BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041113
(983 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15KI9|PHYLO_ARATH Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2
SV=2
Length = 1715
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/983 (60%), Positives = 757/983 (77%), Gaps = 9/983 (0%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
M+LTT+DSA+HWAT S GPVH+NCPFR+PLD SP +W S+CL GLD+W S+ EPFTKY
Sbjct: 503 MVLTTVDSALHWATGSACGPVHLNCPFRDPLDGSPTNWSSNCLNGLDMWMSNAEPFTKYF 562
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
QVQ SH T Q+ E+L++++ KGLLL+GA+H EDEIWA L LA+ + WPVVAD+
Sbjct: 563 QVQ-SHKSDGVTTGQITEILQVIKEAKKGLLLIGAIHTEDEIWASLLLAKELMWPVVADV 621
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSG+RLRKL F+E ++ F+DHLDHAL S+SV++ I+FDV+IQ+GSRITSKR+SQM+
Sbjct: 622 LSGVRLRKLFKPFVEKLTHV-FVDHLDHALFSDSVRNLIEFDVVIQVGSRITSKRVSQML 680
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E+CFP YILVD HPCRHDPSH VTHR+QS IVQF + +LK + P R SK L+ALD
Sbjct: 681 EKCFPFAYILVDKHPCRHDPSHLVTHRVQSNIVQFANCVLKSRFPWRRSKLHGHLQALDG 740
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+A E+SFQI A+ SLTEP+VAH LS+ALTS SALF+GNSM IRD+DMYG + +H V
Sbjct: 741 AIAREMSFQISAESSLTEPYVAHMLSKALTSKSALFIGNSMPIRDVDMYGCSSENSSHVV 800
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
D+ML++E P QWI+V GNRGASGIDGLLS+A GFAVGC K V+CVVGDISFLHDTNGLA
Sbjct: 801 -DMMLSAELPCQWIQVTGNRGASGIDGLLSSATGFAVGCKKRVVCVVGDISFLHDTNGLA 859
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
ILKQR+ RKP+ +LVINN GG IF LLPIA +TEP +L+QYFYT H+ISI+NLCLAHG+
Sbjct: 860 ILKQRIARKPMTILVINNRGGGIFRLLPIAKKTEPSVLNQYFYTAHDISIENLCLAHGVR 919
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQF 480
+V V TK ELE+AL + D ++EVES I+ANA HS L +FARQ+A+++L ++S
Sbjct: 920 YVHVGTKSELEDALFVPSVEEMDCIVEVESSINANAIVHSTLERFARQAAENSLGIVSAS 979
Query: 481 SVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVG 540
S + ++ +C++ ++YS YR++LC PT S+F REGFILSL LEDGS+G
Sbjct: 980 SFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPT--ICSDEFSQFHREGFILSLTLEDGSIG 1037
Query: 541 YGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF 600
YGEVAPL + ENL+D E QL+ +LH M AK SY LPLL GS SSWIWS LGI A IF
Sbjct: 1038 YGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIWSELGITASSIF 1097
Query: 601 PSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVA 660
PSVRCGLEMA+LNA+AV+H SS L IL+ + +E S + S++ICAL+DS +P+EVA
Sbjct: 1098 PSVRCGLEMALLNAMAVRHDSSLLGILH--YQKEENGSAQPHSVQICALLDSEGTPLEVA 1155
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+A LV+EGF+AIKLKV RR ++DA V+QEVR+ VG +IELR DAN WT++EA EF
Sbjct: 1156 YVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIELRADANCRWTFEEAREF 1215
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G L+ C+L+YIEEPVQN++D+I++ EE+GLPVALDET+D F++ PL ML KY HPGIVA
Sbjct: 1216 GLLVNSCNLKYIEEPVQNKDDLIRFHEETGLPVALDETLDDFEECPLRMLTKYTHPGIVA 1275
Query: 781 IVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKV 840
+VIKPSV+GGFENA LIARWAQ+HGKMAV+SAA+ESGLGLSAYI+F+SYLE++N
Sbjct: 1276 VVIKPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYILFASYLEMENVKASTE 1335
Query: 841 MNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVI 900
+ P VA GLGTY+WL EDV + + I + GFVE +A A+ L++++INNDVI
Sbjct: 1336 QKQGTPPSVAHGLGTYRWLSEDVMMNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVI 1395
Query: 901 CKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKA 960
+TS V RY+L V+ F FI+V ++G+ + + ++ LFLHGFLGTGEEWIPIM
Sbjct: 1396 VRTSKGIPVRRYELRVDVDGFSHFIRVHDVGE--NAEGSVALFLHGFLGTGEEWIPIMTG 1453
Query: 961 VSGSARCISIDLPGHGGSKMQNH 983
+SGSARCIS+D+PGHG S++Q+H
Sbjct: 1454 ISGSARCISVDIPGHGRSRVQSH 1476
>sp|B4S4J4|MEND_PROA2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Prosthecochloris aestuarii (strain DSM 271 /
SK 413) GN=menD PE=3 SV=1
Length = 578
Score = 219 bits (559), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 226/463 (48%), Gaps = 44/463 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
IL+ +D AV T++P GPVH+N FREPL+ P + S L L W SS P+++ +Q
Sbjct: 148 ILSAIDYAVSTCTANPSGPVHLNIAFREPLEPVPLNENSPWLSSLGKWNSSRAPWSRTLQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
Q S S + EV L+ L++ G + + AVL+L++ + + ADI
Sbjct: 208 RQSSPESAS-----VKEVARLLASAENPLIIAGHLDRPADAQAVLNLSKSLNIALYADIS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S LRL K + L A LS+ + + D+++ G + K+ Q ++
Sbjct: 263 SQLRLHKETVA-------------LQQAWLSDKYVEQHRADLVLHFGGSLVGKKPGQAMK 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
P I++ NHP R+ P H+VT I++++ F + L K P K + + ++
Sbjct: 310 TWRPDHTIVIKNHPDRYAPDHTVTMSIEASVKAFAEALAKTSQPQ--GKKANPIDEIEQ- 366
Query: 242 VASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVA 301
EI D +TE A +SR + LF+ NSM +RD+DMY T T+
Sbjct: 367 ---EIERFTRPDSPVTEISAARIVSRLIDPGHGLFLANSMPVRDMDMYA---TRSGGTI- 419
Query: 302 DIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAI 361
I A NRGASGIDG++S+A GFA G + V ++GDISFLHD N L +
Sbjct: 420 ------------IPTAMNRGASGIDGIISSAAGFASGLERPVTLLIGDISFLHDMNALCL 467
Query: 362 LKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNH 421
L R P+ ++VINN+GG IFS LPI+D +P + ++ F T +I A + +
Sbjct: 468 L--RSMTVPLTIVVINNNGGGIFSFLPISD--QPDVFEKNFGTPQEFNIAAAATAFSIEY 523
Query: 422 VQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464
+ E+ ++ +IE+ S D N H L +
Sbjct: 524 QCPPSNAAFSESYMAARSSAETSIIEIRSRRDENLALHRKLNQ 566
>sp|B3QL00|MEND_CHLP8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=menD PE=3 SV=1
Length = 583
Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 224/463 (48%), Gaps = 43/463 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+T+ AV + SP GPVH+N PFREPL+ ++ L W +S +P+ ++ Q
Sbjct: 148 LLSTVGQAVKRSLGSPAGPVHLNLPFREPLEPESHDLAHPWVEPLRNWLASEQPWCRFEQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ + + T Q +++ + L + G++ D+ AV LA + + AD+
Sbjct: 208 PRTAPDANALTALQ-----QILANAERPLFVAGSMDKADDAEAVASLADSLGILLFADLT 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL + QN E+ + DV+I G + K+ + +
Sbjct: 263 SGLRLTNKCTPWQLAFQN-------------ETFATSFKPDVVIHFGGALIGKQPAMTLR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
+ P Y++V NHP R +P H+VT I+++ V L + + P + AL
Sbjct: 310 KEPPFHYVVVRNHPGRFNPDHNVTLSIEASPAAVVSALSECRKPAEMGGFA----ALFSE 365
Query: 242 VASEISFQICA-DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
VA I CA D + E +S ALFV NSM RD+D+Y
Sbjct: 366 VAHTIDTAACAPDEPVNEISAPRIVSSLTDGKHALFVANSMPARDMDLY----------A 415
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A + SE P +RV NRG SGIDG++STA GF+ G +K ++GDISFLHD N L+
Sbjct: 416 APV---SEKP---LRVELNRGVSGIDGIISTAAGFSAGLDKPTTLLIGDISFLHDLNALS 469
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L P++++V+NN+GG IFS LPIA +T+ LD+ F T N SI++ L+
Sbjct: 470 LLDN--PTNPLIVIVLNNNGGGIFSFLPIASQTD--RLDECFATPQNFSIESAARTFDLD 525
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
+ + E E + + VIE+ S AN H L+
Sbjct: 526 YASPASNREFTELYADALKRNKSLVIEIRSNRQANLLLHRTLK 568
>sp|Q8KBE8|MEND_CHLTE 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobium tepidum (strain ATCC 49652 / DSM
12025 / TLS) GN=menD PE=3 SV=2
Length = 582
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 226/466 (48%), Gaps = 49/466 (10%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDN---SPKH-WMSSCLKGLDIWTSSIEPFT 57
+L+T+D AV + S P GPVH+N PFREPL+ P H W + L+ W +S EP++
Sbjct: 148 LLSTVDHAVRKSLSLPAGPVHLNLPFREPLEPEAPDPGHPWAAP----LETWQASGEPWS 203
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ + H + +S + + EL+ + L + G++ N + AV LA + P+
Sbjct: 204 RFARPLHEPSAES-----IVTLRELLAQAERPLFVAGSMSNAADGEAVAALAESLGVPLF 258
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
AD+ SG+RL + QN F++ Q DV+I G + K+ +
Sbjct: 259 ADLTSGIRLSSDCTPWQLAFQNEAFVERF-------------QPDVVIHFGGHVIGKQPA 305
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
+ + P Y++V HP R DP H+VT ++++ L + P + A
Sbjct: 306 MALRKQPPLHYVVVREHPGRFDPDHNVTLTLEASPAAVASALEGCREPVPGIRCRDAFSA 365
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
++ A ++ P + L+ ALFV NSM RD+D+Y
Sbjct: 366 ASGIIDKMACVPELAVSEISAPRIVSSLA---GDGHALFVANSMPARDMDLYA------- 415
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
+ + ++VA NRG SGIDG++STA GF+ G K ++GDISFLHD N
Sbjct: 416 ---------APVAQKPLQVALNRGVSGIDGIISTAAGFSAGLGKPTTLLIGDISFLHDLN 466
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
L +L P++++V+NNHGG+IFS LPIA +T+ LD+ F T N SI++
Sbjct: 467 ALCLLNHPW--NPLIVIVLNNHGGSIFSFLPIASQTD--RLDECFATPQNFSIESAARTF 522
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
G+++ +T + + + + +IE+ S + N H L+
Sbjct: 523 GIDYACPETNGDFTQLYAEALTTKKSLIIEIRSDREKNLLLHRSLK 568
>sp|Q2S2V6|MEND_SALRD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Salinibacter ruber (strain DSM 13855 / M31)
GN=menD PE=3 SV=1
Length = 591
Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 214/462 (46%), Gaps = 38/462 (8%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+LTT D A+H +P GPVH+NC FR+PL+ + +D W EP+T Y
Sbjct: 156 VLTTADQALHQTLRAPAGPVHVNCMFRKPLEPVETEASVAVPTAVDAWARGTEPYTHYPT 215
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
S ++ + E V+G GL++ G + + A LA H+ WP++ D+
