BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041111
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 89 GCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAI 146
GC AG + LAK L + ++ L+V +EN ++ + ++ M L+ LF G AAI
Sbjct: 164 GCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAI 223
Query: 147 LLXXXXXXXXXXK-YELVHTLR-----THK--GGDDRSFGRKIFKMKIKPYIPNFKL--- 195
++ +E+V T + +H GG R G + K P I + +
Sbjct: 224 IIGSDPVPEVENPLFEIVSTDQQLVPNSHGAIGGLLREVGLTFYLNKSVPDIISQNINDA 283
Query: 196 ---AFEHICI----------RTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCL 242
AF+ + I GGRA+LD+VE+ + L M+ +R L +GN SS+C+
Sbjct: 284 LSKAFDPLGISDYNSIFWIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACV 343
Query: 243 WYKLAYFEAKRRIRKGDRT------WQI--AFGSGFKCNSAVWRAL 280
++ + K+ + G +T W + FG G + V R++
Sbjct: 344 FFIMDLMR-KKSLEAGLKTTGEGLDWGVLFGFGPGLTIETVVLRSM 388
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y GC AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 110/270 (40%), Gaps = 29/270 (10%)
Query: 23 EARKETESVIIGAID--ELLAKTGVKPRDIGILVVNSSLFNPMPSLSAMVVNHYKLRGNI 80
EA+ +VI A+D ELLA DI +++ S MPSL+A ++N
Sbjct: 83 EAKSRVPAVIQRALDDAELLAT------DIDVIIYVSCTGFMMPSLTAWLINEMGFDSTT 136
Query: 81 LSYNFGGVGCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDRSM--LLTNCL 138
+GC+AG +I+ A P + AL+V+ E ++ Y D + LL N L
Sbjct: 137 RQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-CYQPTDLGVGSLLCNGL 195
Query: 139 FRLGGAAILLXXXXXXXXXXKYE---LVHTLRTHKGGDDRSFG-----RKIFKMKIKPYI 190
F G AA ++ + L+ D ++ G K ++P
Sbjct: 196 FGDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLA 255
Query: 191 PNFK-LAFEH---------ICIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSS 240
P K LA EH + GG +LD++ L+++ SR TL +GN +S+
Sbjct: 256 PALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASA 315
Query: 241 CLWYKLAYFEAKRRIRKGDRTWQIAFGSGF 270
+ L + + +G R FG G
Sbjct: 316 VVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V S+ +P + LR + GC AG + LAK L + +
Sbjct: 131 LIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARV 190
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 191 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 250
Query: 169 ---HKGGDDRSFGRKIFKMKIKPYIPN---------FKLAFEHICI----------RTGG 206
+G D +K +P+ AFE + I GG
Sbjct: 251 APDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 310
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 311 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 369
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 370 EWGVLFGFGPGLTIETVVLRSV 391
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 112/282 (39%), Gaps = 37/282 (13%)
Query: 33 IGAIDELLAKTGVKPRDIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSA 92
+ AIDE G+ I L+ ++ MP +V L ++ Y G +A
Sbjct: 116 VKAIDEW----GLPKSKITHLIFCTTAGVDMPGADYQLVKLLGLSPSVKRYMLYQQGXAA 171
Query: 93 GLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXX 150
G + LAK L + S L+V +E + ++ N+ + L+ LF G AA+++
Sbjct: 172 GGTVLRLAKDLAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVGS 231
Query: 151 XXXXXXXXK-YELVHTLRT-------------HKGGDDRSFGRKIFKMKIKPYIPNFKLA 196
+E+V T +T +GG R + M K + A
Sbjct: 232 GPHLAVERPIFEIVSTDQTILPDTEKAMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKA 291
Query: 197 FEHICI----------RTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWY-- 244
+ I GGRA+LD+VE+ L L E + SR L +GN S+C+ +
Sbjct: 292 LSPLGITDWNSVFWMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFII 351
Query: 245 ----KLAYFEAKRRIRKG-DRTWQIAFGSGFKCNSAVWRALR 281
K + E K +G D FG G + V R++R
Sbjct: 352 DEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 393
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 126 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 185
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 186 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 245
