+ .......+..++.|++..|-+.|+..+.
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 23333334445555555432 22222222 1224556677888999888877765543
No 32
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=70.14 E-value=1.3e+02 Score=32.97 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=78.8
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCC--chHH
Q 041109 177 NLLSLFQSEDLRERDSLKNIYHRIYAKFT-FYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVP--LKEE 253 (467)
Q Consensus 177 ~Ll~lf~S~DprER~~LktiLhrIY~kf~-~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~P--LKee 253 (467)
++++.+. .|+..++.+..+++++-..+. ...+++-..+..++..|- . .+++.+|.+++.++..|... ..+
T Consensus 690 ~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~--~---~~~~~~l~l~~~li~~f~~~~~~~~- 762 (963)
T 2x19_B 690 KVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYS--T---IPQASALDLTRQLVHIFAHEPAHFP- 762 (963)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHH--H---SCCHHHHHHHHHHHHHHTTCTTTCH-
T ss_pred HHHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHH--c---CCccHHHHHHHHHHHHhCCCcchHH-
Confidence 3444432 466677777777777432211 012233333333332221 1 24678999999999955432 111
Q ss_pred HHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHH-H
Q 041109 254 HKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQY-R 332 (467)
Q Consensus 254 h~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f-~ 332 (467)
.+..+.+.+..|+...+.+++.-. +.=..-|+..+..++..++..-+ .
T Consensus 763 ----------------~~~~~l~~~~~~~l~~~~~~~~~~---------------pd~~~~~f~ll~~~~~~~~~~~~~~ 811 (963)
T 2x19_B 763 ----------------PIEALFLLVTSVTLTLFQQGPRDH---------------PDIVDSFMQLLAQALKRKPDLFLCE 811 (963)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHCTTTC---------------HHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred ----------------HHHHHHHHHHHHHHHHHhhCcccC---------------chHHHHHHHHHHHHHHhCcHHHcCC
Confidence 122234455555555555443211 11122344455555544333222 1
Q ss_pred HH-HHHHHHHHhHhhCCCCHHHHHHHHHhhcc
Q 041109 333 RL-ALPLCTKITKCLNSCNSEVAERALYVWNN 363 (467)
Q Consensus 333 ~i-~~~lf~~la~ci~S~h~qVAErAL~~w~N 363 (467)
.. ...++..+..++..++..|+..|+.+|.+
T Consensus 812 ~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~ 843 (963)
T 2x19_B 812 RLDVKAVFQCAVLALKFPEAPTVKASCGFFTE 843 (963)
T ss_dssp TSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 22 56678888889999999999999988854
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=67.96 E-value=33 Score=39.04 Aligned_cols=210 Identities=9% Similarity=0.038 Sum_probs=110.0
Q ss_pred HHHHHH-hcC-CCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhcc------CCccChHHHHHHHHHHHhcc
Q 041109 175 LTNLLS-LFQ-SEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFET------EKHCGIGELLEIWGSIINGF 246 (467)
Q Consensus 175 i~~Ll~-lf~-S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~------~~~~GI~ELLeil~sIIngf 246 (467)
|.+.+. .++ +.|+.+|.....+|..+=..--. | .+....+... -+|.| +.++...|+
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~a---w------~~~~~iL~~~~~~~~~vr~fa----~~~L~~~I~-- 72 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSSTG---W------KICHEIFSEKTKYKPSTRLIC----LQTLSEKVR-- 72 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTH---H------HHHHHHTTCTTTSCHHHHHHH----HHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhH---H------HHHHHHHhCCCCCCHHHHHHH----HHHHHHHHH--
Confidence 344443 343 23899999999988885433211 1 0111111111 11222 445555566
Q ss_pred CCCchHH----HHHHHHHHhhhccCCc----chhhhHHHHHHHHHHHHhcC-CCcHHHHHHHhhccCCCCCc-hhHhHHH
Q 041109 247 TVPLKEE----HKLFLIRVLIPLHKSK----GMQAYHRQLAYCVSQFVQKE-PALGGLVARGILKYWPVTNC-RKEVLLI 316 (467)
Q Consensus 247 a~PLKee----h~~fl~~vLlPLhk~~----~~~~y~~qL~~cv~qf~~kd-p~L~~~vi~~llk~WP~tns-~KevlFL 316 (467)
.+.++ .+..++..|+.+...- .-...-.+|+.++..++..+ |.-=...+..++..|..++. .--..||
T Consensus 73 --~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 73 --EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp --HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred --hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHH
Confidence 34556 7788888888876641 12334568888888777553 22222233333333332233 2234566
Q ss_pred HHHH----HHhhc---CChH---------------HHHHHHHHHHHHHhHhhCCCCHHHHHHHHHh---hcchhHHHHHh
Q 041109 317 GELE----ELVDS---IDPA---------------QYRRLALPLCTKITKCLNSCNSEVAERALYV---WNNEQFVRMVS 371 (467)
Q Consensus 317 ~el~----~ile~---~~~~---------------~f~~i~~~lf~~la~ci~S~h~qVAErAL~~---w~N~~~~~li~ 371 (467)
.-+. |+.+. .+.+ .+..+....+..+..|..+.+..++..+|.. |-+---.+++.
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~ 230 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIV 230 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhh
Confidence 6665 33221 1111 1344466777888888887888888777744 33321122332
Q ss_pred hccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHh
Q 041109 372 SSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 372 ~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
. ..+++.++..| . +..+|..|..++..+..
T Consensus 231 ~--~~ll~~l~~~L----~---~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 231 N--EPCMNLLYSFL----Q---IEELRCAACETMTEIVN 260 (980)
T ss_dssp C--HHHHHHHHHHT----T---SHHHHHHHHHHHHHHHH
T ss_pred c--chHHHHHHHHc----C---ChHHHHHHHHHHHHHHH
Confidence 2 33555555433 2 37788888888776643
No 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=67.66 E-value=58 Score=36.79 Aligned_cols=220 Identities=11% Similarity=0.104 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCC
Q 041109 170 IDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVP 249 (467)
Q Consensus 170 id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~P 249 (467)
.|-.-+.+++..+.++|..+|......|..+...--... . ...++.+=-...-++.| +-++...|+..-..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~-~----l~~iL~~s~~~~vr~~a----a~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQ-K----ADQILQFSTNPQSKFIA----LSILDKLITRKWKL 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGG-G----HHHHHHHCSCHHHHHHH----HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHH-H----HHHHHhhCCCHHHHHHH----HHHHHHHHHhhCcc
Confidence 344556667777777888888888887777644221110 0 01111110000001111 22233333332234
Q ss_pred chHHHHHHHHHHhhhccCCcc--------hhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHhhccCCCCCch-hH--h
Q 041109 250 LKEEHKLFLIRVLIPLHKSKG--------MQAYHRQLAYCVSQFVQK-----EPALGGLVARGILKYWPVTNCR-KE--V 313 (467)
Q Consensus 250 LKeeh~~fl~~vLlPLhk~~~--------~~~y~~qL~~cv~qf~~k-----dp~L~~~vi~~llk~WP~tns~-Ke--v 313 (467)
+.++.+..++..|+.+..... -.....+++.|+...... .|++...++..+ - ++.. ++ .
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~l 158 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENNM 158 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHHH
Confidence 667888888888888766432 134456788888776654 555555555443 1 2222 33 2
Q ss_pred HHHHHHHHHhhcCCh------------HHHHHHHHHHHHHHhHhhCC-CCHHHHHHHHHhhcc---hhHHHHHhhccccc
Q 041109 314 LLIGELEELVDSIDP------------AQYRRLALPLCTKITKCLNS-CNSEVAERALYVWNN---EQFVRMVSSSLEDV 377 (467)
Q Consensus 314 lFL~el~~ile~~~~------------~~f~~i~~~lf~~la~ci~S-~h~qVAErAL~~w~N---~~~~~li~~~~~~i 377 (467)
.+|.-+-+.+..... +.+..-...+|..+..++.+ .+..|...||..+.+ -.-.+.+.. ..+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~--~~l 236 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYE--TNI 236 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhh--hhH
Confidence 233333322221111 33555566777777777764 456677766644321 000111111 335
Q ss_pred hhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhc
Q 041109 378 FPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQM 411 (467)
Q Consensus 378 ~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~ 411 (467)
++.++..+.. +..++..|..++..+...
T Consensus 237 l~~l~~~~l~------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 237 LELLSTKFMT------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHTHHHH------SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC------CHhHHHHHHHHHHHHHhC
Confidence 5555433321 567777777777666654
No 35
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=66.48 E-value=1.5e+02 Score=32.78 Aligned_cols=214 Identities=7% Similarity=0.005 Sum_probs=102.1
Q ss_pred CCcchHHHHHHHHHHHhcCC----------------chhhhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHHhhhh
Q 041109 143 LWPHLQIVYDILLRLVLHVD----------------PKTLRDYIDHRFLTNLLSLFQS--EDLRERDSLKNIYHRIYAKF 204 (467)
Q Consensus 143 sWpHLqlVY~ill~fi~s~d----------------~~~~k~~id~~Fi~~Ll~lf~S--~DprER~~LktiLhrIY~kf 204 (467)
.+.++.-|...+++.+. +. .+.+.+|+ ..++..|..++++ -|.+++..+-+.+-.|....