Sbjct: 216 P-----APSPPGPEVDALAETVRGTEHGLVVAGRLDSAAAADATRRLATHLGWPLIPDLT 270
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S RLR+ E + + + D + L S + ++ ++Q+G R SKR+ +
Sbjct: 271 S--RLRR---GGREQPEQVPYGDLV---LTSAAFREGHPPRAVLQVGGRFASKRLRLFLR 322
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLL-KVQVPHRSSKWCSFLRALDM 240
+ P + +V P R DP H VTH +++ + VD L+ +++ R + W
Sbjct: 323 DSAPEVWAVVRPDPSRIDPDHRVTHHVEAAVPAAVDALVARLEEGPRGTTWRDDWAGASE 382
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
V + + + +LT+P VA L+ + S AL +SM +RDL+ + T
Sbjct: 383 RVGAVVQAHVQESDALTDPLVAALLTEEMPSEHALVAASSMPVRDLNRHAAPGGTGGPAF 442
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
A NRGASGIDG ++TA G A G + V ++GD++ HD NGLA
Sbjct: 443 A-----------------NRGASGIDGTVATAAGIAEGRDGPVTLLIGDLALQHDLNGLA 485
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L+ R P++ +V+NN GG IF LPI E D YF T H ++ L
Sbjct: 486 LLQDR----PVVAIVVNNDGGGIFHFLPIRKHDE---FDPYFTTPHGHDFEHAAALFDLP 538
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
+ + + L A + + G +IEV + N H L
Sbjct: 539 YHRPDSPSALRSAYAQACRSGESALIEVRTDRATNRQVHDRL 580
>sp|Q3B612|MEND_PELLD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Pelodictyon luteolum (strain DSM 273)
GN=menD PE=3 SV=1
Length = 583
Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 137/468 (29%), Positives = 227/468 (48%), Gaps = 52/468 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+T++ AV + +P GPVH+N PFREP D P L+ L W P T Q
Sbjct: 148 LLSTVEHAVAKSLGAPRGPVHLNQPFREPFDPEPLEGQDPWLEPLQAWKLDGRPRTSSAQ 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ ++ MA + EL+ + LL+ G++ + D+ AV LA +R P+ AD+
Sbjct: 208 PERRPDARA-----MATIRELLATARRPLLIAGSIPSPDDARAVASLADDLRIPLYADLS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL TE + + A + + + D+++ G R+ ++ S ++
Sbjct: 263 SGLRL---------TEGTLAW----QQAFATPAFLGRFRPDLVVHFGGRLIARHPSAALK 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS---FLR-- 236
P Y+++ HP R+ P H V+ ++S++ + L+ + + K + FL
Sbjct: 310 AWKPAHYVVIREHPERYAPDHPVSLSLESSLQTAAEGLMGCRSEPSAIKEPAEGFFLHCS 369
Query: 237 -ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
ALD + + I L+E A ++S+ +T ALF NSM++R+LD +
Sbjct: 370 GALDDLTEASIP--------LSEISAARQISQLITPGEALFTSNSMSVRELDSF------ 415
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
A + P NRGASGIDG++STA G+ G + V ++GDI+FLHD
Sbjct: 416 -----AAALQPDGLP-----CGLNRGASGIDGIISTAAGYGEGLGRKVTLLIGDIAFLHD 465
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL 415
N L++L R +P+ ++++NN+GG IFS LP+A + I +++F T + Q+
Sbjct: 466 LNALSLL--RSLSRPMRIVLLNNNGGGIFSFLPVASCND--IFEEHFATPQHFHAQHAAG 521
Query: 416 AHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
GL + +T E EE + +IE+ S N H L+
Sbjct: 522 MFGLRYAAPRTNREFEECFLAAGEAPQSTIIEIASSRSENVEQHRTLQ 569
>sp|A1BI74|MEND_CHLPD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobium phaeobacteroides (strain DSM 266)
GN=menD PE=3 SV=1
Length = 587
Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 147/483 (30%), Positives = 229/483 (47%), Gaps = 54/483 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+ +D AV AT +P GPVH+N PFREP + L + W S EP +
Sbjct: 148 VLSAIDHAVEKATGNPPGPVHLNVPFREPFEPELSDLKDPWLAPVAHWIDSAEPLRRC-- 205
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
SHA + + EL++ + L + G + + ++ AV LA + P+ AD+
Sbjct: 206 ---SHAENVPHPAVIEKTAELIKASRQPLFIAGKLDSREDAIAVGLLAGSLGIPLYADLS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLR + Q+ FL+H + D+++ G ++ S+ I
Sbjct: 263 SGLRYSTHCKPWQLAFQSPAFLEHY-------------RPDMVVHFGGQLISRHPGAAIR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLK----VQVPHRSSKWCSFLRA 237
P Y++V R+ P H+VT I+++ F D LL+ V +P W +
Sbjct: 310 VSHPGNYLVVKPSANRYAPDHNVTLSIEASPKLFADALLRDLQNVSLP----AWKGPVAD 365
Query: 238 LDMMVASEISFQICAD-YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
+ E C D ++E VA +SR + LF+ NSM +RD+D++ T
Sbjct: 366 EFFTFSEEEIEHYCEDDRPVSEISVARIVSRLTGEHDGLFMSNSMPVRDMDLFAAA-TRQ 424
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDT 356
T T++ +A NRGASGIDG+LSTA GFA G K V V+GDI+FLHD
Sbjct: 425 TPTIS--------------IAMNRGASGIDGILSTAAGFAEGLQKPVTLVIGDIAFLHDL 470
Query: 357 NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416
N L++L+ P+ ++V+NN+GG IFS LPIA E + + +F T + SI +
Sbjct: 471 NALSLLES--SSVPLRIIVVNNNGGGIFSFLPIA--AEKDVFETHFATPQHYSIASAAAT 526
Query: 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNV 476
G+ H KT E + + + VIE+ + N + H L+ HT+N+
Sbjct: 527 FGVAHASPKTNREFADTCTEAFESNESIVIEITGSREDNVSAHRSLQ--------HTINM 578
Query: 477 LSQ 479
L++
Sbjct: 579 LAR 581
>sp|Q3APX4|MEND_CHLCH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobium chlorochromatii (strain CaD3)
GN=menD PE=3 SV=1
Length = 583
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 222/472 (47%), Gaps = 61/472 (12%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLD------NSPKHWMSSCLKGLDIWTSSIEP 55
+L+T++ AV A ++P G VH+N PFREP + N+ W S+ W +S
Sbjct: 148 LLSTVEYAVAKALNTPAGVVHLNQPFREPFEPESVAANNHAWWQSA-----QQWLAS--- 199
Query: 56 FTKYIQVQHSHACKSYTYCQMAEVLELVQGVNKG---LLLVGAVHNEDEIWAVLHLARHI 112
+ H+ + A + L Q + LL+ G++ +D+ AV LA ++
Sbjct: 200 -----KAAHTTTTVEKKHPNNASITLLRQHLTTAKQPLLIAGSMRCKDDAEAVAALANNL 254
Query: 113 RWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRIT 172
+ P+ AD SGLR++ L L + S + + DV++ G +
Sbjct: 255 KIPLYADFSSGLRMKSNLPP-------------LQLLMQSPAWRAAFHPDVVLHFGGNVV 301
Query: 173 SKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH--RSSK 230
+K ++ + E P Y++V P R P H+VTHR++++I L + R S+
Sbjct: 302 AKHLATALREWQPAHYMVVREEPMRFSPDHNVTHRLEASIAATAHALHNSRSTPLWRESE 361
Query: 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYG 290
F A E+ + AD +TE A +SR + + ALFV NSMA+RD+DMY
Sbjct: 362 ADHFF----AQAAQELEGDVVADQPITEISAARLISRHIGTEQALFVSNSMAVRDMDMYA 417
Query: 291 RNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDI 350
+ I A NRGASGIDG+LSTA GFA G K ++GDI
Sbjct: 418 ----------------ASLHEAGIPTAINRGASGIDGILSTAAGFACGHGKSTTLLIGDI 461
Query: 351 SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISI 410
+FLHD N L++L P+ ++++NN+GG IFS LPIA + + + YF T + SI
Sbjct: 462 AFLHDLNALSLLGSLT--VPLQIVLLNNNGGGIFSFLPIAACDD--LFETYFATPQHYSI 517
Query: 411 QNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
GL++ T E A +Q +IEV+S N H +L
Sbjct: 518 PLAAETFGLHYANPTTNSEFVAAYHQAQQSPQSTIIEVKSSRTNNLQHHRLL 569
>sp|B3EMZ5|MEND_CHLPB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobium phaeobacteroides (strain BS1)
GN=menD PE=3 SV=1
Length = 581
Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 145/475 (30%), Positives = 226/475 (47%), Gaps = 47/475 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLD----NSPKHWMSSCLKGLDIWTSSIEPFT 57
+L+T+D AV + SP GPVH+N PFREP D + PK +S L +W + EP
Sbjct: 148 LLSTIDYAVGRSLGSPPGPVHLNIPFREPFDPVNLSGPKPREAS----LTLWKQNNEPLN 203
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ + + K + L++ + L++ G + + + A+ LA + P+
Sbjct: 204 RF-----ALSRKIADRAVVDRTKALLKNASSPLIVAGQLDSRTDAEAIGSLAETLDIPLY 258
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
ADI S LR+ A L LLS+ D+I+ G +I K+++
Sbjct: 259 ADISSQLRMNDTHAP-------------LQPLLLSKRFTASFNPDLILHFGGKIVGKQLA 305
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
I+ P +I+++N R++P H+VT +I++ +F L+ + RS K L+A
Sbjct: 306 ITIKNRAPEHFIVINNSSRRYNPDHNVTLQIEAEPGEFAKLLVPEK--SRSGKHERSLKA 363
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
L + E+ + LTE A LS + + LF+ NSM IRD+D Y
Sbjct: 364 LSDEIEKELDNYCASGKPLTEISTARILSGMIPESHGLFIANSMPIRDMDTY-------- 415
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
A + N P A NRGASGIDG ++TA G A G V ++GDISFLHD N
Sbjct: 416 ---AALRKNGSAP----LCAMNRGASGIDGNIATAAGLAQGLGTPVTLLIGDISFLHDLN 468
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
L +L Q M+ +P+ ++V+NN+GG IFS LP+A TE I + F T N SI+
Sbjct: 469 SLTLL-QGME-QPLHIVVVNNNGGGIFSFLPVA--TEKDIFETNFGTPQNYSIRAAAETF 524
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADH 472
G+++ + + + + +IEV + N H + K R D
Sbjct: 525 GISYNSPSSPESFKASYADLSRSAVSGIIEVNGSREENLAEHRRVNKQLRNIIDR 579
>sp|Q1AS21|MEND_RUBXD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Rubrobacter xylanophilus (strain DSM 9941 /
NBRC 16129) GN=menD PE=3 SV=1
Length = 574
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 217/470 (46%), Gaps = 52/470 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGL-DIWTSSIEPFTKYI 60
+LTT+D AV+ + P GPVH+N FREP P GL D+W P+T+Y
Sbjct: 150 VLTTVDQAVYRSQRPPAGPVHLNLMFREPFLPQPAQ-----PDGLPDLWPGD-GPYTRY- 202
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVN---KGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
++ AEV EL + +G+++ G + + + A LA + WP++
Sbjct: 203 -------ARAAPVPDEAEVRELASALGAAERGVVVAGRLRSRKQGEAAARLAAALGWPLL 255
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
DI S RL E + + D L L D ++++G SKR+
Sbjct: 256 PDICSQARLGA------RPEVSAPYHDLL---LAGGRFPGGRAPDAVVRVGGVPVSKRLQ 306
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS-FLR 236
+ + P TY +V +HP R DP H THR+++ + + L + W S +LR
Sbjct: 307 RYVTGRKPATYAVVADHPFRSDPEHLATHRLEADVAELCAALAGRVRRAAAPGWLSGWLR 366
Query: 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
A + + L+EP VA +SR + + AL +SM +RDLD +