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I + GG
Sbjct: 246 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAQPGG 305
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 306 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 364
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 365 EWGVLFGFGPGLTIETVVLRSV 386
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 126 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 185
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 186 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 245
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 246 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 305
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 306 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 364
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 365 EWGVLFGFGPGLTIETVVLRSV 386
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDAHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDFHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDLHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 36/271 (13%)
Query: 49 DIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPP 108
DI LVV ++ +P + +V LR ++ GC AG ++ LAK L +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 109 NSCALVVSTENITMNWYAGNDRS---MLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHT 165
+ LVV+ E +T+ ++ G D LL LF G AA+++ +E+V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 166 LRTHKGGDDRSFGRKIFKMKIKP----YIPNFKLAFEHIC-------------------- 201
+T D + + + ++ +P C
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDL 325
Query: 202 ---IRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKG 258
+ G ++D+V+ L L + SR L +GN S + + + L +R+
Sbjct: 326 FWAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAA 385
Query: 259 DRTW-----QIAFGSGFKCNSAVWRALRTIN 284
W +AFG G ++ + A +N
Sbjct: 386 AGEWPELGVMMAFGPGMTVDAMLLHATSHVN 416
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 26/184 (14%)
Query: 89 GCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAI 146
GC AG + +AK L + + LV+ +E + + ++ + L+ LF G +A+
Sbjct: 186 GCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASAL 245
Query: 147 LLXXXXXXXXXXK-YELVHTLRTHKGGDDRSFGRKI----FKMKIKPYIPNFKLAFEHIC 201
++ +E+V T +T + + G K+ ++K +P+ A C
Sbjct: 246 IVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENC 305
Query: 202 -------------------IRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCL 242
+ GGRA+LD VE L L+ + P+R + +GN SS+C+
Sbjct: 306 MVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACV 365
Query: 243 WYKL 246
+ L
Sbjct: 366 HFIL 369
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 26/184 (14%)
Query: 89 GCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAI 146
GC AG + +AK L + + LV+ +E + + ++ + L+ LF G +A+
Sbjct: 170 GCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASAL 229
Query: 147 LLXXXXXXXXXXK-YELVHTLRTHKGGDDRSFGRKI----FKMKIKPYIPNFKLAFEHIC 201
++ +E+V T +T + + G K+ ++K +P+ A C
Sbjct: 230 IVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENC 289
Query: 202 -------------------IRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCL 242
+ GGRA+LD VE L L+ + P+R + +GN SS+C+
Sbjct: 290 MVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACV 349
Query: 243 WYKL 246
+ L
Sbjct: 350 HFIL 353
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 125 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 184
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ LF G AA+++ +E+V T +T
Sbjct: 185 LVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 244
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 245 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 304
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +G SS+C+ + L K+ + G +T
Sbjct: 305 PAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMR-KKSTQNGLKTTGEGL 363
