Query 041113
Match_columns 983
No_of_seqs 622 out of 5204
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02980 2-oxoglutarate decarb 100.0 4E-127 9E-132 1243.7 97.4 972 2-981 441-1414(1655)
2 COG0028 IlvB Thiamine pyrophos 100.0 3.8E-63 8.3E-68 577.8 30.5 397 1-453 134-533 (550)
3 TIGR01504 glyox_carbo_lig glyo 100.0 6.2E-59 1.3E-63 555.8 25.2 410 1-462 137-566 (588)
4 PRK06154 hypothetical protein; 100.0 7.1E-58 1.5E-62 544.2 30.0 395 2-454 150-558 (565)
5 PRK08979 acetolactate synthase 100.0 3.7E-58 8.1E-63 549.3 27.0 401 1-454 137-549 (572)
6 TIGR02534 mucon_cyclo muconate 100.0 4.4E-57 9.5E-62 510.8 34.1 355 495-895 1-367 (368)
7 PRK07979 acetolactate synthase 100.0 5.3E-58 1.2E-62 548.9 27.9 402 1-455 137-552 (574)
8 cd03318 MLE Muconate Lactonizi 100.0 5.8E-57 1.2E-61 510.2 33.7 352 494-891 1-364 (365)
9 PRK09107 acetolactate synthase 100.0 1.4E-57 3E-62 545.0 27.8 400 1-454 144-557 (595)
10 PRK07282 acetolactate synthase 100.0 1.2E-57 2.6E-62 543.7 27.2 397 1-455 143-545 (566)
11 PRK06965 acetolactate synthase 100.0 1.6E-57 3.6E-62 544.8 27.9 400 1-455 154-566 (587)
12 PRK06725 acetolactate synthase 100.0 3.7E-57 8.1E-62 538.6 29.1 399 1-455 147-549 (570)
13 PRK06048 acetolactate synthase 100.0 3.5E-57 7.6E-62 540.4 28.7 399 1-455 140-542 (561)
14 PRK07418 acetolactate synthase 100.0 2.7E-57 6E-62 545.9 27.3 400 1-455 155-563 (616)
15 PRK06466 acetolactate synthase 100.0 4E-57 8.7E-62 541.3 27.0 404 1-455 137-552 (574)
16 PRK08978 acetolactate synthase 100.0 3.8E-57 8.2E-62 539.7 26.3 392 1-455 133-529 (548)
17 PRK11269 glyoxylate carboligas 100.0 6.9E-57 1.5E-61 540.5 27.5 402 2-455 139-560 (591)
18 PRK08527 acetolactate synthase 100.0 8.2E-57 1.8E-61 537.4 27.0 401 1-456 136-543 (563)
19 PLN02470 acetolactate synthase 100.0 1E-56 2.3E-61 538.3 27.8 404 1-454 146-560 (585)
20 PRK08155 acetolactate synthase 100.0 1.4E-56 3E-61 536.2 28.1 399 1-456 146-548 (564)
21 TIGR02418 acolac_catab acetola 100.0 1.7E-56 3.6E-61 533.1 28.5 398 1-457 131-536 (539)
22 PRK07789 acetolactate synthase 100.0 1E-56 2.3E-61 540.5 26.7 405 1-455 164-580 (612)
23 PRK08617 acetolactate synthase 100.0 2E-56 4.3E-61 533.9 28.6 403 1-461 137-546 (552)
24 PRK08611 pyruvate oxidase; Pro 100.0 2.9E-56 6.3E-61 532.9 29.5 416 2-478 139-557 (576)
25 PRK06456 acetolactate synthase 100.0 2.1E-56 4.5E-61 536.0 28.3 402 1-455 138-549 (572)
26 PRK08273 thiamine pyrophosphat 100.0 3.5E-56 7.5E-61 534.5 30.2 403 2-454 139-549 (597)
27 PRK08322 acetolactate synthase 100.0 2.7E-56 6E-61 533.2 29.1 398 2-459 134-536 (547)
28 PRK07710 acetolactate synthase 100.0 2.1E-56 4.5E-61 534.9 28.0 398 2-455 149-552 (571)
29 CHL00099 ilvB acetohydroxyacid 100.0 2.7E-56 5.9E-61 534.1 28.3 402 1-455 146-559 (585)
30 cd03323 D-glucarate_dehydratas 100.0 3.7E-55 8.1E-60 495.0 34.3 356 494-895 1-390 (395)
31 TIGR02720 pyruv_oxi_spxB pyruv 100.0 8.3E-56 1.8E-60 528.9 30.4 401 2-459 134-540 (575)
32 TIGR03457 sulphoacet_xsc sulfo 100.0 8.4E-56 1.8E-60 530.5 28.0 399 1-457 134-563 (579)
33 PRK05858 hypothetical protein; 100.0 1.3E-55 2.8E-60 524.7 28.6 391 1-455 137-534 (542)
34 PRK09124 pyruvate dehydrogenas 100.0 2.5E-55 5.5E-60 526.3 31.3 393 2-456 137-535 (574)
35 cd03328 MR_like_3 Mandelate ra 100.0 6.8E-55 1.5E-59 487.8 31.0 339 494-885 1-351 (352)
36 PRK06546 pyruvate dehydrogenas 100.0 6.8E-55 1.5E-59 520.7 31.3 392 1-454 136-533 (578)
37 PRK06276 acetolactate synthase 100.0 2E-55 4.4E-60 527.3 26.7 402 1-454 133-546 (586)
38 cd03321 mandelate_racemase Man 100.0 1.1E-54 2.4E-59 488.3 30.7 347 493-893 1-354 (355)
39 cd03317 NAAAR N-acylamino acid 100.0 4.6E-54 1E-58 484.9 35.5 342 498-891 1-353 (354)
40 TIGR03254 oxalate_oxc oxalyl-C 100.0 1E-54 2.3E-59 518.8 30.4 400 1-459 137-546 (554)
41 PRK14017 galactonate dehydrata 100.0 2.8E-54 6.2E-59 489.3 32.2 342 493-895 1-362 (382)
42 PRK06882 acetolactate synthase 100.0 5.3E-55 1.1E-59 524.1 27.6 400 2-455 138-550 (574)
43 TIGR00118 acolac_lg acetolacta 100.0 7.6E-55 1.6E-59 521.0 27.2 400 1-455 134-540 (558)
44 PRK15072 bifunctional D-altron 100.0 1.3E-53 2.8E-58 485.8 35.5 346 493-897 1-388 (404)
45 PRK07449 2-succinyl-5-enolpyru 100.0 2.7E-53 5.9E-58 509.2 39.5 409 8-466 154-564 (568)
46 PRK07525 sulfoacetaldehyde ace 100.0 1.4E-54 3E-59 520.3 27.6 396 2-454 139-565 (588)
47 PLN02573 pyruvate decarboxylas 100.0 7.8E-55 1.7E-59 518.9 24.4 405 1-469 156-570 (578)
48 TIGR03393 indolpyr_decarb indo 100.0 7.7E-55 1.7E-59 517.7 22.8 391 2-462 141-538 (539)
49 PRK08199 thiamine pyrophosphat 100.0 2.7E-54 5.8E-59 515.7 27.5 396 1-455 141-542 (557)
50 PRK06457 pyruvate dehydrogenas 100.0 6.4E-54 1.4E-58 511.0 30.5 385 2-455 135-523 (549)
51 PRK09259 putative oxalyl-CoA d 100.0 5.2E-54 1.1E-58 513.9 29.1 398 1-458 144-553 (569)
52 PRK07524 hypothetical protein; 100.0 4.3E-54 9.3E-59 511.9 26.8 390 1-453 137-531 (535)
53 cd03325 D-galactonate_dehydrat 100.0 4.4E-53 9.4E-58 474.3 33.3 338 494-884 1-352 (352)
54 PRK07064 hypothetical protein; 100.0 3.8E-54 8.3E-59 514.4 26.1 386 2-452 140-529 (544)
55 cd03326 MR_like_1 Mandelate ra 100.0 7.4E-53 1.6E-57 473.3 34.9 357 494-894 1-383 (385)
56 PRK06112 acetolactate synthase 100.0 1.9E-53 4.1E-58 510.6 32.1 405 2-458 145-567 (578)
57 KOG1185 Thiamine pyrophosphate 100.0 2.3E-53 5E-58 453.0 27.5 405 1-456 146-565 (571)
58 cd03324 rTSbeta_L-fuconate_deh 100.0 2.2E-52 4.8E-57 472.7 36.1 365 493-883 1-414 (415)
59 TIGR03394 indol_phenyl_DC indo 100.0 5.9E-54 1.3E-58 507.4 23.0 391 1-464 139-534 (535)
60 KOG4166 Thiamine pyrophosphate 100.0 1.2E-53 2.7E-58 445.0 21.0 400 1-454 224-650 (675)
61 cd03322 rpsA The starvation se 100.0 2.4E-52 5.2E-57 469.4 32.9 335 494-896 1-344 (361)
62 cd03316 MR_like Mandelate race 100.0 3.2E-52 7E-57 471.6 32.7 341 494-882 1-357 (357)
63 COG4948 L-alanine-DL-glutamate 100.0 1.7E-52 3.7E-57 474.5 30.3 361 493-896 1-369 (372)
64 cd03329 MR_like_4 Mandelate ra 100.0 4.3E-52 9.3E-57 469.6 32.6 349 494-892 1-367 (368)
65 cd03327 MR_like_2 Mandelate ra 100.0 4.7E-52 1E-56 463.8 29.3 318 527-884 11-341 (341)
66 PRK08266 hypothetical protein; 100.0 2.1E-52 4.5E-57 498.7 26.9 384 2-456 142-530 (542)
67 TIGR03247 glucar-dehydr glucar 100.0 9.9E-51 2.1E-55 461.3 34.4 355 493-895 4-407 (441)
68 PRK08327 acetolactate synthase 100.0 2.4E-51 5.3E-56 489.8 30.0 390 1-452 154-568 (569)
69 TIGR01928 menC_lowGC/arch o-su 100.0 6.3E-51 1.4E-55 451.0 30.8 317 501-869 1-324 (324)
70 PRK07092 benzoylformate decarb 100.0 2.1E-51 4.5E-56 487.9 24.3 382 2-451 145-530 (530)
71 PRK15129 L-Ala-D/L-Glu epimera 100.0 2.4E-49 5.2E-54 437.8 32.0 286 496-827 2-290 (321)
72 PRK15440 L-rhamnonate dehydrat 100.0 2.8E-49 6.1E-54 444.4 29.7 315 524-890 55-387 (394)
73 cd03319 L-Ala-DL-Glu_epimerase 100.0 1.2E-48 2.6E-53 433.8 31.6 300 497-830 1-304 (316)
74 cd03315 MLE_like Muconate lact 100.0 6.7E-48 1.4E-52 416.8 30.3 254 498-831 1-257 (265)
75 PRK12474 hypothetical protein; 100.0 7.4E-49 1.6E-53 464.2 24.8 365 1-450 138-518 (518)
76 PRK07586 hypothetical protein; 100.0 1.8E-48 3.9E-53 461.9 25.1 371 1-450 134-514 (514)
77 cd03320 OSBS o-Succinylbenzoat 100.0 3.2E-47 7E-52 409.9 28.1 250 499-832 2-254 (263)
78 TIGR01927 menC_gamma/gm+ o-suc 100.0 1.3E-46 2.9E-51 411.9 31.8 278 501-831 1-283 (307)
79 PRK02714 O-succinylbenzoate sy 100.0 1.1E-46 2.5E-51 415.4 29.8 297 497-862 4-308 (320)
80 COG3961 Pyruvate decarboxylase 100.0 2.1E-47 4.5E-52 414.1 22.2 398 2-468 145-552 (557)
81 PRK05105 O-succinylbenzoate sy 100.0 6E-46 1.3E-50 409.5 32.8 297 496-864 2-302 (322)
82 COG1165 MenD 2-succinyl-6-hydr 100.0 1.2E-44 2.7E-49 397.8 36.9 411 4-468 151-563 (566)
83 COG3962 Acetolactate synthase 100.0 5.7E-45 1.2E-49 385.4 28.0 404 2-457 162-581 (617)
84 TIGR01502 B_methylAsp_ase meth 100.0 2.1E-43 4.5E-48 393.3 30.1 299 509-831 36-375 (408)
85 cd03314 MAL Methylaspartate am 100.0 8.8E-44 1.9E-48 392.6 25.2 287 525-831 12-339 (369)
86 COG3960 Glyoxylate carboligase 100.0 4E-43 8.6E-48 356.5 19.1 403 2-457 139-562 (592)
87 cd00308 enolase_like Enolase-s 100.0 2.6E-42 5.6E-47 364.8 22.4 221 498-833 1-224 (229)
88 KOG1184 Thiamine pyrophosphate 100.0 3E-39 6.4E-44 348.9 22.2 402 2-468 145-556 (561)
89 PRK02901 O-succinylbenzoate sy 100.0 7E-37 1.5E-41 334.6 30.4 224 641-897 76-306 (327)
90 PRK00077 eno enolase; Provisio 100.0 2E-33 4.2E-38 319.8 26.7 306 493-831 2-383 (425)
91 TIGR00173 menD 2-succinyl-5-en 100.0 3.3E-33 7.2E-38 323.0 27.5 292 2-338 140-432 (432)
92 TIGR01060 eno phosphopyruvate 100.0 1.1E-32 2.3E-37 313.8 27.0 288 525-831 15-384 (425)
93 cd03313 enolase Enolase: Enola 100.0 2.6E-32 5.7E-37 309.0 23.0 290 525-831 13-383 (408)
94 cd02013 TPP_Xsc_like Thiamine 100.0 6.7E-33 1.4E-37 284.5 14.2 184 254-462 2-190 (196)
95 cd02006 TPP_Gcl Thiamine pyrop 100.0 1.3E-32 2.8E-37 284.4 13.4 183 253-455 5-198 (202)
96 cd02009 TPP_SHCHC_synthase Thi 100.0 1.6E-31 3.4E-36 269.4 15.5 174 257-451 2-175 (175)
97 cd02010 TPP_ALS Thiamine pyrop 100.0 2.1E-31 4.5E-36 268.6 12.8 171 259-455 2-174 (177)
98 cd02003 TPP_IolD Thiamine pyro 100.0 1.4E-31 3.1E-36 276.7 10.5 183 259-463 2-196 (205)
99 cd02015 TPP_AHAS Thiamine pyro 100.0 5.2E-31 1.1E-35 269.0 13.7 175 256-455 1-178 (186)
100 cd02005 TPP_PDC_IPDC Thiamine 100.0 1.7E-30 3.7E-35 263.4 14.8 175 255-458 1-181 (183)
101 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 1.1E-29 2.5E-34 256.0 15.5 171 258-451 1-172 (172)
102 cd02014 TPP_POX Thiamine pyrop 100.0 8.1E-30 1.8E-34 258.1 13.3 174 255-454 1-176 (178)
103 PLN00191 enolase 100.0 3.6E-27 7.8E-32 266.6 28.1 300 493-831 26-415 (457)
104 PRK06163 hypothetical protein; 100.0 2.3E-28 5E-33 249.1 15.9 164 254-455 11-177 (202)
105 cd02002 TPP_BFDC Thiamine pyro 99.9 1E-27 2.2E-32 243.7 13.4 174 256-450 1-178 (178)
106 cd02001 TPP_ComE_PpyrDC Thiami 99.9 2.8E-27 6E-32 233.0 16.0 155 259-453 2-157 (157)
107 TIGR03846 sulfopy_beta sulfopy 99.9 7.3E-27 1.6E-31 235.2 16.6 157 259-455 2-160 (181)
108 COG1441 MenC O-succinylbenzoat 99.9 3.3E-26 7.2E-31 221.5 20.2 294 497-864 3-301 (321)
109 cd03371 TPP_PpyrDC Thiamine py 99.9 4.8E-26 1E-30 231.0 16.9 164 259-456 2-168 (188)
110 PF02775 TPP_enzyme_C: Thiamin 99.9 6E-27 1.3E-31 231.5 9.7 146 286-448 5-153 (153)
111 PTZ00081 enolase; Provisional 99.9 3.6E-24 7.7E-29 241.6 29.6 307 493-831 2-401 (439)
112 cd02008 TPP_IOR_alpha Thiamine 99.9 1.7E-25 3.6E-30 226.4 15.2 163 256-451 10-177 (178)
113 cd03375 TPP_OGFOR Thiamine pyr 99.9 7.3E-25 1.6E-29 223.8 16.5 165 260-453 13-186 (193)
114 cd03372 TPP_ComE Thiamine pyro 99.9 9.2E-25 2E-29 220.2 15.2 156 259-455 2-159 (179)
115 cd02018 TPP_PFOR Thiamine pyro 99.9 1.4E-24 3E-29 228.3 17.1 181 255-454 10-206 (237)
116 cd03376 TPP_PFOR_porB_like Thi 99.9 2.4E-24 5.1E-29 225.9 16.7 178 255-454 10-203 (235)
117 cd00568 TPP_enzymes Thiamine p 99.9 2.9E-24 6.3E-29 216.6 12.2 166 261-450 2-168 (168)
118 PRK09628 oorB 2-oxoglutarate-a 99.9 3E-23 6.4E-28 220.7 15.5 172 254-454 24-204 (277)
119 PRK05778 2-oxoglutarate ferred 99.9 3.2E-22 6.9E-27 215.0 15.7 168 256-452 28-204 (301)
120 TIGR03297 Ppyr-DeCO2ase phosph 99.9 3.9E-22 8.4E-27 220.9 16.8 167 256-456 172-341 (361)
121 PRK11867 2-oxoglutarate ferred 99.9 9.4E-22 2E-26 210.9 15.7 170 255-454 22-205 (286)
122 PRK11869 2-oxoacid ferredoxin 99.9 2.4E-21 5.1E-26 205.5 14.8 158 268-454 32-196 (280)
123 PRK11866 2-oxoacid ferredoxin 99.8 9.3E-21 2E-25 201.2 15.8 170 256-454 13-195 (279)
124 TIGR02177 PorB_KorB 2-oxoacid: 99.8 1.3E-20 2.9E-25 200.5 13.1 158 268-454 25-189 (287)
125 PF00205 TPP_enzyme_M: Thiamin 99.8 7.3E-22 1.6E-26 191.3 3.0 135 76-219 1-137 (137)
126 TIGR03336 IOR_alpha indolepyru 99.8 2.5E-20 5.4E-25 223.1 15.8 168 255-454 361-533 (595)
127 PF02746 MR_MLE_N: Mandelate r 99.7 4.6E-18 9.9E-23 159.5 10.4 115 496-628 2-117 (117)
128 TIGR03181 PDH_E1_alph_x pyruva 99.7 2.1E-16 4.6E-21 175.4 13.3 150 317-485 118-319 (341)
129 TIGR03182 PDH_E1_alph_y pyruva 99.6 7.2E-16 1.6E-20 169.5 13.1 151 316-485 105-306 (315)
130 COG0148 Eno Enolase [Carbohydr 99.6 1.2E-14 2.5E-19 154.5 21.4 297 494-830 3-379 (423)
131 CHL00149 odpA pyruvate dehydro 99.6 2E-15 4.3E-20 167.0 13.6 147 318-485 125-331 (341)
132 cd02012 TPP_TK Thiamine pyroph 99.6 3.5E-15 7.6E-20 160.0 11.7 119 318-454 102-230 (255)
133 cd02000 TPP_E1_PDC_ADC_BCADC T 99.6 7.5E-15 1.6E-19 160.6 14.3 118 316-452 99-229 (293)
134 PRK08350 hypothetical protein; 99.6 3.2E-13 7E-18 143.0 25.8 285 493-830 2-305 (341)
135 PF01188 MR_MLE: Mandelate rac 99.6 2.7E-15 5.9E-20 124.9 7.8 65 690-756 1-67 (67)
136 PF13378 MR_MLE_C: Enolase C-t 99.6 2.4E-15 5.1E-20 139.9 6.0 102 756-882 1-111 (111)
137 PLN02374 pyruvate dehydrogenas 99.5 1.7E-13 3.6E-18 154.9 13.8 150 316-485 189-397 (433)
138 PRK05899 transketolase; Review 99.4 3.5E-13 7.5E-18 162.9 11.9 117 318-453 115-250 (624)
139 PTZ00378 hypothetical protein; 99.3 2.6E-10 5.7E-15 127.9 20.4 305 493-831 49-450 (518)
140 cd02007 TPP_DXS Thiamine pyrop 99.2 2.8E-11 6.2E-16 123.7 10.6 111 318-453 72-192 (195)
141 PRK11865 pyruvate ferredoxin o 99.2 2.6E-10 5.7E-15 122.2 18.3 177 255-455 23-215 (299)
142 PRK05444 1-deoxy-D-xylulose-5- 99.2 1.1E-10 2.3E-15 140.0 11.2 123 317-455 113-246 (580)
143 PRK11864 2-ketoisovalerate fer 99.1 1.1E-09 2.4E-14 117.3 17.3 175 256-454 24-210 (300)
144 PRK00945 acetyl-CoA decarbonyl 99.1 2.6E-10 5.6E-15 111.4 10.0 111 77-192 25-141 (171)
145 KOG2670 Enolase [Carbohydrate 99.1 1.9E-09 4.1E-14 111.0 15.9 275 525-814 17-375 (433)
146 TIGR00315 cdhB CO dehydrogenas 99.1 5E-10 1.1E-14 108.7 10.0 90 77-171 18-111 (162)
147 COG3799 Mal Methylaspartate am 98.9 3.6E-08 7.9E-13 100.3 16.3 289 525-831 50-376 (410)
148 KOG4178 Soluble epoxide hydrol 98.8 1.3E-08 2.7E-13 108.3 8.5 69 908-983 21-90 (322)
149 COG1071 AcoA Pyruvate/2-oxoglu 98.8 5.2E-08 1.1E-12 106.0 12.5 150 318-485 133-334 (358)
150 PF00676 E1_dh: Dehydrogenase 98.7 3.9E-08 8.5E-13 107.6 10.9 151 317-485 97-299 (300)
151 PF07476 MAAL_C: Methylasparta 98.7 4.5E-08 9.7E-13 96.7 9.7 181 642-831 4-216 (248)
152 PRK12571 1-deoxy-D-xylulose-5- 98.7 2.7E-08 5.8E-13 119.9 10.1 131 319-454 121-286 (641)
153 PRK00870 haloalkane dehalogena 98.7 5.3E-08 1.1E-12 108.1 9.9 70 909-981 19-90 (302)
154 COG1013 PorB Pyruvate:ferredox 98.7 3.3E-07 7.2E-12 98.9 15.6 129 322-454 71-207 (294)
155 PLN02824 hydrolase, alpha/beta 98.7 3.7E-08 7.9E-13 108.9 7.4 64 910-981 9-72 (294)
156 PRK12315 1-deoxy-D-xylulose-5- 98.7 6.2E-07 1.4E-11 107.2 18.3 127 319-455 111-247 (581)
157 PLN02269 Pyruvate dehydrogenas 98.6 1.8E-07 3.9E-12 104.2 12.6 148 317-485 134-333 (362)
158 cd02932 OYE_YqiM_FMN Old yello 98.6 1.2E-07 2.7E-12 106.2 11.2 122 656-782 153-318 (336)
159 PRK03592 haloalkane dehalogena 98.6 9E-08 2E-12 105.8 8.3 53 925-982 19-71 (295)
160 PLN02679 hydrolase, alpha/beta 98.6 1.2E-07 2.6E-12 107.7 8.2 44 938-981 88-131 (360)
161 PLN02790 transketolase 98.5 2.5E-07 5.4E-12 112.0 10.9 117 317-452 101-239 (654)
162 PRK03204 haloalkane dehalogena 98.5 1.6E-07 3.4E-12 103.4 8.3 64 909-981 14-77 (286)
163 TIGR02240 PHA_depoly_arom poly 98.5 1.6E-07 3.4E-12 102.8 8.4 44 938-981 25-68 (276)
164 PLN03084 alpha/beta hydrolase 98.5 1.6E-07 3.4E-12 106.7 8.2 56 923-981 115-170 (383)
165 cd02801 DUS_like_FMN Dihydrour 98.4 1.5E-06 3.3E-11 92.3 12.0 134 642-783 53-212 (231)
166 PTZ00089 transketolase; Provis 98.4 1.1E-06 2.3E-11 106.7 11.4 116 318-452 113-250 (661)
167 PF13292 DXP_synthase_N: 1-deo 98.4 7.7E-06 1.7E-10 84.7 15.3 188 256-450 44-270 (270)
168 cd04733 OYE_like_2_FMN Old yel 98.4 2.5E-06 5.4E-11 95.7 12.6 123 656-783 148-321 (338)
169 PF00113 Enolase_C: Enolase, C 98.3 4.5E-06 9.8E-11 89.8 13.1 162 653-831 76-253 (295)
170 PRK12753 transketolase; Review 98.3 1.6E-06 3.5E-11 104.9 10.7 117 318-453 111-248 (663)
171 PRK12754 transketolase; Review 98.3 2.4E-06 5.3E-11 102.6 11.8 116 318-452 111-247 (663)
172 TIGR03343 biphenyl_bphD 2-hydr 98.3 1.2E-06 2.6E-11 96.0 8.6 67 910-981 6-77 (282)
173 PF00456 Transketolase_N: Tran 98.3 1.1E-06 2.3E-11 96.9 8.0 115 319-452 109-244 (332)
174 TIGR00232 tktlase_bact transke 98.3 2.7E-06 5.9E-11 103.1 12.1 117 317-452 106-243 (653)
175 PLN02578 hydrolase 98.3 9.8E-07 2.1E-11 100.2 7.7 50 927-981 80-129 (354)
176 TIGR03056 bchO_mg_che_rel puta 98.3 1.5E-06 3.2E-11 94.8 7.6 54 925-981 18-71 (278)
177 PRK10673 acyl-CoA esterase; Pr 98.3 1.4E-06 3.1E-11 93.8 7.3 45 938-982 16-60 (255)
178 KOG4409 Predicted hydrolase/ac 98.3 1.6E-06 3.4E-11 92.8 7.1 68 911-982 67-134 (365)
179 KOG0225 Pyruvate dehydrogenase 98.2 6.4E-06 1.4E-10 86.3 10.8 149 317-485 161-361 (394)
180 PRK06489 hypothetical protein; 98.2 2.2E-06 4.8E-11 97.6 7.3 44 938-981 69-122 (360)
181 PLN03087 BODYGUARD 1 domain co 98.2 4.9E-06 1.1E-10 96.6 10.0 44 938-981 201-249 (481)
182 cd03377 TPP_PFOR_PNO Thiamine 98.2 9.5E-05 2.1E-09 81.0 18.8 111 341-453 152-269 (365)
183 cd02016 TPP_E1_OGDC_like Thiam 98.2 4.9E-06 1.1E-10 87.9 8.2 120 316-453 108-248 (265)
184 PF12146 Hydrolase_4: Putative 98.1 6.5E-06 1.4E-10 70.8 6.8 43 938-980 16-59 (79)
185 TIGR00204 dxs 1-deoxy-D-xylulo 98.1 1.2E-05 2.5E-10 97.0 11.2 132 319-455 109-278 (617)
186 cd02803 OYE_like_FMN_family Ol 98.1 1.5E-05 3.2E-10 89.5 11.3 122 657-783 141-310 (327)
187 PRK05855 short chain dehydroge 98.1 5.7E-06 1.2E-10 100.8 8.6 52 927-981 17-68 (582)
188 PHA02857 monoglyceride lipase; 98.1 6.4E-06 1.4E-10 90.1 7.7 43 938-980 25-68 (276)
189 COG4231 Indolepyruvate ferredo 98.1 1.4E-05 3E-10 91.6 9.7 118 323-449 430-552 (640)
190 cd02930 DCR_FMN 2,4-dienoyl-Co 98.0 2.9E-05 6.3E-10 87.7 11.2 121 657-782 137-304 (353)
191 PLN02234 1-deoxy-D-xylulose-5- 98.0 3.9E-05 8.4E-10 91.4 12.3 134 317-455 173-325 (641)
192 PLN02225 1-deoxy-D-xylulose-5- 98.0 0.00017 3.7E-09 86.1 17.0 192 256-454 123-367 (701)
193 COG3959 Transketolase, N-termi 97.9 7.6E-05 1.6E-09 74.7 11.0 116 318-451 116-241 (243)
194 cd02017 TPP_E1_EcPDC_like Thia 97.9 4.6E-05 1E-09 84.2 10.3 91 318-425 115-219 (386)
195 PLN02211 methyl indole-3-aceta 97.9 1.5E-05 3.2E-10 87.0 6.0 43 938-980 18-61 (273)
196 PLN02894 hydrolase, alpha/beta 97.9 2.3E-05 5E-10 90.3 7.4 44 938-981 105-148 (402)
197 COG0021 TktA Transketolase [Ca 97.9 7.9E-05 1.7E-09 85.7 11.4 118 318-453 113-250 (663)
198 PLN02385 hydrolase; alpha/beta 97.9 3.8E-05 8.2E-10 87.1 9.0 44 938-981 87-132 (349)
199 KOG2564 Predicted acetyltransf 97.9 2.5E-05 5.3E-10 80.6 6.5 68 911-981 50-119 (343)
200 cd02011 TPP_PK Thiamine pyroph 97.9 6.9E-05 1.5E-09 77.2 9.8 107 318-439 59-171 (227)
201 COG1154 Dxs Deoxyxylulose-5-ph 97.8 0.0003 6.4E-09 80.7 14.9 194 256-454 48-282 (627)
202 PLN02582 1-deoxy-D-xylulose-5- 97.8 7.6E-05 1.6E-09 89.8 10.5 130 318-454 141-323 (677)
203 PRK10749 lysophospholipase L2; 97.8 4.8E-05 1E-09 85.5 8.2 44 938-981 54-98 (330)
204 PRK14875 acetoin dehydrogenase 97.8 4.1E-05 8.8E-10 87.6 7.6 50 928-980 124-173 (371)
205 TIGR00239 2oxo_dh_E1 2-oxoglut 97.8 0.00018 3.8E-09 88.5 13.1 121 315-452 309-450 (929)
206 KOG1454 Predicted hydrolase/ac 97.7 2E-05 4.3E-10 87.6 4.0 42 938-979 58-101 (326)
207 PRK09404 sucA 2-oxoglutarate d 97.7 0.00018 3.8E-09 89.0 11.6 116 319-452 312-449 (924)
208 TIGR01249 pro_imino_pep_1 prol 97.7 5.8E-05 1.3E-09 83.9 6.7 53 925-981 17-70 (306)
209 PLN02298 hydrolase, alpha/beta 97.6 9.2E-05 2E-09 83.3 7.0 43 938-980 59-103 (330)
210 PRK07581 hypothetical protein; 97.6 6.9E-05 1.5E-09 84.6 5.7 44 938-981 41-88 (339)
211 PRK08775 homoserine O-acetyltr 97.6 5.3E-05 1.2E-09 85.7 4.6 52 925-980 48-115 (343)
212 PLN02652 hydrolase; alpha/beta 97.6 0.00016 3.5E-09 82.8 8.4 44 938-981 136-180 (395)
213 PRK00175 metX homoserine O-ace 97.5 9.7E-05 2.1E-09 84.7 5.7 55 925-979 35-107 (379)
214 TIGR01250 pro_imino_pep_2 prol 97.5 0.00016 3.5E-09 78.7 6.8 44 938-981 25-70 (288)
215 PRK09193 indolepyruvate ferred 97.5 0.00044 9.5E-09 87.0 11.1 112 321-448 481-614 (1165)
216 TIGR03101 hydr2_PEP hydrolase, 97.5 0.00024 5.3E-09 76.4 7.7 43 938-980 25-72 (266)
217 TIGR03186 AKGDH_not_PDH alpha- 97.5 0.00059 1.3E-08 83.5 11.3 118 318-452 186-389 (889)
218 PF03952 Enolase_N: Enolase, N 97.4 0.00064 1.4E-08 64.3 9.0 111 494-627 1-132 (132)
219 TIGR01392 homoserO_Ac_trn homo 97.4 0.00016 3.5E-09 82.1 5.6 55 925-979 18-89 (351)
220 PRK05261 putative phosphoketol 97.4 0.00075 1.6E-08 81.5 11.0 120 318-452 139-284 (785)
221 KOG0523 Transketolase [Carbohy 97.4 0.00097 2.1E-08 76.0 11.1 118 317-453 114-243 (632)
222 PRK13030 2-oxoacid ferredoxin 97.4 0.00083 1.8E-08 84.9 11.6 109 321-448 468-600 (1159)
223 KOG2565 Predicted hydrolases o 97.3 0.00021 4.6E-09 76.6 4.1 45 938-982 152-206 (469)
224 KOG1182 Branched chain alpha-k 97.3 0.00077 1.7E-08 70.2 7.9 119 312-452 187-319 (432)
225 COG1880 CdhB CO dehydrogenase/ 97.2 0.0017 3.7E-08 61.1 9.1 89 78-171 27-119 (170)
226 PRK13012 2-oxoacid dehydrogena 97.2 0.0022 4.7E-08 79.1 11.5 117 318-452 200-403 (896)
227 TIGR00759 aceE pyruvate dehydr 97.2 0.0029 6.2E-08 76.7 12.2 117 318-452 186-389 (885)
228 TIGR03502 lipase_Pla1_cef extr 97.1 0.00055 1.2E-08 83.1 5.7 43 938-980 449-492 (792)
229 COG2267 PldB Lysophospholipase 97.1 0.0011 2.4E-08 72.9 7.7 41 939-979 35-76 (298)
230 TIGR03100 hydr1_PEP hydrolase, 97.0 0.0019 4.1E-08 70.5 8.7 43 938-980 26-73 (274)
231 PLN02511 hydrolase 97.0 0.0011 2.3E-08 76.2 6.1 43 938-980 100-145 (388)
232 PRK13029 2-oxoacid ferredoxin 96.9 0.0033 7.2E-08 79.2 10.5 109 321-448 495-628 (1186)
233 PRK10566 esterase; Provisional 96.9 0.0023 5E-08 68.6 7.7 42 938-979 27-69 (249)
234 COG1647 Esterase/lipase [Gener 96.9 0.00098 2.1E-08 67.1 4.1 42 938-979 15-57 (243)
235 PRK09405 aceE pyruvate dehydro 96.8 0.0063 1.4E-07 74.8 11.4 117 319-452 193-395 (891)
236 TIGR02176 pyruv_ox_red pyruvat 96.7 0.0094 2E-07 76.9 12.0 111 341-453 952-1069(1165)
237 PF05034 MAAL_N: Methylasparta 96.6 0.013 2.9E-07 55.3 9.1 109 509-627 37-153 (159)
238 TIGR03230 lipo_lipase lipoprot 96.6 0.0034 7.4E-08 71.9 6.2 45 937-981 40-90 (442)
239 KOG1455 Lysophospholipase [Lip 96.5 0.0057 1.2E-07 64.9 6.7 43 938-980 54-98 (313)
240 KOG2382 Predicted alpha/beta h 96.4 0.0042 9E-08 66.9 5.4 44 938-981 52-97 (315)
241 PRK10550 tRNA-dihydrouridine s 96.3 0.061 1.3E-06 59.4 14.1 136 645-786 64-226 (312)
242 PRK10985 putative hydrolase; P 96.1 0.0062 1.3E-07 68.2 5.2 42 938-979 58-102 (324)
243 COG0596 MhpC Predicted hydrola 96.1 0.0072 1.6E-07 63.8 5.1 42 938-979 21-65 (282)
244 PF02776 TPP_enzyme_N: Thiamin 96.0 0.036 7.9E-07 55.7 9.7 106 328-451 51-162 (172)
245 PRK05077 frsA fermentation/res 96.0 0.02 4.4E-07 66.2 8.6 43 938-980 194-238 (414)
246 cd07035 TPP_PYR_POX_like Pyrim 95.9 0.047 1E-06 53.9 9.6 103 328-449 46-154 (155)
247 TIGR01607 PST-A Plasmodium sub 95.9 0.014 3E-07 65.7 6.4 43 938-980 21-90 (332)
248 PF06342 DUF1057: Alpha/beta h 95.8 0.021 4.6E-07 60.2 7.2 44 939-982 36-80 (297)
249 PRK13604 luxD acyl transferase 95.7 0.04 8.6E-07 60.0 8.8 43 938-980 37-81 (307)
250 PLN00021 chlorophyllase 95.6 0.042 9.1E-07 60.9 9.0 41 938-978 52-93 (313)
251 cd04734 OYE_like_3_FMN Old yel 95.6 0.14 3.1E-06 57.5 13.3 106 657-762 141-297 (343)
252 KOG2984 Predicted hydrolase [G 95.5 0.019 4.1E-07 56.8 5.0 65 910-982 22-89 (277)
253 PLN02872 triacylglycerol lipas 95.5 0.017 3.8E-07 66.0 5.6 41 938-978 74-121 (395)
254 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 0.16 3.4E-06 55.9 11.5 89 644-735 99-196 (289)
255 PRK10415 tRNA-dihydrouridine s 95.1 0.25 5.3E-06 55.0 12.9 131 652-789 72-229 (321)
256 PF02552 CO_dh: CO dehydrogena 95.1 0.069 1.5E-06 52.5 7.4 89 75-171 23-115 (167)
257 cd02931 ER_like_FMN Enoate red 94.9 0.3 6.5E-06 55.8 13.2 121 657-782 150-333 (382)
258 cd04735 OYE_like_4_FMN Old yel 94.7 0.21 4.4E-06 56.5 11.0 78 657-734 144-254 (353)
259 cd07039 TPP_PYR_POX Pyrimidine 94.6 0.23 5.1E-06 49.4 10.0 106 328-452 50-160 (164)
260 cd04747 OYE_like_5_FMN Old yel 94.6 0.42 9.1E-06 53.9 13.2 78 657-734 144-254 (361)
261 cd00707 Pancreat_lipase_like P 94.6 0.044 9.5E-07 59.7 5.2 41 938-978 36-80 (275)
262 PF01207 Dus: Dihydrouridine s 94.4 0.18 3.9E-06 55.8 9.6 124 653-783 62-212 (309)
263 COG0042 tRNA-dihydrouridine sy 94.3 0.54 1.2E-05 52.2 13.1 135 652-792 74-236 (323)
264 PRK07259 dihydroorotate dehydr 94.3 0.7 1.5E-05 51.1 13.9 131 645-785 93-264 (301)
265 PRK10605 N-ethylmaleimide redu 94.2 0.38 8.3E-06 54.4 11.8 102 657-758 159-300 (362)
266 PRK11815 tRNA-dihydrouridine s 93.9 0.98 2.1E-05 50.6 14.2 145 645-796 66-245 (333)
267 PRK00366 ispG 4-hydroxy-3-meth 93.9 0.32 6.9E-06 53.2 9.6 113 698-816 22-141 (360)
268 TIGR00612 ispG_gcpE 1-hydroxy- 93.7 0.31 6.7E-06 52.8 9.1 98 713-816 32-132 (346)
269 cd04740 DHOD_1B_like Dihydroor 93.7 1.2 2.5E-05 49.2 14.3 142 645-796 91-272 (296)
270 TIGR00737 nifR3_yhdG putative 93.6 1.1 2.4E-05 50.0 13.9 131 645-783 64-221 (319)
271 TIGR02821 fghA_ester_D S-formy 93.5 0.24 5.2E-06 54.0 8.4 40 938-977 42-87 (275)
272 TIGR01836 PHA_synth_III_C poly 93.3 0.088 1.9E-06 59.7 4.6 43 938-980 62-110 (350)
273 COG1029 FwdB Formylmethanofura 93.3 0.25 5.4E-06 53.4 7.5 89 70-173 63-153 (429)
274 PRK13523 NADPH dehydrogenase N 93.2 0.87 1.9E-05 51.0 12.1 106 657-762 142-287 (337)
275 PRK13761 hypothetical protein; 93.1 1.7 3.6E-05 44.2 12.5 144 71-222 52-207 (248)
276 cd00377 ICL_PEPM Members of th 93.1 1.2 2.7E-05 47.3 12.7 103 654-757 81-203 (243)
277 cd06586 TPP_enzyme_PYR Pyrimid 93.1 0.65 1.4E-05 45.5 10.0 102 328-449 47-153 (154)
278 cd02933 OYE_like_FMN Old yello 93.1 0.81 1.8E-05 51.3 11.8 103 657-759 152-294 (338)
279 COG0821 gcpE 1-hydroxy-2-methy 93.0 0.43 9.3E-06 51.3 8.8 113 698-816 16-134 (361)
280 TIGR00735 hisF imidazoleglycer 92.9 0.48 1E-05 50.9 9.3 136 663-808 89-253 (254)
281 PF06441 EHN: Epoxide hydrolas 92.7 0.2 4.4E-06 46.1 5.2 55 897-958 58-112 (112)
282 TIGR01838 PHA_synth_I poly(R)- 92.3 0.2 4.4E-06 59.2 6.0 43 938-980 188-236 (532)
283 PRK08255 salicylyl-CoA 5-hydro 91.9 1.6 3.4E-05 54.9 13.5 122 657-783 551-716 (765)
284 TIGR00742 yjbN tRNA dihydrouri 91.9 2.1 4.5E-05 47.5 12.9 135 645-786 56-225 (318)
285 PRK06552 keto-hydroxyglutarate 91.8 4.6 0.0001 41.9 14.6 141 653-812 21-162 (213)
286 cd07038 TPP_PYR_PDC_IPDC_like 91.8 1.1 2.3E-05 44.5 9.6 109 328-449 47-161 (162)
287 PRK11916 electron transfer fla 91.7 0.89 1.9E-05 49.9 9.5 115 88-223 194-310 (312)
288 TIGR03845 sulfopyru_alph sulfo 91.6 1.7 3.8E-05 42.8 10.6 103 328-449 46-153 (157)
289 COG0429 Predicted hydrolase of 91.4 0.6 1.3E-05 50.7 7.7 43 938-980 75-120 (345)
290 PRK07868 acyl-CoA synthetase; 91.3 0.18 4E-06 65.3 4.5 41 938-981 67-113 (994)
291 COG1902 NemA NADH:flavin oxido 91.3 1.9 4.1E-05 48.6 11.8 121 657-782 149-316 (363)
292 COG1701 Uncharacterized protei 91.1 3.1 6.8E-05 41.7 11.5 146 70-223 53-211 (256)
293 PRK11460 putative hydrolase; P 91.0 0.25 5.5E-06 52.3 4.5 38 938-975 16-54 (232)
294 cd07037 TPP_PYR_MenD Pyrimidin 90.9 0.81 1.7E-05 45.4 7.6 103 328-449 47-161 (162)
295 cd02929 TMADH_HD_FMN Trimethyl 90.8 2.7 5.8E-05 47.8 12.7 120 657-782 150-317 (370)
296 TIGR02320 PEP_mutase phosphoen 90.6 4.8 0.0001 43.8 13.8 113 643-755 78-216 (285)
297 TIGR00976 /NonD putative hydro 90.4 0.41 8.8E-06 57.8 6.1 43 938-980 22-69 (550)
298 PLN00022 electron transfer fla 90.3 0.96 2.1E-05 50.5 8.3 114 88-224 237-353 (356)
299 TIGR01037 pyrD_sub1_fam dihydr 90.1 3 6.5E-05 46.1 12.1 84 645-733 92-187 (300)
300 cd01408 SIRT1 SIRT1: Eukaryoti 90.0 0.58 1.3E-05 49.5 6.1 64 156-219 171-235 (235)
301 PRK09140 2-dehydro-3-deoxy-6-p 90.0 12 0.00025 38.8 15.4 141 653-812 18-158 (206)
302 TIGR00736 nifR3_rel_arch TIM-b 90.0 3.6 7.9E-05 43.2 11.8 122 653-783 76-219 (231)
303 PRK10252 entF enterobactin syn 89.6 0.38 8.2E-06 64.8 5.4 42 938-979 1068-1109(1296)
304 PRK08611 pyruvate oxidase; Pro 89.5 1.7 3.6E-05 52.9 10.4 105 328-452 55-165 (576)
305 PRK06456 acetolactate synthase 89.5 1.2 2.6E-05 54.2 9.1 106 328-452 55-166 (572)
306 PF09364 XFP_N: XFP N-terminal 89.4 0.76 1.7E-05 50.4 6.4 99 321-436 140-246 (379)
307 PRK06015 keto-hydroxyglutarate 89.4 12 0.00027 38.3 14.8 139 653-812 12-151 (201)
308 PRK00481 NAD-dependent deacety 89.3 0.72 1.6E-05 49.2 6.2 65 156-222 173-239 (242)
309 PRK14138 NAD-dependent deacety 89.2 0.8 1.7E-05 48.8 6.4 66 156-223 174-241 (244)
310 PRK07114 keto-hydroxyglutarate 89.0 7.9 0.00017 40.4 13.3 142 653-812 23-165 (222)
311 cd02911 arch_FMN Archeal FMN-b 88.6 5.4 0.00012 42.2 12.1 119 653-783 81-219 (233)
312 PRK07710 acetolactate synthase 88.5 1.6 3.5E-05 53.0 9.3 104 328-451 65-175 (571)
313 PRK08322 acetolactate synthase 88.5 1.8 4E-05 52.3 9.7 105 328-451 50-160 (547)
314 PRK07586 hypothetical protein; 88.5 1.7 3.7E-05 52.0 9.4 106 328-452 51-162 (514)
315 PRK06276 acetolactate synthase 88.5 1.7 3.8E-05 52.9 9.5 105 328-451 50-160 (586)
316 PRK08617 acetolactate synthase 88.2 1.8 3.9E-05 52.4 9.4 105 328-452 54-165 (552)
317 cd01412 SIRT5_Af1_CobB SIRT5_A 88.1 1 2.2E-05 47.4 6.3 61 157-219 161-223 (224)
318 PRK07709 fructose-bisphosphate 88.0 8.1 0.00018 42.0 13.1 134 644-787 78-236 (285)
319 TIGR01182 eda Entner-Doudoroff 88.0 15 0.00031 37.9 14.3 139 653-812 16-155 (204)
320 PRK06466 acetolactate synthase 87.9 1.8 3.8E-05 52.7 9.1 104 328-451 54-164 (574)
321 COG0028 IlvB Thiamine pyrophos 87.9 1.7 3.7E-05 52.1 8.7 105 328-452 51-162 (550)
322 PRK03363 fixB putative electro 87.9 2.9 6.3E-05 46.0 9.8 114 88-223 195-311 (313)
323 PRK10162 acetyl esterase; Prov 87.7 1.6 3.5E-05 48.6 7.9 42 938-979 81-127 (318)
324 PRK06457 pyruvate dehydrogenas 87.6 2.2 4.8E-05 51.5 9.6 106 328-452 51-161 (549)
325 PRK06882 acetolactate synthase 87.4 2.3 5E-05 51.7 9.7 106 328-452 54-165 (574)
326 cd02940 DHPD_FMN Dihydropyrimi 87.3 7.2 0.00016 43.0 12.6 145 644-797 100-295 (299)
327 PRK06048 acetolactate synthase 87.2 1.9 4.2E-05 52.2 8.8 105 328-451 57-167 (561)
328 PRK06725 acetolactate synthase 87.1 2 4.3E-05 52.1 8.8 105 328-452 64-175 (570)
329 PLN02442 S-formylglutathione h 87.0 1.2 2.7E-05 48.7 6.4 57 918-976 29-89 (283)
330 PRK07524 hypothetical protein; 86.9 2.6 5.6E-05 50.8 9.7 109 328-452 51-165 (535)
331 TIGR01504 glyox_carbo_lig glyo 86.8 3.3 7.1E-05 50.4 10.5 106 328-452 53-165 (588)
332 PRK08979 acetolactate synthase 86.7 2.5 5.4E-05 51.4 9.4 105 328-452 54-165 (572)
333 PRK05858 hypothetical protein; 86.7 2.9 6.2E-05 50.5 9.9 106 328-452 54-165 (542)
334 TIGR01304 IMP_DH_rel_2 IMP deh 86.6 6.7 0.00015 44.3 11.9 146 660-828 102-278 (369)
335 TIGR03254 oxalate_oxc oxalyl-C 86.4 2.6 5.6E-05 51.0 9.3 107 328-451 52-164 (554)
336 COG0106 HisA Phosphoribosylfor 86.4 5.5 0.00012 41.6 10.2 127 662-797 89-237 (241)
337 PRK09107 acetolactate synthase 86.3 2.1 4.6E-05 52.2 8.5 106 328-452 61-172 (595)
338 PRK08978 acetolactate synthase 86.2 2.2 4.8E-05 51.6 8.6 106 328-452 50-161 (548)
339 PF04083 Abhydro_lipase: Parti 86.2 1.7 3.6E-05 35.5 5.1 19 937-955 42-60 (63)
340 PRK08155 acetolactate synthase 86.1 2.3 5E-05 51.6 8.7 105 328-451 63-173 (564)
341 PRK05333 NAD-dependent deacety 86.1 1.5 3.2E-05 48.0 6.3 67 156-224 210-278 (285)
342 PRK12738 kbaY tagatose-bisphos 86.1 9.6 0.00021 41.4 12.3 134 644-787 75-235 (286)
343 PRK07979 acetolactate synthase 86.0 2.8 6E-05 51.0 9.4 106 328-452 54-165 (574)
344 PRK08649 inosine 5-monophospha 86.0 8.4 0.00018 43.6 12.4 133 683-828 116-279 (368)
345 COG2025 FixB Electron transfer 85.8 2.7 5.8E-05 45.9 7.9 113 90-224 197-311 (313)
346 PRK07418 acetolactate synthase 85.7 3.1 6.8E-05 51.0 9.6 106 328-452 72-183 (616)
347 PRK06112 acetolactate synthase 85.6 2.9 6.2E-05 50.9 9.2 104 328-451 61-171 (578)
348 TIGR01858 tag_bisphos_ald clas 85.5 9.4 0.0002 41.4 12.0 134 644-787 73-233 (282)
349 cd07034 TPP_PYR_PFOR_IOR-alpha 85.4 3.4 7.4E-05 40.7 8.1 102 328-448 53-158 (160)
350 PRK08199 thiamine pyrophosphat 85.3 3.3 7.1E-05 50.2 9.4 104 328-451 58-168 (557)
351 PRK02083 imidazole glycerol ph 85.3 7.1 0.00015 41.9 11.1 136 663-808 89-251 (253)
352 PRK11320 prpB 2-methylisocitra 85.2 15 0.00032 40.1 13.3 113 643-756 78-208 (292)
353 cd00945 Aldolase_Class_I Class 85.2 12 0.00026 38.1 12.4 98 656-753 64-175 (201)
354 cd07033 TPP_PYR_DXS_TK_like Py 84.9 6 0.00013 39.0 9.4 101 328-448 51-154 (156)
355 PRK09444 pntB pyridine nucleot 84.8 1.8 4E-05 49.0 6.3 141 73-222 293-461 (462)
356 KOG2335 tRNA-dihydrouridine sy 84.8 11 0.00024 41.5 12.0 148 652-806 81-268 (358)
357 PRK07789 acetolactate synthase 84.7 3.3 7.1E-05 50.8 9.1 106 328-452 81-192 (612)
358 PTZ00408 NAD-dependent deacety 84.1 2.5 5.5E-05 44.8 6.8 64 157-222 169-234 (242)
359 PRK11269 glyoxylate carboligas 83.8 4.3 9.2E-05 49.6 9.5 105 328-452 54-166 (591)
360 TIGR02317 prpB methylisocitrat 83.6 23 0.0005 38.6 13.9 112 643-755 73-202 (285)
361 PLN02470 acetolactate synthase 83.6 3.8 8.3E-05 49.9 9.0 104 328-451 63-173 (585)
362 PRK06765 homoserine O-acetyltr 83.5 1.7 3.6E-05 49.9 5.5 58 923-980 41-115 (389)
363 TIGR00173 menD 2-succinyl-5-en 83.5 3.1 6.8E-05 48.6 7.9 106 328-452 50-167 (432)
364 TIGR03128 RuMP_HxlA 3-hexulose 83.4 9.3 0.0002 39.5 10.7 100 703-811 3-108 (206)
365 PRK09259 putative oxalyl-CoA d 83.4 4.3 9.3E-05 49.3 9.3 107 328-451 59-171 (569)
366 TIGR03457 sulphoacet_xsc sulfo 83.2 4.7 0.0001 49.1 9.6 106 328-452 51-161 (579)
367 PRK05835 fructose-bisphosphate 83.2 22 0.00048 38.9 13.6 111 644-760 75-214 (307)
368 PRK12737 gatY tagatose-bisphos 83.1 16 0.00034 39.8 12.4 134 644-787 75-235 (284)
369 PRK14024 phosphoribosyl isomer 82.9 6.6 0.00014 41.8 9.5 113 662-783 89-221 (241)
370 TIGR02720 pyruv_oxi_spxB pyruv 82.8 5.5 0.00012 48.4 10.0 106 328-452 50-160 (575)
371 PRK07525 sulfoacetaldehyde ace 82.6 5 0.00011 49.0 9.5 106 328-452 55-165 (588)
372 cd02761 MopB_FmdB-FwdB The Mop 82.5 5.8 0.00012 46.0 9.7 116 69-198 53-181 (415)
373 KOG1552 Predicted alpha/beta h 82.4 5 0.00011 42.2 7.9 44 938-981 60-105 (258)
374 PRK08266 hypothetical protein; 82.3 5.5 0.00012 48.1 9.7 106 328-451 55-168 (542)
375 PF04551 GcpE: GcpE protein; 82.3 3.4 7.5E-05 45.4 6.9 97 713-816 29-142 (359)
376 TIGR00118 acolac_lg acetolacta 82.2 4.5 9.8E-05 49.0 8.9 104 328-451 51-161 (558)
377 CHL00099 ilvB acetohydroxyacid 82.1 5.1 0.00011 48.8 9.3 105 328-452 63-174 (585)
378 KOG1838 Alpha/beta hydrolase [ 81.6 2.8 6.1E-05 47.3 6.1 44 938-981 125-171 (409)
379 PRK07998 gatY putative fructos 81.4 20 0.00043 38.9 12.3 132 644-786 75-231 (283)
380 PRK07282 acetolactate synthase 81.4 4.4 9.5E-05 49.1 8.3 105 328-452 60-171 (566)
381 PRK12474 hypothetical protein; 81.3 6.7 0.00015 47.0 9.8 106 328-452 55-166 (518)
382 PF00724 Oxidored_FMN: NADH:fl 81.2 3.9 8.6E-05 46.0 7.3 122 657-783 149-320 (341)
383 cd02768 MopB_NADH-Q-OR-NuoG2 M 81.2 9.8 0.00021 43.6 10.8 116 70-198 69-191 (386)
384 PRK12857 fructose-1,6-bisphosp 81.2 18 0.0004 39.3 12.0 135 643-787 74-235 (284)
385 PRK06965 acetolactate synthase 81.1 6 0.00013 48.2 9.4 106 328-452 71-182 (587)
386 PRK08327 acetolactate synthase 81.0 5.2 0.00011 48.5 8.8 113 328-451 62-181 (569)
387 PRK03620 5-dehydro-4-deoxygluc 80.9 56 0.0012 36.1 16.2 153 654-812 25-190 (303)
388 PRK09195 gatY tagatose-bisphos 80.8 20 0.00043 39.0 12.1 135 643-787 74-235 (284)
389 PRK06546 pyruvate dehydrogenas 80.8 5.8 0.00013 48.2 9.1 105 328-451 53-162 (578)
390 PRK12270 kgd alpha-ketoglutara 80.8 7 0.00015 48.5 9.3 94 343-452 650-754 (1228)
391 cd04741 DHOD_1A_like Dihydroor 80.6 36 0.00077 37.4 14.4 151 644-803 92-292 (294)
392 PF05448 AXE1: Acetyl xylan es 80.5 8.2 0.00018 42.9 9.4 39 938-976 83-121 (320)
393 cd06556 ICL_KPHMT Members of t 80.5 9.8 0.00021 40.3 9.5 95 653-755 85-196 (240)
394 PRK05718 keto-hydroxyglutarate 80.4 39 0.00084 35.1 13.7 139 653-812 23-162 (212)
395 COG3458 Acetyl esterase (deace 80.3 4.3 9.3E-05 42.8 6.5 42 938-979 83-124 (321)
396 PRK07092 benzoylformate decarb 80.3 6.4 0.00014 47.3 9.2 107 328-452 60-172 (530)
397 PRK09124 pyruvate dehydrogenas 80.0 7.1 0.00015 47.5 9.6 106 328-452 53-163 (574)
398 PF01081 Aldolase: KDPG and KH 80.0 16 0.00035 37.3 10.6 140 652-812 15-155 (196)
399 PRK13585 1-(5-phosphoribosyl)- 79.6 9.2 0.0002 40.6 9.2 114 663-785 91-223 (241)
400 cd04732 HisA HisA. Phosphorib 79.4 7.6 0.00016 41.0 8.5 113 662-783 87-218 (234)
401 PF02233 PNTB: NAD(P) transhyd 79.2 1.5 3.3E-05 50.2 3.1 143 73-222 294-462 (463)
402 KOG4391 Predicted alpha/beta h 78.8 6.6 0.00014 39.9 7.0 44 938-981 78-123 (300)
403 PRK08273 thiamine pyrophosphat 78.8 7.9 0.00017 47.3 9.5 106 328-452 54-165 (597)
404 PF12740 Chlorophyllase2: Chlo 78.4 2.9 6.4E-05 44.4 4.8 39 938-976 17-56 (259)
405 TIGR02418 acolac_catab acetola 78.3 7.1 0.00015 47.1 8.8 106 328-452 48-159 (539)
406 TIGR03297 Ppyr-DeCO2ase phosph 78.1 12 0.00027 42.2 9.9 109 328-451 38-153 (361)
407 TIGR00167 cbbA ketose-bisphosp 78.1 27 0.0006 38.0 12.2 135 643-787 77-239 (288)
408 PRK08527 acetolactate synthase 77.8 7.8 0.00017 47.0 8.9 105 328-451 53-163 (563)
409 cd00951 KDGDH 5-dehydro-4-deox 77.7 78 0.0017 34.6 15.9 153 654-812 18-183 (289)
410 TIGR01496 DHPS dihydropteroate 77.6 52 0.0011 35.3 14.1 151 654-813 20-204 (257)
411 cd04726 KGPDC_HPS 3-Keto-L-gul 77.5 12 0.00026 38.4 9.1 100 702-810 3-108 (202)
412 TIGR01182 eda Entner-Doudoroff 77.5 5.1 0.00011 41.2 6.1 92 713-817 18-113 (204)
413 PRK08610 fructose-bisphosphate 77.5 30 0.00065 37.7 12.2 134 644-787 78-236 (286)
414 PRK05718 keto-hydroxyglutarate 77.5 6.4 0.00014 40.9 6.9 91 711-814 23-117 (212)
415 PRK06154 hypothetical protein; 77.4 8.6 0.00019 46.6 9.1 103 328-451 66-176 (565)
416 cd01409 SIRT4 SIRT4: Eukaryoti 77.4 2.9 6.3E-05 45.0 4.5 60 155-216 199-260 (260)
417 PTZ00409 Sir2 (Silent Informat 77.3 5.1 0.00011 43.3 6.3 66 156-223 195-262 (271)
418 PRK05286 dihydroorotate dehydr 77.2 11 0.00025 42.3 9.4 78 655-733 155-243 (344)
419 cd00452 KDPG_aldolase KDPG and 77.2 67 0.0015 32.6 14.4 138 653-812 12-150 (190)
420 TIGR01305 GMP_reduct_1 guanosi 77.2 52 0.0011 36.4 13.8 132 654-817 78-224 (343)
421 PRK13587 1-(5-phosphoribosyl)- 77.1 22 0.00049 37.5 11.1 112 662-782 90-219 (234)
422 TIGR03572 WbuZ glycosyl amidat 77.0 11 0.00025 39.7 8.9 111 663-782 89-225 (232)
423 COG3957 Phosphoketolase [Carbo 76.9 5.1 0.00011 47.7 6.4 87 321-426 153-247 (793)
424 TIGR01591 Fdh-alpha formate de 76.8 21 0.00045 44.4 12.5 117 71-197 69-196 (671)
425 KOG4667 Predicted esterase [Li 76.7 3.9 8.5E-05 41.6 4.7 43 938-980 33-78 (269)
426 cd07036 TPP_PYR_E1-PDHc-beta_l 76.7 16 0.00034 36.5 9.2 100 328-447 56-164 (167)
427 PLN02979 glycolate oxidase 76.4 77 0.0017 35.7 15.2 86 738-829 211-302 (366)
428 PRK06801 hypothetical protein; 75.8 23 0.0005 38.6 10.8 144 643-795 74-244 (286)
429 PRK07064 hypothetical protein; 75.7 12 0.00027 45.1 9.8 107 328-451 53-166 (544)
430 PF02006 DUF137: Protein of un 75.6 22 0.00047 34.8 9.2 132 85-222 3-146 (178)
431 cd00947 TBP_aldolase_IIB Tagat 75.3 33 0.00073 37.1 11.8 135 643-787 69-229 (276)
432 PRK05458 guanosine 5'-monophos 75.2 40 0.00086 37.5 12.6 114 657-784 96-230 (326)
433 PRK07535 methyltetrahydrofolat 74.9 24 0.00053 37.9 10.7 153 654-813 22-197 (261)
434 PRK06015 keto-hydroxyglutarate 74.6 6.7 0.00015 40.2 6.0 94 712-818 13-110 (201)
435 cd04731 HisF The cyclase subun 74.6 16 0.00034 38.9 9.2 131 663-803 86-242 (243)
436 PRK08185 hypothetical protein; 74.5 44 0.00095 36.4 12.5 136 643-787 68-231 (283)
437 PRK13307 bifunctional formalde 74.5 27 0.00057 39.9 11.3 113 699-819 172-291 (391)
438 cd04738 DHOD_2_like Dihydrooro 74.4 26 0.00056 39.2 11.3 77 656-733 147-234 (327)
439 PRK05096 guanosine 5'-monophos 74.1 1.1E+02 0.0024 33.9 15.3 129 654-814 79-222 (346)
440 COG0800 Eda 2-keto-3-deoxy-6-p 73.9 53 0.0011 33.8 12.0 121 653-792 21-142 (211)
441 PRK00208 thiG thiazole synthas 73.8 35 0.00076 35.9 11.0 136 653-804 72-220 (250)
442 PF02779 Transket_pyr: Transke 73.6 23 0.00051 35.6 9.8 103 328-450 60-172 (178)
443 cd04728 ThiG Thiazole synthase 73.5 36 0.00078 35.8 11.0 120 653-784 72-204 (248)
444 PRK11892 pyruvate dehydrogenas 73.1 24 0.00052 41.3 10.9 97 328-446 201-308 (464)
445 COG4032 Predicted thiamine-pyr 72.8 6.6 0.00014 36.9 4.8 102 329-447 55-160 (172)
446 PRK01130 N-acetylmannosamine-6 72.7 39 0.00084 35.3 11.5 110 661-784 79-202 (221)
447 cd02767 MopB_ydeP The MopB_yde 72.6 43 0.00092 40.6 13.2 117 70-196 81-203 (574)
448 TIGR01859 fruc_bis_ald_ fructo 72.5 77 0.0017 34.6 13.9 133 644-788 75-234 (282)
449 cd02753 MopB_Formate-Dh-H Form 72.2 54 0.0012 39.2 14.1 119 70-198 69-198 (512)
450 cd01460 vWA_midasin VWA_Midasi 72.0 22 0.00048 38.2 9.4 84 342-438 166-256 (266)
451 PRK04165 acetyl-CoA decarbonyl 71.9 1.4E+02 0.003 34.8 16.4 135 650-796 98-243 (450)
452 cd02752 MopB_Formate-Dh-Na-lik 71.6 13 0.00028 45.6 8.6 119 70-198 71-212 (649)
453 PLN02493 probable peroxisomal 71.2 1.2E+02 0.0026 34.4 15.3 84 738-829 212-303 (367)
454 PLN02274 inosine-5'-monophosph 71.2 47 0.001 39.4 12.8 128 643-787 236-383 (505)
455 cd04739 DHOD_like Dihydroorota 71.0 44 0.00095 37.3 12.0 154 644-807 100-294 (325)
456 PRK07565 dihydroorotate dehydr 70.9 48 0.001 37.2 12.4 84 644-732 102-194 (334)
457 PF07224 Chlorophyllase: Chlor 70.8 3.8 8.2E-05 43.1 3.2 37 938-974 46-83 (307)
458 COG1029 FwdB Formylmethanofura 70.7 15 0.00033 40.3 7.7 118 72-196 231-370 (429)
459 TIGR03129 one_C_dehyd_B formyl 70.7 17 0.00036 42.2 9.1 46 70-115 60-105 (421)
460 COG0400 Predicted esterase [Ge 70.5 4.3 9.4E-05 41.9 3.6 33 938-970 18-50 (207)
461 PRK00694 4-hydroxy-3-methylbut 70.2 17 0.00037 42.6 8.5 112 698-816 25-169 (606)
462 cd01410 SIRT7 SIRT7: Eukaryoti 69.7 6.5 0.00014 40.7 4.7 53 156-210 151-205 (206)