Sbjct: 367 A-SGEAGRRLEAALRERKGLSEPGVARLVSRLIPEDHALVAASSMPVRDLDTFA------ 419
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDT 356
+ E P + VA NRGASGIDG ++TA GFA G + V ++GD++ LHD
Sbjct: 420 ---------DPEGPP--VPVAANRGASGIDGTVATAAGFARGAGRPVTLLIGDLALLHDL 468
Query: 357 NGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416
N LA+L+ P +++V+NN GG IF LP+A+ I + YF T H + +
Sbjct: 469 NSLAMLRG----LPAVVVVLNNDGGGIFHFLPVAEHGG--IFEPYFGTPHGLGFRQAAEM 522
Query: 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFA 466
GL + +T EL A + G +IEV + N H L + A
Sbjct: 523 FGLGYSGPRTAGELSLAYQRACAEGGPHLIEVVTDRRENLALHRELLRGA 572
>sp|A4SD60|MEND_PROVI 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Prosthecochloris vibrioformis (strain DSM
265) GN=menD PE=3 SV=1
Length = 583
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 223/466 (47%), Gaps = 48/466 (10%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLD----NSPKHWMSSCLKGLDIWTSSIEPFT 57
+L+T+ V + +SP GPVH+N PFREP + ++P+ W L+ L W + P T
Sbjct: 148 LLSTIAHGVEKSLNSPRGPVHLNQPFREPFEPESCSTPEPW----LEPLQAWQTGRRPST 203
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVV 117
Q + K M + EL + L++ G +E++ A+ LA ++ P+
Sbjct: 204 VAAQPE-----KHPDMDSMRTLRELTGNARQPLIIAGNSTDENDSHAIAELADDLQVPLY 258
Query: 118 ADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
AD+ SGLR +S L +Q A S ++ + D++I G + S+ S
Sbjct: 259 ADMTSGLRFS---SSILPWQQ----------AFASPEFRNAFRPDLVIHFGGGLISRHPS 305
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
+++ P ++ NHP R+ P HSVT I++++ D L + +S + +
Sbjct: 306 DALKQWKPDHLAVIRNHPGRYSPDHSVTLSIEASLRLTADALRGCRT--GASALMAPAKR 363
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
EI+ D ++E A +S L + LF+ NSM +R +D Y
Sbjct: 364 FFTEADREIAAATAPDLPVSEIGTARIVSELLPPDHLLFLSNSMPVRAMDSYA------- 416
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
HT E P I+ NRGASGIDG++STA GFA G + + ++GD++FLHD N
Sbjct: 417 HT------GKENP---IKTGTNRGASGIDGIISTAAGFAEGHGQPLCLMIGDLAFLHDLN 467
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
L+++ R PI ++++NN+GG IFS LP+++ + I + F T N S +
Sbjct: 468 ALSLINS--LRVPIQLILLNNNGGGIFSFLPVSEFDD--IFEPNFATPQNFSGRPAAAMF 523
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
GL++ T E E+L + + +IEV N H L+
Sbjct: 524 GLDYTAPLTNSEFRESLLSALNSNRSTIIEVVCSRSENVRLHRALQ 569
>sp|B3EG68|MEND_CHLL2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=menD PE=3 SV=1
Length = 583
Score = 186 bits (472), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 133/463 (28%), Positives = 215/463 (46%), Gaps = 41/463 (8%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
++T +D AV AT S GPVHIN PFREP + L + W + P + +
Sbjct: 148 VITAIDHAVSSATGSLPGPVHINVPFREPFEPLDPDLHDPWLAPVSEWIDTSTPLCRTLS 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ +S ++ + +++ ++ G ++N + AV +LAR + P+ AD+
Sbjct: 208 QERVPNRES-----ISSLRKIIAESKLPFMIAGRLNNRSDSLAVGNLARSLNIPLYADLS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL +SF + L A S + + D +I G + +++ S +
Sbjct: 263 SGLRLD---SSF----------NPLQLAFQSSQFPERFRPDTVIHFGGPLVARQPSAAVR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL-RALDM 240
P +I++ H R P H++T I+++ + LL + P S C L
Sbjct: 310 MWNPRNHIVIKPHANRFGPDHNITLSIEASPALIAEALLGCRTPLPSG--CQPLPEPFFQ 367
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+EI D+ ++E A +S +T S LF+ NSM +RD+D+Y
Sbjct: 368 QAKAEIDICCLPDHPVSEISAARIVSSLVTPESGLFLSNSMPVRDMDLYA---------- 417
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
S + NRGASGIDG++STA GFA G K V ++GDI+FLHD N L+
Sbjct: 418 ------SPSASRPFMTGMNRGASGIDGIISTAAGFAKGLRKPVTLMIGDIAFLHDLNALS 471
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+L + P+ ++V+NN+GG IFS LP+A +E + + F T + SI+ G+
Sbjct: 472 LLPS--LQVPLCIVVLNNNGGGIFSFLPVA--SEKDVFETCFATPQSYSIKAAAETFGIE 527
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
+ T + EE + +IEV+ N H L+
Sbjct: 528 SSRPATNRDFEECCRKAAESDRCSIIEVKGNRRNNVELHRTLQ 570
>sp|B4SET5|MEND_PELPB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Pelodictyon phaeoclathratiforme (strain DSM
5477 / BU-1) GN=menD PE=3 SV=1
Length = 593
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 218/471 (46%), Gaps = 57/471 (12%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+L+T+ AV SP GPVH+N PFREPL+ + L W + +P K
Sbjct: 148 LLSTIAHAVVKTIGSPAGPVHLNQPFREPLEPEIPDLKDAWAAPLQEWLENGKPSGKSAL 207
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ ++ + + E + + L++ G + +E AV LA ++ P+ D
Sbjct: 208 PEKEPDAETLSLLR-----EALAVAKEPLIIAGNMQKPEEAEAVEQLALELQIPLYTDFS 262
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
SGLRL+ + + F H + D+++ G I +K+ + I
Sbjct: 263 SGLRLKSTTRPWQLAFASPHFTRHF-------------KPDLVLHFGGHIIAKQPAAAIR 309
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
E P YI+V NH R P H+VT I+++I L K C L + +
Sbjct: 310 EWKPKHYIVVKNHANRLSPDHNVTLSIEASIASTAAKL----------KGCRTLSSGIIN 359
Query: 242 VASE---------ISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRN 292
A+E I + + +TE A +SR +T+ LF+ NSM +RD+D N
Sbjct: 360 AATEEFFRRAEEEIDAECIGNKPVTEISAARLVSRLITAQQRLFLSNSMPVRDMD----N 415
Query: 293 WTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISF 352
+ +H PH IR A NRGASGIDG++STA GFA G K ++GDI+F
Sbjct: 416 FACSSH-----------PHA-IRSAINRGASGIDGIISTAAGFAEGDGKSTTLIIGDIAF 463
Query: 353 LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQN 412
LHD N L++L P+ ++V+NN+GG IFS LPIA+ + +++ +F T N SI++
Sbjct: 464 LHDLNALSLLGAMT--VPLQIIVLNNNGGGIFSFLPIAEYRD--LMETHFATPQNYSIRS 519
Query: 413 LCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463
GL++ +T E + +IE+ S N H L+
Sbjct: 520 AAETFGLDYACPQTNQEFTRCYLEATGSPRSIIIELRSNRAENLHHHRALQ 570
>sp|A1SRV2|MEND_PSYIN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Psychromonas ingrahamii (strain 37) GN=menD
PE=3 SV=1
Length = 581
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 220/461 (47%), Gaps = 53/461 (11%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPL-DNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
+LTT++ + +P +H N F EPL + L+ L W +PF++Y
Sbjct: 161 LLTTINQGLQQQRQTP-AAIHFNIAFSEPLYPQTATLNYQGYLQSLKQWLIDKQPFSQYF 219
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
Q + S S T + +VL ++ G V ++ A+ A +P++AD+
Sbjct: 220 QNKDSFQAASNTQLRDKKVL----------VIAGRVTGINQAQAIAEFAALNNYPLLADL 269
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
S L N+ + D L + + ++ Q D+I+Q G ++ SKR+SQ I
Sbjct: 270 QSALT---------GNANNLHYYDLL--LVNKQFTENLQQADIIVQFGGKLISKRLSQFI 318
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240
E F Y+LVD R DP+HS+ R + Q++ L+ ++P W L+ +
Sbjct: 319 E-GFAGEYLLVDPGNTRIDPAHSLRKRFVCSATQWIK-SLQNKIPDIDKHWSQVLQQQNN 376
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+ +I + ++E V L + L +++ +F+GNSM +R DM+ R
Sbjct: 377 YITKQIISPFLDNNLISEISVISALDKLLPADNPVFIGNSMPVRLSDMFFRQ-------- 428
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
N+ P NRGASGIDGLL+TA G A C ++GD SFLHD N LA
Sbjct: 429 -----NAALPF------SNRGASGIDGLLATASGIAKSCASITTLLIGDTSFLHDLNSLA 477
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+LKQ + P +++V NN GGAIF+LLP+ + + Y+ H ++ + C ++
Sbjct: 478 LLKQL--QGPFVIIVFNNDGGAIFNLLPVPTQQK----QDYYQLPHGLTFADSCRQFSID 531
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSM 461
+ Q ++ L++ + Q +R+ +E C+ + T++ +
Sbjct: 532 YYQPES---LDQFVGDYQKSLQNRLSLIEICVKNDQTYNHL 569
>sp|A7FGT2|MEND_YERP3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=menD PE=3 SV=1
Length = 567
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 215/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + E+ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPLAQQADWFFWRQ--KRGVVIAGRMGAEEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQIVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ IR +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIIRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQ 542
>sp|B2K7Z3|MEND_YERPB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=menD PE=3 SV=1
Length = 567
Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 139/455 (30%), Positives = 215/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + E+ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPLAQQADWFFWRQ--KRGVVIAGRMGAEEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQIVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLSGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQ 542
>sp|A4TM08|MEND_YERPP 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pestis (strain Pestoides F) GN=menD
PE=3 SV=1
Length = 567
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 215/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + ++ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPPAQQADWFFWRQ--KRGVVIAGRMGAQEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQMVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLRELVHQCWLRGGTTLIEVQ 542
>sp|A9R6J0|MEND_YERPG 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pestis bv. Antiqua (strain Angola)
GN=menD PE=3 SV=1
Length = 567
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 215/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + ++ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPPAQQADWFFWRQ--KRGVVIAGRMGAQEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQMVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLRELVHQCWLRGGTTLIEVQ 542
