Query 041112
Match_columns 342
No_of_seqs 178 out of 1180
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 4.6E-92 1E-96 675.8 22.5 310 7-326 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.6E-46 5.6E-51 342.4 23.7 252 4-318 43-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 2.1E-08 4.5E-13 97.6 22.8 246 21-323 26-328 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.8 3.6E-07 7.8E-12 87.5 16.3 155 7-184 30-216 (314)
5 COG3867 Arabinogalactan endo-1 98.4 8E-06 1.7E-10 77.4 14.0 249 21-326 65-390 (403)
6 PF00150 Cellulase: Cellulase 98.0 0.00086 1.9E-08 62.4 19.8 129 6-137 10-172 (281)
7 PRK10150 beta-D-glucuronidase; 98.0 0.0045 9.8E-08 65.2 25.8 257 7-324 295-585 (604)
8 smart00633 Glyco_10 Glycosyl h 97.6 0.017 3.6E-07 54.2 20.3 75 231-323 175-250 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.2 0.072 1.6E-06 50.9 20.0 96 6-101 17-132 (298)
10 PF11790 Glyco_hydro_cc: Glyco 96.9 0.09 1.9E-06 49.0 17.4 168 90-320 64-232 (239)
11 PF00232 Glyco_hydro_1: Glycos 88.6 0.32 7E-06 49.6 2.8 283 22-322 61-441 (455)
12 TIGR03356 BGL beta-galactosida 81.3 6.3 0.00014 39.9 8.1 75 236-319 335-414 (427)
13 cd02875 GH18_chitobiase Chitob 81.2 6.4 0.00014 38.9 7.9 102 32-136 55-157 (358)
14 smart00481 POLIIIAc DNA polyme 76.9 9.4 0.0002 27.7 5.9 43 19-61 15-62 (67)
15 PF02449 Glyco_hydro_42: Beta- 70.6 15 0.00031 36.3 7.2 82 22-103 13-140 (374)
16 PRK13511 6-phospho-beta-galact 70.4 17 0.00038 37.3 7.9 46 22-67 57-121 (469)
17 PLN02849 beta-glucosidase 70.4 13 0.00029 38.5 7.1 76 236-319 383-461 (503)
18 PRK09525 lacZ beta-D-galactosi 68.1 56 0.0012 37.1 11.9 97 6-102 352-464 (1027)
19 cd00598 GH18_chitinase-like Th 67.3 15 0.00034 32.4 6.1 84 45-129 54-142 (210)
20 COG4782 Uncharacterized protei 64.6 24 0.00051 35.2 7.1 59 216-277 125-186 (377)
21 cd06545 GH18_3CO4_chitinase Th 63.9 80 0.0017 29.2 10.4 81 44-129 50-133 (253)
22 PRK10340 ebgA cryptic beta-D-g 63.4 67 0.0014 36.4 11.4 97 7-103 337-452 (1021)
23 PLN02998 beta-glucosidase 63.0 23 0.00051 36.7 7.2 75 236-319 390-466 (497)
24 PF00925 GTP_cyclohydro2: GTP 61.7 12 0.00026 32.9 4.2 38 24-61 131-168 (169)
25 PLN02814 beta-glucosidase 57.4 36 0.00078 35.4 7.4 75 236-319 385-461 (504)
26 KOG0626 Beta-glucosidase, lact 53.3 45 0.00097 34.8 7.2 83 234-324 403-499 (524)
27 PF03662 Glyco_hydro_79n: Glyc 52.4 96 0.0021 30.4 9.0 81 47-127 116-203 (319)
28 TIGR00505 ribA GTP cyclohydrol 52.3 22 0.00049 31.9 4.4 33 25-57 131-163 (191)
29 PRK00393 ribA GTP cyclohydrola 51.9 23 0.00049 32.1 4.4 33 25-57 134-166 (197)
30 PF05990 DUF900: Alpha/beta hy 50.0 76 0.0016 29.2 7.7 43 232-277 43-88 (233)
31 PRK09589 celA 6-phospho-beta-g 49.4 50 0.0011 34.0 7.0 45 22-66 70-134 (476)
32 PF04909 Amidohydro_2: Amidohy 48.7 56 0.0012 29.6 6.6 54 114-182 84-138 (273)
33 cd04743 NPD_PKS 2-Nitropropane 48.4 1.1E+02 0.0024 29.9 8.8 78 6-101 57-134 (320)
34 TIGR01579 MiaB-like-C MiaB-lik 48.1 2.6E+02 0.0056 27.9 11.7 60 109-187 271-330 (414)
35 PF14488 DUF4434: Domain of un 48.0 1.9E+02 0.0041 25.3 10.1 87 44-136 69-160 (166)
36 TIGR03632 bact_S11 30S ribosom 47.0 46 0.001 27.1 5.1 37 22-58 50-91 (108)
37 PF02055 Glyco_hydro_30: O-Gly 46.8 2.3E+02 0.0049 29.5 11.2 60 78-137 209-278 (496)
38 cd04734 OYE_like_3_FMN Old yel 45.5 3E+02 0.0065 26.9 15.3 131 146-281 62-207 (343)
39 COG0621 MiaB 2-methylthioadeni 45.2 1.7E+02 0.0037 30.0 9.8 58 109-185 278-335 (437)
40 cd02874 GH18_CFLE_spore_hydrol 44.6 47 0.001 31.7 5.6 83 43-129 48-138 (313)
41 PF00834 Ribul_P_3_epim: Ribul 44.5 1.7E+02 0.0037 26.5 8.9 99 20-135 68-171 (201)
42 PF06117 DUF957: Enterobacteri 44.5 38 0.00083 25.1 3.7 42 74-127 12-55 (65)
43 PRK12485 bifunctional 3,4-dihy 43.5 29 0.00063 34.6 4.0 32 25-57 331-362 (369)
44 cd02872 GH18_chitolectin_chito 43.2 60 0.0013 31.7 6.2 81 47-128 62-151 (362)
45 TIGR03628 arch_S11P archaeal r 41.7 62 0.0013 26.9 5.1 37 22-58 53-102 (114)
46 cd00641 GTP_cyclohydro2 GTP cy 41.1 42 0.0009 30.2 4.3 33 25-57 133-165 (193)
47 COG2159 Predicted metal-depend 40.8 2.1E+02 0.0046 27.4 9.4 95 115-253 113-209 (293)
48 PRK15014 6-phospho-beta-glucos 40.8 60 0.0013 33.5 6.0 74 239-319 369-448 (477)
49 cd02873 GH18_IDGF The IDGF's ( 40.5 1.2E+02 0.0025 30.6 7.9 20 110-129 168-187 (413)
50 PRK14334 (dimethylallyl)adenos 40.0 3.3E+02 0.0071 27.6 11.1 58 109-185 270-327 (440)
51 TIGR01233 lacG 6-phospho-beta- 39.6 1E+02 0.0022 31.7 7.3 46 22-67 56-120 (467)
52 TIGR02495 NrdG2 anaerobic ribo 38.5 2.6E+02 0.0057 24.2 11.2 42 18-59 46-96 (191)
53 PF13756 Stimulus_sens_1: Stim 38.4 49 0.0011 27.1 4.0 26 20-45 2-30 (112)
54 PF14871 GHL6: Hypothetical gl 38.1 82 0.0018 26.6 5.4 42 20-61 1-65 (132)
55 PF02811 PHP: PHP domain; Int 38.0 82 0.0018 26.5 5.6 44 19-62 16-64 (175)
56 PRK14019 bifunctional 3,4-dihy 37.8 40 0.00087 33.6 4.0 35 25-60 328-362 (367)
57 PF14587 Glyco_hydr_30_2: O-Gl 37.3 1.4E+02 0.003 30.1 7.6 102 44-145 108-234 (384)
58 PRK09607 rps11p 30S ribosomal 37.0 79 0.0017 27.0 5.1 37 22-58 60-109 (132)
59 PF01229 Glyco_hydro_39: Glyco 37.0 4.8E+02 0.01 26.7 13.3 183 94-321 158-350 (486)
60 PRK13347 coproporphyrinogen II 36.2 51 0.0011 33.6 4.6 21 110-130 262-282 (453)
61 PF00411 Ribosomal_S11: Riboso 36.2 73 0.0016 26.0 4.7 36 23-58 51-91 (110)
62 PF06180 CbiK: Cobalt chelatas 35.7 3.9E+02 0.0084 25.3 11.4 140 16-186 55-207 (262)
63 PRK14338 (dimethylallyl)adenos 35.4 4.7E+02 0.01 26.6 11.5 139 18-186 183-346 (459)
64 CHL00041 rps11 ribosomal prote 35.3 90 0.002 25.8 5.1 36 23-58 64-104 (116)
65 cd06418 GH25_BacA-like BacA is 35.0 3.5E+02 0.0077 24.6 12.4 107 19-130 21-143 (212)
66 PRK05723 flavodoxin; Provision 34.6 2.9E+02 0.0064 23.6 11.7 116 6-130 2-118 (151)
67 PRK09318 bifunctional 3,4-dihy 34.5 55 0.0012 32.9 4.4 37 25-61 320-356 (387)
68 PRK09936 hypothetical protein; 34.5 2E+02 0.0043 27.9 7.9 58 7-64 22-96 (296)
69 PRK08815 GTP cyclohydrolase; P 34.2 56 0.0012 32.7 4.3 37 25-61 305-341 (375)
70 PRK09989 hypothetical protein; 33.8 3.2E+02 0.0068 25.1 9.2 52 6-58 3-58 (258)
71 PF00331 Glyco_hydro_10: Glyco 33.8 74 0.0016 30.8 5.1 220 44-322 63-311 (320)
72 COG1433 Uncharacterized conser 33.7 87 0.0019 26.2 4.8 40 22-61 55-94 (121)
73 PRK09314 bifunctional 3,4-dihy 33.4 56 0.0012 32.3 4.1 34 24-57 300-334 (339)
74 PRK09311 bifunctional 3,4-dihy 33.2 60 0.0013 32.8 4.4 37 24-60 338-374 (402)
75 cd01543 PBP1_XylR Ligand-bindi 32.7 3.5E+02 0.0076 24.2 9.3 99 22-141 98-209 (265)
76 PRK05309 30S ribosomal protein 32.6 1E+02 0.0023 25.9 5.2 36 22-57 67-107 (128)
77 PRK13586 1-(5-phosphoribosyl)- 32.3 2.2E+02 0.0047 26.4 7.7 70 19-104 30-108 (232)
78 COG4213 XylF ABC-type xylose t 32.1 63 0.0014 31.7 4.1 76 44-139 176-251 (341)
79 COG2896 MoaA Molybdenum cofact 31.8 3.4E+02 0.0074 26.7 9.2 130 17-175 41-181 (322)
80 PRK09319 bifunctional 3,4-dihy 31.7 63 0.0014 34.0 4.4 37 25-61 343-379 (555)
81 PLN02831 Bifunctional GTP cycl 31.4 65 0.0014 33.1 4.4 37 25-61 373-409 (450)
82 PRK14336 (dimethylallyl)adenos 31.0 4.3E+02 0.0094 26.5 10.3 59 109-186 257-315 (418)
83 smart00636 Glyco_18 Glycosyl h 31.0 1.1E+02 0.0025 29.2 5.9 80 46-127 57-142 (334)
84 PF01055 Glyco_hydro_31: Glyco 31.0 2.5E+02 0.0055 28.1 8.6 133 110-298 42-180 (441)
85 PRK09593 arb 6-phospho-beta-gl 30.5 1.8E+02 0.0039 30.0 7.5 46 22-67 76-141 (478)
86 cd02932 OYE_YqiM_FMN Old yello 30.0 5.1E+02 0.011 25.0 14.8 131 147-280 63-219 (336)
87 PF14606 Lipase_GDSL_3: GDSL-l 29.6 3.1E+02 0.0066 24.5 7.9 57 223-281 79-136 (178)
88 PRK14330 (dimethylallyl)adenos 29.3 6E+02 0.013 25.5 12.1 77 92-187 250-332 (434)
89 PRK14328 (dimethylallyl)adenos 29.1 6.1E+02 0.013 25.6 11.7 59 109-186 280-338 (439)
90 PRK09852 cryptic 6-phospho-bet 28.8 1.9E+02 0.0041 29.8 7.3 46 22-67 74-139 (474)
91 COG3325 ChiA Chitinase [Carboh 28.5 3.8E+02 0.0083 27.4 9.1 111 44-170 115-246 (441)
92 cd02803 OYE_like_FMN_family Ol 27.8 5.3E+02 0.012 24.5 13.1 131 145-280 61-206 (327)
93 TIGR02026 BchE magnesium-proto 26.5 7.2E+02 0.016 25.5 11.2 127 18-174 221-366 (497)
94 PRK13587 1-(5-phosphoribosyl)- 26.1 4E+02 0.0086 24.6 8.4 70 19-104 31-111 (234)
95 COG1671 Uncharacterized protei 26.0 1.5E+02 0.0033 25.8 5.1 49 37-86 3-67 (150)
96 TIGR00640 acid_CoA_mut_C methy 25.9 1.6E+02 0.0035 24.7 5.3 41 19-59 40-90 (132)
97 PF07799 DUF1643: Protein of u 25.8 75 0.0016 26.5 3.2 26 161-186 32-59 (136)
98 PF00977 His_biosynth: Histidi 25.8 2.1E+02 0.0045 26.2 6.4 70 19-104 29-108 (229)
99 PF03102 NeuB: NeuB family; I 25.5 1.7E+02 0.0036 27.4 5.7 54 23-80 80-136 (241)
100 PTZ00090 40S ribosomal protein 24.8 1.4E+02 0.0031 27.6 4.9 35 24-58 172-210 (233)
101 PRK07198 hypothetical protein; 24.8 64 0.0014 32.6 2.9 37 25-61 338-375 (418)
102 PRK09004 FMN-binding protein M 24.7 4.3E+02 0.0093 22.3 11.4 112 6-130 3-115 (146)
103 PRK08944 motB flagellar motor 24.5 2.5E+02 0.0054 27.2 6.9 73 110-182 141-217 (302)
104 PRK09997 hydroxypyruvate isome 24.4 5.5E+02 0.012 23.4 9.7 50 8-58 5-58 (258)
105 cd00854 NagA N-acetylglucosami 24.3 1.2E+02 0.0027 29.8 4.9 44 18-62 145-194 (374)
106 PTZ00129 40S ribosomal protein 24.1 1.7E+02 0.0036 25.5 5.0 37 22-58 79-128 (149)
107 PRK14114 1-(5-phosphoribosyl)- 22.7 4.4E+02 0.0095 24.5 8.0 70 19-104 30-108 (241)
108 PF01697 Glyco_transf_92: Glyc 22.7 1.5E+02 0.0033 27.3 5.0 55 6-61 2-64 (285)
109 PRK06552 keto-hydroxyglutarate 22.7 5.9E+02 0.013 23.2 10.5 89 19-125 117-210 (213)
110 PRK12702 mannosyl-3-phosphogly 22.6 2.7E+02 0.0058 27.1 6.6 72 27-100 142-235 (302)
111 KOG2775 Metallopeptidase [Gene 21.0 5.5E+02 0.012 25.3 8.2 108 110-247 112-220 (397)
112 cd04723 HisA_HisF Phosphoribos 21.0 5.1E+02 0.011 23.7 8.1 69 20-104 36-113 (233)
113 COG0807 RibA GTP cyclohydrolas 20.9 2E+02 0.0044 26.1 5.1 39 25-63 133-171 (193)
114 COG5016 Pyruvate/oxaloacetate 20.6 1.3E+02 0.0028 30.6 4.1 41 21-61 96-146 (472)
115 PRK14337 (dimethylallyl)adenos 20.6 7.9E+02 0.017 24.9 10.0 138 18-185 176-339 (446)
116 PRK00448 polC DNA polymerase I 20.2 1.9E+02 0.0042 34.1 6.0 46 16-61 347-397 (1437)
117 PRK06925 flagellar motor prote 20.1 4.4E+02 0.0095 24.2 7.4 71 112-182 82-156 (230)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=4.6e-92 Score=675.78 Aligned_cols=310 Identities=53% Similarity=0.964 Sum_probs=256.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCC
Q 041112 7 YGINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPY 86 (342)
Q Consensus 7 ~GvnYg~~~~nlps~~~v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~ 86 (342)
||||||+.++|||+|.+|++|||+++|++||||++|+++|+|++++||+|++||+|+++..+++++.+|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHH
Q 041112 87 LPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPL 166 (342)
Q Consensus 87 ~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ 166 (342)
+|.++|++|+||||++..... ..|+|+|+++|++|+++||+++|||+|+++++++.++||||+|.|++++.++|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999986432 28999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeee
Q 041112 167 LQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSET 246 (342)
Q Consensus 167 ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEt 246 (342)
++||.+++||||+|+||||+|.++|..++|+||+|+++..+.| ++++|+||||+|+|++++||+++|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D--~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVD--GGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEE--TTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCcccccccccccccc--cchhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 9999999999999999999999999999999999999887775 48899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecCCCCCCCCCCcceeeeeCCCceeEeeee
Q 041112 247 GWASRGDENEAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNENLKPGPTSERNFGLFKADGSIAYEIGF 326 (342)
Q Consensus 247 GWPs~G~~~~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 326 (342)
||||+|+. +|+++||++|++|+++|+. .|||+||+..+++||||||||+||+++.+|||||||++||+|||+|+|
T Consensus 236 GWPs~G~~---~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGDP---GATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSST---TCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCCC---CCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 99999993 6899999999999999986 799999999999999999999999987899999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-46 Score=342.45 Aligned_cols=252 Identities=25% Similarity=0.325 Sum_probs=198.9
Q ss_pred CCceeEEecCCCCC--CCCHHHHHHHHHh-CCcC-EEEEecCCh----HHHHHhhcCCCEEEEEeCCcccchhhhhHHHH
Q 041112 4 SGTYGINYGRIADN--IPSPESVVTLLKA-AKIK-NIRIYDADQ----AVLKAFSGSGIEIIVGLGNENLKDISVGEDRA 75 (342)
Q Consensus 4 ~~~~GvnYg~~~~n--lps~~~v~~llks-~~~~-~VRiY~~d~----~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A 75 (342)
.+..+||||++.++ ||+.++|..+|.. .+++ .||+|++|| +|++|+...|++|+||||..+- +. .+.
