BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041112
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 184/319 (57%), Gaps = 14/319 (4%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG I +N+PS VV L ++ I +RIY AD L A SGI +I+ +GN+ L +
Sbjct: 2 GVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLAN 61
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERL 127
I+ A +W++ NV PY P I+ IA GNE+ GG ++ +LPA +N+ +A
Sbjct: 62 IAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGA----TQSILPAMRNL-NAALSA 116
Query: 128 GLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAY 187
I+VS+ ANSFPPSA VF+ + +M + + + G+P N YP+ AY
Sbjct: 117 AGLGAIKVSTSIRFDEVANSFPPSAGVFK---NAYMTDVARLLASTGAPLLANVYPYFAY 173
Query: 188 KNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETG 247
+++P I LNYATF+ + D L Y ++FDAMVDA YAALEKAG P + V+VSE+G
Sbjct: 174 RDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESG 233
Query: 248 WASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPGPTS 307
W S G A+ NA+ Y GTP + ++ ++ YIFA+FNEN K G +
Sbjct: 234 WPSAGG---FAASAGNARTY--NQGLINHVGGGTP-KKREALETYIFAMFNENQKTGDAT 287
Query: 308 ERNFGLFKADGSIAYEIGF 326
ER+FGLF D S AY I F
Sbjct: 288 ERSFGLFNPDKSPAYNIQF 306
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/319 (38%), Positives = 185/319 (57%), Gaps = 8/319 (2%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG + +N+P P VV+L K+ I +R+YD +QA L+A S I++++ + +++
Sbjct: 2 GVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQS 61
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERL 127
++ A +WI+ NV Y P R IAVGNE++ G+D L++ +LPA +N+Y+AL
Sbjct: 62 LASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALSSA 119
Query: 128 GLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAY 187
GL I+VS+ V S+PPSA F ++ P++QF + G+P +N YP+ +Y
Sbjct: 120 GLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSY 179
Query: 188 KNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETG 247
+P I L YA F ++ G+ Y N+FDA+VDA +AALE+ G + V+VSE+G
Sbjct: 180 TGNPGQISLPYALFTAS-GVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESG 238
Query: 248 WASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPGPTS 307
W S G E A+ NA+ Y GTP RP K ++AYIF +FNEN K G
Sbjct: 239 WPSAGGGAE--ASTSNAQTY--NQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAGGI- 293
Query: 308 ERNFGLFKADGSIAYEIGF 326
E+NFGLF + Y+I F
Sbjct: 294 EQNFGLFYPNKQPVYQISF 312
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 184/323 (56%), Gaps = 12/323 (3%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG +N+P V+ L K + I +RIYD +QAVL+A GS IE+I+G+ N +L+
Sbjct: 3 GVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQS 62
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEI--LGGTDLELSEVLLPAAKNVYSALE 125
++ A +W++ NV + + R IAVGNEI + L++ +LPA +N++ A+
Sbjct: 63 LT-NPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 126 RLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFL 185
GL I+VS+ + NS+PPSA FR+DV ++ P+++F S I SP N YP+
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 186 AYKNDPEHIDLNYATFKS-NRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVS 244
Y +P I L YA F S + + D + Y N+FDA +DA Y+ALE+A ++V+VS
Sbjct: 182 TYAGNPRDISLPYALFTSPSVVVWDGQRG--YKNLFDATLDALYSALERASGGSLEVVVS 239
Query: 245 ETGWASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPG 304
E+GW S G A N + Y GTP RPK+ ++ Y+FA+F+EN K
Sbjct: 240 ESGWPSAG---AFAATFDNGRTY--LSNLIQHVKRGTPKRPKRAIETYLFAMFDEN-KKQ 293
Query: 305 PTSERNFGLFKADGSIAYEIGFT 327
P E++FGLF + Y + F+
Sbjct: 294 PEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 180/320 (56%), Gaps = 10/320 (3%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG+IA+N+PS + V+ L A IK +RIY V A GS IEII+ + N++L+
Sbjct: 4 GVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEA 63
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDL-ELSEVLLPAAKNVYSALER 126
++ A W++ N+ + P K + IAVGNE+ G + + + + PA +N+Y+AL
Sbjct: 64 LA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 127 LGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLA 186
GL I+VS+ + N++PP +FRE+ F+ P++ F ++ P N YP+
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 187 YKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSET 246
+ ++ + L+YA F R + + Y N+FDA+VD+ Y A EK G +++IVSE+
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 247 GWASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPGPT 306
GW S G A +KNA+ Y GTP +P K ++ Y+FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 307 SERNFGLFKADGSIAYEIGF 326
SE++FGLF D Y++ F
Sbjct: 295 SEKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 10/320 (3%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG+IA+N+PS + V+ L A IK +RIY V A GS IEII+ + N++L+
Sbjct: 4 GVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLEA 63
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDL-ELSEVLLPAAKNVYSALER 126
++ A W++ N+ + P K + IAVGNE+ G + + + + PA +N+Y+AL
Sbjct: 64 LA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 127 LGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLA 186
GL I+VS+ + N++PP +FRE+ F+ P++ F ++ P N YP+
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 187 YKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSET 246
+ ++ + L+YA F R + + Y N+FDA+VD+ Y A EK G +++IVS +
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 247 GWASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPGPT 306
GW S G A +KNA+ Y GTP +P K ++ Y+FA+F+EN K G
Sbjct: 238 GWPSEG---HPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 307 SERNFGLFKADGSIAYEIGF 326
SE++FGLF D Y++ F
Sbjct: 295 SEKHFGLFNPDQRPKYQLNF 314
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 177/320 (55%), Gaps = 16/320 (5%)
Query: 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKD 67
G+ YG A+N+P+ +VV++ K+ IK++R+Y +QA L+A G+GI ++VG N+ L +
Sbjct: 2 GVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSN 61
Query: 68 ISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERL 127
++ A +W+K+N+ Y P R + VGNE+ GG + L+PA KNV+ AL
Sbjct: 62 LAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGA----TRNLVPAMKNVHGALVAA 116
Query: 128 GLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAY 187
GL I+V++ S+A+ PPSA F + + FM P++QF ++ +P N YP+LA+
Sbjct: 117 GLGH-IKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAW 175
Query: 188 KNDPEHIDLNYATFK-SNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSET 246
+P +D+ YA F S + D Y N+FD VDA Y A+ K G + ++VSE+
Sbjct: 176 AYNPSAMDMGYALFNASGTVVRDGAYG--YQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 247 GWASRGDENEAGANVKNAKIYXXXXXXXXXXXXGTPYRPKKPVKAYIFALFNENLKPGPT 306
GW S G A NA+ Y GTP P ++ YIFA+FNEN K
Sbjct: 234 GWPSGGGT---AATPANARFY--NQHLINHVGRGTPRHPGA-IETYIFAMFNENQKDSGV 287
Query: 307 SERNFGLFKADGSIAYEIGF 326
E+N+GLF + Y I F
Sbjct: 288 -EQNWGLFYPNMQHVYPINF 306
>pdb|3TPF|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|C Chain C, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|D Chain D, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|E Chain E, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
pdb|3TPF|F Chain F, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Campylobacter Jejuni Subsp.
Jejuni Nctc 11168
Length = 307
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 15/56 (26%)
Query: 207 IHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETGWASRGDENEAGANVK 262
I AK +L YD F+A+ D DV++++T W S G+ENE +K
Sbjct: 197 ISGAKISLGYDK-FEALKDK-------------DVVITDT-WVSXGEENEKERKIK 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,272,706
Number of Sequences: 62578
Number of extensions: 425661
Number of successful extensions: 960
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 15
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)