Your job contains 1 sequence.
>041113
MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI
QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI
LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI
EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM
MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV
ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA
ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN
HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF
SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG
YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF
PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA
SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF
GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA
IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV
MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI
CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA
VSGSARCISIDLPGHGGSKMQNH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041113
(983 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2205450 - symbol:PHYLLO "PHYLLO" species:3702 ... 3085 0. 1
TIGR_CMR|SO_4573 - symbol:SO_4573 "2-succinyl-6-hydroxy-2... 196 1.2e-26 2
TIGR_CMR|BA_5111 - symbol:BA_5111 "2-succinyl-6-hydroxy-2... 205 3.0e-24 2
UNIPROTKB|P17109 - symbol:menD "MenD" species:83333 "Esch... 220 5.8e-18 2
UNIPROTKB|Q9KQM3 - symbol:menD "2-succinyl-5-enolpyruvyl-... 197 2.9e-17 2
TIGR_CMR|VC_1975 - symbol:VC_1975 "2-succinyl-6-hydroxy-2... 197 2.9e-17 2
UNIPROTKB|Q9KQM6 - symbol:menC "o-succinylbenzoate syntha... 186 1.6e-16 2
TIGR_CMR|VC_1972 - symbol:VC_1972 "O-succinylbenzoate-CoA... 186 1.6e-16 2
UNIPROTKB|O06421 - symbol:menD "2-succinyl-5-enolpyruvyl-... 200 2.8e-13 2
TIGR_CMR|SO_4575 - symbol:SO_4575 "O-succinylbenzoate-CoA... 189 1.8e-11 1
UNIPROTKB|Q81PF7 - symbol:BAS2659 "Mandelate racemase/muc... 168 3.2e-09 1
TIGR_CMR|BA_2850 - symbol:BA_2850 "mandelate racemase/muc... 168 3.2e-09 1
UNIPROTKB|P29208 - symbol:menC "o-succinylbenzoate syntha... 160 1.1e-08 2
UNIPROTKB|P65425 - symbol:menC "Probable o-succinylbenzoa... 146 7.5e-07 1
UNIPROTKB|Q71WQ8 - symbol:LMOf2365_2493 "N-acylamino acid... 131 2.9e-06 2
TIGR_CMR|BA_0339 - symbol:BA_0339 "mandelate racemase/muc... 137 3.2e-06 2
UNIPROTKB|P27099 - symbol:tcbD "Chloromuconate cycloisome... 138 7.6e-06 1
UNIPROTKB|Q81K98 - symbol:BAS4746 "N-acylamino acid racem... 120 1.7e-05 2
TIGR_CMR|BA_5107 - symbol:BA_5107 "N-acylamino acid racem... 120 1.7e-05 2
UNIPROTKB|Q881I2 - symbol:PSPTO_2911 "Mandelate racemase/... 135 2.1e-05 1
TIGR_CMR|SPO_1595 - symbol:SPO_1595 "mandelate racemase/m... 118 0.00018 2
TIGR_CMR|SPO_A0378 - symbol:SPO_A0378 "mandelate racemase... 121 0.00035 2
>TAIR|locus:2205450 [details] [associations]
symbol:PHYLLO "PHYLLO" species:3702 "Arabidopsis
thaliana" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0009063 "cellular amino acid
catabolic process" evidence=IEA] [GO:0009234 "menaquinone
biosynthetic process" evidence=IEA] [GO:0016836 "hydro-lyase
activity" evidence=IEA] [GO:0030976 "thiamine pyrophosphate
binding" evidence=IEA] [GO:0070204
"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid
synthase activity" evidence=IEA] [GO:0042372 "phylloquinone
biosynthetic process" evidence=IMP] [GO:0042550 "photosystem I
stabilization" evidence=IMP] InterPro:IPR004433 InterPro:IPR010196
InterPro:IPR011766 InterPro:IPR012001 InterPro:IPR018110
Pfam:PF02775 Pfam:PF02776 PROSITE:PS00908 PROSITE:PS00909
Pfam:PF01188 GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000287 GO:GO:0031969 eggNOG:COG0596 GO:GO:0009063
InterPro:IPR013342 SMART:SM00922 GO:GO:0030976 GO:GO:0016836
EMBL:AC011665 GO:GO:0042550 GO:GO:0042372 GO:GO:0009234
TIGRFAMs:TIGR01927 GO:GO:0070204 TIGRFAMs:TIGR00173 GO:GO:0070205
EMBL:DQ084385 EMBL:DQ084386 EMBL:AK226959 IPI:IPI00523917
IPI:IPI01007559 PIR:D96713 PIR:E96713 RefSeq:NP_177055.2
UniGene:At.35470 HSSP:P29208 ProteinModelPortal:Q15KI9
MEROPS:S33.A36 PaxDb:Q15KI9 PRIDE:Q15KI9 GeneID:843222
KEGG:ath:AT1G68890 TAIR:At1g68890 HOGENOM:HOG000083101
InParanoid:Q15KI9 KO:K14759 OMA:HTEDEIW Genevestigator:Q15KI9
Uniprot:Q15KI9
Length = 1715
Score = 3085 (1091.0 bits), Expect = 0., P = 0.
Identities = 595/983 (60%), Positives = 756/983 (76%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ E E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILHYQKE--ENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
>TIGR_CMR|SO_4573 [details] [associations]
symbol:SO_4573
"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid
synthase/2-oxoglutarate decarboxylase" species:211586 "Shewanella
oneidensis MR-1" [GO:0008683 "2-oxoglutarate decarboxylase
activity" evidence=ISS] [GO:0009234 "menaquinone biosynthetic
process" evidence=ISS] [GO:0016833 "oxo-acid-lyase activity"
evidence=ISS] HAMAP:MF_01659 InterPro:IPR004433 InterPro:IPR011766
InterPro:IPR012001 Pfam:PF02775 Pfam:PF02776 PIRSF:PIRSF004983
UniPathway:UPA00079 GO:GO:0046872 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0030976 GO:GO:0009234
eggNOG:COG1165 KO:K02551 OMA:DGGGIFH ProtClustDB:PRK07449
GO:GO:0070204 PANTHER:PTHR18968:SF3 TIGRFAMs:TIGR00173
HOGENOM:HOG000218360 RefSeq:NP_720089.1 ProteinModelPortal:Q8E8T4
GeneID:1172158 KEGG:son:SO_4573 PATRIC:23528813 Uniprot:Q8E8T4
Length = 573
Score = 196 (74.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 83/306 (27%), Positives = 128/306 (41%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWM-----SSCLKGLDIWTSSIEP 55
M+LTTLD AV T PVHINC +REPL S S LK L W P
Sbjct: 149 MLLTTLDEAVANQTR----PVHINCMYREPLYPSELTATILDSESPYLKPLQTWLQQARP 204