T Consensus 540 ~~~~l~~vl~~l~~~l~-~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 540 NPAYIPPAINLLVRGLN-SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ---CHHHHHHHHHHHHH-SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 34678888887776552 11 11223443 3566777788887 46889999998888887643
Q ss_pred c--cchHHHHHHHHHH---HhhhhhccC----CccChHHHHHHHHHHHhccCCCchHHH--------HHHHHHHhhh---
Q 041109 205 T--FYRSFMRKAMNDV---FLQYNFETE----KHCGIGELLEIWGSIINGFTVPLKEEH--------KLFLIRVLIP--- 264 (467)
Q Consensus 205 ~--~~R~~Irk~i~n~---f~~fi~e~~----~~~GI~ELLeil~sIIngfa~PLKeeh--------~~fl~~vLlP--- 264 (467)
. ..-+++.+-+..+ +.+...+.. .-.-+.+.|+.++.++.+......+.. ..-+...++|
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 1 1122333222222 222222111 113355677888888886543221100 0111122222
Q ss_pred -ccCCc-chhhhHHHHHHHHH----HHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChH-H----HHH
Q 041109 265 -LHKSK-GMQAYHRQLAYCVS----QFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPA-Q----YRR 333 (467)
Q Consensus 265 -Lhk~~-~~~~y~~qL~~cv~----qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~-~----f~~ 333 (467)
+.... .-.........++. .+-+.-..+.+.++.+|+...-.+ .++.||+.+..++.....+ + +..
T Consensus 698 ~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~l~l~~~~i~~~~~~~~~~~~l~~ 774 (971)
T 2x1g_F 698 RIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---CCAPTLEISKTAIVMFFKDEGCKPLMQQ 774 (971)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----CCHHHHHHHHHHHTTCCC-----HHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 21110 01111222222222 221222235677778887666543 3478999999999877653 2 334
Q ss_pred HHHHHHHHHhHhhCC-------CCHHHHHHHHHhh
Q 041109 334 LALPLCTKITKCLNS-------CNSEVAERALYVW 361 (467)
Q Consensus 334 i~~~lf~~la~ci~S-------~h~qVAErAL~~w 361 (467)
+..+++..+-..+++ .+..|++..+.+.
T Consensus 775 ~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll 809 (971)
T 2x1g_F 775 LLREFIQHSFKLFESTPEQNFSNISDTMETFFGCL 809 (971)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCccCchHHHHHHHHH
Confidence 444434433333333 3566777665554
No 36
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=65.90 E-value=1.2e+02 Score=30.95 Aligned_cols=220 Identities=10% Similarity=0.093 Sum_probs=109.4
Q ss_pred HhcCCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHH-HHHHHhhhhhccCCccChHH--
Q 041109 158 VLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKA-MNDVFLQYNFETEKHCGIGE-- 234 (467)
Q Consensus 158 i~s~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~-i~n~f~~fi~e~~~~~GI~E-- 234 (467)
+.+-++...+..++..-|-.|+.++.|+|+.-|...-..|..|-+.....|..+... .-..+...+...........
T Consensus 128 ias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 333344444444555678889999999999999999999999876655556555432 23344555543332222222
Q ss_pred --HHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcC---------CCcHHHHHHHhhcc
Q 041109 235 --LLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE---------PALGGLVARGILKY 303 (467)
Q Consensus 235 --LLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd---------p~L~~~vi~~llk~ 303 (467)
+...+..+..|-..........-...+|..|..+..-.. ...-..++......+ ......++.. ++
T Consensus 208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v-~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L~- 284 (510)
T 3ul1_B 208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL-LG- 284 (510)
T ss_dssp HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH-HT-
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh-hc-
Confidence 334444444444333333333334455666666554432 122233333332222 2233333332 22
Q ss_pred CCCCCchhHhHHHHHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccc
Q 041109 304 WPVTNCRKEVLLIGELEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDV 377 (467)
Q Consensus 304 WP~tns~KevlFL~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i 377 (467)
..+..-+..-+.-+..+... +++.-..+. ......+..+++|++..|-+.|...+.| +.....+.+. .+
T Consensus 285 --~~~~~v~~~al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~--g~ 359 (510)
T 3ul1_B 285 --ATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH--GL 359 (510)
T ss_dssp --CSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT--TH
T ss_pred --CCChhhhhHHHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc--CC
Confidence 23333333444445554432 222222111 2244556677888888887777654433 3333333222 35
Q ss_pred hhhhhHHH
Q 041109 378 FPVIVEGM 385 (467)
Q Consensus 378 ~Pii~~~L 385 (467)
+|.++..+
T Consensus 360 i~~Lv~lL 367 (510)
T 3ul1_B 360 VPFLVGVL 367 (510)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=64.22 E-value=1.4e+02 Score=31.44 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhc--------------CCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 041109 276 RQLAYCVSQFVQK--------------EPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTK 341 (467)
Q Consensus 276 ~qL~~cv~qf~~k--------------dp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~ 341 (467)
.....|+..|.+. +|+.+..++..+++.+ ..++.-+...|.-+..+.-..+.. ...+-..
T Consensus 479 ~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-----~~~l~~~ 552 (618)
T 1w63_A 479 QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-----VNRIKKV 552 (618)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-----HHHHHHH
T ss_pred HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-----HHHHHHH
Confidence 4578888888752 3345566777777665 455666667777777776555422 3344555
Q ss_pred HhHhhCCCCHHHHHHHHHhhc
Q 041109 342 ITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 342 la~ci~S~h~qVAErAL~~w~ 362 (467)
+..|..|.+..|=+||..+|.
T Consensus 553 L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 553 VSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHH
Confidence 777889999999999998885
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=63.13 E-value=1.1e+02 Score=29.61 Aligned_cols=224 Identities=11% Similarity=0.114 Sum_probs=119.5
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCc
Q 041109 173 RFLTNLLSLFQSE-DLRERDSLKNIYHRIYAKFTF-YRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPL 250 (467)
Q Consensus 173 ~Fi~~Ll~lf~S~-DprER~~LktiLhrIY~kf~~-~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PL 250 (467)
..+..|+.++.++ |+.-|...-.+|..+...-.. .+.++....-..+.+.+... ...--...+..++.+..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~vr~~a~~~L~~l~~~~---- 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-FEDVQEQAVWALGNIAGDS---- 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTC----
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHccCC----
Confidence 6888899999999 899999999999988763322 23344444455566655432 2222334567777776643
Q ss_pred hHHHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcC-CC--------cHHHHHHHhhccCCCCCchhHhHHH
Q 041109 251 KEEHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKE-PA--------LGGLVARGILKYWPVTNCRKEVLLI 316 (467)
Q Consensus 251 Keeh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kd-p~--------L~~~vi~~llk~WP~tns~KevlFL 316 (467)
++.+..+ ...|+.+.+...-.....+-..++..++..+ |. ..+.+++ +++ ..+..-...-+
T Consensus 139 -~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~l~---~~~~~v~~~a~ 213 (450)
T 2jdq_A 139 -TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW-LLF---VSDTDVLADAC 213 (450)
T ss_dssp -HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH-HTT---CCCHHHHHHHH
T ss_pred -HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HHc---cCCHHHHHHHH
Confidence 2222222 3456666664333444566677777777544 32 2233332 222 12211111112
Q ss_pred HHHHHHhhcCChHHHHHHH-HHHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHHhh
Q 041109 317 GELEELVDSIDPAQYRRLA-LPLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKNLK 390 (467)
Q Consensus 317 ~el~~ile~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~~~ 390 (467)
.-+..+... .++....+. ..++..+..++.+++..|.+.|+....| +.....+.+ ..++|.+.. ...
T Consensus 214 ~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~----ll~ 286 (450)
T 2jdq_A 214 WALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSLLH----LLS 286 (450)
T ss_dssp HHHHHHTSS-SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHH----HTT
T ss_pred HHHHHHHCC-CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHHHH----HHc
Confidence 222222221 122222221 2356777778889999998888755432 222221111 124444443 332
Q ss_pred ccccHHHHHHHHHHHHHHHhcCHH
Q 041109 391 LHWSKSVKQLTENVKVMLEQMDPN 414 (467)
Q Consensus 391 ~HWn~~Vr~~a~~vl~~l~e~D~~ 414 (467)
+-+..+|..|..++.-+..-++.