>sp|B1JH88|MEND_YERPY 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=menD PE=3 SV=1
Length = 567
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + E+ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPLAQQADWFFWRQ--KRGVVIAGRMGAEEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQIVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
+++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AVYSESAQAQVIETLSGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQ 542
>sp|Q669C7|MEND_YERPS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=menD PE=3 SV=1
Length = 567
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + E+ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPLAQQADWFFWRQ--KRGVVIAGRMGAEEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQIVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
+++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AVYSESAQAQVIETLSGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E + G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLREHVHQCWLRGGTTLIEVQ 542
>sp|Q1CHS9|MEND_YERPN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=menD PE=3 SV=1
Length = 567
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + ++ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPPAQQADWFFWRQ--KRGVVIAGRMGAQEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQMVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLRELAHQCWLRGGTTLIEVQ 542
>sp|Q7CJ76|MEND_YERPE 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pestis GN=menD PE=3 SV=1
Length = 567
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + ++ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPPAQQADWFFWRQ--KRGVVIAGRMGAQEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQMVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLRELAHQCWLRGGTTLIEVQ 542
>sp|Q1C6D7|MEND_YERPA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua)
GN=menD PE=3 SV=1
Length = 567
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 214/455 (47%), Gaps = 67/455 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++TLDSA+ +G +HINCPF EPL + + L W P+ +
Sbjct: 148 LVSTLDSAM---AQLQHGALHINCPFAEPLYGGDEQQYADWSASLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSY-TYCQMAEVLELVQGVNKGLLLVGAVHNED----EIWAVLHLARHIRWPV 116
Q + Y Q A+ Q +G+++ G + ++ WA + + WP+
Sbjct: 202 -QTCYPPSLYQPPAQQADWFFWRQ--KRGVVIAGRMGAQEGRQLTAWAAM-----LGWPL 253
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L H E++ Q +++Q GS +TSKR
Sbjct: 254 IGDVLS------------QTGQPLPCADLWLAHPRAQETLA---QAQMVLQFGSSLTSKR 298
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ P R DP++ HR + I ++L + R + W + L
Sbjct: 299 LLQWQTACQPQEYWLVDSAPGRLDPAN---HRGRRIICPVGEWLSR-HPAQRRTPWATEL 354
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
A +++ + +S E VAH+L+ L N LFVGNS+ +R +D G+
Sbjct: 355 AAYSESAQAQVIETLAGQFS--EAAVAHQLAELLPDNGQLFVGNSLIVRLIDALGQ---- 408
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGLLSTA G K L +VGD+S L+D
Sbjct: 409 ---------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSALYD 454
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLC 414
N LA+L+Q P+++LVINN+GG IFSLLP P Q FY +++ ++
Sbjct: 455 LNALALLRQ--SSAPMVLLVINNNGGQIFSLLPT-----PEAERQRFYCMPQDVNFEHAA 507
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
+ L + + + +L E G +IEV+
Sbjct: 508 VMFSLGYARPNSWPQLRELAHQCWLRGGTTLIEVQ 542
>sp|B1HY21|MEND_LYSSC 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Lysinibacillus sphaericus (strain C3-41)
GN=menD PE=3 SV=1
Length = 571
Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 199/435 (45%), Gaps = 63/435 (14%)
Query: 9 AVHWATSSPYGPVHINCPFREPL-----DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQ 63
AV ATS+P+GPVH+N PFREPL D P G I T+S
Sbjct: 156 AVAIATSAPFGPVHLNVPFREPLLIDLQDELPTMTFKHSSMGQLIPTTS----------- 204
Query: 64 HSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSG 123
M E+ ++ KG ++VG + ++ + R ++WPV+ + LS
Sbjct: 205 -----------AMQELSSILNSTRKGFMIVGELALGTDLAFLWEFVRQLKWPVIVESLSN 253
Query: 124 LRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEEC 183
+R A+ E L + D + SE K +Q D +++IG++ SK I Q I +
Sbjct: 254 MR-----AAVPEDCLPYLVTTY-DAIMKSEDFKALVQPDTVLRIGAQPVSKFIMQFITKT 307
Query: 184 FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVA 243
P Y+++D P D + TH I + I Q++ L S + +A
Sbjct: 308 QPSAYVIIDEDPMFRDATGVSTHFIHANIDQWLTHLTLTNTAFEESYLAEWQKA------ 361
Query: 244 SEISFQICADYSLTEPHVAHELSRALT---SNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
++++ YS E +SR L S +FV +SM +RD+D + T
Sbjct: 362 NQLASTYIEQYSEIEKDEGAMVSRLLKMIPDGSDIFVSSSMPVRDIDTF------LLATP 415
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
DI R NRG +GIDG++STA+GF+ G ++ ++GD++FLHD NGL
Sbjct: 416 KDI-----------RFFANRGTNGIDGVVSTALGFSQGNDRETYLLIGDLAFLHDVNGL- 463
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
+ R + + +LV+NN GG IFS LP T + F T + Q++ + ++
Sbjct: 464 -IATRYQECNLTILVMNNDGGGIFSYLP--QSTVEAHYEDLFGTPTALEFQDIAHMYNMD 520
Query: 421 HVQVKTKVELEEALS 435
+V+V T EL S
Sbjct: 521 YVRVDTIAELSGKFS 535
>sp|A4SS26|MEND_AERS4 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Aeromonas salmonicida (strain A449) GN=menD
PE=3 SV=1
Length = 572
Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 209/439 (47%), Gaps = 54/439 (12%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHW-MSSCLKGLDIWTSSIEPFTKY 59
+L+++D + +P GPVH NC + EPL ++ S L L W S EP++ +
Sbjct: 150 FVLSSVDQVLAQQALTP-GPVHFNCMYPEPLYPGDEYLDFSGYLAPLGDWLHSSEPWSPW 208
Query: 60 IQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVAD 119
Q + C +QG +G+++ G + + + V LA + WP++AD
Sbjct: 209 QQNEQ--------ICPRQPDWAALQG-KRGIIVAGRIQDPAQAQVVAELAERLGWPLLAD 259
Query: 120 ILSGLRLRKLLASFLETEQNILFLDHLDHALLSES-VKDWIQFDVIIQIGSRITSKRISQ 178
+ S +R +N++ H+D AL + V + + +V++Q G+R+ SKR+ Q
Sbjct: 260 LQSQIRF---------DARNLI---HMDLALQNSCFVAELARAEVLLQFGARLISKRLGQ 307
Query: 179 MIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238
I++ Y LVD P R DP + + R+ + + F +V R W A
Sbjct: 308 FIKQHPWQDYWLVDPQPARLDPDYRLRRRL---VCEPAAFAATHKVSTRHLPWHRL--AE 362
Query: 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTH 298
A+ C +S E V H L + LFVGNSM R +DM G +
Sbjct: 363 RQQSATRQIRSACDRFS--ELGVCHRLGNLIQGQ--LFVGNSMPARLMDMLGEAGKGPS- 417
Query: 299 TVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNG 358
RV NRGASGIDGL++TA GFA + ++GD+S LHD N
Sbjct: 418 ----------------RVMTNRGASGIDGLIATAYGFAQSSEQPTTLLIGDLSALHDLNS 461
Query: 359 LAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHG 418
LA+L + +P++++++NN GG+IF +LP+ T R+L+ Y+ H + ++ G
Sbjct: 462 LALLGK--SSRPLVVILLNNDGGSIFRMLPVP--TGDRLLETYYCLPHGLHFEHAAAMFG 517
Query: 419 LNHVQVKTKVELEEALSMS 437
L++ T E E+A + +
Sbjct: 518 LHYRAPTTLAEFEQAYTAA 536
>sp|A7Z812|MEND_BACA2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=menD PE=3 SV=1
Length = 578
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/466 (27%), Positives = 207/466 (44%), Gaps = 45/466 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
I T AV A P GPVHIN P REPL D+ + E K
Sbjct: 147 IRTLAGRAVSEAGKRPMGPVHINVPLREPLMP-------------DLSAAPFERMRKGRH 193
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
V + +S + + E + G +G+++ G +H E E ++ LA +++P++AD L
Sbjct: 194 VSVTTGIQSADQDSLCHITERLAGTERGMIVCGEIHGEAEKQQIIALAEMLQFPILADPL 253
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S LR K L +D D L E++K+ ++ D +I+ G SK + +
Sbjct: 254 SNLRNGK--------HDKTLIIDAYDSFLKDEAIKEALRPDAVIRFGPMPVSKPLFLWLR 305
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241
+ +VD DP+ + H I F++ + + R S W + ++
Sbjct: 306 DDPAIEQFIVDEDGGWRDPTQAGAHMIHCHPSVFLEAVRSAETGKRPSGWLEKWQFVNER 365
Query: 242 VASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVA 301
S + D S E +V +L + S++FVGNSM IRD+D +
Sbjct: 366 FRSHLQAASMDDLSF-EGNVYRQLQHLVPEGSSIFVGNSMPIRDVDTF------------ 412
Query: 302 DIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAI 361
E + RV NRGA+GIDG++S+A+G G V V+GD+SF HD NGL
Sbjct: 413 -----FEKQDRSFRVYANRGANGIDGVVSSAMGLCEGTKAPVTLVIGDLSFYHDLNGL-- 465
Query: 362 LKQRMKRKPILMLVINNHGGAIFSLLPIA-DRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
L + P+ +++INN GG IFS LP A D+T ++ F T + ++ +G
Sbjct: 466 LAAKKLGIPLTVILINNDGGGIFSFLPQASDKTH---FEELFGTPTGLDFRHAAALYGGT 522
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFA 466
+ +T ++A +IE+++ + FH L + A
Sbjct: 523 YTCPETWEAFKDAYQPQADKPGLHIIELKTDRTSRVQFHRDLLQAA 568
>sp|Q8Y6K9|MEND_LISMO 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=menD PE=3 SV=1
Length = 580
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 228/470 (48%), Gaps = 74/470 (15%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
AV A +P GPVH+N P REPL + I S PFT + +H H
Sbjct: 157 AVDIAMKTPRGPVHLNFPLREPL--------------VPILEPS--PFTATGK-KHHHVH 199
Query: 69 KSYTYCQMAEVLE--LVQGV------NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
YT+ EVL+ +Q + KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 200 IYYTH----EVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 255
