BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041113
(983 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LQ1|A Chain A, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
pdb|3LQ1|B Chain B, Crystal Structure Of
2-Succinyl-6-Hydroxy-2,4-Cyclohexadiene 1-Carboxylic
Acid Synthase2-Oxoglutarate Decarboxylase From Listeria
Monocytogenes Str. 4b F2365
Length = 578
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 227/471 (48%), Gaps = 74/471 (15%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
AV A +P GPVH+N P REPL + I S PFT + +H H
Sbjct: 159 AVDIAMKTPRGPVHLNFPLREPL--------------VPILEPS--PFTATGK-KHHHVH 201
Query: 69 KSYTYCQMAEVLE--LVQGV------NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
YT+ EVL+ +Q + KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 202 IYYTH----EVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 257
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR L + + +D D L + D + +V+I+ GS SK + +
Sbjct: 258 LSGLRSYGAL--------DEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWL 309
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRS------SKWCSF 234
E+ + +VD DP +VT I +F+ +++ +P + + W S+
Sbjct: 310 EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCD-ERFLLDIMQQNMPDDAKDAAWLNGWTSY 368
Query: 235 LRALDMMVASEISFQICADYS-LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
+ VA EI A+ + L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 369 NK-----VAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI 423
Query: 294 TTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFL 353
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF
Sbjct: 424 D-----------------KKIKMLANRGANGIDGVVSSALGASV-VFQPMFLLIGDLSFY 465
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413
HD NGL + K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + +
Sbjct: 466 HDMNGLLMAKKY--KMNLTIVIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFA 521
Query: 414 CLAHGLNHVQVKTKVELEEALS-MSQHLGTDRVIEVESCIDANATFHSMLR 463
+ ++ + K+ ELEEA+ S H G D +IEV++ N H L
Sbjct: 522 AAFYDADYHEAKSVDELEEAIDKASYHKGLD-IIEVKTNRHENKANHQALE 571
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 201/450 (44%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 164 GGVHINCPFAEPLYGEXDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 221
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G E+ L A+ + WP++ D+LS +T Q
Sbjct: 222 --------KRGVVVAGRXSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 260
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 261 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 317
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 318 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAXQAV---IARRDAFG 370
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH + L LFVGNS+ +R +D + L + +P V
Sbjct: 371 EAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 412
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 413 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 470
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE A + +
Sbjct: 471 NNGGQIFSLLPTPQSERER----FYLXPQNVHFEHAAAXFELKYHRPQNWQELETAFADA 526
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 527 WRTPTTTVIEXVVNDTDGAQTLQQLLAQVS 556
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 202/450 (44%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH + L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE A + +
Sbjct: 469 NNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 202/450 (44%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 183 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 240
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 241 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 279
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 280 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 336
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 337 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 389
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH + L LFVGNS+ +R +D + L + +P V
Sbjct: 390 EAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 431
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 432 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 489
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE A + +
Sbjct: 490 NNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADA 545
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 546 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 575
>pdb|2X7J|A Chain A, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|B Chain B, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|C Chain C, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
pdb|2X7J|D Chain D, Structure Of The Menaquinone Biosynthesis Protein Mend
From Bacillus Subtilis
Length = 604
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/480 (25%), Positives = 216/480 (45%), Gaps = 67/480 (13%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
I T A A P GPVH+N P REPL + S EPF +
Sbjct: 172 IRTLASRAAGEAQKRPMGPVHVNVPLREPL----------------MPDLSDEPFGRMRT 215
Query: 62 VQH---SHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVA 118
+H +S +++V E++ KG+++ G +H++ + ++ L++ +++P++A
Sbjct: 216 GRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILA 275
Query: 119 DILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQ 178
D LS LR + + + ++ D D L + +K ++ DV+I+ G SK +
Sbjct: 276 DPLSNLR------NGVHDKSTVI--DAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFL 327
Query: 179 MIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLK-VQVPHRSSKWCS---- 233
+++ I++D DP+ + H I F + ++ + RSS+W
Sbjct: 328 WLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQF 387
Query: 234 ----FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMY 289
F L + + ++SF E ++ L + NS+LFVGNSM IRD+D +
Sbjct: 388 VNGRFREHLQTISSEDVSF---------EGNLYRILQHLVPENSSLFVGNSMPIRDVDTF 438
Query: 290 GRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGD 349
E + R+ NRGA+GIDG++S+A+G G V V+GD
Sbjct: 439 -----------------FEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGD 481
Query: 350 ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNIS 409
+SF HD NGL L + P+ ++++NN GG IFS LP A +E + F T +
Sbjct: 482 LSFYHDLNGL--LAAKKLGIPLTVILVNNDGGGIFSFLPQA--SEKTHFEDLFGTPTGLD 537
Query: 410 IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH-SMLRKFARQ 468
++ +G + + E + A + +IE+++ + H ML + R+
Sbjct: 538 FKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 36/341 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI R+E S ++ P T + R+ + E I+ + + G+VG+GE P + +
Sbjct: 2 KIIRIETS----RIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGD 57
Query: 554 LLDAEEQL--RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAI 611
+D+ E L + G ++ + +L + + S + +EMA+
Sbjct: 58 SMDSIESAIHHVLKPALLGKSLAGYEAILH-DIQHLLTGNM---------SAKAAVEMAL 107
Query: 612 LNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGF 671
+ A G +L + E + + S+ SP E+A+ A +++GF
Sbjct: 108 YDGWAQMCGLPLYQMLGGYRDTLE--TDYTVSVN---------SPEEMAADAENYLKQGF 156
Query: 672 TAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL-- 729
+K+KV + D D IQE+RK+VG ++LR+DAN+ W +EA+ ++D L
Sbjct: 157 QTLKIKVGKD-DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI 215
Query: 730 QYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV 787
+ +E+PV ++ + K + + P+ DE++ F P E I IK
Sbjct: 216 ELVEQPVHKDDLAGLKKVTDATDTPIMADESV--FT--PRQAFEVLQTRSADLINIKLMK 271
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
GG A I A+ G +V + E+ LG++A F++
Sbjct: 272 AGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAA 312
>pdb|2PGE|A Chain A, Crystal Structure Of Menc From Desulfotalea Psychrophila
Lsv54
Length = 377
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 56/344 (16%)
Query: 536 DGSVGYGEVAPL---------EIHKE-----NLLDAEE--QLRFLLHFMTGAKISYFLPL 579
DG G GEV+ + +I +E L AEE +LR L GA S + +
Sbjct: 40 DGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSV 99
Query: 580 L---KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEE 636
L G SW ST G FP++R LEMA+L+ ++ F + +
Sbjct: 100 LTDIAGILDSWQVSTDGR-----FPALRFALEMALLDLLSGGRQEWFAS----------D 144
Query: 637 ISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRK 696
++ I + LI ++ I L E G+ +KLK+ D K+ ++ +R+
Sbjct: 145 FTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAE-GYGCLKLKIGA-IDFDKECALLAGIRE 202
Query: 697 KVG-HRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPV 753
++E+RVDAN ++ A + + L IE+P++ + ++ C S L +
Sbjct: 203 SFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHLHSIEQPIRQHQWSEMAALCANSPLAI 262
Query: 754 ALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA 813
ALDE + + + + P I++KPS++GGF AG A+ G +++A
Sbjct: 263 ALDEELIGLGAEQRSAMLDAIRPQY--IILKPSLLGGFHYAGQWIELARERGIGFWITSA 320
Query: 814 FESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQ 857
ES LGL+A +++ + P + QGLGT Q
Sbjct: 321 LESNLGLAAIAQWTALYQ---------------PTMPQGLGTGQ 349
>pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase
pdb|2QVH|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
pdb|2QVH|B Chain B, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
Length = 327
Score = 66.2 bits (160), Expect = 9e-11, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADP-IKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P E A I + G T K+KVA R D ++ VR +G R +R+D N W
Sbjct: 81 PEEAARIVAS---SGCTTAKVKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDV 137
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
A+ L+ +L+Y+E+P +++ + +P+A DE+I + +DPL + + A
Sbjct: 138 DTAVRXIRLLDRFELEYVEQPCATVDELAEVRRRVSVPIAADESIRR-AEDPLRVRDAEA 196
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQN 834
+V + ++P +GG A R A+ G VVS+A E+ +GL+A
Sbjct: 197 -ADVVVLKVQP--LGGVRAA---LRLAEECGLPVVVSSAVETSVGLAA------------ 238
Query: 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH 872
EL P A GL T + L DV DP+ H
Sbjct: 239 GVALAAALPEL--PYACGLATLRLLHADVCDDPLLPVH 274
>pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJB|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJC|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJD|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
Length = 368
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 63/352 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGE----VAPLEI 549
K+ +E ++ L AP +S+ ++ RE +L G G+GE PL
Sbjct: 2 KLSGVELRRVQMPLVAPFRTSF----GTQSVRELLLLRAVTPAGE-GWGECVTMAGPLYS 56
Query: 550 HKENLLDAEEQLRFLL-------HFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPS 602
+ N AE LR L +T AK++ L KG +
Sbjct: 57 SEYND-GAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMA---------------- 99
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+ LEMA+L+A H SF E+ S+ + + ++ +