463 COG0800 Eda 2-keto-3-deoxy-6-p 69.2 11 0.00025 38.5 6.1 90 713-815 23-116 (211)
464 cd02754 MopB_Nitrate-R-NapA-li 68.8 49 0.0011 40.1 12.9 119 70-198 70-201 (565)
465 PTZ00314 inosine-5'-monophosph 68.6 69 0.0015 38.0 13.5 131 643-789 229-378 (495)
466 TIGR03394 indol_phenyl_DC indo 68.5 19 0.00042 43.3 9.1 110 328-452 50-166 (535)
467 TIGR03249 KdgD 5-dehydro-4-deo 68.4 1.7E+02 0.0038 32.0 16.0 152 654-811 23-187 (296)
468 PRK01033 imidazole glycerol ph 68.1 25 0.00055 37.8 9.1 111 663-782 89-224 (258)
469 TIGR02319 CPEP_Pphonmut carbox 68.1 63 0.0014 35.3 12.0 110 643-753 77-204 (294)
470 cd07939 DRE_TIM_NifV Streptomy 68.1 22 0.00047 38.3 8.6 114 710-829 15-147 (259)
471 cd04723 HisA_HisF Phosphoribos 68.1 35 0.00076 36.0 10.0 110 662-783 92-217 (233)
472 PRK05458 guanosine 5'-monophos 67.8 1.1E+02 0.0023 34.1 13.9 138 655-827 70-223 (326)
473 cd00956 Transaldolase_FSA Tran 67.7 58 0.0013 33.8 11.3 108 689-807 41-157 (211)
474 PRK07455 keto-hydroxyglutarate 67.6 99 0.0021 31.4 12.7 138 653-812 20-159 (187)
475 PRK09196 fructose-1,6-bisphosp 67.6 64 0.0014 36.1 12.0 111 644-759 76-235 (347)
476 PF01070 FMN_dh: FMN-dependent 67.4 16 0.00035 41.2 7.7 164 654-829 120-304 (356)
477 PRK12330 oxaloacetate decarbox 67.3 1.9E+02 0.0041 34.2 16.4 170 654-825 24-220 (499)
478 PF12715 Abhydrolase_7: Abhydr 67.1 14 0.0003 41.5 6.8 44 938-981 115-177 (390)
479 COG1282 PntB NAD/NADP transhyd 67.0 11 0.00024 41.3 5.7 91 75-172 297-395 (463)
480 PRK07084 fructose-bisphosphate 66.8 67 0.0015 35.5 11.9 111 643-759 85-226 (321)
481 TIGR00284 dihydropteroate synt 66.8 2.1E+02 0.0046 33.9 16.7 161 643-812 151-318 (499)
482 cd02774 MopB_Res-Cmplx1_Nad11- 66.1 37 0.00081 38.5 10.3 113 70-195 69-188 (366)
483 COG2021 MET2 Homoserine acetyl 66.0 10 0.00022 42.1 5.5 60 923-982 36-111 (368)
484 TIGR03128 RuMP_HxlA 3-hexulose 65.7 40 0.00086 34.7 9.8 123 653-786 8-135 (206)
485 TIGR02090 LEU1_arch isopropylm 65.5 18 0.00038 41.1 7.6 96 711-812 18-132 (363)
486 COG0075 Serine-pyruvate aminot 65.4 18 0.0004 40.9 7.4 98 340-468 55-159 (383)
487 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.1 1.8E+02 0.004 31.5 15.1 168 654-823 18-210 (275)
488 cd07944 DRE_TIM_HOA_like 4-hyd 64.8 46 0.001 36.0 10.3 101 709-813 14-130 (266)
489 PF06500 DUF1100: Alpha/beta h 64.7 11 0.00024 42.8 5.6 43 938-980 190-234 (411)
490 cd00958 DhnA Class I fructose- 64.5 56 0.0012 34.5 10.8 128 654-782 73-212 (235)
491 PF03403 PAF-AH_p_II: Platelet 64.4 5.2 0.00011 45.6 3.0 37 938-974 100-137 (379)
492 cd02773 MopB_Res-Cmplx1_Nad11 64.2 30 0.00065 39.5 9.3 111 70-195 68-185 (375)
493 TIGR01973 NuoG NADH-quinone ox 63.7 44 0.00095 40.9 11.1 115 70-198 286-405 (603)
494 cd04722 TIM_phosphate_binding 63.4 68 0.0015 32.1 11.0 109 663-782 77-197 (200)
495 PRK14040 oxaloacetate decarbox 63.4 2.4E+02 0.0053 34.2 16.9 170 654-825 24-218 (593)
496 PRK08318 dihydropyrimidine deh 63.3 79 0.0017 36.7 12.6 146 645-799 101-298 (420)
497 TIGR02660 nifV_homocitr homoci 63.1 23 0.00051 40.2 8.0 119 707-830 11-151 (365)
498 TIGR00007 phosphoribosylformim 62.8 38 0.00081 35.6 9.1 113 662-783 86-217 (230)
499 PRK06806 fructose-bisphosphate 62.6 75 0.0016 34.6 11.3 136 644-789 75-235 (281)
500 PRK12331 oxaloacetate decarbox 62.4 2.2E+02 0.0047 33.4 15.7 169 654-824 23-216 (448)
No 1
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=4e-127 Score=1243.73 Aligned_cols=972 Identities=71% Similarity=1.145 Sum_probs=778.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++|||||||+||+|+|+++...+.+..+.+.++.|.....+........ ..+.+.++++.++++++
T Consensus 441 l~~~v~~A~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~ 519 (1655)
T PLN02980 441 VLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQ-SSKADGDTTGQITEVLE 519 (1655)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccc-cccccccchhhHHHHHH
Confidence 46899999999999999999999999887765422111011111222211111111110000 00112345678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhh--hccccccccchhhhccCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLE--TEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~--~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
+|.+||||+||+|+|+......++.+|||++|+||++|+++|+|.+..||+||+ +||++ +|++|..........+.
T Consensus 520 ~L~~AkRPvIvaG~G~~~~~a~~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~--~g~~g~~~~~~~~~~~~ 597 (1655)
T PLN02980 520 VIQEAKRGLLLIGAIHTEDDIWAALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILF--VDHLDHALLSDSVRNWI 597 (1655)
T ss_pred HHHhCCCcEEEEcCCCchHHHHHHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccc--cchHHHHhCchhhhccC
Confidence 999999999999999865444466999999999999999877544434599999 88885 78887644344455678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
++|+||+||+++++..++++...+.+.++||||+|+.++++++..++.|++|++.++++|.+.........|.+.+...+
T Consensus 598 ~aDlVl~iG~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 677 (1655)
T PLN02980 598 QFDVVIQIGSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALD 677 (1655)
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHH
Confidence 99999999999976666555544444569999999999999999999999999999999976433222346776665554
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
...............++++.++++.|++.+|++++|++|+|+++|++++|...++++...+++++.+...|+.++.++++
T Consensus 678 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ 757 (1655)
T PLN02980 678 GMVAQEISFQIHAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGN 757 (1655)
T ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEec
Confidence 43322221111112358899999999999999999999999999999999866554211344444333345556656799
Q ss_pred CCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 320 RGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
+|+|||||++|+|||+++|.+++||||+|||||+|++|||+|++++.|++|++|||+||++|+|+++++.........++
T Consensus 758 ~G~mG~~G~lpaAIGaala~~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~ 837 (1655)
T PLN02980 758 RGASGIDGLLSTAIGFAVGCNKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLN 837 (1655)
T ss_pred CCccchhhhHHHHHHHhhcCCCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHH
Confidence 99999999999999999998899999999999999999999999822499999999999999999886543211112244
Q ss_pred cccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHHHHHHHhhhhc
Q 041113 400 QYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLSQ 479 (983)
Q Consensus 400 ~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (983)
+++.+.+++||.++|++||+++.+|++++||+++|+++++.++|+||||.++++++.+.++.+.+++.+.+..||.++..
T Consensus 838 ~~~~~~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1655)
T PLN02980 838 QYFYTSHDISIENLCLAHGVRHLHVGTKSELEDALFTSQVEQMDCVVEVESSIDANAAFHSTLRKFACQAAEHALGILSE 917 (1655)
T ss_pred HHhcCCCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhhccCCCEEEEEecChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666778999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCccceeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHH
Q 041113 480 FSVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEE 559 (983)
Q Consensus 480 ~~~~~~~~~~~~~mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~ 559 (983)
++.++...+....|||++|+++.+++||+.|+.++.+++ +.+.++.++|+|++++|.+||||++|.+++.|++.++.+
T Consensus 918 ~~~~~~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~--~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~~~~~ 995 (1655)
T PLN02980 918 SSCLHSIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDF--SQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLLDVEE 995 (1655)
T ss_pred CCcccccccccccceEeEEEEEEEEeeccCCcEeecccc--ccceeeEEEEEEEECCCCEEEEecCCCCCCccccccHHH
Confidence 999988888744599999999999999999999988653 124589999999999999999999998777777776666
Q ss_pred HHHHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccc
Q 041113 560 QLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639 (983)
Q Consensus 560 ~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~ 639 (983)
++..+...+.+.....+.+++.+.+.++.+..+.......++++++|||||||||+||..|+|||+||||.+. ......
T Consensus 996 ~l~~~~~~l~~~~~~~l~p~l~G~~~~~~~~~l~~~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~-~~~~~~ 1074 (1655)
T PLN02980 996 QLRFLLHVIKGAKISFMLPLLKGSFSSWIWSELGIPPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQK-DENGSE 1074 (1655)
T ss_pred HHHHHHHHHhhhhhhhhhHhhcCcchHHHHHHhhccccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCC-Ccceec
Confidence 6666655554433333455555554444444332222245789999999999999999999999999988431 001111
Q ss_pred ccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 041113 640 RSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719 (983)
Q Consensus 640 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~ 719 (983)
.+.+|++|+.+....+++++++++++++++||++||+|+|...++++|+++|++||+++|+++.||+|||++||+++|++
T Consensus 1075 ~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1075 QSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred cccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 23568888876555689999999999999999999999986335789999999999999999999999999999999999
Q ss_pred HHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHH
Q 041113 720 FGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 720 ~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
+++.|++++++|||||+++.+++++|++++++|||+||++.+..+.+...+..+++.+++++++|++++||+++++++++
T Consensus 1155 ~~~~L~~~~i~~iEqPl~~~~~l~~l~~~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~~~i~iK~~~~GGit~~~~ia~ 1234 (1655)
T PLN02980 1155 FGSLVKSCNLKYIEEPVQDEDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYTHPGIVAVVIKPSVVGGFENAALIAR 1234 (1655)
T ss_pred HHHHHhhcCCCEEECCCCCHHHHHHHHHhCCCCEEeCCCcCCcccchHHHHHHHHHCCCeEEEeChhhhCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999876423345666776778889999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeeccCCCCee
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICHNSCRGFV 879 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~~P~~pGl 879 (983)
+|+++|++++++|++||+||+++++|+|+.++..+...++.......++.++|++|+.||.+|+...|+.++.-|.++|.
T Consensus 1235 ~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~~~~~~~~~~~~~~~~~~a~Gl~t~~~~~~d~~~~pl~~~~~~~~~~~ 1314 (1655)
T PLN02980 1235 WAQQHGKMAVISAAYESGLGLSAYIQFASYLEMQNAKASREMNKGTCPSVAHGLGTYRWLKEDVTMNPLGIFRSPYSGFI 1314 (1655)
T ss_pred HHHHcCCeEEecCcccCHHHHHHHHHHHHhchhhcccccccccccCCCCcCCCCchHhHhhccCccCCccccccCCCCce
Confidence 99999999999999999999999999999986443222222223345778999999999999998899999999999999
Q ss_pred eEEecchhhhhhhcccccccccccccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHH
Q 041113 880 EASVAKATHILQNLQINNDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMK 959 (983)
Q Consensus 880 Gv~~d~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~ 959 (983)
++.+.++..++++++++.+.+.+++..++++...+.++..+.+|.+++...|... ++++|||+|||++++..|.++++
T Consensus 1315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~i~~~~~G~~~--~~~~vVllHG~~~s~~~w~~~~~ 1392 (1655)
T PLN02980 1315 EASVADASRNLQKFQINNDVIVRTFKEEQVRTYELRVDVDGFSCLIKVHEVGQNA--EGSVVLFLHGFLGTGEDWIPIMK 1392 (1655)
T ss_pred eeechhhHHHHHHhccCHHHHHHHhccCCCceEEEEEccCceEEEEEEEecCCCC--CCCeEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999989888888988888777521 26899999999999999999999
Q ss_pred HhhCCCEEEEEcCCCCCCCCCC
Q 041113 960 AVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 960 ~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+++|+||++|+||||.|+.+
T Consensus 1393 ~L~~~~rVi~~Dl~G~G~S~~~ 1414 (1655)
T PLN02980 1393 AISGSARCISIDLPGHGGSKIQ 1414 (1655)
T ss_pred HHhCCCEEEEEcCCCCCCCCCc
Confidence 9999999999999999999753
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.8e-63 Score=577.82 Aligned_cols=397 Identities=19% Similarity=0.209 Sum_probs=324.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+|++++++||++|.++|||||||+||.|......... .+ .. ...+.+.|...+. +++++++
T Consensus 134 ~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~----------------~~-~~-~~~~~~~p~~~~~-~~i~~aa 194 (550)
T COG0028 134 DIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEP----------------GP-EP-AILPPYRPAPPPP-EAIRKAA 194 (550)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccc----------------cc-cc-cccccCCCCCCcH-HHHHHHH
Confidence 4789999999999999999999999999654432110 00 00 0001111222222 7899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|+. .++.+++++|||++++||++|++ | ||++|++||++ +|..|..++..++.+++
T Consensus 195 ~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~-g------kg~~p~~hp~~--lG~~g~~g~~~a~~~~~ 265 (550)
T COG0028 195 ELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLM-G------KGAVPEDHPLS--LGMLGMHGTKAANEALE 265 (550)
T ss_pred HHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccC-c------CccCCCCCccc--cccccccccHHHHHHhh
Confidence 999999999999999987 45678999999999999999998 7 89999999985 79999888877888899
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+|||||++|+++++..+. +.....+..+||||+|+.++++++++++.|++|++.+|++|.+.+... ...|.++..+.+
T Consensus 266 ~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~~~-~~~~~~~~~~~~ 343 (550)
T COG0028 266 EADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPE-RAAWLEELLEAR 343 (550)
T ss_pred cCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhhhc-chHHHHHHHHHH
Confidence 999999999999887776 443333334999999999999999999999999999999999987543 457877776655
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
..+........ .....+|.++++.|++.+++|+++++|.|+ +.+|..+++++ ++||+|+ .+++
T Consensus 344 ~~~~~~~~~~~-~~~~~~p~~v~~~l~~~~~~daiv~~d~G~----~~~w~a~~~~~-~~p~~~~-----------~s~~ 406 (550)
T COG0028 344 AAYRDLALEEL-ADDGIKPQYVIKVLRELLPDDAIVVTDVGQ----HQMWAARYFDF-YRPRRFL-----------TSGG 406 (550)
T ss_pred Hhhhhhhhhcc-CCCccCHHHHHHHHHHhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCcEE-----------cCCC
Confidence 44433222211 122337999999999999999999999999 89999998886 5776665 3689
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||||+|. +++||+|+|||||+|++|||+|++| |++|+++||+||++||++++++... ..
T Consensus 407 ~GtMG~--glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r--~~lpv~ivv~nN~~~g~v~~~q~~~-----~~ 477 (550)
T COG0028 407 LGTMGF--GLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVR--YGLPVKIVVLNNGGYGMVRQWQELF-----YG 477 (550)
T ss_pred Cccccc--hHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHH--hCCCEEEEEEECCccccchHHHHHh-----cC
Confidence 999999 999999999999 8999999999999999999999999 9999999999999999998753211 11
Q ss_pred ccccccCCCCC-HHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 399 DQYFYTTHNIS-IQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 399 ~~~~~~~~~~d-f~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.+++.+..... |+++|++||+++++|++++||+++|+++++.++|+||||.||++
T Consensus 478 ~~~~~~~~~~~~f~klAea~G~~g~~v~~~~el~~al~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 478 GRYSGTDLGNPDFVKLAEAYGAKGIRVETPEELEEALEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred CCcceeecCCccHHHHHHHcCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 12233333222 99999999999999999999999999999999999999999988
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=6.2e-59 Score=555.83 Aligned_cols=410 Identities=15% Similarity=0.188 Sum_probs=315.0
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++|||||||+||.|.+..+.... ..+...... ..+.++++.+++++
T Consensus 137 ~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~-----~~~~~~~~~i~~~~ 196 (588)
T TIGR01504 137 LVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD---------------PDTYEPLPV-----YKPAATRAQIEKAV 196 (588)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEeCcchhhcccCCc---------------ccccccccC-----CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643222100 000000000 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~ 158 (983)
++|.+||||+||+|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|++|.. ++..++..+
T Consensus 197 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~-g------kg~~p~~hpl~--~G~~g~~~~~~~a~~~l 267 (588)
T TIGR01504 197 EMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLM-G------WGCIPDDHELM--AGMVGLQTSHRYGNATL 267 (588)
T ss_pred HHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCc-c------CCCCCCCChhh--CcCCCCCCCcHHHHHHH
Confidence 999999999999999987 45678999999999999999997 7 89999999995 7888765 344556678
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-------CCChhH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-------HRSSKW 231 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-------~~~~~w 231 (983)
++||+||++|+++++..+..|....+..++||||.|+.++++++..++.|++|++.+|++|.+.+.. .....|
T Consensus 268 ~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~ 347 (588)
T TIGR01504 268 LESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEW 347 (588)
T ss_pred HhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHH
Confidence 9999999999999776654443222334699999999999999999999999999999999886532 112355
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+...+...... ....+.++++..+++.|++.++++.+|+.|+|+ +..|..+++++ ++|++|+
T Consensus 348 ~~~~~~~~~~~~~~---~~~~~~~l~p~~~~~~l~~~l~~d~ivv~D~G~----~~~~~~~~~~~-~~p~~~~------- 412 (588)
T TIGR01504 348 AADCQQRKRTLLRK---THFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGL----SQIAGAQMLHV-YKPRHWI------- 412 (588)
T ss_pred HHHHHHHHHhCccc---ccCCCCCcCHHHHHHHHHHhCCCCCEEEECCcH----HHHHHHHhccc-cCCCcEE-------
Confidence 54444332211110 011234699999999999999999999999999 67777777664 5555554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||||++|||+|++| |++|+++||+||++|++++..+..
T Consensus 413 ----~~~~~gsmG~--glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpvv~iV~NN~~yg~i~~~q~~ 484 (588)
T TIGR01504 413 ----NCGQAGPLGW--TIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQ--HNIPYIHVLVNNAYLGLIRQAQRA 484 (588)
T ss_pred ----eCCccccccc--hHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 999999999999999998764211
Q ss_pred CCCC---cccccc-cc--ccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccchHHHH
Q 041113 391 DRTE---PRILDQ-YF--YTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDANATFHS 460 (983)
Q Consensus 391 ~~~~---~~~~~~-~~--~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~~~~~~ 460 (983)
.... ...++. .. ...+++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.+++++.++..+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~~~~~~~~~ 564 (588)
T TIGR01504 485 FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVEVILERVTNISMGS 564 (588)
T ss_pred hcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccccCCCCCC
Confidence 0000 000000 00 0112699999999999999999999999999999984 799999999999988764433
Q ss_pred HH
Q 041113 461 ML 462 (983)
Q Consensus 461 ~~ 462 (983)
.+
T Consensus 565 ~~ 566 (588)
T TIGR01504 565 EI 566 (588)
T ss_pred CH
Confidence 33
No 4
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-58 Score=544.22 Aligned_cols=395 Identities=14% Similarity=0.111 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|.+....... ..+.... . . +...++++.++++++
T Consensus 150 ~~~~i~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~-~-~---~~~~~~~~~i~~aa~ 209 (565)
T PRK06154 150 VPELMRRAFTRLRNGRPGPVVLELPVDVLAEELDEL---------------PLDHRPS-R-R---SRPGADPVEVVEAAA 209 (565)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchHHhhhhcccc---------------cccccCC-C-C---CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999543221100 0000000 0 0 122456778999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|..|..+...++..+++
T Consensus 210 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hpl~--~G~~g~~~~~~~~~~~~~ 280 (565)
T PRK06154 210 LLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLN-G------KSAFPEDHPLA--LGSGGRARPATVAHFLRE 280 (565)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCC-c------ccCCCCCCccc--cCCCCCCCcHHHHHHHHh
Confidence 99999999999999987 45678999999999999999997 6 89999999996 676665554456667899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC------ChhHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR------SSKWCS 233 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~------~~~w~~ 233 (983)
||+||+||++++...+ ++ .+++ .++||||+|+..++++++.++.|.+|++.+|++|.+.+.... ...|.+
T Consensus 281 aDlvL~lG~~l~~~~~-~~--~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 357 (565)
T PRK06154 281 ADVLFGIGCSLTRSYY-GL--PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAA 357 (565)
T ss_pred CCEEEEECCCCccccc-Cc--cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHH
Confidence 9999999999975432 22 2333 479999999999999999999999999999999988765421 235766
Q ss_pred HHHHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 234 FLRALDMMVASEISFQI-CADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+...+..+........ ....++++..++++|++.++ ++.+++.|.|+ +..|..+++++ .+|++|+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~----~~~~~~~~~~~-~~p~~~~------- 425 (565)
T PRK06154 358 EIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGS----PRDQLSPFYVA-SRPGSYL------- 425 (565)
T ss_pred HHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEECCcc----cHHHHHHhCCC-CCCCeEE-------
Confidence 55444333322211111 23457999999999999997 47888889999 66777666664 5666554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|++| ||+|+++||+||++|++++.....
T Consensus 426 ----~~~~~gsmG~--glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpi~~vV~NN~~yg~~~~~~~~ 497 (565)
T PRK06154 426 ----GWGKTTQLGY--GLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR--ERIPILTILLNNFSMGGYDKVMPV 497 (565)
T ss_pred ----ccCCCccccc--HHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEECCccceeehhhhh
Confidence 3567899999 999999999999 9999999999999999999999999 999999999999999998764211
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~~~~~~ 454 (983)
...++.++..++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.++++.
T Consensus 498 ------~~~~~~~~~~~~df~~lA~a~G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 498 ------STTKYRATDISGDYAAIARALGGYGERVEDPEMLVPALLRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred ------hcCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEEEeChHH
Confidence 1112223334689999999999999999999999999999985 689999999998764
No 5
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.7e-58 Score=549.35 Aligned_cols=401 Identities=18% Similarity=0.186 Sum_probs=313.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|+++++|||||+||.|.+......... .+.. .......|...++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~--~~~~~~~p~~~~~~~~i~~~~ 200 (572)
T PRK08979 137 DIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYE--------------YPES--IKMRSYNPTTSGHKGQIKRGL 200 (572)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCHhHhhhhhccccc--------------CCcc--cccccCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999964322110000 0000 000000012234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||+||++ | ||+||++||++ +|.+|..++..++..++
T Consensus 201 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~~~ 271 (572)
T PRK08979 201 QALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLM-G------LGAFPGTHKNS--LGMLGMHGRYEANMAMH 271 (572)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--ccCCccCCCHHHHHHHH
Confidence 999999999999999986 56678999999999999999997 6 89999999996 78888888877777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------ChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~w~ 232 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|.+.+.... ...|.
T Consensus 272 ~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (572)
T PRK08979 272 NADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWW 351 (572)
T ss_pred hCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHH
Confidence 99999999999987765444333333479999999999999999999999999999999988664321 13565
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+++...+...... ......++++.++++.|++.++++.+++.|+|+ +..|..+++.+ .+|++|+
T Consensus 352 ~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-------- 415 (572)
T PRK08979 352 NEIEVWRSRNCLA---YDKSSERIKPQQVIETLYKLTNGDAYVASDVGQ----HQMFAALYYPF-DKPRRWI-------- 415 (572)
T ss_pred HHHHHHHHhCchh---ccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHhcCc-CCCCeEE--------
Confidence 5444332211100 011234699999999999999999999999998 66777777664 5555554
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+...
T Consensus 416 ---~~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r--~~lpv~~vV~NN~~y~~i~~~q~~~ 488 (572)
T PRK08979 416 ---NSGGLGTMGF--GLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQ--YDIPVKIINLNNRFLGMVKQWQDMI 488 (572)
T ss_pred ---ccCCcccccc--hhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHH--cCCCeEEEEEeCCccHHHHHHHHHH
Confidence 3578899999 999999999999 8999999999999999999999999 9999999999999999997532110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDA 454 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~ 454 (983)
. ..+.... ..++||+++|++||+++++|++.+||+++|+++++. ++|+||||.+++++
T Consensus 489 ~-----~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~ 549 (572)
T PRK08979 489 Y-----QGRHSHSYMDSVPDFAKIAEAYGHVGIRISDPDELESGLEKALAMKDRLVFVDINVDETE 549 (572)
T ss_pred h-----CCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 0 0011111 135899999999999999999999999999999975 99999999999755
No 6
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=4.4e-57 Score=510.78 Aligned_cols=355 Identities=19% Similarity=0.226 Sum_probs=294.4
Q ss_pred EeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHhcc
Q 041113 495 ICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFMTG 570 (983)
Q Consensus 495 I~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l~g 570 (983)
|++|+++.+++|++.||.++.+++ ..++.++|||+|++|++||||+.+.. +++++...+...+. .++|.|+|
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~----~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 76 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTM----TEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVG 76 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEE----eeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcC
Confidence 789999999999999999988764 34889999999999999999998652 34555555555554 58999999
Q ss_pred CcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEee
Q 041113 571 AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALI 650 (983)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~ 650 (983)
+++.++..++... .... ...+.+++|||+||||++||.+|+|||+||||.. +++|++|+++
T Consensus 77 ~~~~~~~~~~~~~-----~~~~-----~~~~~a~said~AlwDl~gK~~g~Pv~~LLGg~~---------r~~v~~~~~~ 137 (368)
T TIGR02534 77 RDATEIAAIMADL-----EKVV-----AGNRFAKAAVDTALHDAQARRLGVPVSELLGGRV---------RDSVDVTWTL 137 (368)
T ss_pred CChhhHHHHHHHH-----HHHh-----cCCchHHHHHHHHHHHHHHHHcCCcHHHHhCCCC---------CCceEEEEEE
Confidence 9987765544321 1111 0134589999999999999999999999999975 5789999887
Q ss_pred cCCCCHHHHHHHHHHhh-hcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 651 DSNKSPVEVASIATTLV-EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 651 ~~~~~~~~~~~~~~~~~-~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
.. .++++..+++++++ ++||++||+|+|. .++++|+++|+++|+++|+++.|++|+|++||+++|+++++.|+++++
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~Gf~~~KiKvg~-~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~ 215 (368)
T TIGR02534 138 AS-GDTDRDIAEAEERIEEKRHRSFKLKIGA-RDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV 215 (368)
T ss_pred eC-CCHHHHHHHHHHHHHhcCcceEEEEeCC-CCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh
Confidence 43 44555566677665 4899999999987 378899999999999999999999999999999999999999999999
Q ss_pred ceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 730 QYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 730 ~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
.|||||++ +++++++|++++++||++||++.+..+ +..+++. ++|++|+|++++||++++++++++|+++|+
T Consensus 216 ~~iEeP~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi 290 (368)
T TIGR02534 216 ELIEQPTPAENREALARLTRRFNVPIMADESVTGPAD-----ALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGI 290 (368)
T ss_pred hheECCCCcccHHHHHHHHHhCCCCEEeCcccCCHHH-----HHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCC
Confidence 99999998 678899999999999999999998764 5555544 579999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEAS 882 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~ 882 (983)
+++.||+++++|+.++++|++++++|+.+. ..+....++.+|++.+|+.+++ +|++||||++
T Consensus 291 ~~~~~~~~~s~i~~aa~~h~~a~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 356 (368)
T TIGR02534 291 ALYGGTMLEGPIGTIASAHFFATFPALSFG--------------TELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVE 356 (368)
T ss_pred ceeeecchhhHHHHHHHHHHHHhCCCCccc--------------cccccHHHhhhccccCCceeeCCEEecCCCCcCCcc
Confidence 999999999999999999999998864210 1122334556677778888874 9999999999
Q ss_pred ecchhhhhhhccc
Q 041113 883 VAKATHILQNLQI 895 (983)
Q Consensus 883 ~d~a~~~~~~~~~ 895 (983)
+| ++.+++++.
T Consensus 357 ~d--~~~~~~~~~ 367 (368)
T TIGR02534 357 VD--EDKVNFYRR 367 (368)
T ss_pred cC--HHHHHHhhc
Confidence 99 888888764
No 7
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.3e-58 Score=548.86 Aligned_cols=402 Identities=18% Similarity=0.182 Sum_probs=313.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++||+.|.++++|||||+||.|.+....... + ..+... ......+...++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~-----------~---~~~~~~--~~~~~~~~~~~~~~~i~~a~ 200 (574)
T PRK07979 137 DIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLP-----------Y---VWPESV--SMRSYNPTTQGHKGQIKRAL 200 (574)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEEcChhhhhhhhccc-----------c---ccCccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643211000 0 000000 00000112234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|.+|||++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 201 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 271 (574)
T PRK07979 201 QTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLM-G------LGAFPATHRQS--LGMLGMHGTYEANMTMH 271 (574)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCCccc--ccCCcCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888878777878889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|++.+... ....|.
T Consensus 272 ~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (574)
T PRK07979 272 NADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWW 351 (574)
T ss_pred hCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHH
Confidence 9999999999997776544433333347999999999999999999999999999999998876431 123454
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+.... ........++++..+++.|++.++++++++.|+|+ +..|..+++++ .+|++|+
T Consensus 352 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~-~~p~~~~-------- 415 (574)
T PRK07979 352 QQIEQWRARQC---LKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQ----HQMFAALYYPF-DKPRRWI-------- 415 (574)
T ss_pred HHHHHHHHhCh---hhccCCCCCcCHHHHHHHHHhhcCCCEEEEeCCcH----HHHHHHHhccc-CCCCeEE--------
Confidence 44333222110 01001234699999999999999999999999998 67777777664 5555544
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+...
T Consensus 416 ---~~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r--~~l~v~ivV~NN~~yg~i~~~q~~~ 488 (574)
T PRK07979 416 ---NSGGLGTMGF--GLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQ--YELPVLVLNLNNRYLGMVKQWQDMI 488 (574)
T ss_pred ---eCCCccchhh--HHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCchhhHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc---CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL---GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~---~~p~lIeV~~~~~~~ 455 (983)
. ..+.... ..++||+++|++||+++++|++.+||+++|+++++. ++|+||||.++++++
T Consensus 489 ~-----~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV~i~~~~~ 552 (574)
T PRK07979 489 Y-----SGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPDELESKLSEALEQVRNNRLVFVDVTVDGSEH 552 (574)
T ss_pred c-----CCccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhccCCCCcEEEEEEECCccC
Confidence 0 0111111 135899999999999999999999999999999875 899999999997653
No 8
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.8e-57 Score=510.22 Aligned_cols=352 Identities=19% Similarity=0.221 Sum_probs=294.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC---cCcccHHHHHHHHH-HHHhHhc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IHKENLLDAEEQLR-FLLHFMT 569 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~---~~~~~~~~~~~~l~-~~~~~l~ 569 (983)
||++|+++.+++|++.|+.++.+.+ ..++.++|||+|++|++||||+.+.+ ++.++...+...++ .+.|.++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~----~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 76 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTM----HTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLI 76 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeE----eecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHc
Confidence 6999999999999999999987754 34889999999999999999998764 44555555555554 5789999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.++..++..+ +... . ..+.+++||||||||++||.+|+|+|+||||.. +++|++|++
T Consensus 77 G~~~~~~~~~~~~l-----~~~~--~---~~~~a~said~AlwDl~gK~~g~Pl~~LLGg~~---------~~~v~~~~~ 137 (365)
T cd03318 77 GRDATNIGAAMALL-----DRAV--A---GNLFAKAAIEMALLDAQGRRLGLPVSELLGGRV---------RDSLPVAWT 137 (365)
T ss_pred CCChHHHHHHHHHH-----HHHh--c---CCccHHHHHHHHHHHHHHhHcCCCHHHHcCCCc---------CCceEEEEE
Confidence 99988765544321 1111 0 135689999999999999999999999999975 478999988
Q ss_pred ecCCCCHHHHHHHHHHhhhcC-CCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCC
Q 041113 650 IDSNKSPVEVASIATTLVEEG-FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~ 728 (983)
+. ..+++++.+++++++++| |++||+|+|. .++++|+++|+++|+.+|+++.||+|+|++||.++|+++++.|++++
T Consensus 138 ~~-~~~~~~~~~~~~~~~~~G~f~~~KiKvg~-~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~ 215 (365)
T cd03318 138 LA-SGDTERDIAEAEEMLEAGRHRRFKLKMGA-RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAG 215 (365)
T ss_pred Ee-CCCHHHHHHHHHHHHhCCCceEEEEEeCC-CChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 63 346677888899999999 9999999996 36889999999999999999999999999999999999999999999
Q ss_pred CceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcC
Q 041113 729 LQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHG 805 (983)
Q Consensus 729 i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~g 805 (983)
+.|||||++ +++++++|++++++||++||++.++.+ +..+++.+ +|++|+|++++||++++++++++|+++|
T Consensus 216 ~~~iEeP~~~~~~~~~~~l~~~~~~pia~dE~~~~~~~-----~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~g 290 (365)
T cd03318 216 VELIEQPVPRENLDGLARLRSRNRVPIMADESVSGPAD-----AFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAG 290 (365)
T ss_pred cceeeCCCCcccHHHHHHHHhhcCCCEEcCcccCCHHH-----HHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcC
Confidence 999999998 688899999999999999999998764 66666554 6999999999999999999999999999
Q ss_pred CcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeE
Q 041113 806 KMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEA 881 (983)
Q Consensus 806 i~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv 881 (983)
+++++||+++++|+.++++|++++++|..+ .+.+....++.+|++.+|+.+++ +|++||||+
T Consensus 291 i~~~~~~~~~s~i~~aa~~hlaaa~~~~~~--------------~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv 356 (365)
T cd03318 291 IALYGGTMLESSIGTAASAHLFATLPSLPF--------------GCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGV 356 (365)
T ss_pred CceeecCcchhHHHHHHHHHHHHhCCCCcc--------------cccccchHhhhcccccCCceeECCEEeCCCCCcCCc
Confidence 999999999999999999999999885310 01112223455677778888874 999999999
Q ss_pred Eecchhhhhh
Q 041113 882 SVAKATHILQ 891 (983)
Q Consensus 882 ~~d~a~~~~~ 891 (983)
++| ++.++
T Consensus 357 ~~d--~~~l~ 364 (365)
T cd03318 357 RLD--EDKVR 364 (365)
T ss_pred ccC--HHHhc
Confidence 999 66543
No 9
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-57 Score=544.95 Aligned_cols=400 Identities=14% Similarity=0.154 Sum_probs=311.1
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|++....... .+... +....+.+.+.++++.+++++
T Consensus 144 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~l~~a~ 206 (595)
T PRK09107 144 DLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYT----------------PPQKA-PVHVSYQPKVKGDAEAITEAV 206 (595)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCChhhcccccc----------------ccccc-ccccCCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 00000 000000112235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hh--HHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-ED--EIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKD 157 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~--~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~ 157 (983)
++|++||||+||+|+|+. ++ +.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++......
T Consensus 207 ~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~-g------kg~~p~~hpl~--~G~~G~~~~~~~~~~ 277 (595)
T PRK09107 207 ELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLM-G------LGAYPASGKNW--LGMLGMHGTYEANMA 277 (595)
T ss_pred HHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECcc-c------cccCCCCCCcc--cCCCCCCccHHHHHH
Confidence 999999999999999986 33 678999999999999999997 6 89999999996 788887777777778
Q ss_pred cCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------Chh
Q 041113 158 WIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSK 230 (983)
Q Consensus 158 ~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~ 230 (983)
+++||+||+||+++++..+..|....+..++||||.|+..++++++.++.|++|++.+|++|.+.+.... ...
T Consensus 278 l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~ 357 (595)
T PRK09107 278 MHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALAD 357 (595)
T ss_pred HHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHH
Confidence 8999999999999977665444333334579999999999999999999999999999999988764311 234
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCC
Q 041113 231 WCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF 309 (983)
Q Consensus 231 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 309 (983)
|.+.+.+.+.... ........++++..+++.|++.++ ++.+++.|+|+ +..|..+++++ ++|++|+
T Consensus 358 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~----~~~~~~~~~~~-~~p~~~~----- 424 (595)
T PRK09107 358 WWGQIARWRARNS---LAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQ----HQMWAAQFFGF-EEPNRWM----- 424 (595)
T ss_pred HHHHHHHHHHhCh---hhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----
Confidence 5443332222100 010112356999999999999997 57788899998 77788777775 5666555
Q ss_pred CCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 310 PHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 310 ~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||||++|||+|++| |++|+++||+||++|++++..+
T Consensus 425 ------~~~~~gsmG~--glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r--~~lpvi~vV~NN~~y~~i~~~q 494 (595)
T PRK09107 425 ------TSGGLGTMGY--GLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQ--YNLPVKIFILNNQYMGMVRQWQ 494 (595)
T ss_pred ------cCCCchhhhh--hHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987532
Q ss_pred CCCCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 389 IADRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
... ...++... ..++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++.+
T Consensus 495 ~~~-----~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 557 (595)
T PRK09107 495 QLL-----HGNRLSHSYTEAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDCRVANLE 557 (595)
T ss_pred HHH-----hCCccccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCcc
Confidence 100 00111111 13589999999999999999999999999999999999999999999755
No 10
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-57 Score=543.68 Aligned_cols=397 Identities=18% Similarity=0.199 Sum_probs=311.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++|++.|+++|||||||+||.|.+..+.... . . ...+... +.+...+++..+++++
T Consensus 143 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~----------~-~~~~~~~------~~~~~~~~~~~i~~~~ 204 (566)
T PRK07282 143 DIPRIITEAVHIATTGRPGPVVIDLPKDVSALETDFI-Y----------D-PEVNLPS------YQPTLEPNDMQIKKIL 204 (566)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCChhhhhhhhccc-c----------c-ccccccC------CCCCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643221100 0 0 0000000 0012234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 205 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~-g------kg~ip~~hpl~--~G~~G~~~~~~~~~~~~ 275 (566)
T PRK07282 205 KQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLL-G------QGTIATSHPLF--LGMGGMHGSYAANIAMT 275 (566)
T ss_pred HHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccc-c------CCCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 67888777666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~~ 238 (983)
+||+||+||+++.+..+..+....+..++||||+|+..++++++.++.+++|++.+|++|++.+... ....|.+++...