T Consensus 287 -~~~~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 287 -SPKESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp -CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred -CCCHHHHHHHHHHHHHHHcCCHH
Confidence 34778888888888877764443
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=62.50 E-value=82 Score=27.75 Aligned_cols=224 Identities=14% Similarity=0.119 Sum_probs=117.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhhhccc-hHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHH
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFY-RSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEE 253 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~-R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKee 253 (467)
+..|+.++.++|+..|...-..|..+-...... +.++...+-..+.+++.... ..-....+..++.+..+- ++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~-----~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGP-----DE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCC-----hH
Confidence 567899999999999998888888876655433 33333345555666665432 222333455555554331 23
Q ss_pred HHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHH-----HHHhhccCCCCCchhHhHHHHHHHHHh
Q 041109 254 HKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLV-----ARGILKYWPVTNCRKEVLLIGELEELV 323 (467)
Q Consensus 254 h~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~v-----i~~llk~WP~tns~KevlFL~el~~il 323 (467)
.+..+ ...|+.+.+... ......-..++..+...++.....+ +..|++.=-..+..-...-+.-+..+.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33322 455666666544 2233444555555554444322211 111221111222222222333333333
Q ss_pred hcCChHHHHHH-HHHHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHHhhccccHHH
Q 041109 324 DSIDPAQYRRL-ALPLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSV 397 (467)
Q Consensus 324 e~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~V 397 (467)
.. +++....+ .......+..++.+++..|.+.|+..+.| +.....+.+ ..++|. |.+..+ +=+..+
T Consensus 157 ~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~----L~~ll~-~~~~~v 228 (252)
T 4hxt_A 157 SG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD--AGGVEV----LQKLLT-STDSEV 228 (252)
T ss_dssp TS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH--TTHHHH----HHHGGG-CSCHHH
T ss_pred cC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHH----HHHHHC-CCcHHH
Confidence 22 22221211 23367778888889999998888755432 332222222 123444 444332 447789
Q ss_pred HHHHHHHHHHHHhcCH
Q 041109 398 KQLTENVKVMLEQMDP 413 (467)
Q Consensus 398 r~~a~~vl~~l~e~D~ 413 (467)
+..|..++.-|...++
T Consensus 229 ~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 229 QKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999888876654
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=62.22 E-value=1.4e+02 Score=30.17 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhh
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYA 202 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~ 202 (467)
+..|+..+.|+|+..|...-..|..+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~ 39 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIAL 39 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHH
Confidence 5678888889999998887766666544
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=60.76 E-value=1.7e+02 Score=30.86 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=74.4
Q ss_pred HHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCC---Cc--hhHhHHHHHHHHHhhc---------
Q 041109 260 RVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVT---NC--RKEVLLIGELEELVDS--------- 325 (467)
Q Consensus 260 ~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~t---ns--~KevlFL~el~~ile~--------- 325 (467)
.+|+-+.+... .....+...++.+.+.++|.+-..++..|..+.... .+ ..-+..|+|..+.+..
T Consensus 425 ~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~ 503 (618)
T 1w63_A 425 DTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPI 503 (618)
T ss_dssp HHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhccccccccccc
Confidence 33444444443 233456778888899999999888888777666531 11 1233456666655532
Q ss_pred -CChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHH
Q 041109 326 -IDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENV 404 (467)
Q Consensus 326 -~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~v 404 (467)
..|.....+. ..+.+.. +.+..|=..++ +. +.++..... ..-+.+..-|.. ...+-|.+||+.|...
T Consensus 504 ~~~~~~~~~~l----~~~l~~~-~~~~~vr~~~l--ta---~~Kl~~~~~-~~~~~l~~~L~~-~~~~~d~evrdRA~~y 571 (618)
T 1w63_A 504 QVTEDEVLDIL----ESVLISN-MSTSVTRGYAL--TA---IMKLSTRFT-CTVNRIKKVVSI-YGSSIDVELQQRAVEY 571 (618)
T ss_dssp CCCHHHHHHHH----HHHHHST-TCCHHHHHHHH--HH---HHHHHTTCS-SCHHHHHHHHHH-HTTCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHH----HHHHhcc-CCCHHHHHHHH--HH---HHHHHHhCc-chHHHHHHHHHH-hcCCCCHHHHHHHHHH
Confidence 2333332222 1121111 22322211111 11 111222221 123444443444 3568899999999999
Q ss_pred HHHHHhcCHHHHH
Q 041109 405 KVMLEQMDPNLYS 417 (467)
Q Consensus 405 l~~l~e~D~~lf~ 417 (467)
++++.. ++.+-.
T Consensus 572 ~~ll~~-~~~~~~ 583 (618)
T 1w63_A 572 NALFKK-YDHMRS 583 (618)
T ss_dssp HHHHHT-TTTHHH
T ss_pred HHHHcC-cHHHHH
Confidence 999876 655433
No 42
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=60.15 E-value=1.4e+02 Score=34.41 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhcc----CCccChHHHHHHHHHHHh
Q 041109 169 YIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFET----EKHCGIGELLEIWGSIIN 244 (467)
Q Consensus 169 ~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~----~~~~GI~ELLeil~sIIn 244 (467)
-+|-.-+.+++..+.++|+.+|......|..+-..--.. - .....+... -++.| +.++...|+
T Consensus 24 ~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw---~------~~~~iL~~s~~~~vR~fA----a~~L~~~I~ 90 (1073)
T 3gjx_A 24 KLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAW---T------RVDTILEFSQNMNTKYYG----LQILENVIK 90 (1073)
T ss_dssp CCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHH---H------HHTCC---CCSHHHHHHH----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHH---H------HHHHHhcCCCCHHHHHHH----HHHHHHHHH
Confidence 357778888999999999999999998887754321111 0 011111111 01112 344444454
Q ss_pred ccCCCchHHHHHHHHHHhhhccCCc--------chhhhHHHHHHHHHHHHhc
Q 041109 245 GFTVPLKEEHKLFLIRVLIPLHKSK--------GMQAYHRQLAYCVSQFVQK 288 (467)
Q Consensus 245 gfa~PLKeeh~~fl~~vLlPLhk~~--------~~~~y~~qL~~cv~qf~~k 288 (467)
..-..+.++.+..++..|+.+...- .-..|-.+|+.++...+..
T Consensus 91 ~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 91 TRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 3323566788888888887776431 1134456777777766543
No 43
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=59.64 E-value=1.6e+02 Score=31.22 Aligned_cols=206 Identities=12% Similarity=0.179 Sum_probs=105.1
Q ss_pred HHHHhcC-CCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHH
Q 041109 177 NLLSLFQ-SEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHK 255 (467)
Q Consensus 177 ~Ll~lf~-S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~ 255 (467)
.++..+. ++|+.=|..-.++|..+-..- . + ..|-+.+..|+.+.+... ..++..-+|.+...|+ |-.+-+
T Consensus 372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~----N-v-~~Iv~eL~~yl~~~d~~~-~~~~v~~I~~la~k~~-~~~~~~- 442 (621)
T 2vgl_A 372 TVINALKTERDVSVRQRAVDLLYAMCDRS----N-A-QQIVAEMLSYLETADYSI-REEIVLKVAILAEKYA-VDYTWY- 442 (621)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHCCHH----H-H-HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHC-SSTHHH-
T ss_pred HHHHHhccCCCHhHHHHHHHHHHHHcChh----h-H-HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhcC-CcHHHH-
Confidence 3444455 666655555555554443221 0 1 233445555555443221 2344455555555554 222223
Q ss_pred HHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHh-----HHHHHHHHHhhcCC---
Q 041109 256 LFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEV-----LLIGELEELVDSID--- 327 (467)
Q Consensus 256 ~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~Kev-----lFL~el~~ile~~~--- 327 (467)
..+|+-|.+...- .+.++....+.+.+.++|.+-..++..++.+-......-.+ ..|+|..+.++..+
T Consensus 443 ---v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 443 ---VDTILNLIRIAGD-YVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp ---HHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred ---HHHHHHHHHhhcc-cchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCC
Confidence 3444555544321 24456777888888999998888887777665544333222 56788877776432
Q ss_pred hHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhhc--cccHHHHHHHHHHH
Q 041109 328 PAQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKL--HWSKSVKQLTENVK 405 (467)
Q Consensus 328 ~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~--HWn~~Vr~~a~~vl 405 (467)
|.+ +++.+...+...+..|=..+|... +++..... .+.+.+..-| +.... +-|.+||+.|...+
T Consensus 519 p~~-------~l~~l~~~~~~~~~~v~~~~Lta~-----~Kl~~~~p-~~~~~i~~~l-~~~~~~~~~d~evrdRA~~y~ 584 (621)
T 2vgl_A 519 PLI-------QFNLLHSKFHLCSVPTRALLLSTY-----IKFVNLFP-EVKATIQDVL-RSDSQLKNADVELQQRAVEYL 584 (621)
T ss_dssp HHH-------HHHHHHHHHTTSCHHHHHHHHHHH-----HHHHHHCG-GGHHHHHHHH-SSHHHHSCSSHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHhccCCHHHHHHHHHHH-----HHHHHHCh-HHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHH
Confidence 322 233333333444444433333211 11222221 1233333333 33344 78889999999888
Q ss_pred HHHH
Q 041109 406 VMLE 409 (467)
Q Consensus 406 ~~l~ 409 (467)
+++.
T Consensus 585 ~Ll~ 588 (621)
T 2vgl_A 585 RLST 588 (621)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8875
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=55.53 E-value=2e+02 Score=30.01 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhhhhhccCCccChHHHHHHHHHHHh
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMR-KAMNDVFLQYNFETEKHCGIGELLEIWGSIIN 244 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Ir-k~i~n~f~~fi~e~~~~~GI~ELLeil~sIIn 244 (467)
+..+..++.++||.=|...-..+.+||.+.... +. ..+-+.+...+. +.++...+..+..++.|..
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHh
Confidence 334555566666666666666666666654332 11 122344444443 2333334444555555443
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=55.09 E-value=43 Score=30.39 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhC-CCCHHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhh
Q 041109 312 EVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLN-SCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLK 390 (467)
Q Consensus 312 evlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~-S~h~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~ 390 (467)
...-+..|..+++..+.-. ......++..+.+++. +.|.+|...|+.... .+...+...-....+.++|+|.+...