T Consensus 43 ~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd--~~---~~~ 117 (305)
T COG5309 43 SGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDD--IH---DAV 117 (305)
T ss_pred ccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccc--hh---hhH
Confidence 34689999999888 7999999766643 2333 999999997 5789999999999999997541 21 122
Q ss_pred HHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCcccc
Q 041112 76 MNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVF 155 (342)
Q Consensus 76 ~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f 155 (342)
+.-+...++++...+.|++|+||||+|+|++ ..+++|+.+|..+|.+|+.+|++ +||+|+++|.++.+
T Consensus 118 ~~til~ay~~~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~--------- 185 (305)
T COG5309 118 EKTILSAYLPYNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN--------- 185 (305)
T ss_pred HHHHHHHHhccCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC---------
Confidence 2234555778877789999999999999976 56999999999999999999997 47899999999876
Q ss_pred chhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhC
Q 041112 156 REDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAG 235 (342)
Q Consensus 156 ~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g 235 (342)
++.+|...|| +|+|.||||+.+...+ + .+ .++-.|++-++++ +
T Consensus 186 ----np~l~~~SDf-------ia~N~~aYwd~~~~a~----------------~-----~~-~f~~~q~e~vqsa----~ 228 (305)
T COG5309 186 ----NPELCQASDF-------IAANAHAYWDGQTVAN----------------A-----AG-TFLLEQLERVQSA----C 228 (305)
T ss_pred ----ChHHhhhhhh-------hhcccchhccccchhh----------------h-----hh-HHHHHHHHHHHHh----c
Confidence 1455655555 5899999998643321 0 01 2344456666554 3
Q ss_pred CCCCcEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecCCCCC-CC-CCCccee
Q 041112 236 FPKMDVIVSETGWASRGDENE-AGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNENLKP-GP-TSERNFG 312 (342)
Q Consensus 236 ~~~~~ivVtEtGWPs~G~~~~-~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe~wK~-g~-~~E~~wG 312 (342)
..++.++|+||||||.|..++ +.||++||++|+++++|.+++ + ++++|+||+|||+||. |. ++|+|||
T Consensus 229 g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-~--------G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 229 GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-C--------GYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-c--------CccEEEeeeccccccCccccchhhcee
Confidence 345999999999999999886 679999999999999999873 3 5899999999999997 44 7999999
Q ss_pred eeeCCC
Q 041112 313 LFKADG 318 (342)
Q Consensus 313 lf~~d~ 318 (342)
++..++
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 998874
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.11 E-value=2.1e-08 Score=97.56 Aligned_cols=246 Identities=14% Similarity=0.203 Sum_probs=125.3
Q ss_pred HHHHHHHHHhCCcCEEEE--e-cC-C---h---H---HHHHhhcCCCEEEEEeCCcc---------cc------hhhhhH
Q 041112 21 PESVVTLLKAAKIKNIRI--Y-DA-D---Q---A---VLKAFSGSGIEIIVGLGNEN---------LK------DISVGE 72 (342)
Q Consensus 21 ~~~v~~llks~~~~~VRi--Y-~~-d---~---~---vL~A~~~~gi~v~vGv~n~~---------l~------~la~~~ 72 (342)
..+++++||..|++.||+ | ++ + + . +.+.++..|++|+|-.--.| ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 367899999999986665 4 21 1 1 2 34566789999999882111 11 111111
Q ss_pred HHHHHHHHHhccCCC-CCceEEEEEeeeeeecC-----CCcchHHHHHHHHHHHHHHHHHcCCCCceEEecccccccccc
Q 041112 73 DRAMNWIKANVDPYL-PGTKIRGIAVGNEILGG-----TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFAN 146 (342)
Q Consensus 73 ~~A~~wv~~~v~~~~-~~~~I~~I~VGNE~l~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~ 146 (342)
++..++.++-+...- -+..++.|-||||.-.+ +...-.+.+...++.-.+++|+.+-+-+|-|-.+...+
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~---- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD---- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS----
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc----
Confidence 222333333222211 23678999999997432 12234677888888888888875443233222221110
Q ss_pred CCCCCccccchhhhHHhHHHHHHhhhcC---CCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHH
Q 041112 147 SFPPSACVFREDVSQFMKPLLQFFSQIG---SPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAM 223 (342)
Q Consensus 147 s~pPS~g~f~~~~~~~~~~~ldfl~~~~---s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~ 223 (342)
...+.-..+-|.+.+ |.++++.||||... + +.+...
T Consensus 182 -------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-------l---------------------~~l~~~ 220 (332)
T PF07745_consen 182 -------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-------L---------------------EDLKNN 220 (332)
T ss_dssp -------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST--------H---------------------HHHHHH
T ss_pred -------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-------H---------------------HHHHHH
Confidence 122334444454444 88999999999730 0 112233
Q ss_pred HHHHHHHHHHhCCCCCcEEEeeeccCCCCC-----CCC---------CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCe
Q 041112 224 VDAAYAALEKAGFPKMDVIVSETGWASRGD-----ENE---------AGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPV 289 (342)
Q Consensus 224 ~da~~~a~~~~g~~~~~ivVtEtGWPs~G~-----~~~---------~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~ 289 (342)
++.+ .++ | +|+|+|.|||||..-. .+. ..+|++.|+.|.+.+++.+.+-.+ +..+
T Consensus 221 l~~l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~ 289 (332)
T PF07745_consen 221 LNDL---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGL 289 (332)
T ss_dssp HHHH---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEE
T ss_pred HHHH---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeE
Confidence 3333 233 3 5899999999999821 111 126899999999999999875211 1356
Q ss_pred eEEEEEee-cCCC-----CCCCCCCcceeeeeCCCceeEe
Q 041112 290 KAYIFALF-NENL-----KPGPTSERNFGLFKADGSIAYE 323 (342)
Q Consensus 290 ~~y~F~~F-De~w-----K~g~~~E~~wGlf~~d~~~ky~ 323 (342)
-+|+-|-. -..+ ..|...|.. +||+.+|++--.
T Consensus 290 GvfYWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~s 328 (332)
T PF07745_consen 290 GVFYWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPS 328 (332)
T ss_dssp EEEEE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GG
T ss_pred EEEeeccccccCCcccccCCCCCcccc-ccCCCCCCCchH
Confidence 67766522 1111 233345555 899988876543
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.75 E-value=3.6e-07 Score=87.47 Aligned_cols=155 Identities=23% Similarity=0.431 Sum_probs=83.6
Q ss_pred eeEEecCCCC-------C-CCCHHH---HHHHHHhCCcCEEEEecCCh-----HHHHHhhcCCCEEEEEeCCcccchhhh
Q 041112 7 YGINYGRIAD-------N-IPSPES---VVTLLKAAKIKNIRIYDADQ-----AVLKAFSGSGIEIIVGLGNENLKDISV 70 (342)
Q Consensus 7 ~GvnYg~~~~-------n-lps~~~---v~~llks~~~~~VRiY~~d~-----~vL~A~~~~gi~v~vGv~n~~l~~la~ 70 (342)
.||.|-+-++ + |-.++. -+.+||.+|+..||+|..|| .-+++|+..||=|++.|.... .++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-ccccC
Confidence 6999988766 2 223332 24688999999999998875 458999999999999996432 11211
Q ss_pred hHHHHHHH----------HHHhccCCCCCceEEEEEeeeeeecCC-CcchHHHHHHHHHHHHHHHHHcCCCCceEEeccc
Q 041112 71 GEDRAMNW----------IKANVDPYLPGTKIRGIAVGNEILGGT-DLELSEVLLPAAKNVYSALERLGLAKLIEVSSPH 139 (342)
Q Consensus 71 ~~~~A~~w----------v~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~ 139 (342)
.. -+..| +-+....| .++-+..+|||++... ....++.+-.+++.+|+-+++.++. +|+|+-+-
T Consensus 109 ~~-P~~sw~~~l~~~~~~vid~fa~Y---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa 183 (314)
T PF03198_consen 109 SD-PAPSWNTDLLDRYFAVIDAFAKY---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA 183 (314)
T ss_dssp TS-------HHHHHHHHHHHHHHTT----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE
T ss_pred CC-CcCCCCHHHHHHHHHHHHHhccC---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc
Confidence 11 11123 33334444 6889999999999753 3345789999999999999999985 58888542
Q ss_pred cccccccCCCCCccccchhhhHHhHHHHHHhh-----hcCCCeEeecCCC
Q 041112 140 SEAVFANSFPPSACVFREDVSQFMKPLLQFFS-----QIGSPFYINAYPF 184 (342)
Q Consensus 140 ~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~-----~~~s~~~vNiyPy 184 (342)
+ ++ .+.-.++.+||. +..|.+++|.|-+
T Consensus 184 a-D~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 184 A-DD----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp --------------------TTTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred c-CC----------------hhHHHHHHHHhcCCCcccccceeeecccee
Confidence 1 11 112234555554 3447889999865
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=8e-06 Score=77.42 Aligned_cols=249 Identities=16% Similarity=0.286 Sum_probs=134.3
Q ss_pred HHHHHHHHHhCCcCEEEE--e----cCC--------hH------HHHHhhcCCCEEEEEeCCccc---chhhhhHHHHHH
Q 041112 21 PESVVTLLKAAKIKNIRI--Y----DAD--------QA------VLKAFSGSGIEIIVGLGNENL---KDISVGEDRAMN 77 (342)
Q Consensus 21 ~~~v~~llks~~~~~VRi--Y----~~d--------~~------vL~A~~~~gi~v~vGv~n~~l---~~la~~~~~A~~ 77 (342)
+++..+.||.+|+..||+ | |.| ++ +-+.+++.|+||++-.--.|. +.-..-+ ..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kP---ka 141 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKP---KA 141 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCc---HH
Confidence 467789999999986665 4 333 23 334556789999998732221 0000001 11
Q ss_pred H-------HHHhccCC--------C-CCceEEEEEeeeeeecC-----CCcchHHHHHHHHHHHHHHHHHcCCCCceEEe
Q 041112 78 W-------IKANVDPY--------L-PGTKIRGIAVGNEILGG-----TDLELSEVLLPAAKNVYSALERLGLAKLIEVS 136 (342)
Q Consensus 78 w-------v~~~v~~~--------~-~~~~I~~I~VGNE~l~~-----~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVs 136 (342)
| ++..|-.| . -+..+..|=||||.-.. +...-...+...++.--+++|.. +..|||-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEE
Confidence 2 12222111 1 13567889999997422 22212455555566666666653 2346654
Q ss_pred ccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccccccccccCCceecCCCCccc
Q 041112 137 SPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHY 216 (342)
Q Consensus 137 T~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y 216 (342)
-- |.+ |-..+.|+--...+-+.-+|| |.|.+--||||...-+ . .
T Consensus 220 lH-----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------n--L 263 (403)
T COG3867 220 LH-----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------N--L 263 (403)
T ss_pred EE-----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------H--H
Confidence 32 222 222334431111222333333 5788899999975211 0 1
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCcEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 041112 217 DNMFDAMVDAAYAALEKAGFPKMDVIVSETGW--------------ASRGDENEAGANVKNAKIYNKNLRKRLLKKKGTP 282 (342)
Q Consensus 217 ~n~fda~~da~~~a~~~~g~~~~~ivVtEtGW--------------Ps~G~~~~~~as~~na~~y~~~~i~~~~~~~Gtp 282 (342)
++.++++-+ + =+|+|+|.||+. |+.+...+-..+++.|.+|.+++|..+.+ .|
T Consensus 264 ~~nl~dia~-------r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp 330 (403)
T COG3867 264 TTNLNDIAS-------R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VP 330 (403)
T ss_pred HhHHHHHHH-------H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CC
Confidence 111221211 1 258999999998 66654322346789999999999998864 22
Q ss_pred CCCCCCeeEEEEE-------------------eecCCCCCCCCCCcceeeeeCCCceeEeeee
Q 041112 283 YRPKKPVKAYIFA-------------------LFNENLKPGPTSERNFGLFKADGSIAYEIGF 326 (342)
Q Consensus 283 ~rp~~~~~~y~F~-------------------~FDe~wK~g~~~E~~wGlf~~d~~~ky~l~~ 326 (342)
.- +++-+|+.| .-.|+|+.|..++.. -||+.+|.|--+|+.
T Consensus 331 ~~--~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~v 390 (403)
T COG3867 331 KS--NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLNV 390 (403)
T ss_pred CC--CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchhh
Confidence 21 234455544 223566655433333 578888877776654
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.03 E-value=0.00086 Score=62.44 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=80.4
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCcCEEEEecC-------------Ch-------HHHHHhhcCCCEEEEEeCCc--
Q 041112 6 TYGINYGRIADNIPSPESVVTLLKAAKIKNIRIYDA-------------DQ-------AVLKAFSGSGIEIIVGLGNE-- 63 (342)
Q Consensus 6 ~~GvnYg~~~~nlps~~~v~~llks~~~~~VRiY~~-------------d~-------~vL~A~~~~gi~v~vGv~n~-- 63 (342)
..|+|-- ..+.. ..++.++.+++.|++.|||.-. +. .+|++++..||.|+|.+...
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466655 22222 6788899999999999999721 11 47889999999999988653
Q ss_pred ---ccchhhhhHHHHHHHHHH----hccCCCCCceEEEEEeeeeeecCCCc-----chHHHHHHHHHHHHHHHHHcCCCC
Q 041112 64 ---NLKDISVGEDRAMNWIKA----NVDPYLPGTKIRGIAVGNEILGGTDL-----ELSEVLLPAAKNVYSALERLGLAK 131 (342)
Q Consensus 64 ---~l~~la~~~~~A~~wv~~----~v~~~~~~~~I~~I~VGNE~l~~~~~-----~~~~~Lv~am~~v~~aL~~~gl~~ 131 (342)
.-.... .......|+.. -...|-....|.++=+.||+...... .....+.+.++.+.+++++.+-+.
T Consensus 88 w~~~~~~~~-~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYG-NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTT-THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccc-cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 001111 11222222221 12222133457799999999875321 124778899999999999998875
Q ss_pred ceEEec
Q 041112 132 LIEVSS 137 (342)
Q Consensus 132 ~IkVsT 137 (342)
.|-|+.
T Consensus 167 ~i~~~~ 172 (281)
T PF00150_consen 167 LIIVGG 172 (281)
T ss_dssp EEEEEE
T ss_pred eeecCC
Confidence 454444
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.96 E-value=0.0045 Score=65.15 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=136.2
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCcCEEEEec--CChHHHHHhhcCCCEEEEEeCCcc--------------
Q 041112 7 YGINYGRIA---DNIPSPESV---VTLLKAAKIKNIRIYD--ADQAVLKAFSGSGIEIIVGLGNEN-------------- 64 (342)
Q Consensus 7 ~GvnYg~~~---~nlps~~~v---~~llks~~~~~VRiY~--~d~~vL~A~~~~gi~v~vGv~n~~-------------- 64 (342)
.|+|+=... ...++.+.+ +++||..|++.||+-. .++..+.+|...||-|+.=++...
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 588873221 112444443 5678999999999943 357899999999998886443210
Q ss_pred -cchhh------hhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEEec
Q 041112 65 -LKDIS------VGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEVSS 137 (342)
Q Consensus 65 -l~~la------~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT 137 (342)
-.... ........-++..|..+...-.|..=++|||.-... ......++.+.+.+++.--+. +|+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~DptR--~vt~ 447 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDPTR--PVTC 447 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCCCC--ceEE
Confidence 00010 011222333555566654445688999999974321 122344455555555543322 3444
Q ss_pred cccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccc
Q 041112 138 PHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYD 217 (342)
Q Consensus 138 ~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~ 217 (342)
+..+. . +|.. ..+.+++| .+..|.|+=|- .+.... . ...
T Consensus 448 ~~~~~---~--~~~~--------~~~~~~~D-------v~~~N~Y~~wy--~~~~~~----~---------------~~~ 486 (604)
T PRK10150 448 VNVMF---A--TPDT--------DTVSDLVD-------VLCLNRYYGWY--VDSGDL----E---------------TAE 486 (604)
T ss_pred Eeccc---C--Cccc--------ccccCccc-------EEEEcccceec--CCCCCH----H---------------HHH
Confidence 32110 0 1100 01122344 44688764221 010000 0 001
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEE
Q 041112 218 NMFDAMVDAAYAALEKAGFPKMDVIVSETGWASRGDEN---EAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIF 294 (342)
Q Consensus 218 n~fda~~da~~~a~~~~g~~~~~ivVtEtGWPs~G~~~---~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F 294 (342)
..++..++.. .+ .+ ++|++++|.|+.+.-+.. ...-|.+.|..|++...+.+.+ +|. -.-.|+.
T Consensus 487 ~~~~~~~~~~----~~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW 553 (604)
T PRK10150 487 KVLEKELLAW----QE-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVW 553 (604)
T ss_pred HHHHHHHHHH----HH-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEE
Confidence 1122222211 11 13 799999999986642211 1124678888888776665542 232 4568999
Q ss_pred EeecCCCCCCC--CCCcceeeeeCCCceeEee
Q 041112 295 ALFNENLKPGP--TSERNFGLFKADGSIAYEI 324 (342)
Q Consensus 295 ~~FDe~wK~g~--~~E~~wGlf~~d~~~ky~l 324 (342)
.+||-....|. --..+.||++.||+||-..