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR L + + +D D L + D + +V+I+ GS SK + +
Sbjct: 256 LSGLRSYGAL--------DEVVIDQYDAFLKEAEIMDKLTPEVVIRFGSMPVSKPLKNWL 307
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRS------SKWCSF 234
E+ + +VD DP +VT I +F+ +++ +P + S+W S+
Sbjct: 308 EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCD-ERFLLDIMQQNMPDDAKDAAWLSRWTSY 366
Query: 235 LRALDMMVASEISFQICADYS-LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
+ VA EI A+ + L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 367 NK-----VAREIVLAEMANTTILEEGKIVAELRRLLPEKAGLFIGNSMPIRDVDTYFSQI 421
Query: 294 TTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFL 353
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF
Sbjct: 422 D-----------------KKIKMLANRGANGIDGVVSSALGASV-VFQPMFLLIGDLSFY 463
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413
HD NGL + K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + +
Sbjct: 464 HDMNGLLMAKKY--KMNLTIVIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFA 519
Query: 414 CLAHGLNHVQVKTKVELEEALS-MSQHLGTDRVIEVESCIDANATFHSML 462
+ ++ + ++ ELEEA+ S H G D +IEV++ N H L
Sbjct: 520 AAFYDADYHETQSVDELEEAIDKASYHKGLD-IIEVKTNRHENKANHQAL 568
>sp|A6VMF8|MEND_ACTSZ 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Actinobacillus succinogenes (strain ATCC
55618 / 130Z) GN=menD PE=3 SV=1
Length = 568
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/476 (28%), Positives = 220/476 (46%), Gaps = 75/476 (15%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNS-----PKH-WMSSCLKGL---DIWTSS 52
+++TLD A H + G VHIN PF EPL + +H W+ + L WT
Sbjct: 151 LISTLDQACH-SQLVEKGVVHINVPFAEPLYEANVTEIDEHVWLGPVRRWLGQHKKWTEY 209
Query: 53 IEPFTKYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHI 112
EP + + +H ++ +A +L QG GL ++WA +
Sbjct: 210 QEPQLEVLMHEHWDDWRTKRGVIVAG--KLPQGHGMGL----------KLWA-----ETM 252
Query: 113 RWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKD-WIQFDVIIQIGSRI 171
W ++ D+ SG+ L + D L +++V++ +Q D+++Q+G+
Sbjct: 253 GWVLLTDVQSGVEPT---------------LPYADIWLANKTVREKLLQADLVVQLGAHF 297
Query: 172 TSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKW 231
SKRI+Q + + F + +VD P R DP H + R + L+ P R W
Sbjct: 298 VSKRINQFLSD-FKGEFWVVDESPKRLDPYHHIQTRFNAK----AHLWLRAHPPLRQKPW 352
Query: 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGR 291
AL +S I Q+ SL E +AH + RA N+ALF+GNS+ +R +D +
Sbjct: 353 LLEAMALSNFCSSFIEQQVGG--SLNEASLAHHIERAFPKNAALFLGNSLFVRLVDALTK 410
Query: 292 NWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDIS 351
+P + NRGASGIDGL++TA+G +G N+ V VVGD+S
Sbjct: 411 R-------------TENYP-----IYTNRGASGIDGLIATAVGVGIGANQAVAAVVGDMS 452
Query: 352 FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQ 411
L+D N LA+LK+ +P ++ VINN+GGAIF +LP+ E + Y+ HN+
Sbjct: 453 ALYDLNSLALLKKVT--QPFVLFVINNNGGAIFDMLPV----EAEAKNAYYRLPHNLGFA 506
Query: 412 NLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCI-DANATFHSMLRKFA 466
L + + T +L L + VIE+++ DA + +L + +
Sbjct: 507 EAASVFDLKYARPYTWADLGSVLKQAYMRKEATVIEIKAGPNDATNLYKRLLEQIS 562
>sp|Q92AY5|MEND_LISIN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=menD PE=3 SV=1
Length = 580
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 229/470 (48%), Gaps = 74/470 (15%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
AV A +P GPVH+N P REPL + I S PFT + +H H
Sbjct: 157 AVDIAMKTPRGPVHLNFPLREPL--------------VPILEPS--PFTATGK-KHHHVH 199
Query: 69 KSYTYCQMAEVLE--LVQGV------NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
YT+ EVL+ +Q + KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 200 IYYTH----EVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 255
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR S+ ++ + +D D L + D + +V+I+ GS SK + +
Sbjct: 256 LSGLR------SYGAMDE--VVIDQYDAFLKEADILDKLTPEVVIRFGSMPVSKPLKNWL 307
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRS------SKWCSF 234
E F + +VD DP +VT I +F+ +++ +P + ++W S+
Sbjct: 308 EHLFGIRFYVVDPGAAWKDPIKAVTDMIHCD-ERFLLDIMQQNMPDDTKDASWLNRWTSY 366
Query: 235 LRALDMMVASEISFQICADYS-LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
+ A EI + A+ + L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 367 NQK-----AREIVLEEMANTTTLEEGKIVSELRRLLPDKAGLFIGNSMPIRDVDTYFSQI 421
Query: 294 TTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFL 353
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF
Sbjct: 422 D-----------------KKIKMLANRGANGIDGVVSSALGASV-VFQPMFLLIGDLSFY 463
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413
HD NGL + K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + +
Sbjct: 464 HDMNGLLMAKKY--KMNLTIIIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFA 519
Query: 414 CLAHGLNHVQVKTKVELEEALS-MSQHLGTDRVIEVESCIDANATFHSML 462
+ ++ + K+ LEEA+ S H G D +IEV++ N H L
Sbjct: 520 AAFYDADYHEAKSVDSLEEAIDKASYHKGLD-IIEVKTNRHENKANHQAL 568
>sp|Q71YZ2|MEND_LISMF 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=menD PE=1 SV=1
Length = 580
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 140/470 (29%), Positives = 226/470 (48%), Gaps = 74/470 (15%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
AV A +P GPVH+N P REPL + I S PFT + +H H
Sbjct: 157 AVDIAMKTPRGPVHLNFPLREPL--------------VPILEPS--PFTATGK-KHHHVH 199
Query: 69 KSYTYCQMAEVLE--LVQGV------NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
YT+ EVL+ +Q + KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 200 IYYTH----EVLDDSSIQKMVTECTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 255
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR L + + +D D L + D + +V+I+ GS SK + +
Sbjct: 256 LSGLRSYGAL--------DEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWL 307
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSK------WCSF 234
E+ + +VD DP +VT I +F+ +++ +P + W S+
Sbjct: 308 EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCD-ERFLLDIMQQNMPDDAKDAAWLNGWTSY 366
Query: 235 LRALDMMVASEISFQICADYS-LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
+ VA EI A+ + L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 367 NK-----VAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI 421
Query: 294 TTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFL 353
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF
Sbjct: 422 D-----------------KKIKMLANRGANGIDGVVSSALGASV-VFQPMFLLIGDLSFY 463
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413
HD NGL + K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + +
Sbjct: 464 HDMNGLLMAKKY--KMNLTIVIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFA 519
Query: 414 CLAHGLNHVQVKTKVELEEALS-MSQHLGTDRVIEVESCIDANATFHSML 462
+ ++ + K+ ELEEA+ S H G D +IEV++ N H L
Sbjct: 520 AAFYDADYHEAKSVDELEEAIDKASYHKGLD-IIEVKTNRHENKANHQAL 568
>sp|A7MHU4|MEND_CROS8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=menD PE=3 SV=1
Length = 555
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 201/454 (44%), Gaps = 72/454 (15%)
Query: 19 GPVHINCPFREPL----DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYC 74
G +HIN PF EPL D + W + + W + P+ +Y ++Q A + +
Sbjct: 162 GALHINTPFAEPLYGELDETDLTWQQAPGE----WWQTTTPWLRYEKIQAVSAQADWPFW 217
Query: 75 QMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFL 134
+ +G++L G + E AV A + WP++ D+LS
Sbjct: 218 RE----------QRGVVLAGRL-TAQEGEAVAQWAARLGWPLIGDVLS------------ 254
Query: 135 ETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYIL 190
+T Q + L+L H A L Q V++Q G +T KR+ Q EC P Y +
Sbjct: 255 QTGQPLPCADLWLAHPRAAALLA------QAPVVVQFGGSLTGKRVLQWQSECRPQEYWV 308
Query: 191 VDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQI 250
VD P R DP+H RI + I + L+ H W L L ++ ++
Sbjct: 309 VDPLPGRLDPAHHRGRRIVADISAW----LEQHPAHPMMPWDEPLEGLAAQTQRIVAREL 364
Query: 251 CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310
E VAH L L + LF+GNS+ +R +D + L + +P
Sbjct: 365 T---EWGEAQVAHRLPELLPPDGQLFLGNSLTVRLVDALAQ-------------LPAGYP 408
Query: 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKP 370
V GNRGASGIDGL+STA G K L V+GD+S L+D N LA+L R P
Sbjct: 409 -----VYGNRGASGIDGLVSTAAGVQRATGKPTLAVLGDLSTLYDLNALALL--RDAPAP 461
Query: 371 ILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL 430
+++V+NN+GG IFS+LP T R ++++ N+ LN+ ++ L
Sbjct: 462 FVLIVVNNNGGQIFSMLP----TPAREREKFYCMPQNVCFAPAAAMFSLNYDAPESLAAL 517
Query: 431 EEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464
+EA++ + VIE+ A A S L K
Sbjct: 518 KEAVTRAWRSSVATVIELRVPETAGAQVFSRLLK 551
>sp|C6DBP2|MEND_PECCP 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=menD PE=3 SV=1
Length = 560
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/472 (27%), Positives = 224/472 (47%), Gaps = 70/472 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPL---DNSPKHWMSSCLKGLDIWTSSIEPFTK 58
+++++DSA+ +G +HINCPF EPL D+ + L L W SS EP+ +
Sbjct: 148 LVSSVDSAM---ARLAHGALHINCPFAEPLYGADDGTAY--QDWLIALGDWWSSREPWLR 202
Query: 59 YIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVA 118
+++ S + + Q + +G++LVG V E + A + WP++
Sbjct: 203 --EMRQSALAEQPDWPQWRQ--------KRGVVLVGRVSPEQGA-RLAAWANELGWPLIG 251
Query: 119 DILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
D+LS ++ Q + D L H ++ ++ Q ++++Q G +T KR+