Sbjct: 100 -KGALEMAVLDAELRAHERSFAA----------ELGSVRDSVPCGVSVGIMDTIPQLLDV 148
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
++EG+ IKLK+ +P D E ++ VR++ G + L+VDAN +T +A +
Sbjct: 149 VGGYLDEGYVRIKLKI----EPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 204
Query: 723 LIKDCDLQYIEEPVQNEEDIIKYCEES---GLPVALDETI--DKFQKDPLNMLEKYAHPG 777
L L IE+P++ EED++ + E + P+ LDE+I + D + + G
Sbjct: 205 L-DPFGLLLIEQPLE-EEDVLGHAELARRIQTPICLDESIVSARAAADAIKL-------G 255
Query: 778 IVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
V IV IKP +GG+ A + HG E+GLG +A + +S
Sbjct: 256 AVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALAS 307
>pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|B Chain B, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|C Chain C, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|D Chain D, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
Length = 368
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 148/352 (42%), Gaps = 63/352 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGE----VAPLEI 549
K+ +E ++ L AP +S+ ++ RE +L G G+GE PL
Sbjct: 2 KLSGVELRRVQMPLVAPFRTSF----GTQSVRELLLLRAVTPAGE-GWGECVTMAGPLYS 56
Query: 550 HKENLLDAEEQLRFLL-------HFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPS 602
+ N AE LR L +T AK++ L KG +
Sbjct: 57 SEYND-GAEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMA---------------- 99
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+ LEMA+L+A H SF E+ S+ + + ++ +
Sbjct: 100 -KGALEMAVLDAELRAHERSFAA----------ELGSVRDSVPCGVSVGIMDTIPQLLDV 148
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
++EG+ IKLK+ +P D E ++ VR++ G + L+VDAN +T +A +
Sbjct: 149 VGGYLDEGYVRIKLKI----EPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR 204
Query: 723 LIKDCDLQYIEEPVQNEEDIIKYCEES---GLPVALDETI--DKFQKDPLNMLEKYAHPG 777
L L IE+P++ EED++ + E + P+ LDE+I + D + + G
Sbjct: 205 L-DPFGLLLIEQPLE-EEDVLGHAELARRIQTPICLDESIVSARAAADAIKL-------G 255
Query: 778 IVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
V IV IKP +GG+ A + HG E+GLG +A + +S
Sbjct: 256 AVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGDMIETGLGRAANVALAS 307
>pdb|1R6W|A Chain A, Crystal Structure Of The K133r Mutant Of
O-Succinylbenzoate Synthase (Osbs) From Escherichia
Coli. Complex With Shchc
Length = 322
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 702 IELRVDANRNWTYQEALEFGFLI----KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDE 757
+ LR+DANR WT + +F + +D + ++EEP + +D + E+G+ +A DE
Sbjct: 158 LHLRLDANRAWTPLKGQQFAKYVNPDYRD-RIAFLEEPCKTRDDSRAFARETGIAIAWDE 216
Query: 758 TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESG 817
++ ++P A G+ A+VIKP++ G E + A G AV+S++ ES
Sbjct: 217 SL----REP--DFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESS 270
Query: 818 LGLSAYIIFSSYL 830
LGL+ +++L
Sbjct: 271 LGLTQLARIAAWL 283
>pdb|1FHV|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase
From E. Coli Complexed With Mg And Osb
Length = 323
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 702 IELRVDANRNWTYQEALEFGFLI----KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDE 757
+ LR+DANR WT + +F + +D + ++EEP + +D + E+G+ +A DE
Sbjct: 159 LHLRLDANRAWTPLKGQQFAKYVNPDYRD-RIAFLEEPCKTRDDSRAFARETGIAIAWDE 217
Query: 758 TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESG 817
++ ++P A G+ A+VIKP++ G E + A G AV+S++ ES
Sbjct: 218 SL----REP--DFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESS 271
Query: 818 LGLSAYIIFSSYL 830
LGL+ +++L
Sbjct: 272 LGLTQLARIAAWL 284
>pdb|1FHU|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate Synthase
From E. Coli
Length = 320
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 702 IELRVDANRNWTYQEALEFGFLI----KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDE 757
+ LR+DANR WT + +F + +D + ++EEP + +D + E+G+ +A DE
Sbjct: 156 LHLRLDANRAWTPLKGQQFAKYVNPDYRD-RIAFLEEPCKTRDDSRAFARETGIAIAWDE 214
Query: 758 TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESG 817
++ ++P A G+ A+VIKP++ G E + A G AV+S++ ES
Sbjct: 215 SL----REP--DFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESS 268
Query: 818 LGLSAYIIFSSYL 830
LGL+ +++L
Sbjct: 269 LGLTQLARIAAWL 281
>pdb|3GC2|A Chain A, 1.85 Angstrom Crystal Structure Of O-Succinylbenzoate
Synthase From Salmonella Typhimurium In Complex With
Succinic Acid
Length = 323
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 10/151 (6%)
Query: 683 DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYIEEPVQNE 739
+ ++D V+ + + + + LR+DANR WT +A +F + + ++EEP +
Sbjct: 141 EAVRDGXVVNLLLEAIPD-LHLRLDANRAWTPLKAQQFAKYVNPDYRARIAFLEEPCKTR 199
Query: 740 EDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIAR 799
+D + E+G+ +A DE++ + A G+ A+VIKP++ G +
Sbjct: 200 DDSRAFARETGIAIAWDESLREAD------FTFEAEEGVRAVVIKPTLTGSLDKVREQVA 253
Query: 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830
A G AV+S++ ES LGL+ +++L
Sbjct: 254 AAHALGLTAVISSSIESSLGLTQLARIAAWL 284
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 41/306 (13%)
Query: 530 LSLYLEDGSVGYGEVAP-LEIHKEN---LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFS 585
+ + LE G GYGE +P ++ E LL E +R +TG + + + + +
Sbjct: 35 VEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVR---EMITGIDVRNYARIFE--IT 89
Query: 586 SWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIK 645
++ FPS++ ++ A L+A++ + G+ + Y L +EI T
Sbjct: 90 DRLFG---------FPSLKAAVQFATLDALSQELGT---QVCYLLGGKRDEIETDKT--- 134
Query: 646 ICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
ID+ ++ V+ A + EEGF IK+KV +D E ++E+ KV +
Sbjct: 135 --VGIDTVENRVKEAK---KIFEEGFRVIKIKVGENLK--EDIEAVEEI-AKVTRGAKYI 186
Query: 706 VDANRNWTYQEALEFGFLI--KDCDLQYIEEPVQNEE-DIIKYCE-ESGLPVALDETIDK 761
VDAN +T +EA+EF + K D+ E+PV+ E+ + +K+ S PVA DE+ +
Sbjct: 187 VDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESA-R 245
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ D + ++++ A + ++K G +A I A+ G ++ ES LG++
Sbjct: 246 TKFDVMRLVKEEAVDYVNIKLMKS----GISDALAIVEIAESSGLKLMIGCMGESSLGIN 301
Query: 822 AYIIFS 827
+ F+
Sbjct: 302 QSVHFA 307
>pdb|2OFJ|A Chain A, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|B Chain B, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|C Chain C, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|D Chain D, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
Length = 323
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 702 IELRVDANRNWTYQEALEFGFLI----KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDE 757
+ LR+DANR WT + +F + +D + ++ EP + +D + E+G+ +A DE
Sbjct: 159 LHLRLDANRAWTPLKGQQFAKYVNPDYRD-RIAFLAEPCKTRDDSRAFARETGIAIAWDE 217
Query: 758 TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESG 817
++ ++P A G+ A+VIKP++ G E + A G AV+S++ ES
Sbjct: 218 SL----REP--DFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESS 271
Query: 818 LGLSAYIIFSSYL 830
LGL+ +++L
Sbjct: 272 LGLTQLARIAAWL 284
>pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q4D|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
Length = 368
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 35/300 (11%)
Query: 529 ILSLYLEDGSVGYGEVAP-LEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSW 587
I+ ++ G +GYGE +P + IH E++ A F+ G Y L G+
Sbjct: 33 IVRIHTASGHIGYGECSPFMTIHGESMDTA---------FIVG---QYLAKGLIGTSCLD 80
Query: 588 IWSTLGIPACEIFPS--VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIK 645
I S + I+ + ++ +A+ + +A +H L + L ++I + ++
Sbjct: 81 IVSNSLLMDAIIYGNSCIKSAFNIALYD-LAAQHAG--LPLYAFLGGKKDKIIQTDYTVS 137
Query: 646 ICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
I P ++A+ A + + GF IK+KV + D E I+ +R+ G I LR
Sbjct: 138 I-------DEPHKMAADAVQIKKNGFEIIKVKVGGSKE--LDVERIRMIREAAGDSITLR 188
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE--EDIIKYCEESGLPVALDET-IDKF 762
+DAN+ W+ + A+E L++ ++Q+ EEPV + K + +P+ DE+ + F
Sbjct: 189 IDANQGWSVETAIETLTLLEPYNIQHCEEPVSRNLYTALPKIRQACRIPIMADESCCNSF 248
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ L ++ + +K S G NA I R A++ V ES LG +A
Sbjct: 249 DAERLIQIQ-----ACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTA 303
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 139/306 (45%), Gaps = 41/306 (13%)
Query: 530 LSLYLEDGSVGYGEVAP-LEIHKEN---LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFS 585
+ + LE G GYGE +P ++ E LL E +R +TG + + + + +
Sbjct: 35 VEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVR---EXITGIDVRNYARIFE--IT 89
Query: 586 SWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIK 645
++ FPS++ ++ A L+A++ + G+ + Y L +EI T
Sbjct: 90 DRLFG---------FPSLKAAVQFATLDALSQELGT---QVCYLLGGKRDEIETDKT--- 134
Query: 646 ICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
ID+ ++ V+ A + EEGF IK+KV +D E ++E+ KV +
Sbjct: 135 --VGIDTVENRVKEAK---KIFEEGFRVIKIKVGENLK--EDIEAVEEI-AKVTRGAKYI 186
Query: 706 VDANRNWTYQEALEFGFLI--KDCDLQYIEEPVQNEE-DIIKYCE-ESGLPVALDETIDK 761
VDAN +T +EA+EF + K D+ E+PV+ E+ + +K+ S PVA DE+
Sbjct: 187 VDANXGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESAR- 245
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
K + L K V I + S G +A I A+ G + ES LG++
Sbjct: 246 -TKFDVXRLVKEEAVDYVNIKLXKS---GISDALAIVEIAESSGLKLXIGCXGESSLGIN 301
Query: 822 AYIIFS 827
+ F+
Sbjct: 302 QSVHFA 307
>pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis
pdb|3DG6|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
Length = 367
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
P+ + ++MA+ +A+ G S + E + + +++ ++ + PV++
Sbjct: 96 PTAKAAIDMAMWDAL----GQSLR------LSVSEMLGGYTDRMRVSHMLGFD-DPVKMV 144
Query: 661 SIATTLVEE-GFTAIKLKVARRADPIK-DAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+ A + E G K+KV RR P++ D V++ +R++ G IEL VD NR W+ E+L
Sbjct: 145 AEAERIRETYGINTFKVKVGRR--PVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESL 202
Query: 719 EFGFLIKDCDLQYIEE--PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776
+ D DL + EE P + + + +P DE++ P ++ +
Sbjct: 203 RAMREMADLDLLFAEELCPADDVLSRRRLVGQLDMPFIADESV----PTPADVTREVLGG 258
Query: 777 GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAY 836
AI IK + GF + + A+ G V+ + +G + + F + E + +
Sbjct: 259 SATAISIKTART-GFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAFERTSRH 317
Query: 837 LCKVMN 842
++ N
Sbjct: 318 AGELSN 323
>pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
Length = 397
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 648 ALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKVGHRIELRV 706
L+ P VA A ++ EGF +KLK P+K D ++ EVR+ VG ++L +
Sbjct: 138 GLVLGAGEPEAVAEEALAVLREGFHFVKLKAG---GPLKADIAMVAEVRRAVGDDVDLFI 194
Query: 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQK 764
D N WTY +AL ++ +L IE+P+ + + + + + P+ DE+ +
Sbjct: 195 DINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELH- 253