T Consensus 554 ~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 554 NFADFATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred eeeccCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 99996555431 1224789999999999654
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.56 E-value=0.017 Score=54.17 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=51.5
Q ss_pred HHHhCCCCCcEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecC-CCCCCCCCCc
Q 041112 231 LEKAGFPKMDVIVSETGWASRGDENEAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNE-NLKPGPTSER 309 (342)
Q Consensus 231 ~~~~g~~~~~ivVtEtGWPs~G~~~~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe-~wK~g~~~E~ 309 (342)
|++.+--+++|+|||.+-|..+ +++.|+.+++.++..+.+. |. -..+++..+.|. .|.++ .
T Consensus 175 l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p~----v~gi~~Wg~~d~~~W~~~----~ 236 (254)
T smart00633 175 LDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---PA----VTGVTVWGVTDKYSWLDG----G 236 (254)
T ss_pred HHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---CC----eeEEEEeCCccCCcccCC----C
Confidence 3434434799999999998753 3478888999999888752 21 234556666653 45542 4
Q ss_pred ceeeeeCCCceeEe
Q 041112 310 NFGLFKADGSIAYE 323 (342)
Q Consensus 310 ~wGlf~~d~~~ky~ 323 (342)
+-|||+.|++||-.
T Consensus 237 ~~~L~d~~~~~kpa 250 (254)
T smart00633 237 APLLFDANYQPKPA 250 (254)
T ss_pred CceeECCCCCCChh
Confidence 67999999988853
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.17 E-value=0.072 Score=50.88 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred ceeEEecCCCCC---CCCHHHH---HHHHHhCCcCEEEEec--CChHHHHHhhcCCCEEEEEeCCccc---chh------
Q 041112 6 TYGINYGRIADN---IPSPESV---VTLLKAAKIKNIRIYD--ADQAVLKAFSGSGIEIIVGLGNENL---KDI------ 68 (342)
Q Consensus 6 ~~GvnYg~~~~n---lps~~~v---~~llks~~~~~VRiY~--~d~~vL~A~~~~gi~v~vGv~n~~l---~~l------ 68 (342)
..|||+.....- .++.+.+ ++++|+.|++.||+.. .++..+.+|...||-|+..++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 369998764322 3455555 4678999999999963 3579999999999999988765110 000
Q ss_pred h---hhHHHHHHHHHHhccCCCCCceEEEEEeeeee
Q 041112 69 S---VGEDRAMNWIKANVDPYLPGTKIRGIAVGNEI 101 (342)
Q Consensus 69 a---~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~ 101 (342)
. ...+.+...++..|..+...-.|-.=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0 11122333444455554433457788899999
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.90 E-value=0.09 Score=48.98 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=91.2
Q ss_pred ceEEEEEeeeeeecCCC-cchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHH
Q 041112 90 TKIRGIAVGNEILGGTD-LELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQ 168 (342)
Q Consensus 90 ~~I~~I~VGNE~l~~~~-~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ld 168 (342)
..++.|..=||+=.... ...+++.+...+++.+.|+. ..+|+..|.... .+..+|+.. +-|...++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~--~~~~~~~g~-------~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAF--TNGGTPGGL-------DWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecc--cCCCCCCcc-------HHHHHHHH
Confidence 46789999999865422 12367777777776666663 347777764211 100011111 23444333
Q ss_pred HhhhcCCCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeecc
Q 041112 169 FFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETGW 248 (342)
Q Consensus 169 fl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtGW 248 (342)
-+...+.+=.+++|.| . .+. .-|...++.++ ++.| +||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y-~--~~~--------------------------~~~~~~i~~~~---~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY-G--GDA--------------------------DDFKDYIDDLH---NRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC-C--cCH--------------------------HHHHHHHHHHH---HHhC---CCEEEEeecc
Confidence 3321122223445555 1 000 01233444333 3333 9999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecCCCCCCCCCCcceeeeeCCCce
Q 041112 249 ASRGDENEAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNENLKPGPTSERNFGLFKADGSI 320 (342)
Q Consensus 249 Ps~G~~~~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d~~~ 320 (342)
...+. ..+.+.++.|.+..+..+.+. | . -..++||...+ .+. .....-.|++.+|++
T Consensus 176 ~~~~~----~~~~~~~~~fl~~~~~~ld~~---~---~-VeryawF~~~~-~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WNGGS----QGSDEQQASFLRQALPWLDSQ---P---Y-VERYAWFGFMN-DGS---GVNPNSALLDADGSL 232 (239)
T ss_pred cCCCC----CCCHHHHHHHHHHHHHHHhcC---C---C-eeEEEeccccc-ccC---CCccccccccCCCCc
Confidence 77322 478889999999999888542 1 1 33577888333 222 245556677777643
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=88.58 E-value=0.32 Score=49.55 Aligned_cols=283 Identities=14% Similarity=0.155 Sum_probs=129.2
Q ss_pred HHHHHHHHhCCcCEEEEec------C-------Ch-------HHHHHhhcCCCEEEEEeCCcccchhhh------hHHHH
Q 041112 22 ESVVTLLKAAKIKNIRIYD------A-------DQ-------AVLKAFSGSGIEIIVGLGNENLKDISV------GEDRA 75 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~------~-------d~-------~vL~A~~~~gi~v~vGv~n~~l~~la~------~~~~A 75 (342)
++-++|||+.|++..|+-= + |+ ++|..|...||+.+|.+.--+++..-. +...+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 4568899999999999751 1 21 588999999999999997545443111 11111
Q ss_pred HH---HHHHhccCCCCCceEEEEEeeeeeecC------CC---c--c-------hHHHHHHHHHHHHHHHHHcCCCCceE
Q 041112 76 MN---WIKANVDPYLPGTKIRGIAVGNEILGG------TD---L--E-------LSEVLLPAAKNVYSALERLGLAKLIE 134 (342)
Q Consensus 76 ~~---wv~~~v~~~~~~~~I~~I~VGNE~l~~------~~---~--~-------~~~~Lv~am~~v~~aL~~~gl~~~Ik 134 (342)
+. ..+.-+..| +++|++-+.=||...- .. + . ....++-|-..+.+++++..-+ .+
T Consensus 141 ~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~--~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD--GK 216 (455)
T ss_dssp HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT--SE
T ss_pred HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc--eE
Confidence 11 111112222 2568888889997521 00 0 0 1233555555666677776644 45
Q ss_pred Eecccccccccc--CCCCC---------------------ccccchhhhHHh----------HHHHHHhhhcCCCeEeec
Q 041112 135 VSSPHSEAVFAN--SFPPS---------------------ACVFREDVSQFM----------KPLLQFFSQIGSPFYINA 181 (342)
Q Consensus 135 VsT~~~~~vl~~--s~pPS---------------------~g~f~~~~~~~~----------~~~ldfl~~~~s~~~vNi 181 (342)
|+.++......- ..++. .|.|...+...+ ..-+..|..+.|++++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 666554432210 00110 111111111111 011233456679999998
Q ss_pred CCCccccCCCC-ccccccc---ccccC---CceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCC
Q 041112 182 YPFLAYKNDPE-HIDLNYA---TFKSN---RGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETGWASRGDE 254 (342)
Q Consensus 182 yPyf~~~~~~~-~~~~~ya---lf~~~---~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtGWPs~G~~ 254 (342)
|.=.--...+. .....+. .+... .......+-..|..-+-.++.- +. .-|++++|+|||.|++.....
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~----l~-~~Y~~~pI~ITENG~~~~~~~ 371 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRY----LK-DRYGNPPIYITENGIGDPDEV 371 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHH----HH-HHHTSSEEEEEEE---EETTC
T ss_pred ccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhh----hc-cccCCCcEEEecccccccccc
Confidence 74322222210 1111111 01000 0000001111122222222221 11 126789999999999887653
Q ss_pred CCCCCC-----HHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecCCCCCCCCCCcceeeeeCC------CceeE
Q 041112 255 NEAGAN-----VKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNENLKPGPTSERNFGLFKAD------GSIAY 322 (342)
Q Consensus 255 ~~~~as-----~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wGlf~~d------~~~ky 322 (342)
.. +.- ++--+.++..+.+.+. .|-+. .-+|..++.| ++--+.+..+.|||++-| |+||-
T Consensus 372 ~~-~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V-----~GY~~WSl~D-n~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~ 441 (455)
T PF00232_consen 372 DD-GKVDDDYRIDYLQDHLNQVLKAIE--DGVNV-----RGYFAWSLLD-NFEWAEGYKKRFGLVYVDFFDTLKRTPKK 441 (455)
T ss_dssp TT-SHBSHHHHHHHHHHHHHHHHHHHH--TT-EE-----EEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBH
T ss_pred cc-cCcCcHHHHHHHHHHHHHHHhhhc--cCCCe-----eeEeeecccc-ccccccCccCccCceEEcCCCCcCeeecc
Confidence 22 111 1222445555445442 44432 3577778877 333233589999999999 66663
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=81.25 E-value=6.3 Score=39.95 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=43.4
Q ss_pred CCCCcEEEeeeccCCCCCCC-CCC---CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecC-CCCCCCCCCcc
Q 041112 236 FPKMDVIVSETGWASRGDEN-EAG---ANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNE-NLKPGPTSERN 310 (342)
Q Consensus 236 ~~~~~ivVtEtGWPs~G~~~-~~~---as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~ 310 (342)
|++.+|+|||.|+....... +.. -=++--+.+++.+.+.+. .|-+. .-++.-++.|- .|.. +..+.
T Consensus 335 Y~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~--dGv~v-----~GY~~Wsl~Dn~ew~~--gy~~r 405 (427)
T TIGR03356 335 YPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIE--EGVDV-----RGYFVWSLLDNFEWAE--GYSKR 405 (427)
T ss_pred cCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHH--CCCCE-----EEEEecccccccchhc--ccccc
Confidence 55668999999997543211 000 012222344444444432 45543 34777788873 3433 48999
Q ss_pred eeeeeCCCc
Q 041112 311 FGLFKADGS 319 (342)
Q Consensus 311 wGlf~~d~~ 319 (342)
|||++-|..
T Consensus 406 fGl~~VD~~ 414 (427)
T TIGR03356 406 FGLVHVDYE 414 (427)
T ss_pred cceEEECCC
Confidence 999999865
No 13
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=81.22 E-value=6.4 Score=38.89 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=59.0
Q ss_pred CcCEEEEecC-ChHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchH
Q 041112 32 KIKNIRIYDA-DQAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELS 110 (342)
Q Consensus 32 ~~~~VRiY~~-d~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~ 110 (342)
.+++|-+|+. +++++..+...|++|++..... ...++ ++..-..++++-| .+...-.+.+|-+==|-....+....
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~-~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQIS-NPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcC-CHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 4788888864 7899999999999999864321 12232 4333334443322 12211234555554443322112235
Q ss_pred HHHHHHHHHHHHHHHHcCCCCceEEe
Q 041112 111 EVLLPAAKNVYSALERLGLAKLIEVS 136 (342)
Q Consensus 111 ~~Lv~am~~v~~aL~~~gl~~~IkVs 136 (342)
..++..|+.+|++|++.+.+-.+.|.
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 67889999999999987643234333
No 14
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=76.93 E-value=9.4 Score=27.75 Aligned_cols=43 Identities=37% Similarity=0.446 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCC-----hHHHHHhhcCCCEEEEEeC
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDAD-----QAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d-----~~vL~A~~~~gi~v~vGv~ 61 (342)
-+++++++.++.+|++.|=+=|-+ +...+.++..||+++.|+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 467899999999999999888776 3556777789999999985
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=70.56 E-value=15 Score=36.33 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCcCEEEEecC-------C---------hHHHHHhhcCCCEEEEEeCCcccc-------------------
Q 041112 22 ESVVTLLKAAKIKNIRIYDA-------D---------QAVLKAFSGSGIEIIVGLGNENLK------------------- 66 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~~-------d---------~~vL~A~~~~gi~v~vGv~n~~l~------------------- 66 (342)
++.+++||..|++.|||-.. . ..+|..++..||+|+|+++....+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 45577888999999998422 1 147888899999999999521100
Q ss_pred -------hhhh-h---HHHHHHHHHHhccCCCCCceEEEEEeeeeeec
Q 041112 67 -------DISV-G---EDRAMNWIKANVDPYLPGTKIRGIAVGNEILG 103 (342)
Q Consensus 67 -------~la~-~---~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 103 (342)
.... + .+.+...++.-+..|-..-.|.++-|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0000 1 12344555554455544457999999999754
No 16
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=70.40 E-value=17 Score=37.26 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcCEEEEec------------CCh-------HHHHHhhcCCCEEEEEeCCcccch
Q 041112 22 ESVVTLLKAAKIKNIRIYD------------ADQ-------AVLKAFSGSGIEIIVGLGNENLKD 67 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~------------~d~-------~vL~A~~~~gi~v~vGv~n~~l~~ 67 (342)
++-++|||+.|++.-|+== .|+ +++.+|...||+-+|.+.--+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 4557899999998887641 122 588999999999999997656553
No 17
>PLN02849 beta-glucosidase
Probab=70.36 E-value=13 Score=38.54 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=45.1
Q ss_pred CCCCcEEEeeeccCCCCCCCCCC---CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecCCCCCCCCCCccee
Q 041112 236 FPKMDVIVSETGWASRGDENEAG---ANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNENLKPGPTSERNFG 312 (342)
Q Consensus 236 ~~~~~ivVtEtGWPs~G~~~~~~---as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe~wK~g~~~E~~wG 312 (342)
|++.||+|||-|++......+.. -=++--+.+++.+.+.+. .|-+. .-+|..++.| ++--..+.++.||
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~D-nfEW~~Gy~~RfG 454 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMD-LYELLKGYEFSFG 454 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchh-hhchhccccCccc
Confidence 56668999999998654311100 112233445554444442 45543 3477778877 3332234899999
Q ss_pred eeeCCCc
Q 041112 313 LFKADGS 319 (342)
Q Consensus 313 lf~~d~~ 319 (342)
|++-|..
T Consensus 455 Li~VD~~ 461 (503)
T PLN02849 455 LYSVNFS 461 (503)
T ss_pred eEEECCC
Confidence 9998764
No 18
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=68.14 E-value=56 Score=37.05 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=59.8
Q ss_pred ceeEEecCC---CCCCCCHHHH---HHHHHhCCcCEEEEec--CChHHHHHhhcCCCEEEEEeCCccc-----chhhhhH
Q 041112 6 TYGINYGRI---ADNIPSPESV---VTLLKAAKIKNIRIYD--ADQAVLKAFSGSGIEIIVGLGNENL-----KDISVGE 72 (342)
Q Consensus 6 ~~GvnYg~~---~~nlps~~~v---~~llks~~~~~VRiY~--~d~~vL~A~~~~gi~v~vGv~n~~l-----~~la~~~ 72 (342)
..|||+-.. .....+++.+ ++++|..|++.||+-. .++..++.|...||=|+--.+.+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 358887532 2223566665 5677999999999953 3578999999999988866542110 0111121
Q ss_pred ---HHHHHHHHHhccCCCCCceEEEEEeeeeee
Q 041112 73 ---DRAMNWIKANVDPYLPGTKIRGIAVGNEIL 102 (342)
Q Consensus 73 ---~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l 102 (342)
++..+-++..|......-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122233444555554445688899999974
No 19
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=67.32 E-value=15 Score=32.39 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=45.3
Q ss_pred HHHHhhcC--CCEEEEEeCCcccc---hhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHH
Q 041112 45 VLKAFSGS--GIEIIVGLGNENLK---DISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKN 119 (342)
Q Consensus 45 vL~A~~~~--gi~v~vGv~n~~l~---~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~ 119 (342)
-++.++.. |++|++.|...... .++++.+..+..+++ +..+...-.+.+|-+==|.....+......++..|+.
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~-~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANS-LVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHH-HHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 45666665 99999998753322 233444333332221 2222211234555554454322111125789999999
Q ss_pred HHHHHHHcCC
Q 041112 120 VYSALERLGL 129 (342)
Q Consensus 120 v~~aL~~~gl 129 (342)
+|++|.+.++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999987654
No 20
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.63 E-value=24 Score=35.18 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=37.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 041112 216 YDNMFDAMVDAAYAALEKAGFPKMDVIVSETGWASRGDENE---AGANVKNAKIYNKNLRKRLLK 277 (342)
Q Consensus 216 y~n~fda~~da~~~a~~~~g~~~~~ivVtEtGWPs~G~~~~---~~as~~na~~y~~~~i~~~~~ 277 (342)
|.|-|++.+--......-.|++..+|+.| |||.|.-.+ ...|..-++.-+.++++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 55666655544433445567788888886 999998532 235555566666777777764
No 21
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=63.86 E-value=80 Score=29.24 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCEEEEEeCCccc---chhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHH
Q 041112 44 AVLKAFSGSGIEIIVGLGNENL---KDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNV 120 (342)
Q Consensus 44 ~vL~A~~~~gi~v~vGv~n~~l---~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v 120 (342)
..+++++..|+||++.|.+... ..+.++....+.++++ +..+...-.+.+|-+==|-... . ....+..|+.+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 4567778789999998865432 2233344433333332 2222111124455555454422 1 35677889999
Q ss_pred HHHHHHcCC
Q 041112 121 YSALERLGL 129 (342)
Q Consensus 121 ~~aL~~~gl 129 (342)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987665
No 22
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=63.42 E-value=67 Score=36.43 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=58.3
Q ss_pred eeEEecCCC---CCCCCHHHH---HHHHHhCCcCEEEEec--CChHHHHHhhcCCCEEEEEeCCcc--------cchhhh
Q 041112 7 YGINYGRIA---DNIPSPESV---VTLLKAAKIKNIRIYD--ADQAVLKAFSGSGIEIIVGLGNEN--------LKDISV 70 (342)
Q Consensus 7 ~GvnYg~~~---~nlps~~~v---~~llks~~~~~VRiY~--~d~~vL~A~~~~gi~v~vGv~n~~--------l~~la~ 70 (342)
.|+|+-... ....+++.+ +++||+.|+..||+.. .++..+.+|...||=|+--++.+. ...+..