T Consensus 32 R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~--~la~~l~~~~~~~~~~ilp~ll~~l~ 108 (242)
T 2qk2_A 32 RKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDSNVVLVAMAGKCLA--LLAKGLAKRFSNYASACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 3444566666665422100 0112345666667774 789998888876653 22223332223345556666666544
Q ss_pred ccccHHHHHHHHHHHHHHHhcC
Q 041109 391 LHWSKSVKQLTENVKVMLEQMD 412 (467)
Q Consensus 391 ~HWn~~Vr~~a~~vl~~l~e~D 412 (467)
. =+..||..+..++..+.+.-
T Consensus 109 d-~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 109 E-KKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp C-CCHHHHHHHHHHHHHHHTTS
T ss_pred C-CCHHHHHHHHHHHHHHHHcC
Confidence 3 26788888888888877643
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=53.33 E-value=2.2e+02 Score=31.95 Aligned_cols=89 Identities=9% Similarity=0.158 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHhcCCC-------cHHHHHHHhhccCCC-CCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHh
Q 041109 272 QAYHRQLAYCVSQFVQKEPA-------LGGLVARGILKYWPV-TNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKIT 343 (467)
Q Consensus 272 ~~y~~qL~~cv~qf~~kdp~-------L~~~vi~~llk~WP~-tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la 343 (467)
....+.+...+..|.++.+. +.+.++..++.-.-. ..+.++..+|+.+..++..++ +.+......++..+.
T Consensus 725 ~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~-~~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 725 RTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVF 803 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHG-GGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHH
Confidence 34455666677777766542 123344444433211 123345778888999887765 234444455555555
Q ss_pred Hhh----C---CCCHHHHHHHHHhh
Q 041109 344 KCL----N---SCNSEVAERALYVW 361 (467)
Q Consensus 344 ~ci----~---S~h~qVAErAL~~w 361 (467)
.|. + +++..|.+..+.+.
T Consensus 804 ~~~~~~i~~~~~~~pd~~~~~f~ll 828 (1049)
T 3m1i_C 804 ECTLDMINKDFTEYPEHRVEFYKLL 828 (1049)
T ss_dssp HHHHHHHSSCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhCHHHHHHHHHHH
Confidence 553 2 35677777665554
No 47
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=52.90 E-value=27 Score=30.47 Aligned_cols=89 Identities=8% Similarity=0.145 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHhHhhCCCCHH
Q 041109 276 RQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDP---AQYRRLALPLCTKITKCLNSCNSE 352 (467)
Q Consensus 276 ~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~---~~f~~i~~~lf~~la~ci~S~h~q 352 (467)
++...-++.++..+..-+..++..+.++--++.+.+.+.+|..+.+|+..... ..|.+.+.++|...-.+++...-+
T Consensus 24 k~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~ 103 (144)
T 1sz9_A 24 RPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRT 103 (144)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34445567777777778888888888777789999999999999999987653 357777778888877776554455
Q ss_pred HHHHHHHhhcch
Q 041109 353 VAERALYVWNNE 364 (467)
Q Consensus 353 VAErAL~~w~N~ 364 (467)
-..|-+..|...
T Consensus 104 k~~rL~~~W~~~ 115 (144)
T 1sz9_A 104 KLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHHhCc
Confidence 556677888754
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=50.12 E-value=2.9e+02 Score=30.36 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=48.7
Q ss_pred hHhHHHHHHHHHhhcCC------------hHHHHHHHHHHHHHHhHhhCC--CCHHHHHHHHHhhcchhHHHHHhhcccc
Q 041109 311 KEVLLIGELEELVDSID------------PAQYRRLALPLCTKITKCLNS--CNSEVAERALYVWNNEQFVRMVSSSLED 376 (467)
Q Consensus 311 KevlFL~el~~ile~~~------------~~~f~~i~~~lf~~la~ci~S--~h~qVAErAL~~w~N~~~~~li~~~~~~ 376 (467)
+-+-.|+.|..++..+. ++.+..+...++..+...+.. .+..|.|+|+.+|.+ ++..+.+....
T Consensus 653 ~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~p 730 (971)
T 2x1g_F 653 RTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKH--AITNLRSSFQP 730 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHHHC--CT
T ss_pred HHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH--HHHhhhhhccc
Confidence 34455666666655432 122344445555555555433 367899999988864 23333333344
Q ss_pred chhhhhHHHHHHhhccccHHHHHHHHHHHHHH
Q 041109 377 VFPVIVEGMEKNLKLHWSKSVKQLTENVKVML 408 (467)
Q Consensus 377 i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l 408 (467)
.+|.+++.|....+++=...+-.++..+...+
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 731 MLQDLCLFIVASFQTRCCAPTLEISKTAIVMF 762 (971)
T ss_dssp HHHHHHHHHHHHCC--CCHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 57777777765544432234444444444433
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=48.50 E-value=2.3e+02 Score=30.02 Aligned_cols=169 Identities=11% Similarity=0.136 Sum_probs=97.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchHHHH
Q 041109 176 TNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHK 255 (467)
Q Consensus 176 ~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~ 255 (467)
..|.+-+.+.|..=|..+..-++++-.||...-.|... .+.+++.....+ -..|....+..++... ..+++
T Consensus 407 ~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~----~Ll~ll~~~~~~-v~~ev~~~l~~ii~~~-~~~~~--- 477 (621)
T 2vgl_A 407 AEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVD----TILNLIRIAGDY-VSEEVWYRVIQIVINR-DDVQG--- 477 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHH----HHHHHHHHHGGG-SCSHHHHHHHHHHGGG-CSCHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH----HHHHHHHhhccc-chHHHHHHHHHHHhCC-hhHHH---
Confidence 33444455556555555555555555566554444433 333433333233 3456666666666543 12222
Q ss_pred HHHHHHhhhccCCcchhhhHHHHH----HHHHHHHh---cCCCcH-HHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCC
Q 041109 256 LFLIRVLIPLHKSKGMQAYHRQLA----YCVSQFVQ---KEPALG-GLVARGILKYWPVTNCRKEVLLIGELEELVDSID 327 (467)
Q Consensus 256 ~fl~~vLlPLhk~~~~~~y~~qL~----~cv~qf~~---kdp~L~-~~vi~~llk~WP~tns~KevlFL~el~~ile~~~ 327 (467)
+-.+.++-....+. .+..+. .|+..|.+ ..+..+ ..+++.+.+.++..++.-+...|.-+..+.-..+
T Consensus 478 -~~~~~l~~~l~~~~---~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 478 -YAAKTVFEALQAPA---CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp -HHHHHHHHHHTSSS---CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHcCcc---chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh
Confidence 22222333333332 233455 88888865 334343 4788999988888888888888888888765443
Q ss_pred hHHHHHHHHHHHHHHhHhhC--CCCHHHHHHHHHhhc
Q 041109 328 PAQYRRLALPLCTKITKCLN--SCNSEVAERALYVWN 362 (467)
Q Consensus 328 ~~~f~~i~~~lf~~la~ci~--S~h~qVAErAL~~w~ 362 (467)
+ +...+-..+..|.. |.+..|=+||..+|.
T Consensus 554 -~----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 554 -E----VKATIQDVLRSDSQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp -G----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 2 22334455566666 999999999998884
No 50
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=48.01 E-value=2.3e+02 Score=28.45 Aligned_cols=225 Identities=7% Similarity=0.020 Sum_probs=109.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 173 RFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 173 ~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
.++-.+..++++++++-|......|..+-..+ +... ....+...|...+.+. ...--...++.++.+...+.. +
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~-~~~~-~~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~---~ 397 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDN-TIEHLLPLFLAQLKDE-CPEVRLNIISNLDCVNEVIGI---R 397 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHH-HHHHTHHHHHHHHTCS-CHHHHHHHHTTCHHHHHHSCH---H
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-hHhH-HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHhcCH---H
Confidence 34455666778888888877776666643322 1111 1122333444443221 111111233444444443321 1
Q ss_pred HHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCC--CcHHHHHHHhhccCCCCCchhH--hHHHHHHHHHhhcCCh
Q 041109 253 EHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEP--ALGGLVARGILKYWPVTNCRKE--VLLIGELEELVDSIDP 328 (467)
Q Consensus 253 eh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp--~L~~~vi~~llk~WP~tns~Ke--vlFL~el~~ile~~~~ 328 (467)
.+...+.-.|..+.+.+.... ......++..+.+.-+ .+...++..+++.- .++..+ ..-+.-+..++..+++
T Consensus 398 ~~~~~~lp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 398 QLSQSLLPAIVELAEDAKWRV-RLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL--VDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG--GCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhCc
Confidence 222333344444555444322 3344455555443211 11122333333221 222222 3455666677766666
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHH
Q 041109 329 AQYRRLALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVML 408 (467)
Q Consensus 329 ~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l 408 (467)
+.+ ...++..+..+..+++.+|-..|+..+.. +...+.. ..+.+.++|.|.+.. +.-+..||..+..++..+
T Consensus 475 ~~~---~~~llp~l~~~~~~~~~~~R~~a~~~l~~--l~~~~~~--~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 475 EWA---HATIIPKVLAMSGDPNYLHRMTTLFCINV--LSEVCGQ--DITTKHMLPTVLRMA-GDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHH---HHHTHHHHHHTTTCSCHHHHHHHHHHHHH--HHHHHHH--HHHHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHHhhCCCHHHHHHHHHHHHH--HHHhcCH--HHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHHH
Confidence 543 33445556677888999887777755532 2222221 224566667676543 345788999888888777
Q ss_pred Hh-cCHH
Q 041109 409 EQ-MDPN 414 (467)
Q Consensus 409 ~e-~D~~ 414 (467)
.. +++.