Query: 765 DPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARW 800
D L ++ K A G ++IK GG A RW
Sbjct: 254 DLLAIINKGAADG---LMIKTQKAGGLLKA---QRW 283
>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
Length = 372
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF-GFLIKDCD 728
G +K+KV R +P KD E ++ R+ +G +EL VDAN +T ++AL + G ++
Sbjct: 159 GIPRVKMKVGR--EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAG 216
Query: 729 LQYIEEPVQNEE 740
+ Y+EEPV +E+
Sbjct: 217 ISYLEEPVSSED 228
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P + A VE+GFTA KLKV R P KDA ++ +R++VG +E+ VDAN++
Sbjct: 151 TPDQAADELAGWVEQGFTAAKLKVGRA--PRKDAANLRAMRQRVGADVEILVDANQSLGR 208
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEE-DIIKYCEESGLPVALDETIDKFQKDPLN 768
+AL ++ + + EEP+ ++ + + G PV + + + ++ N
Sbjct: 209 HDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIATGENLYTRNAFN 263
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P + A VE+GFTA KLKV R P KDA ++ +R++VG +E+ VDAN++
Sbjct: 151 TPDQAADELAGWVEQGFTAAKLKVGRA--PRKDAANLRAMRQRVGADVEILVDANQSLGR 208
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEE-DIIKYCEESGLPVALDETIDKFQKDPLN 768
+AL ++ + + EEP+ ++ + + G PV + + + ++ N
Sbjct: 209 HDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIATGENLYTRNAFN 263
>pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
pdb|3QLD|B Chain B, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
Length = 388
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 30/232 (12%)
Query: 597 CEIFPSVR------CGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650
CE VR +E A+ + A + G + +L +++ A +
Sbjct: 95 CEALRDVRGNRXSVAAIEXAVWDWYAARTGQPLVGLL----------GGGRDRVEVSATL 144
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
++S + VE+GF +KLK+A P +D I+ VR + + + DAN
Sbjct: 145 GXSESLDVLIQSVDAAVEQGFRRVKLKIA----PGRDRAAIKAVRLRYPD-LAIAADANG 199
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLN 768
++ ++A L DLQ+IE+P+ ++ D+ K PV LDE++ ++
Sbjct: 200 SYRPEDAPVLRQL-DAYDLQFIEQPLPEDDWFDLAKLQASLRTPVCLDESVRSVRE---- 254
Query: 769 MLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLG 819
L+ A G ++ +KP +GGF A G A V +E+G+G
Sbjct: 255 -LKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGXAAWVGGXYETGVG 305
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 640 RSTSIKICALI----------DSN----KSPVEVASIATTLVEEG----FTAIKLKVARR 681
R+ ++ +C L+ +SN KSP EVA+ A L EG F +KL++ R
Sbjct: 141 RAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD 200
Query: 682 ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV 736
DP D E + V VG L VD N+ EA+ I D L++IEEPV
Sbjct: 201 -DPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIEEPV 254
>pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
pdb|3OP2|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
Length = 397
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P + A VE+GFTA KLKV R P KDA ++ R++VG +E+ VDAN++
Sbjct: 151 TPDQAADELAGWVEQGFTAAKLKVGRA--PRKDAANLRAXRQRVGADVEILVDANQSLGR 208
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEE-DIIKYCEESGLPVALDETIDKFQKDPLN 768
+AL ++ + + EEP+ ++ + + G PV + + + ++ N
Sbjct: 209 HDALAXLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIATGENLYTRNAFN 263
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+A A + E+GFT +K+KV DP D + VR++V + + +D N W
Sbjct: 156 LAGSARAVEEDGFTRLKIKVGHD-DPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQ 214
Query: 719 EFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKY 773
F KD D+ + EEP+ ++ + + +P+AL E T+D F+ +
Sbjct: 215 RFCAAAKDLDIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFR--------SF 266
Query: 774 AHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFE 815
G VA V +P V +GG +A A H ++ VV A E
Sbjct: 267 IDAGAVAYV-QPDVTRLGGITEYIQVADLALAH-RLPVVPHAGE 308
>pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP1|A Chain A, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|B Chain B, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|C Chain C, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|D Chain D, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|E Chain E, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|F Chain F, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
Length = 398
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E G IKLKV + + +D + VR+ +G L VDAN+ W + A+ G ++
Sbjct: 188 ENGIGGIKLKVGQ-PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQF 246
Query: 728 DLQYIEEPVQNEEDIIKYCEESG---LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784
+L +IEEP+ + DI + + + P+A E + F++ +L G + ++
Sbjct: 247 NLIWIEEPL-DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLIL------GNASDFVQ 299
Query: 785 PSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMN 842
P +GG I A +HG+ A E L LSA +LE +L + N
Sbjct: 300 PDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVHLHLSAAYPLEPWLE-HFEWLNPLFN 358
Query: 843 REL 845
+L
Sbjct: 359 EQL 361
>pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
Length = 383
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 7/174 (4%)
Query: 657 VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE 716
V VA I + E G + KLK DP +D + E+ ++VG R+ LR+D N W +
Sbjct: 151 VAVAEIEERIEEFGNRSFKLKXGA-GDPAEDTRRVAELAREVGDRVSLRIDINARWDRRT 209
Query: 717 ALEFGFLIKDCDLQYIEEPVQNE--EDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
AL + ++ + ++ E+P + E + + + + V DE++ P L
Sbjct: 210 ALHYLPILAEAGVELFEQPTPADDLETLREITRRTNVSVXADESV----WTPAEALAVVK 265
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
I +K + GG + IA A+ G + + E +G +A + F++
Sbjct: 266 AQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQFAA 319
>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
Length = 446
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
VA A + GF +IKLK A P + I+ + KK LR+D N NW+ + ++
Sbjct: 197 VAQAARMIEAYGFKSIKLK-AGTLPPEHEVACIKAL-KKAFPGYPLRIDPNGNWSLETSI 254
Query: 719 EFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQK 764
L+ D DLQY E+P E + + + +GLP+A + + F +
Sbjct: 255 RMAELLGD-DLQYYEDPTPGLEGMAELHKRTGLPLATNMVVTDFDE 299
>pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate
Lactonizing Enzyme
Length = 370
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 7/185 (3%)
Query: 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR 701
TSI I + S + ++ S + K+K+ R P +D E I+ + K VG R
Sbjct: 130 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGART-PAQDLEHIRSIVKAVGDR 188
Query: 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETI 759
+RVD N+ W Q A + +++ ++ +E+PV N + + E++G+ + DE++
Sbjct: 189 ASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGALRRLTEQNGVAILADESL 248
Query: 760 DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLG 819
+ E + A +K +GG N +A A+ G + +S +G
Sbjct: 249 SSLS----SAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVG 304
Query: 820 LSAYI 824
+A +
Sbjct: 305 TAAAL 309
>pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
pdb|1WUF|B Chain B, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
Length = 393
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 142/339 (41%), Gaps = 55/339 (16%)
Query: 507 LCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVA--PLEIHKENLLDA-----EE 559
L AP +SY + F +I+ L E+G GYGE+ PL + E L + +E
Sbjct: 34 LLAPFKTSYGELKSKDF----YIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKE 89
Query: 560 QLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKH 619
QL LL A+ P SWI + +E+A+ +A A
Sbjct: 90 QLLPLL-----AQRKIRKPEEIQELFSWIQGN---------EMAKAAVELAVWDAFAKME 135
Query: 620 GSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVA 679
S + I SIK+ I ++ + + V++G+ +KLK+A
Sbjct: 136 KRSLAKM----------IGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA 185
Query: 680 RRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---DLQYIEEPV 736
P KD + ++ VRK ++ L DAN + ++ L L+K+ DL+ IE+P
Sbjct: 186 ----PNKDIQFVEAVRKSF-PKLSLMADANSAYNREDFL----LLKELDQYDLEMIEQPF 236
Query: 737 QNEEDIIKYC---EESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFEN 793
+D + + ++ + LDE I + ++ + ++ AI +K + +GG +
Sbjct: 237 -GTKDFVDHAWLQKQLKTRICLDENIRSVK----DVEQAHSIGSCRAINLKLARVGGMSS 291
Query: 794 AGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLEL 832
A IA + + + E+G+G + I ++ E
Sbjct: 292 ALKIAEYCALNEILVWCGGMLEAGVGRAHNIALAARNEF 330
>pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|3CK5|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
Length = 371
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
ID ++ + A + GF AIK KV R D +D + + +R+ +G L VDAN
Sbjct: 141 IDLELPVADLKTQADRFLAGGFRAIKXKVGR-PDLKEDVDRVSALREHLGDSFPLXVDAN 199
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDI--IKYCEESGLPVALDETI 759
WT A+ + DL +IEEP ++ + + ESG +A E +
Sbjct: 200 XKWTVDGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVRESGHTIAGGENL 251
>pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
Length = 398
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 14/183 (7%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E G IKL V + + +D + VR+ +G L VDAN+ W + A+ G ++
Sbjct: 188 ENGIGGIKLAVGQ-PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQF 246
Query: 728 DLQYIEEPVQNEEDIIKYCEESG---LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784
+L +IEEP+ + DI + + + P+A E + F++ +L G + ++
Sbjct: 247 NLIWIEEPL-DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLIL------GNASDFVQ 299
Query: 785 PSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMN 842
P +GG I A +HG+ A E L LSA +LE +L + N
Sbjct: 300 PDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVHLHLSAAYPLEPWLE-HFEWLNPLFN 358
Query: 843 REL 845
+L
Sbjct: 359 EQL 361
>pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|2QDD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|3FVD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
pdb|3FVD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
Length = 378
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 97/233 (41%), Gaps = 29/233 (12%)
Query: 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV-- 698
+T + I + I S +P ++ + +G+ K+ +DP +D I+ + +
Sbjct: 132 ATPVPINSSI-STGTPDQMLGLIAEAAAQGYRTHSAKIGG-SDPAQDIARIEAISAGLPD 189
Query: 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDET 758
GHR+ D NR WT A+E ++ D +IE+P Q + P+ LDE
Sbjct: 190 GHRVTF--DVNRAWTPAIAVEVLNSVRARD--WIEQPCQTLDQCAHVARRVANPIMLDEC 245
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENA------GLIARWAQRHGKMAVVSA 812
+ +F + L ++ + IKP+ +GG A G+ W + +
Sbjct: 246 LHEFS----DHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTAL 301
Query: 813 AFESGLGLSAYIIFSSYLE--LQNAYLCK-------VMNRE--LCPPVAQGLG 854
A + L L+A ++ L L +A+L NR+ PP A GLG
Sbjct: 302 ADTAALHLAASTPEANRLASWLGHAHLADDPIPGQGARNRDGLATPPSAPGLG 354
>pdb|3H70|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus Complexed With Mg In The