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 364 EWGVLFGFGPGLTIETVVLRSV 385
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 97/243 (39%), Gaps = 41/243 (16%)
Query: 63 MPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCALVVSTENITM 122
MP + N L ++ GC AG + AK L + + LVV +E +
Sbjct: 724 MPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVV 783
Query: 123 NWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRTHK-------GG 172
+ ++ ++ L+ LF G AA+++ ++LV +T G
Sbjct: 784 TFRGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAG 843
Query: 173 DDRSFGRKIFKMKIKPYIPNF---------KLAFEHICI----------RTGGRAVLDEV 213
+ R G + P +P AF+ + I GG A+LD V
Sbjct: 844 NLREVG---LTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAV 900
Query: 214 EKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT-------WQIAF 266
E L L++ +E +R L +GN SS+C+ + L E +++ KG+R W + F
Sbjct: 901 EAKLNLDKKKLEATRHVLSEYGNMSSACVLFILD--EMRKKSLKGERATTGEGLDWGVLF 958
Query: 267 GSG 269
G G
Sbjct: 959 GFG 961
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 35/262 (13%)
Query: 53 LVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCA 112
L+V ++ MP + LR + Y G AG + LAK L + +
Sbjct: 127 LIVCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARV 186
Query: 113 LVVSTENITMNWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT- 168
LVV +E + + +D + L+ L G AA+++ +E+V T +T
Sbjct: 187 LVVCSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTI 246
Query: 169 ---HKGGDD---RSFGRKIFKMKIKPYIPNFKL------AFEHICI----------RTGG 206
+G D R G +K P I + + AFE + I GG
Sbjct: 247 APDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGG 306
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT----- 261
A+LD+VE+ L L M +R L +GN SS+C+ + L K+ + G +T
Sbjct: 307 PAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMR-KKSTQNGLKTTGEGL 365
Query: 262 -WQI--AFGSGFKCNSAVWRAL 280
W + FG G + V R++
Sbjct: 366 EWGVLFGFGPGLTIETVVLRSV 387
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 100/266 (37%), Gaps = 36/266 (13%)
Query: 49 DIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPP 108
DI LVV ++ +P + +V LR ++ GC AG ++ LAK L +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 109 NSCALVVSTENITMNWYAGNDRS---MLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHT 165
+ LVV+ E +T+ ++ G D LL LF G AA+++ +E+V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 166 LRTHKGGDDRSFGRKIFKMKIKP----YIPNFKLAFEHIC-------------------- 201
+T D + + + ++ +P C
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLDMFGPLLGGDGGGGWNDL 295
Query: 202 ---IRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKG 258
+ G ++D+V+ L L + SR L +GN S + + + L +R+
Sbjct: 296 FWAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDELRRQRKEAAA 355
Query: 259 DRTW-----QIAFGSGFKCNSAVWRA 279
W +AFG G ++ + A
Sbjct: 356 AGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 35/256 (13%)
Query: 63 MPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCALVVSTENITM 122
MP + L ++ + F +GC AG + LAK + + + L+V +E T
Sbjct: 133 MPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTT 192
Query: 123 NWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT----HKGGDDR 175
+ ++ + ++ LF G AA+++ +ELV T +T G +
Sbjct: 193 CFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIFELVSTAQTIVPESHGAIEG 252
Query: 176 SFGRKIFKMKIKPYIP-----NFKL----AFEHICI----------RTGGRAVLDEVEKH 216
+ +P N K AF + I GG A+LD+V
Sbjct: 253 HLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAK 312
Query: 217 LKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT------WQI--AFGS 268
+ L + ++ +R L +GN SS+ +++ + K+ + G T W + FG
Sbjct: 313 VGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMR-KKSLENGQATTGEGLEWGVLFGFGP 371
Query: 269 GFKCNSAVWRALRTIN 284
G + V R++ I+
Sbjct: 372 GITVETVVLRSVPVIS 387
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 118/268 (44%), Gaps = 32/268 (11%)