T Consensus 276 ~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 355 (566)
T PRK07282 276 EADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKD 355 (566)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHH
Confidence 9999999999997765543333233347999999999999999999999999999999999876432 234676655433
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.... .......++++.++++.|++.++++++++.|+|+ +..|..+++.+ ++|++|+ .++
T Consensus 356 ~~~~~----~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 415 (566)
T PRK07282 356 KNRVR----SYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQ----HQMWAAQYYPY-QNERQLV-----------TSG 415 (566)
T ss_pred HHhch----hccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcH----HHHHHHHhccc-CCCCcEe-----------cCC
Confidence 32211 1111234799999999999999999999999998 66676666664 5555554 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .
T Consensus 416 ~~g~mG~--glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~~vV~NN~~y~~i~~~q~~------~ 485 (566)
T PRK07282 416 GLGTMGF--GIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNI--YKVPIKVVMLNNHSLGMVRQWQES------F 485 (566)
T ss_pred ccccccc--hhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCCchHHHHHHHH------H
Confidence 8899999 999999999999 9999999999999999999999999 999999999999999999764210 0
Q ss_pred cc-ccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LD-QYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~-~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+. +.... ..++||.++|++||+++.+|++.+||+++|+. +..++|+||||.++++++
T Consensus 486 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~-~~~~~p~lIeV~v~~~~~ 545 (566)
T PRK07282 486 YEGRTSESVFDTLPDFQLMAQAYGIKHYKFDNPETLAQDLEV-ITEDVPMLIEVDISRKEH 545 (566)
T ss_pred hCCCcccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHH-hcCCCCEEEEEEeCCccc
Confidence 11 11111 14689999999999999999999999999985 567999999999997653
No 11
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.6e-57 Score=544.82 Aligned_cols=400 Identities=15% Similarity=0.176 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++++|||||+||.|.+........ ..+... +.+.+...++++.+++++
T Consensus 154 ~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~i~~~~ 215 (587)
T PRK06965 154 DLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEY--------------PKSVEM----RSYNPVTKGHSGQIRKAV 215 (587)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhcccc--------------Cccccc----cCCCCCCCCCHHHHHHHH
Confidence 36789999999999999999999999996432221000 000000 000111234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 216 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-g------kg~~~~~hpl~--~G~~G~~~~~~a~~~~~ 286 (587)
T PRK06965 216 SLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLM-G------LGAYPASDKKF--LGMLGMHGTYEANMAMQ 286 (587)
T ss_pred HHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 46678999999999999999997 6 89999999995 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKW 231 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w 231 (983)
+||+||+||+++++..+..+....++ .++||||.|+..++++++.++.+++|++.+|++|++.+... ....|
T Consensus 287 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 366 (587)
T PRK06965 287 HCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQW 366 (587)
T ss_pred hCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHH
Confidence 99999999999976654323222223 47999999999999999999999999999999998866421 12344
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+...+..... .......++++..+++.|++.+|++++++.|+|+ +..|..+++++ .+|++|+
T Consensus 367 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~d~G~----~~~~~~~~~~~-~~p~~~~------- 431 (587)
T PRK06965 367 WKQIEGWRSRDCL---KYDRESEIIKPQYVVEKLWELTDGDAFVCSDVGQ----HQMWAAQFYRF-NEPRRWI------- 431 (587)
T ss_pred HHHHHHHHHhChh---hccccCCCcCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-------
Confidence 4433322211100 0001234699999999999999999999999998 66777777664 5666555
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+..
T Consensus 432 ----~~~~~gsmG~--glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r--~~lpviivV~NN~~~~~i~~~q~~ 503 (587)
T PRK06965 432 ----NSGGLGTMGV--GLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQ--YDTPVKIISLNNRYLGMVRQWQEI 503 (587)
T ss_pred ----cCCCcccccc--hHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH--cCCCeEEEEEECCcchHHHHHHHH
Confidence 3578899999 999999999999 9999999999999999999999999 999999999999999999764211
Q ss_pred CCCCccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccc
Q 041113 391 DRTEPRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDAN 455 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~ 455 (983)
.. ..++..+. .++||.++|++||+++++|++.+||+++|+++++ .++|+||||.+++++.
T Consensus 504 ~~-----~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV~i~~~~~ 566 (587)
T PRK06965 504 EY-----SKRYSHSYMDALPDFVKLAEAYGHVGMRIEKTSDVEPALREALRLKDRTVFLDFQTDPTEN 566 (587)
T ss_pred hc-----CCCccccCCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 10 11111111 3589999999999999999999999999999987 4899999999997664
No 12
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.7e-57 Score=538.58 Aligned_cols=399 Identities=15% Similarity=0.214 Sum_probs=314.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|.+..+.... +. ..... ....+...++++.+++++
T Consensus 147 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~-----------~~---~~~~~----~~~~~~~~~~~~~~~~~~ 208 (570)
T PRK06725 147 QLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSF-----------YN---EVVEI----PGYKPEPRPDSMKLREVA 208 (570)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEccccchhhcccccc-----------cC---ccccc----ccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 00 00000 000012245667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 209 ~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-~------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 279 (570)
T PRK06725 209 KAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLM-G------LGAYPPGDPLF--LGMLGMHGTYAANMAVT 279 (570)
T ss_pred HHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCc-c------CcCCCCCChhh--cCCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+|||||+||+++++..+..+....+..++||||.|+..++++++.++.|.+|++.+|++|.+.+.......|.+.+...+
T Consensus 280 ~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 359 (570)
T PRK06725 280 ECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWK 359 (570)
T ss_pred hCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 99999999999977665433222223469999999999999999999999999999999988765433455665554433
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
........ ....++++..+++.|++.+|++++++.|+|+ +..|..+++.+ .+|++|+ .+++
T Consensus 360 ~~~~~~~~---~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~~~~ 420 (570)
T PRK06725 360 EEYPLSYK---QKESELKPQHVINLVSELTNGEAIVTTEVGQ----HQMWAAHFYKA-KNPRTFL-----------TSGG 420 (570)
T ss_pred HhChhhhc---ccCCCcCHHHHHHHHHhhCCCCcEEEeCCcH----HHHHHHHhccc-cCCCeEE-----------ccCC
Confidence 32111111 1235799999999999999999999999998 66666666654 5555544 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. .+
T Consensus 421 ~gsmG~--~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~--~~lpi~~vV~NN~~~~~~~~~q~~------~~ 490 (570)
T PRK06725 421 LGTMGF--GFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAE--NNIPVKVFIINNKFLGMVRQWQEM------FY 490 (570)
T ss_pred cccccc--hhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHH--hCCCeEEEEEECCccHHHHHHHHH------hc
Confidence 899999 999999999999 9999999999999999999999999 999999999999999998753211 11
Q ss_pred c-ccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 D-QYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~-~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+ ++... ..++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+++++.
T Consensus 491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~id~~~~ 549 (570)
T PRK06725 491 ENRLSESKIGSPDFVKVAEAYGVKGLRATNSTEAKQVMLEAFAHEGPVVVDFCVEEGEN 549 (570)
T ss_pred CCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCccc
Confidence 1 11111 236999999999999999999999999999999999999999999997653
No 13
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=3.5e-57 Score=540.35 Aligned_cols=399 Identities=17% Similarity=0.179 Sum_probs=313.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|++++||||||+||.|.+....... .+... ....+.+...++++.+++++
T Consensus 140 ~i~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------------~~~~~--~~~~~~~~~~~~~~~i~~~a 201 (561)
T PRK06048 140 DLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFD----------------YPDKV--ELRGYKPTYKGNPQQIKRAA 201 (561)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEecChhhhhcccccc----------------cCccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999998643221100 00000 00000112235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..++
T Consensus 202 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~-~------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~ 272 (561)
T PRK06048 202 ELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLM-G------IGAIPTEHPLS--LGMLGMHGTKYANYAIQ 272 (561)
T ss_pred HHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccc-c------CccCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 68888777666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++++..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+.......|.+.+....
T Consensus 273 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 352 (561)
T PRK06048 273 ESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWK 352 (561)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 99999999999976665444332333579999999999999999999999999999999998775444456766554433
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
...... ......++++..+++.|++.+| +.+++.|+|+ +..|..+++.+ .+|++|+ .+++
T Consensus 353 ~~~~~~---~~~~~~~l~~~~~~~~l~~~~p-~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 412 (561)
T PRK06048 353 KEYPLK---YKEREDVIKPQYVIEQIYELCP-DAIIVTEVGQ----HQMWAAQYFKY-KYPRTFI-----------TSGG 412 (561)
T ss_pred HhChhh---ccCCCCCcCHHHHHHHHHhhCC-CcEEEEcCcH----HHHHHHHhccc-CCCCeEE-----------eCCC
Confidence 221110 0112457999999999999998 7899999998 56666666654 4554444 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+... ..
T Consensus 413 ~g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~~vV~NN~~y~~i~~~~~~~-----~~ 483 (561)
T PRK06048 413 LGTMGY--GFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQ--NDIPVIVAILNNGYLGMVRQWQELF-----YD 483 (561)
T ss_pred cccccc--HHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHH--cCCCeEEEEEECCccHHHHHHHHHH-----cC
Confidence 899999 999999999999 8999999999999999999999999 9999999999999999987532100 01
Q ss_pred ccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 DQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.++..+. +++||.++|++||+++.+|++.+||+++|+++++.++|+||||.++++++
T Consensus 484 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~~~~p~liev~~~~~~~ 542 (561)
T PRK06048 484 KRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVASDRPVVIDFIVECEEN 542 (561)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 1111221 57999999999999999999999999999999999999999999997664
No 14
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2.7e-57 Score=545.91 Aligned_cols=400 Identities=17% Similarity=0.195 Sum_probs=312.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|.+....... ...+... ......+.+.++++.+++++
T Consensus 155 ~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~v~~~~ 218 (616)
T PRK07418 155 DMARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFDYV--------------PVEPGSV--KPPGYRPTVKGNPRQINAAL 218 (616)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecchhhhhchhccc--------------ccCcccc--ccCCCCCCCCCCHHHHHHHH
Confidence 4789999999999999999999999998643221100 0000000 00000011345677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.++|++|||++|+||++|++ | ||+||++||++ +|.+|..++..++..++
T Consensus 219 ~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~-g------kg~~p~~hpl~--~G~~G~~g~~~~~~~l~ 289 (616)
T PRK07418 219 KLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLM-G------KGAFDEHHPLS--VGMLGMHGTAYANFAVT 289 (616)
T ss_pred HHHHhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccC-C------CcCCCCCCccc--ccCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC----ChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR----SSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~----~~~w~~~~ 235 (983)
+||+||+||+++++..+..+....+..++||||.|+..+++++..++.|.+|++.+|++|++.+.... ...|.+.+
T Consensus 290 ~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 369 (616)
T PRK07418 290 ECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERI 369 (616)
T ss_pred hCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHH
Confidence 99999999999976655433222223479999999999999999999999999999999998774322 34565554
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
+..+..... .......++++.+++++|++.++ +++++.|.|+ +..|..+++. .+|++|+
T Consensus 370 ~~~~~~~~~---~~~~~~~~l~~~~v~~~l~~~~~-d~i~~~D~G~----~~~~~~~~~~--~~p~~~~----------- 428 (616)
T PRK07418 370 NRWKQDYPL---VVPPYEGEIYPQEVLLAVRDLAP-DAYYTTDVGQ----HQMWAAQFLR--NGPRRWI----------- 428 (616)
T ss_pred HHHHHhCcc---cccCCCCCcCHHHHHHHHHhhCC-CcEEEECChH----HHHHHHHhhh--cCCCeEE-----------
Confidence 433322110 00112457999999999999998 5899999998 6777766554 2344333
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+||||++|. +|+||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 429 ~s~~~g~mG~--glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r--~~lpvi~vV~NN~~~g~i~~~q~~~--- 501 (616)
T PRK07418 429 SSAGLGTMGF--GMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQ--YGINVKTVIINNGWQGMVRQWQESF--- 501 (616)
T ss_pred cCCCcccccc--HHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHHHh---
Confidence 4678999999 999999999999 9999999999999999999999999 9999999999999999987542110
Q ss_pred ccccccccccC---CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 395 PRILDQYFYTT---HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 395 ~~~~~~~~~~~---~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...++..+. +.+||+++|++||+++++|++++||+++|+++++.++|+||||.++++++
T Consensus 502 --~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 563 (616)
T PRK07418 502 --YGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAEALAHDGPVLIDVHVRRDEN 563 (616)
T ss_pred --cCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 011122221 35899999999999999999999999999999999999999999997664
No 15
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4e-57 Score=541.32 Aligned_cols=404 Identities=15% Similarity=0.168 Sum_probs=310.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|||||||+||.|.+......... .+... ......+...++.+.+++++
T Consensus 137 ~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~i~~~~ 200 (574)
T PRK06466 137 EIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYE--------------YPKKV--KLRSYSPAVRGHSGQIRKAV 200 (574)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhccccc--------------cCccc--ccccCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999953211100000 00000 00000011234566799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 201 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-~------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~ 271 (574)
T PRK06466 201 EMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLM-G------LGGFPGTDRQF--LGMLGMHGTYEANMAMH 271 (574)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCc-c------CCCCCCCChhh--cCCCccccCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777666767889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+||+||++|+++++..+..|....+..++||||.|+..++++++.++.+.+|++.+|++|.+.+... ....|.
T Consensus 272 ~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 351 (574)
T PRK06466 272 HADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWW 351 (574)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHH
Confidence 9999999999998766554433333347999999999999999999999999999999998866321 112454
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+..... .......+.++++.++++.|++.+|++.+++.|.|+ +..|..+++.+ .+|++|+
T Consensus 352 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~p~~~~-------- 417 (574)
T PRK06466 352 KQIDEWRGRHGL-FPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQ----HQMFAAQYYKF-NKPNRWI-------- 417 (574)
T ss_pred HHHHHHHHhCcc-hhcccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-cCCCcEE--------
Confidence 444332221100 000011234699999999999999999999999998 66677666664 5555554
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 418 ---~~~~~gsmG~--glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r--~~lpv~ivV~NN~~y~~i~~~q~~~ 490 (574)
T PRK06466 418 ---NSGGLGTMGF--GLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQ--YGLPVKIINLNNGALGMVRQWQDMQ 490 (574)
T ss_pred ---cCCCcchhhc--hHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999997642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
. ..++..+ ...+||.++|++||+++.+|++.+||+++|+++++. ++|+||||.+++++.
T Consensus 491 ~-----~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~p~lIev~i~~~~~ 552 (574)
T PRK06466 491 Y-----EGRHSHSYMESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAFAMKDRLVFIDIYVDRSEH 552 (574)
T ss_pred c-----CCceeecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEeCCccc
Confidence 0 0111111 235899999999999999999999999999999985 999999999997553
No 16
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=3.8e-57 Score=539.71 Aligned_cols=392 Identities=18% Similarity=0.222 Sum_probs=313.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++.+++||++.|++++||||||+||.|++..+.... .+.... . ....++++.+++++
T Consensus 133 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------------~~~~~~---~---~~~~~~~~~l~~~~ 190 (548)
T PRK08978 133 ELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEGELE----------------PHLTTV---E---NEPAFPAAELEQAR 190 (548)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecChhhhhcccccc----------------cccccc---C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999654332100 000000 0 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|.|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..++
T Consensus 191 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~ 261 (548)
T PRK08978 191 ALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLK-G------LGAVEADHPYY--LGMLGMHGTKAANLAVQ 261 (548)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------CCCCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888766666777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
+||+||++|+++++..+. +...+.+ .++||||.|+..+++++..++.|.+|++.++++|.+.+. ...|.+.+...
T Consensus 262 ~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~~---~~~~~~~~~~~ 337 (548)
T PRK08978 262 ECDLLIAVGARFDDRVTG-KLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPLN---IDAWRQHCAQL 337 (548)
T ss_pred hCCEEEEEcCCCCccccC-CccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc---chHHHHHHHHH
Confidence 999999999998765543 3222333 479999999999999999999999999999999987652 34577666544
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+....... .....++++..++++|++.++++++++.|.|+ +..|...++.+ ++|++|+ .++
T Consensus 338 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~ 398 (548)
T PRK08978 338 RAEHAWRY---DHPGEAIYAPALLKQLSDRKPADTVVTTDVGQ----HQMWVAQHMRF-TRPENFI-----------TSS 398 (548)
T ss_pred HHhCchhc---cCCCCCcCHHHHHHHHHHhCCCCcEEEecCcH----HHHHHHHhccc-CCCCeEE-----------eCC
Confidence 33221111 11234699999999999999999999999998 66676666654 5565554 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+... .
T Consensus 399 ~~g~mG~--glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~l~v~ivV~NN~~~~~~~~~~~~~-----~ 469 (548)
T PRK08978 399 GLGTMGF--GLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKR--KQLPVKIVLLDNQRLGMVRQWQQLF-----F 469 (548)
T ss_pred chhhhhc--hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHHH-----h
Confidence 8899999 999999999999 9999999999999999999999999 9999999999999999997642110 0
Q ss_pred ccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..++..+ .+++||.++|++||+++++|++.+||+++|+++++.++|.||||.+++++.
T Consensus 470 ~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~id~~~~ 529 (548)
T PRK08978 470 DERYSETDLSDNPDFVMLASAFGIPGQTITRKDQVEAALDTLLNSEGPYLLHVSIDELEN 529 (548)
T ss_pred CCcceecCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 1122222 246999999999999999999999999999999999999999999998664
No 17
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=6.9e-57 Score=540.50 Aligned_cols=402 Identities=15% Similarity=0.191 Sum_probs=310.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|++..+.... . ........ ..+.++++.++++++
T Consensus 139 ~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~--~-------------~~~~~~~~-----~~~~~~~~~i~~~~~ 198 (591)
T PRK11269 139 VPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFD--P-------------DTYEPLPV-----YKPAATRAQIEKALE 198 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEeChhhhhcccccc--c-------------cccccccc-----CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999644332100 0 00000000 012346678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~~ 159 (983)
+|++||||+||+|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|.. +...++..++
T Consensus 199 ~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~-g------kg~~p~~hpl~--~G~~g~~~~~~~~~~~~~ 269 (591)
T PRK11269 199 MLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLM-G------WGAIPDDHPLM--AGMVGLQTSHRYGNATLL 269 (591)
T ss_pred HHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEeccc-c------cCcCCCCChhh--ccCCcCCCCcHHHHHHHH
Confidence 99999999999999986 45678999999999999999996 7 89999999996 7888754 3444556788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-------CCChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-------HRSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-------~~~~~w~ 232 (983)
+||+||+||+++++..+.+|....+..++||||+|+..++++++.++.+++|++.+|++|.+.+.. .....|.
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 349 (591)
T PRK11269 270 ASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWV 349 (591)
T ss_pred hCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHH
Confidence 999999999999876664443322334799999999999999999999999999999999886632 1224566
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+....... ...+.++++..+++.|++.+|++++++.|.|+ +..|..+++++ .+|++|+
T Consensus 350 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~d~ivv~d~g~----~~~~~~~~~~~-~~p~~~~-------- 413 (591)
T PRK11269 350 ADCQERKRTLLRKT---HFDNVPIKPQRVYEEMNKAFGRDTCYVSTIGL----SQIAAAQFLHV-YKPRHWI-------- 413 (591)
T ss_pred HHHHHHHHhchhhc---cCCCCCcCHHHHHHHHHHhcCCCcEEEECCcH----HHHHHHHhccc-CCCCcEE--------
Confidence 55544433221110 11234699999999999999999999999988 66676666654 4555443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++||+++..+...
T Consensus 414 ---~~~~~G~mG~--glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~--~~lpv~~vV~NN~~~g~i~~~~~~~ 486 (591)
T PRK11269 414 ---NCGQAGPLGW--TIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQ--FNLPYIHVLVNNAYLGLIRQAQRAF 486 (591)
T ss_pred ---eCCccccccc--hhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHH--hCCCeEEEEEeCCchhHHHHHHHHh
Confidence 3577899999 999999999999 9999999999999999999999999 9999999999999999997653210
Q ss_pred CCC---ccccccccc---cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccc
Q 041113 392 RTE---PRILDQYFY---TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~---~~~~~~~~~---~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~ 455 (983)
... ...++.... ..+++||+++|++||+++.+|++.+||+++|+++++ .++|+||||.++++..
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lieV~v~~~~~ 560 (591)
T PRK11269 487 DMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVEVILERVTN 560 (591)
T ss_pred ccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEEEEeccccC
Confidence 000 000111000 114699999999999999999999999999999984 7899999999998764
No 18
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=8.2e-57 Score=537.39 Aligned_cols=401 Identities=17% Similarity=0.174 Sum_probs=314.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|.+..+.... .+... ..+...+...++++.+++++
T Consensus 136 ~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~--~~~~~~~~~~~~~~~i~~~~ 197 (563)
T PRK08527 136 ELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFE----------------YPKEI--SLKTYKPTYKGNSRQIKKAA 197 (563)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhccc----------------ccccc--ccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221000 00000 00000011234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|++ .++.++|++|+|++++||++|++ | ||+||++||++ +|.+|..++...+..+.
T Consensus 198 ~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-~------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~ 268 (563)
T PRK08527 198 EAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLM-A------RGVLRSDDPLL--LGMLGMHGSYAANMAMS 268 (563)
T ss_pred HHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------CCCCCCCChhh--cCCCcccCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+||+||+||+++++..+..|....+..++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.+.
T Consensus 269 ~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 348 (563)
T PRK08527 269 ECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILK 348 (563)
T ss_pred hCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHH
Confidence 9999999999997766544433333347999999999999999999999999999999999876432 2245665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+..... ......+++++.++++.|++.+|++++++.|+|+ +..|..+++.+ .+|++|+ .
T Consensus 349 ~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~ 409 (563)
T PRK08527 349 RYNELHPL---SYEDSDEVLKPQWVIERVGELLGDDAIISTDVGQ----HQMWVAQFYPF-NYPRQLA-----------T 409 (563)
T ss_pred HHHHhCcc---cccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----------c
Confidence 33221110 0011235799999999999999999999999998 66676666554 4555544 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 410 ~~~~g~mG~--~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~lpvi~vV~NN~~~~~i~~~~~~~---- 481 (563)
T PRK08527 410 SGGLGTMGY--GLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVE--YKIPVINIILNNNFLGMVRQWQTFF---- 481 (563)
T ss_pred CCCcccccc--hHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHH--hCCCeEEEEEECCcchhHHHHHHhh----
Confidence 688899999 999999999999 8999999999999999999999999 9999999999999999997642110
Q ss_pred cccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 396 RILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 396 ~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
...++..+. +++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++.++.
T Consensus 482 -~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~v~~~~~~ 543 (563)
T PRK08527 482 -YEERYSETDLSTQPDFVKLAESFGGIGFRVTTKEEFDKALKEALESDKVALIDVKIDRFENV 543 (563)
T ss_pred -cCCceeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCcccc
Confidence 001111221 358999999999999999999999999999999999999999999986643
No 19
>PLN02470 acetolactate synthase
Probab=100.00 E-value=1e-56 Score=538.30 Aligned_cols=404 Identities=16% Similarity=0.183 Sum_probs=311.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|.++|+|||||+||.|.+....... |.. ..+...... . ....++++.+++++
T Consensus 146 ~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~-----------~~~-~~~~~~~~~-~---~~~~~~~~~i~~~~ 209 (585)
T PLN02470 146 DIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVPN-----------WNQ-PMKLPGYLS-R---LPKPPEKSQLEQIV 209 (585)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEecCchhhhhcccc-----------ccc-cccccccCC-C---CCCCCCHHHHHHHH
Confidence 3788999999999999999999999999643221100 000 000000000 0 01234567899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|+. .+.+++.+|+|++++||++|++ | ||+||++||++ +|.+|..+...++..+++
T Consensus 210 ~~L~~A~rPvI~~G~g~~-~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hpl~--~G~~G~~~~~~~~~~~~~ 279 (585)
T PLN02470 210 RLISESKRPVVYVGGGCL-NSSEELREFVELTGIPVASTLM-G------LGAFPASDELS--LQMLGMHGTVYANYAVDS 279 (585)
T ss_pred HHHHcCCCCEEEECCChh-hhHHHHHHHHHHhCCCEEEccC-c------cccCCCCCccc--ccCCCCCCCHHHHHHHHh
Confidence 999999999999999986 4567999999999999999997 6 89999999996 678887777677778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-----CChhHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWCSFL 235 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~~~~ 235 (983)
||+||+||+++++..+..+....+..++||||+|+..++++++.++.|++|++.+|++|++.+... ....|.+.+
T Consensus 280 aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 359 (585)
T PLN02470 280 ADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAEL 359 (585)
T ss_pred CCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence 999999999997665543333223346999999999999999999999999999999998876432 124565544
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
.+.+.+..... .....++++..+++.|++.+|++.+++.|.|+ +..|..+++.+ .+|++|+
T Consensus 360 ~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~~~~d~iv~~d~G~----~~~~~~~~~~~-~~p~~~~----------- 420 (585)
T PLN02470 360 DEQKEKFPLSY---PTFGDAIPPQYAIQVLDELTDGNAIISTGVGQ----HQMWAAQWYKY-KEPRRWL----------- 420 (585)
T ss_pred HHHHHhChhcc---cCCCCCcCHHHHHHHHHhhCCCCEEEEECCcH----HHHHHHHhccc-CCCCeEE-----------
Confidence 43322211110 01124799999999999999999999999998 67777777664 5555554
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|+++++.+.....
T Consensus 421 ~~~~~g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~l~v~ivV~NN~~yg~i~~~~~~~~~- 495 (585)
T PLN02470 421 TSGGLGAMGF--GLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHV--ENLPVKIMVLNNQHLGMVVQWEDRFYK- 495 (585)
T ss_pred cCCccccccc--hHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHHHhC-
Confidence 3588899999 999999999999 9999999999999999999999999 999999999999999998754211000
Q ss_pred ccccccccccC-----CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 395 PRILDQYFYTT-----HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 395 ~~~~~~~~~~~-----~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.......+..+ ..+||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++
T Consensus 496 ~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~i~~~~ 560 (585)
T PLN02470 496 ANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLDTPGPYLLDVIVPHQE 560 (585)
T ss_pred CceeeeecCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCcc
Confidence 00011111111 2389999999999999999999999999999999999999999999755
No 20
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.4e-56 Score=536.16 Aligned_cols=399 Identities=16% Similarity=0.208 Sum_probs=315.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++..+++|++.|+++|+|||||+||.|++..+.... ..+.... . . +...++++.+++++
T Consensus 146 ~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~---------------~~~~~~~-~-~---~~~~~~~~~i~~~~ 205 (564)
T PRK08155 146 ELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELE---------------ALPAPAE-K-D---AAPAFDEESIRDAA 205 (564)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHHhhhcccc---------------cCCCccc-c-C---CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643332100 0010000 0 0 11234566899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+....+..++
T Consensus 206 ~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~i~~~hp~~--~G~~g~~~~~~~~~~l~ 276 (564)
T PRK08155 206 AMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLM-A------LGMLPKAHPLS--LGMLGMHGARSTNYILQ 276 (564)
T ss_pred HHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 78888766666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++.+..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+.......|.+.+...+
T Consensus 277 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 356 (564)
T PRK08155 277 EADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQ 356 (564)
T ss_pred hCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 99999999999987765444333334579999999999999999999999999999999988765444456766554443
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
+...... ...+.++++..+++.|++.+|++.+++.|+|+ +..|..+++++ .+|++|+ .+++
T Consensus 357 ~~~~~~~---~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 417 (564)
T PRK08155 357 REFPCPI---PKADDPLSHYGLINAVAACVDDNAIITTDVGQ----HQMWTAQAYPL-NRPRQWL-----------TSGG 417 (564)
T ss_pred HhChhhc---ccCCCCcCHHHHHHHHHHhCCCCeEEEECCch----HHHHHHHhccc-cCCCeEE-----------eCCC
Confidence 3221111 11234799999999999999999999999998 66666666664 4555444 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ...
T Consensus 418 ~g~mG~--~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~--~~lpvi~vV~NN~~~g~~~~~q~~-----~~~ 488 (564)
T PRK08155 418 LGTMGF--GLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAE--NQLDVKIILMNNEALGLVHQQQSL-----FYG 488 (564)
T ss_pred cccccc--hhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHH--hCCCeEEEEEeCCcccccHHHHHH-----hcC
Confidence 899999 999999999999 8999999999999999999999999 999999999999999998753211 011
Q ss_pred cccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 399 DQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 399 ~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
.+++.. ..++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+++++..
T Consensus 489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~~~~~~~~ 548 (564)
T PRK08155 489 QRVFAATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEAINRPGPALIHVRIDAEEKV 548 (564)
T ss_pred CCeeeccCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCccc
Confidence 222222 2469999999999999999999999999999999999999999999976543
No 21
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=1.7e-56 Score=533.11 Aligned_cols=398 Identities=16% Similarity=0.153 Sum_probs=312.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++||++.|++++||||||+||.|++..+.... ..+ ... . . +...++++.+++++
T Consensus 131 ~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~-~~~-~-~---~~~~~~~~~i~~~~ 189 (539)
T TIGR02418 131 ALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVK---------------AIP-ASY-A-P---KLGAAPDDAIDEVA 189 (539)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCccccc---------------ccC-ccc-C-C---CCCCCCHHHHHHHH
Confidence 3678899999999999999999999999643322110 000 000 0 0 11223556799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhc-cccccccchhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETE-QNILFLDHLDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~h-p~~~~~g~~g~~~~~~~~~~~ 158 (983)
++|++||||+|++|.|++ .++.+++++|||++|+||++|++ | ||+||++| |++ +|++|..+....+..+
T Consensus 190 ~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~-g------kg~i~~~~~~~~--~G~~G~~~~~~~~~~~ 260 (539)
T TIGR02418 190 EAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQ-G------AGAVSRELEDHF--FGRVGLFRNQPGDRLL 260 (539)
T ss_pred HHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccc-c------CcCCCCCCChhh--cccCcCCCcHHHHHHH
Confidence 999999999999999987 45678999999999999999986 7 89999997 664 7888877766677788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC----ChhHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR----SSKWCSF 234 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~----~~~w~~~ 234 (983)
++||+||++|+++.+..+..|... .+.++||||.|+..++++++.++.|.+|++.+|++|.+.+.... ...|.+.
T Consensus 261 ~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 339 (539)
T TIGR02418 261 KQADLVITIGYDPIEYEPRNWNSE-NDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYELPPDALAILED 339 (539)
T ss_pred HhCCEEEEecCcccccCccccCcC-CCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhccccCccchHHHHHH
Confidence 999999999999876655444321 13579999999999999999999999999999999998765321 2234443
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
++..+....+. .. .....++++.+++++|++.++++++++.|+|+ +..|..+++.. ..|++|+
T Consensus 340 ~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~---------- 402 (539)
T TIGR02418 340 LKQQREALDRV-PA-TLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGS----HYIWMARYFRS-YRARHLL---------- 402 (539)
T ss_pred HHHHHHHhhhc-cc-cCCCCCcCHHHHHHHHHhhCCCCCEEEECCcH----HHHHHHHhccc-CCCCcee----------
Confidence 33322221110 00 11234699999999999999999999999998 67777666653 4555544
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.
T Consensus 403 -~~~~~g~mG~--~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpi~ivV~NN~~y~~~~~~~~---- 473 (539)
T TIGR02418 403 -ISNGMQTLGV--ALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVR--LKLNIVHIIWNDNGYNMVEFQEE---- 473 (539)
T ss_pred -cCCCcccccc--HHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHH----
Confidence 3578899999 999999999999 9999999999999999999999999 99999999999999999865311
Q ss_pred CccccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 394 EPRILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 394 ~~~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
..+++..++. +++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++.+.
T Consensus 474 --~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~~ 536 (539)
T TIGR02418 474 --MKYQRSSGVDFGPIDFVKYAESFGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIPVDYSDNPK 536 (539)
T ss_pred --HhcCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccccc
Confidence 1122223322 4799999999999999999999999999999999999999999999887654
No 22
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1e-56 Score=540.46 Aligned_cols=405 Identities=17% Similarity=0.208 Sum_probs=311.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++|+|||||+||.|++....... |... .+.... . +...++++.+++++
T Consensus 164 ~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-----------~~~~-~~~~~~---~---~~~~p~~~~i~~~~ 225 (612)
T PRK07789 164 DIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFS-----------WPPR-MDLPGY---R---PVTKPHGKQIREAA 225 (612)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccc-----------cCcc-ccccCC---C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 0000 000000 0 11234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.+++++|||++|+||++|++ + ||+||++||++ +|.+|..++..++..++
T Consensus 226 ~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~-~------kg~~p~~hpl~--~G~~G~~~~~~~~~~l~ 296 (612)
T PRK07789 226 KLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLM-A------RGAFPDSHPQH--LGMPGMHGTVAAVAALQ 296 (612)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCcccCcHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777766777889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~ 232 (983)
+|||||++|+++++..+..+....+..++||||.|+..++++++.++.|++|++.+|++|++.+... ....|.
T Consensus 297 ~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~ 376 (612)
T PRK07789 297 RSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWW 376 (612)
T ss_pred hCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 9999999999997655433322223346999999999999999999999999999999999876431 123455
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...+........ ...+.++++..+++.|++.++++++++.|.|+ +..|..+++.+ ..|++|+
T Consensus 377 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~p~~~~-------- 441 (612)
T PRK07789 377 AYLDGWRETYPLGYD--EPSDGSLAPQYVIERLGEIAGPDAIYVAGVGQ----HQMWAAQFIDY-EKPRTWL-------- 441 (612)
T ss_pred HHHHHHHHhCccccc--cccCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE--------
Confidence 444333221111100 11235699999999999999999999999998 66677776664 5555544
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+...
T Consensus 442 ---~~~~~G~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~i~~~q~~~ 514 (612)
T PRK07789 442 ---NSGGLGTMGY--AVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAI--EGIPIKVALINNGNLGMVRQWQTLF 514 (612)
T ss_pred ---cCCCcccccc--hhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHH--cCCCeEEEEEECCchHHHHHHHHHh
Confidence 3578899999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
.. .......+.+ .+.+||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++.+
T Consensus 515 ~~-~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~ 580 (612)
T PRK07789 515 YE-ERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAINDRPVVIDFVVGKDAM 580 (612)
T ss_pred hC-CCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCccc
Confidence 00 0000001111 134899999999999999999999999999999984 899999999997553
No 23
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2e-56 Score=533.94 Aligned_cols=403 Identities=15% Similarity=0.107 Sum_probs=315.6
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|++++||||||+||.|++..+.... ........ ....++++.+++++
T Consensus 137 ~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~-----------------~~~~~~~~----~~~~~~~~~i~~~~ 195 (552)
T PRK08617 137 NLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSK-----------------AIAPLSKP----KLGPASPEDINYLA 195 (552)
T ss_pred HHHHHHHHHHHHHccCCCCcEEEeChhhhhhcccccc-----------------ccccccCC----CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999654332110 00000000 01123566799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||+. ++|.+|..+...++..++
T Consensus 196 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-g------kg~~~~~hp~~-~~G~~g~~~~~~~~~~~~ 267 (552)
T PRK08617 196 ELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ-A------AGVISRELEDH-FFGRVGLFRNQPGDELLK 267 (552)
T ss_pred HHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccc-c------CccCCCCCchh-hccCCcCCCcHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999842 378888777666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~~~~ 235 (983)
+|||||++|+++.+..+..|.. ....++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.+
T Consensus 268 ~aDlvl~lG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 346 (552)
T PRK08617 268 KADLVITIGYDPIEYEPRNWNS-EGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEEL 346 (552)
T ss_pred hCCEEEEecCcccccccccccc-CCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHH
Confidence 9999999999986555433321 12357999999999999999999999999999999998876432 123455555
Q ss_pred HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCccee
Q 041113 236 RALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIR 315 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 315 (983)
+...+..... .. .....++++..+++.|++.++++.+++.|+|+ +..|..+++.. .+|++|+
T Consensus 347 ~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~p~~~~----------- 408 (552)
T PRK08617 347 RAQLEELAER-PA-RLEEGAVHPLRIIRALQDIVTDDTTVTVDVGS----HYIWMARYFRS-YEPRHLL----------- 408 (552)
T ss_pred HHHHHHhhhh-hc-ccCCCCcCHHHHHHHHHHhcCCCcEEEeCCcH----HHHHHHHhccc-cCCCeEE-----------
Confidence 4433321111 10 11235699999999999999999999999998 66666665543 4454443
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+.
T Consensus 409 ~~~~~g~mG~--~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~~vV~NN~~~~~~~~~~~----- 479 (552)
T PRK08617 409 FSNGMQTLGV--ALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVR--LKLNIVHIIWNDGHYNMVEFQEE----- 479 (552)
T ss_pred ecCccccccc--cccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHH--hCCCeEEEEEECCccchHHHHHH-----
Confidence 3567899999 999999999999 9999999999999999999999999 99999999999999999865321
Q ss_pred ccccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHH
Q 041113 395 PRILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSM 461 (983)
Q Consensus 395 ~~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~ 461 (983)
..+.+.+++. +++||.++|++||+++++|++++||+++|+++++.++|+||||.+++++.+..++.
T Consensus 480 -~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~liev~~~~~~~~~~~~~ 546 (552)
T PRK08617 480 -MKYGRSSGVDFGPVDFVKYAESFGAKGLRVTSPDELEPVLREALATDGPVVIDIPVDYSDNIKLMEQ 546 (552)
T ss_pred -hhcCCcccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCcEEEEEEecccccchhhhh
Confidence 1223333333 47999999999999999999999999999999999999999999999887776654
No 24
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=2.9e-56 Score=532.90 Aligned_cols=416 Identities=13% Similarity=0.132 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|.++ +|||||+||.|++....... . ..+.... .. +.+.++++.++++++
T Consensus 139 ~~~~l~~A~~~A~~~-~GPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~---~~--~~~~~~~~~i~~~~~ 198 (576)
T PRK08611 139 LPEIVNQAIRTAYEK-KGVAVLTIPDDLPAQKIKDT-T-------------NKTVDTF---RP--TVPSPKPKDIKKAAK 198 (576)
T ss_pred HHHHHHHHHHHHhhC-CCCEEEEeChhhhhcccccc-c-------------ccccccC---CC--CCCCCCHHHHHHHHH
Confidence 678999999999996 59999999999654332100 0 0000000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|++ .+.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+...++..+++|
T Consensus 199 ~L~~AkrPvil~G~g~~-~a~~~l~~lae~~~~PV~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~a~~~l~~a 268 (576)
T PRK08611 199 LINKAKKPVILAGLGAK-HAKEELLAFAEKAKIPIIHTLP-A------KGIIPDDHPYS--LGNLGKIGTKPAYEAMQEA 268 (576)
T ss_pred HHHcCCCcEEEECcCcc-hHHHHHHHHHHHhCCCEEEccc-c------ccccCCCCccc--cccCCCCCcHHHHHHHHhC
Confidence 99999999999999987 4567999999999999999997 6 89999999996 6888877766676778999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
|+||+||+++.... |. ....++||||.|+.+++++++.++.|.+|++.+|++|.+.+.......|.+.+......
T Consensus 269 Dlvl~iG~~~~~~~---~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 343 (576)
T PRK08611 269 DLLIMVGTNYPYVD---YL--PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAK 343 (576)
T ss_pred CEEEEeCCCCCccc---cC--CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 99999999974211 21 12357999999999999999999999999999999999877544445677665544433
Q ss_pred HHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 242 VASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
+....... ...+.++++..+++.|++.+|++++++.|.|+ +..|..+++.+ ..|++|+ .+.++
T Consensus 344 ~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~ 407 (576)
T PRK08611 344 WWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGT----VTVWSARYLNL-GTNQKFI-----------ISSWL 407 (576)
T ss_pred HHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcChH----HHHHHHhcCCc-CCCCeEE-----------eCCCc
Confidence 33222211 12235699999999999999999999999998 66677666664 4444443 35678
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+... ..
T Consensus 408 g~mG~--glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r--~~l~~iivV~NN~~~g~i~~~q~~~------~~ 477 (576)
T PRK08611 408 GTMGC--GLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVK--YKLPIVVVVLNNQQLAFIKYEQQAA------GE 477 (576)
T ss_pred hhhhh--hHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHHh------cC
Confidence 99999 999999999999 9999999999999999999999999 9999999999999999987532111 11
Q ss_pred ccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHHHHHHHHhhhh
Q 041113 400 QYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQSADHTLNVLS 478 (983)
Q Consensus 400 ~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (983)
..+++ ..++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++.+.+............+...+++.+.
T Consensus 478 ~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (576)
T PRK08611 478 LEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAFEEALAQDKPVIIDVYVDPNAAPLPGKIVNDEALGYSKWAIKSLF 557 (576)
T ss_pred CcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCcccCCCCcccccchhhhhHHHHHHHH
Confidence 11222 34699999999999999999999999999999999999999999999876442222222333344445555544
No 25
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.1e-56 Score=536.03 Aligned_cols=402 Identities=17% Similarity=0.200 Sum_probs=312.6
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|+++++|||||+||.|.+....... . +. ..+... .... ....++++.+++++
T Consensus 138 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~---------~~--~~~~~~--~~~~--~~~~~~~~~~~~~~ 201 (572)
T PRK06456 138 EIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEI-K---------WP--EKPLVK--GYRD--FPTRIDRLALKKAA 201 (572)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEecChhHhhcccccc-c---------cc--cccccc--CCCC--CCCCCCHHHHHHHH
Confidence 3678899999999999999999999998532221100 0 00 000000 0000 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++++|+|++|+||++|++ | ||+||++||++ +|.+|..++..+...+.
T Consensus 202 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~i~~~hp~~--~G~~g~~~~~~~~~~~~ 272 (572)
T PRK06456 202 EILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFP-G------KTAIPHDHPLY--FGPMGYYGRAEASMAAL 272 (572)
T ss_pred HHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCc-c------CcCCCCCCccc--cccCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999995 78888777666667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWCSF 234 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~~~ 234 (983)
+||+||++|+++++..+..|..... ..++||||+|+..++++++.++.+.+|++.+|++|.+.+... ....|.+.
T Consensus 273 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 352 (572)
T PRK06456 273 ESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKR 352 (572)
T ss_pred hCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHH
Confidence 9999999999997766544433222 346999999999999999999999999999999998866431 22457665
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
++..++....... ...+.++++..+++.|++.++++++|+.|+|+ +.+|...++.+ .+|++|+
T Consensus 353 ~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~p~~~~---------- 415 (572)
T PRK06456 353 VKEYKEYYSQFYY--TEENGKLKPWKIMKTIRQALPRDAIVTTGVGQ----HQMWAEVFWEV-LEPRTFL---------- 415 (572)
T ss_pred HHHHHHhchhhcc--cccCCCcCHHHHHHHHHHhCCCCEEEEECCcH----HHHHHHHhcCc-CCCCcEE----------
Confidence 5444332211110 11234699999999999999999999999999 66666655553 4554444
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+..
T Consensus 416 -~~~~~g~mG~--glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~l~i~ivV~NN~~yg~i~~~q~~--- 487 (572)
T PRK06456 416 -TSSGMGTMGF--GLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVD--EHIPVISVIFDNRTLGLVRQVQDL--- 487 (572)
T ss_pred -cCCCcccccc--hhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHH--hCCCeEEEEEECCchHHHHHHHHH---
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999999764211
Q ss_pred Cccccc-cccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 394 EPRILD-QYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 394 ~~~~~~-~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.+. +...+. +++||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 488 ---~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~ 549 (572)
T PRK06456 488 ---FFGKRIVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAIKEDIPAVIRVPVDKEEL 549 (572)
T ss_pred ---hhCCCcccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 111 111221 35899999999999999999999999999999999999999999997653
No 26
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=3.5e-56 Score=534.45 Aligned_cols=403 Identities=13% Similarity=0.080 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|++|++.|++++ |||||+||.|.+....... .. ............ .+...++++.++++++
T Consensus 139 ~~~~l~~A~~~A~~~~-gPV~i~iP~Dv~~~~~~~~--~~----------~~~~~~~~~~~~--~~~~~~~~~~i~~a~~ 203 (597)
T PRK08273 139 LRHLVDRAVRTALAER-TVTAVILPNDVQELEYEPP--PH----------AHGTVHSGVGYT--RPRVVPYDEDLRRAAE 203 (597)
T ss_pred HHHHHHHHHHHHhhCC-CCEEEEeCcchhhCcccCc--cc----------cccccccccCCC--CCCCCCCHHHHHHHHH
Confidence 6889999999999975 9999999999643221100 00 000000000000 0122356778999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|++ ++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++..+++.+++|
T Consensus 204 ~L~~AkrPvi~~G~g~~-~a~~~l~~lae~~~~PV~tt~~-g------kg~~~e~hp~~--~G~~G~~g~~~a~~~~~~a 273 (597)
T PRK08273 204 VLNAGRKVAILVGAGAL-GATDEVIAVAERLGAGVAKALL-G------KAALPDDLPWV--TGSIGLLGTKPSYELMREC 273 (597)
T ss_pred HHhcCCCEEEEECcchH-hHHHHHHHHHHHhCCceeeccc-C------cccCCCCCccc--eecCCCCccHHHHHHHHhC
Confidence 99999999999999986 5678999999999999999997 7 89999999995 7888888877787888999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
||||+||+++... .+.......++||||+|+..++++++.++.|.+|++.+|++|++.+.......|.+.+...+..
T Consensus 274 Dlvl~lG~~~~~~---~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 350 (597)
T PRK08273 274 DTLLMVGSSFPYS---EFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVAR 350 (597)
T ss_pred CEEEEeCCCCCHH---hcCCCCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHH
Confidence 9999999998421 1211122347999999999999999999999999999999999877544445677666555554
Q ss_pred HHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 242 VASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
+....... ...+.++++.++++.|++.+|++++++.|+|+ +..|..+++++ +.+++|+ .++++
T Consensus 351 ~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~s~~~ 414 (597)
T PRK08273 351 WWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSGS----CANWYARDLRM-RRGMMAS-----------LSGTL 414 (597)
T ss_pred hHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhCCC-CCCCeEE-----------ecCcc
Confidence 43322211 12245799999999999999999999999998 66677776664 4444433 46889
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhcc-----CCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMK-----RKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~-----~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
|+||| |+|+||||++|+ +++||+|+|||||+|+ +|||+|++| | ++|+++||+||++|++++..+.....
T Consensus 415 g~mG~--glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r--~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~ 490 (597)
T PRK08273 415 ATMGP--AVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAK--YWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEG 490 (597)
T ss_pred ccccc--hHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHH--HhhcccCCCEEEEEEeCCcchHHHHHHHHhcC
Confidence 99999 999999999999 9999999999999999 699999999 8 89999999999999998653210000
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
...+. .....+++||+++|++||+++.+|++.+||+++|+++++.++|+||||.+++++
T Consensus 491 -~~~~~-~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 491 -DPKFE-ASQDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEALAADRPVVLEVKTDPNV 549 (597)
T ss_pred -CCccc-ccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 00010 111225799999999999999999999999999999999999999999999876
No 27
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.7e-56 Score=533.17 Aligned_cols=398 Identities=15% Similarity=0.147 Sum_probs=310.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++|+|||||+||.|........ .+...... +...++++.++++++
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~-----------------~~~~~~~~-----~~~~~~~~~i~~~~~ 191 (547)
T PRK08322 134 IPEVVREAFRLAEEERPGAVHLELPEDIAAEETDG-----------------KPLPRSYS-----RRPYASPKAIERAAE 191 (547)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcChhhhhCcccc-----------------ccccccCC-----CCCCCCHHHHHHHHH
Confidence 67899999999999999999999999953322100 01010000 112345678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|+|+. .++.+++.+|||++++||++|++ | ||+||++||++ +|.+|..+...++..+++
T Consensus 192 ~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 262 (547)
T PRK08322 192 AIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQM-G------KGVIPETHPLS--LGTAGLSQGDYVHCAIEH 262 (547)
T ss_pred HHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccc-c------CCcCCCCCchh--ccCCCCCCCHHHHHHHHh
Confidence 99999999999999986 45678999999999999999997 6 89999999996 677876666666778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHH-HHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCS-FLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~-~~~~~~ 239 (983)
||+||++|+++.+..+..|.. ....++||||.|+..+++++..++.+++|++.++++|.+.+... ..|.. .+...+
T Consensus 263 aDlil~lG~~l~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~--~~~~~~~~~~~~ 339 (547)
T PRK08322 263 ADLIINVGHDVIEKPPFFMNP-NGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLADQ--PHWDFPRFLKIR 339 (547)
T ss_pred CCEEEEECCCCccccccccCC-CCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcccc--ccccHHHHHHHH
Confidence 999999999998766544431 12346999999999999999999999999999999998876432 12221 122222
Q ss_pred HHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
+.......... ....++++.++++.|++.++++++++.|+|+ +.+|..++++. .+|++|+ .+.
T Consensus 340 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~ 403 (547)
T PRK08322 340 EAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA----YKIWFARNYRA-YEPNTCL-----------LDN 403 (547)
T ss_pred HHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH----HHHHHHHhccc-CCCCCEE-----------cCC
Confidence 21111111111 1224689999999999999999999999999 56666665553 4455444 357
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|+ +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. .
T Consensus 404 ~~g~mG~--~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~iiV~NN~~~g~~~~~~~~------~ 473 (547)
T PRK08322 404 ALATMGA--GLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVR--LGLPLVVLILNDNAYGMIRWKQEN------M 473 (547)
T ss_pred Ccccccc--hhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHH--hCCCeEEEEEeCCCcchHHHHHHh------h
Confidence 8899999 999999999999 9999999999999999999999999 999999999999999999753211 1
Q ss_pred cccccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHH
Q 041113 398 LDQYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 398 ~~~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~ 459 (983)
+.+.++ +.+++||+++|++||+++.+|++.+||+++|+++++.++|+||||.++++.+.+.+
T Consensus 474 ~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~v~~~~~~~~~ 536 (547)
T PRK08322 474 GFEDFGLDFGNPDFVKYAESYGAKGYRVESADDLLPTLEEALAQPGVHVIDCPVDYSENDRVL 536 (547)
T ss_pred cCCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCccCcchh
Confidence 112222 23579999999999999999999999999999999999999999999987765533
No 28
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.1e-56 Score=534.85 Aligned_cols=398 Identities=18% Similarity=0.226 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++++||++.|+++|||||||+||.|++..+.... +.. ..+... ..+...+++..++++++
T Consensus 149 ~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-----------~~~-~~~~~~------~~~~~~~~~~~i~~~~~ 210 (571)
T PRK07710 149 LPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFC-----------YDV-QMDLPG------YQPNYEPNLLQIRKLVQ 210 (571)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcChhHhhcccccc-----------ccc-cccccC------CCCCCCCCHHHHHHHHH
Confidence 678999999999999999999999999653322100 000 000000 00122346677999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..+....+..+++
T Consensus 211 ~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~i~~~hpl~--~G~~G~~~~~~~~~~l~~ 281 (571)
T PRK07710 211 AVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLL-G------LGGFPADHPLF--LGMAGMHGTYTANMALYE 281 (571)
T ss_pred HHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCc-c------CccCCCCCccc--cCCCCCCCCHHHHHHHHh
Confidence 99999999999999976 45678999999999999999996 6 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~~~ 239 (983)
||+||++|+++.+..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|++.+... ....|.+.++..+
T Consensus 282 aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 361 (571)
T PRK07710 282 CDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWK 361 (571)
T ss_pred CCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHH
Confidence 999999999997655433322233346899999999999999999999999999999998865432 2356766555443
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.+..... .....++++..+++.|++.+|++++++.|.|+ +..|..+++.+ ++|++|+ .+++
T Consensus 362 ~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 422 (571)
T PRK07710 362 EKYPLSY---KRNSESIKPQKAIEMLYEITKGEAIVTTDVGQ----HQMWAAQYYPF-KTPDKWV-----------TSGG 422 (571)
T ss_pred HhChhhh---cCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhccc-CCCCeEE-----------cCCC
Confidence 3221111 11134699999999999999999999999998 66777766664 5555554 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+. ..+
T Consensus 423 ~g~mG~--glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r--~~lpi~ivV~NN~~~~~i~~~~~------~~~ 492 (571)
T PRK07710 423 LGTMGF--GLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKE--LSLPVKVVILNNEALGMVRQWQE------EFY 492 (571)
T ss_pred cccccc--hHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHH--hCCCeEEEEEECchHHHHHHHHH------HHh
Confidence 899999 999999999999 8999999999999999999999999 99999999999999999975421 111
Q ss_pred cc-cccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 399 DQ-YFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 399 ~~-~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.. +... ..++||+++|++||+++++|++.+||+++|+++++.++|+||||.++++++
T Consensus 493 ~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~lieV~vd~~~~ 552 (571)
T PRK07710 493 NQRYSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKEQLQHAIELQEPVVIDCRVLQSEK 552 (571)
T ss_pred CCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecCccc
Confidence 11 1111 246999999999999999999999999999999999999999999997664
No 29
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2.7e-56 Score=534.11 Aligned_cols=402 Identities=20% Similarity=0.233 Sum_probs=309.7
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++|||+.|+++|||||||+||.|.+..+.... . ..+...........+...++++.+++++
T Consensus 146 ~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~v~~a~ 211 (585)
T CHL00099 146 DISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYY-P-------------PEPGNTIIKILGCRPIYKPTIKRIEQAA 211 (585)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEecChhhhhhhcccc-c-------------ccccccccccccCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643221100 0 0000000000000012235677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..+...++..+.