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 588864321 122455554 5688999999999864 246789999999998877542110 001111
Q ss_pred hH---HHHHHHHHHhccCCCCCceEEEEEeeeeeec
Q 041112 71 GE---DRAMNWIKANVDPYLPGTKIRGIAVGNEILG 103 (342)
Q Consensus 71 ~~---~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 103 (342)
++ ++..+-++..|..+...-.|..=++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 21 1222334555555543456888889999843
No 23
>PLN02998 beta-glucosidase
Probab=62.97 E-value=23 Score=36.68 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=44.9
Q ss_pred CCCCcEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecC-CCCCCCCCCcceee
Q 041112 236 FPKMDVIVSETGWASRGDEN-EAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNE-NLKPGPTSERNFGL 313 (342)
Q Consensus 236 ~~~~~ivVtEtGWPs~G~~~-~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wGl 313 (342)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|-+. .-+|.-++.|- .|.. +.++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~--Gy~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFG--GYERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhc--cccCccce
Confidence 55568999999998653110 000112334555555555553 45443 34777788872 3444 48999999
Q ss_pred eeCCCc
Q 041112 314 FKADGS 319 (342)
Q Consensus 314 f~~d~~ 319 (342)
++-|..
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998754
No 24
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=61.73 E-value=12 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=27.3
Q ss_pred HHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 24 VVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 24 v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
-+|.|+..|+++||+.+.+|.=+.++.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36899999999999999999999999999999975544
No 25
>PLN02814 beta-glucosidase
Probab=57.39 E-value=36 Score=35.38 Aligned_cols=75 Identities=13% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCCcEEEeeeccCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeec-CCCCCCCCCCcceee
Q 041112 236 FPKMDVIVSETGWASRGDEN-EAGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFN-ENLKPGPTSERNFGL 313 (342)
Q Consensus 236 ~~~~~ivVtEtGWPs~G~~~-~~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FD-e~wK~g~~~E~~wGl 313 (342)
|++.+|+|||-|+....+.. ...-=++--+.+++.+.+.+. .|-|. .-+|.-++.| =.|.. +.++.|||
T Consensus 385 Y~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~--dGv~V-----~GY~~WSllDnfEW~~--Gy~~RfGL 455 (504)
T PLN02814 385 YNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIK--NGSDT-----RGYFVWSMIDLYELLG--GYTTSFGM 455 (504)
T ss_pred cCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhc--cccCccce
Confidence 56668999999997543110 000112333445555545543 45543 3477778887 23434 48999999
Q ss_pred eeCCCc
Q 041112 314 FKADGS 319 (342)
Q Consensus 314 f~~d~~ 319 (342)
++.|..
T Consensus 456 vyVD~~ 461 (504)
T PLN02814 456 YYVNFS 461 (504)
T ss_pred EEECCC
Confidence 998764
No 26
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=53.35 E-value=45 Score=34.78 Aligned_cols=83 Identities=11% Similarity=0.197 Sum_probs=54.2
Q ss_pred hCCCCCcEEEeeeccCCCCCCC---C----CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeec-CCCCCCC
Q 041112 234 AGFPKMDVIVSETGWASRGDEN---E----AGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFN-ENLKPGP 305 (342)
Q Consensus 234 ~g~~~~~ivVtEtGWPs~G~~~---~----~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FD-e~wK~g~ 305 (342)
..|+|.+|.|+|-|-+...+.. + ...=++..+.|++.+.+.+.. .|. .-.-+|+.++.| =.|..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~-- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLD-- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhc--
Confidence 3589999999999998875542 1 112345566677776666652 332 123588999887 34555
Q ss_pred CCCcceeeeeC------CCceeEee
Q 041112 306 TSERNFGLFKA------DGSIAYEI 324 (342)
Q Consensus 306 ~~E~~wGlf~~------d~~~ky~l 324 (342)
+..-.||||+- .|.||-+.
T Consensus 475 Gy~~RFGlyyVDf~d~l~R~pK~Sa 499 (524)
T KOG0626|consen 475 GYKVRFGLYYVDFKDPLKRYPKLSA 499 (524)
T ss_pred CcccccccEEEeCCCCCcCCchhHH
Confidence 47899999995 45555543
No 27
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=52.35 E-value=96 Score=30.38 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred HHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCC-----CCceEEEEEeeeeeecCCC--cchHHHHHHHHHH
Q 041112 47 KAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYL-----PGTKIRGIAVGNEILGGTD--LELSEVLLPAAKN 119 (342)
Q Consensus 47 ~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~-----~~~~I~~I~VGNE~l~~~~--~~~~~~Lv~am~~ 119 (342)
+=++.+|++|+.|+.--.-.....+....-.|=.+|.+.++ .+=+|.+-=.|||.-..+- .-.+.++..-...
T Consensus 116 ~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~ 195 (319)
T PF03662_consen 116 NFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQ 195 (319)
T ss_dssp HHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH--
T ss_pred HHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHHHH
Confidence 44557999999999521100101112334578777755542 1235777778999653211 1236888888888
Q ss_pred HHHHHHHc
Q 041112 120 VYSALERL 127 (342)
Q Consensus 120 v~~aL~~~ 127 (342)
+|+.|+..
T Consensus 196 Lr~il~~i 203 (319)
T PF03662_consen 196 LRKILNEI 203 (319)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 88888763
No 28
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.32 E-value=22 Score=31.91 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=30.0
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEE
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEII 57 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~ 57 (342)
.|.|+..|+++||+.+.++.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998877889999999987
No 29
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=51.93 E-value=23 Score=32.06 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=30.3
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEE
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEII 57 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~ 57 (342)
+|.|+..|+++||+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998877889999999997
No 30
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=50.01 E-value=76 Score=29.25 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=24.9
Q ss_pred HHhCCCCCcEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 041112 232 EKAGFPKMDVIVSETGWASRGDENE---AGANVKNAKIYNKNLRKRLLK 277 (342)
Q Consensus 232 ~~~g~~~~~ivVtEtGWPs~G~~~~---~~as~~na~~y~~~~i~~~~~ 277 (342)
..+++++..|+. .|||.|...+ ...+...+......++..+..
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 345677755554 6999998532 123444445555566666553
No 31
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=49.43 E-value=50 Score=34.02 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCcCEEEEec-------------CCh-------HHHHHhhcCCCEEEEEeCCcccc
Q 041112 22 ESVVTLLKAAKIKNIRIYD-------------ADQ-------AVLKAFSGSGIEIIVGLGNENLK 66 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~-------------~d~-------~vL~A~~~~gi~v~vGv~n~~l~ 66 (342)
++-++|||+.|++.-|+=- .++ +++.+|...||+-+|.+.--+++
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 4557899999988877531 132 58899999999999999765655
No 32
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=48.66 E-value=56 Score=29.56 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHh-HHHHHHhhhcCCCeEeecC
Q 041112 114 LPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFM-KPLLQFFSQIGSPFYINAY 182 (342)
Q Consensus 114 v~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~-~~~ldfl~~~~s~~~vNiy 182 (342)
-.+++.+.+.+...|+.| |++.+..... .| + .+.. .++++.+.+.+-|+.+++-
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~------~~-------~-~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGF------DP-------D-DPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTC------CT-------T-SGHCHHHHHHHHHHHT-EEEEEES
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcc------cc-------c-cHHHHHHHHHHHHhhccceeeecc
Confidence 367888888888889875 8877643211 11 1 1223 4899999999988888753
No 33
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=48.38 E-value=1.1e+02 Score=29.95 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=49.3
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccC
Q 041112 6 TYGINYGRIADNIPSPESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDP 85 (342)
Q Consensus 6 ~~GvnYg~~~~nlps~~~v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~ 85 (342)
.+|||.-....+ |..++.++.+...+.+.|=+..-+|...+.++..|++|+.-|+ +...|..+.+..+
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~---------s~~~A~~a~~~Ga-- 124 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP---------SPGLLKQFLENGA-- 124 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC---------CHHHHHHHHHcCC--
Confidence 478887443222 3345566666666777776655566667889999999998887 3344555554322
Q ss_pred CCCCceEEEEEeeeee
Q 041112 86 YLPGTKIRGIAVGNEI 101 (342)
Q Consensus 86 ~~~~~~I~~I~VGNE~ 101 (342)
+ ..|+-|.|.
T Consensus 125 ----D--~vVaqG~EA 134 (320)
T cd04743 125 ----R--KFIFEGREC 134 (320)
T ss_pred ----C--EEEEecCcC
Confidence 2 246779997
No 34
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=48.11 E-value=2.6e+02 Score=27.92 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccc
Q 041112 109 LSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAY 187 (342)
Q Consensus 109 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~ 187 (342)
...+...+++.+|+.. . .+.+++.. +. ++| . |-.+.+...++|+.+.+ +-.+++|||-.+
T Consensus 271 ~~~~~~~~v~~l~~~~--~----gi~i~~~~----Iv-G~P-g------ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 271 TRDDFLKLVNKLRSVR--P----DYAFGTDI----IV-GFP-G------ESEEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred CHHHHHHHHHHHHHhC--C----CCeeeeeE----EE-ECC-C------CCHHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 3567777777777642 1 24455542 21 233 1 22366788899998765 456788887554
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=48.00 E-value=1.9e+02 Score=25.30 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCEEEEEeCCcc--c--chhhhhHHHHHHHHHHhccC-CCCCceEEEEEeeeeeecCCCcchHHHHHHHHH
Q 041112 44 AVLKAFSGSGIEIIVGLGNEN--L--KDISVGEDRAMNWIKANVDP-YLPGTKIRGIAVGNEILGGTDLELSEVLLPAAK 118 (342)
Q Consensus 44 ~vL~A~~~~gi~v~vGv~n~~--l--~~la~~~~~A~~wv~~~v~~-~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~ 118 (342)
.+|+++...||+|.+|++.+. - ..++.....+ .-+...+.. |.....+.+--+-.|.=... -...++.+
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~-~~v~~el~~~yg~h~sf~GWYip~E~~~~~-----~~~~~~~~ 142 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERN-KQVADELWQRYGHHPSFYGWYIPYEIDDYN-----WNAPERFA 142 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHH-HHHHHHHHHHHcCCCCCceEEEecccCCcc-----cchHHHHH
Confidence 478999999999999998541 1 1111111100 112222222 22123567777777774321 22355556
Q ss_pred HHHHHHHHcCCCCceEEe
Q 041112 119 NVYSALERLGLAKLIEVS 136 (342)
Q Consensus 119 ~v~~aL~~~gl~~~IkVs 136 (342)
.+.+.|++..=+.+|-||
T Consensus 143 ~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 143 LLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHhCCCCCeEEe
Confidence 666666654333344443
No 36
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=47.01 E-value=46 Score=27.14 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCcCEEEEe--cCC---hHHHHHhhcCCCEEEE
Q 041112 22 ESVVTLLKAAKIKNIRIY--DAD---QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY--~~d---~~vL~A~~~~gi~v~v 58 (342)
+++.+.++.+|++.|+++ +.. ..+|++++..|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345567778999999888 333 3789999999998654
No 37
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=46.80 E-value=2.3e+02 Score=29.51 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHhccCCCC-CceEEEEEeeeeeecC------CCcc--hHHHHHHHHHH-HHHHHHHcCCCCceEEec
Q 041112 78 WIKANVDPYLP-GTKIRGIAVGNEILGG------TDLE--LSEVLLPAAKN-VYSALERLGLAKLIEVSS 137 (342)
Q Consensus 78 wv~~~v~~~~~-~~~I~~I~VGNE~l~~------~~~~--~~~~Lv~am~~-v~~aL~~~gl~~~IkVsT 137 (342)
.+.+-|+.|-. +..|-+|++.||+... ++.. .+.++...|++ +.-+|+++|++..+|+-.
T Consensus 209 Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 209 YFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 34444555532 4789999999999852 2211 26777888876 999999999965677643
No 38
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=45.52 E-value=3e+02 Score=26.88 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=77.0
Q ss_pred cCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccccccccccCCc-------eecCCCCcccch
Q 041112 146 NSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNRG-------IHDAKTNLHYDN 218 (342)
Q Consensus 146 ~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~-------~~d~~~~~~y~n 218 (342)
..+|...+.+.++..+.++++++.+.+.++.+.+-+.-- +.......+..-. ..++.- .....|.-.-..
T Consensus 62 ~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~~~-~~ps~~~~~~~~~~~~~mt~~eI~~ 138 (343)
T cd04734 62 SPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWLPP-LAPSAVPEPRHRAVPKAMEEEDIEE 138 (343)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCCcc-cCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 345556677777777889999999999999999987532 1111000000000 000000 000011111234
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeeec-------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 041112 219 MFDAMVDAAYAALEKAGFPKMDVIVSETG-------WASR-GDENEAGANVKNAKIYNKNLRKRLLKKKGT 281 (342)
Q Consensus 219 ~fda~~da~~~a~~~~g~~~~~ivVtEtG-------WPs~-G~~~~~~as~~na~~y~~~~i~~~~~~~Gt 281 (342)
+.+...+|..-|. ++|+.+++|..+- | .|.. -..++.+.|++|-.+|...+++.+++..|.
T Consensus 139 ii~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 139 IIAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 5555556665553 4799999998764 5 4422 222345689999999999999999987664
No 39
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.19 E-value=1.7e+02 Score=29.96 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCc
Q 041112 109 LSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFL 185 (342)
Q Consensus 109 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf 185 (342)
...+.+..++.+|++... +-++|.. +. +|| | |-.+.....++|+.+.. +=.+|+++|=
T Consensus 278 t~e~~~~~i~k~R~~~Pd------~~i~tDi----IV-GFP---g----ETeedFe~tl~lv~e~~-fd~~~~F~YS 335 (437)
T COG0621 278 TVEEYLEIIEKLRAARPD------IAISTDI----IV-GFP---G----ETEEDFEETLDLVEEVR-FDRLHVFKYS 335 (437)
T ss_pred CHHHHHHHHHHHHHhCCC------ceEeccE----EE-ECC---C----CCHHHHHHHHHHHHHhC-CCEEeeeecC
Confidence 467888888888888754 4455542 21 354 1 22355667788876554 5568888873
No 40
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=44.56 E-value=47 Score=31.75 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=49.2
Q ss_pred hHHHHHhhcCCCEEEEEeCCcc--------cchhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHH
Q 041112 43 QAVLKAFSGSGIEIIVGLGNEN--------LKDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLL 114 (342)
Q Consensus 43 ~~vL~A~~~~gi~v~vGv~n~~--------l~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv 114 (342)
+.++++++..++||++.|.+.. ...+.+++..-...++ +|..+...-.+.+|-+-=|.+.. +....++
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~~~~---~d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAKKYGYDGVNIDFENVPP---EDREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCCcEEEecccCCH---HHHHHHH
Confidence 5788888888999999887532 1233444332222222 22222211134556555565432 2356789
Q ss_pred HHHHHHHHHHHHcCC
Q 041112 115 PAAKNVYSALERLGL 129 (342)
Q Consensus 115 ~am~~v~~aL~~~gl 129 (342)
..|+.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987665
No 41
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=44.52 E-value=1.7e+02 Score=26.46 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=58.8
Q ss_pred CHHHHHHHHHhCCcCEEEEe-c-CC--hHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCC-ceEEE
Q 041112 20 SPESVVTLLKAAKIKNIRIY-D-AD--QAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPG-TKIRG 94 (342)
Q Consensus 20 s~~~v~~llks~~~~~VRiY-~-~d--~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~-~~I~~ 94 (342)
.|++.++.++..|.+.|=+- . ++ ..+|+.++..|+++-|.+..+. .+. .+.+|.+. +.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~------------~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PVE------------ELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GG------------GGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cch------------HHHHHhhhcCEEEE
Confidence 36677777777677766332 1 12 2688999999999988886432 111 14445543 23322
Q ss_pred EEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEE
Q 041112 95 IAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEV 135 (342)
Q Consensus 95 I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkV 135 (342)
.+| |+=++ ++.+.+..+..|+.+|+.+.+.|++-.|-|
T Consensus 134 MsV--~PG~~-Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGFG-GQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTTS-SB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCCC-cccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 222 33122 356788999999999999999887644443
No 42
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=44.48 E-value=38 Score=25.12 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCCCCceEEEEEeeeeeecCCC--cchHHHHHHHHHHHHHHHHHc
Q 041112 74 RAMNWIKANVDPYLPGTKIRGIAVGNEILGGTD--LELSEVLLPAAKNVYSALERL 127 (342)
Q Consensus 74 ~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~--~~~~~~Lv~am~~v~~aL~~~ 127 (342)
--..|+++||. -|++.++.++ ......|+|+++..++.++..