Query: 40 LAKTGVKPRDIGILVVNSSLFNPM--PSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISI 97
L G+ IG+LV N+S+ PS +++V + + + ++++ C A + +
Sbjct: 73 LIDAGIGIEKIGLLV-NTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFINGM 130
Query: 98 DLAKQLLQLPPNSCALVVSTENITMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXXXXX 155
D+A ++L+ ALVV E + + +R S +T FR AA+ L
Sbjct: 131 DIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGAAAM 190
Query: 156 XXXKYELVHTLRTHKGGDDRSFGR--KIFKMKIKPYIPNFKLAF-EHICIRT----GGRA 208
+ ELV +KGG RS K+ + + + + +L E I + R
Sbjct: 191 VMARTELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFLAARQ 250
Query: 209 VL----DEVEKHLK-----------LNEWVMEPSR-MTLY-RFGNTSSSCLWYKLAYFEA 251
VL DE+++ + + + ++P++ MT++ GN + + L+ +
Sbjct: 251 VLGWAVDELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKLKE 310
Query: 252 KRRIRKGDRTWQIAFGSGFKCNSA--VW 277
R++KGDR + GSG C+ A VW
Sbjct: 311 LGRLKKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 201 CIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLA-----YFEAKRRI 255
+ GG A+LD+VE L+L + + SR L +GN SS+ + + L E+ +
Sbjct: 319 AVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKST 378
Query: 256 RKGDRTWQ--IAFGSGFKCNSAVWRAL 280
W I FG G + + RAL
Sbjct: 379 FGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 37/272 (13%)
Query: 41 AKTGVKPRDIGI----LVVNSSLFNPM--PSLSAMVVNHYKLRGNILSYNFGGVGCSAGL 94
A+ + +IGI L++N+S+ PS +++V + + + ++++ C A +
Sbjct: 76 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 134
Query: 95 ISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXX 152
+D+A ++L+ ALVV E + + +R S +T FR AA+ L
Sbjct: 135 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 194
Query: 153 XXXXXXKYELVHTLRTHKGGDDRS-----------FGRKIFKMKIKPYIPNFKLAFEHIC 201
+ ELV +KGG RS R + ++ I KLA +
Sbjct: 195 AAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLL-LIEGIKLAQKTFV 253
Query: 202 I--RTGGRAV--LDEVEKHLK--------LNEWVMEPSR-MTLY-RFGNTSSSCLWYKLA 247
+ G AV LD+ H + + ++P++ MT++ GN + + L+
Sbjct: 254 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLS 313
Query: 248 YFEAKRRIRKGDRTWQIAFGSGFKCNSA--VW 277
+ R++KGDR + GSG C+ A VW
Sbjct: 314 KLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 37/272 (13%)
Query: 41 AKTGVKPRDIGI----LVVNSSLFNPM--PSLSAMVVNHYKLRGNILSYNFGGVGCSAGL 94
A+ + +IGI L++N+S+ PS +++V + + + ++++ C A +
Sbjct: 75 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 133
Query: 95 ISIDLAKQLLQLPPNSCALVVSTENITMNWYAGNDR--SMLLTNCLFRLGGAAILLXXXX 152
+D+A ++L+ ALVV E + + +R S +T FR AA+ L
Sbjct: 134 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 193
Query: 153 XXXXXXKYELVHTLRTHKGGDDRS-----------FGRKIFKMKIKPYIPNFKLAFEHIC 201
+ ELV +KGG RS R + ++ I KLA +
Sbjct: 194 AAMVMARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLL-LIEGIKLAQKTFV 252
Query: 202 I--RTGGRAV--LDEVEKHLK--------LNEWVMEPSR-MTLY-RFGNTSSSCLWYKLA 247
+ G AV LD+ H + + ++P++ MT++ GN + + L+
Sbjct: 253 AAKQVLGWAVEELDQFVIHQVSRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLS 312
Query: 248 YFEAKRRIRKGDRTWQIAFGSGFKCNSA--VW 277
+ R++KGDR + GSG C+ A VW
Sbjct: 313 KLKELGRLKKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 35/256 (13%)
Query: 63 MPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPPNSCALVVSTENITM 122
MP + L ++ + F +GC AG + LAK + + + L+V +E T
Sbjct: 133 MPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTT 192
Query: 123 NWYAGNDRSM--LLTNCLFRLGGAAILLXXXXXXXXXXK-YELVHTLRT----HKGGDDR 175
+ ++ + ++ + G AA+++ +ELV T +T G +
Sbjct: 193 CFRGPSETHLDSMIGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQTIVPESHGAIEG 252
Query: 176 SFGRKIFKMKIKPYIP-----NFKL----AFEHICI----------RTGGRAVLDEVEKH 216
+ +P N K AF + I GG A+LD+V
Sbjct: 253 HLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSLFWIAHPGGPAILDQVTAK 312
Query: 217 LKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRT------WQI--AFGS 268