Query: 56 FTKY-IQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRW 114
+T Y + Q SH + ++ V G KG+++ G + E + ++ L++ I W
Sbjct: 205 YTIYGKREQLSHPSED-------AIMRFVHG--KGVIIAGTLTPEQDPQQLIALSQKIGW 255
Query: 115 PVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ-FDVIIQIGSRITS 173
P++ D S LR Q+ + ++D L ++ +Q D ++ G R+ S
Sbjct: 256 PLLTDAQSQLR------------QHPAAIGNIDQLLQHPKARNLLQEADRVLVFGGRLLS 303
Query: 174 KRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS 233
KR+ + E +Y V R DPSH+ H + QF S+ W +
Sbjct: 304 KRLIAYLAEQNWHSYWQVLPQQDRLDPSHNAKHIWHANAAQFAQLNW---YRSSSANWAN 360
Query: 234 FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
L + + + + E V ++ LF+GNS+ +R DMY
Sbjct: 361 TLITYNDDL-HHLFVRNIDQGEFGEAQVIRAIANTRPLEQQLFIGNSLPVRLYDMYAPV- 418
Query: 294 TTCTHT 299
+ CT T
Sbjct: 419 SCCTAT 424
Score = 191 (72.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 45/130 (34%), Positives = 67/130 (51%)
Query: 319 NRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINN 378
NRGASGIDGLL+TA G A K ++GD+S LHD N AI R P++++++NN
Sbjct: 428 NRGASGIDGLLATACGIAAHQGKPTSLIIGDLSQLHDLNSFAIA--RSLTSPLVIIILNN 485
Query: 379 HGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ 438
GG IF+LLP+ + + Y+ +H + L + QV + + + +
Sbjct: 486 DGGNIFNLLPVPNE---ELRSDYYRLSHGLEFGYAAAMFNLPYNQVDNLADFQTCYNEAL 542
Query: 439 HLGTDRVIEV 448
VIEV
Sbjct: 543 DFQGASVIEV 552
>TIGR_CMR|BA_5111 [details] [associations]
symbol:BA_5111
"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid
synthase/2-oxoglutarate decarboxylase" species:198094 "Bacillus
anthracis str. Ames" [GO:0008683 "2-oxoglutarate decarboxylase
activity" evidence=ISS] [GO:0009234 "menaquinone biosynthetic
process" evidence=ISS] [GO:0016833 "oxo-acid-lyase activity"
evidence=ISS] HAMAP:MF_01659 InterPro:IPR004433 InterPro:IPR011766
InterPro:IPR012001 Pfam:PF02775 Pfam:PF02776 PIRSF:PIRSF004983
UniPathway:UPA00079 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0030976 GO:GO:0009234
RefSeq:NP_847297.1 RefSeq:YP_021762.1 RefSeq:YP_030994.1
ProteinModelPortal:Q81K94 IntAct:Q81K94 DNASU:1084421
EnsemblBacteria:EBBACT00000012307 EnsemblBacteria:EBBACT00000018393
EnsemblBacteria:EBBACT00000021042 GeneID:1084421 GeneID:2817001
GeneID:2851454 KEGG:ban:BA_5111 KEGG:bar:GBAA_5111 KEGG:bat:BAS4750
eggNOG:COG1165 HOGENOM:HOG000218359 KO:K02551 OMA:DGGGIFH
ProtClustDB:PRK07449 BioCyc:BANT260799:GJAJ-4804-MONOMER
BioCyc:BANT261594:GJ7F-4963-MONOMER GO:GO:0070204
PANTHER:PTHR18968:SF3 TIGRFAMs:TIGR00173 Uniprot:Q81K94
Length = 584
Score = 205 (77.2 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 53/151 (35%), Positives = 84/151 (55%)
Query: 314 IRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
I+V NRG +GIDG++STA+G ++ C+ VL V+GD+SF HD NGL L ++ I +
Sbjct: 424 IQVMANRGVNGIDGIISTALGASMICDPLVL-VIGDLSFYHDLNGL--LAAKLHELNITI 480
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V+NN GG IFS LP ++ E + F T + +++ +G + +V + E
Sbjct: 481 VVVNNDGGGIFSFLPQYEKKEH--FESLFGTPIGLDYEHVVTMYGGSFSRVNGWEQFRE- 537
Query: 434 LSMSQHLGTDRVIEVESCI--DANATFHSML 462
+ + + T+ + VE C D N T H L
Sbjct: 538 -EVQKGVTTEGLHVVEICTNRDENLTLHRTL 567
Score = 159 (61.0 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 52/205 (25%), Positives = 93/205 (45%)
Query: 86 VNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLD 144
+ KGL++ G H+E +A LA +P++AD LS +R + +D
Sbjct: 222 MEKGLIICGDDSHSEIAAFAT-QLAEKTGYPILADPLSNIRSGH--------HDKTMVID 272
Query: 145 HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSV 204
D L +E +K+ + DV+I+ G SK ++Q I++ +I+VD DP+
Sbjct: 273 CYDTFLRNELLKETWKPDVLIRFGGMPVSKALTQFIKKQTKAVHIVVDESGQWRDPALVA 332
Query: 205 THRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHE 264
T +Q++ + F L++ + + W + ++ + D + E V +
Sbjct: 333 TEVVQASDIAFCSALIEKMPVMKKNDWFRMWQHINEKTKETLREMETYDTAF-EGRVITD 391
Query: 265 LSRALTSNSALFVGNSMAIRDLDMY 289
+ R L + LF NSM IRD D +
Sbjct: 392 IVRVLPEGATLFASNSMPIRDTDSF 416
Score = 99 (39.9 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 38/124 (30%), Positives = 57/124 (45%)
Query: 3 LTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQV 62
LTT + A +P GPVH+N P REPL P + S +W +T V
Sbjct: 152 LTT-QRMIASACLAPQGPVHLNFPVREPL--IPDFSLES------LWDKGRGEYTGV--V 200
Query: 63 QHSHACKSYTYCQMAEVLELVQGVNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADIL 121
Q +A Y ++ + + KGL++ G H+E +A LA +P++AD L
Sbjct: 201 QQGNAVMPSEYVD--SLVGRLSHMEKGLIICGDDSHSEIAAFAT-QLAEKTGYPILADPL 257
Query: 122 SGLR 125
S +R
Sbjct: 258 SNIR 261
>UNIPROTKB|P17109 [details] [associations]
symbol:menD "MenD" species:83333 "Escherichia coli K-12"
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0070204
"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid
synthase activity" evidence=IEA;IDA] [GO:0030976 "thiamine
pyrophosphate binding" evidence=IEA;IDA] [GO:0019142
"2-hydroxyglutarate synthase activity" evidence=ISS] [GO:0009234
"menaquinone biosynthetic process" evidence=IEA;IMP] HAMAP:MF_01659
InterPro:IPR004433 InterPro:IPR011766 InterPro:IPR012001
Pfam:PF02775 Pfam:PF02776 PIRSF:PIRSF004983 UniPathway:UPA00079
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0030976 GO:GO:0009234
EMBL:L35030 eggNOG:COG1165 KO:K02551 OMA:DGGGIFH
ProtClustDB:PRK07449 GO:GO:0070204 PANTHER:PTHR18968:SF3
TIGRFAMs:TIGR00173 EMBL:U54790 EMBL:M21787 EMBL:L04464 PIR:F64997
RefSeq:NP_416767.1 RefSeq:YP_490504.1 PDB:2JLA PDB:2JLC PDB:3FLM
PDB:3HWW PDB:3HWX PDBsum:2JLA PDBsum:2JLC PDBsum:3FLM PDBsum:3HWW
PDBsum:3HWX ProteinModelPortal:P17109 SMR:P17109 DIP:DIP-10185N
MINT:MINT-1246688 PRIDE:P17109 EnsemblBacteria:EBESCT00000001976
EnsemblBacteria:EBESCT00000016980 GeneID:12931512 GeneID:946720