T Consensus 12 iLi~WLedNi~------------~es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 12 ILIAWLEDNID------------CESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHcccC------------CCCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 34579999874 3556665432 234688999999999988753
No 43
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=43.46 E-value=29 Score=34.65 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=29.2
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEE
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEII 57 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~ 57 (342)
.|.|+..|+++||+. ++|.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 689999999999999 77888889999999987
No 44
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=43.21 E-value=60 Score=31.65 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=41.5
Q ss_pred HHhhc--CCCEEEEEeCC--c---ccchhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecC--CCcchHHHHHHHH
Q 041112 47 KAFSG--SGIEIIVGLGN--E---NLKDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGG--TDLELSEVLLPAA 117 (342)
Q Consensus 47 ~A~~~--~gi~v~vGv~n--~---~l~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~--~~~~~~~~Lv~am 117 (342)
.+++. .++||++.|.. . ....++++.......++. +..+...-.+.+|-+==|-... ........++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~-iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKS-AIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHH-HHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 58999988842 2 233444444333333222 1112111124444444343221 1112356789999
Q ss_pred HHHHHHHHHcC
Q 041112 118 KNVYSALERLG 128 (342)
Q Consensus 118 ~~v~~aL~~~g 128 (342)
+.+|++|++.+
T Consensus 141 ~~lr~~l~~~~ 151 (362)
T cd02872 141 KELREAFEPEA 151 (362)
T ss_pred HHHHHHHHhhC
Confidence 99999999873
No 45
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=41.73 E-value=62 Score=26.87 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCcCEEEEe--c--------CC---hHHHHHhhcCCCEEEE
Q 041112 22 ESVVTLLKAAKIKNIRIY--D--------AD---QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY--~--------~d---~~vL~A~~~~gi~v~v 58 (342)
+++.+.++.+|++.|+++ + +. ...|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999988887 3 33 3689999999999754
No 46
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=41.07 E-value=42 Score=30.17 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=29.9
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEE
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEII 57 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~ 57 (342)
+|.|+..|++++|+.+..+.=+.++.+.||+|+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999988877889999999997
No 47
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.84 E-value=2.1e+02 Score=27.38 Aligned_cols=95 Identities=17% Similarity=0.328 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcc
Q 041112 115 PAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHI 194 (342)
Q Consensus 115 ~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~ 194 (342)
.+...++.+.+..|+-+ +++..... .+.|+ .+.+.|+.+++.+.+-|+.++.=+.... .
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~------~ 171 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGG------A 171 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCC------c
Confidence 35667777777777754 66543321 11121 1447899999999999999965443321 1
Q ss_pred cccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeec--cCCCCC
Q 041112 195 DLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETG--WASRGD 253 (342)
Q Consensus 195 ~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtG--WPs~G~ 253 (342)
.+.... .++ -.+|-+ .. -+|+++||+++.| +|..-.
T Consensus 172 ~~~~~~-------~~p-----------~~~~~v---a~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 172 GLEKGH-------SDP-----------LYLDDV---AR--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred ccccCC-------CCc-----------hHHHHH---HH--HCCCCcEEEEecCCCCchhHH
Confidence 111100 010 022322 12 2799999999999 887654
No 48
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=40.77 E-value=60 Score=33.48 Aligned_cols=74 Identities=11% Similarity=0.266 Sum_probs=42.3
Q ss_pred CcEEEeeeccCCCCCCCCCC-----CCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeecC-CCCCCCCCCccee
Q 041112 239 MDVIVSETGWASRGDENEAG-----ANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFNE-NLKPGPTSERNFG 312 (342)
Q Consensus 239 ~~ivVtEtGWPs~G~~~~~~-----as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FDe-~wK~g~~~E~~wG 312 (342)
+||+|||-|..........+ -=++--+.+++.+.+.+. ..|-+. .-+|.-++.|- .|..| +.++.||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~-~dGv~v-----~GY~~WSl~DnfEw~~G-~y~~RfG 441 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVT-YDGVDL-----MGYTPWGCIDCVSFTTG-QYSKRYG 441 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCE-----EEEeeccchhhhcccCC-CccCccc
Confidence 58999999998644311111 112233444444444441 245543 34777788872 24432 3899999
Q ss_pred eeeCCCc
Q 041112 313 LFKADGS 319 (342)
Q Consensus 313 lf~~d~~ 319 (342)
|++-|.+
T Consensus 442 l~~VD~~ 448 (477)
T PRK15014 442 FIYVNKH 448 (477)
T ss_pred eEEECCC
Confidence 9998654
No 49
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=40.50 E-value=1.2e+02 Score=30.63 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 041112 110 SEVLLPAAKNVYSALERLGL 129 (342)
Q Consensus 110 ~~~Lv~am~~v~~aL~~~gl 129 (342)
...++..|+.+|++|++.++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 56788899999999987765
No 50
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.01 E-value=3.3e+02 Score=27.58 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCc
Q 041112 109 LSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFL 185 (342)
Q Consensus 109 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf 185 (342)
...+++.+++.+|++. . .+.+++.. +. ++| | +-.+.+...++|+.+.+ +-.+++|+|-
T Consensus 270 ~~~~~~~~v~~lr~~~----~--~i~i~~d~----Iv-G~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~ys 327 (440)
T PRK14334 270 RREKYLERIAEIREAL----P--DVVLSTDI----IV-GFP---G----ETEEDFQETLSLYDEVG-YDSAYMFIYS 327 (440)
T ss_pred CHHHHHHHHHHHHHhC----C--CcEEEEeE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEee
Confidence 3567777777777653 2 25455543 21 233 1 22356778899987765 4457777653
No 51
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.57 E-value=1e+02 Score=31.74 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCcCEEEEec------C------Ch-------HHHHHhhcCCCEEEEEeCCcccch
Q 041112 22 ESVVTLLKAAKIKNIRIYD------A------DQ-------AVLKAFSGSGIEIIVGLGNENLKD 67 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~------~------d~-------~vL~A~~~~gi~v~vGv~n~~l~~ 67 (342)
++-++||+..|++.-|+=- + ++ +++.+|...||+-+|.+.--+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 4457899999988877631 1 22 588999999999999998666553
No 52
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=38.45 E-value=2.6e+02 Score=24.19 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhC--CcCEEEEecCCh-------HHHHHhhcCCCEEEEE
Q 041112 18 IPSPESVVTLLKAA--KIKNIRIYDADQ-------AVLKAFSGSGIEIIVG 59 (342)
Q Consensus 18 lps~~~v~~llks~--~~~~VRiY~~d~-------~vL~A~~~~gi~v~vG 59 (342)
..++++++++++.. .++.|.+.+-+| ++++.++..|+.+.+-
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEE
Confidence 45788998888653 368899987553 4567777788876553
No 53
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=38.42 E-value=49 Score=27.07 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhCC---cCEEEEecCChHH
Q 041112 20 SPESVVTLLKAAK---IKNIRIYDADQAV 45 (342)
Q Consensus 20 s~~~v~~llks~~---~~~VRiY~~d~~v 45 (342)
.|+++..+|+... -+++||||+|-.+
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~L 30 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNL 30 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCE
Confidence 4678888887653 3799999998643
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.10 E-value=82 Score=26.62 Aligned_cols=42 Identities=29% Similarity=0.450 Sum_probs=33.5
Q ss_pred CHHHHHHHHHhCCcCEEEEecC---------------------C--hHHHHHhhcCCCEEEEEeC
Q 041112 20 SPESVVTLLKAAKIKNIRIYDA---------------------D--QAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 20 s~~~v~~llks~~~~~VRiY~~---------------------d--~~vL~A~~~~gi~v~vGv~ 61 (342)
+|+++++.||..+++.|-+|.- | .++++|+...||+|++-+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 4788999999988888888642 1 2577999999999998775
No 55
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=38.01 E-value=82 Score=26.48 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCC-----hHHHHHhhcCCCEEEEEeCC
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDAD-----QAVLKAFSGSGIEIIVGLGN 62 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d-----~~vL~A~~~~gi~v~vGv~n 62 (342)
.+++++++..+..|++.|=+-|-+ +...+.++..||++++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 488999999999999999888764 25567777799999999964
No 56
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.84 E-value=40 Score=33.64 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=30.6
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEe
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGL 60 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv 60 (342)
+|.|+..|+++||+.. +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6899999999999998 8888899999999997333
No 57
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=37.34 E-value=1.4e+02 Score=30.09 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=51.3
Q ss_pred HHHHHhhcCCCEEEEEeCCccc----------------chhhhhH-HHHHHHHHHhccCCC-CCceEEEEEeeeeeecCC
Q 041112 44 AVLKAFSGSGIEIIVGLGNENL----------------KDISVGE-DRAMNWIKANVDPYL-PGTKIRGIAVGNEILGGT 105 (342)
Q Consensus 44 ~vL~A~~~~gi~v~vGv~n~~l----------------~~la~~~-~~A~~wv~~~v~~~~-~~~~I~~I~VGNE~l~~~ 105 (342)
.+|++++..|++.+++..|.-. ..|..+. .+-...+.+-+..|- -+..|++|.-=||+-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 4788888999998888765310 0121111 111122222222110 147899999999998653
Q ss_pred ---C--c--chHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccc
Q 041112 106 ---D--L--ELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFA 145 (342)
Q Consensus 106 ---~--~--~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~ 145 (342)
. + -...+....|+.++.+|++.||..+|-+.-+-.+..|-
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~ 234 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLY 234 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHh
Confidence 1 1 13678899999999999999998666555554454443
No 58
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=36.99 E-value=79 Score=26.96 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCcCEEEEe--c--------CCh---HHHHHhhcCCCEEEE
Q 041112 22 ESVVTLLKAAKIKNIRIY--D--------ADQ---AVLKAFSGSGIEIIV 58 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY--~--------~d~---~vL~A~~~~gi~v~v 58 (342)
+++.+.++.+|++.|+++ + +.+ ..|++|+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445677778999988887 3 333 689999999999754
No 59
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=36.96 E-value=4.8e+02 Score=26.75 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=82.8
Q ss_pred EEEeeeeeecC--CCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhh
Q 041112 94 GIAVGNEILGG--TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFS 171 (342)
Q Consensus 94 ~I~VGNE~l~~--~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~ 171 (342)
+.=|=||+=.. .......+-....+.+.++|++..- .++|+-+-. .+ .....+...++|+.
T Consensus 158 ~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p--~~~vGGp~~--~~-------------~~~~~~~~~l~~~~ 220 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDP--ELKVGGPAF--AW-------------AYDEWCEDFLEFCK 220 (486)
T ss_dssp EEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-T--TSEEEEEEE--ET-------------T-THHHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCC--CCcccCccc--cc-------------cHHHHHHHHHHHHh
Confidence 34578885332 1112345677778888888888643 478887610 00 01145677788887
Q ss_pred hcC---CCeEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeecc
Q 041112 172 QIG---SPFYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETGW 248 (342)
Q Consensus 172 ~~~---s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtGW 248 (342)
+.+ |++..+.||+-........ . ...+. ....++. ++.-+...+...+.|++++.+|| |
T Consensus 221 ~~~~~~DfiS~H~y~~~~~~~~~~~------~----~~~~~-----~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~ 282 (486)
T PF01229_consen 221 GNNCPLDFISFHSYGTDSAEDINEN------M----YERIE-----DSRRLFP-ELKETRPIINDEADPNLPLYITE--W 282 (486)
T ss_dssp HCT---SEEEEEEE-BESESE-SS-------E----EEEB-------HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--E
T ss_pred cCCCCCCEEEEEecccccccccchh------H----Hhhhh-----hHHHHHH-HHHHHHHHHhhccCCCCceeecc--c
Confidence 655 4455666664221100000 0 00000 0112222 22223334555688999999999 8
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCeeEEE---EE-eecCCCCCCCCCCcceeeeeCCCcee
Q 041112 249 ASRGDENE-AGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPVKAYI---FA-LFNENLKPGPTSERNFGLFKADGSIA 321 (342)
Q Consensus 249 Ps~G~~~~-~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~---F~-~FDe~wK~g~~~E~~wGlf~~d~~~k 321 (342)
.+.-.... ..-|.-+|.-..++++.... + .++.|- |+ .|.|.--+...+-.-|||+..+|-+|
T Consensus 283 n~~~~~~~~~~dt~~~aA~i~k~lL~~~~---~-------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 283 NASISPRNPQHDTCFKAAYIAKNLLSNDG---A-------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp ES-SSTT-GGGGSHHHHHHHHH-HHHHGG---G-------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred ccccCCCcchhccccchhhHHHHHHHhhh---h-------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 77655422 12344555554454554432 1 133322 21 23333222223556699999998655
No 60
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=36.24 E-value=51 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 041112 110 SEVLLPAAKNVYSALERLGLA 130 (342)
Q Consensus 110 ~~~Lv~am~~v~~aL~~~gl~ 130 (342)
....+..++.+.+.|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456677788899999999995
No 61
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=36.18 E-value=73 Score=25.98 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=26.9
Q ss_pred HHHHHHHhCCcCEEEEe--cCC---hHHHHHhhcCCCEEEE
Q 041112 23 SVVTLLKAAKIKNIRIY--DAD---QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 23 ~v~~llks~~~~~VRiY--~~d---~~vL~A~~~~gi~v~v 58 (342)
.+.+.++..|++.|+++ +.. ..+|++|+.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566677899998888 333 3789999999998654
No 62
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=35.68 E-value=3.9e+02 Score=25.32 Aligned_cols=140 Identities=11% Similarity=0.151 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHhCCcCEEEEecCC-------hHHHH---HhhcCCCEEEEEeCCccc---chhhhhHHHHHHHHHHh
Q 041112 16 DNIPSPESVVTLLKAAKIKNIRIYDAD-------QAVLK---AFSGSGIEIIVGLGNENL---KDISVGEDRAMNWIKAN 82 (342)
Q Consensus 16 ~nlps~~~v~~llks~~~~~VRiY~~d-------~~vL~---A~~~~gi~v~vGv~n~~l---~~la~~~~~A~~wv~~~ 82 (342)
-+.++|.++.+.|+..|+++|-+-.+. ..+++ .++..--++.+|-|-=.. ..-..+......-+...
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~ 134 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEE 134 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCC
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHh
Confidence 357899999999999999999998775 13433 344444689999873110 00112333333334433
Q ss_pred ccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHH
Q 041112 83 VDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQF 162 (342)
Q Consensus 83 v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~ 162 (342)
+..--++..+..+-=||+- .... +-..++..|++.++. .+-|+|.+ ++| +
T Consensus 135 ~~~~~~~~a~vlmGHGt~h-------~an~---~Y~~l~~~l~~~~~~-~v~vgtvE-------G~P--------~---- 184 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTPH-------PANA---AYSALQAMLKKHGYP-NVFVGTVE-------GYP--------S---- 184 (262)
T ss_dssp S-TT-TTEEEEEEE---SC-------HHHH---HHHHHHHHHHCCT-T-TEEEEETT-------SSS--------B----
T ss_pred ccccCCCCEEEEEeCCCCC-------CccH---HHHHHHHHHHhCCCC-eEEEEEeC-------CCC--------C----
Confidence 3212123334344334432 1222 334456778887775 58899875 343 2
Q ss_pred hHHHHHHhhhcCCCeEeecCCCcc
Q 041112 163 MKPLLQFFSQIGSPFYINAYPFLA 186 (342)
Q Consensus 163 ~~~~ldfl~~~~s~~~vNiyPyf~ 186 (342)
+..++..|.+.+ +=-|.+.||.-
T Consensus 185 ~~~vi~~L~~~g-~k~V~L~PlMl 207 (262)
T PF06180_consen 185 LEDVIARLKKKG-IKKVHLIPLML 207 (262)
T ss_dssp HHHHHHHHHHHT--SEEEEEEESS
T ss_pred HHHHHHHHHhcC-CCeEEEEeccc
Confidence 234445555444 22488889875
No 63
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.38 E-value=4.7e+02 Score=26.63 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCHHHHHHHH---HhCCcCEEEEecCC--------------hHHHHHhhc-CCC-EEEEEeCCcccchhhhhHHHHHHH
Q 041112 18 IPSPESVVTLL---KAAKIKNIRIYDAD--------------QAVLKAFSG-SGI-EIIVGLGNENLKDISVGEDRAMNW 78 (342)
Q Consensus 18 lps~~~v~~ll---ks~~~~~VRiY~~d--------------~~vL~A~~~-~gi-~v~vGv~n~~l~~la~~~~~A~~w 78 (342)
.-++++|++.+ ...|++.|.+.+.+ .++|+++.. .|+ ++-++..+.. .+.. +..+ .
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--~i~~--ell~-~ 257 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA--WMTD--RLIH-A 257 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--hcCH--HHHH-H
Confidence 34678876544 34789999988732 146777766 354 3433332211 1211 1111 1
Q ss_pred HHHhccCCCCCceEEEEEeeee-----eecC-CCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCc
Q 041112 79 IKANVDPYLPGTKIRGIAVGNE-----ILGG-TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSA 152 (342)
Q Consensus 79 v~~~v~~~~~~~~I~~I~VGNE-----~l~~-~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~ 152 (342)
++ .. + ..+..+.+|=| +|.. +......+.+.+++.+|+++ ..+.++|.. +. ++|
T Consensus 258 l~----~~-~-~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~------pgi~i~~d~----Iv-G~P--- 317 (459)
T PRK14338 258 VA----RL-P-KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAI------PDVSLTTDI----IV-GHP--- 317 (459)
T ss_pred Hh----cc-c-ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC---
Confidence 11 11 1 11334544332 3311 01224677777777777653 135555542 21 233
Q ss_pred cccchhhhHHhHHHHHHhhhcCCCeEeecCCCcc
Q 041112 153 CVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLA 186 (342)
Q Consensus 153 g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~ 186 (342)
| +-.+.+...++|+.+.+ +-.+++++|-.