T Consensus 547 ~~~~~~~ 553 (588)
T 1b3u_A 547 GPILDNS 553 (588)
T ss_dssp GGGSCHH
T ss_pred HHHhchh
Confidence 64 3443
No 51
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=46.99 E-value=31 Score=29.17 Aligned_cols=82 Identities=10% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHhHhh-CCCCHHHHHHH
Q 041109 282 VSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSI---DPAQYRRLALPLCTKITKCL-NSCNSEVAERA 357 (467)
Q Consensus 282 v~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~---~~~~f~~i~~~lf~~la~ci-~S~h~qVAErA 357 (467)
+.+++-.+..-+..++..+.++--.+.+.+.+.+|..+.+|+... ....|.+...+.+..+-..+ ...+-+-..+-
T Consensus 27 ~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~l 106 (132)
T 4flb_A 27 LSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERI 106 (132)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345555666667777777777777788999999999999999654 22344444433333333333 44566677888
Q ss_pred HHhhcc
Q 041109 358 LYVWNN 363 (467)
Q Consensus 358 L~~w~N 363 (467)
+.+|..
T Consensus 107 l~iW~~ 112 (132)
T 4flb_A 107 FKIWED 112 (132)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 899975
No 52
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=42.40 E-value=2.9e+02 Score=31.40 Aligned_cols=224 Identities=11% Similarity=0.082 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCC
Q 041109 169 YIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTV 248 (467)
Q Consensus 169 ~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~ 248 (467)
-+|-.-+.+++..+.++++.+|......|..+...--.... . ..++..=-...-++.| +.++...|+..-.
T Consensus 12 ~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~-~----~~iL~~s~~~~vR~fa----a~~Lk~~I~~~W~ 82 (1023)
T 4hat_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQK-A----DQILQFSTNPQSKFIA----LSILDKLITRKWK 82 (1023)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGG-H----HHHHHHCCCHHHHHHH----HHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHH-H----HHHhcCCCCHHHHHHH----HHHHHHHHHhhhh
Confidence 36667777888888788887888888888886654222110 0 1111100000011122 3334444443223
Q ss_pred CchHHHHHHHHHHhhhccCCcc--------hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHhhccCCCCCchhHhHHHHHH
Q 041109 249 PLKEEHKLFLIRVLIPLHKSKG--------MQAYHRQLAYCVSQFVQKE-PALGGLVARGILKYWPVTNCRKEVLLIGEL 319 (467)
Q Consensus 249 PLKeeh~~fl~~vLlPLhk~~~--------~~~y~~qL~~cv~qf~~kd-p~L~~~vi~~llk~WP~tns~KevlFL~el 319 (467)
.+.++.+..++..|+.+...-. -...-.+|+.++...+..+ |.-=+..+..++..|-. +...-..+|..+
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 5667888888888888764311 1223345888887777655 22222333344444432 222233333333
Q ss_pred HH----Hhhc----CCh-------HHHHHHHHHHHHHHhHhhCC-CCHHHHHHHHH---hhcchhHHHHHhhccccchhh
Q 041109 320 EE----LVDS----IDP-------AQYRRLALPLCTKITKCLNS-CNSEVAERALY---VWNNEQFVRMVSSSLEDVFPV 380 (467)
Q Consensus 320 ~~----ile~----~~~-------~~f~~i~~~lf~~la~ci~S-~h~qVAErAL~---~w~N~~~~~li~~~~~~i~Pi 380 (467)
.. +.+. +.. +.+......++..+..++++ .+..++..+|. -|-+---++.+.. ..+++.
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~--~~ll~~ 239 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYE--TNILEL 239 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHS--SSHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcc--hhHHHH
Confidence 33 3221 121 12344456677777777754 45566665554 3433211223322 346666
Q ss_pred hh-HHHHHHhhccccHHHHHHHHHHHHHHHhc
Q 041109 381 IV-EGMEKNLKLHWSKSVKQLTENVKVMLEQM 411 (467)
Q Consensus 381 i~-~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~ 411 (467)
++ ..| . +...+..|..++..+...
T Consensus 240 l~~~~L-~------~~~~r~~A~ecL~eIv~~ 264 (1023)
T 4hat_C 240 LSTKFM-T------SPDTRAITLKCLTEVSNL 264 (1023)
T ss_dssp HHTHHH-H------SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHc-C------CHHHHHHHHHHHHHHHcc
Confidence 66 433 1 577899999999988764
No 53
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=41.94 E-value=3.9e+02 Score=29.48 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHH
Q 041109 172 HRFLTNLLSLFQSE-----DLRERDSLKNIYHRIYA----KFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSI 242 (467)
Q Consensus 172 ~~Fi~~Ll~lf~S~-----DprER~~LktiLhrIY~----kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sI 242 (467)
...+.+|+.+++.. +..|.+.+-..+.++-. .+.++=.-+-..+.+.+.....+.+...=...++|.+|++
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 35666777777764 12255667666666543 2333212222223333333222222222234588999999
Q ss_pred Hhc
Q 041109 243 ING 245 (467)
Q Consensus 243 Ing 245 (467)
+..
T Consensus 627 ~~~ 629 (960)
T 1wa5_C 627 LNY 629 (960)
T ss_dssp HHT
T ss_pred Hhc
Confidence 887
No 54
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=41.48 E-value=1e+02 Score=29.37 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHH
Q 041109 277 QLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAER 356 (467)
Q Consensus 277 qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAEr 356 (467)
+|.++-...+.+||.+.+.++++++-+=.-.+..=.-...+.|++++.. .+ .+...+..-|...+...+..|..+
T Consensus 35 ~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~----~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 35 LLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KV----ELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CG----GGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4555555567889999999999999863222222233445555565522 12 233444444444455666777777
Q ss_pred HHHhhcc
Q 041109 357 ALYVWNN 363 (467)
Q Consensus 357 AL~~w~N 363 (467)
|+....+
T Consensus 110 ~I~~~~~ 116 (257)
T 3gs3_A 110 VIQACGS 116 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 55
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=41.26 E-value=4e+02 Score=29.40 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHh
Q 041109 249 PLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQK-----EPALGGLVARGILKYWPVTNCRKEVLLIGELEELV 323 (467)
Q Consensus 249 PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~k-----dp~L~~~vi~~llk~WP~tns~KevlFL~el~~il 323 (467)
.+.++.+..++..|+....... ..-..+++.|+...... .|.|...++..+- .++.......|.-+.+|+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----NDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----SSCTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Confidence 4667888888888888766544 55567899998887754 3666666655442 234444455666666666
Q ss_pred hc
Q 041109 324 DS 325 (467)
Q Consensus 324 e~ 325 (467)
+.
T Consensus 152 ~~ 153 (960)
T 1wa5_C 152 KR 153 (960)
T ss_dssp GG
T ss_pred HH
Confidence 63
No 56
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=39.00 E-value=3.1e+02 Score=27.48 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHhhhhccchHHHH-HHHHHHHhhhhhccCCccChHHHHHHHHHHHhcc
Q 041109 169 YIDHRFLTNLLSLFQSED-LRERDSLKNIYHRIYAKFTFYRSFMR-KAMNDVFLQYNFETEKHCGIGELLEIWGSIINGF 246 (467)
Q Consensus 169 ~id~~Fi~~Ll~lf~S~D-prER~~LktiLhrIY~kf~~~R~~Ir-k~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngf 246 (467)
.+....+..|+.++.++| +.-|...-..|..|-......|..+. ...-..+...+... ...-....++.++.|..+-
T Consensus 113 ~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp HHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCC
Confidence 344466788999999987 88898888888888765444443333 33445566666542 2222233466777765431
Q ss_pred CCCchHHHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHH-------HHHHHhhccCCCCCchhHhH
Q 041109 247 TVPLKEEHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGG-------LVARGILKYWPVTNCRKEVL 314 (467)
Q Consensus 247 a~PLKeeh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~-------~vi~~llk~WP~tns~Kevl 314 (467)
++.+..+ ...|+.+.....-.........++..++...|.... ..+-.+++. .+..-...
T Consensus 192 -----~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~ 263 (528)
T 4b8j_A 192 -----PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS---NDEEVLTD 263 (528)
T ss_dssp -----HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC---CCHHHHHH
T ss_pred -----hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC---CCHHHHHH
Confidence 2222322 234555553322233345666777777765443221 222222321 22222222
Q ss_pred HHHHHHHHhhcCChHHHHHHHH-HHHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHH
Q 041109 315 LIGELEELVDSIDPAQYRRLAL-PLCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKN 388 (467)
Q Consensus 315 FL~el~~ile~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~ 388 (467)
-+.-|..+... +++....+.. .+...|..++.+++..|.+.|+....| +.....+.+ ..++|.+...|.
T Consensus 264 a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~-- 338 (528)
T 4b8j_A 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID--HQALPCLLSLLT-- 338 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHHH--
T ss_pred HHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH--hhhHHHHHHHHc--
Confidence 33333443322 2333322222 367788888999999999888866533 222222222 235565555442
Q ss_pred hhccc-cHHHHHHHHHHHHHHHhcCHH
Q 041109 389 LKLHW-SKSVKQLTENVKVMLEQMDPN 414 (467)
Q Consensus 389 ~~~HW-n~~Vr~~a~~vl~~l~e~D~~ 414 (467)
|= +..|+..|..++.-+..-++.