KEGG:ecj:Y75_p2228 KEGG:eco:b2264 PATRIC:32119895 EchoBASE:EB0574
EcoGene:EG10579 HOGENOM:HOG000218360 BioCyc:EcoCyc:MEND-MONOMER
BioCyc:ECOL316407:JW5374-MONOMER BioCyc:MetaCyc:MEND-MONOMER
SABIO-RK:P17109 EvolutionaryTrace:P17109 Genevestigator:P17109
Uniprot:P17109
Length = 556
Score = 220 (82.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 68/208 (32%), Positives = 102/208 (49%)
Query: 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMY---GRNWTTCTHTVADIMLNSEFPHQWIR 315
P +A + +A+ + F +A R D G+ + + V I S+ P +
Sbjct: 350 PRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGY-P 408
Query: 316 VAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375
V NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V
Sbjct: 409 VYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIV 466
Query: 376 INNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALS 435
+NN+GG IFSLLP R ++ N+ ++ L + + + ELE A +
Sbjct: 467 VNNNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFA 522
Query: 436 MSQHLGTDRVIE-VESCIDANATFHSML 462
+ T VIE V + D T +L
Sbjct: 523 DAWRTPTTTVIEMVVNDTDGAQTLQQLL 550
Score = 157 (60.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 53/201 (26%), Positives = 92/201 (45%)
Query: 88 KGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLD-HL 146
+G+++ G + E+ L A+ + WP++ D+LS +T Q + D L
Sbjct: 221 RGVVVAGRMSAEEGKKVALW-AQTLGWPLIGDVLS------------QTGQPLPCADLWL 267
Query: 147 DHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTH 206
+A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R DP+H H
Sbjct: 268 GNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAH---H 321
Query: 207 RIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELS 266
R + I D+L ++ + WC + L + I + E +AH +
Sbjct: 322 RGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFGEAQLAHRIC 377
Query: 267 RALTSNSALFVGNSMAIRDLD 287
L LFVGNS+ +R +D
Sbjct: 378 DYLPEQGQLFVGNSLVVRLID 398
Score = 82 (33.9 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++T+D A+ + G VHINCPF EPL S + L W +P+ +
Sbjct: 148 LVSTIDHALGTLHA---GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAP 204
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
S + + + + +G+++ G + E+ L A+ + WP++ D+L
Sbjct: 205 RLESEKQRDWFFWRQ----------KRGVVVAGRMSAEEGKKVALW-AQTLGWPLIGDVL 253
Query: 122 S 122
S
Sbjct: 254 S 254
>UNIPROTKB|Q9KQM3 [details] [associations]
symbol:menD
"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008683 "2-oxoglutarate decarboxylase activity"
evidence=ISS] [GO:0009234 "menaquinone biosynthetic process"
evidence=ISS] [GO:0016833 "oxo-acid-lyase activity" evidence=ISS]
HAMAP:MF_01659 InterPro:IPR004433 InterPro:IPR011766
InterPro:IPR012001 Pfam:PF02775 Pfam:PF02776 PIRSF:PIRSF004983
UniPathway:UPA00079 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0030976 GO:GO:0016833 GO:GO:0009234
GO:GO:0008683 eggNOG:COG1165 KO:K02551 OMA:DGGGIFH
ProtClustDB:PRK07449 GO:GO:0070204 PANTHER:PTHR18968:SF3
TIGRFAMs:TIGR00173 PIR:A82135 RefSeq:NP_231609.1
ProteinModelPortal:Q9KQM3 DNASU:2613479 GeneID:2613479
KEGG:vch:VC1975 PATRIC:20082986 Uniprot:Q9KQM3
Length = 570
Score = 197 (74.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 92/321 (28%), Positives = 150/321 (46%)
Query: 145 HLDHALLSESVKDWI-QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR-HDPSH 202
H D L ++ + Q ++Q GSRI SKR+ Q +E C L + H H +
Sbjct: 266 HFDLWLQHPKAREQLNQAQCVVQFGSRIVSKRLLQWLEAW--CATGLGEYHYIAPHSARN 323
Query: 203 SVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVA 262
+ H +Q Q+V ++ H W + L +A + + Q AD
Sbjct: 324 NPWHAMQQ---QWV-----CEISH----WVDAV--LSKRLAGQHTQQGWADELTHYAQSV 369
Query: 263 HELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI-------- 314
+L++ S+S+L + +A+ LD+ R T AD+ L + + +
Sbjct: 370 RQLAQLHFSSSSL---SEVALA-LDLTERA------TQADLFLGNSLIVRLVDIFSALDG 419
Query: 315 -RVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
V NRGASGIDGL++TA G K +L ++GD S L+D N LA++ R +P ++
Sbjct: 420 REVFSNRGASGIDGLVATASGVQRARQKPLLMLLGDTSLLYDLNSLALM--RNPAQPTVI 477
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V NN GGAIF LLP+ +E R + + H + + GL + +T +E +
Sbjct: 478 VVTNNDGGAIFDLLPVP--SEQR--EALYQMPHGMDFAHAASQFGLAYCAAQT-LEHYQT 532
Query: 434 LSMSQHL----GTDRVIEVES 450
L + +H GT +IEV++
Sbjct: 533 L-VEEHFAHGAGT-LLIEVKT 551
Score = 100 (40.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWM-SSCLKGLDIWTSSIEPFTKYI 60
+LT++D + + G VHINCPF EPL ++ + L+ + W P+T
Sbjct: 150 LLTSIDEVMA-RQALLGGSVHINCPFPEPLYSAGDEAIYQPYLQPVQRWREQARPYT--- 205
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGV-NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVAD 119
QV H +S V + G+ KG+++VG++ + E A A+ + WP++ D
Sbjct: 206 QV-HQGLVQS--------VPAAIDGLLTKGVVIVGSLSLQ-EAQAAKRFAKAMGWPLLCD 255
Query: 120 ILSGL 124
SG+
Sbjct: 256 PQSGI 260
Score = 39 (18.8 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 106 LHLARHIRWPVVADILSGLRLRKLLASFLETE 137
L LA+ + PV + SG + LL + E++
Sbjct: 65 LGLAKASQQPVAVIVTSGTAVANLLPAIAESK 96
>TIGR_CMR|VC_1975 [details] [associations]
symbol:VC_1975
"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase/2-oxoglutarate decarboxylase" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0008683 "2-oxoglutarate decarboxylase
activity" evidence=ISS] [GO:0009234 "menaquinone biosynthetic
process" evidence=ISS] [GO:0016833 "oxo-acid-lyase activity"
evidence=ISS] HAMAP:MF_01659 InterPro:IPR004433 InterPro:IPR011766
InterPro:IPR012001 Pfam:PF02775 Pfam:PF02776 PIRSF:PIRSF004983
UniPathway:UPA00079 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0030976 GO:GO:0016833 GO:GO:0009234
GO:GO:0008683 eggNOG:COG1165 KO:K02551 OMA:DGGGIFH