+ L + ++ +R L +GN SS+ +++ + K+ + G T W + FG
Sbjct: 313 VGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMR-KKSLENGQATTGEGLEWGVLFGFGP 371
Query: 269 GFKCNSAVWRALRTIN 284
G + V R++ I+
Sbjct: 372 GITVETVVLRSVPVIS 387
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 205 GGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQ- 263
GGRA+LD+VE LKL +R L+ +GN S+ + Y L ++ KG T+
Sbjct: 321 GGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMR-RKSAAKGLETYGE 379
Query: 264 -------IAFGSGFKCNSAVWRAL 280
+ FG G + + +L
Sbjct: 380 GLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 205 GGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQ- 263
GGRA+LD+VE LKL +R L+ +GN S+ + Y L ++ KG T+
Sbjct: 321 GGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMR-RKSAAKGLETYGE 379
Query: 264 -------IAFGSGFKCNSAVWRAL 280
+ FG G + + +L
Sbjct: 380 GLEWGVLLGFGPGITVETILLHSL 403
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/262 (18%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 35 AIDELLAKTGVKPRDIGILVVNSSLFNPM---PSLSAMVVNHYKLRGNILSYNFGGVGCS 91
A E L + + P ++ ++++ + P PS + +V K +G + +++ CS
Sbjct: 57 AAKEALREANLSPEELDLIILAT--LTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACS 112
Query: 92 AGLISIDLAKQLLQLPPNSCALVVSTENIT--MNWYAGNDRSMLLTNCLFRLGGAAILLX 149
+ ++D+A ++ LV+ E ++ ++W DRS T LF G A+++
Sbjct: 113 GFIYALDIADSFIKSGKAKNVLVIGAEKLSEAVDW---EDRS---TCVLFGDGAGAVVVT 166
Query: 150 XXX------XXXXXXKYELVHTLRTHKGGDDRSFGRKIFKMKIKPYIPNFKLAFEHICIR 203
+ L L G R GR++FK+ ++ + E ++
Sbjct: 167 RSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVK 226
Query: 204 TGGRAVLDEVEKHLKLNEWVME----PSR---MTLYRFGNTSSSCLWYKLAYFEAKRRIR 256
+++ + ++++ + E P + + ++GNTS++ + L + +++
Sbjct: 227 PEEVSLVIPHQANVRIINALAEKLNIPKEKVFVNIQKYGNTSAASIPIALHEAIKEGKVK 286
Query: 257 KGDRTWQIAFGSGFKCNSAVWR 278
+GD A G G + + R
Sbjct: 287 RGDLILMTAMGGGLTWGAVLLR 308
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 26/268 (9%)
Query: 40 LAKTGVKPRDIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDL 99
LA + +IG+LV+ +S P + +V L +I +GC+A + ++
Sbjct: 125 LAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGT 184
Query: 100 AKQLLQLPPNSCALVVSTENITMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXK 159
A ++ P ALVV E ++N +D + ++ + LF G AA+++
Sbjct: 185 ATNYVRAHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEP 244
Query: 160 YELV------HTLRTHKGGDDRSFGRKIFKMKIKPYIPNF----------------KLAF 197
++V L + G ++ +P + L
Sbjct: 245 GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQI 304
Query: 198 EHI---CIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRR 254
I I GG ++++ + L ++ + S L RFGN S L + L +
Sbjct: 305 SDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAE 364
Query: 255 IRKGDRTW-QIAFGSGFKCNSAVWRALR 281
K T AFG G ++ +R
Sbjct: 365 SAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 26/268 (9%)
Query: 40 LAKTGVKPRDIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDL 99
LA + +IG+LV+ +S P + +V L +I +GC+A + ++
Sbjct: 125 LAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGT 184
Query: 100 AKQLLQLPPNSCALVVSTENITMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXK 159
A ++ P ALVV E ++N +D + ++ + LF G AA+++
Sbjct: 185 ATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEP 244
Query: 160 YELV------HTLRTHKGGDDRSFGRKIFKMKIKPYIPNF----------------KLAF 197
++V L + G ++ +P + L
Sbjct: 245 GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQI 304
Query: 198 EHI---CIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRR 254
I I GG ++++ + L ++ + S L RFGN S L + L +
Sbjct: 305 SDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETMVQQAE 364
Query: 255 IRKGDRTW-QIAFGSGFKCNSAVWRALR 281
K T AFG G ++ +R
Sbjct: 365 SAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 201 CIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDR 260
+ GG A+LD++E L L+ M+ SR L +GN SS+ + + L +IRK