T Consensus 339 ---~~~~~~v~~~A~~~L~nl~~~~~~ 362 (528)
T 4b8j_A 339 ---QNLKKSIKKEACWTISNITAGNKD 362 (528)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHTSCHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHCCCHH
Confidence 22 677888888887777665554
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=34.29 E-value=3.9e+02 Score=27.17 Aligned_cols=227 Identities=14% Similarity=0.126 Sum_probs=122.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYA--KFTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~--kf~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
+..++..+.|+|+.++-..-.-++++-. +.......|...+-..|.+++.......-..+..++|+.|-.|- .
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-----~ 152 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-----S 152 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-----H
Confidence 4567888899999988776666666543 23344556666666778888866655555567788888888774 3
Q ss_pred HHHHHH-----HHHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHHH-----HHhhccCCCCCchh-HhHHH----H
Q 041109 253 EHKLFL-----IRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLVA-----RGILKYWPVTNCRK-EVLLI----G 317 (467)
Q Consensus 253 eh~~fl-----~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~vi-----~~llk~WP~tns~K-evlFL----~ 317 (467)
++..-+ ...|+-|.+++.... ..+-+.++......+|..-..++ ..|+..--..+... ...++ .
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v-~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHI-SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHH-HHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 444333 245666777766543 33444455545444444333332 22222221111111 11222 2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc-----chhHHHHHhhccccchhhhhHHHHHHhhcc
Q 041109 318 ELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN-----NEQFVRMVSSSLEDVFPVIVEGMEKNLKLH 392 (467)
Q Consensus 318 el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~-----N~~~~~li~~~~~~i~Pii~~~L~~~~~~H 392 (467)
-+..+...-++..-......+...|.+++.|++..|-..|+..+. ++.....+.. ..++|.++.-| .|
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~--~g~i~~Lv~lL-----~~ 304 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLL-----GA 304 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT--TTCHHHHHHHH-----TC
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh--ccchHHHHHHh-----cC
Confidence 233333222221111223455667788889999988777653321 1222333322 22455555433 24
Q ss_pred ccHHHHHHHHHHHHHHHhcCHH
Q 041109 393 WSKSVKQLTENVKVMLEQMDPN 414 (467)
Q Consensus 393 Wn~~Vr~~a~~vl~~l~e~D~~ 414 (467)
=+..++..+..++.-+...++.
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~ 326 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDE 326 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHH
T ss_pred CChhHHHHHHHHHHHHHccchH
Confidence 4677777777777666555543
No 58
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=33.79 E-value=5.8e+02 Score=29.02 Aligned_cols=260 Identities=14% Similarity=0.110 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCCchhhhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhhccchHHHHHHHHH--------HHh
Q 041109 149 IVYDILLRLVLHVDPKTLRDYIDHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKFTFYRSFMRKAMND--------VFL 220 (467)
Q Consensus 149 lVY~ill~fi~s~d~~~~k~~id~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf~~~R~~Irk~i~n--------~f~ 220 (467)
-+.+.+..+....+... +.-- ..-+.+|+.+++.-|..+ |..++..++.+ ...|.|++.++.. .+.
T Consensus 289 ~~~e~lk~L~~~~~~~v-~~~~-~~~f~~Lv~~lR~~~~e~---L~~l~~~~~~~-~~~r~~~lDal~~aGT~~a~~~i~ 362 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSV-HEDA-PAKFLRLTAFLRNVDAGV---LQSIWHKLHQQ-KDYRRWILDAVPAMATSEALLFLK 362 (1056)
T ss_dssp HHHHHHHHHHHHCSSSC-CTTH-HHHHHHHHHHHTTSCHHH---HHHHHHHHTTS-HHHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHhcccccc-Ccch-HHHHHHHHHHHhcCCHHH---HHHHHHHHhcc-HHHHHHHHHHhHhcCCHHHHHHHH
Confidence 45566666665422110 0000 123456888888777666 55666666653 4456777666653 222
Q ss_pred hhhhccCCccChHHHHHHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchh-------hhHHHHHHHHHHHHhcCCC--
Q 041109 221 QYNFETEKHCGIGELLEIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQ-------AYHRQLAYCVSQFVQKEPA-- 291 (467)
Q Consensus 221 ~fi~e~~~~~GI~ELLeil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~-------~y~~qL~~cv~qf~~kdp~-- 291 (467)
+++.+ ..-. ..|.++.+....+ ...|-.+-. +.+.+|.+.+... ..--.+...|..+|..++.
T Consensus 363 ~~i~~-~~l~-~~ea~~~l~~~~~-~~~Pt~e~l-----~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~ 434 (1056)
T 1lsh_A 363 RTLAS-EQLT-SAEATQIVASTLS-NQQATRESL-----SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP 434 (1056)
T ss_dssp HHHHT-TCSC-HHHHHHHHHHHHH-TCCCCHHHH-----HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHc-CCCC-HHHHHHHHHHhhc-cCCCCHHHH-----HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 33322 2222 2344444444332 224433222 2334454443211 1122455667777766432
Q ss_pred --cHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhC-------CCCHHHHHHHHHhhc
Q 041109 292 --LGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLN-------SCNSEVAERALYVWN 362 (467)
Q Consensus 292 --L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~-------S~h~qVAErAL~~w~ 362 (467)
+...+.+.+..-=-..+..+.+++|.-|+.+=- | ...+.|-+|+. +....|--+|+.-+.
T Consensus 435 ~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~---p--------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr 503 (1056)
T 1lsh_A 435 DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ---P--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALR 503 (1056)
T ss_dssp GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---G--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC---h--------hHHHHHHHhhcCccccccccchHHHHHHHHHHH
Confidence 233333333322223344455555555555421 0 12233444442 334455445544332
Q ss_pred chhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109 363 NEQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDP--NLYSKCLEATEIRESAARQEEMKRKEK 440 (467)
Q Consensus 363 N~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~--~lf~~~~~~~~~~~~~~~~~~~~r~~~ 440 (467)
+ +.....+.+-+++++ ++.+. .=+.+||-+|+.+| |+.+| .+.....+....+. ..+.+.=.
T Consensus 504 ~-----~~~~~p~~v~~il~~-i~~n~--~e~~EvRiaA~~~L---m~t~P~~~~l~~ia~~l~~E~-----~~QV~sfv 567 (1056)
T 1lsh_A 504 N-----IAKRDPRKVQEIVLP-IFLNV--AIKSELRIRSCIVF---FESKPSVALVSMVAVRLRREP-----NLQVASFV 567 (1056)
T ss_dssp T-----GGGTCHHHHHHHHHH-HHHCT--TSCHHHHHHHHHHH---HHTCCCHHHHHHHHHHHTTCS-----CHHHHHHH
T ss_pred H-----hhhhchHHHHHHHHH-HhcCC--CCChHHHHHHHHHH---HHHCcCHHHHHHHHHHHhhCc-----hHHHHHHH
Confidence 2 112334456666666 44432 34788888877664 66554 45556555443221 23344455
Q ss_pred HHHHHHHHH
Q 041109 441 WRRIETLAA 449 (467)
Q Consensus 441 W~~i~~~A~ 449 (467)
|..|...|+
T Consensus 568 ~S~l~sla~ 576 (1056)
T 1lsh_A 568 YSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 555555553
No 59
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=33.42 E-value=2.9e+02 Score=31.93 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHHhcCCC--ChHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHhhhhhccC----CccChHHHHHHHHHHHhccCC
Q 041109 175 LTNLLSLFQSE--DLRERDSLKNIYHRIYAKFTFYRSFMRKAMNDVFLQYNFETE----KHCGIGELLEIWGSIINGFTV 248 (467)
Q Consensus 175 i~~Ll~lf~S~--DprER~~LktiLhrIY~kf~~~R~~Irk~i~n~f~~fi~e~~----~~~GI~ELLeil~sIIngfa~ 248 (467)
+.+++..+.++ |+..|......|..+...--.. - ....++ ..... ++.| +.++...|+..-.
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~---~--~~~~~L---~~~s~~~~vR~~A----~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPIC---V--PCGLRL---AEKTQVAIVRHFG----LQILEHVVKFRWN 80 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTH---H--HHHHHH---TSTTSCHHHHHHH----HHHHHHHHHHSGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHH---H--HHHHHH---HccCCCHHHHHHH----HHHHHHHHHHhcc
Confidence 44555555555 7777888888887765432111 0 011111 10110 1111 2233334443223
Q ss_pred CchHHHHHHHHHHhhhccCCc------chhhhHHHHHHHHHHHHhc-----CCCcHHHHHHH
Q 041109 249 PLKEEHKLFLIRVLIPLHKSK------GMQAYHRQLAYCVSQFVQK-----EPALGGLVARG 299 (467)
Q Consensus 249 PLKeeh~~fl~~vLlPLhk~~------~~~~y~~qL~~cv~qf~~k-----dp~L~~~vi~~ 299 (467)
.+.++.+..++..|+.+.... .-.....+++.++..++.. .|++...++..
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~ 142 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTL 142 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 466788888888888876532 1244567888888887654 45555554433
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=32.92 E-value=6e+02 Score=28.96 Aligned_cols=176 Identities=11% Similarity=0.126 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcc--CCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHHHhcCCC-cHHHHHHHhhccCCCC-C
Q 041109 233 GELLEIWGSIINGF--TVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPA-LGGLVARGILKYWPVT-N 308 (467)
Q Consensus 233 ~ELLeil~sIIngf--a~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~-L~~~vi~~llk~WP~t-n 308 (467)
...+..++.|..-+ +.|. |-+..-+...++-++..+.-. -...-.+.+..++..-|. -...++..|+.+-..+ .