ProtClustDB:PRK07449 GO:GO:0070204 PANTHER:PTHR18968:SF3
TIGRFAMs:TIGR00173 PIR:A82135 RefSeq:NP_231609.1
ProteinModelPortal:Q9KQM3 DNASU:2613479 GeneID:2613479
KEGG:vch:VC1975 PATRIC:20082986 Uniprot:Q9KQM3
Length = 570
Score = 197 (74.4 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 92/321 (28%), Positives = 150/321 (46%)
Query: 145 HLDHALLSESVKDWI-QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR-HDPSH 202
H D L ++ + Q ++Q GSRI SKR+ Q +E C L + H H +
Sbjct: 266 HFDLWLQHPKAREQLNQAQCVVQFGSRIVSKRLLQWLEAW--CATGLGEYHYIAPHSARN 323
Query: 203 SVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVA 262
+ H +Q Q+V ++ H W + L +A + + Q AD
Sbjct: 324 NPWHAMQQ---QWV-----CEISH----WVDAV--LSKRLAGQHTQQGWADELTHYAQSV 369
Query: 263 HELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI-------- 314
+L++ S+S+L + +A+ LD+ R T AD+ L + + +
Sbjct: 370 RQLAQLHFSSSSL---SEVALA-LDLTERA------TQADLFLGNSLIVRLVDIFSALDG 419
Query: 315 -RVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILM 373
V NRGASGIDGL++TA G K +L ++GD S L+D N LA++ R +P ++
Sbjct: 420 REVFSNRGASGIDGLVATASGVQRARQKPLLMLLGDTSLLYDLNSLALM--RNPAQPTVI 477
Query: 374 LVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEA 433
+V NN GGAIF LLP+ +E R + + H + + GL + +T +E +
Sbjct: 478 VVTNNDGGAIFDLLPVP--SEQR--EALYQMPHGMDFAHAASQFGLAYCAAQT-LEHYQT 532
Query: 434 LSMSQHL----GTDRVIEVES 450
L + +H GT +IEV++
Sbjct: 533 L-VEEHFAHGAGT-LLIEVKT 551
Score = 100 (40.3 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 36/125 (28%), Positives = 61/125 (48%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWM-SSCLKGLDIWTSSIEPFTKYI 60
+LT++D + + G VHINCPF EPL ++ + L+ + W P+T
Sbjct: 150 LLTSIDEVMA-RQALLGGSVHINCPFPEPLYSAGDEAIYQPYLQPVQRWREQARPYT--- 205
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGV-NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVAD 119
QV H +S V + G+ KG+++VG++ + E A A+ + WP++ D
Sbjct: 206 QV-HQGLVQS--------VPAAIDGLLTKGVVIVGSLSLQ-EAQAAKRFAKAMGWPLLCD 255
Query: 120 ILSGL 124
SG+
Sbjct: 256 PQSGI 260
Score = 39 (18.8 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 106 LHLARHIRWPVVADILSGLRLRKLLASFLETE 137
L LA+ + PV + SG + LL + E++
Sbjct: 65 LGLAKASQQPVAVIVTSGTAVANLLPAIAESK 96
>UNIPROTKB|Q9KQM6 [details] [associations]
symbol:menC "o-succinylbenzoate synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009234 "menaquinone
biosynthetic process" evidence=ISS] HAMAP:MF_00470
InterPro:IPR010196 UniPathway:UPA00079 Pfam:PF01188 GO:GO:0003824
GO:GO:0000287 EMBL:AE003852 GenomeReviews:AE003852_GR
InterPro:IPR013342 SMART:SM00922 GO:GO:0016836 GO:GO:0009234
KO:K02549 eggNOG:COG1441 OMA:YEANRDG ProtClustDB:PRK05105
TIGRFAMs:TIGR01927 PIR:F82134 RefSeq:NP_231606.1
ProteinModelPortal:Q9KQM6 SMR:Q9KQM6 DNASU:2613476 GeneID:2613476
KEGG:vch:VC1972 PATRIC:20082980 Uniprot:Q9KQM6
Length = 332
Score = 186 (70.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/169 (30%), Positives = 88/169 (52%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P E+ + L G K+KV +PI+D ++ + + + LR+DANR WT
Sbjct: 116 PDELLPVLNNL--PGQKVAKVKVGLY-EPIRDGMLVNLFLESMPD-LTLRLDANRAWTPA 171
Query: 716 EALEFGFLIKDC---DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+AL+F + + ++EEP Q+ + I + ++G+ +A DET+ + +D LE
Sbjct: 172 KALKFAQYVAPSLRSRIAFLEEPCQSPSESIAFSIDTGIAIAWDETLQEAVRDADFALEN 231
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
G+ IVIKP++IG + A+ G AV+S++ ES LGL+
Sbjct: 232 LL--GVKTIVIKPTLIGSVYRVEALIEKAKTLGLQAVISSSLESSLGLN 278
Score = 93 (37.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 31/77 (40%), Positives = 40/77 (51%)
Query: 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEE 559
+LYR QL P S I N REGFI+ L E+G GE+APL +E L DA
Sbjct: 5 TLYRYQL--PMDSGVILRNEKLTQREGFIVEL-TENGRTARGEIAPLPGFSRETLEDAGL 61
Query: 560 QLRFLLH-FMTGAKISY 575
Q + LL ++ G I +
Sbjct: 62 QAQALLEQWVKGHAIEW 78
>TIGR_CMR|VC_1972 [details] [associations]
symbol:VC_1972 "O-succinylbenzoate-CoA synthase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009234 "menaquinone
biosynthetic process" evidence=ISS] HAMAP:MF_00470
InterPro:IPR010196 UniPathway:UPA00079 Pfam:PF01188 GO:GO:0003824
GO:GO:0000287 EMBL:AE003852 GenomeReviews:AE003852_GR
InterPro:IPR013342 SMART:SM00922 GO:GO:0016836 GO:GO:0009234
KO:K02549 eggNOG:COG1441 OMA:YEANRDG ProtClustDB:PRK05105
TIGRFAMs:TIGR01927 PIR:F82134 RefSeq:NP_231606.1
ProteinModelPortal:Q9KQM6 SMR:Q9KQM6 DNASU:2613476 GeneID:2613476
KEGG:vch:VC1972 PATRIC:20082980 Uniprot:Q9KQM6
Length = 332
Score = 186 (70.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/169 (30%), Positives = 88/169 (52%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P E+ + L G K+KV +PI+D ++ + + + LR+DANR WT
Sbjct: 116 PDELLPVLNNL--PGQKVAKVKVGLY-EPIRDGMLVNLFLESMPD-LTLRLDANRAWTPA 171
Query: 716 EALEFGFLIKDC---DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+AL+F + + ++EEP Q+ + I + ++G+ +A DET+ + +D LE
Sbjct: 172 KALKFAQYVAPSLRSRIAFLEEPCQSPSESIAFSIDTGIAIAWDETLQEAVRDADFALEN 231
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
G+ IVIKP++IG + A+ G AV+S++ ES LGL+
Sbjct: 232 LL--GVKTIVIKPTLIGSVYRVEALIEKAKTLGLQAVISSSLESSLGLN 278
Score = 93 (37.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 31/77 (40%), Positives = 40/77 (51%)
Query: 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEE 559
+LYR QL P S I N REGFI+ L E+G GE+APL +E L DA
Sbjct: 5 TLYRYQL--PMDSGVILRNEKLTQREGFIVEL-TENGRTARGEIAPLPGFSRETLEDAGL 61
Query: 560 QLRFLLH-FMTGAKISY 575
Q + LL ++ G I +
Sbjct: 62 QAQALLEQWVKGHAIEW 78
>UNIPROTKB|O06421 [details] [associations]
symbol:menD
"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase" species:1773 "Mycobacterium tuberculosis" [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_01659 InterPro:IPR004433 InterPro:IPR012001 Pfam:PF02776