T Consensus 212 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~-~------kg~~~~~hpl~--~G~~G~~~~~~~~~~l~ 282 (585)
T CHL00099 212 KLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLM-G------KGIFDEDHPLC--LGMLGMHGTAYANFAVS 282 (585)
T ss_pred HHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccc-c------CcCCCCCCCcc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 56778999999999999999997 6 89999999996 68887666666667789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-------ChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-------SSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-------~~~w~ 232 (983)
+|||||++|+++++..+..+....+..++||||.|+..++++++.++.+.+|++.+|++|.+.+.... ...|.
T Consensus 283 ~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 362 (585)
T CHL00099 283 ECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWR 362 (585)
T ss_pred hCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHH
Confidence 99999999999977655433322233479999999999999999999999999999999988764321 13455
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 233 SFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
+.+...++...... ...+.++++.++++.|++.+| +++++.|.|+ +..|..+++.. .|++|+
T Consensus 363 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~~~-d~iv~~d~G~----~~~~~~~~~~~--~~~~~~-------- 424 (585)
T CHL00099 363 ERINRWRKEYPLLI---PKPSTSLSPQEVINEISQLAP-DAYFTTDVGQ----HQMWAAQFLKC--KPRKWL-------- 424 (585)
T ss_pred HHHHHHHHhChhhc---cccCCCcCHHHHHHHHHhhCC-CeEEEECCcH----HHHHHHHhccC--CCCcEE--------
Confidence 44433222111100 112457999999999999999 8999999998 66777666552 344443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
.++++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 425 ---~~~~~g~mG~--glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~l~~~~vV~NN~~y~~i~~~q~~~ 497 (585)
T CHL00099 425 ---SSAGLGTMGY--GLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQ--YNLPIKIIIINNKWQGMVRQWQQAF 497 (585)
T ss_pred ---cCccccchhh--hHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHH--hCCCeEEEEEECCcchHHHHHHHHh
Confidence 3588999999 999999999999 9999999999999999999999999 9999999999999999987642110
Q ss_pred CCCccccccccc---cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFY---TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~---~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...++.. ..+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.
T Consensus 498 -----~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~v~~~~~ 559 (585)
T CHL00099 498 -----YGERYSHSNMEEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEALDYDGPVLIDCQVIEDEN 559 (585)
T ss_pred -----cCCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcc
Confidence 0111111 1236899999999999999999999999999999999999999999997664
No 30
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.7e-55 Score=494.98 Aligned_cols=356 Identities=17% Similarity=0.198 Sum_probs=284.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKI 573 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~ 573 (983)
||++|+++.+.+|++.|+.++.+.. ..++.++|||+||+|++||||+... .++.. .+..+++.++|+++
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~----~~~~~~~Vrv~td~G~~G~Ge~~~~---~~~~~----~~~~~~~~llg~~~ 69 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHE----PFFTRNIVELTDDNGNTGVGESPGG---AEALE----ALLEAARSLVGGDV 69 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCC----CcceEEEEEEEECCCCeeccccCCC---HHHHH----HHHHHhHHHhCCCc
Confidence 6999999999999999999866542 2379999999999999999997542 12222 23467888888876
Q ss_pred c-ccccccccCchhhhhhhcCCC-----CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE
Q 041113 574 S-YFLPLLKGSFSSWIWSTLGIP-----ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC 647 (983)
Q Consensus 574 ~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~ 647 (983)
. ....++..+.........+.. ......+|++|||||||||+||.+|+|||+||||.. +++|++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~---------r~~v~~y 140 (395)
T cd03323 70 FGAYLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQ---------RDSVPFL 140 (395)
T ss_pred chhhHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCc---------cCeEEEE
Confidence 3 333333322111000000000 002357899999999999999999999999999975 4789999
Q ss_pred Eeec--------------------CCCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEE
Q 041113 648 ALID--------------------SNKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706 (983)
Q Consensus 648 ~~~~--------------------~~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~v 706 (983)
+++. ...+++++.++++++++ +||++||+|+|. .++++|+++|+++|+++ +++.||+
T Consensus 141 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~-~~~~~di~~v~avRea~-~~~~l~v 218 (395)
T cd03323 141 AYLFYKGDRHKTDLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGV-LPGEEEIEAVKALAEAF-PGARLRL 218 (395)
T ss_pred EEeeeccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCC-CCHHHHHHHHHHHHHhC-CCCcEEE
Confidence 8742 13478999999999986 699999999987 47899999999999999 5899999
Q ss_pred EcCCCCCHHHHHHHHhhcccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcC
Q 041113 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKP 785 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~ 785 (983)
|||++|++++|+++++.|++ ++.|||||+++++++++|++++++||++||++++..+ +..+++.+ +|++|+|+
T Consensus 219 DaN~~w~~~~A~~~~~~l~~-~l~~iEeP~~d~~~~~~L~~~~~~PIa~dEs~~~~~~-----~~~~i~~~avdil~~d~ 292 (395)
T cd03323 219 DPNGAWSLETAIRLAKELEG-VLAYLEDPCGGREGMAEFRRATGLPLATNMIVTDFRQ-----LGHAIQLNAVDIPLADH 292 (395)
T ss_pred eCCCCcCHHHHHHHHHhcCc-CCCEEECCCCCHHHHHHHHHhcCCCEEcCCcccCHHH-----HHHHHHcCCCcEEeecc
Confidence 99999999999999999999 9999999999999999999999999999999998653 66666554 79999999
Q ss_pred CCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hh-cccccC
Q 041113 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQ-WLKEDV 863 (983)
Q Consensus 786 ~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~d~ 863 (983)
+++||+|+++|++++|+++|++++.|++.+++|+.++++|++++++|+.. ++++ .. +..+++
T Consensus 293 ~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~----------------~~d~~~~~~~~~~~ 356 (395)
T cd03323 293 HFWGGMRGSVRVAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLIT----------------ACDTHWIWQDGQVI 356 (395)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCccc----------------ccccchhhhccccc
Confidence 99999999999999999999999999888999999999999999886411 1111 11 223345
Q ss_pred CCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 864 TTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 864 ~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
..+|+.+++ +|++||||+++| ++.+++++.
T Consensus 357 ~~~~~~~~~G~~~vp~~PGLGv~~d--~~~l~~~~~ 390 (395)
T cd03323 357 TGEPLRIKDGKVAVPDKPGLGVELD--RDKLAKAHE 390 (395)
T ss_pred cCCCceeeCCEEECCCCCcCCccCC--HHHHHHHHH
Confidence 556887773 999999999999 888888764
No 31
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=8.3e-56 Score=528.86 Aligned_cols=401 Identities=11% Similarity=0.105 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++|++.|++ ++|||||+||.|.+....... ..+......... ....++++.++++++
T Consensus 134 ~~~~i~~A~~~A~~-~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~--~~~~~~~~~v~~~~~ 195 (575)
T TIGR02720 134 LPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIPDN---------------DYYASSVSYQTP--LLPAPDVEAVTRAVQ 195 (575)
T ss_pred HHHHHHHHHHHHhh-CCCCEEEEECcchhhcccccc---------------ccccccccccCC--CCCCCCHHHHHHHHH
Confidence 67889999999999 679999999999643222100 000000000000 123456778999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|++ ++.+++.+|||++++||++|++ | ||+||++||++ +|.+|..++..+...+++|
T Consensus 196 ~L~~AkrPvil~G~g~~-~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hpl~--~G~~g~~~~~~~~~~l~~a 265 (575)
T TIGR02720 196 TLKAAERPVIYYGIGAR-KAGEELEALSEKLKIPLISTGL-A------KGIIEDRYPAY--LGSAYRVAQKPANEALFQA 265 (575)
T ss_pred HHHcCCCcEEEECcchh-hHHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--ccCCcCCCcHHHHHHHHhC
Confidence 99999999999999987 4568999999999999999997 6 89999999996 7888877777777788999
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCce-EEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCT-YILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~-~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||++|+++....+ ...+...+ +||||.|+..++++++.++.|.+|++.+|++|++.+.......|...+.....
T Consensus 266 Dlvl~vG~~~~~~~~---~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 342 (575)
T TIGR02720 266 DLVLFVGNNYPFAEV---SKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVEPRESTPWWQANVANVK 342 (575)
T ss_pred CEEEEeCCCCCcccc---ccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHH
Confidence 999999999853322 11233334 59999999999999999999999999999999988755444456544433222
Q ss_pred HHHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 241 MVASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.+....... ...+.++++..+++.|++.+|++++++.|+|+ +..|..+++++ ..|++|+ .+++
T Consensus 343 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 406 (575)
T TIGR02720 343 NWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGD----ININSNRHLKM-TPKNKWI-----------TSNL 406 (575)
T ss_pred HHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcH----HHHHHHHhCCc-CCCCeEE-----------cCCC
Confidence 222222111 11245799999999999999999999999998 66777666664 5555554 2467
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. ..
T Consensus 407 ~gsmG~--glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr--~~lpi~~VV~NN~~yg~i~~~~~~------~~ 476 (575)
T TIGR02720 407 FATMGV--GVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQ--YHLPVINIVFSNCTYGFIKDEQED------TN 476 (575)
T ss_pred cchhhc--hHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHH--hCCCeEEEEEeCCccHHHHHHHHH------hC
Confidence 899999 999999999999 9999999999999999999999999 999999999999999998653110 01
Q ss_pred cccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcccchHHH
Q 041113 399 DQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ--HLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 399 ~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~~~~~~~ 459 (983)
.++..+ ..++||+++|++||+++++|++.+||+++|++++ +.++|+||||.+++++..+..
T Consensus 477 ~~~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al~~a~~~~~~~p~liev~i~~~~~~~~~ 540 (575)
T TIGR02720 477 QPLIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVFEQAKAIKQGKPVLIDAKITGDRPLPVE 540 (575)
T ss_pred CCcccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEEEEeCCCCCCCCc
Confidence 112222 2469999999999999999999999999999999 789999999999998755433
No 32
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=8.4e-56 Score=530.46 Aligned_cols=399 Identities=16% Similarity=0.139 Sum_probs=307.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|++|++.|.+++ |||||+||.|.+..+.... .+... .. ....++++.+++++
T Consensus 134 ~~~~~i~~A~~~A~~~~-GPV~l~iP~Dv~~~~~~~~----------------~~~~~--~~----~~~~~~~~~i~~~~ 190 (579)
T TIGR03457 134 RMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVE----------------IPRPV--RL----DRGAGGATSLAQAA 190 (579)
T ss_pred HHHHHHHHHHHHHhcCC-CCEEEEeCcchhhhhcccc----------------cCccc--cc----CCCCCCHHHHHHHH
Confidence 36889999999999985 9999999999643322100 00000 00 01234667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 191 ~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-g------kg~~p~~hp~~--~G~~g~~g~~~~~~~l~ 261 (579)
T TIGR03457 191 RLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYL-H------NDSFPASHPLW--VGPLGYQGSKAAMKLIS 261 (579)
T ss_pred HHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEccc-c------cccCCCCCchh--ccCCcCcchHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777777777889
Q ss_pred CCCEEEEeCCccccHHHHH-HH-HhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC----CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQ-MI-EECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH----RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~-~~-~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~----~~~~w~ 232 (983)
+|||||++|+++++..+.. |. ..+. ..++||||.|+..+++++..++.|.+|++.+|++|.+.+... ....|.
T Consensus 262 ~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 341 (579)
T TIGR03457 262 DADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERK 341 (579)
T ss_pred hCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhh
Confidence 9999999999997544321 11 1222 357999999999999999999999999999999999877431 111222
Q ss_pred HHHHHHHHHHHHHHHh----------------hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccc
Q 041113 233 SFLRALDMMVASEISF----------------QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
+.+...+..+.....+ ....+.++++.+++++|++.++++++++.|+|+ +..|..+++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~----~~~~~~~~~~~ 417 (579)
T TIGR03457 342 AKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGN----INSVANSYLRF 417 (579)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHHhCCCCeEEEECCch----hHHHHHHhcCc
Confidence 1111111111111100 011234699999999999999999999999998 66677666664
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
+.|++|+ .++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||
T Consensus 418 -~~p~~~~-----------~~~~~g~mG~--~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Tavr--~~lpvi~vV 481 (579)
T TIGR03457 418 -EKPRKFL-----------APMSFGNCGY--AFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEIMTAVR--HDIPVTAVV 481 (579)
T ss_pred -CCCCeEE-----------cCCccccccc--hHHHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEE
Confidence 5665554 3578899999 999999999999 9999999999999999999999999 999999999
Q ss_pred EeCCCCccccCCCCCCCCCccccc-ccccc-C-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEE
Q 041113 376 INNHGGAIFSLLPIADRTEPRILD-QYFYT-T-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVE 449 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~-~~~~~-~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~ 449 (983)
+||++|++++..+. ..++ ++.++ . ..+||.++|++||+++.+|++++||.++|+++++ .++|+||||.
T Consensus 482 ~NN~~yg~i~~~~~------~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~~~~p~lieV~ 555 (579)
T TIGR03457 482 FRNRQWGAEKKNQV------DFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIEIV 555 (579)
T ss_pred EECcchHHHHHHHH------HhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 99999999875321 1121 12222 1 2379999999999999999999999999999986 5899999999
Q ss_pred cCcccchH
Q 041113 450 SCIDANAT 457 (983)
Q Consensus 450 ~~~~~~~~ 457 (983)
+++++.++
T Consensus 556 v~~~~~~~ 563 (579)
T TIGR03457 556 CTRELGDP 563 (579)
T ss_pred eCCCcCCc
Confidence 99877433
No 33
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-55 Score=524.73 Aligned_cols=391 Identities=15% Similarity=0.127 Sum_probs=305.7
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|+|||||+||.|++..+.... . .+.... ... ....++++.+++++
T Consensus 137 ~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~----------~-----~~~~~~-~~~---~~~~~~~~~i~~~~ 197 (542)
T PRK05858 137 NAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMADDD----------G-----RPGALT-ELP---AGPTPDPDALARAA 197 (542)
T ss_pred HHHHHHHHHHHHHcCCCCCeEEEEcChhhhhcccccc----------c-----cccccc-cCC---CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999654332110 0 000000 000 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|. .....++
T Consensus 198 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~-~------kg~~~~~hpl~--~~~-------~~~~~l~ 261 (542)
T PRK05858 198 GLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM-G------RGVVPADHPLA--FSR-------ARGKALG 261 (542)
T ss_pred HHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCC-c------CCCCCCCCchh--hhH-------HHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 332 2345678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-CChhHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRA 237 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-~~~~w~~~~~~ 237 (983)
+||+||+||+++.+..+.++ +. ..++||||.|+..++++++.++.+.+|+++++++|.+.+... ....|.+.++.
T Consensus 262 ~aD~vl~vG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~ 338 (542)
T PRK05858 262 EADVVLVVGVPMDFRLGFGV---FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRT 338 (542)
T ss_pred hCCEEEEECCCCcccccccc---cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 99999999999865433222 22 357999999999999999999999999999999999877542 33457766655
Q ss_pred HHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 238 LDMMVASEISFQI-CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
.+..+........ ....++++.++++.|++.+|++.+++.|.|+ +..|..+++.+ ..|++|+ .
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~ 402 (542)
T PRK05858 339 AETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGD----FVSYAGRYIDP-YRPGCWL-----------D 402 (542)
T ss_pred HHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHHHccc-cCCCCEE-----------e
Confidence 4433322211111 2345799999999999999999999999998 66666666654 5555544 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|. +|+||+++|||||+|++|||+|++| |++|+++||+||++|++++.....
T Consensus 403 ~~~~gsmG~--~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~--~~lpi~ivV~NN~~y~~~~~~~~~----- 473 (542)
T PRK05858 403 PGPFGCLGT--GPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVR--HNLPVVSVIGNNGIWGLEKHPMEA----- 473 (542)
T ss_pred CCCcccccc--chhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHH--cCCCEEEEEEeCCchhhHHHHHHH-----
Confidence 467899999 999999999999 9999999999999999999999999 999999999999999998642111
Q ss_pred cccc-cccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILD-QYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~-~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
.+. +... ..+++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++.
T Consensus 474 -~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~~~~~~~ 534 (542)
T PRK05858 474 -LYGYDVAADLRPGTRYDEVVRALGGHGELVTVPAELGPALERAFASGVPYLVNVLTDPSVA 534 (542)
T ss_pred -hcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEECCCcC
Confidence 111 1111 2257999999999999999999999999999999999999999999998753
No 34
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-55 Score=526.34 Aligned_cols=393 Identities=15% Similarity=0.134 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.++||++.|.+ ++|||||+||.|......... + ....... . . +...++++.++++++
T Consensus 137 ~~~~i~~A~~~A~~-~~gPV~l~iP~Dv~~~~~~~~-~-------------~~~~~~~-~-~---~~~~~~~~~i~~~~~ 196 (574)
T PRK09124 137 LPRVLAIAMRKAIL-NRGVAVVVLPGDVALKPAPER-A-------------TPHWYHA-P-Q---PVVTPAEEELRKLAA 196 (574)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEeChhhhhCccccc-c-------------ccccccC-C-C---CCCCCCHHHHHHHHH
Confidence 67889999999998 559999999999643332110 0 0000000 0 0 112245678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|+. ++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+....+..+++|
T Consensus 197 ~L~~AkrPvii~G~g~~-~a~~~l~~lae~l~~PV~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~~~~a 266 (574)
T PRK09124 197 LLNGSSNITLLCGSGCA-GAHDELVALAETLKAPIVHALR-G------KEHVEYDNPYD--VGMTGLIGFSSGYHAMMNC 266 (574)
T ss_pred HHHcCCCCEEEECcChH-hHHHHHHHHHHHhCCceEEccc-c------cccCCCCCccc--ccCCccCCCHHHHHHHHhC
Confidence 99999999999999884 4568999999999999999997 6 89999999996 6788877766666778999
Q ss_pred CEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||+||+++... .| +. ..++||||.|+.+++++++.++.|.+|++.++++|.+.+.......|.+.+.....
T Consensus 267 Dlvl~lG~~~~~~---~~---~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 340 (574)
T PRK09124 267 DTLLMLGTDFPYR---QF---YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYR 340 (574)
T ss_pred CEEEEECCCCCcc---cc---cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 9999999998521 12 22 34799999999999999999999999999999999887644333457665543333
Q ss_pred HHHHHHHh---hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 241 MVASEISF---QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
.+...... ......++++..+++.|++.++++++++.|+|+ +..|..+++.. ..|++|+ .+
T Consensus 341 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~ 404 (574)
T PRK09124 341 KARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGT----PTVWAARYLKM-NGKRRLL-----------GS 404 (574)
T ss_pred HHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcCCH----HHHHHHHhccc-CCCCeEE-----------ec
Confidence 22221111 111235699999999999999999999999999 55566555553 4554444 35
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
+++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++||+++..... .
T Consensus 405 ~~~G~mG~--~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~i~~~~~~-----~ 475 (574)
T PRK09124 405 FNHGSMAN--AMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQ--LKLPVKIVVFNNSVLGFVAMEMKA-----G 475 (574)
T ss_pred CCcccccc--hHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHH--hCCCeEEEEEeCCccccHHHHHHh-----c
Confidence 78999999 999999999999 9999999999999999999999999 999999999999999999643211 0
Q ss_pred cccccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 397 ILDQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 397 ~~~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
.+. .+++ .+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.+
T Consensus 476 ~~~-~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 476 GYL-TDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAFAHDGPALVDVVTAKQELA 535 (574)
T ss_pred CCc-cccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCcccC
Confidence 111 1222 3578999999999999999999999999999999999999999999987643
No 35
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=6.8e-55 Score=487.76 Aligned_cols=339 Identities=15% Similarity=0.148 Sum_probs=271.1
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g~~ 572 (983)
||++|+++.+++|++.|+..+...+ ..++.++|||+| +|++||||+.. .++. ...+ +.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~----~~~~~v~V~v~~-~G~~G~Ge~~~----~~~~---~~~i~~~~~p~liG~d 68 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAW----DATTLVLVEVRA-GGRTGLGYTYA----DAAA---AALVDGLLAPVVEGRD 68 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccce----eeeeEEEEEEEc-CCcEEEeCCCC----hHHH---HHHHHHHHHHHhcCCC
Confidence 7999999999999999985544321 247789999997 79999998642 2222 1222 45889999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+... .......+...+|++|||+|||||+||.+|+|||+||||.+ ++|++|++...
T Consensus 69 ~~~~~~l~~~~~~~----~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~----------~~v~~y~s~~~ 134 (352)
T cd03328 69 ALDPPAAWEAMQRA----VRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAH----------DSVPVYGSGGF 134 (352)
T ss_pred cccHHHHHHHHHHH----HHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCC----------CCeEEEEecCC
Confidence 98877665433211 11111223445799999999999999999999999999953 68999987532
Q ss_pred -CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 -NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 -~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..+++++.+++++++++||++||+|+|. ++++|+++|+++|+++|+++.||+|+|++||+++|+++++.|+++++.|
T Consensus 135 ~~~~~e~~~~~a~~~~~~Gf~~~Kikvg~--~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~ 212 (352)
T cd03328 135 TSYDDDRLREQLSGWVAQGIPRVKMKIGR--DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTW 212 (352)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEeecCC--CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcch
Confidence 3478899999999999999999999985 6899999999999999999999999999999999999999999999999
Q ss_pred eecCCC--ChHHHHHHHhh--cCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCC
Q 041113 732 IEEPVQ--NEEDIIKYCEE--SGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGK 806 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~--~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi 806 (983)
||||++ |++++++|+++ +++||++||++++..+ +..+++.+ +|++|+|++++|||+++++++++|+++|+
T Consensus 213 ~EeP~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~-----~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi 287 (352)
T cd03328 213 FEEPVSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAY-----FRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHV 287 (352)
T ss_pred hhCCCChhhHHHHHHHHhhCCCCCCEEecccccCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCC
Confidence 999998 78899999999 8899999999999764 66666655 69999999999999999999999999999
Q ss_pred cEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCC-CCeeeE
Q 041113 807 MAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSC-RGFVEA 881 (983)
Q Consensus 807 ~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~-~pGlGv 881 (983)
+++.|++ .++++|++++++|.. . . ++ +....++.++++.+|+.+++ +|+ +|||||
T Consensus 288 ~~~~h~~------~~a~~hl~aa~~n~~--~---~--e~-------~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv 347 (352)
T cd03328 288 DLSAHCA------PALHAHVACAVPRLR--H---L--EW-------FHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGL 347 (352)
T ss_pred eeccCch------HHHHHHHHHhCCCCc--c---c--ee-------cccchhhhHHhccCCCcccCCEEeCCCCCCccce
Confidence 9776542 468899999998641 1 0 00 00111233455566777763 777 799999
Q ss_pred Eecc
Q 041113 882 SVAK 885 (983)
Q Consensus 882 ~~d~ 885 (983)
++|+
T Consensus 348 ~~d~ 351 (352)
T cd03328 348 ELRA 351 (352)
T ss_pred ecCC
Confidence 9993
No 36
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-55 Score=520.71 Aligned_cols=392 Identities=16% Similarity=0.135 Sum_probs=307.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++++++|++.|++ +||||||+||.|.+....... ..+.. . ....+...++++.+++++
T Consensus 136 ~~~~~i~~A~~~A~~-~~GPV~l~lP~Dv~~~~~~~~---------------~~~~~-~---~~~~~~~~~~~~~i~~a~ 195 (578)
T PRK06546 136 QAPRVLHSAIQHAVA-GGGVSVVTLPGDIADEPAPEG---------------FAPSV-I---SPRRPTVVPDPAEVRALA 195 (578)
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEEcChhhhhcccccc---------------ccccc-c---ccCCCCCCCCHHHHHHHH
Confidence 367899999999997 679999999999543222100 00000 0 000012245677899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|++ ++.+++.+|||++|+||++|++ | ||+||++||++ +|+.|..++..++..+++
T Consensus 196 ~~L~~A~rPvii~G~g~~-~a~~~l~~lae~~g~Pv~~t~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 265 (578)
T PRK06546 196 DAINEAKKVTLFAGAGVR-GAHAEVLALAEKIKAPVGHSLR-G------KEWIQYDNPFD--VGMSGLLGYGAAHEAMHE 265 (578)
T ss_pred HHHHcCCCcEEEECcchH-HHHHHHHHHHHHhCcceEECcc-c------ccCCCCCCccc--cCCCCCCCCHHHHHHHHh
Confidence 999999999999999987 5678999999999999999997 6 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|||||+||+++... .| .++.++||||.|+..++++++.++.|.+|++.+|++|.+.+.......|.+.+.....
T Consensus 266 aDlvl~lG~~~~~~---~~---~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~ 339 (578)
T PRK06546 266 ADLLILLGTDFPYD---QF---LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHA 339 (578)
T ss_pred CCEEEEEcCCCChh---hc---CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHH
Confidence 99999999998521 12 2334799999999999999889999999999999999988764444567665543333
Q ss_pred HHHHHHH----hhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 241 MVASEIS----FQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 241 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
.+..... .......++++..+++.|++.++++++++.|.|+ +..|..+++.. .+|++|+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~~----------- 403 (578)
T PRK06546 340 RKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVDTGM----CNVWAARYITP-NGRRRVIG----------- 403 (578)
T ss_pred HHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEECCcH----HHHHHHHhcCC-CCCceEEc-----------
Confidence 2211111 1111235799999999999999999999999998 56666665543 44544442
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| |+|+|||+++|+ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++.....
T Consensus 404 s~~~gsmG~--~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~--~~lpv~~vV~NN~~~g~i~~~q~~----- 474 (578)
T PRK06546 404 SFRHGSMAN--ALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKL--YDLPVKVVVFNNSTLGMVKLEMLV----- 474 (578)
T ss_pred cCCcccccc--hhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHH--hCCCeEEEEEECCccccHHHHHHh-----
Confidence 467899999 999999999999 9999999999999999999999999 999999999999999998642110
Q ss_pred ccccccccc-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 396 RILDQYFYT-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 396 ~~~~~~~~~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
...+.+++ .+++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++..
T Consensus 475 -~~~~~~~~~~~~~df~~lA~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~ 533 (578)
T PRK06546 475 -DGLPDFGTDHPPVDYAAIAAALGIHAVRVEDPKDVRGALREAFAHPGPALVDVVTDPNA 533 (578)
T ss_pred -cCCCcccccCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCc
Confidence 01111222 35799999999999999999999999999999999999999999998765
No 37
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2e-55 Score=527.26 Aligned_cols=402 Identities=17% Similarity=0.210 Sum_probs=310.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|+++++|||||+||.|++..+.... ..+.........+.+...++++.+++++
T Consensus 133 ~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 197 (586)
T PRK06276 133 EIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLE---------------KYPIPAKIDLPGYKPTTFGHPLQIKKAA 197 (586)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEcChhHHhhhhccc---------------cccccccccccCCCCCCCCCHHHHHHHH
Confidence 3688999999999999999999999998543221100 0000000000000112234567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|.|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..+....+..++
T Consensus 198 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-~------kg~~p~~hp~~--~G~~G~~~~~~~~~~l~ 268 (586)
T PRK06276 198 ELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLM-G------KGAFPEDHPLA--LGMVGMHGTKAANYSVT 268 (586)
T ss_pred HHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCC-C------CccCCCCCccc--ccCCCCCCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 68887767666667889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+|||||++|+++++..+..+....+..++||||.|+..+++++..++.|.+|++.+|++|.+.+... ....|.+.+.
T Consensus 269 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 348 (586)
T PRK06276 269 ESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVK 348 (586)
T ss_pred cCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHH
Confidence 9999999999997665543432233457999999999999988899999999999999999876431 2345665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCC-----CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTS-----NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
..+....... ...+.++++..+++.|++.+++ +++|+.|+|+ +..|...++.+ ++|++|+
T Consensus 349 ~~~~~~~~~~---~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~----~~~~~~~~~~~-~~p~~~~------- 413 (586)
T PRK06276 349 KLKKESIPRM---DFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQ----NQMWMAHFFKT-SAPRSFI------- 413 (586)
T ss_pred HHHHhccccc---cCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-------
Confidence 3332211110 0123569999999999999999 9999999998 55665555553 5555544
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|++| |++|+++||+||++|++++..+..
T Consensus 414 ----~~~~~gsmG~--~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~~vV~NN~~~g~~~~~~~~ 485 (586)
T PRK06276 414 ----SSGGLGTMGF--GFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAE--YDIPVVICIFDNRTLGMVYQWQNL 485 (586)
T ss_pred ----cCCCcccccc--chhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHH
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999998643211
Q ss_pred CCCCccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
. ...++..+. +++||.++|++||+++.+|++++||+++|+++++.++|.||||.+++++
T Consensus 486 ~-----~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~ 546 (586)
T PRK06276 486 Y-----YGKRQSEVHLGETPDFVKLAESYGVKADRVEKPDEIKEALKEAIKSGEPYLLDIIIDPAE 546 (586)
T ss_pred H-----hCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEecccc
Confidence 0 011111221 4689999999999999999999999999999998999999999998755
No 38
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.1e-54 Score=488.32 Aligned_cols=347 Identities=18% Similarity=0.170 Sum_probs=278.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+++|++.|+.++.+.. ..++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~----~~~~~v~V~v~t~~G~~G~Ge~~~--~~~~~~~~~~~~~~~l~p~LiG~~ 74 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTV----ATAPLVLIDLATDEGVTGHSYLFT--YTPAALKSLKQLLDDMAALLVGEP 74 (355)
T ss_pred CeeEEEEEEEEEccCCCcccccccee----ccCcEEEEEEEECCCCeEEEeeec--CCCCcHHHHHHHHHHHHHHhCCCC
Confidence 69999999999999999999988754 237889999999999999999642 334444445555677999999987
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
.+ ...++.. ..... ... ...+....|++|||||||||+||.+|+|||+||||.+ ++|++|+++.
T Consensus 75 ~~-~~~~~~~-~~~~~-~~~--~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~----------~~v~~y~s~~- 138 (355)
T cd03321 75 LA-PAELERA-LAKRF-RLL--GYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNP----------RPVQAYDSHG- 138 (355)
T ss_pred CC-hHHHHHH-HHHHH-Hhh--cCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC----------CCeeEEEeCC-
Confidence 42 2222211 10100 011 1223456899999999999999999999999999975 5699998863
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+++++.+++++++++||++||+|+|. .++++|+++++++|+++|+++.|++|+|++|++++|+++++.|+++++.||
T Consensus 139 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg~-~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i 217 (355)
T cd03321 139 LDGAKLATERAVTAAEEGFHAVKTKIGY-PTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI 217 (355)
T ss_pred CChHHHHHHHHHHHHHhhhHHHhhhcCC-CChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEE
Confidence 4568899999999999999999999986 368899999999999999999999999999999999999999999999999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEE
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAV 809 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~ 809 (983)
|||++ +++++++|++++++||++||+++++.+ +..+++. .+|++|+|++++||++++++++++|+++|++++
T Consensus 218 EeP~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~-----~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 218 EEPTLQHDYEGHARIASALRTPVQMGENWLGPEE-----MFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred ECCCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHH-----HHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 99998 788999999999999999999998763 5666654 479999999999999999999999999999976
Q ss_pred eCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecc
Q 041113 810 VSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAK 885 (983)
Q Consensus 810 ~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~ 885 (983)
+|.+ + ..++|++++++++.. . . +..+..+++.+|+.+++ +|++||||+++|
T Consensus 293 -~h~~-~----~~~~h~~aa~~~~~~-----~------------e-~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d- 347 (355)
T cd03321 293 -SHLF-Q----EISAHLLAVTPTAHW-----L------------E-YVDWAGAILEPPLKFEDGNAVIPDEPGNGIIWR- 347 (355)
T ss_pred -ccch-H----HHHHHHHHhCCCcce-----e------------e-ccchHHHHhcCCcEEECCEEECCCCCcCCcccC-
Confidence 4432 2 247899998875310 0 0 00122345567788774 899999999999
Q ss_pred hhhhhhhc
Q 041113 886 ATHILQNL 893 (983)
Q Consensus 886 a~~~~~~~ 893 (983)
++.++++
T Consensus 348 -~~~l~~~ 354 (355)
T cd03321 348 -EKAVRKY 354 (355)
T ss_pred -HHHHHhh
Confidence 7777654
No 39
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.6e-54 Score=484.90 Aligned_cols=342 Identities=26% Similarity=0.320 Sum_probs=282.4
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHH-HHHhHhccCcc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLR-FLLHFMTGAKI 573 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~-~~~~~l~g~~~ 573 (983)
|+++.+++|++.|+.++.+++ ..++.++|||+|++|++||||+.+. + ++.++...+...+. .+.|.++|+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~----~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~ 76 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTL----NEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREF 76 (354)
T ss_pred CEEEEEEecccCceEccceEE----EeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 478899999999999998765 3489999999999999999999864 2 34566665555555 47899999988
Q ss_pred cccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC
Q 041113 574 SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN 653 (983)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~ 653 (983)
.+...++.. +.. . ...+++++||||||||++||.+|+|||+||||. ++++++|+++...
T Consensus 77 ~~~~~~~~~-----~~~-~-----~~~~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~----------~~~v~~~~s~~~~ 135 (354)
T cd03317 77 SHPEEVSER-----LAP-I-----KGNNMAKAGLEMAVWDLYAKAQGQSLAQYLGGT----------RDSIPVGVSIGIQ 135 (354)
T ss_pred CCHHHHHHH-----HHH-h-----cCChHHHHHHHHHHHHHHHHHcCCCHHHHhCCC----------CCeEEeeEEEeCC
Confidence 765444321 111 1 124579999999999999999999999999994 3689999887544
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE 733 (983)
.+++++.+++++++++||++||+|++ ++.|+++|++||+++| ++.|++|+|++||.++|. +++.|+++++.|||
T Consensus 136 ~~~~~~~~~~~~~~~~Gf~~~KiKv~----~~~d~~~l~~vr~~~g-~~~l~lDaN~~~~~~~a~-~~~~l~~~~i~~iE 209 (354)
T cd03317 136 DDVEQLLKQIERYLEEGYKRIKLKIK----PGWDVEPLKAVRERFP-DIPLMADANSAYTLADIP-LLKRLDEYGLLMIE 209 (354)
T ss_pred CcHHHHHHHHHHHHHcCCcEEEEecC----hHHHHHHHHHHHHHCC-CCeEEEECCCCCCHHHHH-HHHHhhcCCccEEE
Confidence 44588999999999999999999995 3689999999999998 999999999999999985 79999999999999
Q ss_pred cCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 734 EPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 734 eP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
||++ |++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|+++++
T Consensus 210 eP~~~~d~~~~~~l~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~ 284 (354)
T cd03317 210 QPLAADDLIDHAELQKLLKTPICLDESIQSAED-----ARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWC 284 (354)
T ss_pred CCCChhHHHHHHHHHhhcCCCEEeCCccCCHHH-----HHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEe
Confidence 9998 677899999999999999999999764 66666654 699999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEecch
Q 041113 811 SAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVAKA 886 (983)
Q Consensus 811 ~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a 886 (983)
|++++|+++.++++|+++ +++.. ++... .++..++.+|++.+|+.+++ +|++||||+++|
T Consensus 285 g~~~es~l~~~a~~hla~-~~~~~----------~~~~~---~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d-- 348 (354)
T cd03317 285 GGMLESGIGRAHNVALAS-LPNFT----------YPGDI---SASSRYFEEDIITPPFELENGIISVPTGPGIGVTVD-- 348 (354)
T ss_pred cCcccchHHHHHHHHHHh-CCCCC----------Ccccc---CcchhhhhhccccCCeEeeCCEEECCCCCcCceecC--
Confidence 999999999999999964 55321 00010 11234677788878888874 999999999999
Q ss_pred hhhhh
Q 041113 887 THILQ 891 (983)
Q Consensus 887 ~~~~~ 891 (983)
++.++
T Consensus 349 ~~~l~ 353 (354)
T cd03317 349 REALK 353 (354)
T ss_pred HHHhc
Confidence 66544
No 40
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1e-54 Score=518.85 Aligned_cols=400 Identities=16% Similarity=0.125 Sum_probs=302.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++|||||||+||.|.+..+..... ...+...... .. +...++++.+++++
T Consensus 137 ~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~~~~~~~~-------------~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 200 (554)
T TIGR03254 137 DIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEK-------------AKKTLVKVVD-PA--PKQLPSPDSVDRAV 200 (554)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHHHhhccccccc-------------cccccccccC-CC--CCCCCCHHHHHHHH
Confidence 36789999999999999999999999996433321100 0000000000 00 11234677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|.|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.. .+..++
T Consensus 201 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~p~~hp~~--~g~~-------~~~~~~ 264 (554)
T TIGR03254 201 ELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSM-A------KGLLPDTHPQS--AAAA-------RSFALA 264 (554)
T ss_pred HHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCC-c------ceeCCCCCchh--hhHH-------HHHHHh
Confidence 999999999999999987 45678999999999999999997 6 89999999996 4432 235678
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~ 235 (983)
+|||||++|+++++..+.++...+. ..++||||.|+..++.+++.++.|.+|++.+|++|.+.+... ....|.+.+
T Consensus 265 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~ 344 (554)
T TIGR03254 265 EADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAI 344 (554)
T ss_pred cCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 9999999999998766654433343 347999999999999999999999999999999999877431 245677655
Q ss_pred HHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcCC--CceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 236 RALDMMVASEISFQI-CADYSLTEPHVAHELSRALTS--NSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~--~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
...+..+........ ....++++..+++.|++.+++ +.+++.|.|+ +..|...++++ .+|++|+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~----~~~~~~~~~~~-~~p~~~~-------- 411 (554)
T TIGR03254 345 KTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGAN----TLDLARNVIDM-YKPRHRL-------- 411 (554)
T ss_pred HHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCch----HHHHHHHhccc-CCCCcEe--------
Confidence 544333221111111 123579999999999999975 6667777776 44555555543 4555444
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
.++++|+||| |+|+|||+++|.+++||+|+|||||||++|||+|++| |++|+++||+||++|..-.+. .
T Consensus 412 ---~~~~~gsmG~--~lpaaiGaala~~~~vv~i~GDGsf~m~~~EL~Ta~r--~~l~v~~vV~NN~~~~~~~~~--~-- 480 (554)
T TIGR03254 412 ---DVGTWGVMGI--GMGYAIAAAVETGKPVVALEGDSAFGFSGMEVETICR--YNLPVCVVIFNNGGIYRGDDV--N-- 480 (554)
T ss_pred ---eCCCCCcCCc--hHHHHHHHHhcCCCcEEEEEcCchhcccHHHHHHHHH--cCCCEEEEEEeChhhhhhhhh--h--
Confidence 3578899999 9999999999989999999999999999999999999 999999999999987211000 0
Q ss_pred CCccccccccc-c-CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHH
Q 041113 393 TEPRILDQYFY-T-THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH 459 (983)
Q Consensus 393 ~~~~~~~~~~~-~-~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~ 459 (983)
........ + .+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.++.-
T Consensus 481 ---~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~~~~~ 546 (554)
T TIGR03254 481 ---VVGADPAPTVLVHGARYDKMMKAFGGVGYNVTTPDELKAALNEALASGKPTLINAVIDPSAGTESG 546 (554)
T ss_pred ---hcCCCCCccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEECCCcCCccc
Confidence 00001111 1 1579999999999999999999999999999999899999999999988776653
No 41
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=2.8e-54 Score=489.28 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=272.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|||++|+++.+. + ..++|||+|++|++||||+.... .. ..+...++.+.|.|+|++
T Consensus 1 mkI~~i~~~~~~-----~---------------~~vlV~v~t~dG~~G~GE~~~~~-~~---~~~~~~~~~~~p~l~G~d 56 (382)
T PRK14017 1 MKITKLETFRVP-----P---------------RWLFLKIETDEGIVGWGEPVVEG-RA---RTVEAAVHELADYLIGKD 56 (382)
T ss_pred CeEEEEEEEEEC-----C---------------CEEEEEEEECCCCeEEeccccCC-ch---HHHHHHHHHHHHHhCCCC
Confidence 699999987651 1 13789999999999999986432 11 223344567899999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+.. ...........+|++|||||||||+||.+|+|||+||||+. +++|++|+++ +
T Consensus 57 ~~~~~~~~~~l~~-----~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~---------r~~i~~~~~~-~ 121 (382)
T PRK14017 57 PRRIEDHWQVMYR-----GGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLV---------RDRIRVYSWI-G 121 (382)
T ss_pred HHHHHHHHHHHHH-----hcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cceeeEeEeC-C
Confidence 9887665543211 00011122356799999999999999999999999999975 5789999876 3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCC-------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcc
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARR-------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~-------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 725 (983)
..+++++.+++++++++||++||+|+|.. .++++|+++|+++|+++|+++.|++|||++||.++|+++++.|+
T Consensus 122 ~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~ 201 (382)
T PRK14017 122 GDRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELE 201 (382)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999999631 13578999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHH
Q 041113 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQ 802 (983)
Q Consensus 726 ~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~ 802 (983)
++++.|||||++ +++++++|++++++||++|||+++..+ +..+++.+ +|++|+|++++||++++++++++|+
T Consensus 202 ~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~-----~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~ 276 (382)
T PRK14017 202 PYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWD-----FKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAE 276 (382)
T ss_pred ccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHH-----HHHHHHcCCCCeEecCccccCCHHHHHHHHHHHH
Confidence 999999999998 788999999999999999999999764 66666655 7999999999999999999999999
Q ss_pred HcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccch-----hcccccCCC-CCceee----c
Q 041113 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTY-----QWLKEDVTT-DPISIC----H 872 (983)
Q Consensus 803 ~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~d~~~-~p~~~~----~ 872 (983)
++|+++++|++.+ ++++++++|+++++++.. . .+ +++++. .++ +.+.. +|+.++ .
T Consensus 277 ~~gi~~~~h~~~~-~i~~aa~~hl~aa~~~~~--~---~e--------~~l~~~~~~~~~~~-~~~~~~~~~~~~dG~~~ 341 (382)
T PRK14017 277 AYDVALAPHCPLG-PIALAACLQVDAVSPNAF--I---QE--------QSLGIHYNQGADLL-DYVKNKEVFAYEDGFVA 341 (382)
T ss_pred HcCCeEeecCCCC-HHHHHHHHHHHHhCccce--e---ee--------ecccccccchhhHH-HhcccCCCCcccCCeEE
Confidence 9999988877665 899999999999988531 0 01 111111 111 11111 466666 3
Q ss_pred cCCCCeeeEEecchhhhhhhccc
Q 041113 873 NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 873 ~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
+|++|||||++| ++.++++..
T Consensus 342 vp~~PGLGv~~d--~~~l~~~~~ 362 (382)
T PRK14017 342 IPTGPGLGIEID--EAKVRERAK 362 (382)
T ss_pred CCCCCcCCcCCC--HHHHHHhhh
Confidence 999999999999 888888864
No 42
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.3e-55 Score=524.14 Aligned_cols=400 Identities=18% Similarity=0.211 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.++||++.|.++++|||||+||.|.+......... .+... ......+...++++.++++++
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~i~~~~~ 201 (574)
T PRK06882 138 IPSTIKKAFYIASTGRPGPVVIDIPKDMVNPANKFTYE--------------YPEEV--SLRSYNPTVQGHKGQIKKALK 201 (574)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecCHHHhhhhcccccc--------------cCccc--ccccCCCCCCCCHHHHHHHHH
Confidence 67899999999999999999999999953211100000 00000 000000112245678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+||+|+|++ .++.+++.+|+|++|+||++|++ | ||+||++||++ +|.+|..++..++..+++
T Consensus 202 ~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hp~~--~G~~G~~~~~~~~~~l~~ 272 (574)
T PRK06882 202 ALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLM-G------LGAYPSTDKQF--LGMLGMHGTYEANNAMHE 272 (574)
T ss_pred HHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCc-c------CcCCCCCChhh--cCCCcccccHHHHHHHHh
Confidence 99999999999999987 45678999999999999999996 7 89999999996 688887777777778899
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------CChhHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------RSSKWCS 233 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~~~~w~~ 233 (983)
|||||+||+++++..+..|....+..++||||.|+..++++++.++.|.+|++.+|++|.+.+... ....|.+
T Consensus 273 aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 352 (574)
T PRK06882 273 SDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQ 352 (574)
T ss_pred CCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 999999999998776654433333347999999999999999999999999999999998866321 2245555
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcc
Q 041113 234 FLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQW 313 (983)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 313 (983)
.+...+........ ....++++..+++.|++.++++.+++.|+|+ +..|..+++.+ ..|++|+
T Consensus 353 ~~~~~~~~~~~~~~---~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~p~~~~--------- 415 (574)
T PRK06882 353 QINEWKAKKCLEFD---RTSDVIKPQQVVEAIYRLTNGDAYVASDVGQ----HQMFAALHYPF-DKPRRWI--------- 415 (574)
T ss_pred HHHHHHHhChhhhc---cCCCCcCHHHHHHHHHhhcCCCeEEEecCch----hHHHHHHhccc-cCCCcEE---------
Confidence 44333221111100 1134689999999999999999999999998 66777666664 5555544
Q ss_pred eeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 314 IRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 314 ~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
.++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+..
T Consensus 416 --~~~~~g~mG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~lpv~~vV~NN~~~~~i~~~q~~-- 487 (574)
T PRK06882 416 --NSGGAGTMGF--GLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQ--YDIPVVIVSLNNRFLGMVKQWQDL-- 487 (574)
T ss_pred --eCCCcccccc--hhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEECchhHHHHHHHHH--
Confidence 3578899999 999999999999 8999999999999999999999999 999999999999999998754211
Q ss_pred CCccccc-ccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccc
Q 041113 393 TEPRILD-QYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDAN 455 (983)
Q Consensus 393 ~~~~~~~-~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~ 455 (983)
.+. +.... ..++||.++|++||+++++|++.+||+++|+++++. ++|+||||.++++++
T Consensus 488 ----~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~liev~i~~~~~ 550 (574)
T PRK06882 488 ----IYSGRHSQVYMNSLPDFAKLAEAYGHVGIQIDTPDELEEKLTQAFSIKDKLVFVDVNVDETEH 550 (574)
T ss_pred ----hcCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhcCCCcEEEEEEecCccc
Confidence 011 11111 135899999999999999999999999999999874 899999999997654
No 43
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=7.6e-55 Score=521.03 Aligned_cols=400 Identities=20% Similarity=0.238 Sum_probs=311.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|+++++|||||+||.|.+..+... +.......+...+...+++..+++++
T Consensus 134 ~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~i~~~~ 195 (558)
T TIGR00118 134 DIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEY------------------PYPEKVNLPGYRPTVKGHPLQIKKAA 195 (558)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEcChhhhhhhccc------------------cccccccccCCCCCCCCCHHHHHHHH
Confidence 367899999999999999999999999964322110 00000000000011234556799999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+||+|+|++ .++.++|.+|+|++|+||++|++ | ||+||++||++ +|.+|..+...++..+.
T Consensus 196 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~-~------kg~~~e~hp~~--~G~~g~~~~~~~~~~l~ 266 (558)
T TIGR00118 196 ELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLM-G------LGSFPEDHPLS--LGMLGMHGTKTANLAVH 266 (558)
T ss_pred HHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------CCCCCCCCccc--cCCCCCCCCHHHHHHHH
Confidence 999999999999999987 45678999999999999999997 6 89999999996 78888777666677889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC---CChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH---RSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~---~~~~w~~~~~ 236 (983)
+||+||+||+++++..+..|...++..++||||.|+..++.++..++.+.+|++.+|++|.+.+... ....|.+.++
T Consensus 267 ~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~ 346 (558)
T TIGR00118 267 ECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQIN 346 (558)
T ss_pred hCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHH
Confidence 9999999999997765544433333457999999999999888899999999999999999876431 2345665544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+...... ....+.++++..++++|++.+|++++++.|+|+ +..|..+++.+ ++|++|+ .
T Consensus 347 ~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~----~~~~~~~~~~~-~~p~~~~-----------~ 407 (558)
T TIGR00118 347 KWKKEYPLK---MDYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQ----HQMWAAQFYPF-RKPRRFI-----------T 407 (558)
T ss_pred HHHHhChhh---ccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-----------e
Confidence 333221110 011245799999999999999999999999998 55666666553 4555444 3
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| ++|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+....
T Consensus 408 ~~~~g~mG~--~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~--~~l~~~~vv~NN~~~~~~~~~q~~~~--- 480 (558)
T TIGR00118 408 SGGLGTMGF--GLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQ--YDIPVKILILNNRYLGMVRQWQELFY--- 480 (558)
T ss_pred CCccccccc--hhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEeCCchHHHHHHHHHhc---
Confidence 578899999 999999999999 8999999999999999999999999 99999999999999999864321000
Q ss_pred ccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..++..+ .+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 481 --~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~~~~~~ 540 (558)
T TIGR00118 481 --EERYSHTHMGSLPDFVKLAEAYGIKGIRIEKPEELDEKLKEALSSNEPVLLDVVVDKPEN 540 (558)
T ss_pred --CCceeeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEeCCccc
Confidence 0111111 236899999999999999999999999999999999999999999997553
No 44
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1.3e-53 Score=485.81 Aligned_cols=346 Identities=16% Similarity=0.151 Sum_probs=275.0
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHH-HHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL-RFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l-~~~~~~l~g~ 571 (983)
|||++|+++.+ .| .++.++|||+|++|++||||+.+.. ++. .+...+ +.++|.|+|+
T Consensus 1 mkI~~v~~~~~-----~~-------------~~~~vlVri~td~G~~G~GE~~~~~---~~~-~~~~~~~~~l~p~l~G~ 58 (404)
T PRK15072 1 MKIVDAEVIVT-----CP-------------GRNFVTLKITTDDGVTGLGDATLNG---REL-AVASYLQDHVCPLLIGR 58 (404)
T ss_pred CeeEEEEEEEE-----CC-------------CCcEEEEEEEeCCCCeEEEecccCC---chH-HHHHHHHHHHHHHcCCC
Confidence 69999998643 11 1356899999999999999986432 111 223333 4689999999
Q ss_pred cccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 572 KISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
++.+++.++..+ +.............|++|||||||||+||.+|+|||+||||.. +++|++|++.