Sbjct: 314 AVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVL------DQIRKNSE 367
Query: 261 TWQI-AFGSGFK 271
+ G GF+
Sbjct: 368 ELHLPTTGEGFE 379
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 40 LAKTGVKPRDIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDL 99
L G+ D+ L+ ++S +P L + N LRG+ + C AG S+ L
Sbjct: 149 LQIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLAL 208
Query: 100 AKQLLQLPPNSCALVVSTENITMNWYAGNDR-SMLLTNCLF 139
A L+ P+ LVV +E ++ + +D L+ LF
Sbjct: 209 AADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLF 249
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 104/253 (41%), Gaps = 36/253 (14%)
Query: 49 DIGILVVNSSLFNPMPSLSAMVVNHYKLRGNILSYNFGGVGCSAGLISIDLAKQLLQLPP 108
DI +V +S +P ++ +++ L ++ + +GC AGL S+ A L + P
Sbjct: 116 DITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASP 175
Query: 109 NSCALVVSTENITMNWYAGNDRSMLLTNCLFRLGGAAILLXXXXXXXXXXKYELVHTLR- 167
+ LVV TE ++++ + ++ + +F G AA ++ YE++ ++
Sbjct: 176 RNRILVVCTEVCSLHFSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINR 235
Query: 168 -------------THKG---GDDRSF------GRKIF--------KMKIKPYIPNFKLAF 197
+G G D S G + F K++ I F
Sbjct: 236 SFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDCEF 295
Query: 198 EHICIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRK 257
I TGG+++L +E L ++ + + + +GN SS+ + + + + A++
Sbjct: 296 ---LIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH--ARKSKSL 350
Query: 258 GDRTWQIAFGSGF 270
+ +AFG G
Sbjct: 351 PTYSISLAFGPGL 363
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 178 GRKIFKMKIK-------PYIPNFKLAFEHICIRTGGRA---VLDEVEKHLKLNEWVMEPS 227
GR++FK ++ I L E I + +A ++D + L L W E
Sbjct: 211 GREVFKFAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAARERLGL-PW--ERV 267
Query: 228 RMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAV 276
+ + R+GNTS++ + L RIR+GD ++FG+G +AV
Sbjct: 268 AVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAV 316
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 197 FEHICIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIR 256
+H+ +LD V++ L + + +T+ R GN +S+ LA F I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 257 KGDRTWQIAFGSGFKCNSAVWRALRTIN 284
G R + +GSG +A++R +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 197 FEHICIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIR 256
+H+ +LD V++ L + + +T+ R GN +S+ LA F I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 257 KGDRTWQIAFGSGFKCNSAVWRALRTIN 284
G R + +GSG +A++R +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 197 FEHICIRTGGRAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIR 256
+H+ +LD V++ L + + +T+ R GN +S+ LA F I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 257 KGDRTWQIAFGSGFKCNSAVWRALRTIN 284
G R + +GSG +A++R +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 35/226 (15%)
Query: 89 GCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGN--DRSMLLTNCLFRLGGAAI 146
C G + +AK L + + LVV+ E +++ N D L F G A+
Sbjct: 163 ACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDGAGAV 222
Query: 147 L--------LXXXXXXXXXXKYELVHTLRTHKGGDDRSFGRKIFKMKIKPYI--PNFKLA 196
+ + E V + GG R+FG + + P I N +
Sbjct: 223 VVGADPLEGIEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRS 282
Query: 197 FEHICIRTGGR--------------AVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCL 242
E G R A++D +E L+L+ + +R +GN S+ +
Sbjct: 283 LERALAPLGVREWNDVFWVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATV 342
Query: 243 WYKLAYFEAKRRIRKGDRT------WQI--AFGSGFKCNSAVWRAL 280
++ + KR +G T W + FG G + V R++
Sbjct: 343 YFVMDELR-KRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 35/226 (15%)
Query: 89 GCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWYAGN--DRSMLLTNCLFRLGGAAI 146
C G + +AK L + + LVV+ E +++ N D L F G A+
Sbjct: 163 ACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEALAFQAGFGDGAGAV 222
Query: 147 L--------LXXXXXXXXXXKYELVHTLRTHKGGDDRSFGRKIFKMKIKPYI--PNFKLA 196