T Consensus 318 g----ET~ed~~~ti~~l~~l~-~~~v~i~~ysp 346 (459)
T PRK14338 318 G----ETEEQFQRTYDLLEEIR-FDKVHIAAYSP 346 (459)
T ss_pred C----CCHHHHHHHHHHHHHcC-CCEeEEEecCC
Confidence 1 22366788899988765 33467777643
No 64
>CHL00041 rps11 ribosomal protein S11
Probab=35.28 E-value=90 Score=25.82 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHhCCcCEEEEe--cCC---hHHHHHhhcCCCEEEE
Q 041112 23 SVVTLLKAAKIKNIRIY--DAD---QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 23 ~v~~llks~~~~~VRiY--~~d---~~vL~A~~~~gi~v~v 58 (342)
++.+.++..|++.|+++ +.. ..+|++++..|++|.-
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~ 104 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSS 104 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 34566777899988888 333 3689999999998653
No 65
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=35.00 E-value=3.5e+02 Score=24.63 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCC-----------hHHHHHhhcCCCEEEEEeCCcc-----cchhhhhHHHHHHHHHHh
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDAD-----------QAVLKAFSGSGIEIIVGLGNEN-----LKDISVGEDRAMNWIKAN 82 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d-----------~~vL~A~~~~gi~v~vGv~n~~-----l~~la~~~~~A~~wv~~~ 82 (342)
|++ ...+.+|+.+++.|=.|-++ +.=++++...|++|+. |++.. ....+.....|..-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 454 56778899998888777443 1336788889999765 33321 122223334444444444
Q ss_pred ccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCC
Q 041112 83 VDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLA 130 (342)
Q Consensus 83 v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 130 (342)
..-=.|...+.++.|=..... .+....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~---~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALD---DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCc---chhHHHHHHHHHHHHHHHHhcCCc
Confidence 333346556678877544432 134679999999999999999885
No 66
>PRK05723 flavodoxin; Provisional
Probab=34.64 E-value=2.9e+02 Score=23.61 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=62.1
Q ss_pred ceeEEecCCCCCCCC-HHHHHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhcc
Q 041112 6 TYGINYGRIADNIPS-PESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVD 84 (342)
Q Consensus 6 ~~GvnYg~~~~nlps-~~~v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~ 84 (342)
.++|-||....|--. ++++.+.++..+++..-+...+..-+..+. .. .|+++++....-.+..+-..--.|++....
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~ 79 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFA-PE-ALLAVTSTTGMGELPDNLMPLYSAIRDQLP 79 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCC-CC-eEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence 478999987655432 234445666666643323333333333332 12 356666543222222222333456765422
Q ss_pred CCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCC
Q 041112 85 PYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLA 130 (342)
Q Consensus 85 ~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 130 (342)
..+++.++.-+-.||. ++...--.+++.+.+.|.+.|-.
T Consensus 80 ~~l~~~~~aVfGLGDs-------~Y~~~Fc~a~~~ld~~L~~lGA~ 118 (151)
T PRK05723 80 AAWRGLPGAVIALGDS-------SYGDTFCGGGEQMRELFAELGVR 118 (151)
T ss_pred cCCCCCEEEEEeEeCC-------cchHHHhHHHHHHHHHHHHCCCc
Confidence 2445556666666644 33345677889999999988764
No 67
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.49 E-value=55 Score=32.90 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=32.6
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
.|.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888999999999984444
No 68
>PRK09936 hypothetical protein; Provisional
Probab=34.47 E-value=2e+02 Score=27.87 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=41.6
Q ss_pred eeEEecCCCCCC-CCHHHHHH---HHHhCCcCEEEE-e----cCC--------hHHHHHhhcCCCEEEEEeCCcc
Q 041112 7 YGINYGRIADNI-PSPESVVT---LLKAAKIKNIRI-Y----DAD--------QAVLKAFSGSGIEIIVGLGNEN 64 (342)
Q Consensus 7 ~GvnYg~~~~nl-ps~~~v~~---llks~~~~~VRi-Y----~~d--------~~vL~A~~~~gi~v~vGv~n~~ 64 (342)
-|+=|-+...+. -++++--+ .++..|++.+=+ | +.| ...|+++...||+|.||++-|.
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 577899988774 57777654 456688876543 2 222 2678889999999999998753
No 69
>PRK08815 GTP cyclohydrolase; Provisional
Probab=34.19 E-value=56 Score=32.74 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=32.1
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
.|.|+..|+++||+...++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888899999999974444
No 70
>PRK09989 hypothetical protein; Provisional
Probab=33.80 E-value=3.2e+02 Score=25.08 Aligned_cols=52 Identities=6% Similarity=0.096 Sum_probs=39.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHhCCcCEEEEec---CC-hHHHHHhhcCCCEEEE
Q 041112 6 TYGINYGRIADNIPSPESVVTLLKAAKIKNIRIYD---AD-QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 6 ~~GvnYg~~~~nlps~~~v~~llks~~~~~VRiY~---~d-~~vL~A~~~~gi~v~v 58 (342)
...+|.+.+...+ |-.+.++.++..||+.|-+.. -+ .++.+.++.+||++..
T Consensus 3 ~~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 3 RFAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred ceeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 3567888777666 467889999999999999843 33 3677788899999876
No 71
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=33.76 E-value=74 Score=30.85 Aligned_cols=220 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred HHHHHhhcCCCEEEEE--eCCcccc----hh---hh-----hHHHHHHHHHHhccCCCCC-ceEEEEEeeeeeecCCC--
Q 041112 44 AVLKAFSGSGIEIIVG--LGNENLK----DI---SV-----GEDRAMNWIKANVDPYLPG-TKIRGIAVGNEILGGTD-- 106 (342)
Q Consensus 44 ~vL~A~~~~gi~v~vG--v~n~~l~----~l---a~-----~~~~A~~wv~~~v~~~~~~-~~I~~I~VGNE~l~~~~-- 106 (342)
.+++-++..|++|--- ||-...+ .. .. -.+..+.++.+-+..| .+ .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 4677777888887422 3332211 11 11 1234456777766665 43 47999999999997532
Q ss_pred ----cchH------HHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCC
Q 041112 107 ----LELS------EVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSP 176 (342)
Q Consensus 107 ----~~~~------~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~ 176 (342)
.+.. ..+..+.+-.|++... ++.--- ..+++. +.-...+..++..|.+.+-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~N-Dy~~~~-----------~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYN-DYNIES-----------PAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEE-ESSTTS-----------THHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEec-cccccc-----------hHHHHHHHHHHHHHHhCCCc
Confidence 1122 3455566666666542 222211 111211 11124466777777766544
Q ss_pred eEeecCCCccccCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCCC
Q 041112 177 FYINAYPFLAYKNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETGWASRGDENE 256 (342)
Q Consensus 177 ~~vNiyPyf~~~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtGWPs~G~~~~ 256 (342)
+ |=.-|| ++..... . .+.+..+|++..--+++|.|||--=........
T Consensus 204 I-------------------dgIG~Q---~H~~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 I-------------------DGIGLQ---SHFDAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp S--------------------EEEEE---EEEETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred c-------------------ceechh---hccCCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 2 111111 1221111 1 223333444444456999999986444433211
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCe-eEEEEEeecCC-CCCCCCCCcceeeeeCCCceeE
Q 041112 257 AGANVKNAKIYNKNLRKRLLKKKGTPYRPKKPV-KAYIFALFNEN-LKPGPTSERNFGLFKADGSIAY 322 (342)
Q Consensus 257 ~~as~~na~~y~~~~i~~~~~~~Gtp~rp~~~~-~~y~F~~FDe~-wK~g~~~E~~wGlf~~d~~~ky 322 (342)
....+.++.+++.+++.+.+. | |. .+ .+.+..+.|.. |.+... -.+=+||+.|.+||-
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~---~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSH---P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT---T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-H
T ss_pred -hHHHHHHHHHHHHHHHHHHhC---C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCH
Confidence 234667788889999888752 1 00 13 34444555633 554311 233479999999884
No 72
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.75 E-value=87 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 22 ESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
..+.++|+.+|++.|=+...-+..+++|+..||+|..+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578999999999998888888999999999999999877
No 73
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.36 E-value=56 Score=32.27 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHHhCCcCEEEEecCC-hHHHHHhhcCCCEEE
Q 041112 24 VVTLLKAAKIKNIRIYDAD-QAVLKAFSGSGIEII 57 (342)
Q Consensus 24 v~~llks~~~~~VRiY~~d-~~vL~A~~~~gi~v~ 57 (342)
..|.|+..|+++||+...+ |.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3688999999999999998 887888999999986
No 74
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.17 E-value=60 Score=32.81 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEe
Q 041112 24 VVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGL 60 (342)
Q Consensus 24 v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv 60 (342)
..+.|+..|+++||+...+|.=+.++.+.||+|.=-+
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 3688999999999999999988889999999997333
No 75
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.67 E-value=3.5e+02 Score=24.24 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCcCEEEEecCCh---------HHHHHhhcCCCEEEEE--eCCcccchhhhhHHHHHHHHHHhccCCCCCc
Q 041112 22 ESVVTLLKAAKIKNIRIYDADQ---------AVLKAFSGSGIEIIVG--LGNENLKDISVGEDRAMNWIKANVDPYLPGT 90 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~~d~---------~vL~A~~~~gi~v~vG--v~n~~l~~la~~~~~A~~wv~~~v~~~~~~~ 90 (342)
..+++.|..+|.++|=+.+... ...++++..|+++.+- ...............+.+|++.+ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 4456666667777776654321 2345667778776211 11111111222334556676543 1
Q ss_pred eEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCC--CceEEeccccc
Q 041112 91 KIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLA--KLIEVSSPHSE 141 (342)
Q Consensus 91 ~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~--~~IkVsT~~~~ 141 (342)
.+++|+..|+.+.. . +.++|++.|+. ++|.|.+-+..
T Consensus 171 ~~~ai~~~~d~~a~----------g----~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 171 KPVGIFACTDARAR----------Q----LLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred CCcEEEecChHHHH----------H----HHHHHHHhCCCCCCceEEEeeCCc
Confidence 24566666544321 1 23455566663 56776665543
No 76
>PRK05309 30S ribosomal protein S11; Validated
Probab=32.55 E-value=1e+02 Score=25.94 Aligned_cols=36 Identities=17% Similarity=0.445 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCcCEEEEec--CC---hHHHHHhhcCCCEEE
Q 041112 22 ESVVTLLKAAKIKNIRIYD--AD---QAVLKAFSGSGIEII 57 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~--~d---~~vL~A~~~~gi~v~ 57 (342)
+.+.+.++..|++.|+++= .. ..+|++|+..|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3345677789999999983 33 368999999999865
No 77
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.26 E-value=2.2e+02 Score=26.35 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCCh--------HHHHHhhc-CCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCC
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDADQ--------AVLKAFSG-SGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPG 89 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d~--------~vL~A~~~-~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~ 89 (342)
.+|-++++.++..|++.+-+.|.|. ++++.+.. .-.+|.+|=... +.+.++.|+..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------
Confidence 3688899999889999999998762 56766665 334788864422 33445556552
Q ss_pred ceEEEEEeeeeeecC
Q 041112 90 TKIRGIAVGNEILGG 104 (342)
Q Consensus 90 ~~I~~I~VGNE~l~~ 104 (342)
.+..|+||.|.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899999864
No 78
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=32.11 E-value=63 Score=31.65 Aligned_cols=76 Identities=25% Similarity=0.235 Sum_probs=50.4
Q ss_pred HHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHH
Q 041112 44 AVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSA 123 (342)
Q Consensus 44 ~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~a 123 (342)
.||+++-.+|-.+.+|=.- .+.. +++.|..|+...+..++ ..|.+|+--|.-..+ .+ -++
T Consensus 176 ~VLkp~idsGkik~~Ge~~--~d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag----------Ga----I~a 235 (341)
T COG4213 176 KVLKPLIDSGKIKVVGEQW--TDGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG----------GA----IAA 235 (341)
T ss_pred HHHHHHhhCCceEEeeecc--cccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH----------HH----HHH
Confidence 6899888887544477532 2233 45678889988888876 447777766553221 12 257
Q ss_pred HHHcCCCCceEEeccc
Q 041112 124 LERLGLAKLIEVSSPH 139 (342)
Q Consensus 124 L~~~gl~~~IkVsT~~ 139 (342)
|++.||+++++||=-+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999989877543
No 79
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=31.79 E-value=3.4e+02 Score=26.66 Aligned_cols=130 Identities=16% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHH---hCCcCEEEEecCCh-------HHHHHhhcCCCE-EEEEeCCcccchhhhhHHHHHHHHHHhccC
Q 041112 17 NIPSPESVVTLLK---AAKIKNIRIYDADQ-------AVLKAFSGSGIE-IIVGLGNENLKDISVGEDRAMNWIKANVDP 85 (342)
Q Consensus 17 nlps~~~v~~llk---s~~~~~VRiY~~d~-------~vL~A~~~~gi~-v~vGv~n~~l~~la~~~~~A~~wv~~~v~~ 85 (342)
++.|++++..+++ ..|+.+|||-+-.| +++..++..+++ |.++-.--.+.. -|..|-...+.
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~------~a~~Lk~AGl~- 113 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLAR------RAADLKEAGLD- 113 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHH------HHHHHHHcCCc-
Confidence 4558898865553 47899999998765 456666666443 555532222332 33444333221
Q ss_pred CCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHH
Q 041112 86 YLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKP 165 (342)
Q Consensus 86 ~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~ 165 (342)
..+|..=+.=.|.+.. -+-...+-..|+-|.+|+ ++|+. +|||-|+.--+ .. ...+-+
T Consensus 114 ---rVNVSLDsld~e~f~~--IT~~~~~~~Vl~GI~~A~-~~Gl~-pVKlN~Vv~kg-----------vN----d~ei~~ 171 (322)
T COG2896 114 ---RVNVSLDSLDPEKFRK--ITGRDRLDRVLEGIDAAV-EAGLT-PVKLNTVLMKG-----------VN----DDEIED 171 (322)
T ss_pred ---EEEeecccCCHHHHHH--HhCCCcHHHHHHHHHHHH-HcCCC-ceEEEEEEecC-----------CC----HHHHHH
Confidence 1232222222222210 000112344445555553 57896 59999874211 11 256788
Q ss_pred HHHHhhhcCC
Q 041112 166 LLQFFSQIGS 175 (342)
Q Consensus 166 ~ldfl~~~~s 175 (342)
+++|....+-
T Consensus 172 l~e~~~~~~~ 181 (322)
T COG2896 172 LLEFAKERGA 181 (322)
T ss_pred HHHHHhhcCC
Confidence 9999876664
No 80
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=31.74 E-value=63 Score=34.00 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.8
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
++.|+..|+++||+...+|.=+.++++.||+|.=-++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999989999999999874444
No 81
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.42 E-value=65 Score=33.07 Aligned_cols=37 Identities=14% Similarity=0.401 Sum_probs=32.1
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeC
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
.|.|+..|+++||+...+|.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6889999999999999999888999999999973333
No 82
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.01 E-value=4.3e+02 Score=26.54 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCcc
Q 041112 109 LSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLA 186 (342)
Q Consensus 109 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~ 186 (342)
...++..+++.+|+++ ..+.++|.. +. +|| | |-.+.+...++|+.+.+ +-.+++++|-.
T Consensus 257 ~~~~~~~~i~~lr~~~------pgi~i~~d~----Iv-GfP---G----ET~edf~~tl~fi~~~~-~~~~~v~~ysp 315 (418)
T PRK14336 257 TNQQYRELVERLKTAM------PDISLQTDL----IV-GFP---S----ETEEQFNQSYKLMADIG-YDAIHVAAYSP 315 (418)
T ss_pred CHHHHHHHHHHHHhhC------CCCEEEEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCEEEeeecCC
Confidence 3677888888887763 235555543 22 244 1 22366788899988765 34467777654
No 83
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=30.99 E-value=1.1e+02 Score=29.20 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=42.0
Q ss_pred HHHhhc--CCCEEEEEeCC----cccchhhhhHHHHHHHHHHhccCCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHH
Q 041112 46 LKAFSG--SGIEIIVGLGN----ENLKDISVGEDRAMNWIKANVDPYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKN 119 (342)
Q Consensus 46 L~A~~~--~gi~v~vGv~n----~~l~~la~~~~~A~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~ 119 (342)
+.+++. .+++|++.|.. +....+.++....+.+++ +|..+...-.+.+|-+==|...... .....++..|+.
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~-~i~~~~~~~~~DGidiDwE~~~~~~-~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFID-SIVSFLKKYGFDGIDIDWEYPGARG-DDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHH-HHHHHHHHcCCCeEEECCcCCCCCc-cHHHHHHHHHHH
Confidence 455655 48999998865 223344444332222222 1222211123556655444432210 224578889999
Q ss_pred HHHHHHHc
Q 041112 120 VYSALERL 127 (342)
Q Consensus 120 v~~aL~~~ 127 (342)
+|++|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 84
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.96 E-value=2.5e+02 Score=28.05 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCcccc--chhhhHHhHHHHHHhhhcCCCeEeecCCCccc
Q 041112 110 SEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVF--REDVSQFMKPLLQFFSQIGSPFYINAYPFLAY 187 (342)
Q Consensus 110 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f--~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~ 187 (342)
..++...++..|+. .|++.+-..-.-+... .+.| .++.-+-++.+++.|.+.+--++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 56666777666653 4666665422222221 2233 22222567889999999999999999998763
Q ss_pred cCCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCC----CCCcEEEeeeccCCCCCCCCCCCCHHH
Q 041112 188 KNDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGF----PKMDVIVSETGWASRGDENEAGANVKN 263 (342)
Q Consensus 188 ~~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~----~~~~ivVtEtGWPs~G~~~~~~as~~n 263 (342)
... +|. .|+.. ...|+ ++-...+++. ||-.+.- ..-+-..