T Consensus 59 d~~~~e~~~~~l-----~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~---------r~~v~~y~~~- 123 (404)
T PRK15072 59 DAHRIEDIWQYL-----YRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGAS---------REGVMVYGHA- 123 (404)
T ss_pred ChhHHHHHHHHH-----HHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cCceEEEEeC-
Confidence 998876555322 1111011222456799999999999999999999999999975 5789999764
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC---------------------------------ChHHHHHHHHHHHHHc
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA---------------------------------DPIKDAEVIQEVRKKV 698 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~---------------------------------~~~~d~~~v~~vr~~~ 698 (983)
...+++++.+++++++++||++||+|+|.+. .++.|+++|++||+++
T Consensus 124 ~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~ 203 (404)
T PRK15072 124 NGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF 203 (404)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh
Confidence 3457888999999999999999999997310 0134578999999999
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 699 g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
|+++.|++|+|++||+++|+++++.|+++++.|||||++ +.+++++|++++++||++||++++..+ +..+++.
T Consensus 204 G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~-----~~~li~~ 278 (404)
T PRK15072 204 GFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWD-----CKQLIEE 278 (404)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHH-----HHHHHHc
Confidence 999999999999999999999999999999999999998 788999999999999999999998764 6666665
Q ss_pred C-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCcc
Q 041113 777 G-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLG 854 (983)
Q Consensus 777 ~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~ 854 (983)
+ +|++|+|++++|||++++|++++|+++|++++.|++. +|+++.++++|++++++|+.+ +.+.
T Consensus 279 ~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~---------------~e~~ 343 (404)
T PRK15072 279 QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGI---------------QEYM 343 (404)
T ss_pred CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccce---------------eeec
Confidence 5 6999999999999999999999999999998876554 699999999999999886421 0011
Q ss_pred chhcccccCCCCCceeec----cCCCCeeeEEecchhhhhhhccccc
Q 041113 855 TYQWLKEDVTTDPISICH----NSCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 855 ~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
.+..+..|++.+|+.+++ +|++||||+++| ++.++++...+
T Consensus 344 ~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~d--~~~l~~~~~~~ 388 (404)
T PRK15072 344 GHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDFD--EKLAAKYPYEP 388 (404)
T ss_pred ccchhhHhhcCCCCeEECCEEECCCCCCCCeeEC--HHHHhhCCCcc
Confidence 111233466667888773 999999999999 88888886543
No 45
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=2.7e-53 Score=509.20 Aligned_cols=409 Identities=30% Similarity=0.460 Sum_probs=307.6
Q ss_pred HHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccc-cccccccchhhHHHHHHHHhcC
Q 041113 8 SAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQH-SHACKSYTYCQMAEVLELVQGV 86 (983)
Q Consensus 8 ~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~L~~A 86 (983)
+|+..|.++++|||||+||.|++..+........ .+ ..+... .... ..+...+++..+++++++|++
T Consensus 154 ~a~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~------~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~- 221 (568)
T PRK07449 154 DAALAAQTLQAGPVHINCPFREPLYPDDDDDTGS------PW---LAPLGD--WWQDDWLRQTVQPEVTSQRDWDIWRQ- 221 (568)
T ss_pred HHHHHhcCCCCCCEEEeCCCCCCCCCCCcccccc------cc---cccccc--cccccccccccCccccchhhhhhhcc-
Confidence 4444588999999999999997544321000000 00 000000 0000 000122445678999999998
Q ss_pred CceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh-ccCccccccCCCCEEE
Q 041113 87 NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA-LLSESVKDWIQFDVII 165 (983)
Q Consensus 87 krPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~-~~~~~~~~~~~aDlvl 165 (983)
|||+||+|+|++.. .+++.+|||++|+||++|++ + |+.+|++||++ +|.+|.. +.......+++||+||
T Consensus 222 krPvii~G~g~~~~-~~~l~~lae~~g~PV~tt~~-~------~~~~~~~hp~~--~G~~g~~~~~~~~~~~l~~aD~vl 291 (568)
T PRK07449 222 KRGVVIAGRLSAEE-GQAIAALAQLLGWPLLADPL-S------PRNYAPLHPQP--IPCYDLWLRNPKAAEELLQPDIVI 291 (568)
T ss_pred CCeEEEECCCChHH-HHHHHHHHHHCCCeEEEecC-C------CCCCCCCCccc--cchHHHHhcCchhhhhcCCCCEEE
Confidence 99999999998743 38999999999999999997 5 79999999995 7888866 4445556788999999
Q ss_pred EeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 041113 166 QIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASE 245 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~ 245 (983)
++|+++++..+..|.... ..++||||.|+..+++++..++.+.+|++.+|++ ... .....|...++..++.+...
T Consensus 292 ~vG~~l~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~-~~~---~~~~~~~~~~~~~~~~~~~~ 366 (568)
T PRK07449 292 QFGSPPTSKRLLQWLADC-EPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA-HPA---EKRKPWLQEWQALNEKAREA 366 (568)
T ss_pred EeCCCCCchhHHHHHhcC-CCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh-ccc---ccchHHHHHHHHHHHHHHHH
Confidence 999999777666664332 3379999999999999999999999999999999 322 12346776665544443322
Q ss_pred HHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCc
Q 041113 246 ISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGI 325 (983)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~ 325 (983)
..... .+.++++..+++.|++.+|++++|++|+|++++... .++.. ..++++ + ...++|+|||
T Consensus 367 ~~~~~-~~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~----~~~~~-~~~~~~----------~-~~~g~~~~G~ 429 (568)
T PRK07449 367 VREQL-AEDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVD----AFGQL-PDGYPV----------Y-SNRGASGIDG 429 (568)
T ss_pred HHHHh-ccCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHH----HccCc-CCCceE----------E-ecCCccchhh
Confidence 22111 245799999999999999999999999998544332 22221 222222 2 2456788999
Q ss_pred cchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 326 DGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 326 ~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
++|+|||+++|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|++++++..... .....+++.+.
T Consensus 430 --~lpaaiGaala~~~~vv~i~GDGsf~~~~~eL~Ta~r--~~l~i~ivVlNN~g~~~~~~~~~~~~--~~~~~~~~~~~ 503 (568)
T PRK07449 430 --LLSTAAGVARASAKPTVALIGDLSFLHDLNGLLLLKQ--VPAPLTIVVVNNNGGGIFSLLPQPEE--EPVFERFFGTP 503 (568)
T ss_pred --HHHHHHHHHhcCCCCEEEEechHHhhcCcHHHHhhcc--cCCCeEEEEEECCCCccccCCCCCCC--cchhhHhhcCC
Confidence 9999999999988999999999999999999999998 99999999999999998876532211 11223445555
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHH
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFA 466 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~ 466 (983)
.++||+++|++||+++++|++++||+++|+++++.++|+||||.+++++.++.++++...+
T Consensus 504 ~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~id~~~~~~~~~~~~~~~ 564 (568)
T PRK07449 504 HGVDFAHAAAMYGLEYHRPETWAELEEALADALPTPGLTVIEVKTNRSQGAQLLQALLAQV 564 (568)
T ss_pred CCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHhcCCCCEEEEEeCChhhhHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999998887644
No 46
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1.4e-54 Score=520.26 Aligned_cols=396 Identities=18% Similarity=0.165 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++++||++.|+++ +|||||+||.|.+....... .+... .. ....+++..++++++
T Consensus 139 ~~~~i~rA~~~A~~~-~GPV~i~iP~Dv~~~~~~~~----------------~~~~~--~~----~~~~~~~~~i~~a~~ 195 (588)
T PRK07525 139 MAEVLNRVFDKAKRE-SGPAQINIPRDYFYGVIDVE----------------IPQPV--RL----ERGAGGEQSLAEAAE 195 (588)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEcChhHhhhhcccc----------------cCccc--cC----CCCCCCHHHHHHHHH
Confidence 688999999999997 69999999999643221100 00000 00 012346678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|+|++ .++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++...++.+++
T Consensus 196 ~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~-g------kg~~p~~hpl~--~G~~g~~g~~~~~~~~~~ 266 (588)
T PRK07525 196 LLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYL-H------NDAFPGSHPLW--VGPLGYNGSKAAMELIAK 266 (588)
T ss_pred HHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEccc-c------cccCCCCCccc--cccCcccCcHHHHHHHHh
Confidence 99999999999999986 45678999999999999999997 6 89999999996 788876666666677899
Q ss_pred CCEEEEeCCccccHHHHHHH--Hhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-----CChhHH
Q 041113 161 FDVIIQIGSRITSKRISQMI--EEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWC 232 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~--~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~ 232 (983)
||+||+||+++++..+..+. ..+ +..++||||.|+..++++++.++.|++|++.+|++|.+.+... ....|.
T Consensus 267 aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~ 346 (588)
T PRK07525 267 ADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERK 346 (588)
T ss_pred CCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhh
Confidence 99999999999765432111 122 2357999999999999999999999999999999998877431 122333
Q ss_pred HHHHHHHHHHHHHHH---h-hh------------cccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccc
Q 041113 233 SFLRALDMMVASEIS---F-QI------------CADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~---~-~~------------~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
+.+......+..... . .. ...+++++.++++.|++.+|++++++.|.|+ +..|..+++++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~----~~~~~~~~~~~ 422 (588)
T PRK07525 347 ALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGN----NCSIANSYLRF 422 (588)
T ss_pred hhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHHHHhCCCCcEEEECCcc----cHHHHHHhccc
Confidence 222211111111110 0 00 1135799999999999999999999999999 66677666664
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
.+|++|+ .++++|+||| |+|+|||+++|. +++||+++|||||+|++|||+|+++ |++|+++||
T Consensus 423 -~~p~~~~-----------~~~~~g~mG~--glp~aiGa~la~p~r~vv~i~GDG~f~~~~~el~Ta~~--~~lpv~ivV 486 (588)
T PRK07525 423 -EKGRKYL-----------APGSFGNCGY--AFPAIIGAKIACPDRPVVGFAGDGAWGISMNEVMTAVR--HNWPVTAVV 486 (588)
T ss_pred -CCCCeEE-----------cccccccccc--HHHHHHHHHHhCCCCcEEEEEcCchHhccHHHHHHHHH--hCCCeEEEE
Confidence 5666555 3578899999 999999999999 9999999999999999999999999 999999999
Q ss_pred EeCCCCccccCCCCCCCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc---CCCEEEEEEc
Q 041113 376 INNHGGAIFSLLPIADRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL---GTDRVIEVES 450 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~---~~p~lIeV~~ 450 (983)
+||++|++++..+.. .+..++.++ .+++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+
T Consensus 487 ~NN~~y~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIev~~ 561 (588)
T PRK07525 487 FRNYQWGAEKKNQVD-----FYNNRFVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAIDAQNEGKTTVIEIMC 561 (588)
T ss_pred EeCchhHHHHHHHHH-----HhCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence 999999998753211 011112222 235899999999999999999999999999999864 5999999999
Q ss_pred Cccc
Q 041113 451 CIDA 454 (983)
Q Consensus 451 ~~~~ 454 (983)
++..
T Consensus 562 ~~~~ 565 (588)
T PRK07525 562 NQEL 565 (588)
T ss_pred cccc
Confidence 8654
No 47
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=7.8e-55 Score=518.87 Aligned_cols=405 Identities=14% Similarity=0.098 Sum_probs=303.4
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.+++|++.|+++| |||||+||.|.+...... ... ...+.. . .... +...+++..+++++
T Consensus 156 ~~~~~l~~A~~~A~~~~-gPV~l~iP~Dv~~~~~~~-~~~-----------~~~~~~-~-~~~~--~~~~~~~~~~~~a~ 218 (578)
T PLN02573 156 DAHELIDTAISTALKES-KPVYISVSCNLAAIPHPT-FSR-----------EPVPFF-L-TPRL--SNKMSLEAAVEAAA 218 (578)
T ss_pred HHHHHHHHHHHHHHhcC-CCEEEEeehhhhcCcccc-ccC-----------CCCCcc-c-ccCC--CChHHHHHHHHHHH
Confidence 36789999999999975 999999999964322110 000 000000 0 0000 01124567899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccch-hhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHL-DHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~-g~~~~~~~~~~~ 158 (983)
++|++||||+||+|+|++ .++.+++++|||++|+||+||++ | ||+||++||++ +|.+ |..+++..+..+
T Consensus 219 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~-g------kg~~pe~hpl~--~G~~~G~~~~~~~~~~~ 289 (578)
T PLN02573 219 EFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPS-A------KGLVPEHHPHF--IGTYWGAVSTPFCAEIV 289 (578)
T ss_pred HHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcc-c------CCCCCCcCCCc--eEEeeCCCCCHHHHHHH
Confidence 999999999999999986 55678999999999999999997 7 89999999996 7887 666777777788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++||+||++|+++++..+.+|....++.++||||.|+..+++++ ++.+. |++.++++|++.+.... ..|.. +...
T Consensus 290 ~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~--~~~~~-~~~~~l~~L~~~l~~~~-~~~~~-~~~~ 364 (578)
T PLN02573 290 ESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGP--AFGCV-LMKDFLEALAKRVKKNT-TAYEN-YKRI 364 (578)
T ss_pred HhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcc--eECCc-CHHHHHHHHHHHhhccc-ccccc-cccc
Confidence 99999999999998766654433333457999999999998764 34444 89999999998774321 12321 1100
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
.. ............++++.++++.|++.++++++++.|+|+. +|...++++ .++..| ..++
T Consensus 365 ~~--~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~-----~~~~~~~~~-~~~~~~-----------~~~~ 425 (578)
T PLN02573 365 FV--PEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDS-----WFNCQKLKL-PEGCGY-----------EFQM 425 (578)
T ss_pred cc--CcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccc-----hhhHHhccC-CCCCeE-----------Eeec
Confidence 00 0000000112346999999999999999999999999983 222222221 222222 2467
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| |+|+|||+++|. +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++....
T Consensus 426 ~~gsmG~--glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r--~~lpvv~vV~NN~~yg~~~~~~~-------- 493 (578)
T PLN02573 426 QYGSIGW--SVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIR--CGQKSIIFLINNGGYTIEVEIHD-------- 493 (578)
T ss_pred chhhhhh--hhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHH--cCCCCEEEEEeCCceeEEEeecc--------
Confidence 8999999 999999999999 9999999999999999999999999 99999999999999999875311
Q ss_pred cccccccCCCCCHHHHHHHcC-----CceeeeCCHHHHHHHHHhhhc--cCCCEEEEEEcCcccchHHHHHHHHHHHHH
Q 041113 398 LDQYFYTTHNISIQNLCLAHG-----LNHVQVKTKVELEEALSMSQH--LGTDRVIEVESCIDANATFHSMLRKFARQS 469 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G-----~~~~~v~~~~eL~~aL~~a~~--~~~p~lIeV~~~~~~~~~~~~~~~~~~~~~ 469 (983)
..+...+++||.++|++|| +++.+|++.+||+++|+++++ .++|+||||.+++++....+..+..++++.
T Consensus 494 --~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~~~~~~~~~ 570 (578)
T PLN02573 494 --GPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVSAA 570 (578)
T ss_pred --cCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHHHHHHHhhc
Confidence 1123336799999999996 899999999999999999984 699999999999988877777777766553
No 48
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=7.7e-55 Score=517.73 Aligned_cols=391 Identities=15% Similarity=0.130 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.+++|++.|.+++ |||||+||.|.+....... ..+.... ... +....+...++++++
T Consensus 141 ~~~~i~~a~~~A~~~~-gPv~l~iP~Dv~~~~~~~~---------------~~~~~~~---~~~-~~~~~~~~~i~~a~~ 200 (539)
T TIGR03393 141 ATAEIDRVITTALRER-RPGYLMLPVDVAAKAVTPP---------------VNPLVTH---KPA-HADSALRAFRDAAEN 200 (539)
T ss_pred hHHHHHHHHHHHHhcC-CCEEEEecccccCCccCCC---------------CcccCcC---CCC-CChHHHHHHHHHHHH
Confidence 5788999999999864 9999999999643322110 0000000 000 011112345899999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-ccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-ESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-~~~~~~~ 159 (983)
+|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.++..++. .++..++
T Consensus 201 ~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~-g------kg~~~~~hpl~--lG~~~g~~~~~~~~~~~~ 271 (539)
T TIGR03393 201 KLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLM-G------KGILDEQQAGF--YGTYSGSASTGAVKEAIE 271 (539)
T ss_pred HHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcc-c------CccccCcCCCe--EEEEeCCCCCHHHHHHHh
Confidence 99999999999999986 55678999999999999999997 7 89999999996 7887544444 5667889
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
+||+||++|+++++..+.+|...+.+.++||||.|+..+++++..++.+ +|++.+|++|++.+.. .|....
T Consensus 272 ~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~----~~~~~~---- 342 (539)
T TIGR03393 272 GADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAGL----MWSSSG---- 342 (539)
T ss_pred hCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhccc----cccccc----
Confidence 9999999999998766655533344556899999999998888888887 9999999999886532 232110
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.... ........++++..+++.|++.+|++++|+.|.|+ +. |..+++.+ ..+++|+ .+++
T Consensus 343 -~~~~--~~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~----~~-~~~~~~~~-~~~~~~~-----------~~~~ 402 (539)
T TIGR03393 343 -AIPF--PQPDESRSALSQENFWQTLQTFLRPGDIILADQGT----SA-FGAADLRL-PADVNFI-----------VQPL 402 (539)
T ss_pred -ccCc--CCCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCc----hh-hhhhhccC-CCCCeEE-----------echh
Confidence 0000 00001224699999999999999999999999998 33 44445443 3343333 3578
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||| |+|+||||++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|++++.... .
T Consensus 403 ~g~mG~--glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~--~~lpi~~vV~NN~~y~~i~~~~~--------~ 470 (539)
T TIGR03393 403 WGSIGY--TLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLR--DKQHPIILVLNNEGYTVERAIHG--------A 470 (539)
T ss_pred hhhhhh--HHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHH--cCCCCEEEEEeCCceEEEEeecC--------C
Confidence 899999 999999999999 9999999999999999999999999 99999999999999999975321 1
Q ss_pred ccccccCCCCCHHHHHHHcCCc----eeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHH
Q 041113 399 DQYFYTTHNISIQNLCLAHGLN----HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSML 462 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~~----~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~ 462 (983)
+..+....++||+++|++||++ +.+|++.+||+++|+++++.++|+||||.+++++.++.+.++
T Consensus 471 ~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~p~~~~~~ 538 (539)
T TIGR03393 471 EQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEVVLPKADIPPLLGAL 538 (539)
T ss_pred CCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEEEcCcccCCHHHHhc
Confidence 1112233569999999999995 899999999999999999999999999999999888877664
No 49
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=2.7e-54 Score=515.66 Aligned_cols=396 Identities=17% Similarity=0.155 Sum_probs=307.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++++||++.|+++|+|||||+||.|....+... ...... . . +...++++.+++++
T Consensus 141 ~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~~~~~-----------------~~~~~~-~-~---~~~~~~~~~i~~~~ 198 (557)
T PRK08199 141 RIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEV-----------------PDAPPY-R-R---VAAAPGAADLARLA 198 (557)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhCcccc-----------------cccCCc-C-C---CCCCCCHHHHHHHH
Confidence 367899999999999999999999999853222100 000000 0 0 12235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|.+||||+|++|+|+. .++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..++...+..++
T Consensus 199 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~-~------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~ 269 (557)
T PRK08199 199 ELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR-R------QDLFDNRHPNY--AGDLGLGINPALAARIR 269 (557)
T ss_pred HHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC-c------CCCCCCCChhh--ccCCcCcCCHHHHHHHH
Confidence 999999999999999986 45678999999999999999997 6 89999999996 67887666666667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhc---CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEEC---FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLR 236 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~---~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~ 236 (983)
+|||||++|+++++..+..|.... ++.++||||.|+..+++++..++.|++|++.+|++|.+.... ....|.+.+.
T Consensus 270 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~~-~~~~~~~~~~ 348 (557)
T PRK08199 270 EADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEPP-ASPAWAEWTA 348 (557)
T ss_pred hCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcccc-cchhHHHHHH
Confidence 999999999999766654332211 234799999999999999999999999999999999886432 2345765544
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+..+.... .......++++..+++.|++.+|++++++.|+|+ +..|..+++.. .+|++|+
T Consensus 349 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~d~g~----~~~~~~~~~~~-~~~~~~~------------ 410 (557)
T PRK08199 349 AAHADYLAWS-APLPGPGAVQLGEVMAWLRERLPADAIITNGAGN----YATWLHRFFRF-RRYRTQL------------ 410 (557)
T ss_pred HHHHHHHhhc-cccCCCCCcCHHHHHHHHHHhCCCCeEEEECChH----HHHHHHHhcCc-CCCCeEE------------
Confidence 4333222111 1112234799999999999999999999999998 55555444443 3333332
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
..++|+||| |+|+|||+++++ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+..
T Consensus 411 ~~~~g~mG~--glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~--~~l~i~~vv~nN~~~~~~~~~~~~----- 481 (557)
T PRK08199 411 APTSGSMGY--GLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQ--YGLPIIVIVVNNGMYGTIRMHQER----- 481 (557)
T ss_pred CCCCccccc--hHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHH-----
Confidence 245699999 999999999999 9999999999999999999999999 999999999999999998653110
Q ss_pred cccccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 396 RILDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 396 ~~~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
....++..+. .++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 482 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~li~v~~~~~~~ 542 (557)
T PRK08199 482 EYPGRVSGTDLTNPDFAALARAYGGHGETVERTEDFAPAFERALASGKPALIEIRIDPEAI 542 (557)
T ss_pred hcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCHHHc
Confidence 1112222332 46899999999999999999999999999999989999999999997654
No 50
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-54 Score=510.96 Aligned_cols=385 Identities=16% Similarity=0.164 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++++++|++.|+++ +|||||+||.|++.... + .+...... . ........++++++
T Consensus 135 ~~~~i~~A~~~a~~~-~GPV~l~iP~Dv~~~~~-~-----------------~~~~~~~~-~----~~~~~~~~i~~~~~ 190 (549)
T PRK06457 135 AEYIIRRAIREAISK-RGVAHINLPVDILRKSS-E-----------------YKGSKNTE-V----GKVKYSIDFSRAKE 190 (549)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEeCHhHhhccc-c-----------------cccccccC-C----CCCCCHHHHHHHHH
Confidence 678999999999996 59999999999632211 0 00000000 0 00111247889999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+||+|+|++ ++.+++++|||++|+||++|++ | ||+||++||++ +|.+|..++..++..+++|
T Consensus 191 ~L~~AkrPvii~G~g~~-~a~~~l~~lAe~~~~PV~tt~~-g------kg~~~~~hp~~--~G~~g~~~~~~~~~~l~~a 260 (549)
T PRK06457 191 LIKESEKPVLLIGGGTR-GLGKEINRFAEKIGAPIIYTLN-G------KGILPDLDPKV--MGGIGLLGTKPSIEAMDKA 260 (549)
T ss_pred HHHcCCCcEEEECcchh-hHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCCCCCCHHHHHHHHhC
Confidence 99999999999999987 4568999999999999999986 7 89999999995 7888877777777788999
Q ss_pred CEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
|+||++|+++.... | +. ..++||||.|+..+++++..++.|.+|++.+++.+... ....|.+.+.....
T Consensus 261 Dlvl~lG~~~~~~~---~---~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~~~~----~~~~~~~~~~~~~~ 330 (549)
T PRK06457 261 DLLIMLGTSFPYVN---F---LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNIDIEE----KSDKFYEELKGKKE 330 (549)
T ss_pred CEEEEECCCCChhh---c---CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHhhc----ccchhHHHHHHHHH
Confidence 99999999985221 2 22 34799999999999999999999999999999654321 11234333332222
Q ss_pred HHHHHHHhh-hcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 241 MVASEISFQ-ICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.|....... ...+.++++.+++++|++.+|++++++.|.|+ +.+|..+++.. ..|++|+ .+++
T Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~ 394 (549)
T PRK06457 331 DWLDSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGN----VTMWTARHFRA-SGEQTFI-----------FSAW 394 (549)
T ss_pred HHHHHHHHhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhCCC-CCCCeEE-----------eCCC
Confidence 232222111 11235799999999999999999999999998 56666655553 4444443 3578
Q ss_pred CCCCCccchHHHHHhhhhcc--CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC--NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~--~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
+|+||| |+|+||||++|+ +++||+|+|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ..
T Consensus 395 ~g~mG~--glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~--~~lpi~ivV~NN~~~g~i~~~q~~-----~~ 465 (549)
T PRK06457 395 LGSMGI--GVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKK--YDLPVKIIIYNNSKLGMIKFEQEV-----MG 465 (549)
T ss_pred cchhhh--hHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHH--HCCCeEEEEEECCccchHHHHHHH-----hc
Confidence 999999 999999999997 6999999999999999999999999 999999999999999999753210 00
Q ss_pred cccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+.....+.+++||+++|++||+++.+|++++||+++|+++++.++|+||||.+++++.
T Consensus 466 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 523 (549)
T PRK06457 466 YPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEIIEEFLNTKGPAVLDAIVDPNER 523 (549)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 1111112246899999999999999999999999999999999999999999997664
No 51
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=5.2e-54 Score=513.90 Aligned_cols=398 Identities=16% Similarity=0.128 Sum_probs=299.1
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+|||+.|+++|||||||+||.|.+......... ..+........ ....++++.+++++
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~-------------~~~~~~~~~~~---~~~~~~~~~l~~~~ 207 (569)
T PRK09259 144 DIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEA-------------LTSLVKVVDPA---PAQLPAPEAVDRAL 207 (569)
T ss_pred HHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhCccccccc-------------ccccccccCCC---CCCCCCHHHHHHHH
Confidence 368899999999999999999999999954322210000 00000000000 11235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.. .+..++
T Consensus 208 ~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~-g------kg~~~e~hpl~--~G~~-------~~~~l~ 271 (569)
T PRK09259 208 DLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSM-A------KGLLPDTHPQS--AAAA-------RSLALA 271 (569)
T ss_pred HHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEeccc-c------cccCCCCChhh--hhHH-------HHHHHh
Confidence 999999999999999987 45678999999999999999998 6 89999999996 5532 234578
Q ss_pred CCCEEEEeCCccccHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC---CCChhHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP---HRSSKWCSFL 235 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~---~~~~~w~~~~ 235 (983)
+||+||+||+++++..+.++...+ +..++||||.|+..++.+++.++.+.+|++.+|++|.+.+.. .....|.+.+
T Consensus 272 ~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~ 351 (569)
T PRK09259 272 NADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDAL 351 (569)
T ss_pred cCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHH
Confidence 999999999999765543332233 335799999999999999999999999999999999987753 2345676665
Q ss_pred HHHHHHHHHHHHhhh-cccCCCCHHHHHHHHHhhcC--CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCc
Q 041113 236 RALDMMVASEISFQI-CADYSLTEPHVAHELSRALT--SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~--~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
...+..+........ ....++++..+++.|++.++ ++.+++.+.+. +..|...++.+ ..|++|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~----~~~~~~~~~~~-~~p~~~~-------- 418 (569)
T PRK09259 352 AERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGAN----TLDLARNIIDM-YKPRHRL-------- 418 (569)
T ss_pred HHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCCEEEEeCchH----HHHHHHHhccc-CCCCceE--------
Confidence 544433222221111 12357999999999999995 47777777665 33454444443 4454443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCc--cccCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGA--IFSLLPIA 390 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g--~~~~~~~~ 390 (983)
.++++|+||| |+|+|||+++|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|. +.+....
T Consensus 419 ---~~~~~gsmG~--glpaaiGa~la~~~~vv~i~GDG~f~m~~~EL~Ta~r--~~lpi~~vV~NN~~~~~~~~~~~~~- 490 (569)
T PRK09259 419 ---DCGTWGVMGI--GMGYAIAAAVETGKPVVAIEGDSAFGFSGMEVETICR--YNLPVTVVIFNNGGIYRGDDVNLSG- 490 (569)
T ss_pred ---eCCCCccccc--cHHHHHHHHhcCCCcEEEEecCccccccHHHHHHHHH--cCCCEEEEEEeChhHHHHHHHHhhc-
Confidence 3577899999 9999999999988999999999999999999999999 9999999999999861 1110000
Q ss_pred CCCCcccccccccc--CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHH
Q 041113 391 DRTEPRILDQYFYT--THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATF 458 (983)
Q Consensus 391 ~~~~~~~~~~~~~~--~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~ 458 (983)
......+ .+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++++.++.
T Consensus 491 -------~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~id~~~~~~~ 553 (569)
T PRK09259 491 -------AGDPSPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHALTEAIASGKPTLINVVIDPAAGTES 553 (569)
T ss_pred -------CCCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence 0011111 247999999999999999999999999999999999999999999998776553
No 52
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-54 Score=511.92 Aligned_cols=390 Identities=18% Similarity=0.162 Sum_probs=298.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++|+|||||+||.|++..+.... .+...... ....++++.+++++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~----------------~~~~~~~~-----~~~~~~~~~i~~~~ 195 (535)
T PRK07524 137 DLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHL----------------LPAPPTRP-----ARPGPAPAALAQAA 195 (535)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCHhHHhcccccc----------------cCcccccC-----CCCCCCHHHHHHHH
Confidence 3678999999999999999999999999643332110 00000000 11235677899999
Q ss_pred HHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 81 ELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
++|++||||+|++|+|++ ++.+++.+|||++++||++|++ | ||.||++||++ +|..+ ++..++..+++
T Consensus 196 ~~L~~AkrPvil~G~g~~-~a~~~l~~lae~l~~pV~tt~~-~------kg~~p~~hp~~--~G~~~--~~~~~~~~~~~ 263 (535)
T PRK07524 196 ERLAAARRPLILAGGGAL-AAAAALRALAERLDAPVALTIN-A------KGLLPAGHPLL--LGASQ--SLPAVRALIAE 263 (535)
T ss_pred HHHHhCCCcEEEECCChH-HHHHHHHHHHHHHCCCEEEccc-c------cccCCCCChhh--ccCCC--CCHHHHHHHHh
Confidence 999999999999999987 4678999999999999999997 6 89999999996 56554 34456667889
Q ss_pred CCEEEEeCCccccHHHHH-HHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCC-ChhHHHH-HH
Q 041113 161 FDVIIQIGSRITSKRISQ-MIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHR-SSKWCSF-LR 236 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~-~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~-~~~w~~~-~~ 236 (983)
|||||++|+++.+..+.. |...+. +.++||||.|+.+++++++.++.|.+|++.+|++|.+.+.... ...|... ++
T Consensus 264 aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~ 343 (535)
T PRK07524 264 ADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPGQAAAADWGAARVA 343 (535)
T ss_pred CCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHH
Confidence 999999999986544321 112233 3469999999999999999999999999999999999875432 2345422 21
Q ss_pred HHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 237 ALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
..+.. ..... .+...++..+++.|++.+| +.+++.|.|. +.+|..++++. ++|++|+. .
T Consensus 344 ~~~~~----~~~~~-~~~~~~~~~~~~~l~~~l~-~~~i~~d~g~----~~~~~~~~~~~-~~p~~~~~----------~ 402 (535)
T PRK07524 344 ALRQA----LRAEW-DPLTAAQVALLDTILAALP-DAIFVGDSTQ----PVYAGNLYFDA-DAPRRWFN----------A 402 (535)
T ss_pred HHHHh----chhhc-cccccCHHHHHHHHHHhCC-CCEEEeCCcH----HHHHHHHhccc-CCCCceEe----------C
Confidence 21111 11111 1234667889999999998 6888889888 55565555553 45554442 1
Q ss_pred eecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEP 395 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~ 395 (983)
++++|+||| ++|+|||+++|+ +++||+++|||||+|++|||+|+++ |++|+++||+||++|++++..+...
T Consensus 403 ~~~~g~mG~--~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~--~~lpi~~vV~NN~~~g~i~~~~~~~---- 474 (535)
T PRK07524 403 STGYGTLGY--GLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVE--ADLPLIVLLWNNDGYGEIRRYMVAR---- 474 (535)
T ss_pred CCCcccccc--hHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHH--hCCCeEEEEEECCchHHHHHHHHHh----
Confidence 578899999 999999999999 9999999999999999999999999 9999999999999999987532110
Q ss_pred cccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 396 RILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 396 ~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.......+.+++||.++|++||+++.+|++.+||+++|+++++.++|+||||.+++-
T Consensus 475 -~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~ 531 (535)
T PRK07524 475 -DIEPVGVDPYTPDFIALARAFGCAAERVADLEQLQAALRAAFARPGPTLIEVDQACW 531 (535)
T ss_pred -cCCccccCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence 011111223579999999999999999999999999999999999999999999864
No 53
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.4e-53 Score=474.27 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=265.5
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKI 573 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~ 573 (983)
||++|+++.+. ++.++|||+|++|++||||+.+.. .. ..+...++.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~--------------------~~~~~V~i~~~~G~~G~GE~~~~~-~~---~~~~~~~~~l~p~l~G~d~ 56 (352)
T cd03325 1 KITKIETFVVP--------------------PRWLFVKIETDEGVVGWGEPTVEG-KA---RTVEAAVQELEDYLIGKDP 56 (352)
T ss_pred CeEEEEEEEEC--------------------CCEEEEEEEECCCCEEEeccccCC-cc---hHHHHHHHHHHHHhCCCCH
Confidence 68888876541 235799999999999999997532 11 2234455679999999999
Q ss_pred cccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC
Q 041113 574 SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN 653 (983)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~ 653 (983)
.+++.++..+. ............++++|||||||||+||.+|+|||+||||.. +.+|++|+++. .
T Consensus 57 ~~~~~~~~~~~-----~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~---------~~~i~~~~~~~-~ 121 (352)
T cd03325 57 MNIEHHWQVMY-----RGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQV---------RDRVRVYSWIG-G 121 (352)
T ss_pred HHHHHHHHHHH-----HhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCc---------cceeEEEEeCC-C
Confidence 87665553221 110011122246799999999999999999999999999975 47899998764 4
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC-------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR-------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~-------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~ 726 (983)
.+++++.+++++++++||++||+|+|.. .++++|+++|+++|+++|+++.||||+|++||+++|+++++.|++
T Consensus 122 ~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~ 201 (352)
T cd03325 122 DRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEP 201 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 5788899999999999999999999841 146789999999999999999999999999999999999999999
Q ss_pred CCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
+++.|||||++ +++++++|++++++||++||++++..+ +..+++. .+|++|+|++++||++++++++++|++
T Consensus 202 ~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~ 276 (352)
T cd03325 202 YRLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWD-----FKELLEDGAVDIIQPDISHAGGITELKKIAAMAEA 276 (352)
T ss_pred cCCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 99999999998 788999999999999999999998764 5555544 579999999999999999999999999
Q ss_pred cCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCee
Q 041113 804 HGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFV 879 (983)
Q Consensus 804 ~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGl 879 (983)
+|++++.|+ +++++++++++|+++++++.. . .++.+... . .....++...+..+|+.+++ +|++|||
T Consensus 277 ~gi~~~~h~-~~s~i~~~a~~hlaa~~~~~~--~---~e~~l~~~--~-~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGL 347 (352)
T cd03325 277 YDVALAPHC-PLGPIALAASLHVDASTPNFL--I---QEQSLGIH--Y-NEGDDLLDYLVDPEVFDMENGYVKLPTGPGL 347 (352)
T ss_pred cCCcEeccC-CCChHHHHHHHHHHHhcccHH--h---hhcccccC--c-ccchhhhhhhccCCCCeeeCCEEECCCCCcc
Confidence 999987554 699999999999999988642 1 01100000 0 00112232223336787773 9999999
Q ss_pred eEEec
Q 041113 880 EASVA 884 (983)
Q Consensus 880 Gv~~d 884 (983)
|+++|
T Consensus 348 Gi~~d 352 (352)
T cd03325 348 GIEID 352 (352)
T ss_pred CeeeC
Confidence 99986
No 54
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-54 Score=514.35 Aligned_cols=386 Identities=18% Similarity=0.204 Sum_probs=298.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|.++++|||||+||.|++....... ..... . . . +...++++.++++++
T Consensus 140 ~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~~~-~-~-~---~~~~~~~~~i~~~~~ 198 (544)
T PRK07064 140 ALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELP---------------DDLAP-V-H-V---AVPEPDAAAVAELAE 198 (544)
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCHhHhhcccccc---------------ccccc-c-c-C---CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999643322100 00000 0 0 0 122356678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|.+||||+|++|+|++ .+.+++.+||| +|+||++|++ | ||+||++||++ +|.++ ++..++..+++|
T Consensus 199 ~l~~AkrPvi~~G~g~~-~a~~~l~~lae-~~~pv~~t~~-~------kg~~~~~hp~~--~G~~~--~~~~~~~~~~~a 265 (544)
T PRK07064 199 RLAAARRPLLWLGGGAR-HAGAEVKRLVD-LGFGVVTSTQ-G------RGVVPEDHPAS--LGAFN--NSAAVEALYKTC 265 (544)
T ss_pred HHHhCCCCEEEECCChH-hHHHHHHHHHH-cCCCEEEccC-c------cccCCCCChhh--cccCC--CCHHHHHHHHhC
Confidence 99999999999999986 45678999999 9999999997 6 89999999995 67776 445555677899
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC--CChhHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH--RSSKWCSFLRALD 239 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~--~~~~w~~~~~~~~ 239 (983)
||||+||+++++..+..|.. ..+.++||||.|+..++++++.++.+.+|++.+|++|.+.+... ....|.+.+...+
T Consensus 266 Dlvl~iG~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 344 (544)
T PRK07064 266 DLLLVVGSRLRGNETLKYSL-ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAR 344 (544)
T ss_pred CEEEEecCCCCccccccccc-CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHH
Confidence 99999999998777655532 22457999999999999999999999999999999998876432 2345766554443
Q ss_pred HHHHHHHHhhhcccCCCCH-HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQICADYSLTE-PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
..+... . ...+.+ ..+++.|++.+|++++++.|.|.. ...|..+++++ ..|+++ + ++
T Consensus 345 ~~~~~~----~--~~~~~~~~~~~~~l~~~l~~~~ii~~d~~~~---~~~~~~~~~~~-~~p~~~----------~--~~ 402 (544)
T PRK07064 345 EAAVAD----L--RKGLGPYAKLVDALRAALPRDGNWVRDVTIS---NSTWGNRLLPI-FEPRAN----------V--HA 402 (544)
T ss_pred Hhhhhh----c--ccccCcHHHHHHHHHHhCCCCCEEEeCCccc---hHHHHHHhcCc-cCCCce----------e--cc
Confidence 322111 1 123554 469999999999999999998741 24454444443 333332 2 24
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
+.|+||| ++|+|||+++|+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.... .
T Consensus 403 ~~g~mG~--~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~yg~~~~~~~~~~----~ 474 (544)
T PRK07064 403 LGGGIGQ--GLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQ--ENANMVIVLMNDGGYGVIRNIQDAQY----G 474 (544)
T ss_pred CCCcccc--ccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHH--hCCCeEEEEEeCChhHHHHHHHHHhc----C
Confidence 4499999 999999999999 9999999999999999999999999 99999999999999999976432110 0
Q ss_pred cccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 398 LDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
....+.+.+++||+++|++||+++.+|++++||+++|+++++.++|+||||.++.
T Consensus 475 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~~~~ 529 (544)
T PRK07064 475 GRRYYVELHTPDFALLAASLGLPHWRVTSADDFEAVLREALAKEGPVLVEVDMLS 529 (544)
T ss_pred CccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 1112223357999999999999999999999999999999999999999999974
No 55
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=7.4e-53 Score=473.31 Aligned_cols=357 Identities=15% Similarity=0.137 Sum_probs=270.8
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC---C--CEEEEeecCcCcCcccHHHHHHHHHHHHhHh
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED---G--SVGYGEVAPLEIHKENLLDAEEQLRFLLHFM 568 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~---G--~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l 568 (983)
||.+ ++.+++|+++||.++.+++ ..++.++|+|+||+ | ++||||+.. + +.... ....+.++|.|
T Consensus 1 ~~~~--~~~~~~Pl~~p~~~a~~~~----~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~---~~~~~-~~i~~~~~p~L 69 (385)
T cd03326 1 RIVA--IREKAIPLSSPIANAYVDF----SGLTTSLVAVVTDVVRDGRPVVGYGFDSI-G---RYAQG-GLLRERFIPRL 69 (385)
T ss_pred Ccee--eEEEecCCCCCccCceeee----eccEEEEEEEEeccccCCCceeEEEeccC-C---chhHH-HHHHHHHHHHh
Confidence 3544 4588899999999998765 34888999999999 9 999999862 1 11111 11224588999
Q ss_pred ccCccccc-ccccccCchhhhhhhcC----CCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccce
Q 041113 569 TGAKISYF-LPLLKGSFSSWIWSTLG----IPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTS 643 (983)
Q Consensus 569 ~g~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~ 643 (983)
+|+++.++ +.+......+.+|+.+. ....+....|++|||||||||+||.+|+|||+||||..+ .-..+++
T Consensus 70 iG~dp~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~----~~~~~~~ 145 (385)
T cd03326 70 LAAAPDSLLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYG----RGQADPR 145 (385)
T ss_pred cCCChHHhhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCccc----CCCCCCe
Confidence 99999855 22222112222222221 112223457999999999999999999999999998630 0001368
Q ss_pred eEEEEeec---CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 644 IKICALID---SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 644 i~~~~~~~---~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
|++|++.. ...+++++.+++++++++||++||+|+|. .++++|+++|+++|+++|+++.||+|+|++||.++|+++
T Consensus 146 v~~y~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~-~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 146 VPVYAAGGYYYPGDDLGRLRDEMRRYLDRGYTVVKIKIGG-APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCCC-CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 99998642 13468889999999999999999999986 368899999999999999999999999999999999999
Q ss_pred HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-c----eEEEEcCCCcCCHHH
Q 041113 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-I----VAIVIKPSVIGGFEN 793 (983)
Q Consensus 721 ~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~----~~i~~k~~~~GGl~~ 793 (983)
++.|+++++.|||||++ |++++++|++++++||++||+++++.+ +..+++.+ + |++|+|++++||+|+
T Consensus 225 ~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~-----~~~li~~~a~~~~~div~~d~~~~GGit~ 299 (385)
T cd03326 225 AKALAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQD-----ARNLLRYGGMRPDRDVLQFDPGLSYGLPE 299 (385)
T ss_pred HHHhhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHH-----HHHHHHhCCccccCCEEEeCchhhCCHHH
Confidence 99999999999999998 789999999999999999999999864 66666544 3 999999999999999
Q ss_pred HHHHHHHHHHcCCcE--EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee
Q 041113 794 AGLIARWAQRHGKMA--VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC 871 (983)
Q Consensus 794 ~~~~~~~A~~~gi~~--~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~ 871 (983)
+++++++|+++|+++ +.+|. +..+++|+++++++. .. +. + +. ++.. .+.+.+++.++
T Consensus 300 ~~kia~lA~a~gi~~~~~~pH~-----~~~a~lhl~aa~~~~--~~----e~-~-~~----~~~~----~~~~~~~~~~~ 358 (385)
T cd03326 300 YLRMLDVLEAHGWSRRRFFPHG-----GHLMSLHIAAGLGLG--GN----ES-Y-PD----VFQP----FGGFADGCKVE 358 (385)
T ss_pred HHHHHHHHHHcCCCCceeecch-----HHHHHHHHHhcCCCc--ee----EE-e-cc----ccch----hhhcCCCCcee
Confidence 999999999999982 44553 456889999987741 11 00 0 00 0010 12223455555
Q ss_pred ----ccCCCCeeeEEecchhhhhhhcc
Q 041113 872 ----HNSCRGFVEASVAKATHILQNLQ 894 (983)
Q Consensus 872 ----~~P~~pGlGv~~d~a~~~~~~~~ 894 (983)
.+|++||||+++| ++.+++++
T Consensus 359 ~G~i~~p~~PGlGield--~~~~~~~~ 383 (385)
T cd03326 359 NGYVRLPDAPGIGFEGK--AELAAEMR 383 (385)
T ss_pred CCEEECCCCCCCCcccC--HHHHHHHh
Confidence 3999999999999 87777654
No 56
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.9e-53 Score=510.62 Aligned_cols=405 Identities=17% Similarity=0.130 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccc-cccccccccccccchhhHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTK-YIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++.+++|++.|+++++|||||+||.|.+..+.... ..+... ...... ....+++..+++++
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~~i~~~~ 207 (578)
T PRK06112 145 IDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAP---------------AAPRSNSLGHFPL--DRTVPAPQRLAEAA 207 (578)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCHhHhhCccccc---------------cCcccccccCCCC--CCCCCCHHHHHHHH
Confidence 678899999999999999999999999543222100 000000 000000 01235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccC-----cc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLS-----ES 154 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~-----~~ 154 (983)
++|++||||+||+|+|+. +++.+++.+|||++|+||++|++ | ||+||++||++ +|.+|..+.. .+
T Consensus 208 ~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~-~------kg~~p~~hp~~--~G~~g~~~~~~~~~~~~ 278 (578)
T PRK06112 208 SLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNM-G------KGAVDETHPLS--LGVVGSLMGPRSPGRHL 278 (578)
T ss_pred HHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccc-c------cccCCCCCccc--cccccccCCCccchHHH
Confidence 999999999999999876 45678999999999999999997 6 89999999996 6777654322 34
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCC-------C
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-------R 227 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~-------~ 227 (983)
...+++||+||+||+++++..+.+|....+..++||||.|+.++++++. ++.|.+|++.+|++|++.+... .
T Consensus 279 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~ 357 (578)
T PRK06112 279 RDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYE-ALRLVGDARLTLAALTDALRGRDLAARAGR 357 (578)
T ss_pred HHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCcccc-ceEEEeCHHHHHHHHHHhhhhccccccccc
Confidence 5567899999999999987776555332233579999999999988776 6899999999999998866421 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHh-hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccccccccccccc
Q 041113 228 SSKWCSFLRALDMMVASEISF-QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306 (983)
Q Consensus 228 ~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 306 (983)
...|...+......+...... ......++++.++++.|++.+|++++++.|+|+ +.+|...++.. ..|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~------ 426 (578)
T PRK06112 358 RAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIVVADASY----SSIWVANFLTA-RRA------ 426 (578)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEEcccH----HHHHHHHhcCc-cCC------
Confidence 234544333222221111111 112235799999999999999999999999998 55666554442 222
Q ss_pred CCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCcccc
Q 041113 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFS 385 (983)
Q Consensus 307 ~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~ 385 (983)
+..+..+.++|+||+ ++|+|||+++|+ +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++
T Consensus 427 ----~~~~~~~~g~gsmG~--~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~--~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 427 ----GMRFLTPRGLAGLGW--GVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARR--MGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred ----CceEECCCCcccccc--HHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHH--hCCCeEEEEEeCCccCCEE
Confidence 222223578899999 999999999999 8999999999999999999999999 9999999999999999876
Q ss_pred CCCCCCCCCcccccc-ccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHH
Q 041113 386 LLPIADRTEPRILDQ-YFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATF 458 (983)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~ 458 (983)
+.+.. .+.. ... ...++||.++|++||+++++|++.+||+++|+++++.++|+||||.+++++.++.
T Consensus 499 ~~~~~------~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIev~~~~~~~p~~ 567 (578)
T PRK06112 499 HAETV------KFGTHTDACHFAAVDHAAIARACGCDGVRVEDPAELAQALAAAMAAPGPTLIEVITDPSAFPPI 567 (578)
T ss_pred ecccc------ccCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcCcccCCCc
Confidence 43211 1111 111 1246999999999999999999999999999999999999999999998876653
No 57
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=2.3e-53 Score=453.05 Aligned_cols=405 Identities=20% Similarity=0.162 Sum_probs=305.0
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+|+..+++|++.|++|+|||||+++|.|..+.....+.+ .+ -..+.+..+. + +.+.|++..|++++
T Consensus 146 ~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~------~~----~~~p~~~~p~-P---~i~~p~~s~i~~av 211 (571)
T KOG1185|consen 146 DIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKE------ID----VSEPQPPIPL-P---PIPGPPPSQIQKAV 211 (571)
T ss_pred hccHHHHHHHHHHhcCCCCceEEecccceeeeecccccc------cc----cCCCCCCCCC-C---CCCCCCHHHHHHHH
Confidence 478899999999999999999999999943322111000 00 0011111111 1 24567888999999
Q ss_pred HHHhcCCceEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+||+|.|+.. .+.++|++|.|++|+|++.|+| | ||++|++||+++ +.+...+++
T Consensus 212 ~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpM-g------KGll~d~hPl~v---------~~aRS~ALk 275 (571)
T KOG1185|consen 212 QLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPM-G------KGLLPDNHPLNV---------SSARSLALK 275 (571)
T ss_pred HHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcc-c------ccCCCCCCchhh---------hHHHHHHHh
Confidence 9999999999999999864 4567999999999999999999 7 899999999962 234456789
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCC-CCeeEEEEcCHHHHHHHHHhccCCC-----CChhHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPS-HSVTHRIQSTIVQFVDFLLKVQVPH-----RSSKWC 232 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~-~~~~~~i~~d~~~~l~~L~~~~~~~-----~~~~w~ 232 (983)
.||+||++|+|++..-..+..+.+.+ .++||||+++++++.+ ..+++.|.+|++.++.+|.+.+... ..++|.
T Consensus 276 ~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~ 355 (571)
T KOG1185|consen 276 KADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWV 355 (571)
T ss_pred hCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHH
Confidence 99999999999974333333233433 3799999999999888 7899999999999999999988652 234899
Q ss_pred HHHHHHHHHHHHHHHhh-hcccCCCCHHHHHHHHHhhcC-CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCC
Q 041113 233 SFLRALDMMVASEISFQ-ICADYSLTEPHVAHELSRALT-SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFP 310 (983)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~-~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 310 (983)
+.+++..++.+....+. .....++++.++++.|++.|| ++.|+|.+.++.+.... ..+. .+.|+
T Consensus 356 k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr----~~l~-~~~Pr--------- 421 (571)
T KOG1185|consen 356 KELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGR----TLLP-PRGPR--------- 421 (571)
T ss_pred HHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhh----hhcc-CCCcc---------
Confidence 99888777665544432 233567999999999999999 77788887777322111 1111 13444
Q ss_pred CcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCC-CccccCCC
Q 041113 311 HQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHG-GAIFSLLP 388 (983)
Q Consensus 311 ~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g-~g~~~~~~ 388 (983)
+++. .+.||+||. |+++|||||++. +++|+|+.||++|.|+.+|++|++| ||+|+++||+||+| ||.-..-.
T Consensus 422 -~rLD-aGtfgTMGV--G~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR--~~Lpvv~vV~NN~Giyg~d~~~~ 495 (571)
T KOG1185|consen 422 -RRLD-AGTFGTMGV--GLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVR--YKLPVVIVVGNNNGIYGLDDDGW 495 (571)
T ss_pred -cccC-Ccccccccc--chhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHH--hcCCeEEEEecCCcccccCcccH
Confidence 4443 688999999 999999999999 9999999999999999999999999 99999999997765 55432210
Q ss_pred CCC-CCCccccc-cccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccch
Q 041113 389 IAD-RTEPRILD-QYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANA 456 (983)
Q Consensus 389 ~~~-~~~~~~~~-~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~ 456 (983)
... .+. ...+ .......+.+|.+++++||.+++.|++++||..+++++++. ++|+||+|.|++.+..