PIRSF:PIRSF004983 UniPathway:UPA00079 GO:GO:0005886 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0046872 EMBL:BX842573 GO:GO:0030976 GO:GO:0009234
eggNOG:COG1165 HOGENOM:HOG000218359 KO:K02551 ProtClustDB:PRK07449
GO:GO:0070204 PANTHER:PTHR18968:SF3 TIGRFAMs:TIGR00173 PIR:F70548
RefSeq:NP_215069.1 RefSeq:NP_334990.1 RefSeq:YP_006513888.1
ProteinModelPortal:O06421 SMR:O06421 PRIDE:O06421
EnsemblBacteria:EBMYCT00000002000 EnsemblBacteria:EBMYCT00000071602
GeneID:13318429 GeneID:887554 GeneID:924945 KEGG:mtc:MT0581
KEGG:mtu:Rv0555 KEGG:mtv:RVBD_0555 PATRIC:18122978
TubercuList:Rv0555 OMA:ANRPYEM Uniprot:O06421
Length = 554
Score = 200 (75.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 68/246 (27%), Positives = 121/246 (49%)
Query: 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYG 290
W A++ + + Q+ A T HVA +S AL L +G S +RD+ + G
Sbjct: 328 WLDRCAAMNRHAIAAVREQLAAHPLTTGLHVAAAVSHALRPGDQLVLGASNPVRDVALAG 387
Query: 291 RNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV---GCNKHV---- 343
L++ + IRV NRG +GIDG +STAIG A+ G ++
Sbjct: 388 --------------LDT----RGIRVRSNRGVAGIDGTVSTAIGAALAYEGAHERTGSPD 429
Query: 344 -----LCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398
+ ++GD++F+HD++GL I + + ++V N++GG IF LL D +
Sbjct: 430 SPPRTIALIGDLTFVHDSSGLLIGPTEPIPRSLTIVVSNDNGGGIFELLEQGDPRFSDVS 489
Query: 399 DQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEE-ALSMSQHLGTDRVIEVESCIDANAT 457
+ F T H++ + LC A+ HV+ + ++E++E ++ Q RV+EV++ +
Sbjct: 490 SRIFGTPHDVDVGALCRAY---HVESR-QIEVDELGPTLDQPGAGMRVLEVKADRSSLRQ 545
Query: 458 FHSMLR 463
H+ ++
Sbjct: 546 LHAAIK 551
Score = 58 (25.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 8 SAVHWATSSPYGPVHINCPFREPLDNSPK 36
+A A ++ GPVH + P REPL P+
Sbjct: 162 AAATGARTANAGPVHFDIPLREPLVPDPE 190
>TIGR_CMR|SO_4575 [details] [associations]
symbol:SO_4575 "O-succinylbenzoate-CoA synthase"
species:211586 "Shewanella oneidensis MR-1" [GO:0008756
"o-succinylbenzoate-CoA ligase activity" evidence=ISS] [GO:0009234
"menaquinone biosynthetic process" evidence=ISS] InterPro:IPR001354
InterPro:IPR010196 Pfam:PF01188 GO:GO:0000287 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR013342 PANTHER:PTHR13794
SMART:SM00922 GO:GO:0016836 GO:GO:0009234 KO:K02549
HOGENOM:HOG000271247 ProtClustDB:PRK05105 TIGRFAMs:TIGR01927
HSSP:P29208 RefSeq:NP_720091.1 ProteinModelPortal:Q8E8T2
GeneID:1172160 KEGG:son:SO_4575 PATRIC:23528817 OMA:YIEEPCH
Uniprot:Q8E8T2
Length = 374
Score = 189 (71.6 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 83/329 (25%), Positives = 159/329 (48%)
Query: 501 SLYRIQLCAPPTSSYIDHNRSRFC-REGFILSLYLE-DGSVGYGEVAPLEIHKENLLDAE 558
SLY +L P S++ + R R+G +L DG V E++ E+ + + E
Sbjct: 7 SLYLYRL---PLDSFLPVGKQRIDHRKGLVLQAKATADGEVCDTEISNAEVTDSEVTEGE 63
Query: 559 -EQLRFLLHFMTGAKISYFLPLLKGSFSSW--IWSTLGIPACEIF-PSVRCGLEMAILNA 614
++ + ++G I PL S S + L + ++ S+ C LE A +
Sbjct: 64 VKESHVEIAPLSGFDIDQ-QPLSGFSRESLDEVQQALTVLLPKLQNQSIDCLLEQAEASP 122
Query: 615 I-AVKHGSSFLNILYPLTEIDEEISKRSTSIK-ICALIDSNKSPVEVASIATTLVEEGFT 672
++ G S L+ L+ + + +T++ I D+ K+ + +A IA+ ++
Sbjct: 123 YPSIAFGLSLLHA--KLSGKLDAVRPLTTAVPLIYQPTDAPKAEL-IAKIAS--LKPSVR 177
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732
++K+KVA+ + + +I + + ++LR+DAN ++ ++AL+F + ++YI
Sbjct: 178 SVKVKVAQTSME-DELSLIYGILSQRPD-LKLRLDANCGFSLEQALDFAACLPLDSIEYI 235
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
EEP Q+ +D LP ALDE+++ DP + H G+ A++IKP ++G E
Sbjct: 236 EEPCQHPQDNHTLYRAIPLPYALDESLN----DP--DYQFVMHEGLTALIIKPMLLGSIE 289
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ A HG ++S++ ES LG++
Sbjct: 290 KLQRLIDEAHNHGVRCILSSSLESSLGIN 318
>UNIPROTKB|Q81PF7 [details] [associations]
symbol:BAS2659 "Mandelate racemase/muconate lactonizing
enzyme family protein" species:1392 "Bacillus anthracis"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001354
InterPro:IPR026911 Pfam:PF02746 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016855 InterPro:IPR013342
InterPro:IPR013341 PANTHER:PTHR13794 SMART:SM00922
RefSeq:NP_845194.1 RefSeq:YP_019492.1 RefSeq:YP_028918.1
HSSP:O34508 ProteinModelPortal:Q81PF7 DNASU:1084540
EnsemblBacteria:EBBACT00000012257 EnsemblBacteria:EBBACT00000016137
EnsemblBacteria:EBBACT00000020689 GeneID:1084540 GeneID:2817274
GeneID:2850035 KEGG:ban:BA_2850 KEGG:bar:GBAA_2850 KEGG:bat:BAS2659
HOGENOM:HOG000185903 OMA:PIDFIEQ ProtClustDB:CLSK916832
BioCyc:BANT260799:GJAJ-2723-MONOMER
BioCyc:BANT261594:GJ7F-2816-MONOMER PANTHER:PTHR13794:SF16
Uniprot:Q81PF7
Length = 350
Score = 168 (64.2 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 67/228 (29%), Positives = 110/228 (48%)
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNI-LYPLTEIDEEISKRSTSIKICALIDSNKSPVEV 659
PS + +++A+ + H NI LY L +EI T I + +D P +
Sbjct: 97 PSAKAAVDIALYDVYCQYH-----NIPLYALLGGKKEIH---TDITLS--VDE---PFIM 143
Query: 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719
A A VE+GF +K+KV + A D E I+ +R V LR+DAN+ W +EA+
Sbjct: 144 AKEAKQHVEKGFQTLKIKVGKSAH--LDLERIEAIRNSVPKNTTLRLDANQGWNPKEAVS 201
Query: 720 F--GFLIKDCDLQYIEEPVQNEE-DIIKYCEES-GLPVALDETIDKFQKDPLNMLE-KYA 774
++ ++++IE+PV ++ D +KY ++ P+ DE+I D L +++ +Y
Sbjct: 202 IIKEMENRNLNIEFIEQPVHAKDWDGLKYVKDHVQTPIMADESIFS-ASDALKIVQGRY- 259
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ I IK G A IA A+ G +V + ES L +SA
Sbjct: 260 ---VDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSA 304
>TIGR_CMR|BA_2850 [details] [associations]
symbol:BA_2850 "mandelate racemase/muconate lactonizing
enzyme family protein" species:198094 "Bacillus anthracis str.