Active Site
Length = 343
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 661 SIATTLVEEGFTAIKLKVARRADPIK-----DAEVIQEVR--KKVGHRIELRVDANRNWT 713
S+A G + +L+ + P + +++ ++R +++ +L +DAN +
Sbjct: 120 SVAYGATASGLSNKQLESLKATKPTRIKLKWTPQIMHQIRVLRELDFHFQLVIDANESLD 179
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773
Q+ + L ++ L YIEEP ++ + + + + P+ALDE D +N++E Y
Sbjct: 180 RQDFTQLQLLAREQVL-YIEEPFKDISMLDEVADGTIPPIALDEKATSLL-DIINLIELY 237
Query: 774 AHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ +V+KP +GG + + HG V+ +E GL
Sbjct: 238 ---NVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGL 279
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW--- 712
P +A A +++++G+ + K+KV +D + I+ VR++VG+ I +RVD N+ W
Sbjct: 142 PENMAEEAASMIQKGYQSFKMKVGTNVK--EDVKRIEAVRERVGNDIAIRVDVNQGWKNS 199
Query: 713 --TYQEALEFGFLIKDCDLQYIEEPV-QNEEDIIKYCE-ESGLPVALDETIDKFQKDPLN 768
T G L ++ +IE+PV ++ D + + ++ LP+ +DE + K
Sbjct: 200 ANTLTALRSLGHL----NIDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGL----KSSRE 251
Query: 769 MLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA--YIIF 826
M + + IK GG A +A A+ G V + ES + SA ++ F
Sbjct: 252 MRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAF 311
Query: 827 SSYL 830
S +
Sbjct: 312 SKKI 315
>pdb|2OKT|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Ligand-Free Form
pdb|2OLA|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid Synthetase
From Staphylococcus Aureus, Cubic Crystal Form
Length = 342
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 661 SIATTLVEEGFTAIKLKVARRADPIK-----DAEVIQEVR--KKVGHRIELRVDANRNWT 713
S+A G + +L+ + P + +++ ++R +++ +L +DAN +
Sbjct: 119 SVAYGATASGLSNKQLESLKATKPTRIKLKWTPQIMHQIRVLRELDFHFQLVIDANESLD 178
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773
Q+ + L ++ L YIEEP ++ + + + + P+ALDE D +N++E Y
Sbjct: 179 RQDFTQLQLLAREQVL-YIEEPFKDISMLDEVADGTIPPIALDEKATSLL-DIINLIELY 236
Query: 774 AHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ +V+KP +GG + + HG V+ +E GL
Sbjct: 237 ---NVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGL 278
>pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0K|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0U|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R0U|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R10|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R10|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R11|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R11|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R1Z|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
pdb|3R1Z|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
Length = 379
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 43/345 (12%)
Query: 492 ICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK 551
+ KI ++ S+ +I P ++I RS + + L L++G GYG VAP
Sbjct: 2 VSKIIDIKTSIIKI----PLKRTFITAVRSTNHIDSLAVELTLDNGVKGYG-VAPATTAI 56
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF--PSVRCGLEM 609
D + ++++ F P++ GS S TL + ++ + + +++
Sbjct: 57 TG--DTLQGXQYIIR-------EIFAPVILGSDLSDYKQTLELAFKKVXFNSAAKXAIDL 107
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A + +A + S +L ++ SI I + +I VE
Sbjct: 108 AYHDLLAKEQDISVAKLL----------GAKANSIVTDVSISCGNVAETIQNIQNG-VEA 156
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK--DC 727
FTAIK+K AD +D ++++ + + I+ R DAN+ W + +F I
Sbjct: 157 NFTAIKVKTG--ADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSL 214
Query: 728 DLQYIEEPVQNEE-----DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782
+++ IE+PV+ + +I K+ S +PV DE++ KD ++++ A I
Sbjct: 215 NVEIIEQPVKYYDIKAXAEITKF---SNIPVVADESVFD-AKDAERVIDEQACN---XIN 267
Query: 783 IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFS 827
IK + GG A I + A G V ES G+ A F+
Sbjct: 268 IKLAKTGGILEAQKIKKLADSAGISCXVGCXXESPAGILATASFA 312
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 29/234 (12%)
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA--------- 660
A+ +A+ G+ + + D + R+ + +C L+ +K VEV
Sbjct: 92 AVSDALGSYRGNRMARAMVEMAAWD--LWARTLGVPLCTLLGGHKEQVEVGVSLGIQADE 149
Query: 661 ----SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE 716
+ VE+G+ IKLK+ P D + ++ R+ I L VDAN +T +
Sbjct: 150 QATVDLVRRHVEQGYRRIKLKI----KPGWDVQPVRATREAFPD-IRLTVDANSAYTLAD 204
Query: 717 ALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEES---GLPVALDETIDKFQKDPLNMLEKY 773
A L + DL YIE+P+ +D++ + E + P+ LDE++ D L
Sbjct: 205 AGRLRQL-DEYDLTYIEQPLA-WDDLVDHAELARRIRTPLCLDESVAS-ASDARKALALG 261
Query: 774 AHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFS 827
A G+ I +K + +GG + + AQ G ESG+G + I S
Sbjct: 262 AG-GV--INLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS 312
>pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JW7|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JZU|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3K1G|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3KUM|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
Length = 354
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
P +A A V+ GF +K+KV + D ++ +R+ VG I+LR+DAN+ WT +
Sbjct: 140 PNVMAQKAVEKVKLGFDTLKIKVGTGIEA--DIARVKAIREAVGFDIKLRLDANQAWTPK 197
Query: 716 EALEFGFLIKDCDLQYIEEPVQNEE 740
+A++ + D ++ +E+PV+ +
Sbjct: 198 DAVKAIQALADYQIELVEQPVKRRD 222
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 669 EGFTAIKLK----VARRAD--PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
+GFTA K++ V R D P + E+I +R+++G ++L +DAN +T A+E G
Sbjct: 161 QGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGH 220
Query: 723 LIKDCDLQYIEEP 735
+++D + EEP
Sbjct: 221 MLQDHGFCHFEEP 233
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 669 EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728
EGF A K+K+ + +D VI VR+ +G + L +DAN +T EA+ G
Sbjct: 158 EGFHACKIKIGFGVE--EDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFG 215
Query: 729 LQYIEEPVQNEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS 786
+ + EEPV E+ +G +PVA ET M + + G V I ++P
Sbjct: 216 IDWFEEPVVPEQLDAYARVRAGQPIPVAGGET----WHGRYGMWQALSA-GAVDI-LQPD 269
Query: 787 V--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830
+ GGF IA A HG + +V + +G+ ++A + F + +
Sbjct: 270 LCGCGGFSEIQKIATLATLHG-VRIVPHVWGTGVQIAAALQFMAAM 314
>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
Length = 392
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
Query: 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN 711
S +P + EG+ A KLKV D +D VR+ +G L DAN+
Sbjct: 152 SGINPENPEDVVARKAAEGYRAFKLKVGF--DDARDVRNALHVRELLGAATPLMADANQG 209
Query: 712 WTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE---ESGLPVALDETI 759
W A + + L ++EEP++ + ++ E + +P+A E I
Sbjct: 210 WDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENI 260
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKV-GHRIELRVDANRNWT 713
P E A A EG++ +++K+ R PI+ D E I++V + V G I L D NR WT
Sbjct: 151 PDEAARQALEKQREGYSRLQVKLGAR--PIEIDIEAIRKVWEAVRGTGIALAADGNRGWT 208
Query: 714 YQEALEFGFLIKDC-DLQYI-EEPVQNEEDI 742
++AL F ++C D+ ++ E+P + ED+
Sbjct: 209 TRDALRFS---RECPDIPFVMEQPCNSFEDL 236
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
VA + E GF +IKLK P ++AE IQ +R + LR+D N WT + ++
Sbjct: 193 VAQARLLIGEYGFRSIKLK-GGVFPPEQEAEAIQALRDAF-PGLPLRLDPNAAWTVETSI 250
Query: 719 EFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVA 754
G + D L+Y+E+P + + + E +P+A
Sbjct: 251 RVGRAL-DGVLEYLEDPTPGIDGMARVAAEVPMPLA 285
>pdb|3CB3|A Chain A, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|B Chain B, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|C Chain C, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
pdb|3CB3|D Chain D, Crystal Structure Of L-talarate Dehydratase From
Polaromonas Sp. Js666 Complexed With Mg And L-glucarate
Length = 393
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A+ +E G IKLKV + D D + VRK +G + L VDAN+ W A
Sbjct: 170 ASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCR 228
Query: 723 LIKDCDLQYIEEPV 736
+ + +L +IEEP+
Sbjct: 229 IFEPFNLVWIEEPL 242
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 123/313 (39%), Gaps = 60/313 (19%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWI 588
+L + DG VG+GE AP E+ A L Y PL+ G+
Sbjct: 39 LLEVTSADGIVGWGEAAPWEVFTGTPEAAFSALDI-----------YLRPLILGA----- 82
Query: 589 WSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA 648
P R MA ++ + V HG + + L +I ++T + +
Sbjct: 83 ------------PIKRVRELMARMDKMLVGHGEAKAAVEMALLDI----LGKATGLSVAD 126
Query: 649 LIDS---NKSPVEVASIAT-----------TLVEEGFTAIKLKVARRADPIKDAEVIQEV 694
L+ ++ P+ SIA +V G T K+K + ++ +++ +
Sbjct: 127 LLGGRVRDRIPLSF-SIADPDFDADLERMRAMVPAGHTVFKMKTGVKPH-AEELRILETM 184
Query: 695 RKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL---QYIEEPVQNEEDIIKYCEESGL 751
R + G RI+LR+D N+ T A++ +++D D +IE+PV +G
Sbjct: 185 RGEFGERIDLRLDFNQALTPFGAMK---ILRDVDAFRPTFIEQPVPRRH----LDAMAGF 237
Query: 752 PVALDETI--DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAV 809
ALD I D+ D ++++E AI +K GG A + A G
Sbjct: 238 AAALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGY 297
Query: 810 VSAAFESGLGLSA 822
+E G+ L+A
Sbjct: 298 GGTLWEGGIALAA 310
>pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
pdb|2PMQ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
Length = 377
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKV-GHRIELRVDANRNWT 713
P E A A EG++ +++K+ R PI+ D E I++V + V G I L D NR WT
Sbjct: 144 PDEAARQALEKQREGYSRLQVKLGAR--PIEIDIEAIRKVWEAVRGTGIALAADGNRGWT 201
Query: 714 YQEALEFGFLIKDC-DLQYI-EEPVQNEEDI 742
++AL F ++C D+ ++ E+P + ED+
Sbjct: 202 TRDALRFS---RECPDIPFVXEQPCNSFEDL 229
>pdb|2OG9|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Polaromonas Sp. Js666
pdb|2OG9|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Polaromonas Sp. Js666
Length = 393
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A+ +E G IKLKV + D D + VRK +G + L VDAN+ W A
Sbjct: 170 ASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDAVPLXVDANQQWDRPTAQRXCR 228
Query: 723 LIKDCDLQYIEEPV 736
+ + +L +IEEP+
Sbjct: 229 IFEPFNLVWIEEPL 242
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
++ +A V +GF IKLKV A+ D + R +G I + VDAN+ W A
Sbjct: 201 KLVRLAKEAVADGFRTIKLKVG--ANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPA 258
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
+++ + + D+ +IEEP + +D++ +
Sbjct: 259 IDWMRQLAEFDIAWIEEPT-SPDDVLGHA 286
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
+A V +GF IKLKV A+ D + R +G I + VDAN+ W A+++
Sbjct: 205 LAKEAVADGFRTIKLKVG--ANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWM 262
Query: 722 FLIKDCDLQYIEEPVQNEEDIIKYC 746
+ + D+ +IEEP + +D++ +
Sbjct: 263 RQLAEFDIAWIEEPT-SPDDVLGHA 286
>pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp.