T Consensus 496 ~~I~e~~-~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvINVlI~p~~~r 565 (571)
T KOG1185|consen 496 KQISEQD-PTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVINVLIGPTAFR 565 (571)
T ss_pred HHHhhcC-cccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEEEEecccccc
Confidence 000 000 0000 00111247899999999999999999999999999999875 4999999999987643
No 58
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.2e-52 Score=472.70 Aligned_cols=365 Identities=17% Similarity=0.143 Sum_probs=269.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECC-CCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccC
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLED-GSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA 571 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~-G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~ 571 (983)
+||++|+++.+++|++.|+..+.... .....+.++|||+||+ |++||||+.+..... ..+...++.++|.++|+
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~~~---~~~~~~~~~lap~liG~ 75 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMN--PDPDYSAAYVVLRTDAAGLKGHGLTFTIGRGN---EIVCAAIEALAHLVVGR 75 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCccccc--CCCCceEEEEEEEecCCCCEEEEEeccCCCch---HHHHHHHHHHHHHhCCC
Confidence 48999999999999999985543321 0122578999999999 999999986432122 22333456789999999
Q ss_pred cccccccccccCchhhhhhh---cCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccc-------ccc---
Q 041113 572 KISYFLPLLKGSFSSWIWST---LGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEID-------EEI--- 637 (983)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~-------~~~--- 637 (983)
++.+++..+.... ..+... .... ..+....|++|||+|||||+||.+|+|||+||||..+.+ .+.
T Consensus 76 d~~~i~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~ 154 (415)
T cd03324 76 DLESIVADMGKFW-RRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDA 154 (415)
T ss_pred CHHHHHHHHHHHH-HHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccc
Confidence 9987644332111 111100 0000 122335799999999999999999999999999953100 000
Q ss_pred ----------------c------cccceeEEEEee--cCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHH
Q 041113 638 ----------------S------KRSTSIKICALI--DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQE 693 (983)
Q Consensus 638 ----------------~------~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~ 693 (983)
. -.++++|+|++. +...+++++.+++++++++||++||+|+|. ++++|+++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~--~~~~d~~~v~a 232 (415)
T cd03324 155 LTPEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGA--DLEDDIRRCRL 232 (415)
T ss_pred cCHHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCC--CHHHHHHHHHH
Confidence 0 001578998642 123578899999999999999999999986 78999999999
Q ss_pred HHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhc---CCcEEeCCCccCcCCChHH
Q 041113 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES---GLPVALDETIDKFQKDPLN 768 (983)
Q Consensus 694 vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~---~ipIa~dEs~~~~~~~~~~ 768 (983)
+|+++|+++.||+|+|++|++++|+++++.|+++++.|||||++ +++++++|++++ ++||++||++++.++
T Consensus 233 vRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~---- 308 (415)
T cd03324 233 AREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPWWIEEPTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVV---- 308 (415)
T ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCCEEECCCCCCcHHHHHHHHHhcccCCCceecCCccCCHHH----
Confidence 99999999999999999999999999999999999999999998 788999999988 699999999999764
Q ss_pred HHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCC
Q 041113 769 MLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847 (983)
Q Consensus 769 ~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~ 847 (983)
+..+++. .+|++|+|++++||++++++++++|+++|++++.| . ++++.++++|+++++.++.... ..+
T Consensus 309 -~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH-~--s~~~~~a~~~~~~~~~~~~~~~-------~~~ 377 (415)
T cd03324 309 -FKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPH-A--GGVGLCELVQHLSMIDYICVSG-------SKE 377 (415)
T ss_pred -HHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEc-C--CHHHHHHHHHHhhcccccccCC-------ccc
Confidence 6666654 47999999999999999999999999999997654 3 6888888777665432110000 000
Q ss_pred CCccCccchhcccccCCCCCceeec----cCCCCeeeEEe
Q 041113 848 PVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASV 883 (983)
Q Consensus 848 ~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~ 883 (983)
.. .+....++. +++.+|+.+++ +|++|||||++
T Consensus 378 ~~--~~e~~~~~~-~~~~~~~~~~dG~l~lp~~PGLGve~ 414 (415)
T cd03324 378 GR--VIEYVDHLH-EHFVYPVVIQNGAYMPPTDPGYSIEM 414 (415)
T ss_pred cc--hhhhHHHHH-hhccCCCeeeCCEEECCCCCccCeee
Confidence 00 001011233 34457788774 99999999986
No 59
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=5.9e-54 Score=507.36 Aligned_cols=391 Identities=14% Similarity=0.086 Sum_probs=296.3
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.++||++.|++ +||||||+||.|.+..+.... ...... + +...+....+++++
T Consensus 139 ~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv~~~~~~~~----------------~~~~~~---~---~~~~~~~~~v~~~~ 195 (535)
T TIGR03394 139 TAPAEIARVLGSARE-LSRPVYLEIPRDMVNAEVEPV----------------PDDPAW---P---VDRDALDACADEVL 195 (535)
T ss_pred HhHHHHHHHHHHHHH-CCCCEEEEechhhccCccCCC----------------CCCCCC---C---CChHHHHHHHHHHH
Confidence 368899999999998 679999999999644332110 000000 0 01123456789999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccc-hhhhccCcccccc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDH-LDHALLSESVKDW 158 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~-~g~~~~~~~~~~~ 158 (983)
++|++||||+|++|+|++ +++.+++++|||++|+||+||++ | ||+||++||++ +|. .|..+++..+..+
T Consensus 196 ~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~-g------kg~~pe~hpl~--~G~~~G~~~~~~~~~~l 266 (535)
T TIGR03394 196 ARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFM-G------RGLLADAPTPP--LGTYLGVAGDAELSRLV 266 (535)
T ss_pred HHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccc-c------CcCCCCCCccc--cccccCCCCCHHHHHHH
Confidence 999999999999999986 45678999999999999999997 7 89999999996 674 5656666677788
Q ss_pred CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHH
Q 041113 159 IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRAL 238 (983)
Q Consensus 159 ~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~ 238 (983)
++|||||+||+++++..+..+....++.++||||.|+..++++++.++.+ +|+..+|.+|++.+.......|...+..
T Consensus 267 ~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~~~~~~~~~~~~~~~- 344 (535)
T TIGR03394 267 EESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGLPPSDRTTRGKGPHA- 344 (535)
T ss_pred HhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcccccccccccccccc-
Confidence 99999999999997654322212223457999999999999988888888 7888888888775432111111111110
Q ss_pred HHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCC--ceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE
Q 041113 239 DMMVASEISFQICADYSLTEPHVAHELSRALTSN--SALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV 316 (983)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 316 (983)
... .......++++.++++.|++.++++ .+++.|+|+ +.+|...+ ++++|+ .
T Consensus 345 ---~~~---~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~----~~~~~~~~-----~~~~~~-----------~ 398 (535)
T TIGR03394 345 ---YPR---GLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGD----CLFTAMDM-----DDAGLM-----------A 398 (535)
T ss_pred ---ccc---ccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCH----HHHHHHhc-----CCCcEE-----------C
Confidence 000 0001234699999999999999976 468899998 33343221 133333 3
Q ss_pred eecCCCCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
++++|+||| |+|+|||+++|..+++|+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .
T Consensus 399 ~~~~g~mG~--glpaaiGa~lA~~~r~v~i~GDG~f~m~~~EL~Ta~r--~~lpv~~vV~NN~~y~~~~~~~~~-----~ 469 (535)
T TIGR03394 399 PGYYAGMGF--GVPAGIGAQCTSGKRILTLVGDGAFQMTGWELGNCRR--LGIDPIVILFNNASWEMLRVFQPE-----S 469 (535)
T ss_pred cCccchhhh--HHHHHHHHHhCCCCCeEEEEeChHHHhHHHHHHHHHH--cCCCcEEEEEECCccceeehhccC-----C
Confidence 578899999 9999999999986677899999999999999999999 999999999999999999765311 0
Q ss_pred ccccccccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-CCCEEEEEEcCcccchHHHHHHHH
Q 041113 397 ILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-GTDRVIEVESCIDANATFHSMLRK 464 (983)
Q Consensus 397 ~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~~~~~~~~~~~ 464 (983)
. +....++||+++|++||+++.+|++.+||+++|+++++. ++|.||||.+++.+.++.++++.+
T Consensus 470 ~----~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~p~lIev~i~~~~~~~~~~~~~~ 534 (535)
T TIGR03394 470 A----FNDLDDWRFADMAAGMGGDGVRVRTRAELAAALDKAFATRGRFQLIEAMLPRGVLSDTLARFVQ 534 (535)
T ss_pred C----cccCCCCCHHHHHHHcCCCceEeCCHHHHHHHHHHHHhcCCCeEEEEEECCcccCCHHHHHHhc
Confidence 1 112246999999999999999999999999999999875 458999999999999988877653
No 60
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=444.97 Aligned_cols=400 Identities=17% Similarity=0.197 Sum_probs=318.9
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccch---hhHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTY---CQMA 77 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~i~ 77 (983)
|||+-|++||.+|++||||||.+++|.|+......++++.. ...|--.+-.. ....++. ..++
T Consensus 224 dlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~----------~~lPsn~~m~~----~~~~~~~~v~~~i~ 289 (675)
T KOG4166|consen 224 DLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQA----------MRLPSNAYMSR----MPKPPEDFVMSHIE 289 (675)
T ss_pred HhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhh----------hcCCchhhHhh----CCCCchhhHHHHHH
Confidence 58999999999999999999999999995322221111100 01111001000 0112233 5799
Q ss_pred HHHHHHhcCCceEEEEccCCC-hh-HHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc
Q 041113 78 EVLELVQGVNKGLLLVGAVHN-ED-EIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV 155 (983)
Q Consensus 78 ~~~~~L~~AkrPvIl~G~g~~-~~-~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~ 155 (983)
+++++|+.||||||.+|+|+. +. .-.+|.+|+|+++|||.+|.+ |+ |.++.+++++ +.++|++|+..++
T Consensus 290 ~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~-GL------Gs~d~~d~lS--LhMLGMHG~~yAN 360 (675)
T KOG4166|consen 290 QIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLM-GL------GSYDCDDELS--LHMLGMHGTVYAN 360 (675)
T ss_pred HHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhcCcceehhh-cc------cCcCCCCchh--hhhhcccccceeh
Confidence 999999999999999999986 33 345999999999999999999 84 9999999997 6899999999999
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhcCCc----------eEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEECFPC----------TYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP 225 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~----------~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~ 225 (983)
.+++++||||++|.||.+..|+ ....|.+. .+||+|++|..|++..++++.++||+...|..+...++.
T Consensus 361 ~Avq~aDLilA~GvRFDDRVTG-n~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn 439 (675)
T KOG4166|consen 361 YAVQHADLILAFGVRFDDRVTG-NLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKN 439 (675)
T ss_pred hhhhccceeEEecceecccccc-chhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhc
Confidence 9999999999999999765554 44444432 299999999999999999999999999999998876643
Q ss_pred C---CChhHHHHHHHHHHHHHHHHHhhhc---ccCCCCHHHHHHHHHhhcCC---CceEEEecCcchhhhhhhcCCCccc
Q 041113 226 H---RSSKWCSFLRALDMMVASEISFQIC---ADYSLTEPHVAHELSRALTS---NSALFVGNSMAIRDLDMYGRNWTTC 296 (983)
Q Consensus 226 ~---~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~---~~iv~~d~g~~~~~~~~~~~~~~~~ 296 (983)
. .+..|..++..+++. .+..+. ..+.+.|+.+++.|.+...+ ..+|..+.|+ ++||+.+++..
T Consensus 440 ~~~~~r~dW~~qin~wK~~----fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGq----HQMWAAqfy~w 511 (675)
T KOG4166|consen 440 RAEELRLDWRNQINVWKQK----FPLSFKEETPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQ----HQMWAAQFYNW 511 (675)
T ss_pred ccchhhhhHHHHHHHHHHh----CCeeeeccCCccccChHHHHHHHHHhccCcCceEEEeccccH----HHHHHHHHhcc
Confidence 2 344677666655543 222222 23569999999999998876 6677789999 99999988774
Q ss_pred ccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEE
Q 041113 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLV 375 (983)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV 375 (983)
++|++|+ +++++|+||| |+|+||||++|+ +.-||-|-||+||.|+.+||.|+.+ .++|++|++
T Consensus 512 -~kP~~~~-----------tSGGLGtMGf--GLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~ELat~rq--~~~PVKiLi 575 (675)
T KOG4166|consen 512 -KKPRQWL-----------TSGGLGTMGF--GLPAAIGASVANPDAIVIDIDGDASFIMTVQELATIRQ--ENLPVKILI 575 (675)
T ss_pred -cCcccee-----------ecCCcccccc--CcchhhcccccCcccEEEeccCCceeeeehHhhhhhhh--cCCceEEEE
Confidence 6666655 4799999999 999999999999 9999999999999999999999998 999999999
Q ss_pred EeCCCCccccCCCCCCCCCcccccc-ccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 376 INNHGGAIFSLLPIADRTEPRILDQ-YFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 376 ~NN~g~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
+||...||+-+|+. ..|+. +..+. .+|||.++|+|||+++.+|++.+||++.+++.+..+||+|+||.++.+
T Consensus 576 LNNeeqGMVtQWq~------lFYe~rysHThQ~nPnf~klA~AmGikalRV~K~edL~~k~keflsTkGPvLleV~v~~k 649 (675)
T KOG4166|consen 576 LNNEEQGMVTQWQD------LFYEARYSHTHQENPNFLKLAAAMGIKALRVTKKEDLREKIKEFLSTKGPVLLEVIVPHK 649 (675)
T ss_pred ecchhhhhHHHHHH------HHHHhhhccccccCccHHHHHHhcCCchheeehHHHHHHHHHHHhCCCCCeEEEEEccCc
Confidence 99999999866521 12222 22232 489999999999999999999999999999999999999999999986
Q ss_pred c
Q 041113 454 A 454 (983)
Q Consensus 454 ~ 454 (983)
+
T Consensus 650 e 650 (675)
T KOG4166|consen 650 E 650 (675)
T ss_pred c
Confidence 5
No 61
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=2.4e-52 Score=469.40 Aligned_cols=335 Identities=17% Similarity=0.201 Sum_probs=267.9
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g~~ 572 (983)
||++|+++.. .|. ++.++|||+|++|++||||+.+.. .. ..+...++ .+.|.|+|++
T Consensus 1 kI~~ie~~~~-----~~~-------------~~~vlV~v~td~G~~G~GE~~~~~-~~---~~~~~~i~~~l~p~l~G~d 58 (361)
T cd03322 1 KITAIEVIVT-----CPG-------------RNFVTLKITTDQGVTGLGDATLNG-RE---LAVKAYLREHLKPLLIGRD 58 (361)
T ss_pred CeEEEEEEEE-----CCC-------------CCEEEEEEEeCCCCeEEEecccCC-CH---HHHHHHHHHHHHHHcCCCC
Confidence 7999998544 221 346899999999999999986422 11 22333443 5899999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.+++.++..+ +.............|++|||+|||||+||.+|+|||+||||.. ++++++|++. .
T Consensus 59 ~~~~~~~~~~~-----~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~---------r~~v~~ya~~-~ 123 (361)
T cd03322 59 ANRIEDIWQYL-----YRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKS---------RDGIMVYSHA-S 123 (361)
T ss_pred hhHHHHHHHHH-----HHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCc---------cCeeeEEEeC-C
Confidence 98765544321 1111011122356789999999999999999999999999975 5789999765 3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..+++++.+++++++++||++||+|+ +++|+++|+++|+++.||+|||++||+++|+++++.|+++++.||
T Consensus 124 ~~~~~~~~~~a~~~~~~Gf~~~KiKv---------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~i 194 (361)
T cd03322 124 GRDIPELLEAVERHLAQGYRAIRVQL---------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWM 194 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeCH---------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEE
Confidence 45778899999999999999999997 779999999999999999999999999999999999999999999
Q ss_pred ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEE
Q 041113 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAV 809 (983)
Q Consensus 733 EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~ 809 (983)
|||++ +++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|++++
T Consensus 195 EeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~-----~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~ 269 (361)
T cd03322 195 EDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWD-----WQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTG 269 (361)
T ss_pred ECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeee
Confidence 99998 788999999999999999999998764 66666544 79999999999999999999999999999988
Q ss_pred eCCCC-chHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----cCCCCeeeEEec
Q 041113 810 VSAAF-ESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----NSCRGFVEASVA 884 (983)
Q Consensus 810 ~~~~~-es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~P~~pGlGv~~d 884 (983)
.|++. +++++.++++|+++++++.. + . . ......+..|++.+|+.+++ +|++||||+++|
T Consensus 270 ~h~~~~~s~i~~aa~~~laa~~~~~~--~---~------e----~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d 334 (361)
T cd03322 270 WHGPTDLSPVGMAAALHLDLWVPNFG--I---Q------E----YMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEID 334 (361)
T ss_pred ccCCCCcchHHHHHHHHHHhhcCcce--E---E------E----eccccchHHHhcCCCCeecCCeEeCCCCCccCceEC
Confidence 87776 69999999999999887531 0 0 0 00111122355566777763 999999999999
Q ss_pred chhhhhhhcccc
Q 041113 885 KATHILQNLQIN 896 (983)
Q Consensus 885 ~a~~~~~~~~~~ 896 (983)
++.++.+...
T Consensus 335 --~~~l~~~~~~ 344 (361)
T cd03322 335 --EKAAAKFPYV 344 (361)
T ss_pred --HHHHhhCCCC
Confidence 8888888654
No 62
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=3.2e-52 Score=471.59 Aligned_cols=341 Identities=23% Similarity=0.279 Sum_probs=279.0
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHH-HHhHhccCc
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRF-LLHFMTGAK 572 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~-~~~~l~g~~ 572 (983)
||++|+++.+++|++.| .+.. ..++.++|||+|++|++||||+.+.+. ...+...+.. ++|.|+|++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~----~~~~~~~V~v~~~~G~~G~GE~~~~~~----~~~~~~~l~~~~~p~l~G~~ 68 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAV----TWRNLVLVRVTTDDGITGWGEAYPGGR----PSAVAAAIEDLLAPLLIGRD 68 (357)
T ss_pred CeeEEEEEEEecCCccc----cccc----ccceEEEEEEEeCCCCEEEEeccCCCC----chHHHHHHHHHHHHHccCCC
Confidence 69999999999999988 2221 348899999999999999999987542 1223444555 899999999
Q ss_pred ccccccccccCchhhhhhhc-CCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeec
Q 041113 573 ISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALID 651 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~ 651 (983)
+.++..++..+ .... .....+..+++++|||+||||++||.+|+|||+||||.. +.+||+|+++.
T Consensus 69 ~~~~~~~~~~l-----~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~---------~~~v~~~~~~~ 134 (357)
T cd03316 69 PLDIERLWEKL-----YRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKV---------RDRVRVYASGG 134 (357)
T ss_pred hHHHHHHHHHH-----HHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCcc---------CCceeeEEecC
Confidence 88765554321 1111 111122357899999999999999999999999999974 46899999875
Q ss_pred CCC-CHHHHHHHHHHhhhcCCCEEEEeccCCCC-----hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcc
Q 041113 652 SNK-SPVEVASIATTLVEEGFTAIKLKVARRAD-----PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725 (983)
Q Consensus 652 ~~~-~~~~~~~~~~~~~~~G~~~~KiKig~~~~-----~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 725 (983)
... +++++.+++++++++||+.||+|+|.. + ++.|+++|+++|+++|+++.|++|+|++|+.++|+++++.|+
T Consensus 135 ~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~-~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 135 GYDDSPEELAEEAKRAVAEGFTAVKLKVGGP-DSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALE 213 (357)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC-CcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444 799999999999999999999999862 4 689999999999999999999999999999999999999999
Q ss_pred cCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHH
Q 041113 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQ 802 (983)
Q Consensus 726 ~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~ 802 (983)
++++.|+|||++ +++++++|++++++||++||++.++.+ +..+++. .+|++|+|++++||++++++++++|+
T Consensus 214 ~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~ 288 (357)
T cd03316 214 EYDLFWFEEPVPPDDLEGLARLRQATSVPIAAGENLYTRWE-----FRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAE 288 (357)
T ss_pred ccCCCeEcCCCCccCHHHHHHHHHhCCCCEEeccccccHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 999999999998 688899999999999999999998764 5566654 47999999999999999999999999
Q ss_pred HcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccc-hhcccccCCCCCceeec----cCCCC
Q 041113 803 RHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGT-YQWLKEDVTTDPISICH----NSCRG 877 (983)
Q Consensus 803 ~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~d~~~~p~~~~~----~P~~p 877 (983)
++|+++++|++.+ +|+.++++|++++++|... .++.. ...+..|+..+|+.+++ +|++|
T Consensus 289 ~~g~~~~~~~~~~-~i~~aa~~hla~a~~~~~~---------------~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 352 (357)
T cd03316 289 AHGVRVAPHGAGG-PIGLAASLHLAAALPNFGI---------------LEYHLDDLPLREDLFKNPPEIEDGYVTVPDRP 352 (357)
T ss_pred HcCCeEeccCCCC-HHHHHHHHHHHHhCcChhe---------------EEeecccchhhHhhccCCCeeeCCEEECCCCC
Confidence 9999999888766 9999999999999886421 01111 12234456677888873 99999
Q ss_pred eeeEE
Q 041113 878 FVEAS 882 (983)
Q Consensus 878 GlGv~ 882 (983)
|||++
T Consensus 353 GlGv~ 357 (357)
T cd03316 353 GLGVE 357 (357)
T ss_pred CCCCC
Confidence 99985
No 63
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=1.7e-52 Score=474.51 Aligned_cols=361 Identities=21% Similarity=0.274 Sum_probs=283.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
|+|.+|+.+.+.+|+..|+.++.... ..+..++|+|+|++|++||||+.+.......... .. ..+.+.++|++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~----~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~~-~~--~~~~~~l~g~d 73 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTV----RFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEA-EA--VLLAPLLIGRD 73 (372)
T ss_pred CCceeEEEEEeeeecCCccccccccc----ccceEEEEEEEECCCceeeccccCcccccchhhh-hH--HHHHHHhcCCC
Confidence 46788888889999999999887433 3488999999999999999999886432211111 11 15788999999
Q ss_pred ccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC
Q 041113 573 ISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS 652 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~ 652 (983)
+.++..++...+. .... ...+...+|++|||+|||||+||.+|+|||+||||.. +++|++|.+...
T Consensus 74 ~~~i~~~~~~~~~----~~~~-~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~---------r~~v~~y~~~~~ 139 (372)
T COG4948 74 PFDIERIWQKLYR----AGFA-RRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKV---------RDEVRAYASGGG 139 (372)
T ss_pred HHHHHHHHHHHHH----hccc-ccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCce---------eeeEEEEEecCC
Confidence 9887664432221 1111 1233456899999999999999999999999999987 578999988743
Q ss_pred -CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 -NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 -~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..+++...+.++.+.+.||+.+|+|+|.. +.+.|+++|+++|+++|++++|++|+|++||+++|+++++.|+++++.|
T Consensus 140 ~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~-~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l~~ 218 (372)
T COG4948 140 GEDPEEMAAEAARALVELGFKALKLKVGVG-DGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLEW 218 (372)
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEecCCCC-chHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCcce
Confidence 24566666777777779999999999983 6679999999999999999999999999999999999999999999999
Q ss_pred eecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 732 IEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
||||++ |.+++++|++.+.+|||+||++++..+ ++.+++.+ +|++|+|++++|||+++++++++|+.+++.+
T Consensus 219 iEeP~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~-----~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v 293 (372)
T COG4948 219 IEEPLPPDDLEGLRELRAATSTPIAAGESVYTRWD-----FRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMV 293 (372)
T ss_pred EECCCCccCHHHHHHHHhcCCCCEecCcccccHHH-----HHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCce
Confidence 999999 788999999988899999999999864 77777766 7999999999999999999999999888863
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee----ccCCCCeeeEEec
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSCRGFVEASVA 884 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~~pGlGv~~d 884 (983)
+++.++++++++++|++++.+|. .. ..... .+ ....+..+++.+|+.++ .+|++||||+++|
T Consensus 294 --~~h~~~~i~~aa~~hla~~~~~~--~~-------~~~~~--~~-~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~ 359 (372)
T COG4948 294 --GPHVEGPISLAAALHLAAALPNF--GD-------LEGPL--AL-ADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELD 359 (372)
T ss_pred --eccCchHHHHHHHHHHhhccchh--hh-------ccccc--cc-cccchhhhhccCCccccCCeEeCCCCCCCCcccc
Confidence 44455999999999999997642 11 10000 00 01112234677775554 3999999999999
Q ss_pred chhhhhhhcccc
Q 041113 885 KATHILQNLQIN 896 (983)
Q Consensus 885 ~a~~~~~~~~~~ 896 (983)
++.++++...
T Consensus 360 --~~~~~~~~~~ 369 (372)
T COG4948 360 --EDALAKYRVR 369 (372)
T ss_pred --HHHHHhcccc
Confidence 7777776643
No 64
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.3e-52 Score=469.59 Aligned_cols=349 Identities=16% Similarity=0.122 Sum_probs=269.4
Q ss_pred eEeEEEEEEEEeeCCCCCcc----ccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc
Q 041113 494 KICRMEYSLYRIQLCAPPTS----SYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT 569 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~----~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~ 569 (983)
||++|+++.+++|++.|+.+ +.++. ..++.++|||+|++|++||||+.+. . . ......+.+.|.|+
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~----~~~~~~~Vri~td~G~~G~G~~~~~-~--~---~~~~~~~~l~p~li 70 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPA----GTRKLALLTIETDEGAKGHAFGGRP-V--T---DPALVDRFLKKVLI 70 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCC----ccceEEEEEEEECCCCeEEEecCCc-h--h---HHHHHHHHHHHhcC
Confidence 69999999999999998765 34433 3488999999999999999996431 1 1 11223456899999
Q ss_pred cCcccccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEe
Q 041113 570 GAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICAL 649 (983)
Q Consensus 570 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~ 649 (983)
|+++.+++.++..+. .... +....|++||||||||++||.+|+|||+||||.+ ++|++|++
T Consensus 71 G~d~~~~~~~~~~~~-----~~~~----~~~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~----------~~v~~y~s 131 (368)
T cd03329 71 GQDPLDRERLWQDLW-----RLQR----GLTDRGLGLVDIALWDLAGKYLGLPVHRLLGGYR----------EKIPAYAS 131 (368)
T ss_pred CCChhHHHHHHHHHH-----HHhc----CcchhHHHHHHHHHHHHhhhhcCCcHHHHhhccc----------cceeEEEe
Confidence 999988766554221 1110 1234689999999999999999999999999954 68999987
Q ss_pred ecCC------CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhh
Q 041113 650 IDSN------KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 650 ~~~~------~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
+... .+++++.+.+++++++||++||+|+|...++++|++++++||+++|+++.|++|+|++||.++|+++++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~ 211 (368)
T cd03329 132 TMVGDDLEGLESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRA 211 (368)
T ss_pred cCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHH
Confidence 6322 3889999999999999999999998752236889999999999999999999999999999999999999
Q ss_pred cccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCccC-cCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHH
Q 041113 724 IKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDK-FQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 724 l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~-~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
|+++++.|+|||++ +++++++|++++++||++||++.+ +.+ +..+++.+ +|++|+|++++||+++++++++
T Consensus 212 l~~~~l~~iEeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~-----~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~ 286 (368)
T cd03329 212 LEELGFFWYEDPLREASISSYRWLAEKLDIPILGTEHSRGALES-----RADWVLAGATDFLRADVNLVGGITGAMKTAH 286 (368)
T ss_pred hhhcCCCeEeCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHH-----HHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 99999999999998 678899999999999999999998 653 55555544 7999999999999999999999
Q ss_pred HHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceee----ccCC
Q 041113 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSC 875 (983)
Q Consensus 800 ~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~ 875 (983)
+|+++|++++.|++ .++++|++++++|..+ .+.++..+. .....+.......+++.++ .+|+
T Consensus 287 ~a~~~gi~~~~h~~------~~a~~hlaaa~~~~~~-----~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~~p~ 352 (368)
T cd03329 287 LAEAFGLDVELHGN------GAANLHVIAAIRNTRY-----YERGLLHPS---QKYDVYAGYLSVLDDPVDSDGFVHVPK 352 (368)
T ss_pred HHHHcCCEEEEECh------HHHHHHHHhcCCCcee-----EEEeccccc---ccccccccchhccCCCcCCCCeEECCC
Confidence 99999999876553 5789999999986421 121110000 0000000001111223333 3899
Q ss_pred CCeeeEEecchhhhhhh
Q 041113 876 RGFVEASVAKATHILQN 892 (983)
Q Consensus 876 ~pGlGv~~d~a~~~~~~ 892 (983)
+|||||++| ++.+++
T Consensus 353 ~PGlGv~~d--~~~l~~ 367 (368)
T cd03329 353 GPGLGVEID--FDYIER 367 (368)
T ss_pred CCcCCccCC--HHHHhh
Confidence 999999999 666553
No 65
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=4.7e-52 Score=463.85 Aligned_cols=318 Identities=16% Similarity=0.183 Sum_probs=249.5
Q ss_pred EEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhc-CCCCCcchhhHHH
Q 041113 527 GFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTL-GIPACEIFPSVRC 605 (983)
Q Consensus 527 ~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~ 605 (983)
.++|||+||+|++||||+.+. ... .....+.+.|.|+|+++.+++.++..++ +.. .....+....|++
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~---~~~---~~~i~~~l~p~liG~dp~~~~~~~~~l~-----~~~~~~~~~~~~~~a~s 79 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG---PVA---CWIVDQHLARFLIGKDPSDIEKLWDQMY-----RATLAYGRKGIAMAAIS 79 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc---hHH---HHHHHHHHHHHhCCCCchHHHHHHHHHH-----hhccccCCccHHHhHHH
Confidence 468999999999999998532 111 1122346899999999988766654321 111 1112233457899
Q ss_pred HHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----
Q 041113 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR---- 681 (983)
Q Consensus 606 aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~---- 681 (983)
||||||||++||.+|+|||+||||+. +++|++|++.....+++++.+++++++++||++||+|+|..
T Consensus 80 aid~AlwDl~gK~~g~Pv~~LLGG~~---------r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~ 150 (341)
T cd03327 80 AVDLALWDLLGKIRGEPVYKLLGGRT---------RDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDG 150 (341)
T ss_pred HHHHHHHHhcccccCCCHHHHcCCCc---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcc
Confidence 99999999999999999999999975 57899998753346889999999999999999999999741
Q ss_pred -CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCC
Q 041113 682 -ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDET 758 (983)
Q Consensus 682 -~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs 758 (983)
.++++|+++|+++|+++|+++.||+|+|++|++++|+++++.|+++++.|||||++ +++++++|++++++||++||+
T Consensus 151 ~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~~~~~pIa~gE~ 230 (341)
T cd03327 151 HAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKATGIPISTGEH 230 (341)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCccccCCCCccCHHHHHHHHhcCCCCeEeccC
Confidence 13578999999999999999999999999999999999999999999999999998 788999999999999999999
Q ss_pred ccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhh
Q 041113 759 IDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL 837 (983)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~ 837 (983)
+++..+ +..+++. .+|++|+|++++||++++++++++|+++|++++. |. +.++++|++++++|+. .
T Consensus 231 ~~~~~~-----~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~-h~-----~~~a~~hlaaa~~~~~--~ 297 (341)
T cd03327 231 EYTVYG-----FKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVP-HA-----SQIYNYHFIMSEPNSP--F 297 (341)
T ss_pred ccCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecc-cc-----HHHHHHHHHHhCcCce--e
Confidence 998764 6666654 4799999999999999999999999999999664 43 3568999999988642 1
Q ss_pred hhhccccCCCCCccCccchhcccccCCCCCceee----ccCCCCeeeEEec
Q 041113 838 CKVMNRELCPPVAQGLGTYQWLKEDVTTDPISIC----HNSCRGFVEASVA 884 (983)
Q Consensus 838 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~----~~P~~pGlGv~~d 884 (983)
.++ ...... .....++ .+++.+|+.++ .+|++|||||++|
T Consensus 298 ---~e~--~~~~~~-~~~~~~~-~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 298 ---AEY--LPNSPD-EVGNPLF-YYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred ---EEe--cccccc-cccchhH-HHhccCCCcccCCeEECCCCCccCeecC
Confidence 111 000000 0011223 34555666665 3999999999986
No 66
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-52 Score=498.72 Aligned_cols=384 Identities=18% Similarity=0.151 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|++|++.|+++++|||||+||.|++....... ..+... .. ....++++.++++++
T Consensus 142 ~~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~---------------~~~~~~--~~----~~~~~~~~~i~~~~~ 200 (542)
T PRK08266 142 APALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVA---------------AAPPLR--PA----PPPAPDPDAIAAAAA 200 (542)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCHhHhhCccccc---------------cccccc--CC----CCCCCCHHHHHHHHH
Confidence 678999999999999999999999999533221100 000000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
+|++||||+|++|+|+. ++.+++.+|||++|+||++|+. | ||+||++||++ .|.. .++..+.+|
T Consensus 201 ~L~~AkrPvIv~G~g~~-~a~~~l~~lae~~g~pv~tt~~-~------kg~~~~~hp~~--~g~~------~~~~~~~~a 264 (542)
T PRK08266 201 LIAAAKNPMIFVGGGAA-GAGEEIRELAEMLQAPVVAFRS-G------RGIVSDRHPLG--LNFA------AAYELWPQT 264 (542)
T ss_pred HHHhCCCCEEEECCChh-hHHHHHHHHHHHHCCCEEEecc-c------cccCCCCCccc--cCCH------HHHHHHHhC
Confidence 99999999999999964 4577999999999999999996 6 89999999996 4543 233567899
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC--CCChhHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP--HRSSKWCSFLRALD 239 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~--~~~~~w~~~~~~~~ 239 (983)
|+||+||+++.+. +..|....+..++||||.|+..+++ +..++.|.+|++.+|++|.+.+.. .....|...+...+
T Consensus 265 Dlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 342 (542)
T PRK08266 265 DVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMRR-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELK 342 (542)
T ss_pred CEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhCC-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHH
Confidence 9999999999766 4444222223479999999999988 888999999999999999987753 12345655544333
Q ss_pred HHHHHHHHhhhcccCCCCHH-HHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEee
Q 041113 240 MMVASEISFQICADYSLTEP-HVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAG 318 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (983)
..+... ...+++. .+++.|++.+|++++++.|+|+ +.+|...++++ ..|++|+ .++
T Consensus 343 ~~~~~~-------~~~~~~~~~~~~~l~~~lp~d~ivv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~ 399 (542)
T PRK08266 343 AAARQR-------IQAVQPQASYLRAIREALPDDGIFVDELSQ----VGFASWFAFPV-YAPRTFV-----------TCG 399 (542)
T ss_pred Hhhhhc-------cccCCHHHHHHHHHHHhcCCCcEEEeCCcH----HHHHHHHhccc-CCCCcEE-----------eCC
Confidence 221111 1235665 4799999999999999999888 55555544443 3444443 356
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
++|+||| ++|+|||++++. +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ..
T Consensus 400 ~~GsmG~--~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~--~~lpv~ivv~NN~~y~~~~~~~~~-----~~ 470 (542)
T PRK08266 400 YQGTLGY--GFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQ--HNIGVVTVVFNNNAYGNVRRDQKR-----RF 470 (542)
T ss_pred CCccccc--HHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHH--hCCCeEEEEEeCCcchHHHHHHHH-----hc
Confidence 7899999 999999999999 8999999999999999999999999 999999999999999998653211 00
Q ss_pred cccccccC-CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 398 LDQYFYTT-HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 398 ~~~~~~~~-~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
..+++++. +++||.++|++||+++.+|++.+||+++|+++++.++|+||||.|++.+..
T Consensus 471 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 471 GGRVVASDLVNPDFVKLAESFGVAAFRVDSPEELRAALEAALAHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred CCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence 12223332 468999999999999999999999999999999889999999999887644
No 67
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=9.9e-51 Score=461.29 Aligned_cols=355 Identities=15% Similarity=0.163 Sum_probs=271.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCc
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAK 572 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~ 572 (983)
..||++++.++... ..+..+..+.+ +. ..+.++|+|+||+|++||||+.+ .++ +...++.++|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~iV~v~Td~Gi~G~GEa~~----~~~---~~~~l~~lap~LiG~d 72 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAH--AP-FFTRNIVILTDSSGNTGVGEVPG----GEK---IRATLEDARPLVVGKP 72 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccC--CC-cceEEEEEEEECCCCeEEEeCCC----cHH---HHHHHHHHHHHhcCCC
Confidence 35777777766432 22344444444 22 48899999999999999999854 122 2334567899999999
Q ss_pred ccccccccccCchhhhhh-hcCCCCC-----cchhhHHHHHHHHHHHHHHHHcCCChhhhcC-CCCccccccccccceeE
Q 041113 573 ISYFLPLLKGSFSSWIWS-TLGIPAC-----EIFPSVRCGLEMAILNAIAVKHGSSFLNILY-PLTEIDEEISKRSTSIK 645 (983)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG-g~~~~~~~~~~~~~~i~ 645 (983)
+.+++.++..+.. ..+. ..+.... ....+|++|||||||||+||.+|+|||+||| |.. +++|+
T Consensus 73 p~~~e~i~~~m~~-~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~---------r~~vp 142 (441)
T TIGR03247 73 LGEYQNVLNDVRA-TFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQ---------RDEVE 142 (441)
T ss_pred HHHHHHHHHHHHH-HhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCc---------cceEE
Confidence 9887766543211 1100 0000000 1235799999999999999999999999999 544 46788
Q ss_pred EEEeecC----------------------------CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHH
Q 041113 646 ICALIDS----------------------------NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRK 696 (983)
Q Consensus 646 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~ 696 (983)
+|++..+ ..++++++++++++++ +||++||+|+|.. ++++|+++|+++|+
T Consensus 143 ~y~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~-~~~~Di~~v~avRe 221 (441)
T TIGR03247 143 MLGYLFFIGDRKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVL-RGEEEIEAVTALAK 221 (441)
T ss_pred EeeeeeeccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCC-ChHHHHHHHHHHHH
Confidence 8864210 1368889999998876 5999999999862 56899999999999
Q ss_pred HcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--C----hHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 697 KVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--N----EEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 697 ~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
++ +++.|++|+|++||.++|++++++|+++ +.|||||++ + ++++++|++++++||++||++++..+ +
T Consensus 222 a~-~d~~L~vDAN~~wt~~~Ai~~~~~Le~~-~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~-----~ 294 (441)
T TIGR03247 222 RF-PQARITLDPNGAWSLDEAIALCKDLKGV-LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQ-----M 294 (441)
T ss_pred hC-CCCeEEEECCCCCCHHHHHHHHHHhhhh-hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHH-----H
Confidence 98 8999999999999999999999999999 999999998 5 67899999999999999999998753 6
Q ss_pred HhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCC
Q 041113 771 EKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPV 849 (983)
Q Consensus 771 ~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~ 849 (983)
+.+++.+ +|++++|+. +|||++++|++++|+++|++++.+++++++|+.++++|++++++|..
T Consensus 295 ~~li~~~avdi~~~d~~-~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~--------------- 358 (441)
T TIGR03247 295 GHALQLQAVDIPLADPH-FWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI--------------- 358 (441)
T ss_pred HHHHHhCCCCEEeccCC-cchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc---------------
Confidence 6666554 699999995 67899999999999999999877666789999999999999887420
Q ss_pred ccCccchhccc--ccCCCCCceeec----cCCCCeeeEEecchhhhhhhccc
Q 041113 850 AQGLGTYQWLK--EDVTTDPISICH----NSCRGFVEASVAKATHILQNLQI 895 (983)
Q Consensus 850 ~~g~~~~~~~~--~d~~~~p~~~~~----~P~~pGlGv~~d~a~~~~~~~~~ 895 (983)
.++++..++. ++++.+|+.+++ +|++|||||++| ++.++++-.
T Consensus 359 -~~~d~~~~~~~~~~l~~~p~~~~dG~i~vp~~PGLGve~d--~~~l~~~~~ 407 (441)
T TIGR03247 359 -TAIDTHWIWQDGQRLTKEPLEIKGGKIQVPDKPGLGVEID--MDAVDAAHE 407 (441)
T ss_pred -cccCcchhhhcccccccCCceeECCEEecCCCCCCCceeC--HHHHHHHHH
Confidence 0112221211 356677888773 999999999999 887777643
No 68
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.4e-51 Score=489.80 Aligned_cols=390 Identities=16% Similarity=0.144 Sum_probs=288.8
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|++|++.|.++|||||||+||.|.+..+.... ..+.... ... ..+.++++.+++++
T Consensus 154 ~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~---------------~~~~~~~--~~~--~~~~~~~~~~~~~~ 214 (569)
T PRK08327 154 QIGEVVARAIQIAMSEPKGPVYLTLPREVLAEEVPEV---------------KADAGRQ--MAP--APPAPDPEDIARAA 214 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECcHHHHhhhcccc---------------ccCcccc--CCC--CCCCCCHHHHHHHH
Confidence 3678999999999999999999999998533222100 0000000 000 11235677899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|++||||+|++|+|++ .++.+++.+|||++++||++|++ | ||+||++||++ +|.+ ++..++
T Consensus 215 ~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-g------kg~~~~~hp~~--~G~~-------~~~~~~ 278 (569)
T PRK08327 215 EMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAG-E------VVNYPSDHPLH--LGPD-------PRADLA 278 (569)
T ss_pred HHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCC-C------ceeCCCCCccc--cccc-------cchhhh
Confidence 999999999999999987 45678999999999999999997 6 89999999996 4543 456778
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCC---CCCCeeEEEEcCHHHHHHHHHhccCCCCCh-------
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHD---PSHSVTHRIQSTIVQFVDFLLKVQVPHRSS------- 229 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~---~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~------- 229 (983)
+|||||++|+++....+. + ...+..++||||.|+..++ ++++.++.|++|++.++++|++.+......
T Consensus 279 ~aDlvl~lG~~l~~~~~~-~-~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 356 (569)
T PRK08327 279 EADLVLVVDSDVPWIPKK-I-RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARR 356 (569)
T ss_pred hCCEEEEeCCCCCCcccc-c-cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhh
Confidence 999999999998644332 1 1112347999999998875 478899999999999999999877532211
Q ss_pred ---hHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCccccccccccccc
Q 041113 230 ---KWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306 (983)
Q Consensus 230 ---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 306 (983)
.|.....+.+........ ....+.++++.+++++|++.+|++++++.+.+ |..+++++ .+|++|+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~~~~vv~~~~--------~~~~~~~~-~~~~~~~-- 424 (569)
T PRK08327 357 RRAAVRELRIRQEAAKRAEIE-RLKDRGPITPAYLSYCLGEVADEYDAIVTEYP--------FVPRQARL-NKPGSYF-- 424 (569)
T ss_pred hHHHHHHHHHHhhhhhhhhhh-ccCCCCCcCHHHHHHHHHHhcCccceEEeccH--------HHHHhcCc-cCCCCee--
Confidence 233222221111111110 01234579999999999999999998885543 33444443 4444443
Q ss_pred CCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccch--HHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNG--LAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 307 ~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~e--L~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
.++++|+||| |+|+|+|+++|+ +++||+|+|||||+|+++| |+|++| |++|+++||+||++|++
T Consensus 425 ---------~~~~~gsmG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~--~~l~~~ivv~NN~~yg~ 491 (569)
T PRK08327 425 ---------GDGSAGGLGW--ALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAER--YGLPVLVVVFNNGGWLA 491 (569)
T ss_pred ---------eCCCCCCCCc--chHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHH--hCCCEEEEEEeCccccc
Confidence 3678999999 999999999999 9999999999999999987 899999 99999999999999999
Q ss_pred ccCCCCCCCCC--ccccccccccC--CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc----CCCEEEEEEcCc
Q 041113 384 FSLLPIADRTE--PRILDQYFYTT--HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL----GTDRVIEVESCI 452 (983)
Q Consensus 384 ~~~~~~~~~~~--~~~~~~~~~~~--~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~----~~p~lIeV~~~~ 452 (983)
++......... .........+. +++||.++|++||+++++|++.+||+++|+++++. ++|+||||.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 492 VKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred chhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEEEEccC
Confidence 87542110000 00001111221 56899999999999999999999999999999875 789999999975
No 69
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=6.3e-51 Score=451.03 Aligned_cols=317 Identities=20% Similarity=0.246 Sum_probs=262.7
Q ss_pred EEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCc--C-cCcccHHHHHHHHHH-HHhHhccCccccc
Q 041113 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--E-IHKENLLDAEEQLRF-LLHFMTGAKISYF 576 (983)
Q Consensus 501 ~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~--~-~~~~~~~~~~~~l~~-~~~~l~g~~~~~~ 576 (983)
+.+++|++.|+.++.+++ ..++.++|||+|++|++||||+.+. + ++.++...+...++. +.|.++| ++.+.
T Consensus 1 ~~~~lp~~~p~~~a~~~~----~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~ 75 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTL----NHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHP 75 (324)
T ss_pred CeecccCcCCEEcCCeeE----ecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCH
Confidence 357899999999988764 3489999999999999999999864 2 345666555555554 6788998 77665
Q ss_pred ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCH
Q 041113 577 LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSP 656 (983)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 656 (983)
..++.. +... ...+++++||||||||++||..|+|||+||||.+ ++|++|+++ +..++
T Consensus 76 ~~~~~~-----~~~~------~~~~~a~said~AlwDl~gk~~g~Pl~~llGg~~----------~~i~~y~~~-~~~~~ 133 (324)
T TIGR01928 76 SEALEL-----VRSL------KGTPMAKAGLEMALWDMYHKLPSFSLAYGQGKLR----------DKAPAGAVS-GLAND 133 (324)
T ss_pred HHHHHH-----HHHc------cCCcHHHHHHHHHHHHHHHhhhCCcHHHHhCCCC----------CeEEEeEEc-CCCCH
Confidence 444321 1111 1245799999999999999999999999999853 789999886 34678
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCC
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV 736 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~ 736 (983)
+++.+++++++++||++||+|++ ++.|+++++++|+++ +++.||+|+|++|+.+++ ++++.|+++++.|||||+
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiKv~----~~~d~~~v~~vr~~~-~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~~~iEeP~ 207 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLKIT----PQIMHQLVKLRRLRF-PQIPLVIDANESYDLQDF-PRLKELDRYQLLYIEEPF 207 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeC----CchhHHHHHHHHHhC-CCCcEEEECCCCCCHHHH-HHHHHHhhCCCcEEECCC
Confidence 99999999999999999999996 357899999999999 799999999999999986 568999999999999999
Q ss_pred C--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC
Q 041113 737 Q--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA 813 (983)
Q Consensus 737 ~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~ 813 (983)
+ +++++++|++++++||++||++++..+ +..+++.+ +|++|+|++++||++++++++++|+++|+++++||+
T Consensus 208 ~~~~~~~~~~l~~~~~~pia~dEs~~~~~~-----~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~ 282 (324)
T TIGR01928 208 KIDDLSMLDELAKGTITPICLDESITSLDD-----ARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGM 282 (324)
T ss_pred ChhHHHHHHHHHhhcCCCEeeCCCcCCHHH-----HHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcce
Confidence 8 688899999999999999999999764 66666554 699999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCce
Q 041113 814 FESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPIS 869 (983)
Q Consensus 814 ~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~ 869 (983)
+|++|+.++++|+|++.++. + +. ..+++..||..|++.+|++
T Consensus 283 ~es~i~~aa~~hla~~~~~~-----------~-~~--~~~~~~~~~~~d~~~~~~~ 324 (324)
T TIGR01928 283 LETGISRAFNVALASLGGND-----------Y-PG--DVSPSGYYFDQDIVAPSIR 324 (324)
T ss_pred EcccHHHHHHHHHHhCCCCC-----------C-CC--CCCCccccccccccCCCCC
Confidence 99999999999999886531 0 11 1145667888898887763
No 70
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=2.1e-51 Score=487.85 Aligned_cols=382 Identities=17% Similarity=0.167 Sum_probs=293.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
++++|+||++.|+++|+|||||+||.|++..+... .+ ... .. +...++++.++++++
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP~d~~~~~~~~-----------------~~-~~~--~~---~~~~~~~~~~~~~~~ 201 (530)
T PRK07092 145 VPAAIARAYHIAMQPPRGPVFVSIPYDDWDQPAEP-----------------LP-ART--VS---SAVRPDPAALARLGD 201 (530)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEccHHHhhCcccc-----------------cc-cCC--CC---CCCCCCHHHHHHHHH
Confidence 67899999999999999999999999964333210 00 000 00 122456678999999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~ 160 (983)
+|.+||||+|++|.|++ .++.+++.+|||++|+||++|++++ ||+||++||++ +|.++.. .......+++
T Consensus 202 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~------kg~~~~~hp~~--~G~~g~~-~~~~~~~l~~ 272 (530)
T PRK07092 202 ALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSG------RCSFPEDHPLF--AGFLPAS-REKISALLDG 272 (530)
T ss_pred HHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCC------cCcCCCCCccc--cCcCCcc-HHHHHHHHhh
Confidence 99999999999999987 4566799999999999999998766 79999999996 6777632 2344567789
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
||+||++|+++.+..+.+|...+.+ .++||||.|+..++. ++.++.|.+|++.++++|++.+.......+.. +
T Consensus 273 aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~-----~ 346 (530)
T PRK07092 273 HDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAW-APMGDAIVGDIRLALRDLLALLPPSARPAPPA-----R 346 (530)
T ss_pred CCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcC-CCCCCcccCCHHHHHHHHHHhhccccccchhh-----h
Confidence 9999999998655544334333333 468999999988766 45788999999999999998775322211110 0
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.. .........++++..+++.|++.+|++++++.|+|+ +..|..+++++ ..|++|+ .+.
T Consensus 347 ~~----~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~------------~~~ 405 (530)
T PRK07092 347 PM----PPPAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPS----TRPAMQEHLPM-RRQGSFY------------TMA 405 (530)
T ss_pred hc----cccccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCc----cHHHHHHhcCc-CCCCceE------------ccC
Confidence 00 000011245699999999999999999999999998 55566665553 4444443 234
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
+|+||+ ++|+|+|+++|. +++|||++|||+|+|+++||+|+++ |++|+++||+||++|++++..+... ..
T Consensus 406 ~g~mG~--~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~--~~lp~~~vv~NN~~~~~~~~~~~~~-----~~ 476 (530)
T PRK07092 406 SGGLGY--GLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQ--LKLPVTFVILNNGRYGALRWFAPVF-----GV 476 (530)
T ss_pred CCcccc--hHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHhh-----CC
Confidence 599999 999999999999 8999999999999999999999999 9999999999999999986532110 00
Q ss_pred ccc-cccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 399 DQY-FYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 399 ~~~-~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
.+. ....+++||.++|++||+++.+|++.+||.++|+++++.++|.||||.+|
T Consensus 477 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~al~~a~~~~~p~liev~~d 530 (530)
T PRK07092 477 RDVPGLDLPGLDFVALARGYGCEAVRVSDAAELADALARALAADGPVLVEVEVA 530 (530)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 111 11225799999999999999999999999999999998899999999985
No 71
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=2.4e-49 Score=437.83 Aligned_cols=286 Identities=18% Similarity=0.204 Sum_probs=243.1
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhc-cCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMT-GAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~-g~~~~ 574 (983)
++|+++.+++|++.||.++.++. ..++.++|+|+ ++|.+||||+.|.+.++++...+...+..+.|.++ +.+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~----~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 76 (321)
T PRK15129 2 RTVKVYEEAWPLHTPFVIARGSR----SEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLTRE 76 (321)
T ss_pred ceEEEEEEEeeccCCEEccCceE----EeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCCCHH
Confidence 47999999999999999998865 45899999998 68999999999876556777766677777888876 32111
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
.+...+ ..+++++||||||||++||..|+|||+||||.. ++++++|+++. ..