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~~~-v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~k 147 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKDKE-IQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNK 147 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSSHH-HHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccc
Confidence 55666777777544 3455 222222234445555554432 233444455555544333 3445555555544322 2
Q ss_pred chhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHH-------HhhcchhHHHHH----h--hc--
Q 041109 309 CRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERAL-------YVWNNEQFVRMV----S--SS-- 373 (467)
Q Consensus 309 s~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL-------~~w~N~~~~~li----~--~~-- 373 (467)
=+-.+--|.-++.+.+.. |+++...++.+...+..|+-...-.|+.+|. .+..|..+...| . .+
T Consensus 148 w~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 148 WQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh
Confidence 345678888888888777 7889888899999999999998888888754 344554332211 1 00
Q ss_pred -------------------------------------------------------------cccchhhhhHHHHHHhhcc
Q 041109 374 -------------------------------------------------------------LEDVFPVIVEGMEKNLKLH 392 (467)
Q Consensus 374 -------------------------------------------------------------~~~i~Pii~~~L~~~~~~H 392 (467)
...++|.++|.|.++..++
T Consensus 227 ~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~ 306 (986)
T 2iw3_A 227 EVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI 306 (986)
T ss_dssp HHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC
T ss_pred hhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc
Confidence 1237899999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 041109 393 WSKSVKQLTENVKVMLEQM 411 (467)
Q Consensus 393 Wn~~Vr~~a~~vl~~l~e~ 411 (467)
=++.+|..|..+++.|...
T Consensus 307 ~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 307 ADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999654
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=32.83 E-value=3.4e+02 Score=26.10 Aligned_cols=179 Identities=17% Similarity=0.098 Sum_probs=104.1
Q ss_pred CHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHhhhhhccCCcc-Ch-HHHHHHHHHHHhccC
Q 041109 171 DHRFLTNLLSLFQSEDLRERDSLKNIYHRIYAKF-TFYRSFMRKAMNDVFLQYNFETEKHC-GI-GELLEIWGSIINGFT 247 (467)
Q Consensus 171 d~~Fi~~Ll~lf~S~DprER~~LktiLhrIY~kf-~~~R~~Irk~i~n~f~~fi~e~~~~~-GI-~ELLeil~sIIngfa 247 (467)
+..-+.-|+++++..|+.=+..---+|-.+..-- -..|. ..+.+.|-+++.-....+ +| --.++.++.++-|
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~---~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~-- 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM---MVLERHLDVFINALSQENEKVTIKALRALGYLVKD-- 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH---HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT--
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH---HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--
Confidence 4556778999999999987776666665554432 11122 234445555553332111 22 2358899999998
Q ss_pred CCchHHHHHHHHHHhhhccCCcc--hhhhHHHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhc
Q 041109 248 VPLKEEHKLFLIRVLIPLHKSKG--MQAYHRQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDS 325 (467)
Q Consensus 248 ~PLKeeh~~fl~~vLlPLhk~~~--~~~y~~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~ 325 (467)
.|+.++.-.-+.+++.-+.+.+. +..|-.....-+ +=-+++..++..+.+.=-..|..=+.+=|..+.+|...
T Consensus 106 vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 106 VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 68887777777777777777442 223322222211 22223444444444444444455555555555555443
Q ss_pred CChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc
Q 041109 326 IDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN 362 (467)
Q Consensus 326 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~ 362 (467)
-++. .+...+|.-|...++|.+.-+.|+||....
T Consensus 181 S~D~---~i~~~I~~eI~elL~~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 181 SADS---GHLTLILDEIPSLLQNDNEFIVELALDVLE 214 (265)
T ss_dssp CSSC---CCGGGTTTTHHHHHTCSCHHHHHHHHHHHH
T ss_pred cCCH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3221 234567888889999999999999997763
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=31.82 E-value=3.3e+02 Score=25.56 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHH
Q 041109 276 RQLAYCVSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAE 355 (467)
Q Consensus 276 ~qL~~cv~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAE 355 (467)
+.+..-+.+...-.|.++..++--+.--+-.++++-.+=+=.-+++|+..-| .++..+|+-|+-.++|++--=--
T Consensus 88 qeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~Dkl 162 (253)
T 2db0_A 88 QEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKL 162 (253)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHHHHH
T ss_pred HHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChHHHH
Confidence 4555666777888999999999999988888888888888888888875443 35566788888888999943333
Q ss_pred HHHHhhcchhHHHHHhhcc-ccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 041109 356 RALYVWNNEQFVRMVSSSL-EDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMDPNLYSKCLE 421 (467)
Q Consensus 356 rAL~~w~N~~~~~li~~~~-~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D~~lf~~~~~ 421 (467)
.||+|.. -+..|. +++.|. .|-|. +.-.-=|.-||..|-..|--+-+.+|+ +.+...
T Consensus 163 ~aLnFi~------alGen~~~yv~Pf-LprL~-aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~ 220 (253)
T 2db0_A 163 TALNFIE------AMGENSFKYVNPF-LPRII-NLLHDGDEIVRASAVEALVHLATLNDK-LRKVVI 220 (253)
T ss_dssp HHHHHHH------TCCTTTHHHHGGG-HHHHH-GGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHH
T ss_pred HHHHHHH------HHhccCccccCcc-hHHHH-HHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHH
Confidence 4666543 333333 333332 23332 233345899999999999999999998 444433
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=31.51 E-value=6e+02 Score=28.56 Aligned_cols=109 Identities=13% Similarity=0.305 Sum_probs=64.4
Q ss_pred HHHHHHHHhHhhCCCCHHHHHHHHHhhcchhHHHHHhhc---------cccchhhhhHHHHHHhhc----cccH------
Q 041109 335 ALPLCTKITKCLNSCNSEVAERALYVWNNEQFVRMVSSS---------LEDVFPVIVEGMEKNLKL----HWSK------ 395 (467)
Q Consensus 335 ~~~lf~~la~ci~S~h~qVAErAL~~w~N~~~~~li~~~---------~~~i~Pii~~~L~~~~~~----HWn~------ 395 (467)
...+...+-+|.+-+...|+..++.||.. ++...... .+.+++-+++.+.+.++- .|+.
T Consensus 330 l~~ll~~lL~~~~~~~deVs~~t~~Fw~~--~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed 407 (980)
T 3ibv_A 330 LYNLFPYLIRYLSDDYDETSTAVFPFLSD--LLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE 407 (980)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHTTHHHHHH--HHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHH--HHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH
Confidence 34566677788888888999999999974 23332211 123555556655554332 4764
Q ss_pred -----HHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041109 396 -----SVKQLTENVKVMLEQMDPNLYSK----CLEATEIRESAARQEEMKRKEKWRRIETLAAA 450 (467)
Q Consensus 396 -----~Vr~~a~~vl~~l~e~D~~lf~~----~~~~~~~~~~~~~~~~~~r~~~W~~i~~~A~~ 450 (467)
..|.....++..+.-++++++.. .....-...-. ......|+.+|...-.
T Consensus 408 ~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~-----~~~~~~W~~~EaaL~~ 466 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT-----LSPENSWQLIEFALYE 466 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHH
Confidence 46666567778888888888766 33322111000 0013569999987644
No 64
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=29.83 E-value=81 Score=23.09 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=36.1
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHH
Q 041109 237 EIWGSIINGFTVPLKEEHKLFLIRVLIPLHKSKGMQAYHRQLAYCVSQ 284 (467)
Q Consensus 237 eil~sIIngfa~PLKeeh~~fl~~vLlPLhk~~~~~~y~~qL~~cv~q 284 (467)
+++.|+|+. .-|.++|+..+...|=-.-..+.+..|||-+..++..
T Consensus 5 sViRSvikS--S~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~~ 50 (56)
T 1oks_A 5 SVIRSIIKS--SRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIMK 50 (56)
T ss_dssp HHHHHHHHH--SCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccchHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 345667765 3578899999988888888889999999888777654
No 65
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.79 E-value=3e+02 Score=24.09 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=53.0
Q ss_pred HHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHHHHH-HHHHHHhHhhC-CCCHHHHHHHHHhh
Q 041109 284 QFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRRLAL-PLCTKITKCLN-SCNSEVAERALYVW 361 (467)
Q Consensus 284 qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~i~~-~lf~~la~ci~-S~h~qVAErAL~~w 361 (467)
-.+..++.-+..+++.|.|.=-..|+.-+..-|..++.++..++..--..+.. .+...+.+.++ ..|.+|-++++.+.