pdb|3U9I|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp
Length = 393
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 40/247 (16%)
Query: 528 FILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-FSS 586
++++ L DG+ GYGE AP D M A I L++G+
Sbjct: 58 LLVAVELTDGTRGYGEAAPFPAFNGETQD-----------MAHAAILAARSLVEGADVRE 106
Query: 587 WIWSTLGIPACE-IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIK 645
W L +PA + S RC +E AIL+A+ + PL +TS++
Sbjct: 107 WRRIALALPALPGMTGSARCAIETAILDALTRRA-------RLPLWAF---FGGAATSLE 156
Query: 646 ICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
I + S A A +V G T IK+K+ DP DA I+ + + + +R
Sbjct: 157 TDVTI-TTGSVTAAARAAQAIVARGVTTIKIKIG-AGDP--DATTIRTMEHDLARIVAIR 212
Query: 706 ---------VDANRNWTYQEALEFGFLIKDCDL--QYIEEPV--QNEEDIIKYCEESGLP 752
+D N +T +AL ++ + E+PV +EE + + +P
Sbjct: 213 DVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALFEQPVAKDDEEGLRRLTATRRVP 272
Query: 753 VALDETI 759
VA DE++
Sbjct: 273 VAADESV 279
>pdb|2OZT|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1
Length = 332
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 60/272 (22%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLD 556
R ++ +Y L P T++ R G L L E G VGYGE+APL L+
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWR----SRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN 59
Query: 557 AE----EQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
A+ +QL L A I LP + F++ W ++G
Sbjct: 60 ADIALCQQLPGHLTPEIXATIPEALPAAQFGFAT-AWQSVG------------------- 99
Query: 613 NAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
+ R ICAL+ S ++ +E + + G T
Sbjct: 100 -----------------------RLPYRVRPWPICALLGSGQAALEQWQQS---WQRGQT 133
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE-FGFLIK--DCDL 729
K KV + P ++ +++ + + +LR+DAN +W A F +L + + +
Sbjct: 134 TFKWKVGVXS-PEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI 192
Query: 730 QYIEEPVQNE--EDIIKYCEESGLPVALDETI 759
+Y+E+P+ + + ++ + +ALDE++
Sbjct: 193 EYVEQPLPPDQWQALLSLAQTVTTAIALDESV 224
>pdb|4HCH|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Agrobacterium Tumefaciens Complexed With Magnesium And
L-Tartrate
pdb|4HCH|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Agrobacterium Tumefaciens Complexed With Magnesium And
L-Tartrate
pdb|4HCL|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Agrobacterium Tumefaciens Complexed With Magnesium And
L-Lyxarohydroxamate
pdb|4HCL|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Agrobacterium Tumefaciens Complexed With Magnesium And
L-Lyxarohydroxamate
Length = 402
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 655 SPVEVASIATTLVEEGFTAIKL-----KVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+P + A TLV+ G+ IKL V+ D D + VR+ VG I L +DA
Sbjct: 169 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAF 228
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY 745
++ +AL G ++ +IEEP+ +E+ + Y
Sbjct: 229 HWYSRTDALALGRGLEKLGFDWIEEPM-DEQSLSSY 263
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/277 (19%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 656 PVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P + + A +++E GF+AIKLK A P ++ ++ +R LR+D N WT
Sbjct: 194 PDGIVAQARRMIDEYGFSAIKLKGGVFA-PEEEMAAVEALRAAFPDH-PLRLDPNAAWTP 251
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
Q +++ ++ L+Y+E+P + + + ++ +P+A + + F + P + +
Sbjct: 252 QTSVKVAAGLEGV-LEYLEDPTPGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKN-- 308
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQN 834
+ ++ GG + + L+A G + + G+ L+A + ++
Sbjct: 309 --SVQVVLSDHHYWGGLQRSRLLAGICDTFGLGLSMHSNSHLGISLAAMVHLAAATP-NL 365
Query: 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQ 894
Y C + W EDV P ++ N C G V+ + +
Sbjct: 366 TYACDTH--------------WPWRHEDVVA-PGAL--NFCDGEVQVPATPGLGV----E 404
Query: 895 INNDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIG 931
I+ D + ++ EQ LR + +D +++ + G
Sbjct: 405 IDEDALA--ALHEQYLR--CGIRDRDDTGYMRSIDPG 437
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
+A V +GF IKLKV A+ D + R +G I VDAN+ W A+++
Sbjct: 208 LAKEAVADGFRTIKLKVG--ANVQDDIRRCRLARAAIGPDIAXAVDANQRWDVGPAIDWX 265
Query: 722 FLIKDCDLQYIEEPVQNEEDIIKYC 746
+ + D+ +IEEP + +D++ +
Sbjct: 266 RQLAEFDIAWIEEPT-SPDDVLGHA 289
>pdb|3H7V|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1 Complexed With Mg In
The Active Site
Length = 330
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 108/272 (39%), Gaps = 60/272 (22%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLD 556
R ++ +Y L P T++ R G L L E G VGYGE+APL L+
Sbjct: 2 RWQWRIYEEPLQEPLTTAQGVWR----SRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN 57
Query: 557 AE----EQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
A+ +QL L A I LP + F++ W ++G
Sbjct: 58 ADIALCQQLPGHLTPEIXATIPEALPAAQFGFAT-AWQSVG------------------- 97
Query: 613 NAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
+ R ICAL+ S ++ +E + + G T
Sbjct: 98 -----------------------RLPYRVRPWPICALLGSGQAALEQWQQS---WQRGQT 131
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE-FGFLIK--DCDL 729
K KV + P ++ +++ + + +LR+DAN +W A F +L + + +
Sbjct: 132 TFKWKVGVXS-PEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI 190
Query: 730 QYIEEPVQNE--EDIIKYCEESGLPVALDETI 759
+Y+E+P+ + + ++ + +ALDE++
Sbjct: 191 EYVEQPLPPDQWQALLSLAQTVTTAIALDESV 222
>pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R S+++ + S + ++A
Sbjct: 104 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDSLEVAWTLASGDTARDIAE 153
Query: 662 IATTLVEEGFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
L KLK+ A+P+ +D + + +++++G +RVD N+ W +A+
Sbjct: 154 ARHMLEIRRHRVFKLKIG--ANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRA 211
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQ 763
++ D + IE+P+ N ++ + + P+ DE+I+ +
Sbjct: 212 CQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVE 256
>pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R S+++ + S + ++A
Sbjct: 104 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDSLEVAWTLASGDTARDIAE 153
Query: 662 IATTLVEEGFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
L KLK+ A+P+ +D + + +++++G +RVD N+ W +A+
Sbjct: 154 ARHMLEIRRHRVFKLKIG--ANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRA 211
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQ 763
++ D + IE+P+ N ++ + + P+ DE+I+ +
Sbjct: 212 CQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVE 256
>pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
pdb|3T9P|B Chain B, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
Length = 388
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 668 EEGFTAIKLKVARRAD------PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
++GFTA K +V A P + V+ V + +G IE VD N ++ A+E G
Sbjct: 160 DKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAIEVG 219
Query: 722 FLIKDCDLQYIEEP 735
L++D + + EEP
Sbjct: 220 KLLQDNGIGHFEEP 233
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R S+++ + S + ++A
Sbjct: 101 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDSLEVAWTLASGDTARDIAE 150
Query: 662 IATTLVEEGFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
L KLK+ A+P+ +D + + +++++G +RVD N+ W +A+
Sbjct: 151 ARHMLEIRRHRVFKLKIG--ANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRA 208
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQ 763
++ D + IE+P+ N ++ + + P+ DE+I+ +
Sbjct: 209 CQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVE 253
>pdb|1RVK|A Chain A, Crystal Structure Of Enolase Agr_l_2751 From Agrobacterium
Tumefaciens
Length = 382
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 655 SPVEVASIATTLVEEGFTAIKL-----KVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+P + A TLV+ G+ IKL V+ D D + VR+ VG I L +DA
Sbjct: 149 TPEDYGRFAETLVKRGYKGIKLHTWXPPVSWAPDVKXDLKACAAVREAVGPDIRLXIDAF 208
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY 745
++ +AL G ++ +IEEP +E+ + Y
Sbjct: 209 HWYSRTDALALGRGLEKLGFDWIEEP-XDEQSLSSY 243
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 369
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R S+++ + S + ++A
Sbjct: 101 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDSLEVAWTLASGDTARDIAE 150
Query: 662 IATTLVEEGFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
L KLK+ A+P+ +D + + +++++G +RVD N+ W +A+
Sbjct: 151 ARHMLEIRRHRVFKLKIG--ANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRA 208
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQ 763
++ D + IE+P+ N ++ + + P+ DE+I+ +
Sbjct: 209 CQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVE 253
>pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi
Length = 385
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 27/173 (15%)
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE--EDIIKYCEESGLPVALDETIDK 761
+RVD N+ EA+ + +IE+PV+ E + + + +P+ DE++
Sbjct: 195 VRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQPVRAHHFELMARLRGLTDVPLLADESV-- 252
Query: 762 FQKDPLNMLEKYAHPGIV-AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
P +M+ + AH GI + IK GG A +AR A HG MA FE+GL
Sbjct: 253 --YGPEDMV-RAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGL-- 307
Query: 821 SAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQ---WLKEDVTTDPISI 870
A+L P + G YQ +L ED+ P +
Sbjct: 308 --------------AHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRV 346
>pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|C Chain C, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|D Chain D, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TTE|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
pdb|3TTE|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
Length = 383
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 605 CGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIAT 664
GL+MA +A+ G P+ E+ ++ + ++D+ + ++ T
Sbjct: 128 SGLDMAFWDALGQLAGK-------PVVELLGGSARPIPAYDSYGVLDARD---DERTLRT 177
Query: 665 TLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724
E GF AIK K D D +I+ +R +G I L +D N++ EA +
Sbjct: 178 ACDEHGFRAIKSK-GGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARL 236
Query: 725 KDCDLQYIEEPVQNE 739
D DL +IEEPV E
Sbjct: 237 ADYDLTWIEEPVPQE 251
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
+A V +GF IKL V A+ D + R +G I + VDAN+ W A+++
Sbjct: 205 LAKEAVADGFRTIKLAVG--ANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWM 262
Query: 722 FLIKDCDLQYIEEPVQNEEDIIKYC 746
+ + D+ +IEEP + +D++ +
Sbjct: 263 RQLAEFDIAWIEEPT-SPDDVLGHA 286
>pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
pdb|4IZG|B Chain B, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
Length = 391
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKV-GHRIELRVDANRNWT 713
P E+A IA V EGF +++K+ R P++ D E +++V +++ G L VD NR+
Sbjct: 165 PDEIARIAAEKVAEGFPRLQIKIGGR--PVEIDIETVRKVWERIRGTGTRLAVDGNRSLP 222
Query: 714 YQEALEFGFLIKDC-DLQYI-EEPVQNEEDIIK---------YCEESG 750
++AL L ++C ++ ++ E+P E+I Y +ESG
Sbjct: 223 SRDALR---LSRECPEIPFVLEQPCNTLEEIAAIRGRVQHGIYLDESG 267
>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Silicibacter Pomeroyi
Length = 378
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 627 LYPLTEIDE---EISKRSTSIKICALIDS-NKSPVEVAS-IATTLVEE-----------G 670
LY + ID +I+ ++ + I L+ +++P +AS + VEE G
Sbjct: 101 LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRG 160
Query: 671 FTAIKLKVA----RRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
+ A +K+ R I+D E I+E + V + D NR WT Q+AL +D
Sbjct: 161 YVAHSVKIGGDVERDIARIRDVEDIREPGEIVLY------DVNRGWTRQQALRVMRATED 214
Query: 727 CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+ + E+P + +DI PV++DE + Q + A G+ + IK
Sbjct: 215 LHVMF-EQPGETLDDIAAIRPLHSAPVSVDECLVTLQD-----AARVARDGLAEVFGIKL 268
Query: 786 SVIGGFENAGLIARWAQRHG 805
+ +GG A + A HG
Sbjct: 269 NRVGGLTRAARMRDIALTHG 288
>pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid
Synthet Kosmotoga Olearia
Length = 400
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 20/236 (8%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTE---IDEEISKRSTSIKICALI---DSNKSP 656
RCG+E A + IA K+ S ++ + + +E + I+ A + + +
Sbjct: 106 ARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIE 165
Query: 657 VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE 716
+ + +L +EG+ IK+K+ P D E +QE R+ VG L DAN ++ +
Sbjct: 166 TLIHQVEESL-QEGYRRIKIKIK----PGWDVEPLQETRRAVGDHFPLWTDANSSFELDQ 220
Query: 717 ALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
F + + E+P+ E D+ + E P+ LDE++ + + E A
Sbjct: 221 WETFKAM-DAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSR-----VAEFVA 274
Query: 775 HPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSY 829
GI I IK +GG A I + A +G ESGLG I +S+
Sbjct: 275 KLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASF 330
>pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
pdb|4E8G|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
Length = 391
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKV-GHRIELRVDANRNWT 713
P E+A IA V EGF +++K+ R P++ D E +++V +++ G L VD NR+
Sbjct: 165 PDEIARIAAEKVAEGFPRLQIKIGGR--PVEIDIETVRKVWERIRGTGTRLAVDGNRSLP 222
Query: 714 YQEALEFGFLIKDC-DLQYI-EEPVQNEEDIIK---------YCEESG 750
++AL L ++C ++ ++ E+P E+I Y +ESG
Sbjct: 223 SRDALR---LSRECPEIPFVLEQPCNTLEEIAAIRGRVQHGIYLDESG 267
>pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJI|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJL|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Pro-D-Glu;
Nonproductive Substrate Binding.