T Consensus 77 ------------~~~~~~------~~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~---------~~~i~~~~~~~-~~ 128 (321)
T PRK15129 77 ------------ALQKLL------PAGAARNAVDCALWDLAARQQQQSLAQLIGITL---------PETVTTAQTVV-IG 128 (321)
T ss_pred ------------HHHhhc------cChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCceeEEEEec-CC
Confidence 111111 136799999999999999999999999999975 46799988873 46
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeec
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
+++++.+++++++++||++||+|+|. +.|+++|+++|+++ +++.||+|||++||.++|+++++.|+++++.||||
T Consensus 129 ~~~~~~~~~~~~~~~G~~~~KlKv~~----~~d~~~v~avr~~~-~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEq 203 (321)
T PRK15129 129 TPEQMANSASALWQAGAKLLKVKLDN----HLISERMVAIRSAV-PDATLIVDANESWRAEGLAARCQLLADLGVAMLEQ 203 (321)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC----chHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHHHhcCceEEEC
Confidence 88999999999999999999999963 46899999999999 58999999999999999999999999999999999
Q ss_pred CCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 735 PVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 735 P~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
|++ +.+++++++ +++||++|||+++..| +..+. ..+|++|+|++++||++++++++++|+++|+++++|+
T Consensus 204 P~~~~~~~~l~~~~--~~~pia~dEs~~~~~d-----~~~~~-~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~ 275 (321)
T PRK15129 204 PLPAQDDAALENFI--HPLPICADESCHTRSS-----LKALK-GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGC 275 (321)
T ss_pred CCCCCcHHHHHHhc--cCCCEecCCCCCCHHH-----HHHHH-hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEec
Confidence 998 444555443 5799999999999764 44443 4579999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 041113 813 AFESGLGLSAYIIFS 827 (983)
Q Consensus 813 ~~es~ig~~a~~~la 827 (983)
|+||+++.++++|++
T Consensus 276 ~~es~i~~~a~~~l~ 290 (321)
T PRK15129 276 MLCTSRAISAALPLV 290 (321)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999999994
No 72
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=2.8e-49 Score=444.40 Aligned_cols=315 Identities=17% Similarity=0.139 Sum_probs=238.1
Q ss_pred eeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccccccccCchhhhhhhcCCCCCcchhhH
Q 041113 524 CREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSV 603 (983)
Q Consensus 524 ~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 603 (983)
.++.++|||+|++|++||||+.+.. .. .....+.+.|.|+|+++.+++.++..++.. .......+....|
T Consensus 55 ~~~~vlVrI~td~G~~G~Ge~~~~~----~~--~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~----~~~~g~~g~~~~A 124 (394)
T PRK15440 55 VLGTLVVEVEAENGQVGFAVSTAGE----MG--AFIVEKHLNRFIEGKCVSDIELIWDQMLNA----TLYYGRKGLVMNT 124 (394)
T ss_pred ccceEEEEEEECCCCEEEEeCCCcH----HH--HHHHHHHHHHHcCCCChhhHHHHHHHHHhh----ccccCCccHhhhH
Confidence 3678999999999999999975321 11 122234689999999999877665433211 0001122334569
Q ss_pred HHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--
Q 041113 604 RCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-- 681 (983)
Q Consensus 604 ~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-- 681 (983)
++|||+|||||+||.+|+|||+||||.. +++|++|++. ..++ . + .++||++||+|++..
T Consensus 125 ~saIDiALwDl~gK~~g~Pv~~LLGG~~---------r~~v~~y~~~---~~~~-~---a---~~~Gf~~~Kik~~~g~~ 185 (394)
T PRK15440 125 ISCVDLALWDLLGKVRGLPVYKLLGGAV---------RDELQFYATG---ARPD-L---A---KEMGFIGGKMPLHHGPA 185 (394)
T ss_pred HHHHHHHHHHHhhhHcCCcHHHHcCCCC---------CCeeEEEecC---CChH-H---H---HhCCCCEEEEcCCcCcc
Confidence 9999999999999999999999999975 5789998753 2232 1 1 257999999999531
Q ss_pred ---CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcC--CcEE
Q 041113 682 ---ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESG--LPVA 754 (983)
Q Consensus 682 ---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa 754 (983)
.++++|+++|+++|+++|+++.||+|+|++||+++|++++++|+++++.|||||++ |++++++|+++++ +||+
T Consensus 186 ~g~~~~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiEEPl~~~d~~~~~~L~~~~~~~i~ia 265 (394)
T PRK15440 186 DGDAGLRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIEECLPPDDYWGYRELKRNAPAGMMVT 265 (394)
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcceeCCCCcccHHHHHHHHHhCCCCCcee
Confidence 13588999999999999999999999999999999999999999999999999998 7889999999866 8899
Q ss_pred eCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhh
Q 041113 755 LDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~ 833 (983)
+||+++++.+ ++.+++.+ +|++|+|++++||||+++|++++|+++|++++ +|. +.++++|++++.+|+
T Consensus 266 ~gE~~~~~~~-----~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~-pH~-----~~~~~~hl~aa~~n~ 334 (394)
T PRK15440 266 SGEHEATLQG-----FRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVV-PHG-----SSVYSHHFVITRTNS 334 (394)
T ss_pred cCCCccCHHH-----HHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeec-ccC-----HHHHHHHHHhhCcCc
Confidence 9999998764 66666655 79999999999999999999999999999965 553 246889999999974
Q ss_pred hhhhhhhccccC-CCCCccCccc-hhcccccCCCCCceee----ccC--CCCeeeEEecchhhhh
Q 041113 834 NAYLCKVMNREL-CPPVAQGLGT-YQWLKEDVTTDPISIC----HNS--CRGFVEASVAKATHIL 890 (983)
Q Consensus 834 ~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~d~~~~p~~~~----~~P--~~pGlGv~~d~a~~~~ 890 (983)
.+ .++.. .+. .+. ..++..+++.+ +.++ .+| ++||||+++| ++.+
T Consensus 335 ~~-----~E~~~~~~~----~~~~~~~~~~~~~~~-~~~~~G~l~vp~~~~PGlGveld--~~~~ 387 (394)
T PRK15440 335 PF-----SEFLMMSPD----ADTVVPQFDPILLDE-PVPVNGRIHKSVLDKPGFGVELN--RDCN 387 (394)
T ss_pred ee-----EEecccCcc----ccccccchhhhhcCC-CeeeCCEEECCCCCCCccCcccC--HHHH
Confidence 21 11100 000 000 12223334333 3333 399 9999999999 5554
No 73
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.2e-48 Score=433.79 Aligned_cols=300 Identities=24% Similarity=0.297 Sum_probs=259.5
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCc-CcccHHHHHHHHHHHHhHhccCcccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI-HKENLLDAEEQLRFLLHFMTGAKISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~-~~~~~~~~~~~l~~~~~~l~g~~~~~ 575 (983)
.|+++.+++|++.|+.++.++. ..++.++|||+|+ |++||||+.|.++ ++++...+...++.+.|.++|+++.
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~----~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~- 74 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSR----TEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR- 74 (316)
T ss_pred CeEEEEEEeeccccEEeeCceE----EeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-
Confidence 3788899999999999998765 3488999999999 9999999988754 4555555666677789999999887
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKS 655 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~ 655 (983)
+..++..+ .... ...+++++|||+||||++||.+|+|||+||||.. +.++++|+++. ..+
T Consensus 75 ~~~~~~~l-----~~~~-----~~~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~---------~~~~~~~~~~~-~~~ 134 (316)
T cd03319 75 LEKLLEAL-----QELL-----PGNGAARAAVDIALWDLEAKLLGLPLYQLWGGGA---------PRPLETDYTIS-IDT 134 (316)
T ss_pred HHHHHHHH-----HHhc-----cCChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCC---------CCCceeEEEEe-CCC
Confidence 65544321 1111 1146799999999999999999999999976655 46788887764 467
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecC
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP 735 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP 735 (983)
++++.+.+++++++||++||+|+|. +++.|+++|+++|+++| ++.|++|+|++|+.++|+++++.|+++++.|||||
T Consensus 135 ~~~~~~~~~~~~~~Gf~~iKik~g~--~~~~d~~~v~~lr~~~g-~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEeP 211 (316)
T cd03319 135 PEAMAAAAKKAAKRGFPLLKIKLGG--DLEDDIERIRAIREAAP-DARLRVDANQGWTPEEAVELLRELAELGVELIEQP 211 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCC--ChhhHHHHHHHHHHhCC-CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC
Confidence 8999999999999999999999986 67899999999999999 99999999999999999999999999999999999
Q ss_pred CC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 736 VQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 736 ~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
++ +++++++|++.+++||++||++.+..+ ++.+++ .++|++|+|++++||++++++++++|+++|+++++|+
T Consensus 212 ~~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~-----~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~ 286 (316)
T cd03319 212 VPAGDDDGLAYLRDKSPLPIMADESCFSAAD-----AARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGC 286 (316)
T ss_pred CCCCCHHHHHHHHhcCCCCEEEeCCCCCHHH-----HHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 98 788999999999999999999998753 666665 4579999999999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHhhc
Q 041113 813 AFESGLGLSAYIIFSSYL 830 (983)
Q Consensus 813 ~~es~ig~~a~~~laa~~ 830 (983)
+++++|++++++|+++++
T Consensus 287 ~~~~~i~~~a~~hl~a~~ 304 (316)
T cd03319 287 MVESSLSIAAAAHLAAAK 304 (316)
T ss_pred chhhHHHHHHHHHHHhhc
Confidence 899999999999999985
No 74
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=6.7e-48 Score=416.80 Aligned_cols=254 Identities=28% Similarity=0.397 Sum_probs=232.7
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFL 577 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~ 577 (983)
|+++.+++||+.||.++.++. ..++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~----~~~~~~~v~l~~~~G~~G~GE~~-------------------------------- 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTL----TTADHVLLRLHTDDGLVGWAEAT-------------------------------- 44 (265)
T ss_pred CEEEEEeecccCceEecceeE----eccceEEEEEEECCCCEEEeccH--------------------------------
Confidence 578899999999999988764 34899999999999999999986
Q ss_pred cccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHH
Q 041113 578 PLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPV 657 (983)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 657 (983)
++|||+||||+.||.+|+||++|+|+.+ ++||+|+++. ..+++
T Consensus 45 --------------------------~~aid~Al~Dl~gk~~g~pv~~llG~~~----------~~i~~~~~~~-~~~~~ 87 (265)
T cd03315 45 --------------------------KAAVDMALWDLWGKRLGVPVYLLLGGYR----------DRVRVAHMLG-LGEPA 87 (265)
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCcHHHHcCCCC----------CceEEEEEec-CCCHH
Confidence 3789999999999999999999999854 6799998874 35789
Q ss_pred HHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC
Q 041113 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ 737 (983)
Q Consensus 658 ~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 737 (983)
++.+++++++++||++||+|+|. ++++|+++|++||+++|+++.|++|+|++||.++|+++++.|+++++.|||||++
T Consensus 88 ~~~~~~~~~~~~G~~~~KiKvg~--~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 165 (265)
T cd03315 88 EVAEEARRALEAGFRTFKLKVGR--DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLP 165 (265)
T ss_pred HHHHHHHHHHHCCCCEEEEecCC--CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCC
Confidence 99999999999999999999996 6789999999999999999999999999999999999999999999999999998
Q ss_pred --ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 --NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 --~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+++++++|++++++||++||++.+..+ +..+++ ..+|++++|++++||++++++++++|+++|+++++|+++
T Consensus 166 ~~d~~~~~~l~~~~~ipia~dE~~~~~~~-----~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 166 ADDLEGRAALARATDTPIMADESAFTPHD-----AFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred cccHHHHHHHHhhCCCCEEECCCCCCHHH-----HHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 688999999999999999999998753 555554 457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhch
Q 041113 815 ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 815 es~ig~~a~~~laa~~~ 831 (983)
+|+|++++++|++++++
T Consensus 241 ~s~i~~~a~~hlaa~~~ 257 (265)
T cd03315 241 ESGLGTLANAHLAAALR 257 (265)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 99999999999999987
No 75
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-49 Score=464.25 Aligned_cols=365 Identities=12% Similarity=0.069 Sum_probs=264.5
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
+++++|+||++.|.++|+|||||+||.|.+....... ..+.... +.+.++++.+++++
T Consensus 138 ~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~~~-------~~~~~~~~~i~~~~ 195 (518)
T PRK12474 138 AVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYA---------------AQPLRGI-------GPAPVAAETVERIA 195 (518)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCC---------------cCCCCCC-------CCCCCCHHHHHHHH
Confidence 3788999999999999999999999999643221000 0000000 01235667899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEecccc-----Cccchhhhhhhhh-hccccccccchhhhccCc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILS-----GLRLRKLLASFLE-TEQNILFLDHLDHALLSE 153 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~s-----g~~~~~~kg~~~~-~hp~~~~~g~~g~~~~~~ 153 (983)
++|++||||+|++|+|+. .++.+++++|||++|+||++|..+ | ||+||+ +||++ . ..
T Consensus 196 ~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~g------kg~~~~~~~~~~--~--------~~ 259 (518)
T PRK12474 196 ALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERG------AGRVPIERIPYF--H--------EQ 259 (518)
T ss_pred HHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCC------CCCCCCcccccc--h--------HH
Confidence 999999999999999986 456789999999999999976432 5 899995 55663 1 12
Q ss_pred cccccCCCCEEEEeCCccccHH-HH-H-HHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCCh
Q 041113 154 SVKDWIQFDVIIQIGSRITSKR-IS-Q-MIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSS 229 (983)
Q Consensus 154 ~~~~~~~aDlvl~iG~~~~~~~-~~-~-~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~ 229 (983)
....+++|||||++|++++... +. . +...+. +.++++++.. .+|++.++++|.+.+....
T Consensus 260 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~d~~~~l~~L~~~l~~~~-- 323 (518)
T PRK12474 260 ITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP--------------DEDLAQALQDLADAVDAPA-- 323 (518)
T ss_pred HHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC--------------CcCHHHHHHHHHHhccccc--
Confidence 2356789999999999963111 00 0 111111 2346666531 1699999999988664311
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCC
Q 041113 230 KWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF 309 (983)
Q Consensus 230 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 309 (983)
.+.... ...... ....++++.+++++|++.++++++++.|.|+ +..|...+++. .+|++|+
T Consensus 324 ~~~~~~-------~~~~~~--~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~----~~~~~~~~~~~-~~p~~~~----- 384 (518)
T PRK12474 324 EPAART-------PLALPA--LPKGALNSLGVAQLIAHRTPDQAIYADEALT----SGLFFDMSYDR-ARPHTHL----- 384 (518)
T ss_pred cccccc-------cccccC--CCCCCcCHHHHHHHHHHHCCCCeEEEECCCc----CHHHHHHhhcc-cCCCCEE-----
Confidence 111100 000000 1235699999999999999999999999998 56666666553 4454443
Q ss_pred CCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 310 PHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 310 ~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
.+++|+||| |+|+|||+++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|+++++..
T Consensus 385 -------~~~~gsmG~--glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r--~~lpv~iiV~NN~~y~~i~~~~ 453 (518)
T PRK12474 385 -------PLTGGSIGQ--GLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMAR--ENLDVTVVIFANRSYAILNGEL 453 (518)
T ss_pred -------ccCCCccCc--cHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHH--HCCCcEEEEEcCCcchHHHHHH
Confidence 234499999 999999999999 9999999999999999999999999 9999999999999999987532
Q ss_pred CCCCCCccccc---cccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 389 IADRTEPRILD---QYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 389 ~~~~~~~~~~~---~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
+.... ..... .... ..+++||.++|++||+++.+|++.+||.++|+++++.++|+||||.+
T Consensus 454 ~~~~~-~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~~~~p~liev~~ 518 (518)
T PRK12474 454 QRVGA-QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATTAEEFSAQYAAAMAQRGPRLIEAMI 518 (518)
T ss_pred HhhcC-CCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 11000 00000 0111 12458999999999999999999999999999999999999999975
No 76
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-48 Score=461.87 Aligned_cols=371 Identities=15% Similarity=0.078 Sum_probs=264.2
Q ss_pred CHHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 1 ~i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
++++.|+||++.|+++|||||||+||.|.+....... ..+.. . . +...++++.+++++
T Consensus 134 ~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~---------------~~~~~---~-~---~~~~~~~~~v~~~~ 191 (514)
T PRK07586 134 DVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPP---------------APPPP---A-P---APAAVDPAAVEAAA 191 (514)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccc---------------cccCC---C-C---CCCCCCHHHHHHHH
Confidence 3688999999999999999999999999643222100 00000 0 0 12245678899999
Q ss_pred HHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEecccc-----CccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 81 ELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILS-----GLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~s-----g~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
++|++||||+||+|+|++ .++.+++.+|||++|+||+++..+ | ||+||++|+.+ .+ +.+
T Consensus 192 ~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~g------kg~~~~~~~~~--~~-------~~~ 256 (514)
T PRK07586 192 AALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERG------AGRPAVERLPY--FA-------EQA 256 (514)
T ss_pred HHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccC------CCCCCcccccc--hH-------HHH
Confidence 999999999999999987 456789999999999999987532 4 89999888764 11 233
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHH
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSF 234 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~ 234 (983)
+..+++|||||++|+++... ...+ ...+..+++.+.+...+. ...+|++.++++|.+.+....... .
T Consensus 257 ~~~~~~aDlvl~vG~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~-------~~~~d~~~~l~~L~~~l~~~~~~~---~ 323 (514)
T PRK07586 257 LAQLAGVRHLVLVGAKAPVA-FFAY--PGKPSRLVPEGCEVHTLA-------GPGEDAAAALEALADALGAKPAAP---P 323 (514)
T ss_pred HHHHhcCCEEEEECCCCccc-cccc--CCCccccCCCCceEEEEC-------CCcccHHHHHHHHHHhhcccccch---h
Confidence 45678999999999996211 1101 001111111111110000 013799999999988764321110 1
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcce
Q 041113 235 LRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWI 314 (983)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 314 (983)
.... ......+.++++.++++.|++.+|++++++.|+|+ +.+|...++.. ..|++|+
T Consensus 324 ~~~~--------~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~-~~~~~~~---------- 380 (514)
T PRK07586 324 LAAP--------ARPPLPTGALTPEAIAQVIAALLPENAIVVDESIT----SGRGFFPATAG-AAPHDWL---------- 380 (514)
T ss_pred hhhc--------cccCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCc----CHHHHHHhccc-cCCCCEE----------
Confidence 1000 00111245699999999999999999999999998 56666655553 4444443
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
.+. .|+||| |+|+|||+++|. +++|||++|||||+|++|||+|++| |++|+++||+||++|++++..+.....
T Consensus 381 -~~~-~g~mG~--~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~--~~lpv~ivV~NN~~y~~~~~~~~~~~~ 454 (514)
T PRK07586 381 -TLT-GGAIGQ--GLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQAR--ENLDVTTVIFANRAYAILRGELARVGA 454 (514)
T ss_pred -ccC-Cccccc--HHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHH--cCCCCEEEEEeCchhHHHHHHHHHhcC
Confidence 233 499999 999999999999 9999999999999999999999999 999999999999999999763210000
Q ss_pred Ccc-cc-ccccc-cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 394 EPR-IL-DQYFY-TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 394 ~~~-~~-~~~~~-~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
... .+ ..+.. ..+++||.++|++||+++++|++.+||+++|+++++.++|+||||.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~el~~al~~a~~~~~p~liev~~ 514 (514)
T PRK07586 455 GNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEEFADALAAALAEPGPHLIEAVV 514 (514)
T ss_pred CCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 000 00 00111 12468999999999999999999999999999999999999999975
No 77
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.2e-47 Score=409.93 Aligned_cols=250 Identities=30% Similarity=0.451 Sum_probs=221.7
Q ss_pred EEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCccccccc
Q 041113 499 EYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLP 578 (983)
Q Consensus 499 ~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~ 578 (983)
+++.+++|++.||.++.+++ ..++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~----~~~~~~~v~l~~~~G~~G~GE~~p~~------------------------------ 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRL----TRRRGLLLRLEDLTGPVGWGEIAPLP------------------------------ 47 (263)
T ss_pred ccEEEEeecCCcccccCceE----EEEeEEEEEEecCCCCeeEEeccchH------------------------------
Confidence 46789999999999998765 44899999999999999999998642
Q ss_pred ccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHH
Q 041113 579 LLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVE 658 (983)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 658 (983)
+++||||||||+.||..| ||.. +.+|++|+++. ..++ +
T Consensus 48 ------------------------a~aaid~AlwDl~gk~~g-------gg~~---------~~~v~~~~~~~-~~~~-~ 85 (263)
T cd03320 48 ------------------------LAFGIESALANLEALLVG-------FTRP---------RNRIPVNALLP-AGDA-A 85 (263)
T ss_pred ------------------------HHHHHHHHHhcccccccC-------CCCC---------ccCcceeEEec-CCCH-H
Confidence 458999999999999999 6654 46799998874 3455 5
Q ss_pred HHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC-
Q 041113 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ- 737 (983)
Q Consensus 659 ~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~- 737 (983)
..+++++++++||++||+|+|.. ++++|+++|+++|+.+|+++.|++|+|++|+.++|+++++.|+++++.|||||++
T Consensus 86 ~~~~~~~~~~~Gf~~~KiKvg~~-~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEqP~~~ 164 (263)
T cd03320 86 ALGEAKAAYGGGYRTVKLKVGAT-SFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIEYIEQPLPP 164 (263)
T ss_pred HHHHHHHHHhCCCCEEEEEECCC-ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCceEECCCCh
Confidence 66778888899999999999873 6789999999999999999999999999999999999999999999999999998
Q ss_pred -ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 738 -NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 738 -~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
+++.+++++ +++||++||+++++.+ +..+++. .+|++|+|++++||++++++++++|+++|+++++|+++|
T Consensus 165 ~d~~~~~~l~--~~~PIa~dEs~~~~~~-----~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~e 237 (263)
T cd03320 165 DDLAELRRLA--AGVPIALDESLRRLDD-----PLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALE 237 (263)
T ss_pred HHHHHHHHhh--cCCCeeeCCccccccC-----HHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchh
Confidence 556666666 7899999999999875 5555554 479999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhchh
Q 041113 816 SGLGLSAYIIFSSYLEL 832 (983)
Q Consensus 816 s~ig~~a~~~laa~~~~ 832 (983)
++|++++++|+++++++
T Consensus 238 s~ig~aa~~hlaa~~~~ 254 (263)
T cd03320 238 SSIGLGALAHLAAALPP 254 (263)
T ss_pred hHHHHHHHHHHHHhCCC
Confidence 99999999999999884
No 78
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=1.3e-46 Score=411.93 Aligned_cols=278 Identities=28% Similarity=0.412 Sum_probs=234.5
Q ss_pred EEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCcccccccc
Q 041113 501 SLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKISYFLPL 579 (983)
Q Consensus 501 ~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~~~~~~ 579 (983)
+.+++||+.||.++.+++ ..++.++|+|+ ++|++|||||.|.+ +++|+..++...++.+.+.+.++++..+.
T Consensus 1 ~~~~lpl~~p~~~a~g~~----~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~-- 73 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLL----ARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAID-- 73 (307)
T ss_pred CcEeccCCCCcCcCceeE----EeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhcc--
Confidence 357899999999999865 45999999999 56999999999886 56888888877787888888876654221
Q ss_pred cccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHHHH
Q 041113 580 LKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEV 659 (983)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 659 (983)
...+++++|||+||||+.||. +.|. . ..++. ..+ ...+++++
T Consensus 74 ------------------~~~~~~~~aie~Al~Dl~~k~-~~~~------~-----------~~~~~-~~l-~~~~~~~~ 115 (307)
T TIGR01927 74 ------------------DQLPSVAFGFESALIELESGD-ELPP------A-----------SNYYV-ALL-PAGDPALL 115 (307)
T ss_pred ------------------ccCcHHHHHHHHHHHHHhcCC-CCCc------c-----------cccce-eec-cCCCHHHH
Confidence 113567999999999999997 1111 1 11222 222 24567887
Q ss_pred HHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCceeecCC
Q 041113 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYIEEPV 736 (983)
Q Consensus 660 ~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~iEeP~ 736 (983)
.+++.+ ++||++||+|+|. .++++|+++|++||+++|+++.||+|+|++||.++|+++++.|++ +++.|||||+
T Consensus 116 ~~~~~~--~~Gf~~~KiKvG~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~ 192 (307)
T TIGR01927 116 LLRSAK--AEGFRTFKWKVGV-GELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPL 192 (307)
T ss_pred HHHHHH--hCCCCEEEEEeCC-CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCC
Confidence 777765 7899999999986 368999999999999999999999999999999999999999998 9999999999
Q ss_pred CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 737 QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 737 ~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
+..+++++|++++++||++|||+.+..| +..+++.+ +|++|+|++++||++++++++++|+++|+++++||++|
T Consensus 193 ~~~~~~~~l~~~~~~Pia~dEs~~~~~d-----~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~e 267 (307)
T TIGR01927 193 PDADEMSAFSEATGTAIALDESLWELPQ-----LADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFE 267 (307)
T ss_pred CCHHHHHHHHHhCCCCEEeCCCcCChHH-----HHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccc
Confidence 9558999999999999999999999764 66666655 59999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhch
Q 041113 816 SGLGLSAYIIFSSYLE 831 (983)
Q Consensus 816 s~ig~~a~~~laa~~~ 831 (983)
|+|++++++|++++++
T Consensus 268 s~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 268 SSIALGQLARLAAKLS 283 (307)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999876
No 79
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=1.1e-46 Score=415.40 Aligned_cols=297 Identities=25% Similarity=0.406 Sum_probs=243.8
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCcccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKISY 575 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~~ 575 (983)
+++++.+++||+.||.++.+++ ..++.++|+|+|++|++||||++|.+ +++|+..++...++.+.|.+.++++..
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~----~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~~~~~ 79 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLW----RIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPEQIFS 79 (320)
T ss_pred EEEEEEEEEecCCceEeccceE----EEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHHHHHh
Confidence 5779999999999999999865 45999999999999999999999876 567887777666655555544322110
Q ss_pred cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHH-HHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 576 FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN-AIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwD-l~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
+ . ...+++++|||+| || +.+|..+. .. ..++++..+ .
T Consensus 80 ---~---------~--------~~~~~~~~aie~A-~d~~~~~~~~~--------~~----------~~~~~~~~i---~ 117 (320)
T PRK02714 80 ---I---------P--------DALPACQFGFESA-LENESGSRSNV--------TL----------NPLSYSALL---P 117 (320)
T ss_pred ---h---------h--------hcCCHHHHHHHHH-HHHHhcccccC--------Cc----------CCCceeeec---C
Confidence 0 0 1134779999999 65 54443211 11 235666655 3
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
+++++.+++++++++||++||+|+|. .++++|+++|+++|+++|+++.|++|+|++|+.++|+++++.|++ +++.|
T Consensus 118 ~~~~~~~~a~~~~~~G~~~~KvKvG~-~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~ 196 (320)
T PRK02714 118 AGEAALQQWQTLWQQGYRTFKWKIGV-DPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEF 196 (320)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEECC-CChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccE
Confidence 45788899999999999999999997 357899999999999999999999999999999999999999987 79999
Q ss_pred eecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcE
Q 041113 732 IEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMA 808 (983)
Q Consensus 732 iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~ 808 (983)
||||++ +++++++|++++++||++|||+.++.| +..+++.+ +|++|+|++++||++++ .++|+++|+++
T Consensus 197 iEqP~~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d-----~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~ 268 (320)
T PRK02714 197 IEQPLPPDQFDEMLQLSQDYQTPIALDESVANLAQ-----LQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDA 268 (320)
T ss_pred EECCCCcccHHHHHHHHHhCCCCEEECCccCCHHH-----HHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCE
Confidence 999998 789999999999999999999999864 66666654 68899999999999865 46789999999
Q ss_pred EeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhccccc
Q 041113 809 VVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKED 862 (983)
Q Consensus 809 ~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 862 (983)
++||++||+||+++++|+++++++ +..++|++++.||.++
T Consensus 269 ~~~~~~es~ig~aa~~hlaa~~~~--------------~~~~~g~~~~~~~~~~ 308 (320)
T PRK02714 269 VFSSVFETAIGRKAALALAAELSR--------------PDRALGFGVTHWFSDE 308 (320)
T ss_pred EEEechhhHHHHHHHHHHHHhCCC--------------CCCCCCCCCccccccC
Confidence 999999999999999999999873 4678999999998765
No 80
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.1e-47 Score=414.08 Aligned_cols=398 Identities=16% Similarity=0.125 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
.+..|+|+++.|.. .++||||.+|.|..-.+.... ..|...... . ..+....+.++.+++
T Consensus 145 A~~eIDrvi~~~~~-~~RPvYI~lP~dva~~~~~~p---------------~~Pl~~~~~-~---sd~e~~~e~i~~i~~ 204 (557)
T COG3961 145 APREIDRVIRTALK-QRRPVYIGLPADVADLPIEAP---------------LTPLDLQLK-T---SDPEALSEVIDTIAE 204 (557)
T ss_pred hHHHHHHHHHHHHH-hcCCeEEEcchHHhcCcCCCC---------------CCccccccC-C---CCHHHHHHHHHHHHH
Confidence 46789999999998 458999999998533222110 011111100 0 112334467889999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc-cccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV-KDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~-~~~~ 159 (983)
+|.++|||+||+|..+. .+..+++.+|++++++|+++++| | ||+|+|.||.| +|.|.+..+.... ..++
T Consensus 205 lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pm-G------Kg~idEs~P~y--~GvY~G~~s~~~vre~vE 275 (557)
T COG3961 205 LINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPM-G------KGVIDESHPNY--LGVYNGKLSEPEVREAVE 275 (557)
T ss_pred HHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeec-c------cccccccCCCe--eeEEecccCCHHHHHHhh
Confidence 99999999999999876 56778999999999999999999 7 99999999995 7888655444444 4569
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
.||+||.+|+.+++..+.+|...+++.++|+++.+...+.......+ .++.+|+.|.+.+..+....-..
T Consensus 276 ~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~~~------ 345 (557)
T COG3961 276 SADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIKDAVFTNL----SMKDALQELAKKIDKRNLSAPPV------ 345 (557)
T ss_pred cCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEecccccCCe----eHHHHHHHHHHHhhhcccCCCCc------
Confidence 99999999999999999999988888889999988876654433333 57899999987764432110000
Q ss_pred HHHHHHHHh--hhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEe
Q 041113 240 MMVASEISF--QICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVA 317 (983)
Q Consensus 240 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 317 (983)
+.....++ ......+++...+++.+++++.++++|++|.|. ..|+..-..+ ++..+|+ ..
T Consensus 346 -~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGt-----S~FG~~~~~l-P~~~~~i-----------~Q 407 (557)
T COG3961 346 -AYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGT-----SFFGALDIRL-PKGATFI-----------SQ 407 (557)
T ss_pred -cCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEcccc-----ccccceeeec-CCCCeEE-----------cc
Confidence 00000010 123456799999999999999999999999998 4455443332 3434443 45
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPR 396 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~ 396 (983)
..||++|| ++|+++|+++|. +||||+++||||||||.||++|+.| ++++++|+|+||+||.|+|.++...
T Consensus 408 ~lWGSIG~--t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR--~gl~p~ifvlNN~GYTIEr~IHg~~----- 478 (557)
T COG3961 408 PLWGSIGY--TLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIR--WGLKPIIFVLNNDGYTIERAIHGPT----- 478 (557)
T ss_pred cchhhccc--ccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHH--cCCCcEEEEEcCCCcEEEehhcCCC-----
Confidence 88999999 999999999999 9999999999999999999999999 9999999999999999999885432
Q ss_pred ccccccccCCCCCHHHHHHHcCCc----eeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 397 ILDQYFYTTHNISIQNLCLAHGLN----HVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 397 ~~~~~~~~~~~~df~~la~a~G~~----~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
..|.+..+|||.++.++||+. ..++++.++|..+++.+++ .+++.+|||.++..+.++.+.++.+....
T Consensus 479 ---~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~ 552 (557)
T COG3961 479 ---APYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIEVMLPVLDAPELLIDQAKATAA 552 (557)
T ss_pred ---cCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEEEecCcccCCHHHHHHHHhhhh
Confidence 123445789999999999984 2678999999999999986 46899999999999999988887766544
No 81
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=6e-46 Score=409.53 Aligned_cols=297 Identities=26% Similarity=0.417 Sum_probs=248.6
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHHHHHhHhccCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLRFLLHFMTGAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~~~~~~l~g~~~~ 574 (983)
++|+++.+++||+.||.++.+++ ..++.++|+|+ ++|++|||||+|.+ +++|+..++...+..+.+.+.+.+..
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~----~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~ 76 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRL----KTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCD 76 (322)
T ss_pred cceEEEEEEEecCCCceecceEE----EEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccc
Confidence 57999999999999999999865 45999999997 88999999999876 56788877766665533333333222
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
.+ ....+++++++++|+||+.||..+.|++. .+++ +..
T Consensus 77 ~~--------------------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~-----------------~~~l-----~~~ 114 (322)
T PRK05105 77 DE--------------------LSQYPSVAFGLSCALAELAGTLPQAANYR-----------------TAPL-----CYG 114 (322)
T ss_pred cc--------------------cccCcHHHHHHHHHHHHhcCCCCCCCCcc-----------------eeee-----ecC
Confidence 10 01246788999999999999988888752 1222 125
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
++++++++++++ +||++||+|+|. .++++|+++|++||+++ +++.||+|||++||+++|+++++.|++ +++.|
T Consensus 115 ~~~~~~~~a~~~--~Gf~~~KvKvG~-~~~~~d~~~i~~vr~~~-~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~ 190 (322)
T PRK05105 115 DPDELILKLADM--PGEKVAKVKVGL-YEAVRDGMLVNLLLEAI-PDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAF 190 (322)
T ss_pred CHHHHHHHHHHc--CCCCEEEEEECC-CCHHHHHHHHHHHHHhC-CCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCccE
Confidence 788899888887 899999999996 26889999999999999 799999999999999999999999999 99999
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
||||+++.++++++++++++||++|||+.+.. +......+++++|+|++++||++++++++++|+++|+++++|
T Consensus 191 iEqP~~~~~~~~~l~~~~~~PIa~DEs~~~~~------~~~~~~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~ 264 (322)
T PRK05105 191 LEEPCKTPDDSRAFARATGIAIAWDESLREPD------FQFEAEPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVIS 264 (322)
T ss_pred EECCCCCHHHHHHHHHhCCCCEEECCCCCchh------hhhhhcCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 99999878899999999999999999998863 223335568999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 812 AAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
||+||+|+.++++|++++++ +...+|++++.+|.+|+.
T Consensus 265 ~~~es~i~~aa~~hla~~~~---------------~~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 265 SSIESSLGLTQLARLAAWLT---------------PDTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CchhHHHHHHHHHHHHHhcC---------------CCCCCCCChHHHHhhccc
Confidence 99999999999999999974 134567889999998864
No 82
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-44 Score=397.82 Aligned_cols=411 Identities=34% Similarity=0.488 Sum_probs=325.5
Q ss_pred HHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCc-cc-ccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 4 TTLDSAVHWATSSPYGPVHINCPFREPLDNSPKH-WM-SSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 4 ~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~-~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
..-.++...|++..+||||||||+++|+.+.... .+ .++.+.+..|.-...+.... .. .+.+.+ .+
T Consensus 151 ~~~~~~~~~a~~~~~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~-~~ 218 (566)
T COG1165 151 TIASAAAQQARTPHAGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVD----------QG-PDLLSE-WF 218 (566)
T ss_pred HHHHHHHHhccCCCCCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeee----------cc-cccccc-hh
Confidence 4456778888889999999999999999887432 01 11111111121111111100 00 112222 33
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF 161 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~a 161 (983)
. -.+||++||+|..... +.+.+.++|+.+|+|+++++.|++|. ++..|+.+......+.-...
T Consensus 219 ~-~~~~rgviv~G~~~~~-e~~~i~~~a~~lg~PilaDplS~lr~---------------~i~~yD~~L~~~~~~~~L~~ 281 (566)
T COG1165 219 F-WRQKRGVIVAGRMSAQ-EGKGILALANTLGWPILADPLSPLRN---------------YIPCYDLWLANPKAAEKLRP 281 (566)
T ss_pred h-hcccCceEEEecCchh-hhHHHHHHHHHhCCceecccccccCC---------------CcccchhhhcCchhhhhcCc
Confidence 3 3579999999986543 34569999999999999999998641 13445544433322222344
Q ss_pred CEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHHH
Q 041113 162 DVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMM 241 (983)
Q Consensus 162 Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~ 241 (983)
|.||.||.++.++++..|+....+.+++.||..+.+.++.+..+..+.+++..+++.+.... ..+..|.++|....+.
T Consensus 282 d~VI~fG~~~~SK~l~qwl~~~~~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~--~~~~~Wl~~~~~~~~~ 359 (566)
T COG1165 282 DIVIQFGSPPTSKRLLQWLADTEPIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAG--RIRKPWLDEWLALNEK 359 (566)
T ss_pred cEEEEeCCCcccHHHHHHHhccCCCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhcccc--ccccHHHHHHHHHHHH
Confidence 99999999999999999998777678888999999999998888889999999997765432 1256899999888777
Q ss_pred HHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCC
Q 041113 242 VASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRG 321 (983)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G 321 (983)
.++.......+. .++..++..+|.+.+|+++.+|++||++||+.+.|.... ..+++++|+|
T Consensus 360 ~~~~v~~~~~~~-~~~e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~~~~~~------------------~~~~v~sNRG 420 (566)
T COG1165 360 ARQAVRDQLAAE-ALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDALGQLP------------------AGYRVYSNRG 420 (566)
T ss_pred HHHHHHHHhccc-CchhhHHHHHHHHhCCCCCeEEEecCchhhhHHHhccCc------------------cCceeecCCC
Confidence 666554444333 788999999999999999999999999999999987531 3456789999
Q ss_pred CCCccchHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccc
Q 041113 322 ASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQY 401 (983)
Q Consensus 322 ~mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~ 401 (983)
+.|+||.+++|+|++.|.++|+|+++||.||+|+++.|....+ ...|++|||+||+|+|||+++|+... ...++++
T Consensus 421 A~GIDG~vSTA~Gi~~a~~~ptv~liGDLS~lhD~NgLl~~k~--~~~~ltIvv~NNnGGgIF~~Lp~~~~--~~~fe~~ 496 (566)
T COG1165 421 ASGIDGTVSTALGIARATQKPTVALIGDLSFLHDLNGLLLLKK--VPQPLTIVVVNNNGGGIFSLLPQAQS--EPVFERL 496 (566)
T ss_pred ccccchhHHHHhhhhhhcCCceEEEEechhhhhccchHhhcCC--CCCCeEEEEEeCCCceeeeeccCCCC--cchHHHh
Confidence 9999999999999999998999999999999999999998655 89999999999999999999998754 2368999
Q ss_pred cccCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 402 FYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 402 ~~~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
|+++++.||+.+|+.||+++.++.+.+||+++++.+....|..||||++++++....++++.+.+..
T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~~~~g~~viEvkt~r~~~~~~~q~l~~~~~~ 563 (566)
T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQSWDELGEALDQAWRRSGTTVIEVKTDRSDGAQLHQALLAQVSH 563 (566)
T ss_pred cCCCCCCCHHHHHHHhCccccccCcHHHHHHHHhhhccCCCcEEEEEecChhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888999999999999999999999988764
No 83
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=385.38 Aligned_cols=404 Identities=15% Similarity=0.129 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHccCC-CCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHH
Q 041113 2 ILTTLDSAVHWATSS-PYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVL 80 (983)
Q Consensus 2 i~~~i~~A~~~a~~~-~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (983)
|...+.||++.++.+ ..|||.|.+|.|++-.-. +++ .++| ....... ..+.|+...++.++
T Consensus 162 l~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~----Dyp-~~FF----------~~rv~~~---rR~~Pd~~eL~~A~ 223 (617)
T COG3962 162 LMSALPRAMRVMTDPADCGPVTLALCQDVQAEAY----DYP-ESFF----------EKRVWRI---RRPPPDERELADAA 223 (617)
T ss_pred HHHHHHHHHHHhCChhhcCceEEEechhhhhhhc----CCc-HHhh----------hhhhhhc---cCCCCCHHHHHHHH
Confidence 567889999999886 569999999999643221 110 0111 1110101 13467888999999
Q ss_pred HHHhcCCceEEEEccCCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccC
Q 041113 81 ELVQGVNKGLLLVGAVHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159 (983)
Q Consensus 81 ~~L~~AkrPvIl~G~g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~ 159 (983)
++|+++|||+||+|+|+.+ ++.++|++|+|..|+||+.|-. | ||.++.+||++ +|.+|..|..++++..+
T Consensus 224 ~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQa-G------Ksal~~dhplN--lG~vGvTGt~AAN~~A~ 294 (617)
T COG3962 224 ALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQA-G------KSALAWDHPLN--LGGVGVTGTLAANRAAE 294 (617)
T ss_pred HHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccC-C------cccccccCccc--cccccccchHHHHhhhh
Confidence 9999999999999999985 5667999999999999999984 8 89999999997 68888888999999999
Q ss_pred CCCEEEEeCCccccHHHHHHHHh-cCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCC-CCChhHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEE-CFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-HRSSKWCSFLRA 237 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~-~~~~~w~~~~~~ 237 (983)
+|||||.||+|+.++.|..|.-. .+..++|.++..+- +....-...+++|++..|++|.+.+.. +....|.++..+
T Consensus 295 ~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~~--da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~ 372 (617)
T COG3962 295 EADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPF--DAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERER 372 (617)
T ss_pred hcCEEEEecccccccccccHHHhcCCCceEEEeecccc--cccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 99999999999999988877543 23346887776654 433345578899999999999998865 345568877766
Q ss_pred HHHHHHHHHHhhhcc----cCCCCHHHHHHHHHhhcCCCceEEEecCcch-hhhhhhcCCCcccccccccccccCCCCCc
Q 041113 238 LDMMVASEISFQICA----DYSLTEPHVAHELSRALTSNSALFVGNSMAI-RDLDMYGRNWTTCTHTVADIMLNSEFPHQ 312 (983)
Q Consensus 238 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 312 (983)
....|..+....... +.-.+..+++-.+++..+++++|++..|.-. -.+.+|-. ..|++
T Consensus 373 ~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~------~~p~~---------- 436 (617)
T COG3962 373 LKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRA------GVPGT---------- 436 (617)
T ss_pred hhhhhhhhcccccccccccccCccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhcc------CCCCc----------
Confidence 655554433222111 1335678999999999999999997776644 34456653 34443
Q ss_pred ceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 313 WIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 313 ~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
+|.-.+|.+||| -+..+||+|+|. ++.|++++|||||||--.||.|.+. +++.|+|++++|.|||.|..++...
T Consensus 437 -YH~EYgfSCMGY--EiaG~lG~K~a~pdreV~vmVGDGSymMlnSEL~Tsv~--~g~Ki~Vvl~DN~GyGCIn~LQm~~ 511 (617)
T COG3962 437 -YHLEYGFSCMGY--EIAGGLGAKAAEPDREVYVMVGDGSYMMLNSELATSVM--LGKKIIVVLLDNRGYGCINRLQMAT 511 (617)
T ss_pred -eeeeeccccccc--ccccccccccCCCCCeEEEEEcccchhhhhHHHHHHHH--cCCeEEEEEECCCCcchhhhhhhhc
Confidence 446789999999 899999999998 8999999999999999999999998 9999999999999999998875432
Q ss_pred CCCccccccccc------cCCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchH
Q 041113 392 RTEPRILDQYFY------TTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 392 ~~~~~~~~~~~~------~~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~ 457 (983)
.. ..|+..+. ...++||++.|++||++.++|.+.+||+.+|+++.++.+++||++.+++.....
T Consensus 512 Gg--~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL~aAL~~Ak~~~~ttvi~I~t~P~~~t~ 581 (617)
T COG3962 512 GG--ASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALADAKASDRTTVIVIDTDPKTTTD 581 (617)
T ss_pred Cc--chhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCHHHHHHHHHHHHhCCCCEEEEEecCCccccC
Confidence 21 22333222 235799999999999999999999999999999999999999999999965544
No 84
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=2.1e-43 Score=393.34 Aligned_cols=299 Identities=15% Similarity=0.188 Sum_probs=237.4
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCccc-------HHHHHHHHH-HHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN-------LLDAEEQLR-FLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~-------~~~~~~~l~-~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.+. +...+.++|+|+|++|.+|||||+|..|++++ ..++...++ .++|.|+|+++.+++.++
T Consensus 36 ~~~t~~~~~~---~~~~~~vlV~i~tddG~~G~GE~~~~~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~ 112 (408)
T TIGR01502 36 SPVTEGFTQI---RQPGESLSVLLVLEDGQVVHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMA 112 (408)
T ss_pred CCCCCchhhh---eecCcEEEEEEEECCCCEEEEEeecceeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHH
Confidence 3555555543 24488999999999999999999876454443 455555565 589999999998866554
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecC--CCCHHH
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDS--NKSPVE 658 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~ 658 (983)
..+ ..... ... .+.++++|||+||||++||.+|+|+|+|||+.... ...+++||+|+++.. ..++++
T Consensus 113 ~~~-----~~~~~-~~~-~~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~----~~~~~~vp~~~s~g~~~~~~~d~ 181 (408)
T TIGR01502 113 EVF-----EKMTV-NRN-LHTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNP----GAETNAVPVFAQSGDDRYDNVDK 181 (408)
T ss_pred HHH-----HHHhh-cCc-chhHHHHHHHHHHHHHHHHHcCCcHHHHhCccccc----CCcCCceeEEEEeeccCCCCHHH
Confidence 321 11111 111 45678899999999999999999999999952100 001467999988632 356899
Q ss_pred HHHHHHHhhhcC-CCEEEEeccCCCChHHHH-------HHHHHHHHHcCCCcEEEEEcCC------CCCHHHHHHHHhhc
Q 041113 659 VASIATTLVEEG-FTAIKLKVARRADPIKDA-------EVIQEVRKKVGHRIELRVDANR------NWTYQEALEFGFLI 724 (983)
Q Consensus 659 ~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~-------~~v~~vr~~~g~~~~l~vDaN~------~~~~~~a~~~~~~l 724 (983)
++.++++++++| |+.|| |+|. +..+|. ++|+++|+. |++..|++|+|+ +||+++|+++++.|
T Consensus 182 m~~~a~~~~~~G~~~~~K-kvG~--~~~k~~~~~~~~~~ri~~lr~~-g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l 257 (408)
T TIGR01502 182 MILKEVDVLPHGLINSVE-ELGL--DGEKLLEYVKWLRDRIIKLGRE-GYAPIFHIDVYGTIGEAFGVDIKAMADYIQTL 257 (408)
T ss_pred HHHHHHHHHhccCcccee-eecC--CHHHhhhhHHHHHHHHHHhhcc-CCCCeEEEEcCCCcccccCCCHHHHHHHHHHH
Confidence 999999999998 99999 8997 444444 566666643 778899999998 99999999999999
Q ss_pred cc----CCCceeecCCC--C----hHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCc
Q 041113 725 KD----CDLQYIEEPVQ--N----EEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVI 788 (983)
Q Consensus 725 ~~----~~i~~iEeP~~--~----~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~ 788 (983)
++ +++ |||||++ + ++++++|+++ +++||++||++.++.| +..+++. .+|++|+|++++
T Consensus 258 ~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d-----~~~~i~~~a~d~v~iK~~k~ 331 (408)
T TIGR01502 258 AEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVED-----VKFFTDAKAGHMVQIKTPDV 331 (408)
T ss_pred HHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHH-----HHHHHHhCCCCEEEeCcccc
Confidence 85 888 9999997 3 7888999987 6999999999999864 5555654 479999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
|||+++++++++|+++|+++++|+++ ||+++.++++|++++.+
T Consensus 332 GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I~~aa~~Hlaaa~~ 375 (408)
T TIGR01502 332 GGVNNIARAIMYCKANGMGAYVGGTCNETNRSAEVTTHVGMATG 375 (408)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999886 99999999999999876
No 85
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.8e-44 Score=392.63 Aligned_cols=287 Identities=17% Similarity=0.233 Sum_probs=223.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCc---CcccH----HHHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCCC
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEI---HKENL----LDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPA 596 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~---~~~~~----~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (983)
-+.++|||+||+|++||||+.|..+ ++++. ..+...+ +.++|.|+|+++.+++.++..+.. .. ...
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~-----~~-~~g 85 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDK-----MR-LDG 85 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHH-----Hh-hcC
Confidence 4688999999999999999875322 12212 2233344 358999999999987776643321 11 011
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC--CCHHHHHHHHHHhhh------
Q 041113 597 CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN--KSPVEVASIATTLVE------ 668 (983)
Q Consensus 597 ~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~------ 668 (983)
.....++++|||+|||||+||.+|+|||+||||... .-..+++|++|.++... ...+++.++++++++
T Consensus 86 ~~~~~aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~----~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (369)
T cd03314 86 NRLHTAIRYGVSQALLDAVALAQRRTMAEVLCDEYG----LPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINN 161 (369)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCcHHHHcCCccc----CCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhh
Confidence 223457889999999999999999999999994310 00015789999875321 345777777666653
Q ss_pred ---cCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC----C--CHHHHHHHHhhcccC-C--CceeecCC
Q 041113 669 ---EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN----W--TYQEALEFGFLIKDC-D--LQYIEEPV 736 (983)
Q Consensus 669 ---~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~----~--~~~~a~~~~~~l~~~-~--i~~iEeP~ 736 (983)
+||+.+|+|+ +.++|.++++++| ++|+++.|++|+|++ | |+++|+++++.|+++ + +.|||||+
T Consensus 162 ~k~kG~~~~K~~~----~~~~~~~~v~avr-~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~ 236 (369)
T cd03314 162 VEEKGPKGEKLLE----YVKWLSDRIRKLG-RPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPM 236 (369)
T ss_pred HhhcCccHHHHHH----hHHHHHHHHHHHh-hcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 3666666654 3567899999999 889999999999986 6 999999999999875 3 78999999
Q ss_pred C--C----hHHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHc
Q 041113 737 Q--N----EEDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRH 804 (983)
Q Consensus 737 ~--~----~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~ 804 (983)
+ | ++++++|+++ +++||++||+++++.+ ++.+++. .+|++|+|++++|||+++++++++|+++
T Consensus 237 ~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d-----~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~ 311 (369)
T cd03314 237 DAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLED-----IRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEH 311 (369)
T ss_pred CCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHH-----HHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHc
Confidence 8 3 5889999988 5899999999999764 6666654 4799999999999999999999999999
Q ss_pred CCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 805 GKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 805 gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
|+++++||+ ++++++.++++|++++++
T Consensus 312 Gi~~~~h~~~~es~I~~aa~lHlaaa~~ 339 (369)
T cd03314 312 GVGAYLGGSCNETDISARVTVHVALATR 339 (369)
T ss_pred CCcEEEeCCCCCchHHHHHHHHHHHhcC
Confidence 999998877 599999999999999977
No 86
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=4e-43 Score=356.46 Aligned_cols=403 Identities=16% Similarity=0.204 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+|.++++||+.++|+|||||.|++|+|+++.... ++. +.+ .|.+. + .+.....+.+++..