T Consensus 110 ~~~------~~~-------------------~~~~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYE-------------------NYDEA--------KEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPE 153 (441)
T ss_dssp TTT------B-H-------------------HHHHH--------HHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHH
T ss_pred CCC------cch-------------------hhhhH--------hhcCceeecccCCcccccc-cCCcccc--cCCCChh
Confidence 211 111 12211 11221 2235677777 8844321 1234445
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCeeEEEEEeec
Q 041112 264 AKIYNKNLRKRLLKKKGTPYRPKKPVKAYIFALFN 298 (342)
Q Consensus 264 a~~y~~~~i~~~~~~~Gtp~rp~~~~~~y~F~~FD 298 (342)
++.++++.++.+.+.. +++.++..+=+
T Consensus 154 a~~w~~~~~~~~~~~~--------Gvdg~w~D~~E 180 (441)
T PF01055_consen 154 ARDWWKEQLKELLDDY--------GVDGWWLDFGE 180 (441)
T ss_dssp HHHHHHHHHHHHHTTS--------T-SEEEEESTT
T ss_pred HHHHHHHHHHHHHhcc--------CCceEEeecCC
Confidence 8888877777776422 57898887633
No 85
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=30.53 E-value=1.8e+02 Score=30.02 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCcCEEEEec-------------CCh-------HHHHHhhcCCCEEEEEeCCcccch
Q 041112 22 ESVVTLLKAAKIKNIRIYD-------------ADQ-------AVLKAFSGSGIEIIVGLGNENLKD 67 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~-------------~d~-------~vL~A~~~~gi~v~vGv~n~~l~~ 67 (342)
++-++|||+.|++.-|+== .++ +++.+|...||+-+|.+.--+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 4558899999988887641 122 578999999999999997656553
No 86
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=29.98 E-value=5.1e+02 Score=24.99 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccc------------cccccccCCc-------e
Q 041112 147 SFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDL------------NYATFKSNRG-------I 207 (342)
Q Consensus 147 s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~------------~yalf~~~~~-------~ 207 (342)
.+|...+.+.++..+.++.+.|-+.+.++.+++-++- .+.......++ ......++.. .
T Consensus 63 ~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~ 140 (336)
T cd02932 63 ITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT 140 (336)
T ss_pred CCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 3555556777887889999999999999999998643 12111100000 0000111100 0
Q ss_pred ecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeec------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 041112 208 HDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETG------WASR-GDENEAGANVKNAKIYNKNLRKRLLKKKG 280 (342)
Q Consensus 208 ~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtG------WPs~-G~~~~~~as~~na~~y~~~~i~~~~~~~G 280 (342)
....+.-.-..+.+...++...+. ++|+.+++|..+--. .|.. -..++-+.+.+|=-.|...+++.+++..|
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 000111112456667777776664 479999999876522 2522 22233468999999999999999987665
No 87
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.56 E-value=3.1e+02 Score=24.55 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEee-eccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 041112 223 MVDAAYAALEKAGFPKMDVIVSE-TGWASRGDENEAGANVKNAKIYNKNLRKRLLKKKGT 281 (342)
Q Consensus 223 ~~da~~~a~~~~g~~~~~ivVtE-tGWPs~G~~~~~~as~~na~~y~~~~i~~~~~~~Gt 281 (342)
.++.++..+. .++|++||++.| .++|..--........+......+..+..+++ .|.
T Consensus 79 ~~~~fv~~iR-~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~-~g~ 136 (178)
T PF14606_consen 79 RLDGFVKTIR-EAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK-EGD 136 (178)
T ss_dssp HHHHHHHHHH-TT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHH-HhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 3444444443 579999999999 45555522223356677777777777777753 453
No 88
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.30 E-value=6e+02 Score=25.54 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=42.9
Q ss_pred EEEEEeeeeeecC------CCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHH
Q 041112 92 IRGIAVGNEILGG------TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKP 165 (342)
Q Consensus 92 I~~I~VGNE~l~~------~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~ 165 (342)
..++.+|=|-... +......+...+++.+|+.+ ..+.|+|.. +. +|| .|-.+.+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~------~~i~i~~d~----Iv-GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV------PDASISSDI----IV-GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC-------CCCHHHHHH
Confidence 3466666554321 01123567777777777652 135666643 21 243 122366788
Q ss_pred HHHHhhhcCCCeEeecCCCccc
Q 041112 166 LLQFFSQIGSPFYINAYPFLAY 187 (342)
Q Consensus 166 ~ldfl~~~~s~~~vNiyPyf~~ 187 (342)
.++|+.+.+ +-.+++++|-..
T Consensus 312 tl~fi~~~~-~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKAQ-FERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhcC-CCEEeeeeccCC
Confidence 999998766 345677776543
No 89
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.09 E-value=6.1e+02 Score=25.56 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCcc
Q 041112 109 LSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLA 186 (342)
Q Consensus 109 ~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~ 186 (342)
...++..+++.+++++ ..+.++|.. +. ++| | |-.+.+...++|+.+.+ +-.+++|+|-.
T Consensus 280 ~~~~~~~~i~~lr~~~------~~i~i~~d~----Iv-G~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 280 TREYYLELVEKIKSNI------PDVAITTDI----IV-GFP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred CHHHHHHHHHHHHHhC------CCCEEEEEE----EE-ECC---C----CCHHHHHHHHHHHHhcC-CCcccceEecC
Confidence 3677777887777653 135555432 21 243 1 22356788889987654 44567776643
No 90
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.82 E-value=1.9e+02 Score=29.82 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCcCEEEEe-------c------CCh-------HHHHHhhcCCCEEEEEeCCcccch
Q 041112 22 ESVVTLLKAAKIKNIRIY-------D------ADQ-------AVLKAFSGSGIEIIVGLGNENLKD 67 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY-------~------~d~-------~vL~A~~~~gi~v~vGv~n~~l~~ 67 (342)
++-++||+..|++..|+= - .++ +++.+|...||+.+|.+.--+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 445789999988877753 1 132 578999999999999997655553
No 91
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=28.47 E-value=3.8e+02 Score=27.41 Aligned_cols=111 Identities=12% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHhhc--CCCEEEEEe--CCcc--cchhhhhHHHHHHHHHHhccCC-------------CCCceEEEEEeeeeeecC
Q 041112 44 AVLKAFSG--SGIEIIVGL--GNEN--LKDISVGEDRAMNWIKANVDPY-------------LPGTKIRGIAVGNEILGG 104 (342)
Q Consensus 44 ~vL~A~~~--~gi~v~vGv--~n~~--l~~la~~~~~A~~wv~~~v~~~-------------~~~~~I~~I~VGNE~l~~ 104 (342)
..|..++. .++|+.+.| |.+. ...++++.+.-+..+++.|.=. ||.. .|++...+
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~------~~~~~~~~ 188 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGS------GGDAGNCG 188 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCC------CCCCCCCC
Q ss_pred CCcchHHHHHHHHHHHHHHHHHcCCCC--ceEEeccccccccccCCCCCccccchhhhHHhHHHHHHh
Q 041112 105 TDLELSEVLLPAAKNVYSALERLGLAK--LIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFF 170 (342)
Q Consensus 105 ~~~~~~~~Lv~am~~v~~aL~~~gl~~--~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl 170 (342)
.....+..+-.|+.||++|-++|.++ +..+|++ -|-|...++.--...|...|||+
T Consensus 189 -~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA---------~~as~~~l~~~~~~~~~~~vDyi 246 (441)
T COG3325 189 -RPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIA---------APASKDKLEGLNHAEIAQYVDYI 246 (441)
T ss_pred -CcccHHHHHHHHHHHHHHHhhcccccCceEEEEEe---------cCCchhhhhcccHHHHHHHHhhh
No 92
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=27.83 E-value=5.3e+02 Score=24.48 Aligned_cols=131 Identities=11% Similarity=0.167 Sum_probs=76.5
Q ss_pred ccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCccccCCCCcccccccccccCC-------ceecCCCCcccc
Q 041112 145 ANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYKNDPEHIDLNYATFKSNR-------GIHDAKTNLHYD 217 (342)
Q Consensus 145 ~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~~~~~~~~~~yalf~~~~-------~~~d~~~~~~y~ 217 (342)
...+|...+.+.++..+.++++++.+.+.++.+.+-++.- +......... ...+.++. ......+.-.-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~mt~~ei~ 137 (327)
T cd02803 61 GKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLTG-GPPPAPSAIPSPGGGEPPREMTKEEIE 137 (327)
T ss_pred ccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCCC-CCccCCCCCCCCCCCCCCCcCCHHHHH
Confidence 3446777788888878889999999999999888876421 1111000000 00000000 000111111233
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeeec-------cCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhcC
Q 041112 218 NMFDAMVDAAYAALEKAGFPKMDVIVSETG-------WASRGD-ENEAGANVKNAKIYNKNLRKRLLKKKG 280 (342)
Q Consensus 218 n~fda~~da~~~a~~~~g~~~~~ivVtEtG-------WPs~G~-~~~~~as~~na~~y~~~~i~~~~~~~G 280 (342)
.+.+...++...+. ++|+..++|..+ -| .|..-. ..+-+.|.+|-.+|...+++.+++..|
T Consensus 138 ~~i~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 138 QIIEDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 45555556655554 479999999875 24 354222 223467899999999999999987654
No 93
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.45 E-value=7.2e+02 Score=25.53 Aligned_cols=127 Identities=10% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCCHHHHHHHH----HhCCcCEEEEecCC----h----HHHHHhhcCC-CEEEEEeCCcccchhhhhHHHHHHHHHHhcc
Q 041112 18 IPSPESVVTLL----KAAKIKNIRIYDAD----Q----AVLKAFSGSG-IEIIVGLGNENLKDISVGEDRAMNWIKANVD 84 (342)
Q Consensus 18 lps~~~v~~ll----ks~~~~~VRiY~~d----~----~vL~A~~~~g-i~v~vGv~n~~l~~la~~~~~A~~wv~~~v~ 84 (342)
.-++++|++.| +..|++.+-+.|-+ . ++++++...| +++..++... ...+..+.+....+-+
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r-~~~i~~d~ell~~l~~---- 295 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTR-VTDIVRDADILHLYRR---- 295 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecc-cccccCCHHHHHHHHH----
Confidence 35678877654 34688888877653 2 5677777776 6665554321 1122212222222211
Q ss_pred CCCCCceEEEEEeeeeeecC------CCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCCccccchh
Q 041112 85 PYLPGTKIRGIAVGNEILGG------TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPSACVFRED 158 (342)
Q Consensus 85 ~~~~~~~I~~I~VGNE~l~~------~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~ 158 (342)
..+..|.+|=|.... +......+...+++.+|+ +|+ .+.... ++ .+| . +
T Consensus 296 -----aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~----~Gi----~~~~~~---I~--G~P-~------e 350 (497)
T TIGR02026 296 -----AGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ----HNI----LSEAQF---IT--GFE-N------E 350 (497)
T ss_pred -----hCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH----CCC----cEEEEE---EE--ECC-C------C
Confidence 346788888887542 112235566666655554 455 232211 12 122 1 1
Q ss_pred hhHHhHHHHHHhhhcC
Q 041112 159 VSQFMKPLLQFFSQIG 174 (342)
Q Consensus 159 ~~~~~~~~ldfl~~~~ 174 (342)
-.+.+...++|+.+.+
T Consensus 351 t~e~~~~t~~~~~~l~ 366 (497)
T TIGR02026 351 TDETFEETYRQLLDWD 366 (497)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 1356777888887655
No 94
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.08 E-value=4e+02 Score=24.55 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHh-CCcCEEEEecCC---------hHHHHHhh-cCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCC
Q 041112 19 PSPESVVTLLKA-AKIKNIRIYDAD---------QAVLKAFS-GSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYL 87 (342)
Q Consensus 19 ps~~~v~~llks-~~~~~VRiY~~d---------~~vL~A~~-~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~ 87 (342)
.+|.++++.+.+ .|++.+=+.|.| .++++.+. ..+++|.+|=... +.+.++.++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr-------s~e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR-------TKSQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC-------CHHHHHHHHHC------
Confidence 477788888877 789999999875 24676654 5789999976532 23344555442
Q ss_pred CCceEEEEEeeeeeecC
Q 041112 88 PGTKIRGIAVGNEILGG 104 (342)
Q Consensus 88 ~~~~I~~I~VGNE~l~~ 104 (342)
-+..|+||+|.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 23457899999864
No 95
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.97 E-value=1.5e+02 Score=25.79 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=30.5
Q ss_pred EEe-cCC-h----HHHHHhhcCCCEEEEEeCCcccc----------hhhhhHHHHHHHHHHhccCC
Q 041112 37 RIY-DAD-Q----AVLKAFSGSGIEIIVGLGNENLK----------DISVGEDRAMNWIKANVDPY 86 (342)
Q Consensus 37 RiY-~~d-~----~vL~A~~~~gi~v~vGv~n~~l~----------~la~~~~~A~~wv~~~v~~~ 86 (342)
+|| |+| | .+.+++..+|++|++ |.|..+. -+.+..++|+.|+-.+..+.
T Consensus 3 ~I~VDADACPVk~~i~r~A~r~~~~v~~-Van~~~~~~~~~~i~~v~V~~g~DaaD~~Iv~~a~~g 67 (150)
T COG1671 3 TIWVDADACPVKDEIYRVAERMGLKVTF-VANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAEKG 67 (150)
T ss_pred eEEEeCCCCchHHHHHHHHHHhCCeEEE-EeCCCccCCCCCceeEEEecCCcchHHHHHHHhCCCC
Confidence 456 666 2 567777788888877 3333222 23345578889988776553
No 96
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.95 E-value=1.6e+02 Score=24.71 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCC-------hHHHHHhhcC---CCEEEEE
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDAD-------QAVLKAFSGS---GIEIIVG 59 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d-------~~vL~A~~~~---gi~v~vG 59 (342)
-|++++++..++.+.+.|=+-+.+ +.++++++.. .++|++|
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 355666666655555655555443 2445555544 3556666
No 97
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=25.80 E-value=75 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHhHHHHHHhhhcC--CCeEeecCCCcc
Q 041112 161 QFMKPLLQFFSQIG--SPFYINAYPFLA 186 (342)
Q Consensus 161 ~~~~~~ldfl~~~~--s~~~vNiyPyf~ 186 (342)
+.+..++.|...-+ ...++|+||+.+
T Consensus 32 ~T~~~~~~~a~~~gyg~~~i~NLf~~~~ 59 (136)
T PF07799_consen 32 PTIRRCINFARRWGYGGVIIVNLFPQRS 59 (136)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeccccc
Confidence 77888999886643 788999999977
No 98
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=25.76 E-value=2.1e+02 Score=26.22 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCCh---------HHHHHh-hcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCC
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDADQ---------AVLKAF-SGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLP 88 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d~---------~vL~A~-~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~ 88 (342)
-+|-++++.+...+++.+-+-|.|. +++..+ +..++.|.+|=... +.+.++.|+...
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~G------ 95 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDAG------ 95 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHTT------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHhC------
Confidence 5788899999999999998888651 345444 45789999987732 345566666532
Q ss_pred CceEEEEEeeeeeecC
Q 041112 89 GTKIRGIAVGNEILGG 104 (342)
Q Consensus 89 ~~~I~~I~VGNE~l~~ 104 (342)
+..|++|.|.+.+
T Consensus 96 ---a~~Vvigt~~~~~ 108 (229)
T PF00977_consen 96 ---ADRVVIGTEALED 108 (229)
T ss_dssp ----SEEEESHHHHHC
T ss_pred ---CCEEEeChHHhhc
Confidence 3478999999865
No 99
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.50 E-value=1.7e+02 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=35.1
Q ss_pred HHHHHHHhCCcCEEEEecCC---hHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHH
Q 041112 23 SVVTLLKAAKIKNIRIYDAD---QAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIK 80 (342)
Q Consensus 23 ~v~~llks~~~~~VRiY~~d---~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~ 80 (342)
+-+++|.+.++..+||=+.| ..+|+.++.+|..|+|......+. ++..|.+.++
T Consensus 80 ~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~----EI~~Av~~~~ 136 (241)
T PF03102_consen 80 ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLE----EIERAVEVLR 136 (241)
T ss_dssp HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HH----HHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHH----HHHHHHHHHH
Confidence 34677777788999998766 368999999999999998865444 4556666663
No 100
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=24.80 E-value=1.4e+02 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHHHHHhCCcCEEEEec--C--ChHHHHHhhcCCCEEEE
Q 041112 24 VVTLLKAAKIKNIRIYD--A--DQAVLKAFSGSGIEIIV 58 (342)
Q Consensus 24 v~~llks~~~~~VRiY~--~--d~~vL~A~~~~gi~v~v 58 (342)
+++..+..|++.|.++- + -..+|+|+...||+|..
T Consensus 172 aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~ 210 (233)
T PTZ00090 172 IAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQ 210 (233)
T ss_pred HHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEE
Confidence 44566678999998883 2 24789999999999876
No 101
>PRK07198 hypothetical protein; Validated
Probab=24.79 E-value=64 Score=32.58 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHhCCcCEE-EEecCChHHHHHhhcCCCEEEEEeC
Q 041112 25 VTLLKAAKIKNI-RIYDADQAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 25 ~~llks~~~~~V-RiY~~d~~vL~A~~~~gi~v~vGv~ 61 (342)
.|.|+..|+++| |+...++.=+.++.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 688899999999 9999999888999999999985554
No 102
>PRK09004 FMN-binding protein MioC; Provisional
Probab=24.74 E-value=4.3e+02 Score=22.32 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=61.7
Q ss_pred ceeEEecCCCCCCCC-HHHHHHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhcc
Q 041112 6 TYGINYGRIADNIPS-PESVVTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVD 84 (342)
Q Consensus 6 ~~GvnYg~~~~nlps-~~~v~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~ 84 (342)
.|.|-||....|.-. ++++.+.+++.|+ .+++++.+. +..+.... -|+++++....-.+..+-..-..|++.. .