Sbjct: 252 DVLS------------QSGQPLPCADIWLAHPDAADRLR---QAEIVLQFGGSLTGKRLL 296
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
Q E+C P + L+D+ P R DP+H R+ + + ++ L H+ + W L
Sbjct: 297 QWQEQCQPQEFWLIDDLPGRLDPAHHRGRRLVADVGEW----LSAHPAHKQAPWADMLVD 352
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
+ +I + + + E +A + L + LFVGNS+ +R +D +
Sbjct: 353 IADKTQRQIDTHLASRFG--EAQLAQRIPALLPPDGQLFVGNSLVVRLIDALAQ------ 404
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
L +P V GNRGASGIDGL+ST G K +L +VGD+S L+D N
Sbjct: 405 -------LPQGYP-----VYGNRGASGIDGLISTLAGVQRATAKPMLGIVGDLSALYDLN 452
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLL--PIADRTEPRILDQYFYTTHNISIQNLCL 415
LA+L+Q P++++V+NN+GG IFSLL P+A R + ++ N+ +
Sbjct: 453 ALALLRQ--APAPLVLIVVNNNGGQIFSLLPTPVAQR------ETFYCMPQNVEFGHAAA 504
Query: 416 AHGLNHVQVKTKVELEEALSMSQHLGTDRVIE-VESCIDANATFHSMLRKFA 466
GLN+V+ +L ++ G ++E V D AT + ++ + A
Sbjct: 505 MFGLNYVRADNWEQLANTVTDCWAQGGVTLLEVVVEPKDGAATLNELVAQVA 556
>sp|A8GGZ1|MEND_SERP5 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Serratia proteamaculans (strain 568) GN=menD
PE=3 SV=1
Length = 557
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/472 (26%), Positives = 213/472 (45%), Gaps = 67/472 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++T+DSA+ +G +HINCPF EPL + + L W P+ + +
Sbjct: 148 LVSTVDSAM---ARLQHGALHINCPFAEPLYGGDEQQYADWSATLGDWWQGNHPWLREVD 204
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ + + +G+++ G + + DE + A + WP++ D+L
Sbjct: 205 PHQVLKQPDWFFWRQ----------KRGVIVAGRM-SADEGEHLAQWAEMLGWPLIGDVL 253
Query: 122 SGLRLRKLLASFLETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
S +T Q + L+L ++ K + +++Q GS +T KR+
Sbjct: 254 S------------QTGQPLPCADLWLAQ------PQAQKRLAEAQLVVQFGSSLTGKRLL 295
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRA 237
Q E+C P Y L+D+ P R DP+H RI+S++ Q+ L++ + W L
Sbjct: 296 QWQEQCQPQEYWLIDDLPGRLDPAHHRGRRIRSSVAQW----LELHPAQPRTPWADELTM 351
Query: 238 LDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCT 297
L +S + + E +AH L L N LF+GNS+ +R +D R
Sbjct: 352 LADNALDAVSGHLVNRFG--EAQLAHRLPELLPENGQLFLGNSLIVRLIDALTR------ 403
Query: 298 HTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTN 357
L + +P V NRGASGIDGL+STA G K L VVGD+S L+D N
Sbjct: 404 -------LPAGYP-----VFSNRGASGIDGLISTAAGVQRATAKPTLAVVGDLSALYDLN 451
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417
LA+L+Q P +++V+NN+GG IFSLLP + R ++ N+ +
Sbjct: 452 ALALLRQ--CSAPTVLIVVNNNGGQIFSLLPTPEEDRQR----FYCMPQNVEFSHAAAMF 505
Query: 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVE-SCIDANATFHSMLRKFARQ 468
L + + + +L +A+ G +IE++ D T ++++ Q
Sbjct: 506 QLAYARPENWGQLLQAVEQGWRHGGATLIELQVPPSDGAQTLQHLVQQMTEQ 557
>sp|A6TBV8|MEND_KLEP7 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=menD PE=3 SV=1
Length = 556
Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 210/458 (45%), Gaps = 73/458 (15%)
Query: 19 GPVHINCPFREPL----DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYC 74
G VHINCPF EPL D + W L W S +P+ + S + + +
Sbjct: 162 GGVHINCPFAEPLYGDMDETGVEWQQQ----LGNWWQSDKPWLRQALQLESEKQRDWFFW 217
Query: 75 QMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFL 134
+ +G+++ G + + E V A+ + WP++ D+LS
Sbjct: 218 RQ----------KRGVVVAGRM-SAAEGKKVAEWAQTLGWPLIGDVLS------------ 254
Query: 135 ETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYIL 190
+T Q + L+L + ++V + Q +++Q+GS +T KR+ Q C P Y L
Sbjct: 255 QTGQPLPCADLWLGN------GKAVSELAQAQIVVQLGSSLTGKRVLQWQATCEPDEYWL 308
Query: 191 VDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQI 250
VDN P R DP+ R+ S++ ++++ H + K + + + +
Sbjct: 309 VDNLPGRLDPAQHCGRRLLSSVERWLEL-------HPAEKRQPWATVIPQLAGQAWQAAV 361
Query: 251 CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310
++ E +A + R L LFVGNS+ +R +D + L + +P
Sbjct: 362 ASNEPFGEAQLAQRIRRYLPEQGQLFVGNSLVVRLIDALAQ-------------LPAGYP 408
Query: 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKP 370
V NRGASGIDGL++TA G + L +VGD+S L+D N LA+L+Q P
Sbjct: 409 -----VYSNRGASGIDGLIATAAGVQRASARPTLAIVGDLSALYDLNSLALLRQ--ASAP 461
Query: 371 ILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL 430
++++V+NN+GG IFS+LP + E R Q++ ++ + + GL + + L
Sbjct: 462 LVLIVVNNNGGQIFSMLPT-PQDERR---QFYLMPQDVDFSHAAVMFGLAYHRPDDWPSL 517
Query: 431 EEALSMSQHLGTDRVIEVE-SCIDANATFHSMLRKFAR 467
+EAL+ + VIE+ + D T +L + +R
Sbjct: 518 DEALAGAWRRAGATVIELAVNETDGAQTLQQLLAQVSR 555
>sp|A0AJC9|MEND_LISW6 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=menD PE=3 SV=1
Length = 580
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 223/461 (48%), Gaps = 56/461 (12%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
AV A +P GPVH+N P REPL + I S P+T + +H H
Sbjct: 157 AVDIAMKTPRGPVHLNFPLREPL--------------VPILEPS--PYTATGK-KHHHVH 199
Query: 69 KSYTYCQM--AEVLELVQGV--NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGL 124
YT+ + + + ++V KG+ +VG + ++ ++ LA+ + WP++AD LSGL
Sbjct: 200 IYYTHEVLDDSSIQKMVTDCTGKKGVFVVGPIDKKEIEQPMVDLAKKLGWPILADPLSGL 259
Query: 125 RLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECF 184
R S+ ++ + +D D L ++ D + +V+I+ GS SK + +E+
Sbjct: 260 R------SY--GAKDDVVIDQYDAFLKEAAIWDNLTPEVVIRFGSMPVSKPLKNWLEQLS 311
Query: 185 PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRS--SKWCSFLRALDMMV 242
+ +VD DP +VT I +D + K +P + S W + A +
Sbjct: 312 DIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQK-NMPDDTKISAWLNRWTAYNQTA 370
Query: 243 ASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVAD 302
+ ++ +L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 371 REIVLTEMENTTTLEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQID-------- 422
Query: 303 IMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAIL 362
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF HD NGL +
Sbjct: 423 ---------KKIKMLANRGANGIDGVVSSALGASV-VFQPMFLLIGDLSFYHDMNGLLMA 472
Query: 363 KQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHV 422
K+ + + ++++NN GG IFS LP A EP+ + F T+ + + + ++
Sbjct: 473 KKY--KMNLTIIIVNNDGGGIFSFLPQA--KEPKYFESLFGTSTELDFRFAAAFYDGDYH 528
Query: 423 QVKTKVELEEALSMSQ-HLGTDRVIEVESCIDANATFHSML 462
+ K+ ELEEA+ + H G D +IEV++ N H L
Sbjct: 529 EAKSVDELEEAVDKATYHKGLD-IIEVKTNRHENKANHQAL 568
>sp|A8ADW9|MEND_CITK8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=menD PE=3 SV=1
Length = 556
Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 214/459 (46%), Gaps = 77/459 (16%)
Query: 19 GPVHINCPFREPL----DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYC 74
G VHINCPF EPL D++ W S L W +P+ + + S + + +
Sbjct: 162 GAVHINCPFAEPLYGDMDDTGLAWQQS----LGDWWQDDKPWLREARRLESDKQRDWFFW 217
Query: 75 QMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFL 134
+ +G+++ G + E+ V A+ + WP++ D+LS
Sbjct: 218 RQ----------KRGVVVAGRMSAEEGK-KVALWAQTLGWPLIGDVLS------------ 254
Query: 135 ETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYIL 190
+T Q + L+L + +++V + Q +++Q+GS +T KR+ Q C P Y +
Sbjct: 255 QTGQPLPCADLWLGN------AKAVTELQQAQIVVQLGSSLTGKRLLQWQAACEPEEYWI 308
Query: 191 VDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQI 250
+DN R DP+H HR + + + D+L ++ + WC +D+ +E ++Q
Sbjct: 309 IDNIEGRLDPAH---HRGRRLVAKIADWL-ELHPAEKRHPWC-----VDIPRLAEQAWQA 359
Query: 251 CADYS--LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSE 308
A E +AH + L LFVGNS+ +R +D + L +
Sbjct: 360 VAARRDMFGEAQLAHRIRDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAG 406
Query: 309 FPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKR 368
+P V NRGASGIDGL+STA G K L +VGD+S L+D N LA+L+Q
Sbjct: 407 YP-----VYSNRGASGIDGLISTAAGVQRASAKSTLAIVGDLSALYDLNALALLRQ--VS 459
Query: 369 KPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKV 428
P +++V+NN+GG IFSLLP R ++ N+ ++ L + + ++
Sbjct: 460 APFVLIVVNNNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFNLKYHRPQSWD 515
Query: 429 ELEEALSMSQHLGTDRVIE-VESCIDANATFHSMLRKFA 466
EL+ AL+ + T VIE V + D T +L + +
Sbjct: 516 ELDAALAGAWRTPTTTVIELVVNDTDGAQTLQQLLAQVS 554
>sp|Q2JK10|MEND_SYNJB 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=menD PE=3 SV=1
Length = 608
Score = 163 bits (412), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 217/457 (47%), Gaps = 61/457 (13%)
Query: 19 GPVHINCPFREPL------DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYT 72
GPVH+N PFR+PL +P + + + + P +Q A +S
Sbjct: 177 GPVHLNVPFRDPLAPIADGSTAPLLHLQEDPEFEKTFFRGVAPPCTGSSLQ---AVRSPF 233
Query: 73 YCQMAEVLELVQGVNKGLLLVGAVHNEDE---IWAVLHLARHIRWPVVADILSGLRLRKL 129
+ + +G +G++L G D + AV HLA + WPV+A+ LS LR
Sbjct: 234 QTETVSFWQEWRGCERGVILAGPAQPADPQRYVEAVAHLATALGWPVLAEGLSPLRNYAS 293
Query: 130 LASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYI 189
L +L T +++ L + + W + +IQ+GS TSK + Q + + P +
Sbjct: 294 LNPYLITTYDLI--------LQRDRPQLWP--EQVIQLGSLPTSKALRQTLAKVAPRVWR 343
Query: 190 LVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQ 249
L D P DP H+ T + + ++V +P +K +FL+ + +E +
Sbjct: 344 L-DPRPDNGDPLHNPTTHLPFAVEEWV-----AGIPEAPAKRTTFLQG---WLTAEAQIR 394
Query: 250 ICADYSLT------EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADI 303
D ++T E VA L+ L + LF+ NS +RD++ + W
Sbjct: 395 AALDQAMTDLSEWFEGKVAWWLAHHLPPETPLFIANSTPVRDVEWF---WPPNDRR---- 447