pdb|3IJQ|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding.
pdb|3IJQ|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
Substrate Binding
Length = 338
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT-YQEALEFGFLIKDCDL 729
F +K+K+ R D E+I+ +R + + VDAN+ W Q AL+ +K+ +
Sbjct: 149 FNILKVKLGRD----NDKEMIETIRSVT--DLPIAVDANQGWKDRQYALDMIHWLKEKGI 202
Query: 730 QYIEEPVQNEE--DIIKYCEESGLPVALDETIDKF 762
IE+P+ E+ DI ++S LPV DE++ +
Sbjct: 203 VMIEQPMPKEQLDDIAWVTQQSPLPVFADESLQRL 237
>pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R S+++ + S + ++A
Sbjct: 103 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDSLEVAWTLASGDTARDIAE 152
Query: 662 IATTLVEEGFTAIKLKVARRADPI-KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
L KLK+ A+P+ ++ + + +++++G +RVD N+ W +A+
Sbjct: 153 ARHMLEIRRHRVFKLKIG--ANPVEQNLKHVVTIKRELGDSASVRVDVNQYWDESQAIRA 210
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQ 763
++ D + IE+P+ N ++ + + P+ DE+I+ +
Sbjct: 211 CQVLGDNGIDLIEQPISRINRGGQVRLNQRTPAPIMADESIESVE 255
>pdb|3VA8|A Chain A, Crystal Structure Of Enolase Fg03645.1 (Target Efi-502278)
From Gibberella Zeae Ph-1 Complexed With Magnesium,
Formate And Sulfate
Length = 445
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 656 PVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P V A +++E GF AIKLK P + I+ + K + LR+D N WT
Sbjct: 192 PEGVVKQAKKIIDEYGFKAIKLK-GGVFPPADEVAAIKALHKAF-PGVPLRLDPNAAWTV 249
Query: 715 QEALEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771
+ + ++ K+ + ++Y+E+P E + +E+ +P+A + + F P ++L+
Sbjct: 250 ETS---KWVAKELEGIVEYLEDPAGEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQ 305
>pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|B Chain B, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|C Chain C, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|D Chain D, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
Length = 388
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 670 GFTAIKLK----VARRAD--PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723
GF A K++ V R D P + E++ R++ G L +DAN + +A+E G L
Sbjct: 162 GFDAFKVRAGAEVGRGRDEWPGRTEEIVPTXRREXGDSAALLIDANSCYAPAQAIELGKL 221
Query: 724 IKDCDLQYIEEP 735
++D + EEP
Sbjct: 222 LQDHGFSHFEEP 233
>pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
pdb|1WUE|B Chain B, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
Length = 386
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 22/227 (9%)
Query: 604 RCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIA 663
+ LE AI + A + S P ++R + I I + ++
Sbjct: 120 KAALETAIWDLYAKRQQKSLTEFFGP--------TRRKIPVGISLGIQEDLP--QLLKQV 169
Query: 664 TTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723
VE+G+ +KLK+ P D E + +R+ + + L VDAN +T + + L
Sbjct: 170 QLAVEKGYQRVKLKIR----PGYDVEPVALIRQHFPN-LPLMVDANSAYTLADLPQLQRL 224
Query: 724 IKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAI 781
L IE+P ++ D + E + LDE I + + + A +I
Sbjct: 225 -DHYQLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRSLKDCQVAL----ALGSCRSI 279
Query: 782 VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS 828
+K +GG A IA + Q + + + FESG+G + + F+S
Sbjct: 280 NLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQFAS 326
>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
Superfamily Member 1 (Enosf1)
Length = 441
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
+++G+T K+KV AD D Q +R +G L +DAN+ W EA+E+ +
Sbjct: 213 LKDGWTRFKVKVG--ADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAK 270
Query: 727 CDLQYIEEPVQNEEDIIKY 745
+IEEP + +DI+ +
Sbjct: 271 FKPLWIEEPT-SPDDILGH 288
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHG 976
+++ +HG LG+G +W P++ ++ + +++DLPGHG
Sbjct: 18 LVVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHG 55
>pdb|2O56|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|C Chain C, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|D Chain D, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|E Chain E, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|F Chain F, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|G Chain G, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
pdb|2O56|H Chain H, Crystal Structure Of A Member Of The Enolase Superfamily
From Salmonella Typhimurium
Length = 407
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 599 IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKS--- 655
IF + G+++A+ + G +L + E+I ++ ++ S+K
Sbjct: 94 IFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSR--EKIRTYASQLQFGWGDGSDKDMLT 151
Query: 656 -PVEVASIATTLVEEGFTAIKLKVA---RRAD--------PIKDA------EVIQEVRKK 697
P + A A T V EG+ AIK+ R + P+ D + + +R
Sbjct: 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDA 211
Query: 698 VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVAL 755
VG +++ + + A++FG +I++ + Y EEPV N + + ++ +P+A
Sbjct: 212 VGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNIPLAA 271
Query: 756 DETI 759
E I
Sbjct: 272 GERI 275
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Query: 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
E+A A +G LKV R D E+ VR ++G LR+DAN W+ +A
Sbjct: 150 ELARDAAVGHAQGERVFYLKVGRGEK--LDLEITAAVRGEIGD-ARLRLDANEGWSVHDA 206
Query: 718 LEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775
+ ++ D+++IE+P + E+ G+P+ D+ ++ E
Sbjct: 207 INXCRKLEKYDIEFIEQPTVSWSIPAXAHVREKVGIPIVADQAAFTL----YDVYEICRQ 262
Query: 776 PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
I I P IGG + A A+ G + ++F +G+
Sbjct: 263 RAADXICIGPREIGGIQPXXKAAAVAEAAGLKICIHSSFTTGI 305
>pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
Length = 381
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 130/360 (36%), Gaps = 53/360 (14%)
Query: 524 CREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG- 582
C+ I+ L DG G GE + + E + H++T PLLKG
Sbjct: 32 CQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLT--------PLLKGQ 83
Query: 583 ---SFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639
+ ++ G F + +E A+L+A G +L
Sbjct: 84 PADNLNALTARMNGAIKGNTF--AKSAIETALLDAQGKALGLPVSALLG---------GA 132
Query: 640 RSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG 699
T++ + + S + ++A L E A KLK+ R + D + + + +G
Sbjct: 133 LQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR-ELATDLRHTRAIVEALG 191
Query: 700 HRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEED--IIKYCEESGLPVALDE 757
R +RVD N+ W + + + IE+PV ++ +++ ++ + DE
Sbjct: 192 DRASIRVDVNQAWDAATGAKGCRELAAMGVDLIEQPVSAHDNAALVRLSQQIETAILADE 251
Query: 758 TI----DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA 813
+ D +Q YA +K + GG + +AR AQ G
Sbjct: 252 AVATAYDGYQLAQQGFTGAYA--------LKIAKAGGPNSVLALARVAQAAGIGLYGGTM 303
Query: 814 FESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHN 873
E +G A + S L LQ E+ P+ LK+D+ + P++
Sbjct: 304 LEGTVGTVASLHAWSTLPLQ-------WGTEMFGPL--------LLKDDIVSVPLTFADG 348
>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
Length = 392
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKL------------KVARRADPIKDAEV----IQEVRKKV 698
+P E A ++EG+ A+K V RR+ + E+ ++ VR
Sbjct: 137 TPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSXSAEAIELAYRRVKAVRDAA 196
Query: 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEED--IIKYCEESGLPVALD 756
G IEL VD + T E + F I + D+ ++EEP ++ + E+ LP+A+
Sbjct: 197 GPEIELXVDLSGGLTTDETIRFCRKIGELDICFVEEPCDPFDNGALKVISEQIPLPIAVG 256
Query: 757 ETI 759
E +
Sbjct: 257 ERV 259
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+A A + G+ A+KL++ A D E ++ VRK +G +++ DAN +T +A
Sbjct: 189 LAEEAQEYIARGYKALKLRIGDAAR--VDIERVRHVRKVLGDEVDILTDANTAYTMADAR 246
Query: 719 EFGFLIKDCDLQYIEEP 735
++ + ++EEP
Sbjct: 247 RVLPVLAEIQAGWLEEP 263
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHG 976
+ +L+FLHGFL + ++ + + I+IDLPGHG
Sbjct: 16 NQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHG 54
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKR-STSIKICALIDSNKSPVEVAS 661
+ G+E A+L+A + G P++E+ + R ++ + + S + ++A
Sbjct: 106 AKSGIESALLDAQGKRLG-------LPVSEL---LGGRVRDALPVAWTLASGDTAKDIAE 155
Query: 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
L KLK+ + +D + ++K +G +RVD N+ W AL
Sbjct: 156 AQKMLDLRRHRIFKLKIGA-GEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRAC 214
Query: 722 FLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
++ + IE+P+ N +++ S P+ DE+I+ + D N+ + A
Sbjct: 215 RILGGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVE-DAFNLAREGA 268
>pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXL|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
Length = 383
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K K+ A +D V++ +R+ VG + VD N++ A++
Sbjct: 176 AVTAAELGFRAVKTKIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 234
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 235 ALQQEGVTWIEEP 247
>pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With
(S)-Atrolactate
Length = 359
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K K+ A +D V++ +R+ VG + VD N++ A++
Sbjct: 152 AVTAAELGFRAVKTKIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 210
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 211 ALQQEGVTWIEEP 223
>pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With
(s)-atrolactate
Length = 359
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K K+ A +D V++ +R+ VG + VD N++ A++
Sbjct: 152 AVTAAELGFRAVKTKIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 210
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 211 ALQQEGVTWIEEP 223
>pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (r)-alpha-phenylglycidate
Length = 359
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K K+ A +D V++ +R+ VG + VD N++ A++
Sbjct: 152 AVTAAELGFRAVKTKIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 210
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 211 ALQQEGVTWIEEP 223
>pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (R)-Alpha-Phenylglycidate
pdb|2MNR|A Chain A, Mechanism Of The Reaction Catalyzed By Mandelate Racemase.