T Consensus 41 D~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li 120 (163)
T 1x5b_A 41 DKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 45556777777888887665555789999999999999999888654433331 22222323333 37889999988654
No 66
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=24.25 E-value=3.5e+02 Score=23.41 Aligned_cols=101 Identities=10% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHhhccCCCCCchhHhHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc------chhHHHH
Q 041109 297 ARGILKYWPVTNCRKEVLLIGELEELVDSI-DPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN------NEQFVRM 369 (467)
Q Consensus 297 i~~llk~WP~tns~KevlFL~el~~ile~~-~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~------N~~~~~l 369 (467)
++.--+.=|+..+.+. |.+|.... +.++|..++..|.+|+.. ...+..+.-.||.+.. ++.++.-
T Consensus 10 VreAT~~d~wGP~~~~------m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~vv~~ 81 (144)
T 1eyh_A 10 VREATSNDPWGPSSSL------MSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERVSQQ 81 (144)
T ss_dssp HHHHTCSSSSCCCHHH------HHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhCCCCCCCCHHH------HHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHHHHH
Confidence 3333333355555554 44555543 678899999999999864 2257888888886552 1333333
Q ss_pred HhhccccchhhhhHHHHH---H--hhccccHHHHHHHHHHHHHHHh
Q 041109 370 VSSSLEDVFPVIVEGMEK---N--LKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 370 i~~~~~~i~Pii~~~L~~---~--~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
+.++...| -.|.. . .-.-|...||..|..++.+|.|
T Consensus 82 ~~~~~~~i-----~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 82 CKENMYAV-----QTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHTHHHH-----HGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHH-----hhhccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 33322211 11111 0 1224788999999999999976
No 67
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=24.20 E-value=66 Score=28.12 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc------chhHHHHHhhccccchhhh-hHHHHH
Q 041109 315 LIGELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN------NEQFVRMVSSSLEDVFPVI-VEGMEK 387 (467)
Q Consensus 315 FL~el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~------N~~~~~li~~~~~~i~Pii-~~~L~~ 387 (467)
.++||..+.-.-+.+.+..++..|++|+.. .|+| |.-.||.++. ++.|+.-+.++...|=... |-....
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 355666665444445678899889998887 4554 6677775542 3566666666653211100 000000
Q ss_pred Hh-hccccHHHHHHHHHHHHHHHhcC
Q 041109 388 NL-KLHWSKSVKQLTENVKVMLEQMD 412 (467)
Q Consensus 388 ~~-~~HWn~~Vr~~a~~vl~~l~e~D 412 (467)
-. -.-.+..||..|..++++|.+-+
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred cccccchhHHHHHHHHHHHHHHhCcC
Confidence 00 12356889999999999997655
No 68
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=22.74 E-value=6e+02 Score=25.62 Aligned_cols=228 Identities=13% Similarity=0.118 Sum_probs=125.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhhh--hccchHHHHHHHHHHHhhhhhccCCccChHHHHHHHHHHHhccCCCchH
Q 041109 175 LTNLLSLFQSEDLRERDSLKNIYHRIYAK--FTFYRSFMRKAMNDVFLQYNFETEKHCGIGELLEIWGSIINGFTVPLKE 252 (467)
Q Consensus 175 i~~Ll~lf~S~DprER~~LktiLhrIY~k--f~~~R~~Irk~i~n~f~~fi~e~~~~~GI~ELLeil~sIIngfa~PLKe 252 (467)
|..|+..+.|.|+..+-.--.-++++-.+ ..+....|...+-..|.+++.......--.+..+.|+.|-.|- .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-----~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-----S 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-----H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-----H
Confidence 56788999999999988877777776543 3444455655566778888865554444456788888888774 4
Q ss_pred HHHHHHH-----HHhhhccCCcchhhhHHHHHHHHHHHHhcCCCcHHHH-----HHHhhccCCCCCchh-HhHH----HH
Q 041109 253 EHKLFLI-----RVLIPLHKSKGMQAYHRQLAYCVSQFVQKEPALGGLV-----ARGILKYWPVTNCRK-EVLL----IG 317 (467)
Q Consensus 253 eh~~fl~-----~vLlPLhk~~~~~~y~~qL~~cv~qf~~kdp~L~~~v-----i~~llk~WP~tns~K-evlF----L~ 317 (467)
+++.-+. ..|+.|.+++.... ..+-+.++.......+..-..+ +..|+..--..+... ...+ ..
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v-~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHI-SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHH-HHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHH-HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 5555443 45677777765433 3444555555554444433322 122232222222111 1112 22
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc-----chhHHHHHhhccccchhhhhHHHHHHhhcc
Q 041109 318 ELEELVDSIDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN-----NEQFVRMVSSSLEDVFPVIVEGMEKNLKLH 392 (467)
Q Consensus 318 el~~ile~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~-----N~~~~~li~~~~~~i~Pii~~~L~~~~~~H 392 (467)
-+..+...-.+..-......+...|.+++.|.+..|-+.|+..+. ++.....+.. ..++|.++.-| .|
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL-----~~ 285 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLL-----GA 285 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT--TTCHHHHHHHH-----TC
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh--cccchhhhhhh-----cC
Confidence 333333222111111223455667788889999998887764332 1222233322 22455555433 24
Q ss_pred ccHHHHHHHHHHHHHHHhcCHHH
Q 041109 393 WSKSVKQLTENVKVMLEQMDPNL 415 (467)
Q Consensus 393 Wn~~Vr~~a~~vl~~l~e~D~~l 415 (467)
=+..++..+..++.-+...++..
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHH
Confidence 46778877777777665555433
No 69
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.94 E-value=1.5e+02 Score=25.63 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=51.5
Q ss_pred HHHHHhcCCCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCCh----------HHHHHHHHHHHHHHhHhhCCCCH
Q 041109 282 VSQFVQKEPALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDP----------AQYRRLALPLCTKITKCLNSCNS 351 (467)
Q Consensus 282 v~qf~~kdp~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~----------~~f~~i~~~lf~~la~ci~S~h~ 351 (467)
++..+..+..-+..++..+.++--++.+.+.+.+|..+.+|+..... ..|.+....+|..+..|. ..+-
T Consensus 29 LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~~-~~~r 107 (145)
T 3d9j_A 29 ITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCP-GDDK 107 (145)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSSC-GGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhCC-HHHH
Confidence 34444444444555555555555557778888888888888864332 246666677776666554 5666
Q ss_pred HHHHHHHHhhcc
Q 041109 352 EVAERALYVWNN 363 (467)
Q Consensus 352 qVAErAL~~w~N 363 (467)
.-.+|-+.+|..
T Consensus 108 ~kl~rLl~iW~~ 119 (145)
T 3d9j_A 108 SKIVRVLNLWQK 119 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 677788899963
No 70
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=21.91 E-value=3.7e+02 Score=23.47 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHHhHhhCCCCHHHHHHHHHhhc----c--hhHHHHHhhccccchhhhhHHHHH----
Q 041109 319 LEELVDS-IDPAQYRRLALPLCTKITKCLNSCNSEVAERALYVWN----N--EQFVRMVSSSLEDVFPVIVEGMEK---- 387 (467)
Q Consensus 319 l~~ile~-~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAL~~w~----N--~~~~~li~~~~~~i~Pii~~~L~~---- 387 (467)
+.+|... -+..+|..++..|.+|+...- ..+....-.||.+.. | +.++.-+.++...| ..|.+
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~vv~~~r~~~~~i-----~~L~~F~~~ 105 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLI-----RILETFHYI 105 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHHHHHHHTTHHHH-----HGGGGCCCB
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----Hhhhccccc
Confidence 4455554 367899999999999988531 246788888885542 2 34444343433211 11111
Q ss_pred -HhhccccHHHHHHHHHHHHHHHh
Q 041109 388 -NLKLHWSKSVKQLTENVKVMLEQ 410 (467)
Q Consensus 388 -~~~~HWn~~Vr~~a~~vl~~l~e 410 (467)
..-..|-..||..|..++.+|.|
T Consensus 106 d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 106 DSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp CTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCchHHHHHHHHHHHHHHHcC
Confidence 01235888999999999999965
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=21.28 E-value=5.3e+02 Score=24.47 Aligned_cols=76 Identities=8% Similarity=0.060 Sum_probs=48.7
Q ss_pred HHHHHhHhhCCCCHHHHHHHHHhhcc-----hhHHHHHhhccccchhhhhHHHHHHhhccccHHHHHHHHHHHHHHHhcC
Q 041109 338 LCTKITKCLNSCNSEVAERALYVWNN-----EQFVRMVSSSLEDVFPVIVEGMEKNLKLHWSKSVKQLTENVKVMLEQMD 412 (467)
Q Consensus 338 lf~~la~ci~S~h~qVAErAL~~w~N-----~~~~~li~~~~~~i~Pii~~~L~~~~~~HWn~~Vr~~a~~vl~~l~e~D 412 (467)
.+..|..++.|.+..|-.+|+....| +.....+.+. -++|.++.-| .+-+..|+..+..++.-+....
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~--g~i~~Lv~LL-----~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM--GMVQQLVALV-----RTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT--THHHHHHHHH-----TSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc--CCHHHHHHHH-----cCCChhHHHHHHHHHHHHHhCC
Confidence 45667777888899988887754433 2222333222 2455555433 2447889999999998888877
Q ss_pred HHHHHHHH
Q 041109 413 PNLYSKCL 420 (467)
Q Consensus 413 ~~lf~~~~ 420 (467)
+.....|.
T Consensus 241 ~~~~~~~~ 248 (296)
T 1xqr_A 241 PQGVRECR 248 (296)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 76655554
No 72
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=20.34 E-value=85 Score=25.60 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=36.8
Q ss_pred CCcHHHHHHHhhccCCCCCchhHhHHHHHHHHHhhcCChHHHHH
Q 041109 290 PALGGLVARGILKYWPVTNCRKEVLLIGELEELVDSIDPAQYRR 333 (467)
Q Consensus 290 p~L~~~vi~~llk~WP~tns~KevlFL~el~~ile~~~~~~f~~ 333 (467)
--....-|.+|..-=+...+..||.|+.|+..++..+|.+-|..
T Consensus 19 rwi~~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d 62 (92)
T 1xl3_C 19 RWAGIHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSD 62 (92)
T ss_dssp TTCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSC
T ss_pred cccCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCC
Confidence 44566778888888899999999999999999999888766643
Done!