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~-~~~~~~~~~--~~~l~~~~-~li~~~sT~G~Ge~p~~~~~f~~~L~~~-~ 77 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGF-STETLHGPL--LDDLSASG-LWLIVTSTHGAGDLPDNLQPFFEELQEQ-K 77 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCC-ceEEeccCC--HHHhccCC-eEEEEECCCCCCCCChhHHHHHHHHHhc-C
Confidence 588999987666432 3445566666776 356665542 33444433 4667776532122222323334566653 2
Q ss_pred CCCCCceEEEEEeeeeeecCCCcchHHHHHHHHHHHHHHHHHcCCC
Q 041112 85 PYLPGTKIRGIAVGNEILGGTDLELSEVLLPAAKNVYSALERLGLA 130 (342)
Q Consensus 85 ~~~~~~~I~~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~~~gl~ 130 (342)
+.+.+.++..+-.||. ++ ..--.+++++.+.|.+.|-.
T Consensus 78 ~~l~g~~~aVfGlGds-------~Y-~~fc~~~~~ld~~l~~lGa~ 115 (146)
T PRK09004 78 PDLSQVRFAAIGIGSS-------EY-DTFCGAIDKLEQLLKAKGAK 115 (146)
T ss_pred CCCCCCEEEEEeecCC-------CH-HHHhHHHHHHHHHHHHcCCe
Confidence 2334444444444432 33 45567888999999987764
No 103
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=24.45 E-value=2.5e+02 Score=27.17 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCceEEeccccccccc----cCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecC
Q 041112 110 SEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFA----NSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAY 182 (342)
Q Consensus 110 ~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~----~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiy 182 (342)
...+-..++.++.+|+....++.|.|......-++. ..|++.+...+++..+.|..+.+.|......+.|--|
T Consensus 141 ~~~~~~~~~~l~~~l~~~~~~~~v~v~~~~~~v~I~l~~~~~F~~gsa~L~~~~~~~L~~ia~~L~~~~~~I~I~GH 217 (302)
T PRK08944 141 QEQIEDLVKKLAQQLEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGH 217 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCceEEEEeCCEEEEEeCCCCeeCCCCcccCHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 355666678889999988888888887765543332 1376666666777778888888888765555555443
No 104
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.40 E-value=5.5e+02 Score=23.45 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=36.2
Q ss_pred eEEecCCCCCCCCHHHHHHHHHhCCcCEEEEecC---Ch-HHHHHhhcCCCEEEE
Q 041112 8 GINYGRIADNIPSPESVVTLLKAAKIKNIRIYDA---DQ-AVLKAFSGSGIEIIV 58 (342)
Q Consensus 8 GvnYg~~~~nlps~~~v~~llks~~~~~VRiY~~---d~-~vL~A~~~~gi~v~v 58 (342)
-+|.+..-..+ +.++.++.++..||+.|-++.. ++ .+.+.++..||++..
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 34544444444 3577889999999999998764 33 567788899999975
No 105
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=24.32 E-value=1.2e+02 Score=29.78 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhCCcCEEEEecCCh------HHHHHhhcCCCEEEEEeCC
Q 041112 18 IPSPESVVTLLKAAKIKNIRIYDADQ------AVLKAFSGSGIEIIVGLGN 62 (342)
Q Consensus 18 lps~~~v~~llks~~~~~VRiY~~d~------~vL~A~~~~gi~v~vGv~n 62 (342)
.|+++++.+++.... +.||+|...| .+++.++..|+.|.+|=.+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367778888887643 6688885443 5788888999999888654
No 106
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=24.14 E-value=1.7e+02 Score=25.52 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCcCEEEEec--------CC-----hHHHHHhhcCCCEEEE
Q 041112 22 ESVVTLLKAAKIKNIRIYD--------AD-----QAVLKAFSGSGIEIIV 58 (342)
Q Consensus 22 ~~v~~llks~~~~~VRiY~--------~d-----~~vL~A~~~~gi~v~v 58 (342)
+++++.++..|++.|+++- -. ...|++|+..||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4456677789999888885 11 3689999999999864
No 107
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.75 E-value=4.4e+02 Score=24.48 Aligned_cols=70 Identities=24% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCCh---------HHHHHhhcCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCC
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDADQ---------AVLKAFSGSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPG 89 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d~---------~vL~A~~~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~ 89 (342)
..|-++++.++..|++.+=+.|.|. ++++.++..=+.|.+|=... +.+.++.|+...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr-------s~e~~~~~l~~G------- 95 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR-------SLDYAEKLRKLG------- 95 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC-------CHHHHHHHHHCC-------
Confidence 4788999999999999999998762 56777665326777765432 334556666522
Q ss_pred ceEEEEEeeeeeecC
Q 041112 90 TKIRGIAVGNEILGG 104 (342)
Q Consensus 90 ~~I~~I~VGNE~l~~ 104 (342)
+..|+||.+.+.+
T Consensus 96 --a~rvvigT~a~~~ 108 (241)
T PRK14114 96 --YRRQIVSSKVLED 108 (241)
T ss_pred --CCEEEECchhhCC
Confidence 3457899999864
No 108
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=22.73 E-value=1.5e+02 Score=27.30 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=39.6
Q ss_pred ceeEEecCCCCCCCCHHHHHHHH---HhCCcCEEEEecCC--h---HHHHHhhcCCCEEEEEeC
Q 041112 6 TYGINYGRIADNIPSPESVVTLL---KAAKIKNIRIYDAD--Q---AVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 6 ~~GvnYg~~~~nlps~~~v~~ll---ks~~~~~VRiY~~d--~---~vL~A~~~~gi~v~vGv~ 61 (342)
.++||-.++-.+-+...++++.| +..|++++=+|+.+ + .+|+.....|+ |.+=-|
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~-v~~~~w 64 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGY-VEVIPW 64 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCe-EEEEEc
Confidence 37999999877777766776544 66899999999765 2 57777777773 444334
No 109
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.66 E-value=5.9e+02 Score=23.19 Aligned_cols=89 Identities=20% Similarity=0.375 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHhCCcCEEEEecCC---hHHHHHhhc--CCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCCceEE
Q 041112 19 PSPESVVTLLKAAKIKNIRIYDAD---QAVLKAFSG--SGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPGTKIR 93 (342)
Q Consensus 19 ps~~~v~~llks~~~~~VRiY~~d---~~vL~A~~~--~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~~~I~ 93 (342)
-+++++.+.+ +.|.+.|++|-++ ++-|+++++ .+++++. +. . + +.+.+..|++. .+.
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a-tG--G---I--~~~N~~~~l~a---------Ga~ 178 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV-TG--G---V--NLDNVKDWFAA---------GAD 178 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE-EC--C---C--CHHHHHHHHHC---------CCc
Confidence 3678877776 4689999999655 466777775 3466553 11 1 1 23455667653 356
Q ss_pred EEEeeeeeecCCCcchHHHHHHHHHHHHHHHH
Q 041112 94 GIAVGNEILGGTDLELSEVLLPAAKNVYSALE 125 (342)
Q Consensus 94 ~I~VGNE~l~~~~~~~~~~Lv~am~~v~~aL~ 125 (342)
.|.||...+..........+-...+.++++++
T Consensus 179 ~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 179 AVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 78899887643211124556666666666554
No 110
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.59 E-value=2.7e+02 Score=27.11 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred HHHhCCcCEEEEecCC-hHHHHHhhcCCCEEEEEeCCcc-c---------------chh-----hhhHHHHHHHHHHhcc
Q 041112 27 LLKAAKIKNIRIYDAD-QAVLKAFSGSGIEIIVGLGNEN-L---------------KDI-----SVGEDRAMNWIKANVD 84 (342)
Q Consensus 27 llks~~~~~VRiY~~d-~~vL~A~~~~gi~v~vGv~n~~-l---------------~~l-----a~~~~~A~~wv~~~v~ 84 (342)
+.+..-++-.=+|.-+ ....++++..|+++.-|-.--. + +.+ ..+...|..|+.....
T Consensus 142 ~A~~Re~SEp~~w~~~~~~~~~~~~~~g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y~ 221 (302)
T PRK12702 142 RAQKREYSEIFSYSGDPARLREAFAQQEANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCYQ 221 (302)
T ss_pred HHHhccCCcceEecCCHHHHHHHHHHcCCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHHHHHHHH
Confidence 3344445555556444 3457888899999888764221 1 122 2366788999988876
Q ss_pred CCCCCceEEEEEeeee
Q 041112 85 PYLPGTKIRGIAVGNE 100 (342)
Q Consensus 85 ~~~~~~~I~~I~VGNE 100 (342)
..+ ..|++|.+|.-
T Consensus 222 ~~~--~~~~tiaLGDs 235 (302)
T PRK12702 222 RHL--GPIKALGIGCS 235 (302)
T ss_pred hcc--CCceEEEecCC
Confidence 654 57899999953
No 111
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=21.04 E-value=5.5e+02 Score=25.26 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHH-HHHHcCCCCceEEeccccccccccCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecCCCcccc
Q 041112 110 SEVLLPAAKNVYS-ALERLGLAKLIEVSSPHSEAVFANSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFLAYK 188 (342)
Q Consensus 110 ~~~Lv~am~~v~~-aL~~~gl~~~IkVsT~~~~~vl~~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf~~~ 188 (342)
.-++...|.|.-+ .+...||...|-.-|-.+++.-...|.|.+|.=+ +| +-.|.+-+. |.-+
T Consensus 112 m~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~cAAHyTpNaGd~t---------VL----qydDV~KiD----fGth 174 (397)
T KOG2775|consen 112 MIEICETIENTTRKLILENGLNAGIGFPTGCSLNHCAAHYTPNAGDKT---------VL----KYDDVMKID----FGTH 174 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccCCCcccccchhhhcCCCCCCce---------ee----eecceEEEe----cccc
Confidence 4567777776544 5667788877877788887777777888888632 01 122233233 1111
Q ss_pred CCCCcccccccccccCCceecCCCCcccchHHHHHHHHHHHHHHHhCCCCCcEEEeeec
Q 041112 189 NDPEHIDLNYATFKSNRGIHDAKTNLHYDNMFDAMVDAAYAALEKAGFPKMDVIVSETG 247 (342)
Q Consensus 189 ~~~~~~~~~yalf~~~~~~~d~~~~~~y~n~fda~~da~~~a~~~~g~~~~~ivVtEtG 247 (342)
.+..- +|-|| .+.. .-.|.+|+.|.-+|.+.-++.+| +.|-+.+.|
T Consensus 175 i~GrI--iDsAF------Tv~F--~p~~d~Ll~AvreaT~tGIkeaG---iDvRlcdiG 220 (397)
T KOG2775|consen 175 IDGRI--IDSAF------TVAF--NPKYDPLLAAVREATNTGIKEAG---IDVRLCDIG 220 (397)
T ss_pred ccCeE--eeeee------EEee--CccccHHHHHHHHHHhhhhhhcC---ceeeehhhh
Confidence 11111 22222 1110 12488888888888888887765 455555544
No 112
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.03 E-value=5.1e+02 Score=23.66 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhCCcCEEEEecCCh--------HHHHHhh-cCCCEEEEEeCCcccchhhhhHHHHHHHHHHhccCCCCCc
Q 041112 20 SPESVVTLLKAAKIKNIRIYDADQ--------AVLKAFS-GSGIEIIVGLGNENLKDISVGEDRAMNWIKANVDPYLPGT 90 (342)
Q Consensus 20 s~~~v~~llks~~~~~VRiY~~d~--------~vL~A~~-~~gi~v~vGv~n~~l~~la~~~~~A~~wv~~~v~~~~~~~ 90 (342)
+|.++++.++..|++.+=+.|.|. .+++.+. ..+++|.+|-.... .+.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHHc---------
Confidence 688899999999999999998762 4565554 46889999876432 2333444432
Q ss_pred eEEEEEeeeeeecC
Q 041112 91 KIRGIAVGNEILGG 104 (342)
Q Consensus 91 ~I~~I~VGNE~l~~ 104 (342)
-...|+||.|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 13457899999864
No 113
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=20.89 E-value=2e+02 Score=26.10 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=34.2
Q ss_pred HHHHHhCCcCEEEEecCChHHHHHhhcCCCEEEEEeCCc
Q 041112 25 VTLLKAAKIKNIRIYDADQAVLKAFSGSGIEIIVGLGNE 63 (342)
Q Consensus 25 ~~llks~~~~~VRiY~~d~~vL~A~~~~gi~v~vGv~n~ 63 (342)
.+.|+-.|+++||+-..+|.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578889999999999999988889999999998888753
No 114
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.57 E-value=1.3e+02 Score=30.63 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=29.4
Q ss_pred HHHHHH-HH---HhCCcCEEEEecC--Ch----HHHHHhhcCCCEEEEEeC
Q 041112 21 PESVVT-LL---KAAKIKNIRIYDA--DQ----AVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 21 ~~~v~~-ll---ks~~~~~VRiY~~--d~----~vL~A~~~~gi~v~vGv~ 61 (342)
+++|++ +. -.+|++.+|+||+ |. ..++|.+.+|..+-..+.
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 456654 33 3599999999998 33 357888889987766664
No 115
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.55 E-value=7.9e+02 Score=24.88 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHH---hCCcCEEEEecCC---------------hHHHHHhhc-CCC-EEEEEeCCcccchhhhhHHHHHH
Q 041112 18 IPSPESVVTLLK---AAKIKNIRIYDAD---------------QAVLKAFSG-SGI-EIIVGLGNENLKDISVGEDRAMN 77 (342)
Q Consensus 18 lps~~~v~~llk---s~~~~~VRiY~~d---------------~~vL~A~~~-~gi-~v~vGv~n~~l~~la~~~~~A~~ 77 (342)
.-++++|++.++ ..|++.|.+++.+ .++|+++.. .|+ ++-++..+ ...+. .+..+
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~--p~~i~--~ell~- 250 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPH--PKDIA--PEVIE- 250 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCC--cccCC--HHHHH-
Confidence 456788765443 4688899887632 135565554 344 23333211 11121 11111
Q ss_pred HHHHhccCCCCCceEEEEEeeeeeec-----C-CCcchHHHHHHHHHHHHHHHHHcCCCCceEEeccccccccccCCCCC
Q 041112 78 WIKANVDPYLPGTKIRGIAVGNEILG-----G-TDLELSEVLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFANSFPPS 151 (342)
Q Consensus 78 wv~~~v~~~~~~~~I~~I~VGNE~l~-----~-~~~~~~~~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~~s~pPS 151 (342)
.++. . + ....+|.+|=|-.. . +......+...+++.+|++. ..+.++|.. +. ++|
T Consensus 251 ~l~~----~-~-~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------~~i~i~~d~----Iv-G~P-- 311 (446)
T PRK14337 251 AFGE----L-P-NLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR------PDIALTTDL----IV-GFP-- 311 (446)
T ss_pred HHHh----C-C-cccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhC------CCCeEEEeE----EE-ECC--
Confidence 1221 1 1 12456677654332 1 11123567777777777663 125556553 21 243
Q ss_pred ccccchhhhHHhHHHHHHhhhcCCCeEeecCCCc
Q 041112 152 ACVFREDVSQFMKPLLQFFSQIGSPFYINAYPFL 185 (342)
Q Consensus 152 ~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiyPyf 185 (342)
| +-.+.+...++|+.+.+ +-.+++|+|=
T Consensus 312 -g----ET~ed~~~tl~~l~~~~-~~~~~~f~ys 339 (446)
T PRK14337 312 -G----ETEEDFEQTLEAMRTVG-FASSFSFCYS 339 (446)
T ss_pred -C----CCHHHHHHHHHHHHhcC-CCeeEEEecC
Confidence 1 22366788899987765 4567776663
No 116
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=20.24 E-value=1.9e+02 Score=34.14 Aligned_cols=46 Identities=30% Similarity=0.362 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHhCCcCEEEEecCC-----hHHHHHhhcCCCEEEEEeC
Q 041112 16 DNIPSPESVVTLLKAAKIKNIRIYDAD-----QAVLKAFSGSGIEIIVGLG 61 (342)
Q Consensus 16 ~nlps~~~v~~llks~~~~~VRiY~~d-----~~vL~A~~~~gi~v~vGv~ 61 (342)
+-..+|+++++..+..|.+.|-|-|-+ ++...+++..||+|+.|+-
T Consensus 347 Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE 397 (1437)
T PRK00448 347 DAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVE 397 (1437)
T ss_pred ccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeee
Confidence 345688999999999999999998876 4667778889999999984
No 117
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=20.10 E-value=4.4e+02 Score=24.17 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCceEEeccccccccc----cCCCCCccccchhhhHHhHHHHHHhhhcCCCeEeecC
Q 041112 112 VLLPAAKNVYSALERLGLAKLIEVSSPHSEAVFA----NSFPPSACVFREDVSQFMKPLLQFFSQIGSPFYINAY 182 (342)
Q Consensus 112 ~Lv~am~~v~~aL~~~gl~~~IkVsT~~~~~vl~----~s~pPS~g~f~~~~~~~~~~~ldfl~~~~s~~~vNiy 182 (342)
.+-...+.+++.|...++.+.|.|......-++. --|++.+..-+++....|..+.++|......+.|.-|
T Consensus 82 ~~~~l~~~l~~~l~~~~~~~~v~v~~~~~g~~i~l~~~v~F~~gsa~L~~~~~~~L~~ia~~l~~~~~~I~I~Gh 156 (230)
T PRK06925 82 QLDELLKKVNEYIEENELKSVITAKRDERGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGH 156 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEeCCEEEEEeCCCcccCCCccccCHhHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3445677888889888988878766554433332 1266666666677677888888888766555555544
Done!