Ames" [GO:0008150 "biological_process" evidence=ND] [GO:0016855
"racemase and epimerase activity, acting on amino acids and
derivatives" evidence=ISS] InterPro:IPR001354 InterPro:IPR026911
Pfam:PF02746 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016855 InterPro:IPR013342
InterPro:IPR013341 PANTHER:PTHR13794 SMART:SM00922
RefSeq:NP_845194.1 RefSeq:YP_019492.1 RefSeq:YP_028918.1
HSSP:O34508 ProteinModelPortal:Q81PF7 DNASU:1084540
EnsemblBacteria:EBBACT00000012257 EnsemblBacteria:EBBACT00000016137
EnsemblBacteria:EBBACT00000020689 GeneID:1084540 GeneID:2817274
GeneID:2850035 KEGG:ban:BA_2850 KEGG:bar:GBAA_2850 KEGG:bat:BAS2659
HOGENOM:HOG000185903 OMA:PIDFIEQ ProtClustDB:CLSK916832
BioCyc:BANT260799:GJAJ-2723-MONOMER
BioCyc:BANT261594:GJ7F-2816-MONOMER PANTHER:PTHR13794:SF16
Uniprot:Q81PF7
Length = 350
Score = 168 (64.2 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 67/228 (29%), Positives = 110/228 (48%)
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNI-LYPLTEIDEEISKRSTSIKICALIDSNKSPVEV 659
PS + +++A+ + H NI LY L +EI T I + +D P +
Sbjct: 97 PSAKAAVDIALYDVYCQYH-----NIPLYALLGGKKEIH---TDITLS--VDE---PFIM 143
Query: 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719
A A VE+GF +K+KV + A D E I+ +R V LR+DAN+ W +EA+
Sbjct: 144 AKEAKQHVEKGFQTLKIKVGKSAH--LDLERIEAIRNSVPKNTTLRLDANQGWNPKEAVS 201
Query: 720 F--GFLIKDCDLQYIEEPVQNEE-DIIKYCEES-GLPVALDETIDKFQKDPLNMLE-KYA 774
++ ++++IE+PV ++ D +KY ++ P+ DE+I D L +++ +Y
Sbjct: 202 IIKEMENRNLNIEFIEQPVHAKDWDGLKYVKDHVQTPIMADESIFS-ASDALKIVQGRY- 259
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ I IK G A IA A+ G +V + ES L +SA
Sbjct: 260 ---VDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSA 304
>UNIPROTKB|P29208 [details] [associations]
symbol:menC "o-succinylbenzoate synthase" species:83333
"Escherichia coli K-12" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016836 "hydro-lyase activity" evidence=IEA;IDA] [GO:0009234
"menaquinone biosynthetic process" evidence=IEA;IMP] HAMAP:MF_00470
InterPro:IPR010196 UniPathway:UPA00079 Pfam:PF01188 GO:GO:0000287
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR InterPro:IPR013342 SMART:SM00922
GO:GO:0016836 GO:GO:0009234 KO:K02549 EMBL:L07256 PIR:C64997
RefSeq:NP_416764.1 RefSeq:YP_490501.1 PDB:1FHU PDB:1FHV PDB:1R6W
PDB:2OFJ PDBsum:1FHU PDBsum:1FHV PDBsum:1R6W PDBsum:2OFJ
ProteinModelPortal:P29208 SMR:P29208 DIP:DIP-10184N IntAct:P29208
MINT:MINT-1305669 EnsemblBacteria:EBESCT00000002474
EnsemblBacteria:EBESCT00000014753 GeneID:12931509 GeneID:946734
KEGG:ecj:Y75_p2225 KEGG:eco:b2261 PATRIC:32119889 EchoBASE:EB1494
EcoGene:EG11532 eggNOG:COG1441 HOGENOM:HOG000271247 OMA:YEANRDG
ProtClustDB:PRK05105
BioCyc:EcoCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER
BioCyc:ECOL316407:JW2256-MONOMER
BioCyc:MetaCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER BRENDA:4.2.1.113
SABIO-RK:P29208 EvolutionaryTrace:P29208 Genevestigator:P29208
TIGRFAMs:TIGR01927 Uniprot:P29208
Length = 320
Score = 160 (61.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG-FLIKDC- 727
G K+KV + ++D V+ + + + + LR+DANR WT + +F ++ D
Sbjct: 126 GEKVAKVKVGLY-EAVRDGMVVNLLLEAIPD-LHLRLDANRAWTPLKGQQFAKYVNPDYR 183
Query: 728 D-LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS 786
D + ++EEP + +D + E+G+ +A DE++ ++P A G+ A+VIKP+
Sbjct: 184 DRIAFLEEPCKTRDDSRAFARETGIAIAWDESL----REP--DFAFVAEEGVRAVVIKPT 237
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830
+ G E + A G AV+S++ ES LGL+ +++L
Sbjct: 238 LTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWL 281
Score = 46 (21.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 502 LYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL 547
+YR Q+ P + + +R R+G + L E G+GE++PL
Sbjct: 6 VYRWQI--PMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPL 48
>UNIPROTKB|P65425 [details] [associations]
symbol:menC "Probable o-succinylbenzoate synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] HAMAP:MF_00470 InterPro:IPR001354 InterPro:IPR010196
UniPathway:UPA00079 Pfam:PF01188 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842573 eggNOG:COG4948 InterPro:IPR013342 PANTHER:PTHR13794
SMART:SM00922 GO:GO:0016836 GO:GO:0009234 KO:K02549 PIR:D70548
RefSeq:NP_215067.1 RefSeq:NP_334988.1 RefSeq:YP_006513886.1
ProteinModelPortal:P65425 SMR:P65425 PRIDE:P65425
EnsemblBacteria:EBMYCT00000000653 EnsemblBacteria:EBMYCT00000069772
GeneID:13318427 GeneID:887544 GeneID:924942 KEGG:mtc:MT0579
KEGG:mtu:Rv0553 KEGG:mtv:RVBD_0553 PATRIC:18122974
TubercuList:Rv0553 HOGENOM:HOG000249513 OMA:GWGEFAP
ProtClustDB:PRK02901 Uniprot:P65425
Length = 326
Score = 146 (56.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 56/190 (29%), Positives = 91/190 (47%)
Query: 650 IDSNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKD-AEVIQEVRKKVGHRIELRVD 707
I++ V A + L G K+KVA + D E + VR+ V +RVD
Sbjct: 82 INATVPAVAAAQVGEVLARFPGARTAKVKVAEPGQSLADDIERVNAVRELVPM---VRVD 138
Query: 708 ANRNWTYQEALEFGF-LIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDP 766
AN W EA+ L D L+Y+E+P ++ + +P+A DE+I K + DP
Sbjct: 139 ANGGWGVAEAVAAAAALTADGPLEYLEQPCATVAELAELRRRVDVPIAADESIRKAE-DP 197
Query: 767 LNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIF 826
L ++ A +A V+K + +GG + A R VVS+A +S +G++A +
Sbjct: 198 LAVVR--AQAADIA-VLKVAPLGGIS---ALLDIAARIAVPVVVSSALDSAVGIAAGLTA 251
Query: 827 SSYL-ELQNA 835
++ L EL +A
Sbjct: 252 AAALPELDHA 261
>UNIPROTKB|Q71WQ8 [details] [associations]
symbol:LMOf2365_2493 "N-acylamino acid racemase"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] [GO:0016855 "racemase
and epimerase activity, acting on amino acids and derivatives"
evidence=ISS] InterPro:IPR001354 Pfam:PF02746 eggNOG:COG4948
GO:GO:0016855 InterPro:IPR013342 InterPro:IPR013341
PANTHER:PTHR13794 SMART:SM00922 EMBL:AE017262
GenomeReviews:AE017262_GR HOGENOM:HOG000185900 KO:K02549
OMA:DDIVDHR InterPro:IPR010197 PANTHER:PTHR13794:SF8
TIGRFAMs:TIGR01928 RefSeq:YP_015081.1 ProteinModelPortal:Q71WQ8
SMR:Q71WQ8 STRING:Q71WQ8 GeneID:2797181 KEGG:lmf:LMOf2365_2493
PATRIC:20326355 ProtClustDB:CLSK564982 Uniprot:Q71WQ8
Length = 374
Score = 131 (51.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 52/203 (25%), Positives = 94/203 (46%)
Query: 637 ISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRK 696
I + SI + I S + + + ++EG+ +KLK+A P KD + ++ VR+
Sbjct: 124 IGAKKDSIAVGVSIGVQHSAEALVQLVSQYMDEGYERVKLKIA----PKKDIQFVKAVRE 179
Query: 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCD---LQYIEEPVQNEEDIIKYC---EESG 750
K + + L DAN + ++ L L+K+ D L+ IE+P +D +++ ++
Sbjct: 180 KFPN-LSLMADANSAYNREDFL----LLKELDHFNLEMIEQPF-GTKDFVEHAWLQKKLK 233
Query: 751 LPVALDETIDKFQKDPLNMLEKYAHP--GIVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808
+ LDE I D L K AH A+ +K + +GG A IAR+ + +
Sbjct: 234 TRICLDENIRSL--DDL----KQAHMLGSCQAVNLKLARVGGMSEALKIARYCSDNNLLV 287
Query: 809 VVSAAFESGLGLSAYIIFSSYLE 831
E+G+G + I ++ E
Sbjct: 288 WCGGMLEAGIGRAHNIALAARAE 310
Score = 57 (25.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 505 IQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVA--PLEIHKENLL 555
+ L AP +SY + N F +I+ L E+G GYGE+ PL + E L
Sbjct: 13 LPLIAPFKTSYGELNSKDF----YIIELVNEEGIRGYGELEAFPLPDYTEETL 61
>TIGR_CMR|BA_0339 [details] [associations]
symbol:BA_0339 "mandelate racemase/muconate lactonizing
enzyme family protein" species:198094 "Bacillus anthracis str.