Query: 304 MLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKH-VLCVVGDISFLHDTNGLAIL 362
IR NRG +GIDG+LSTA+G A G +K + + GD++FLHD++GL +
Sbjct: 448 ----------IRPYFNRGTNGIDGILSTALGVAHGSHKRPTVLLTGDLAFLHDSSGLRLG 497
Query: 363 KQRMKRKPILMLVINNHGGAIFSLLPIAD--RTEP-RILDQYFYTTHNISIQNLCLAHGL 419
+Q R + +L+INN GG IF LLPIA+ R P + YF T + + LC AHG+
Sbjct: 498 QQ--VRGSLTILLINNQGGGIFELLPIAEVGRQGPDPPFEPYFATPQLVDLALLCQAHGI 555
Query: 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456
H +V++ EL +AL G RV+E+ + A+A
Sbjct: 556 PHRRVESWQELAQALDPLPAQGV-RVLEILTDRKADA 591
>sp|A1JKT8|MEND_YERE8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=menD PE=3 SV=1
Length = 557
Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 218/459 (47%), Gaps = 80/459 (17%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+++T+DSA+ +G +H+NCPF EPL + + L W P+ +
Sbjct: 148 LVSTIDSAM---AQLHHGGLHVNCPFAEPLYGGDEQCYADWSATLGDWWQDCHPWLR--- 201
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+S Q+ + L +G+++ G + E E + A + WP++ D+L
Sbjct: 202 -------QSRPLPQIEQADWLFWRQKRGVVIAGRMTAE-EGEQLAQWAELLGWPLIGDVL 253
Query: 122 SGLRLRKLLASFLETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS 177
S +T Q + L+L H + + Q +++Q GS +T KR+
Sbjct: 254 S------------QTGQPLPCADLWLAH------PGAQRVLAQAQIVLQFGSSLTGKRLL 295
Query: 178 QMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLR 236
Q +C P Y LVD+ R DP++ RI S + ++++ Q P R + W S
Sbjct: 296 QWQAQCQPQEYWLVDSIAGRLDPANHRGRRIISPVNEWLE-----QHPALRRTPWAS--- 347
Query: 237 ALDMMVASEIS---FQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNW 293
++++ SE + + + +E VAH L+ L N LFVGNS+ +R +D G+
Sbjct: 348 --ELIIWSENAHAHVEQALNEQFSEAAVAHRLAELLPENGQLFVGNSLIVRLIDALGQ-- 403
Query: 294 TTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFL 353
L + +P V NRGASGIDGLLSTA G K L +VGD+S L
Sbjct: 404 -----------LPAGYP-----VYSNRGASGIDGLLSTAAGVQRATAKPTLAIVGDLSAL 447
Query: 354 HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI--ADRTEPRILDQYFY-TTHNISI 410
+D N LA+L+Q P ++LV+NN+GG IFSLLP ADR Q FY N+S
Sbjct: 448 YDLNALALLRQ--SSAPTVLLVVNNNGGQIFSLLPTPEADR-------QRFYCMPQNVSF 498
Query: 411 QNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
++ GL + + ++ + L++ + G +IE+E
Sbjct: 499 EHAAAMFGLGYSRPESGLMLKQQVDQCWLRGGVTLIEIE 537
>sp|A5UPB5|MEND_ROSS1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Roseiflexus sp. (strain RS-1) GN=menD PE=3
SV=1
Length = 583
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 137/474 (28%), Positives = 207/474 (43%), Gaps = 64/474 (13%)
Query: 9 AVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHAC 68
A+ A P G VH+N PFR PL+ +P + G DI T+ + Q A
Sbjct: 156 AMAIAGGEPPGVVHLNLPFRPPLEPTP-------VAG-DI-TAPPD------AAQPRQAG 200
Query: 69 KSYTYCQMA-----------EVLELVQGVNKGLLLVGAVHNEDEIWAVL-HLARHIRWPV 116
YTYC A ++ L+Q +GL++ G E A++ LA +P
Sbjct: 201 APYTYCLTATRSGVPEAVIEQIASLLQQHERGLIVCGPRCPSGEFGALVSELADRTGYPA 260
Query: 117 VADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRI 176
+ D +SG+R + + LF +H + DV+++ G+ TSK +
Sbjct: 261 LVDGVSGIRFG--YPGVIGGYETFLFGEH-----------SFPPPDVVVRFGAVPTSKWL 307
Query: 177 SQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLR 236
+Q ++ P I V D SH V+H I + F+ LL + R W
Sbjct: 308 NQYLDTAAPSAVIHVRAGGVWADDSHRVSHFIAADESAFIRALLP-HLKERRGAWIQMFE 366
Query: 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296
+ V S + + D + ++ L +ALFVGNS+ +R LD +G+
Sbjct: 367 EAEAQVWSAVEAALN-DEPYFDGAAVYDAVSLLPEGAALFVGNSLPVRHLDQFGKPGARR 425
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG-CNKHVLCVVGDISFLHD 355
H A NRGASGIDG +STA+G G + + +VGDI+F HD
Sbjct: 426 IHAFA-----------------NRGASGIDGNISTALGVGAGRPDTPMAAIVGDITFYHD 468
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL 415
NGL L R PI ++++NN GG IF LPI +R EP D YF T H + +
Sbjct: 469 MNGL--LAVRRCGVPITIVLLNNDGGGIFHRLPI-NRFEPEFTD-YFVTPHGLHFAHAAK 524
Query: 416 AHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469
+GL++VQV+ + A S +IE+ + A+ L + A+ S
Sbjct: 525 MYGLDYVQVRDREAFRRAFRESIEARAATIIELRTDARADLARRPALMRSAKAS 578
>sp|B5XNX0|MEND_KLEP3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Klebsiella pneumoniae (strain 342) GN=menD
PE=3 SV=1
Length = 556
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/460 (27%), Positives = 213/460 (46%), Gaps = 77/460 (16%)
Query: 19 GPVHINCPFREPL----DNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYC 74
G VHINCPF EPL D + W L W S +P+ + S + + +
Sbjct: 162 GGVHINCPFAEPLYGDMDETGVEWQQQ----LGNWWQSDKPWLRQALQLESEKQRDWFFW 217
Query: 75 QMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFL 134
+ +G+++ G + + E V A+ + WP++ D+LS
Sbjct: 218 RQ----------KRGVVVAGRM-SAAEGKKVAEWAQTLGWPLIGDVLS------------ 254
Query: 135 ETEQNI----LFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYIL 190
+T Q + L+L + ++V + Q +++Q+GS +T KRI Q C P Y L
Sbjct: 255 QTGQPLQCADLWLGN------GKAVSELAQAQIVVQLGSSLTGKRILQWQATCEPDEYWL 308
Query: 191 VDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQ- 249
VDN P R DP+ R+ +++ ++ L++ + W + + L S ++Q
Sbjct: 309 VDNLPGRLDPAQHRGRRLLASVERW----LELHPAEKRQPWATVIPEL-----SRQAWQA 359
Query: 250 -ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSE 308
+ ++ E +A + R L LFVGNS+ +R +D + L +
Sbjct: 360 AVASNEPFGEAQLAQRIRRYLPEQGQLFVGNSLVVRLIDALAQ-------------LPAG 406
Query: 309 FPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKR 368
+P V NRGASGIDGL++TA G + L +VGD+S L+D N LA+L+Q
Sbjct: 407 YP-----VYSNRGASGIDGLIATAAGVQRASARPTLAIVGDLSALYDLNSLALLRQ--AS 459
Query: 369 KPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKV 428
P++++V+NN+GG IFS+LP + E R Q++ ++ + GL + +
Sbjct: 460 APLVLIVVNNNGGQIFSMLPT-PQDERR---QFYLMPQDVDFSHAAAMFGLAYHRPDDWQ 515
Query: 429 ELEEALSMSQHLGTDRVIEVE-SCIDANATFHSMLRKFAR 467
L+EAL+ + VIE+ + D T +L + +R
Sbjct: 516 SLDEALAGAWRRAGATVIELAVNETDGTQTLQQLLAQVSR 555
>sp|Q3YZU2|MEND_SHISS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella sonnei (strain Ss046) GN=menD PE=3
SV=1
Length = 556
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 204/450 (45%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH +S L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLILIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE AL+ +
Sbjct: 469 NNGGQIFSLLPTPKSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETALADA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>sp|A4WCP9|MEND_ENT38 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Enterobacter sp. (strain 638) GN=menD PE=3
SV=1
Length = 556
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 216/453 (47%), Gaps = 71/453 (15%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPL----DNSPKHWMSSCLKGLDIWTSSIEPFT 57
+++TLD A+ + +G +HINCPF EPL +++ W + L W S +P+
Sbjct: 148 LVSTLDHAM---GTLRHGALHINCPFAEPLYGELNDTGVEWQQT----LGDWWQSDKPW- 199
Query: 58 KYIQVQHSHACKSYTYCQMAEVLELVQGVNK-GLLLVGAVHNEDEIWAVLHLARHIRWPV 116
++ T+ Q + + K G++L G + E V A+ + WP+
Sbjct: 200 ----------LRAQTHLQSGQQRDWFHWRQKRGVILAGRM-TAAEGKQVAEWAKTLGWPL 248
Query: 117 VADILSGLRLRKLLASFLETEQNILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKR 175
+ D+LS +T Q + D L +A ++V + + ++IQ+GS +T KR
Sbjct: 249 IGDVLS------------QTGQPLPCADLWLGNA---KAVTELARAQIVIQLGSSLTGKR 293
Query: 176 ISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFL 235
+ Q C P Y LVD+ R DP+H R+ STI + L+ + W + +
Sbjct: 294 VLQWQSTCEPEEYWLVDSLEGRLDPAHHRGRRLVSTIGDW----LEDHPAEKRQAWATDI 349
Query: 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTT 295
L + A +++ Q C + E +AH + + L LFVGNS+ +R +D +
Sbjct: 350 PELSRL-AWDLTTQQCERFG--EAELAHRIRQYLPDQGQLFVGNSLVVRLIDALSK---- 402
Query: 296 CTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD 355
L + +P V NRGASGIDGL+STA G K L +VGD+S L+D
Sbjct: 403 ---------LPAGYP-----VYSNRGASGIDGLISTAAGVQRASTKPTLAIVGDLSALYD 448
Query: 356 TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL 415
N LA+L+Q P +++V+NN+GG IFSLLP R ++ N+ ++
Sbjct: 449 LNALALLRQ--ASAPFVLIVVNNNGGQIFSLLPTPQSERER----FYLMPQNVQFEHAAA 502
Query: 416 AHGLNHVQVKTKVELEEALSMSQHLGTDRVIEV 448
L + + ++ EL++A+S + +IE+
Sbjct: 503 MFSLKYHRPQSWSELDDAMSTAWRQPGATLIEL 535
>sp|B7LM66|MEND_ESCF3 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=menD PE=3 SV=1
Length = 556
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 208/452 (46%), Gaps = 63/452 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQ--ICADYS 255
DP+H HR + I D+L ++ + WC +++ +E + Q I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWC-----IEIPRLAEQAMQAVIARRDA 366
Query: 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315
E +AH +S L LFVGNS+ +R +D + L + +P
Sbjct: 367 FGEAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP----- 408
Query: 316 VAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375
V NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V
Sbjct: 409 VYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIV 466
Query: 376 INNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALS 435
+NN+GG IFSLLP R ++ N+ ++ L + + + ELE AL+
Sbjct: 467 VNNNGGQIFSLLPTPKSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETALA 522
Query: 436 MSQHLGTDRVIE-VESCIDANATFHSMLRKFA 466