2. Crystal Structure Of Mandelate Racemase At 2.5
Angstroms Resolution: Identification Of The Active Site
And Possible Catalytic Residues
Length = 357
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K K+ A +D V++ +R+ VG + VD N++ A++
Sbjct: 150 AVTAAELGFRAVKTKIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 208
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 209 ALQQEGVTWIEEP 221
>pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
pdb|2OZ8|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
Length = 389
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 598 EIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDE----EISKRSTSIKICALIDSN 653
E++PS++ +A+++ + G + P E + +++ + + + L+ S
Sbjct: 70 EVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSR 129
Query: 654 KSPVEV--------------ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG 699
++ V+ S+ + G++A K+KV R D +D ++ ++ V
Sbjct: 130 RNRVKAYASGLDFHLDDDAFVSLFSHAASIGYSAFKIKVGHR-DFDRDLRRLELLKTCVP 188
Query: 700 HRIELRVDANRNWTYQEALEFGFLIKDC--DLQYIEEPV 736
++ +D N WT +EAL I++ DL ++E+P+
Sbjct: 189 AGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPI 227
>pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
Length = 365
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 137/333 (41%), Gaps = 41/333 (12%)
Query: 510 PPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLLDAEEQLRFLLHFM 568
P T + + ++ ++ + L DG++G GE AP + E + L +
Sbjct: 18 PLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHL 77
Query: 569 TGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628
GA + + L + + A + RCGLEMA+L+A+ +H L++ +
Sbjct: 78 LGADVRGWRKL----------AAMLDHAEHEAAAARCGLEMAMLDAL-TRHYHMPLHVFF 126
Query: 629 PLTEIDEEISKR-STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKD 687
+SK+ T + I A V A+ A ++ G +IK+K A D D
Sbjct: 127 ------GGVSKQLETDMTITA-----GDEVHAAASAKAILARGIKSIKVKTA-GVDVAYD 174
Query: 688 AEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI--EEPVQNEE--DII 743
++ + + L VD N + + AL F K + + E+P+ E+ +
Sbjct: 175 LARLRAIHQAA-PTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMA 233
Query: 744 KYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQ 802
+ +SG VA DE+ + D L + A G +++ IK G E +IA AQ
Sbjct: 234 QVTAQSGFAVAADESA-RSAHDVL----RIAREGTASVINIKLMKAGVAEGLKMIA-IAQ 287
Query: 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNA 835
G ++ ES L +S FS+ L N
Sbjct: 288 AAGLGLMIGGMVESILAMS----FSANLAAGNG 316
>pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)-
Mandelate
Length = 359
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A T E GF A+K ++ A +D V++ +R+ VG + VD N++ A++
Sbjct: 152 AVTAAELGFRAVKTRIGYPALD-QDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQ 210
Query: 723 LIKDCDLQYIEEP 735
++ + +IEEP
Sbjct: 211 ALQQEGVTWIEEP 223
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 16/187 (8%)
Query: 644 IKICALIDSNKSPVEVAS---IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH 700
IK+C I ++ EV S + +E+GF +L V + D D E + V+++ G
Sbjct: 128 IKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDA--DEEFLSRVKEEFGS 185
Query: 701 RIELR-VDANR--NWTYQEALEFGFLIKDCDLQYIEEPV-QNEED-IIKYCEESGLPVAL 755
R+ ++ D + NW D L+ IE P +N+ D + + ++ P++
Sbjct: 186 RVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRLKTDYPIS- 244
Query: 756 DETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815
E + F++ M++K A I I P IGG +A A A+ K V+ E
Sbjct: 245 -EHVWSFKQQQ-EMIKKDA---IDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE 299
Query: 816 SGLGLSA 822
+G +A
Sbjct: 300 LSVGTAA 306
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 644 IKICALIDSNKSPVEVAS---IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH 700
IK+C I ++ EV S + +E+GF +L V + D D E + V+++ G
Sbjct: 128 IKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDA--DEEFLSRVKEEFGS 185
Query: 701 RIELR-VDANR--NWTYQEALEFGFLIKDCDLQYIEEPV-QNEED-IIKYCEESGLPVAL 755
R+ ++ D + NW D L+ IE P +N+ D + + ++ P++
Sbjct: 186 RVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRLKTDYPIS- 244
Query: 756 DETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815
E + F K M++K A I I P IGG +A A A+ K V+ E
Sbjct: 245 -EHVWSF-KQQQEMIKKDA---IDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE 299
Query: 816 SGLGLSA 822
+G +A
Sbjct: 300 LSVGTAA 306
>pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
Length = 388
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E G +K KV + +DA I R+ G + +DAN+ + A++ I D
Sbjct: 177 ELGLAGVKFKVGGLS-AAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADL 235
Query: 728 DLQYIEEPVQNEED 741
++++ EEPV+ D
Sbjct: 236 NIRWFEEPVEWHND 249
>pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
pdb|3T8Q|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
Length = 370
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 670 GFTAIKLKVA----RRAD--PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723
GF A K ++ R D P + E++ +R + + L VDAN + ++A+E G +
Sbjct: 142 GFDAFKFRIGAECGRGQDEWPGRTEEIVPTIRAAMDDSVALLVDANSCYGPEQAIEVGKM 201
Query: 724 IKDCDLQYIEEP 735
++ + + EEP
Sbjct: 202 LEQNGISHYEEP 213
>pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
Length = 379
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E G +K KV + +DA I R+ G + +DAN+ + A++ I D
Sbjct: 160 ELGLAGVKFKVGGLS-AAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADL 218
Query: 728 DLQYIEEPVQNEED 741
++++ EEPV+ D
Sbjct: 219 NIRWFEEPVEWHND 232
>pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|B Chain B, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|C Chain C, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|D Chain D, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|E Chain E, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|F Chain F, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
Length = 398
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E G +K KV + +DA I R+ G + +DAN+ + A++ I D
Sbjct: 179 ELGLAGVKFKVGGLS-AAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADL 237
Query: 728 DLQYIEEPVQNEED 741
++++ EEPV+ D
Sbjct: 238 NIRWFEEPVEWHND 251
>pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate
Cycloisomerase
Length = 370
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 602 SVRCGLEMAILNAIAVKHGSSFLNILY-PLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
S + +EMA+L+ A G S +L PL ++I I + S + ++
Sbjct: 99 SAKAAVEMALLDLKARALGVSIAELLGGPL----------RSAIPIAWTLASGDTKRDLD 148
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
S + K+K+ R+ P D ++ + +G + LRVD N+ W Q A +
Sbjct: 149 SAVEMIERRRHNRFKVKLGFRS-PQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVY 207
Query: 721 GFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETI 759
++ ++ IE+PV +N + + + + + + + DE++
Sbjct: 208 IPELEALGVELIEQPVGRENTQALRRLSDNNRVAIMADESL 248
>pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase,
Target Efi- 502095) From Streptomyces Coelicolor, No Mg,
Ordered Loop
Length = 398
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 656 PVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P +A A +VEE GF A+KLK D D +++ VR+ + + LRVD N W+
Sbjct: 169 PKAMAEHAVRVVEEGGFDAVKLK--GTTDCAGDVAILRAVREAL-PGVNLRVDPNAAWSV 225
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQ 763
+++ G +++ DL+Y+E+P E + + + +P+ + + +F+
Sbjct: 226 PDSVRAGIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFE 274
>pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RO6|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|F Chain F, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
Length = 356
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
GF +K+K+ D +D E ++ + + + R +RVD N+++ L L+++ +
Sbjct: 155 GFRVLKVKLC--GDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI 212
Query: 730 QYIEEP 735
++IE+P
Sbjct: 213 EFIEQP 218
>pdb|4DX3|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502086) From Agrobacterium
Tumefaciens, With A Succinimide Residue
pdb|4DXK|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502086) From Agrobacterium
Tumefaciens, With A Succinimide Residue, Na And
Phosphate
Length = 400
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 24/158 (15%)
Query: 662 IATTLVEEGFTAIKL------------KVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+A +L+E+G TA+K+ + D E +++RK VG ++++ V+ +
Sbjct: 159 LAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFH 218
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQNE--EDIIKYCEESGLPVALDETIDK---FQK 764
W A++ + + E+P++ + + +Y S P++ ET+ F+
Sbjct: 219 SMWQLLPAMQIAKALTPYQTFWHEDPIKMDSLSSLTRYAAVSPAPISASETLGSRWAFR- 277
Query: 765 DPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQ 802
++LE A G+V + I S GG A IA A+
Sbjct: 278 ---DLLETGA-AGVVMLDI--SWCGGLSEARKIASMAE 309
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 660 ASIATTLVEEGFTAIKLKVARRADPIKD---AEVIQEVRKKVGHRIELRVDANRNWTYQE 716
+A + GF A K A P+ D A I +R+ +G + ++ D + N T +
Sbjct: 189 GELAKYWQDRGFNAFKF-----ATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPER 243
Query: 717 ALEFGFLIKDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774
ALE ++ D + E PV E+ + K + + +P+A+ E + D +E+
Sbjct: 244 ALELIAEMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEW-RTHWDMRARIERCR 302
Query: 775 HPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLEL 832
+AIV G N I A HG + A +G+ L+A + SS L +
Sbjct: 303 ----IAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTLSM 356
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 668 EEGFTAIKLKVARRADPIKD---AEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724
+ GF A K A P+ D A I +R+ +G + ++ D + N T + ALE +
Sbjct: 177 DRGFNAFKF-----ATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEM 231
Query: 725 KDCDLQYIEEPVQNEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782
+ D + E PV E+ + K + + +P+A+ E + D +E+ +AIV
Sbjct: 232 QPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEW-RTHWDMRARIERCR----IAIV 286
Query: 783 IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLEL 832
G N I A HG + A +G+ L+A + SS L +
Sbjct: 287 QPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASSTLSM 336
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK A + ++ ++ RI L D N W+
Sbjct: 184 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITL--DPNGAWS 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALD 756
EA++ G +K L Y E+P E E + ++ +GLP A +
Sbjct: 242 LNEAIKIGKYLKGS-LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 289
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK A + ++ ++ RI L D N W+
Sbjct: 184 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITL--DPNGAWS 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALD 756
EA++ G +K L Y E+P E E + ++ +GLP A +
Sbjct: 242 LNEAIKIGKYLKGS-LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 289
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK A + ++ ++ RI L D N W+
Sbjct: 184 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITL--DPNGAWS 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALD 756
EA++ G +K L Y E+P E E + ++ +GLP A +
Sbjct: 242 LNEAIKIGKYLKGS-LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 289
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK A + ++ ++ RI L D N W+
Sbjct: 184 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITL--DPNGAWS 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALD 756
EA++ G +K L Y E+P E E + ++ +GLP A +
Sbjct: 242 LNEAIKIGKYLKGS-LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 289
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+P V +A E+ GF KLK A + ++ ++ RI L D N W+
Sbjct: 184 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITL--DPNGAWS 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALD 756
EA++ G +K L Y E+P E E + ++ +GLP A +
Sbjct: 242 LNEAIKIGKYLKGS-LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATN 289
>pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|B Chain B, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|C Chain C, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|D Chain D, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
Length = 385