Ames" [GO:0008152 "metabolic process" evidence=ISS] [GO:0018838
"mandelate racemase activity" evidence=ISS] InterPro:IPR001354
Pfam:PF02746 GO:GO:0003824 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR OMA:AHGLEVM InterPro:IPR013342
InterPro:IPR013341 PANTHER:PTHR13794 SMART:SM00922 HSSP:O34508
HOGENOM:HOG000185903 RefSeq:NP_842886.1 RefSeq:YP_016955.1
RefSeq:YP_026604.1 ProteinModelPortal:Q81ZD0 SMR:Q81ZD0
DNASU:1083897 EnsemblBacteria:EBBACT00000011881
EnsemblBacteria:EBBACT00000016693 EnsemblBacteria:EBBACT00000023508
GeneID:1083897 GeneID:2818610 GeneID:2849319 KEGG:ban:BA_0339
KEGG:bar:GBAA_0339 KEGG:bat:BAS0324 ProtClustDB:CLSK915784
BioCyc:BANT260799:GJAJ-366-MONOMER
BioCyc:BANT261594:GJ7F-376-MONOMER Uniprot:Q81ZD0
Length = 369
Score = 137 (53.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 46/177 (25%), Positives = 88/177 (49%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P E+A A +++++G+ + K+KV +D + I+ VR++VG+ I +RVD N+ W
Sbjct: 142 PEEMAEEAASMIQKGYQSFKMKVGTNVK--EDVKRIEAVRERVGNDIAIRVDVNQGWKNS 199
Query: 716 EALEFGFL-IKDCDLQYIEEPVQNEE-DIIKYCE-ESGLPVALDETIDKFQKDPLNMLEK 772
+ ++ +IE+PV ++ D + + ++ LP+ +DE + K ++ ++
Sbjct: 200 ANTLMALRSLGHLNIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGL-KGSREMRQIINL 258
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA--YIIFS 827
A + IK GG A +A A+ G V + ES + SA ++ FS
Sbjct: 259 DAAD---KVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFS 312
Score = 50 (22.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 35/152 (23%), Positives = 63/152 (41%)
Query: 502 LYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGE-VAPLEIHKENLLDAEEQ 560
LY I+L P ++ S I+ + ++G +GYGE VA + E+ E
Sbjct: 8 LYAIRL--PLRDPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESW---EST 62
Query: 561 LRFLLHFMTGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRC----G--LEMAILN 613
L H + A I P+ + +T+ G+P + + C G L +
Sbjct: 63 FHILKHTLAPALIGQN-PMNIEKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQ 121
Query: 614 AIAVKHGSSFLNILYPLTEID-EEISKRSTSI 644
I ++ F I + L+ D EE+++ + S+
Sbjct: 122 LIGGRYHEEF-PITHVLSIADPEEMAEEAASM 152
>UNIPROTKB|P27099 [details] [associations]
symbol:tcbD "Chloromuconate cycloisomerase" species:65067
"Pseudomonas sp. P51" [GO:0018850 "chloromuconate cycloisomerase
activity" evidence=NAS] [GO:0046300 "2,4-dichlorophenoxyacetic acid
catabolic process" evidence=NAS] UniPathway:UPA00083
InterPro:IPR001354 InterPro:IPR013370 InterPro:IPR018110
PROSITE:PS00908 PROSITE:PS00909 Pfam:PF02746 GO:GO:0030145
GO:GO:0009063 InterPro:IPR013342 InterPro:IPR013341
PANTHER:PTHR13794 SMART:SM00922 EMBL:M57629 PIR:B43673 PDB:1NU5
PDBsum:1NU5 ProteinModelPortal:P27099 SMR:P27099
BioCyc:MetaCyc:MONOMER-14405 EvolutionaryTrace:P27099 GO:GO:0018850
GO:GO:0018849 GO:GO:0046300 PANTHER:PTHR13794:SF12
TIGRFAMs:TIGR02534 Uniprot:P27099
Length = 370
Score = 138 (53.6 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 47/203 (23%), Positives = 94/203 (46%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
TSI I + S + ++ S + K+K+ R P +D E I+ + K VG R
Sbjct: 130 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGART-PAQDLEHIRSIVKAVGDR 188
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETI 759
+RVD N+ W Q A + +++ ++ +E+PV N + + E++G+ + DE++
Sbjct: 189 ASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESL 248
Query: 760 DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLG 819
+ +A + A +K +GG N +A A+ G + +S +G
Sbjct: 249 SSLSS-AFELARDHA---VDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVG 304
Query: 820 LSAYI-IFSSYLELQNAYLCKVM 841
+A + ++++ L Y C+++
Sbjct: 305 TAAALHVYATLPSLP--YGCELI 325
>UNIPROTKB|Q81K98 [details] [associations]
symbol:BAS4746 "N-acylamino acid racemase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001354 Pfam:PF02746 GO:GO:0003824 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
InterPro:IPR013342 InterPro:IPR013341 PANTHER:PTHR13794
SMART:SM00922 HOGENOM:HOG000185900 KO:K02549 InterPro:IPR010197
PANTHER:PTHR13794:SF8 TIGRFAMs:TIGR01928 RefSeq:NP_847293.1
RefSeq:YP_021758.2 RefSeq:YP_030990.1 ProteinModelPortal:Q81K98
DNASU:1084411 EnsemblBacteria:EBBACT00000012550
EnsemblBacteria:EBBACT00000018562 EnsemblBacteria:EBBACT00000023309
GeneID:1084411 GeneID:2817015 GeneID:2851461 KEGG:ban:BA_5107
KEGG:bar:GBAA_5107 KEGG:bat:BAS4746 OMA:HEFEMAV
ProtClustDB:CLSK918260 BioCyc:BANT260799:GJAJ-4800-MONOMER
BioCyc:BANT261594:GJ7F-4959-MONOMER Uniprot:Q81K98
Length = 368
Score = 120 (47.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 48/190 (25%), Positives = 83/190 (43%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
+ I++ +I N PV + I EEG+ K+K+ P D E+++E+RK+ H
Sbjct: 129 SEIEVGVVIGINTIPVMLKQIEK-YAEEGYERFKVKIK----PGHDYELLKEIRKEFPH- 182
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETI 759
I L DAN +T + L + L IE+P+ + + D + ++ P+ LDE+I
Sbjct: 183 IPLMADANSAYTLADTESLKRL-DEFQLMMIEQPLADYDFLDHAQLQKKIETPICLDESI 241
Query: 760 DKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ + + G IV IKP +GG + I + H E G+
Sbjct: 242 HSLEDARVAITL-----GSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPVWCGGMVEMGI 296
Query: 819 GLSAYIIFSS 828
+ + +S
Sbjct: 297 SRAQNVALAS 306
Score = 61 (26.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 507 LCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR- 562
L P +SY + + RE ++ L EDG +G+GEV +E + A L+
Sbjct: 15 LVIPFAASYGTYEK----RESIVIELEDEDGYIGFGEVVAFSEPWYTEETVKTALHVLQD 70
Query: 563 FLLHFMTGAKISY 575
FLL + A+IS+
Sbjct: 71 FLLPDLLKAEISH 83
>TIGR_CMR|BA_5107 [details] [associations]
symbol:BA_5107 "N-acylamino acid racemase" species:198094
"Bacillus anthracis str. Ames" [GO:0008150 "biological_process"
evidence=ND] [GO:0016855 "racemase and epimerase activity, acting
on amino acids and derivatives" evidence=ISS] InterPro:IPR001354
Pfam:PF02746 GO:GO:0003824 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR InterPro:IPR013342 InterPro:IPR013341
PANTHER:PTHR13794 SMART:SM00922 HOGENOM:HOG000185900 KO:K02549
InterPro:IPR010197 PANTHER:PTHR13794:SF8 TIGRFAMs:TIGR01928
RefSeq:NP_847293.1 RefSeq:YP_021758.2 RefSeq:YP_030990.1
ProteinModelPortal:Q81K98 DNASU:1084411
EnsemblBacteria:EBBACT00000012550 EnsemblBacteria:EBBACT00000018562
EnsemblBacteria:EBBACT00000023309 GeneID:1084411 GeneID:2817015
GeneID:2851461 KEGG:ban:BA_5107 KEGG:bar:GBAA_5107 KEGG:bat:BAS4746
OMA:HEFEMAV ProtClustDB:CLSK918260
BioCyc:BANT260799:GJAJ-4800-MONOMER
BioCyc:BANT261594:GJ7F-4959-MONOMER Uniprot:Q81K98
Length = 368
Score = 120 (47.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 48/190 (25%), Positives = 83/190 (43%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
+ I++ +I N PV + I EEG+ K+K+ P D E+++E+RK+ H
Sbjct: 129 SEIEVGVVIGINTIPVMLKQIEK-YAEEGYERFKVKIK----PGHDYELLKEIRKEFPH- 182
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETI 759
I L DAN +T + L + L IE+P+ + + D + ++ P+ LDE+I
Sbjct: 183 IPLMADANSAYTLADTESLKRL-DEFQLMMIEQPLADYDFLDHAQLQKKIETPICLDESI 241
Query: 760 DKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ + + G IV IKP +GG + I + H E G+
Sbjct: 242 HSLEDARVAITL-----GSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPVWCGGMVEMGI 296
Query: 819 GLSAYIIFSS 828
+ + +S
Sbjct: 297 SRAQNVALAS 306
Score = 61 (26.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 507 LCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR- 562
L P +SY + + RE ++ L EDG +G+GEV +E + A L+
Sbjct: 15 LVIPFAASYGTYEK----RESIVIELEDEDGYIGFGEVVAFSEPWYTEETVKTALHVLQD 70
Query: 563 FLLHFMTGAKISY 575
FLL + A+IS+
Sbjct: 71 FLLPDLLKAEISH 83
>UNIPROTKB|Q881I2 [details] [associations]
symbol:PSPTO_2911 "Mandelate racemase/muconate lactonizing
enzyme family protein" species:223283 "Pseudomonas syringae pv.