+ T VIE V + D T +L + +
Sbjct: 523 DAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>sp|Q089C0|MEND_SHEFN 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shewanella frigidimarina (strain NCIMB 400)
GN=menD PE=3 SV=1
Length = 579
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 218/462 (47%), Gaps = 68/462 (14%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPL-----------DNSPKHWMSSCLKGLDIWT 50
+L+T+D A+ ++ + PVHINC +REPL + S+ L L+ W
Sbjct: 150 LLSTIDHAL----ANQHQPVHINCMYREPLYPTELVTLAHVKKTASVTTSTYLAPLNQWF 205
Query: 51 SSIEPFTKYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLAR 110
+ +P T+Y + + + T ++ V G KG+++VG + ED ++ LA+
Sbjct: 206 ENTKPLTRYASLTSAELPTTDT------LMRFVHG--KGVIVVGTLAPEDNPQQIVALAQ 257
Query: 111 HIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-ESVKDWIQFDVIIQIGS 169
+ WPV+ D S LR Q+ + H+D LL+ ++ K Q + I+ G
Sbjct: 258 KLGWPVLVDAQSQLR------------QHPGVIGHVDQLLLNPKANKQLEQAERILVFGG 305
Query: 170 RITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-HRS 228
R SKR+ Q I + +Y V H R DP+H Q++ VQ V Q+P RS
Sbjct: 306 RFISKRLLQYIAQQSWHSYWHVVKHGDRLDPTHQSKEFYQAS-VQAV-----CQLPWPRS 359
Query: 229 SK--WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDL 286
S+ W L L+ + S QI + + E V ++ A + LF+GNS+ IR
Sbjct: 360 SQANWALQLLPLNESLESLFKQQI-DNTTFGEAQVVRAIALAQSDQHILFIGNSLPIRLY 418
Query: 287 DMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCV 346
DMY T+T A + NRGASGIDGL++TA G A N V
Sbjct: 419 DMYA---PIATNTPA--------------IYTNRGASGIDGLIATACGVAADKNAPTTLV 461
Query: 347 VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406
+GD+S LHD N LA+LKQ +P ++++INN GG IF+LLP+ + + + + ++ +H
Sbjct: 462 MGDLSCLHDFNSLALLKQMT--QPFVLVIINNDGGNIFNLLPVPNES---LRNDFYRLSH 516
Query: 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEV 448
+ GL + Q +A + VIEV
Sbjct: 517 GLEFGYGAAMFGLAYRQADDIESFNQAYQEAFEFNCASVIEV 558
>sp|A8FGK9|MEND_BACP2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Bacillus pumilus (strain SAFR-032) GN=menD
PE=3 SV=1
Length = 580
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 208/464 (44%), Gaps = 49/464 (10%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
+ T A H + P GPV IN P REPL + SI PF +
Sbjct: 148 VQTAAARANHMSMQEPKGPVQINVPLREPL----------------LPDLSIHPFDREET 191
Query: 62 VQHSHACKSYTYCQ---MAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVA 118
+ Y ++E++ ++ KGL++ G +H + E AVL L++ + P++A
Sbjct: 192 DRKKVLATGQAYPNDDALSEIVTVMNRSKKGLIVCGELHTQKEKEAVLRLSKDLHLPILA 251
Query: 119 DILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQ 178
D LS LR E L +D D L E+++ + D++I+ G SK + +
Sbjct: 252 DPLSHLRNGH--------EHAELIIDAYDSLLKDEALQQHLLPDMVIRFGPMPVSKPLFK 303
Query: 179 MIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238
+E+ I+VD DP S ++ I+S + FVD ++ + + + +
Sbjct: 304 WLEKHAEVNQIVVDAAGGFRDPGLSASYIIESDVAAFVDEVVNRADQREDTSFLNRWQHA 363
Query: 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTH 298
+ + S D S E +V +L L S LF+GNSM IRD+D +
Sbjct: 364 NSSFRTHASHYSDEDLSF-EGNVYRQLQHLLPKESVLFIGNSMPIRDVDTF--------- 413
Query: 299 TVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNG 358
E + R+ NRGA+GIDG++STA+G + V V+GD+SF HD NG
Sbjct: 414 --------FEAQSKPFRMMANRGANGIDGVVSTALGTYAALKQPVTLVIGDLSFYHDMNG 465
Query: 359 LAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHG 418
L L ++ P+ ++++NN GG IFS LP A +E ++ F T ++ + +G
Sbjct: 466 L--LAAKLMDIPLTVVLLNNDGGGIFSFLPQA--SEEPYYEKLFGTPTGLNFEYASKLYG 521
Query: 419 LNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462
+ + TK E + +IE+E+ + + H +
Sbjct: 522 GTYSKPSTKQEFHDVYKAHIEEPGLHLIEIETDRHSRVSKHRQM 565
>sp|A0KFN8|MEND_AERHH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=menD PE=3 SV=1
Length = 576
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 217/455 (47%), Gaps = 59/455 (12%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHW-MSSCLKGLDIWTSSIEPFTKY 59
+L+++D A+ +P GPVH NC + EPL + S+ L L W S EP++ +
Sbjct: 155 FVLSSVDQALAQQARTP-GPVHFNCMYPEPLYPGDAYLDFSAYLAPLGDWLRSSEPWSPW 213
Query: 60 IQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVAD 119
Q C+ + +QG +GL++ G + + + AV LA + WP++AD
Sbjct: 214 QLTQAPCPCQPD--------WDELQG-KRGLIVAGRIQDPVQAKAVAALAERLGWPLLAD 264
Query: 120 ILSGLRLRKLLASFLETEQNILFLDHLDHALL-SESVKDWIQFDVIIQIGSRITSKRISQ 178
+ S LR +N++ H D AL S V + + +V++Q G+R+ SKR+ Q
Sbjct: 265 LQSQLRF---------DGRNLV---HADLALQHSGFVAELARAEVLLQFGARLISKRLGQ 312
Query: 179 MIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238
I++ Y L+D P R DP + + R+ F V PH W A
Sbjct: 313 FIKQQPWQAYWLIDPQPARLDPDYRLRRRLLCDPAAFA-AAHPVAHPHL--PWHRL--AE 367
Query: 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTH 298
S+ C +S E V H L++ + LFVGNSM R +DM G +
Sbjct: 368 RQQAVSQQVRSACERFS--ELGVCHRLNQLIRGQ--LFVGNSMPARLMDMLGEAGKGPS- 422
Query: 299 TVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFA----VGCNKHVLCVVGDISFLH 354
RV NRGASGIDGL++TA GFA G N+ ++GD+S LH
Sbjct: 423 ----------------RVMTNRGASGIDGLIATAYGFAQSVQPGSNEPTTLLLGDLSALH 466
Query: 355 DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLC 414
D N LA+L + +P++++++NN GG+IF +LP+ T+ +L+ Y+ H + ++
Sbjct: 467 DLNSLALLGK--SSRPLVVILLNNDGGSIFRMLPVP--TQDALLETYYCLPHGLHFEHAA 522
Query: 415 LAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVE 449
GL++ + + E + + G +IE++
Sbjct: 523 AMFGLHYRTPASLADFERDYTTALEKGVT-LIEIK 556
>sp|B7NNU4|MEND_ECO7I 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=menD PE=3 SV=1
Length = 556
Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 203/450 (45%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QTQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH +S L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE AL +
Sbjct: 469 NNGGQIFSLLPTPKNERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETALVDA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>sp|Q31YJ3|MEND_SHIBS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Shigella boydii serotype 4 (strain Sb227)
GN=menD PE=3 SV=1
Length = 556
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 203/450 (45%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH +S L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE A + +
Sbjct: 469 NNGGQIFSLLPTPQSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETAFADA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>sp|Q8FFL1|MEND_ECOL6 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=menD PE=3 SV=2
Length = 556
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 203/450 (45%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGISWQQRLGDWWQDDKPWLREAPRRESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH +S L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE L +
Sbjct: 469 NNGGQIFSLLPTPKSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETTLVDA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
>sp|A1ADB6|MEND_ECOK1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Escherichia coli O1:K1 / APEC GN=menD PE=3
SV=2
Length = 556
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 203/450 (45%), Gaps = 59/450 (13%)
Query: 19 GPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAE 78
G VHINCPF EPL S + L W +P+ + + S + + + +
Sbjct: 162 GGVHINCPFAEPLYGEMDDTGISWQQRLGDWWQDDKPWLREAPRRESEKQRDWFFWRQ-- 219
Query: 79 VLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQ 138
+G+++ G + E+ L A+ + WP++ D+LS +T Q
Sbjct: 220 --------KRGVVVAGRMSAEEGKKVAL-WAQTLGWPLIGDVLS------------QTGQ 258
Query: 139 NILFLD-HLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCR 197
+ D L +A + ++ Q +++Q+GS +T KR+ Q C P Y +VD+ R
Sbjct: 259 PLPCADLWLGNAKATSELQ---QAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGR 315
Query: 198 HDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLT 257
DP+H HR + I D+L ++ + WC + L + I +
Sbjct: 316 LDPAH---HRGRRLIANIADWL-ELHPAEKRQPWCVEIPRLAEQAMQAV---IARRDAFG 368
Query: 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317
E +AH +S L LFVGNS+ +R +D + L + +P V
Sbjct: 369 EAQLAHRISDYLPEQGQLFVGNSLVVRLIDALSQ-------------LPAGYP-----VY 410
Query: 318 GNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVIN 377
NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q P++++V+N
Sbjct: 411 SNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQ--VSAPLVLIVVN 468
Query: 378 NHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMS 437
N+GG IFSLLP R ++ N+ ++ L + + + ELE L +
Sbjct: 469 NNGGQIFSLLPTPKSERER----FYLMPQNVHFEHAAAMFELKYHRPQNWQELETTLVDA 524
Query: 438 QHLGTDRVIE-VESCIDANATFHSMLRKFA 466
T VIE V + D T +L + +
Sbjct: 525 WRTPTTTVIEMVVNDTDGAQTLQQLLAQVS 554
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,598,641
Number of Sequences: 539616
Number of extensions: 14973584
Number of successful extensions: 36475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 34693
Number of HSP's gapped (non-prelim): 617
length of query: 983
length of database: 191,569,459
effective HSP length: 127
effective length of query: 856
effective length of database: 123,038,227
effective search space: 105320722312
effective search space used: 105320722312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)