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 656 PVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
P A A +VEE GF A+KLK D D +++ VR+ + + LRVD N W+
Sbjct: 148 PKAXAEHAVRVVEEGGFDAVKLK--GTTDCAGDVAILRAVREAL-PGVNLRVDPNAAWSV 204
Query: 715 QEALEFGF 722
+++ G
Sbjct: 205 PDSVRAGI 212
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++LFLHG + W I+ VS A CI+ DL G G S
Sbjct: 31 VVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS 69
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++LFLHG + W I+ VS A CI+ DL G G S
Sbjct: 31 VVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS 69
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++LFLHG + W I+ VS A CI+ DL G G S
Sbjct: 31 VVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS 69
>pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp
Length = 381
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEED--IIKYCEESGLPVALDETID 760
++RVD N+ + AL + +IE+PV+ + + + +P+ DE+I
Sbjct: 194 DIRVDYNQGLHHDVALARVRDVATFKPTFIEQPVKAHLRGLMARIRDAVDVPLLADESI- 252
Query: 761 KFQKDPLNMLEKYAHPGIV-AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
P +M E HP I + IK GG A +AR A G A FE+GL
Sbjct: 253 ---FGPEDMAE---HPEIADGVSIKIMKSGGLTRAQTVARMAAARGLSAYGGDMFEAGL 305
>pdb|3MQT|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|E Chain E, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|F Chain F, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|G Chain G, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|H Chain H, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|I Chain I, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|J Chain J, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|K Chain K, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|L Chain L, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|M Chain M, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|N Chain N, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|O Chain O, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|P Chain P, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|Q Chain Q, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|R Chain R, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|S Chain S, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|T Chain T, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|U Chain U, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|V Chain V, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|W Chain W, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|X Chain X, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
Length = 394
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 668 EEGFTAIKLKVARRADPIKDAEVI---QEVRKKVGHRIELRVDANRNWTYQEALEFGFL- 723
E G A+K+ + D + D E++ +E+R+ +G +++ VD WT + + F
Sbjct: 165 ERGAKAVKVCIIPN-DKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQ 223
Query: 724 IKDCDLQYIEEPVQNEE 740
++D DL +IE +Q+++
Sbjct: 224 LEDIDLYFIEACLQHDD 240
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 69
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 69
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 927 VQEIGQRIDIQD------NILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
V+ +G+R+ D +LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 937 QDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
Q +++ +HGF T EW +M ++ I+ DLPG G S+
Sbjct: 29 QGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSE 71
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 937 QDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
Q +++ +HGF T EW +M ++ I+ DLPG G S+
Sbjct: 29 QGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSE 71
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 937 QDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
Q +++ +HGF T EW +M ++ I+ DLPG G S+
Sbjct: 29 QGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSE 71
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 34/143 (23%)
Query: 265 LSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASG 324
L + L S + N +R LD Y R TV + + NS Q AG R
Sbjct: 247 LCKLLESAGIAYTVNQRLVRGLDYYNR-------TVFEWVTNS-LGSQGTVCAGGR---- 294
Query: 325 IDGLL-------STAIGFAVGCNKHVLCV-----------VGDISFL---HDTNGLAI-L 362
DGL+ + A+GFA+G + VL V V DI + DT A+ L
Sbjct: 295 YDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMAL 354
Query: 363 KQRMKRKPILMLVINNHGGAIFS 385
+R++ + + ++ NHGG F
Sbjct: 355 AERLRDELPGVKLMTNHGGGNFK 377
>pdb|3DIP|A Chain A, Crystal Structure Of An Enolase Protein From The
Environmental Genome Shotgun Sequencing Of The Sargasso
Sea
pdb|3DIP|B Chain B, Crystal Structure Of An Enolase Protein From The
Environmental Genome Shotgun Sequencing Of The Sargasso
Sea
Length = 410
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 662 IATTLVEEGFTAIKLKVARRADPI----------KDA-EVIQEVRKKVGHRIELRVDANR 710
+A +LV EG+ A+K+ I KD E +++R VG RIE+ + +
Sbjct: 163 LAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHS 222
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNEEDI 742
W A + D + ++E+P+ ++I
Sbjct: 223 LWGTHAAARICNALADYGVLWVEDPIAKMDNI 254
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 34/143 (23%)
Query: 265 LSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASG 324
L + L S + N +R LD Y R TV + + NS Q AG R
Sbjct: 239 LCKLLESAGIAYTVNQRLVRGLDYYNR-------TVFEWVTNS-LGSQGTVCAGGR---- 286
Query: 325 IDGLL-------STAIGFAVGCNKHVLCV-----------VGDISFL---HDTNGLAI-L 362
DGL+ + A+GFA+G + VL V V DI + DT A+ L
Sbjct: 287 YDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMAL 346
Query: 363 KQRMKRKPILMLVINNHGGAIFS 385
+R++ + + ++ NHGG F
Sbjct: 347 AERLRDELPGVKLMTNHGGGNFK 369
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 34/143 (23%)
Query: 265 LSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASG 324
L + L S + N +R LD Y R TV + + NS Q AG R
Sbjct: 240 LCKLLESAGIAYTVNQRLVRGLDYYNR-------TVFEWVTNS-LGSQGTVCAGGR---- 287
Query: 325 IDGLL-------STAIGFAVGCNKHVLCV-----------VGDISFL---HDTNGLAI-L 362
DGL+ + A+GFA+G + VL V V DI + DT A+ L
Sbjct: 288 YDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLVASGADTQSAAMAL 347
Query: 363 KQRMKRKPILMLVINNHGGAIFS 385
+R++ + + ++ NHGG F
Sbjct: 348 AERLRDELPGVKLMTNHGGGNFK 370
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980
LL LHGF T W + ++ + I DLPG+G S M
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDM 75
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980
LL LHGF T W + ++ + I DLPG+G S M
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDM 75
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980
LL LHGF T W + ++ + I DLPG+G S M
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDM 75
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980
LL LHGF T W + ++ + I DLPG+G S M
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDM 75
>pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
pdb|3S5S|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
Length = 389
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 82/220 (37%), Gaps = 33/220 (15%)
Query: 528 FILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGAKISYFLPLLKGSFSS 586
++++ L DG++G+GE APL D L + G+ + + + +
Sbjct: 36 LLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDARAWRAVARALREA 95
Query: 587 WIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPL-TEIDEEISKRSTSIK 645
+ RC +E AIL+A+ + G PL + +T I
Sbjct: 96 SGGGAG---------AARCAIETAILDALTKRAG-------MPLWAFFGGSGTALTTDIT 139
Query: 646 ICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR---ADPIKDAEVIQEVRKKVGHRI 702
I + SP A GF A+K+KV R +DP + E I
Sbjct: 140 I-----TTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPAR-IEAIHAAAPGA---- 189
Query: 703 ELRVDANRNWTYQEALEFGFLIK--DCDLQYIEEPVQNEE 740
L +D N T EAL + D+ +E+PV ++
Sbjct: 190 SLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDD 229
>pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
pdb|1DJ0|B Chain B, The Crystal Structure Of E. Coli Pseudouridine Synthase I
At 1.5 Angstrom Resolution
Length = 264
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 27 FREPLDNSPKHWMSSCLKGLDIWTS----SIEPFTKYIQVQHSHACKSYTYCQM-----A 77
F EPLD H + CL G + +TS + T + V H + + Y + A
Sbjct: 133 FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANA 192
Query: 78 EVLELVQGVNKGLLLVGAVHNEDEIW 103
V +V+ + L+ VGA HN+ E W
Sbjct: 193 FVHHMVRNIVGSLMEVGA-HNQPESW 217
>pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NQP|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|B Chain B, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|C Chain C, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NR0|D Chain D, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
pdb|2NRE|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In
Complex With Leucyl Trna
Length = 270
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 27 FREPLDNSPKHWMSSCLKGLDIWTS----SIEPFTKYIQVQHSHACKSYTYCQM-----A 77
F EPLD H + CL G + +TS + T + V H + + Y + A
Sbjct: 139 FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANA 198
Query: 78 EVLELVQGVNKGLLLVGAVHNEDEIW 103
V +V+ + L+ VGA HN+ E W
Sbjct: 199 FVHHMVRNIVGSLMEVGA-HNQPESW 223
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 93 VGA--VHNEDEIWAVLHLARHIRWPVVADILSG-------LRLRKLLASFLETEQNILFL 143
VGA V+N ++I ++ ++ PV+ G + L+KL + LE +I
Sbjct: 20 VGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPIC 79
Query: 144 DHLDHALLSESVKDWIQF 161
HLDH ESVK I
Sbjct: 80 IHLDHGDTLESVKMAIDL 97
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 93 VGA--VHNEDEIWAVLHLARHIRWPVVADILSG-------LRLRKLLASFLETEQNILFL 143
VGA V+N ++I ++ ++ PV+ G + L+KL + LE +I
Sbjct: 20 VGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPIC 79
Query: 144 DHLDHALLSESVKDWIQF 161
HLDH ESVK I
Sbjct: 80 IHLDHGDTLESVKMAIDL 97
>pdb|3T6C|A Chain A, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
pdb|3T6C|B Chain B, Crystal Structure Of An Enolase From Pantoea Ananatis (Efi
Target Efi- 501676) With Bound D-Gluconate And Mg
Length = 440
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCE 747
+ +R K+G +EL DA+ T A+ ++ L ++E+PV +N E + +
Sbjct: 229 LFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQ 288
Query: 748 ESGLPVALDET-IDKFQKDPL--NMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRH 804
+S P+A+ E ++ + PL N L Y I S IGG A IA +++ +
Sbjct: 289 QSSTPIAMGELFVNVNEWKPLIDNKLIDY-------IRCHISSIGGITPAKKIAIYSELN 341
Query: 805 G-KMAVVSAAFESGLGLSAYI---IFSSYLELQNAYLCKVMNREL---CPPVAQG 852
G + A S S +G+ A + + S +Q RE+ CP V QG
Sbjct: 342 GVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQG 396
>pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase
Length = 324
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+P ++A+ A+TL + G +K+K+ D +E + +R V L VDAN +W
Sbjct: 132 TPDQMANSASTLWQAGAKLLKVKL----DNHLISERMVAIRTAVPDAT-LIVDANESWRA 186
Query: 715 QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDET 758
+ L+ D + +E+P+ ++D LP+ DE+
Sbjct: 187 EGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADES 230
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+N ++FLHG + W ++ + ARCI DL G G S
Sbjct: 43 ENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 83
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+N ++FLHG + W ++ + ARCI DL G G S
Sbjct: 44 ENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 84
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+N ++FLHG + W ++ + ARCI DL G G S
Sbjct: 44 ENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 84
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+N ++FLHG + W ++ + ARCI DL G G S
Sbjct: 43 ENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,481,686
Number of Sequences: 62578
Number of extensions: 1156299
Number of successful extensions: 2909
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2733
Number of HSP's gapped (non-prelim): 180
length of query: 983
length of database: 14,973,337
effective HSP length: 108
effective length of query: 875
effective length of database: 8,214,913
effective search space: 7188048875
effective search space used: 7188048875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)