tomato str. DC3000" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001354 Pfam:PF01188 Pfam:PF02746 GO:GO:0003824
GO:GO:0046872 eggNOG:COG4948 InterPro:IPR013342 InterPro:IPR013341
PANTHER:PTHR13794 SMART:SM00922 EMBL:AE016853
GenomeReviews:AE016853_GR KO:K01706 HOGENOM:HOG000238022
RefSeq:NP_792709.1 HSSP:P76637 ProteinModelPortal:Q881I2
GeneID:1184565 KEGG:pst:PSPTO_2911 PATRIC:19997175 OMA:THYPWQE
ProtClustDB:CLSK902372 BioCyc:PSYR223283:GJIX-2956-MONOMER
Uniprot:Q881I2
Length = 424
Score = 135 (52.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 47/184 (25%), Positives = 83/184 (45%)
Query: 658 EVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQ 715
++ + A ++E GF +IKLK A DP + I+ ++K G+ LR+D N NW+ +
Sbjct: 173 QIVAQARRMIEAYGFKSIKLK-AGALDPEHEVSCIKALKKAFPGY--PLRIDPNGNWSLE 229
Query: 716 EALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775
++ L+ D DLQY E+P + + + + +GLP+A + + F + A
Sbjct: 230 TSIRMAQLLGD-DLQYYEDPTPGLDGMSELHKRTGLPLATNMVVTDFDE----FRRSVAL 284
Query: 776 PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNA 835
+ ++ GG + +A+ G VS S LG+S + + N
Sbjct: 285 NSVQIVLADHHYWGGLRDTQALAKMCDTFG--LGVSMHSNSHLGISLMAMAHVAASVPNL 342
Query: 836 -YLC 838
Y C
Sbjct: 343 DYAC 346
>TIGR_CMR|SPO_1595 [details] [associations]
symbol:SPO_1595 "mandelate racemase/muconate lactonizing
enzyme" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0016853
"isomerase activity" evidence=ISS] [GO:0019439 "aromatic compound
catabolic process" evidence=ISS] InterPro:IPR001354
InterPro:IPR018110 PROSITE:PS00908 Pfam:PF01188 Pfam:PF02746
GO:GO:0003824 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0009063
InterPro:IPR013342 InterPro:IPR013341 PANTHER:PTHR13794
SMART:SM00922 RefSeq:YP_166836.1 ProteinModelPortal:Q5LT19
DNASU:3192788 GeneID:3192788 KEGG:sil:SPO1595 PATRIC:23376513
HOGENOM:HOG000140215 OMA:PLHLENG ProtClustDB:CLSK544228
Uniprot:Q5LT19
Length = 367
Score = 118 (46.6 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 41/138 (29%), Positives = 66/138 (47%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P ++A IA +G T ++K+ D D E + +VR+ VG + D N T
Sbjct: 141 APDDMARIAREAQAQGITQFQVKLGASGDWQTDVERLAKVREAVGPGPLVYGDWNCGATS 200
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
EA+ G + D+ +E+P ED + +GLP+ +DE D ++L A
Sbjct: 201 LEAIRVGRAVAQLDIM-LEQPCATLEDCARVQRATGLPMKIDE----LAHDTASLLT--A 253
Query: 775 HP-GIV-AIVIKPSVIGG 790
H GI+ A+ +K S GG
Sbjct: 254 HRLGIMDAVALKLSKFGG 271
Score = 53 (23.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL 547
KI R+ +L+ + L + T+ Y+ ++ E ++++ + G G+GEV P+
Sbjct: 2 KIARL--NLWHVPLTSH-TAYYMADGKTCDTVETVVIAVQTDTGITGWGEVCPI 52
>TIGR_CMR|SPO_A0378 [details] [associations]
symbol:SPO_A0378 "mandelate racemase/muconate lactonizing
enzyme family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0016853 "isomerase activity" evidence=ISS] [GO:0019439
"aromatic compound catabolic process" evidence=ISS]
InterPro:IPR001354 Pfam:PF01188 Pfam:PF02746 GO:GO:0003824
GO:GO:0046872 InterPro:IPR013342 InterPro:IPR013341
PANTHER:PTHR13794 SMART:SM00922 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165205.1
ProteinModelPortal:Q5LKK3 GeneID:3196713 KEGG:sil:SPOA0378
PATRIC:23382106 HOGENOM:HOG000230168 OMA:GANIMRA
ProtClustDB:CLSK935243 Uniprot:Q5LKK3
Length = 367
Score = 121 (47.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 57/223 (25%), Positives = 96/223 (43%)
Query: 658 EVASIATTLVEEGFTAIKLK----VARRAD--PIKDAEVIQEVRKKVGHRIELRVDANRN 711
E A + E+GF A K + V R D P + E++ +R+ +G + L VDAN
Sbjct: 128 EAARLVRLRDEQGFDAFKFRIGAEVGRDRDEWPGRTEEIVPTMRRAMGDDVALLVDANSC 187
Query: 712 WTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771
++ A+E G +++ + + EEP E + + + LD I ++D L
Sbjct: 188 YSPARAIEVGRMLEQHGISHYEEPCPYWE----FAQTKEVTDTLDLDITGGEQDCLMERW 243
Query: 772 KYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSY 829
+ V V++P + +GG +AR A+ G AA LS +F+ +
Sbjct: 244 QTMIADRVVDVLQPDICYLGGLSRTLRVARMAEAAGMPITPHAA-----NLSMVTLFTMH 298
Query: 830 L--ELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
L + NA K + + +GL Y W + T+DP I
Sbjct: 299 LLRAIPNAG--KYLEFSI-----EGLDYYPWQQGLFTSDPYRI 334
Score = 47 (21.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 535 EDGSVGYGEVAP 546
EDG+ G+G+VAP
Sbjct: 22 EDGAQGWGQVAP 33
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 983 983 0.00098 122 3 11 22 0.49 33
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 636 (68 KB)
Total size of DFA: 507 KB (2233 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 89.13u 0.11s 89.24t Elapsed: 00:00:06
Total cpu time: 89.14u 0.11s 89.25t Elapsed: 00:00:06
Start: Thu May 9 22:07:59 2013 End: Thu May 9 22:08:05 2013