+ + E V + GG R+FG + + P I N +
Sbjct: 223 VVGADPLEGIEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRS 282
Query: 197 FEHICIRTGGR--------------AVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCL 242
E G R A++D +E L+L+ + +R +GN S+ +
Sbjct: 283 LERALAPLGVREWNDVFWVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATV 342
Query: 243 WYKLAYFEAKRRIRKGDRT------WQI--AFGSGFKCNSAVWRAL 280
++ + KR +G T W + FG G + V R++
Sbjct: 343 YFVMDELR-KRSAVEGRSTTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 224 MEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAVWR 278
M+ +TL R GNTS++ + L RI+ G AFG GF SA+ R
Sbjct: 285 MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 224 MEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAVWR 278
M+ +TL R GNTS++ + L RI+ G AFG GF SA+ R
Sbjct: 262 MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 224 MEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAVWR 278
M+ +TL R GNTS++ + L RI+ G AFG GF SA+ R
Sbjct: 262 MDNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 90 CSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWY 125
C +GL S+ +A QL+ L LV EN++M+ Y
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPY 128
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 229 MTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAVWR 278
+TL R GNTS++ + L RI+ G AFG GF SA+ R
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 218 KLNEWVMEPSRMTLYRFGNTSSSC----LWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCN 273
+L++ + P T + +G T+ + LA+ ++ GDR G+G+ C
Sbjct: 273 ELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCT 332
Query: 274 SAVWRALR 281
+AV LR
Sbjct: 333 AAVVEILR 340
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 229 MTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCNSAVWR 278
+TL R GNTS++ + L RI+ G AFG GF SA+ R
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 218 KLNEWVMEPSRMTLYRFGNTSSSC----LWYKLAYFEAKRRIRKGDRTWQIAFGSGFKCN 273
+L++ + P T + +G T+ + LA+ ++ GDR G+G+ C
Sbjct: 273 ELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCT 332
Query: 274 SAVWRALR 281
+AV LR
Sbjct: 333 AAVVEILR 340
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 26 KETESVIIG--AIDELLAKTGVKPRDIGILVVNSSLFNPM-PSLSAMVVNHYKLRGNILS 82
K T +V +G A+ E +++ G+ +I +++ + L + +++ + + + ++ S
Sbjct: 25 KNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGLGQNVARQIAINAGIPNSVPS 84
Query: 83 YNFGGVGCSAGLISIDLAKQLLQLPPNSCALVVSTENITMNWY 125
Y + C +GL S+ LA Q + N + TEN++ Y
Sbjct: 85 YTVNKL-CGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPY 126
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 207 RAVLDEVEKHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKLAYFEAKRRIRKGDRTWQIAF 266
R +LD + K +K+ E + + GNT SS L L A + +G R + F
Sbjct: 296 RFMLDALRKKMKIPEHKFP---VLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGF 352
Query: 267 GSGFK 271
G G+
Sbjct: 353 GVGYS 357
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 191 PNFKLAFEHICIRTGGRAVLDEVE-KHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKL 246
P + + ++ LD E L LNEW+ P +TLY + T + W +
Sbjct: 74 PQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISM 130
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 191 PNFKLAFEHICIRTGGRAVLDEVE-KHLKLNEWVMEPSRMTLYRFGNTSSSCLWYKL 246
P + + ++ LD E L LNEW+ P +TLY + T + W +
Sbjct: 81 PQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISM 137
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 177 FGRKIFKMKIKPYIPNFKLAFEHICIRTGGRAVL 210
FG +F+ K + L + + + TGG AV+
Sbjct: 99 FGESVFREKETEALKKLSLMYHQVVVSTGGGAVI 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,031,833
Number of Sequences: 62578
Number of extensions: 353874
Number of successful extensions: 821
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 70
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)