T Consensus 139 vp~v~qkafhlmrs~rpgpvlidlp~dvq~aeie--fd~------d~y----epl~~------~--kpaatr~qaekala 198 (592)
T COG3960 139 VPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIE--FDP------DMY----EPLPV------Y--KPAATRVQAEKALA 198 (592)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEecccceEEEEEe--cCc------ccc----CcCCc------C--CchhHHHHHHHHHH
Confidence 5788999999999999999999999997665431 000 000 12211 1 23445567788999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhc-cCccccccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHAL-LSESVKDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~-~~~~~~~~~ 159 (983)
+|..|+||+|++|+|.. .++++.+.+|||..|+||+.|.| |. |++|++||+. .|+.|... +...+..+.
T Consensus 199 ml~~aerplivagggiinadaa~l~~efael~gvpviptlm-gw------g~ipddhplm--agm~glqtshrygnatll 269 (592)
T COG3960 199 MLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLM-GW------GCIPDDHPLM--AGMVGLQTSHRYGNATLL 269 (592)
T ss_pred HHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchhc-cc------cccCCcchhh--cccccceecccccchhhh
Confidence 99999999999999976 45778999999999999999999 74 9999999995 67777543 345667788
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC-------CCCChhH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV-------PHRSSKW 231 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~-------~~~~~~w 231 (983)
.+|+|+-||.|+....| +....+. .+++||+|+.|..+++.+.+++.|++|.++.|+.+++... -+.+..|
T Consensus 270 ~sd~vfgignrwanrht-gsv~vyt~gr~fihvdieptqigrvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw 348 (592)
T COG3960 270 ASDMVFGIGNRWANRHT-GSVEVYTEGRKFIHVDIEPTQIGRVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAW 348 (592)
T ss_pred hhhheeeccchhhhccc-CceeeeecCceEEEEeccccccceeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHH
Confidence 99999999999854443 3333343 3579999999999999999999999999999999887531 1345667
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC
Q 041113 232 CSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH 311 (983)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 311 (983)
.+.+++++...... ..-++-|+.|.++.+++++..+.|...|...|. .++.+.+++++ ++||.|
T Consensus 349 ~~~cq~rkrtl~rk---thfd~vp~kpqrvyeemn~~fgrd~~yvstigl----sqia~aqflhv-~~pr~w-------- 412 (592)
T COG3960 349 VADCQQRKRTLLRK---THFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGL----SQIAAAQFLHV-FKPRHW-------- 412 (592)
T ss_pred HHHHHHHHHHHhhh---cccccCCCCHHHHHHHHHhhcCCceeEEEeccH----HHHhhhhhhhh-cCCcce--------
Confidence 77666655433221 112356899999999999999999999988888 77777787775 665554
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+. .+.-|.+|| .+|+|+|...|. ++.||++.||-.|+|-+.||...++ +++|-+-||+||...|.+++.+.+
T Consensus 413 --in-cgqagplgw--tipaalgv~~adp~r~vvalsgdydfqfmieelavgaq--~k~pyihv~vnnaylglirqaqr~ 485 (592)
T COG3960 413 --IN-CGQAGPLGW--TIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQ--FKIPYIHVLVNNAYLGLIRQAQRA 485 (592)
T ss_pred --ee-cCccCCccc--ccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhc--ccCceEEEEecchHHHHHHHHHhc
Confidence 43 467799999 999999999999 9999999999999999999999998 999999999999999999874221
Q ss_pred CCC---Ccccccccccc---CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCcccchH
Q 041113 391 DRT---EPRILDQYFYT---THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCIDANAT 457 (983)
Q Consensus 391 ~~~---~~~~~~~~~~~---~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~~~~~~ 457 (983)
-.+ ..-.|++.... .-.+|-.++++++||+..+|.+++|+..+++++. +..-|+|+|+..++-.+-.
T Consensus 486 f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnis 562 (592)
T COG3960 486 FDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNIS 562 (592)
T ss_pred CCccceeeehhhccCCccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccc
Confidence 100 00011111111 1258999999999999999999999999999874 3578999999988755443
No 87
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=2.6e-42 Score=364.80 Aligned_cols=221 Identities=24% Similarity=0.361 Sum_probs=201.3
Q ss_pred EEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHHHHHhHhccCcccccc
Q 041113 498 MEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFL 577 (983)
Q Consensus 498 v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~~~~~~l~g~~~~~~~ 577 (983)
|+++.+++|++.||.++.++. ..++.++|+|+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~----~~~~~~iv~l~~~~G~~G~Ge~--------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTA----DTNDTVLVKLTTDSGVVGWGEV--------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceE----eeceeEEEEEEECCCCcchhhH---------------------------------
Confidence 467889999999999988764 4489999999999999999998
Q ss_pred cccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCCCHH
Q 041113 578 PLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPV 657 (983)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 657 (983)
++|||+||||++||.+|+|||+||||.. +.+||+|++
T Consensus 44 --------------------------~~aid~Al~Dl~gk~~~~pl~~llgg~~---------~~~v~~~~~-------- 80 (229)
T cd00308 44 --------------------------ISGIDMALWDLAAKALGVPLAELLGGGS---------RDRVPAYGS-------- 80 (229)
T ss_pred --------------------------HHHHHHHHHHHhHhHcCCcHHHHcCCCC---------CCceeccHH--------
Confidence 3889999999999999999999999975 467888754
Q ss_pred HHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC
Q 041113 658 EVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ 737 (983)
Q Consensus 658 ~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 737 (983)
+++|+++|+++|+++.|++|+|++|+.++|+++++.|+++++.|||||++
T Consensus 81 ------------------------------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~ 130 (229)
T cd00308 81 ------------------------------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIEEPCA 130 (229)
T ss_pred ------------------------------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEECCCC
Confidence 77899999999999999999999999999999999999999999999998
Q ss_pred --ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 --NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 --~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+++++++|++.+++||++||++.+..+ +..+++ ..+|++|+|++++||++++++++++|+++|+++++|+++
T Consensus 131 ~~d~~~~~~L~~~~~~pIa~dEs~~~~~~-----~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~ 205 (229)
T cd00308 131 PDDLEGYAALRRRTGIPIAADESVTTVDD-----ALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTL 205 (229)
T ss_pred ccCHHHHHHHHhhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCC
Confidence 688999999999999999999998753 434444 457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhchhh
Q 041113 815 ESGLGLSAYIIFSSYLELQ 833 (983)
Q Consensus 815 es~ig~~a~~~laa~~~~~ 833 (983)
+|+++.++++|++++++|.
T Consensus 206 ~s~i~~~a~~hlaa~~~~~ 224 (229)
T cd00308 206 ESSIGTAAALHLAAALPND 224 (229)
T ss_pred CCHHHHHHHHHHHHhCCCc
Confidence 9999999999999998863
No 88
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-39 Score=348.94 Aligned_cols=402 Identities=17% Similarity=0.134 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
.++.|++|++.|.. ...||||.||.|..-.+.+.... -..|..-. +.. .......+.++.+++
T Consensus 145 A~~~ID~aI~~~~~-~~rPVYi~iP~n~~~~~~~~~~l------------~~~p~~~~--~~~--s~~e~~~~~v~~i~e 207 (561)
T KOG1184|consen 145 APEQIDKAIRTALK-ESKPVYIGVPANLADLPVPAFGL------------LPVPLDLS--PKP--SNKEGLEEAVDAILE 207 (561)
T ss_pred hHHHHHHHHHHHHH-hcCCeEEEeecccccCcCCcccC------------CCCCcccC--CCC--CcHHHHHHHHHHHHH
Confidence 57899999999997 55899999999854333211000 00111110 000 112334567888999
Q ss_pred HHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc-cccC
Q 041113 82 LVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV-KDWI 159 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~-~~~~ 159 (983)
++.++++|+|++|.-.+ .....+..+|+++++.|++.|++ | ||.++|+||.| .|.|.+..+.... ..++
T Consensus 208 ~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~-g------Kg~i~E~hp~y--~Gvy~G~vs~~~~~e~ve 278 (561)
T KOG1184|consen 208 LINKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPM-G------KGFIPESHPHY--GGVYWGAVSTPFVKEIVE 278 (561)
T ss_pred HhhhccCCeeeccccccHHHHHHHHHHHHHhhCCCeeEeec-c------cccccCcCCce--eeEEecccccHhHHHHHh
Confidence 99999999999999876 45667999999999999999998 7 99999999995 7887544444333 3568
Q ss_pred CCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHH
Q 041113 160 QFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALD 239 (983)
Q Consensus 160 ~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~ 239 (983)
.||+||.+|..+++..+.+|...++...+|+++.|...+.. ...-. -+++.+++.|++.+.....+ +.. ..+
T Consensus 279 saDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~~--~~f~~--v~mk~~l~~Lak~I~~~~~~-~~~---y~~ 350 (561)
T KOG1184|consen 279 SADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIRN--ATFGG--VLMKDFLQELAKRIKKNKTS-YEN---YVR 350 (561)
T ss_pred hcCeEEEecccccccccceeEeecCccceEEEecceEEecc--ccccc--eeHHHHHHHHHHhhcccccc-hhc---ccc
Confidence 99999999999999999888877776678888877755532 11112 27899999999887543211 100 000
Q ss_pred HHHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeec
Q 041113 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGN 319 (983)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (983)
.....-.........++....++++++..+.++++++.++|.+ .|......+ + .+..+.....
T Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S-----~F~~~~~~f-P-----------~g~~~~~q~~ 413 (561)
T KOG1184|consen 351 IPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDS-----WFGINQTKF-P-----------KGCGYESQMQ 413 (561)
T ss_pred cCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccc-----eecceeecc-c-----------cccceEEEEE
Confidence 0000000001123456889999999999999999999988882 233332222 2 2233335688
Q ss_pred CCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 320 RGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 320 ~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
||++|| ++|+++|+++|. +++|++++||||||+|+||++|+.| .++|+.|+|+||+||.+.+.++.
T Consensus 414 wgsIG~--svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir--~gl~~~if~~NN~GYTIE~~IH~--------- 480 (561)
T KOG1184|consen 414 WGSIGW--SVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIR--WGLKPIIFLINNGGYTIEVEIHD--------- 480 (561)
T ss_pred Eeeccc--cchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHh--cCCCcEEEEEeCCceEEEEeecC---------
Confidence 999999 999999999999 9999999999999999999999999 99999999999999999987632
Q ss_pred ccccccCCCCCHHHHHHHcCC-----ceeeeCCHHHHHHHHHhhh--ccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 399 DQYFYTTHNISIQNLCLAHGL-----NHVQVKTKVELEEALSMSQ--HLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~eL~~aL~~a~--~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
.. +....+|||..+.++||. +..+|.+.+|+.++++.+. +.+++.+|||.++.++.++.+-.+++....
T Consensus 481 ~~-Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~ 556 (561)
T KOG1184|consen 481 GP-YNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAA 556 (561)
T ss_pred CC-ccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhh
Confidence 12 334567999999999985 4678999999999999876 357899999999999999988887776554
No 89
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=7e-37 Score=334.55 Aligned_cols=224 Identities=25% Similarity=0.360 Sum_probs=192.6
Q ss_pred cceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHH
Q 041113 641 STSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALE 719 (983)
Q Consensus 641 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~ 719 (983)
+++|++|+++. ..+++++.+.++++ .||+++|+|+|.. .++++|+++|++||+++|+++.|++|+|++||+++|++
T Consensus 76 r~~vp~~~tv~-~~~~e~~~~~~~~~--~G~~~~KvKVg~~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~ 152 (327)
T PRK02901 76 RDRVPVNATVP-AVDAAQVPEVLARF--PGCRTAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVA 152 (327)
T ss_pred CCeEEeeEEeC-CCCHHHHHHHHHHh--CCCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 57899998863 34677776666654 6999999999852 26789999999999999999999999999999999999
Q ss_pred HHhhc-ccCCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCCCcCCHHHHHHH
Q 041113 720 FGFLI-KDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 720 ~~~~l-~~~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~~~GGl~~~~~~ 797 (983)
+++.| +++++.||||||++.+++++|++++++|||+|||+++..| +..+++ .++|++++|++++||++++++
T Consensus 153 ~~~~L~e~~~l~~iEqP~~~~~~la~Lr~~~~vPIA~DEs~~~~~d-----~~~l~~~~a~dvi~ik~~~~GGit~~lk- 226 (327)
T PRK02901 153 AARALDADGPLEYVEQPCATVEELAELRRRVGVPIAADESIRRAED-----PLRVARAGAADVAVLKVAPLGGVRAALD- 226 (327)
T ss_pred HHHHhhhccCceEEecCCCCHHHHHHHHHhCCCCEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCcchhCCHHHHHH-
Confidence 99999 7899999999999999999999999999999999999764 444554 457999999999999999888
Q ss_pred HHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCCCCCceeec----c
Q 041113 798 ARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISICH----N 873 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~p~~~~~----~ 873 (983)
+|+++|+++++||+++|+||+++++|++++++|. ...+|+++..++..|+ .+|+.+++ +
T Consensus 227 --iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~--------------~~~~gl~t~~~~~~dl-~~~l~~~dG~i~v 289 (327)
T PRK02901 227 --IAEQIGLPVVVSSALDTSVGIAAGLALAAALPEL--------------DHACGLATGGLFEEDV-ADPLLPVDGFLPV 289 (327)
T ss_pred --HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCC--------------CcccccCchhhhhhcc-CCCceeeCCEEeC
Confidence 5789999999999999999999999999999853 3345677777888888 77888773 6
Q ss_pred CCCCeeeEEecchhhhhhhccccc
Q 041113 874 SCRGFVEASVAKATHILQNLQINN 897 (983)
Q Consensus 874 P~~pGlGv~~d~a~~~~~~~~~~~ 897 (983)
|+ +++| ++.++++..+.
T Consensus 290 p~-----v~~d--~~~l~~~~~~~ 306 (327)
T PRK02901 290 RR-----VTPD--PARLAALAADP 306 (327)
T ss_pred CC-----CCCC--HHHHHhccCCH
Confidence 66 7888 88998988754
No 90
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=2e-33 Score=319.85 Aligned_cols=306 Identities=19% Similarity=0.175 Sum_probs=222.8
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLL 555 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~ 555 (983)
|||++|+.+.+- .+. .+++|.|+|+|++|.+|+|++.... |.+.++.
T Consensus 2 ~~I~~v~~r~i~--------dsr--------g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~ 65 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR--------GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVL 65 (425)
T ss_pred CeEEEEEEEEEE--------cCC--------CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHH
Confidence 699999988872 222 2688999999999999999874211 2233333
Q ss_pred HHHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcc
Q 041113 556 DAEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEI 633 (983)
Q Consensus 556 ~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~ 633 (983)
...+.+ +.+.|.|+|+++.+.+.++.. +....+.. .......|++|||+|+||+.||.+|+|||+||||...
T Consensus 66 ~av~~v~~~iap~LiG~d~~d~~~id~~-----l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~- 139 (425)
T PRK00077 66 KAVENVNEEIAPALIGLDALDQRAIDKA-----MIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNA- 139 (425)
T ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHHH-----HHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCc-
Confidence 333334 468999999999875544321 11111100 0111247999999999999999999999999999641
Q ss_pred ccccccccceeEEEEeecCCC------CHHHH---------HHHHHHhhhcCCCEEEE---------eccCC----CChH
Q 041113 634 DEEISKRSTSIKICALIDSNK------SPVEV---------ASIATTLVEEGFTAIKL---------KVARR----ADPI 685 (983)
Q Consensus 634 ~~~~~~~~~~i~~~~~~~~~~------~~~~~---------~~~~~~~~~~G~~~~Ki---------Kig~~----~~~~ 685 (983)
.+.++|+|..++++. +..+. .+++.+....+|+.+|. ++|.. .+.+
T Consensus 140 ------~~~pvp~~n~i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~ 213 (425)
T PRK00077 140 ------KVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLK 213 (425)
T ss_pred ------ccccceeEEEEcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCcc
Confidence 124577776543211 11121 14444555567888886 34521 2457
Q ss_pred HHHHHHHHHHHHc-------CCCcEEEEEcC-------CC-------CCHHHHHHH-HhhcccCCCceeecCCC--ChHH
Q 041113 686 KDAEVIQEVRKKV-------GHRIELRVDAN-------RN-------WTYQEALEF-GFLIKDCDLQYIEEPVQ--NEED 741 (983)
Q Consensus 686 ~d~~~v~~vr~~~-------g~~~~l~vDaN-------~~-------~~~~~a~~~-~~~l~~~~i~~iEeP~~--~~~~ 741 (983)
.|.++|+++|+++ |+++.|+||+| +. ||.++++++ .+.+++|++.|||||++ |+++
T Consensus 214 ~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g 293 (425)
T PRK00077 214 SNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDENDWEG 293 (425)
T ss_pred chHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHH
Confidence 8999999999996 99999999993 44 466777766 44557799999999998 7899
Q ss_pred HHHHHhhc--CCcEEeCCCcc-CcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe-CCCCch
Q 041113 742 IIKYCEES--GLPVALDETID-KFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV-SAAFES 816 (983)
Q Consensus 742 ~~~l~~~~--~ipIa~dEs~~-~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~-~~~~es 816 (983)
+++|++++ .+||++||+.. +.. .+..+++. .++++++|++++||||++++++++|+++|+.+++ |++.||
T Consensus 294 ~~~L~~~~~~~ipI~gdE~~~t~~~-----~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt 368 (425)
T PRK00077 294 WKLLTEKLGDKVQLVGDDLFVTNTK-----RLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGET 368 (425)
T ss_pred HHHHHHhcCCCCeEEcCCCccCCHH-----HHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcc
Confidence 99999998 69999999854 443 46666654 4799999999999999999999999999999887 555699
Q ss_pred HHHHHHHHHHHhhch
Q 041113 817 GLGLSAYIIFSSYLE 831 (983)
Q Consensus 817 ~ig~~a~~~laa~~~ 831 (983)
+.+..+.+|++...+
T Consensus 369 ~d~~~a~lava~~~~ 383 (425)
T PRK00077 369 EDTTIADLAVATNAG 383 (425)
T ss_pred hHHHHHHHHHHhCCc
Confidence 999999999988765
No 91
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=3.3e-33 Score=322.99 Aligned_cols=292 Identities=29% Similarity=0.432 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEcCCCCCCCCCCCCcccccccccccccccCCCCccccccccccccccccchhhHHHHHH
Q 041113 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLE 81 (983)
Q Consensus 2 i~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (983)
+++.|++|++.|++++||||||+||+|++........+ ...|... +.... .. +...++++.++++++
T Consensus 140 ~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~------~~~~~~~--~~~~~---~~--~~~~~~~~~i~~~~~ 206 (432)
T TIGR00173 140 LRSTVDRAVAQAQGPPPGPVHINVPFREPLYPDPLLQP------LQPWLRS--GVPTV---TT--GPPVLDPESLDELWD 206 (432)
T ss_pred HHHHHHHHHHHhhCCCCCCEEEeCCCCCCCCCCCcccc------ccccccc--ccccc---cC--CCCCCChhhHHHHHH
Confidence 67899999999999999999999999975433210000 0001000 00000 00 112345668999999
Q ss_pred HHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh-hhccCccccccCC
Q 041113 82 LVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD-HALLSESVKDWIQ 160 (983)
Q Consensus 82 ~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g-~~~~~~~~~~~~~ 160 (983)
+|++||||+||+|+|+...+.+++.+|+|++++||++|++ | ||.+ ++| ++ +|.++ ..++...++.+ +
T Consensus 207 ~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~-~------~~~~-~~~-~~--~G~~~~~~~~~~~~~~~-~ 274 (432)
T TIGR00173 207 RLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADPL-S------GLRG-GPH-LV--IDHYDLLLANPELREEL-Q 274 (432)
T ss_pred HHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCC-C------CCCC-CCC-CC--cCHHHHHhcCCchhhhC-C
Confidence 9999999999999998754678999999999999999998 5 7999 778 75 67775 45555565666 9
Q ss_pred CCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccCCCCChhHHHHHHHHHH
Q 041113 161 FDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDM 240 (983)
Q Consensus 161 aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~~~~~~~w~~~~~~~~~ 240 (983)
||+||+||+++.+..+..|... ++.++||||.|+..++++++.++.|++|++.++++|.+.+.. ....|.+.+.+...
T Consensus 275 aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~~-~~~~~~~~~~~~~~ 352 (432)
T TIGR00173 275 PDLVIRFGGPPVSKRLRQWLAR-QPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLKN-PDAAWLDRWLEAEA 352 (432)
T ss_pred CCEEEEeCCCcchhHHHHHHhC-CCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccCC-CChHHHHHHHHHHH
Confidence 9999999999988777766322 235799999999999999999999999999999999888754 34467777766554
Q ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC
Q 041113 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR 320 (983)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 320 (983)
.+........ .+.++++.+++++|++.+|++.+|+.|+|++++... .++.....|++|+ .+.++
T Consensus 353 ~~~~~~~~~~-~~~~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~----~~~~~~~~~~~~~-----------~~~g~ 416 (432)
T TIGR00173 353 KAREALREVL-AEEPLSELSLARALSQLLPEGAALFVGNSMPIRDLD----TFAQPPDKPIRVF-----------ANRGA 416 (432)
T ss_pred HHHHHHHHHh-ccCCccHHHHHHHHHHhCCCCCeEEEECCHHHHHHH----hcCCcCCCCceEE-----------ecCch
Confidence 4433222211 235699999999999999999999999999555443 3433211455554 35788
Q ss_pred CCCCccchHHHHHhhhhc
Q 041113 321 GASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA 338 (983)
|+||+ |+|+|||+++.
T Consensus 417 g~mG~--glp~aiGa~~~ 432 (432)
T TIGR00173 417 SGIDG--TLSTALGIALA 432 (432)
T ss_pred hhHHH--HHHHHHHhhcC
Confidence 99999 99999999873
No 92
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.1e-32 Score=313.82 Aligned_cols=288 Identities=20% Similarity=0.186 Sum_probs=207.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHHHHHH-HHHHhHhccCcccccccccccCchh
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSS 586 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~ 586 (983)
++++.|+|+|++|..|++++.... |.+..+....+.+ +.+.|.|+|+++.+...++..+
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l--- 91 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIM--- 91 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH---
Confidence 688999999999999999864321 1111223333334 4589999999998765544321
Q ss_pred hhhhhcCCCCCc-chhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEE--EeecCC------CCHH
Q 041113 587 WIWSTLGIPACE-IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKIC--ALIDSN------KSPV 657 (983)
Q Consensus 587 ~~~~~~~~~~~~-~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~--~~~~~~------~~~~ 657 (983)
....+..... ....|++|||||+||+.||.+|+|||+||||.. ++++|++ ..++++ .+.+
T Consensus 92 --~~~d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~---------~~~lPvp~~n~i~GG~~a~~~~~~q 160 (425)
T TIGR01060 92 --IELDGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKN---------AYVLPVPMMNIINGGAHADNNLDFQ 160 (425)
T ss_pred --HhcCCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCC---------CCceeeEEEEeecccccccCccCHH
Confidence 1111111111 234799999999999999999999999999965 3455554 332211 1344
Q ss_pred HHH---------HHHHHhhhcCCCEEE--Ee-------ccCC----CChH---HH----HHHHHHHHHHcCCCcEEEEEc
Q 041113 658 EVA---------SIATTLVEEGFTAIK--LK-------VARR----ADPI---KD----AEVIQEVRKKVGHRIELRVDA 708 (983)
Q Consensus 658 ~~~---------~~~~~~~~~G~~~~K--iK-------ig~~----~~~~---~d----~~~v~~vr~~~g~~~~l~vDa 708 (983)
++. +++.+....||+++| +| +|.. .+.+ ++ .+.+++++..+|+++.|++|+
T Consensus 161 e~~i~p~~a~~~~e~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~ 240 (425)
T TIGR01060 161 EFMIMPVGAKSFREALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDC 240 (425)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEc
Confidence 432 333333347899999 44 4520 1112 22 344555555689999999999
Q ss_pred CCC------------------CCHHHHHHHHhh-cccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccC-cCC
Q 041113 709 NRN------------------WTYQEALEFGFL-IKDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDK-FQK 764 (983)
Q Consensus 709 N~~------------------~~~~~a~~~~~~-l~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~-~~~ 764 (983)
|.+ ||.++++++++. +++|++.|||||++ |++++++|++++ ++||++||+..+ ..
T Consensus 241 aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~- 319 (425)
T TIGR01060 241 AASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTE- 319 (425)
T ss_pred cccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHH-
Confidence 732 466799999995 68899999999998 789999999999 899999998654 44
Q ss_pred ChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 765 DPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 765 ~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
.+..+++. .+|++++|++++||||++++++++|+++|+.++++|. .||+++.++.+|++...+
T Consensus 320 ----~~~~~i~~~a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~ 384 (425)
T TIGR01060 320 ----ILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAG 384 (425)
T ss_pred ----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcC
Confidence 36666654 4799999999999999999999999999999777666 799999999999998765
No 93
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=2.6e-32 Score=308.96 Aligned_cols=290 Identities=18% Similarity=0.221 Sum_probs=215.4
Q ss_pred eeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHHHHHHH-HHHHhHhccCcccccccccccCchh
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLDAEEQL-RFLLHFMTGAKISYFLPLLKGSFSS 586 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~ 586 (983)
++++.|+|+|++|.+|+|++.... |.++++......+ ..+.|.|+|+++.+...+..
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~----- 87 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDK----- 87 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHH-----
Confidence 788999999999999999975421 2344455554555 46889999999887543322
Q ss_pred hhhhhcCCC-CCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC----C--C----
Q 041113 587 WIWSTLGIP-ACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN----K--S---- 655 (983)
Q Consensus 587 ~~~~~~~~~-~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~----~--~---- 655 (983)
.+....+.. ......+|++|||||+||+.||.+|+|||++|||... .+-++|+|..+.++ . +
T Consensus 88 ~l~~~dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~-------~~lpvp~~nvi~GG~ha~~~~~iqe~ 160 (408)
T cd03313 88 LLIELDGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAA-------YVLPVPMFNVINGGAHAGNKLDFQEF 160 (408)
T ss_pred HHHHhcCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCC-------cccceeeEEEecCcccccCccccccc
Confidence 111111111 1122257999999999999999999999999999641 12345555433211 0 1
Q ss_pred ---H--HHHHHHHHHhhhcCCCEEEE-----------eccCC----CChHHHHHHHHHHHHHc-------CCCcEEEEEc
Q 041113 656 ---P--VEVASIATTLVEEGFTAIKL-----------KVARR----ADPIKDAEVIQEVRKKV-------GHRIELRVDA 708 (983)
Q Consensus 656 ---~--~~~~~~~~~~~~~G~~~~Ki-----------Kig~~----~~~~~d~~~v~~vr~~~-------g~~~~l~vDa 708 (983)
| ++..+++.++...||+.+|- ++|.. .+.+.|.++|+.+|+++ |+++.|++|+
T Consensus 161 ~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~ 240 (408)
T cd03313 161 MIVPVGAPSFSEALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDV 240 (408)
T ss_pred cccccCccCHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEeh
Confidence 1 22335667777889999883 33310 24578999999999999 8899999999
Q ss_pred -----------------CCCCCHHHHHHHHhhc-ccCCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCc-cCcCCC
Q 041113 709 -----------------NRNWTYQEALEFGFLI-KDCDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETI-DKFQKD 765 (983)
Q Consensus 709 -----------------N~~~~~~~a~~~~~~l-~~~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~-~~~~~~ 765 (983)
|+.||+++++++++.| ++|++.|||||++ |++++++|++++ ++||++||+. .++.
T Consensus 241 aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~-- 318 (408)
T cd03313 241 AASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPE-- 318 (408)
T ss_pred hhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHH--
Confidence 4557889999988886 6799999999998 889999999997 8999999975 4554
Q ss_pred hHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC-CchHHHHHHHHHHHhhch
Q 041113 766 PLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA-FESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 766 ~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~-~es~ig~~a~~~laa~~~ 831 (983)
.+..+++. .++++++|++++||+|++++++++|+++|++++++|. .|+.....+.+|++...+
T Consensus 319 ---~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 319 ---RLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred ---HHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 35666654 4799999999999999999999999999999988554 489888888777776654
No 94
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=6.7e-33 Score=284.51 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=154.7
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
+++++.++++.|++.+|++++++.|+|+ +..|..+++++ .+|++|+ .++++|+||| ++|+||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lpaai 63 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGN----ICSVANSYLRF-EKPRSFI-----------APLSFGNCGY--ALPAII 63 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcH----HHHHHHHhcCc-CCCCeEE-----------cCCCCccccc--HHHHHH
Confidence 4689999999999999999999999998 66777777664 5565554 3578899999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISIQ 411 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df~ 411 (983)
|+++|. +++|||++|||||+|++|||+|+++ |++|+++||+||++|++++..+.. ....++.++ .+++||+
T Consensus 64 Ga~la~p~r~vv~i~GDG~f~m~~~eL~Ta~~--~~lpvi~vV~NN~~yg~~~~~q~~-----~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 64 GAKAAAPDRPVVAIAGDGAWGMSMMEIMTAVR--HKLPVTAVVFRNRQWGAEKKNQVD-----FYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHhCCCCcEEEEEcchHHhccHHHHHHHHH--hCCCeEEEEEECchhHHHHHHHHH-----HcCCCcccccCCCCCHH
Confidence 999999 9999999999999999999999999 999999999999999998753211 011112222 2469999
Q ss_pred HHHHHcCCceeeeCCHHHHHHHHHhhhc---cCCCEEEEEEcCcccchHHHHHH
Q 041113 412 NLCLAHGLNHVQVKTKVELEEALSMSQH---LGTDRVIEVESCIDANATFHSML 462 (983)
Q Consensus 412 ~la~a~G~~~~~v~~~~eL~~aL~~a~~---~~~p~lIeV~~~~~~~~~~~~~~ 462 (983)
++|++||+++.+|++++||+++|+++++ .++|+||||.++++...+..+.+
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev~v~~~~~~~~~~~~ 190 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEIVCDQELGDPFRRDA 190 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEEEeCcccCCchHHHh
Confidence 9999999999999999999999999987 89999999999988865544433
No 95
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.98 E-value=1.3e-32 Score=284.35 Aligned_cols=183 Identities=17% Similarity=0.203 Sum_probs=150.4
Q ss_pred cCCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHH
Q 041113 253 DYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 253 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+.++++.+++++|++.+|++++++.|.|+ +.+|..+++++ .+|++|+ .++++|+||| ++|+|
T Consensus 5 ~~~l~~~~~~~~l~~~l~~d~iiv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~GsmG~--~lpaa 66 (202)
T cd02006 5 DVPIKPQRVYEEMNKAFGRDVRYVTTIGL----SQIAGAQMLHV-YKPRHWI-----------NCGQAGPLGW--TVPAA 66 (202)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcH----HHHHHHHhcCc-CCCCeEE-----------ccCCccchhh--hhHHH
Confidence 34699999999999999999999999998 77777777664 5555554 3577899999 99999
Q ss_pred Hhhhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC---cccccccc---ccC
Q 041113 333 IGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE---PRILDQYF---YTT 405 (983)
Q Consensus 333 iGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~---~~~~~~~~---~~~ 405 (983)
|||++|+ +++||||+|||||+|++|||+|++| |++|+++||+||++|+++++.+...... ...+.... ...
T Consensus 67 iGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~--~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd02006 67 LGVAAADPDRQVVALSGDYDFQFMIEELAVGAQ--HRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGG 144 (202)
T ss_pred HhHHhhCCCCeEEEEEeChHhhccHHHHHHHHH--hCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCC
Confidence 9999999 9999999999999999999999999 9999999999999999987532110000 00000000 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCcccc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCIDAN 455 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~~~~ 455 (983)
+++||.++|++||+++.+|++.+||+++|+++++ .++|+||||.+++.+.
T Consensus 145 ~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~ 198 (202)
T cd02006 145 YGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVTN 198 (202)
T ss_pred CCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEeccccc
Confidence 3699999999999999999999999999999984 6899999999998765
No 96
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.97 E-value=1.6e-31 Score=269.39 Aligned_cols=174 Identities=36% Similarity=0.463 Sum_probs=142.9
Q ss_pred CHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhh
Q 041113 257 TEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFA 336 (983)
Q Consensus 257 ~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaa 336 (983)
+...++++|++.+|++++++.|+|+ +..|...+++..+.|++|+ ...++|+||+ ++|++||++
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~----~~~~~~~~~~~~~~~~~~~-----------~~~g~g~mG~--~l~~aiGa~ 64 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSM----PIRDLDLFALPSDKTVRVF-----------ANRGASGIDG--TLSTALGIA 64 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCH----HHHHHHHccCccCCCceEE-----------ecCCccchhh--HHHHHHHHH
Confidence 4567899999999999999999999 5556555554213444443 3577899999 999999999
Q ss_pred hccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 337 VGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 337 lA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
+|.+++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.... ...+...+..++++||.++|++
T Consensus 65 la~~~~Vv~i~GDGsf~m~~~eL~ta~~--~~l~v~ivVlNN~~~g~~~~~~~~~~--~~~~~~~~~~~~~~d~~~lA~a 140 (175)
T cd02009 65 LATDKPTVLLTGDLSFLHDLNGLLLGKQ--EPLNLTIVVINNNGGGIFSLLPQASF--EDEFERLFGTPQGLDFEHLAKA 140 (175)
T ss_pred hcCCCCEEEEEehHHHHHhHHHHHhccc--cCCCeEEEEEECCCCchheeccCCcc--cchhhhhhcCCCCCCHHHHHHH
Confidence 9988999999999999999999999998 99999999999999999876532111 0112222222247999999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
||+++.+|++++||+++|+++++.++|+||||.++
T Consensus 141 ~G~~~~~v~~~~el~~al~~a~~~~~p~lIev~v~ 175 (175)
T cd02009 141 YGLEYRRVSSLDELEQALESALAQDGPHVIEVKTD 175 (175)
T ss_pred cCCCeeeCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999999999999999999985
No 97
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.97 E-value=2.1e-31 Score=268.57 Aligned_cols=171 Identities=14% Similarity=0.217 Sum_probs=144.9
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
.+++++|++.+|+++++++|.|. +..|..++++. .+|++|+ .++++|+||| ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~~~ii~~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lp~aiGa~la 63 (177)
T cd02010 2 QRIVHDLRAVMGDDDIVLLDVGA----HKIWMARYYRT-YAPNTCL-----------ISNGLATMGV--ALPGAIGAKLV 63 (177)
T ss_pred HHHHHHHHHHCCCCcEEEecCcH----HHHHHHHhCCc-CCCCCEE-----------eCCCChhhhh--HHHHHHHHHHh
Confidence 56899999999999999999998 66777766664 4444443 3578899999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc-cCCCCCHHHHHHH
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY-TTHNISIQNLCLA 416 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~df~~la~a 416 (983)
+ +++||+|+|||||+|++|||+|++| |++|+++||+||++|++++..+.. .+.+... +..++||.++|++
T Consensus 64 ~~~~~vv~i~GDG~f~m~~~eL~ta~~--~~l~vi~vV~NN~~~g~~~~~~~~------~~~~~~~~~~~~~d~~~~a~a 135 (177)
T cd02010 64 YPDRKVVAVSGDGGFMMNSQELETAVR--LKIPLVVLIWNDNGYGLIKWKQEK------EYGRDSGVDFGNPDFVKYAES 135 (177)
T ss_pred CCCCcEEEEEcchHHHhHHHHHHHHHH--HCCCeEEEEEECCcchHHHHHHHH------hcCCcccCcCCCCCHHHHHHH
Confidence 9 8999999999999999999999999 999999999999999998653211 1111122 2246899999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
||+++.+|++++||+++|+++++.++|+||||.+++.+.
T Consensus 136 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~ 174 (177)
T cd02010 136 FGAKGYRIESADDLLPVLERALAADGVHVIDCPVDYSEN 174 (177)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeccccc
Confidence 999999999999999999999999999999999987543
No 98
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.97 E-value=1.4e-31 Score=276.71 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=150.4
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
.+++++|++.+|++++++.|.|+ +.+|..+++++ ++|++|+ .++++|+||| |+|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~----~~~~~~~~~~~-~~~~~~~-----------~~~~~gsmG~--~lpaAiGa~la 63 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGS----LPGDLHKLWRA-RTPGGYH-----------LEYGYSCMGY--EIAAGLGAKLA 63 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCc----chHHHHHhCCc-CCCCcEE-----------cCCCcchhhh--HHHHHHHHHHh
Confidence 35789999999999999999998 66777766664 5555554 3578899999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccc-----------ccCC
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYF-----------YTTH 406 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~-----------~~~~ 406 (983)
+ +++||+++|||+|+|+.+||+|+++ |++|+++||+||++|++++.++..... ..+...+ ...+
T Consensus 64 ~p~~~vv~i~GDGsf~m~~~eL~Ta~~--~~lpv~ivV~NN~~~g~~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 139 (205)
T cd02003 64 KPDREVYVLVGDGSYLMLHSEIVTAVQ--EGLKIIIVLFDNHGFGCINNLQESTGS--GSFGTEFRDRDQESGQLDGALL 139 (205)
T ss_pred CCCCeEEEEEccchhhccHHHHHHHHH--cCCCCEEEEEECCccHHHHHHHHHhcC--ccccchhcccccccccccCCCC
Confidence 9 9999999999999999999999999 999999999999999999864321100 0111111 1235
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHH
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLR 463 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~ 463 (983)
++||.++|++||+++.+|++++||+++|+++++.++|+||||.+++++..+..+.++
T Consensus 140 ~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV~v~~~~~~~~~~~~~ 196 (205)
T cd02003 140 PVDFAANARSLGARVEKVKTIEELKAALAKAKASDRTTVIVIKTDPKSMTPGYGSWW 196 (205)
T ss_pred CCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEEeeccccCCCCCCeE
Confidence 699999999999999999999999999999999999999999999877665554443
No 99
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.97 E-value=5.2e-31 Score=269.01 Aligned_cols=175 Identities=22% Similarity=0.272 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++.+++++|++.+|++++++.|+|. +..|..+++.+ +.|++|+ .++++|+||| ++|+|||+
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~lp~aiGa 62 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQ----HQMWAAQYYRF-KKPRSWL-----------TSGGLGTMGF--GLPAAIGA 62 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcH----HHHHHHHhccc-CCCCeEE-----------eCCCccchhc--hHHHHHHH
Confidence 46788999999999999999999998 56676666664 4555544 3578899999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc--cCCCCCHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY--TTHNISIQN 412 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~--~~~~~df~~ 412 (983)
++|. +++||+++|||+|+|++|||+|+++ |++|+++||+||++|++++..+... ..++... ..+++||.+
T Consensus 63 ~la~~~~~vv~i~GDG~f~~~~~eL~ta~~--~~lpi~ivV~nN~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~ 135 (186)
T cd02015 63 KVARPDKTVICIDGDGSFQMNIQELATAAQ--YNLPVKIVILNNGSLGMVRQWQELF-----YEGRYSHTTLDSNPDFVK 135 (186)
T ss_pred HHhCCCCeEEEEEcccHHhccHHHHHHHHH--hCCCeEEEEEECCccHHHHHHHHHH-----cCCceeeccCCCCCCHHH
Confidence 9999 8999999999999999999999999 9999999999999999987642110 0111111 124689999
Q ss_pred HHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 413 LCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 413 la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+|++||+++.+|++.+||+++|+++++.++|+||||.+++++.
T Consensus 136 ~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~~~~ 178 (186)
T cd02015 136 LAEAYGIKGLRVEKPEELEAALKEALASDGPVLLDVLVDPEEN 178 (186)
T ss_pred HHHHCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 9999999999999999999999999988999999999997654
No 100
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.97 E-value=1.7e-30 Score=263.43 Aligned_cols=175 Identities=22% Similarity=0.208 Sum_probs=147.9
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
++++.++++.|++.++++++++.|.|+ .. |...++.. .+|++|+ .++++|+||+ ++|+|+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~----~~-~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~l~~aiG 61 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGT----SW-FGALDLKL-PKGTRFI-----------SQPLWGSIGY--SVPAALG 61 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCch----HH-HhhhhccC-CCCCEEE-----------eccchhhHhh--hHHHHHH
Confidence 478899999999999999999999998 32 44444443 4444443 3578899999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
+++|. +++|++++|||+|+|++|||+|+++ |++|+++||+||++|++++..+... ..+....++||.++
T Consensus 62 aala~~~~~vv~i~GDG~f~~~~~el~ta~~--~~~p~~ivV~nN~~~~~~~~~~~~~--------~~~~~~~~~d~~~i 131 (183)
T cd02005 62 AALAAPDRRVILLVGDGSFQMTVQELSTMIR--YGLNPIIFLINNDGYTIERAIHGPE--------ASYNDIANWNYTKL 131 (183)
T ss_pred HHHhCCCCeEEEEECCchhhccHHHHHHHHH--hCCCCEEEEEECCCcEEEEEeccCC--------cCcccCCCCCHHHH
Confidence 99999 8999999999999999999999999 9999999999999999987643211 11122246899999
Q ss_pred HHHcC----CceeeeCCHHHHHHHHHhhhc-cCCCEEEEEEcCcccchHH
Q 041113 414 CLAHG----LNHVQVKTKVELEEALSMSQH-LGTDRVIEVESCIDANATF 458 (983)
Q Consensus 414 a~a~G----~~~~~v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~~~~~ 458 (983)
|++|| +++.+|++.+||+++|+++++ .++|+||||.++++++++.
T Consensus 132 a~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev~~~~~~~~~~ 181 (183)
T cd02005 132 PEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEVILPKDDAPEA 181 (183)
T ss_pred HHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEEEcCcccCCcc
Confidence 99999 799999999999999999998 8999999999999887754
No 101
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.96 E-value=1.1e-29 Score=256.01 Aligned_cols=171 Identities=23% Similarity=0.119 Sum_probs=142.8
Q ss_pred HHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhh
Q 041113 258 EPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337 (983)
Q Consensus 258 ~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaal 337 (983)
|.+++++|++.+|++++++.|+|. +..|..+++++ +.|++|+ .++++|+||+ ++|+|||+++
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~----~~~~~~~~~~~-~~p~~~~-----------~~~~~g~mG~--~lp~AiGa~l 62 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGN----TMDWARYILRP-RKPRHRL-----------DAGTFGTLGV--GLGYAIAAAL 62 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCch----HHHHHHHHccc-cCCCcEe-----------cCCCCCcccc--hHHHHHHHHH
Confidence 357899999999999999999998 66677666654 5555544 3578899999 9999999999
Q ss_pred cc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 338 GC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 338 A~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
|. +++|+|++|||+|+|+.+||+|+++ +++|+++||+||++|++++..+.... ..........+.+||.++|++
T Consensus 63 a~~~~~vv~i~GDG~f~~~~~el~ta~~--~~lpv~ivv~NN~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~la~a 137 (172)
T cd02004 63 ARPDKRVVLVEGDGAFGFSGMELETAVR--YNLPIVVVVGNNGGWYQGLDGQQLSY---GLGLPVTTLLPDTRYDLVAEA 137 (172)
T ss_pred hCCCCeEEEEEcchhhcCCHHHHHHHHH--cCCCEEEEEEECcccccchhhhhhhc---cCCCceeccCCCCCHHHHHHH
Confidence 99 8999999999999999999999999 99999999999999999976532110 000111112357999999999
Q ss_pred cCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcC
Q 041113 417 HGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 417 ~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~ 451 (983)
||+++.+|++.+||+++|+++++.++|.||||.++
T Consensus 138 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev~i~ 172 (172)
T cd02004 138 FGGKGELVTTPEELKPALKRALASGKPALINVIID 172 (172)
T ss_pred CCCeEEEECCHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999998899999999985
No 102
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.96 E-value=8.1e-30 Score=258.09 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
++++..++++|++.++++++++.|.|. +..|..+++.. .+|++|+ .++++|+||| ++|+|+|
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~~g~mG~--~~~~aiG 62 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGN----VTVWAARHLRM-NGKQRFI-----------LSGLLATMGN--GLPGAIA 62 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcH----HHHHHHHhccc-CCCCcEE-----------cCCCCchhhh--HHHHHHH
Confidence 367899999999999999999999998 56666666553 5555554 3578899999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc-CCCCCHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT-THNISIQN 412 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~df~~ 412 (983)
+++|. +++||+++|||||+|++|||+|+++ +++|+++||+||++|++++..+.. .....+.+ .+++||.+
T Consensus 63 a~~a~~~~~vv~i~GDG~f~~~~~el~t~~~--~~lp~~~iv~NN~~~~~~~~~~~~------~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 63 AKLAYPDRQVIALSGDGGFAMLMGDLITAVK--YNLPVIVVVFNNSDLGFIKWEQEV------MGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHhCCCCcEEEEEcchHHHhhHHHHHHHHH--hCCCcEEEEEECCchhHHHHHHHH------hcCCceeccCCCCCHHH
Confidence 99999 8999999999999999999999999 999999999999999998643110 11122232 24789999
Q ss_pred HHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 413 LCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 413 la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+|++||+++.++++++||+++|+++++.++|+||||.+++++
T Consensus 135 la~a~G~~~~~v~~~~el~~~l~~a~~~~~p~liev~~~~~~ 176 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEAALDEALAADGPVVIDVVTDPNE 176 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 999999999999999999999999999999999999998765
No 103
>PLN00191 enolase
Probab=99.96 E-value=3.6e-27 Score=266.62 Aligned_cols=300 Identities=13% Similarity=0.116 Sum_probs=212.6
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCC----------EEEEeecCcC-----cCcccHHH-
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGS----------VGYGEVAPLE-----IHKENLLD- 556 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~----------~G~GE~~~~~-----~~~~~~~~- 556 (983)
|+|++|+.+.+- .+. .+++|.|+|+|++|. +|++|+.-.. |.+..+..
T Consensus 26 ~~I~~v~~r~il--------dsr--------G~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~A 89 (457)
T PLN00191 26 ATITKVKARQII--------DSR--------GNPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKA 89 (457)
T ss_pred CeeeEEEEEEEE--------cCC--------CCeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHH
Confidence 699999998872 222 268899999999997 7888874321 22333333
Q ss_pred HHHHHHHHHhHhccCccccc---ccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc---CCC
Q 041113 557 AEEQLRFLLHFMTGAKISYF---LPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL---YPL 630 (983)
Q Consensus 557 ~~~~l~~~~~~l~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL---Gg~ 630 (983)
+......+.|.|+|.++.+. ..++...+.+.. .......|+.||++|+|++.|+..|+|||++| ||.
T Consensus 90 v~~v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~n-------k~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~ 162 (457)
T PLN00191 90 VKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPN-------KGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGN 162 (457)
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHccCCCC-------ccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCC
Confidence 33333568999999998763 222322221111 11234678999999999999999999999999 664
Q ss_pred CccccccccccceeEEEE--eecCC-------------------CCHHHHH-------HHHHHhhhc--CCCEEEEeccC
Q 041113 631 TEIDEEISKRSTSIKICA--LIDSN-------------------KSPVEVA-------SIATTLVEE--GFTAIKLKVAR 680 (983)
Q Consensus 631 ~~~~~~~~~~~~~i~~~~--~~~~~-------------------~~~~~~~-------~~~~~~~~~--G~~~~KiKig~ 680 (983)
. ...+|++. .++++ .+..+.+ ..+++.++. |.... .+|.
T Consensus 163 ~---------~~~lP~p~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~~--~vgd 231 (457)
T PLN00191 163 K---------KLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDAC--NVGD 231 (457)
T ss_pred C---------CccccceeEEeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcC--ccCC
Confidence 3 12344332 22111 1222211 111222211 33211 2332
Q ss_pred ----CCChHHHHHHHHHHHHHcC-----CCcEEEEEcCCC--------C---------------CHHHHHHHHhhc-ccC
Q 041113 681 ----RADPIKDAEVIQEVRKKVG-----HRIELRVDANRN--------W---------------TYQEALEFGFLI-KDC 727 (983)
Q Consensus 681 ----~~~~~~d~~~v~~vr~~~g-----~~~~l~vDaN~~--------~---------------~~~~a~~~~~~l-~~~ 727 (983)
.++.+.+.+.|+.++++++ +++.|.+|+..+ | |.++++++.+.| ++|
T Consensus 232 eGg~ap~~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y 311 (457)
T PLN00191 232 EGGFAPNIQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDY 311 (457)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcC
Confidence 1234567788888888876 679999998443 3 788999999996 559
Q ss_pred CCceeecCCC--ChHHHHHHHhhcCCcEEeCCCc-cCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHH
Q 041113 728 DLQYIEEPVQ--NEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQR 803 (983)
Q Consensus 728 ~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~-~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~ 803 (983)
++.|||||++ |++++++|+++..+||++||+. .++. .+..+++.+ ++++++|++++||++++++++++|++
T Consensus 312 ~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~-----~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~ 386 (457)
T PLN00191 312 PIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPK-----RVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKA 386 (457)
T ss_pred CcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHH-----HHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHH
Confidence 9999999998 8999999999999999999996 5554 355666544 79999999999999999999999999
Q ss_pred cCCcEEeCC-CCchHHHHHHHHHHHhhch
Q 041113 804 HGKMAVVSA-AFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 804 ~gi~~~~~~-~~es~ig~~a~~~laa~~~ 831 (983)
+|++++++| +.||+++.++.+|+++..+
T Consensus 387 ~G~~~~ishrsgET~d~~~Adlava~~~~ 415 (457)
T PLN00191 387 AGWGVMTSHRSGETEDSFIADLAVGLATG 415 (457)
T ss_pred CCCEEEeCCCCccchHHHHHHHHHHhCCC
Confidence 999999988 9999999999999999876
No 104
>PRK06163 hypothetical protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=249.08 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=137.1
Q ss_pred CCCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 254 YSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
..++..++++.|++.+++++++++|.|++. +.+|..+ ..|+ .++ .+|+||| |+|+||
T Consensus 11 ~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~--~~~~~~~-----~~~~----------~~~----~~GsMG~--glpaAi 67 (202)
T PRK06163 11 KVMNRFDLTCRLVAKLKDEEAVIGGIGNTN--FDLWAAG-----QRPQ----------NFY----MLGSMGL--AFPIAL 67 (202)
T ss_pred CCcCHHHHHHHHHHhcCCCCEEEECCCccH--HHHHHhh-----cCCC----------CeE----eeccccc--HHHHHH
Confidence 468889999999999999999999999622 2345542 1222 222 3799999 999999
Q ss_pred hhhhcc-CceEEEEEccchhhhccchHHHHHhhcc-CCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHH
Q 041113 334 GFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRMK-RKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQ 411 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~-~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~ 411 (983)
|+++|+ +++||||+|||||+|++|||+|+++ | ++|+++||+||++|++.... . +.+.+++||.
T Consensus 68 GaalA~p~r~Vv~i~GDG~f~m~~~eL~Ta~~--~~~lpi~ivV~NN~~yg~~~~~--------~-----~~~~~~~Df~ 132 (202)
T PRK06163 68 GVALAQPKRRVIALEGDGSLLMQLGALGTIAA--LAPKNLTIIVMDNGVYQITGGQ--------P-----TLTSQTVDVV 132 (202)
T ss_pred HHHHhCCCCeEEEEEcchHHHHHHHHHHHHHH--hcCCCeEEEEEcCCchhhcCCc--------c-----CCCCCCCCHH
Confidence 999999 9999999999999999999999987 6 68999999999999986321 0 1122569999
Q ss_pred HHHHHcCCc-eeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 412 NLCLAHGLN-HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 412 ~la~a~G~~-~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
++|++||++ +++|++.+||+++|+++++.++|.||||.+++...
T Consensus 133 ~lA~a~G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 133 AIARGAGLENSHWAADEAHFEALVDQALSGPGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHCCCceEEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCCCC
Confidence 999999998 68999999999999999999999999999997654
No 105
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.95 E-value=1e-27 Score=243.66 Aligned_cols=174 Identities=22% Similarity=0.222 Sum_probs=139.9
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++.+++++|++.+|++++++.|.|. +..|...+++. ..|++|+ .+++ |+||+ ++|+|||+
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~----~~~~~~~~~~~-~~~~~~~-----------~~~~-g~mG~--~lp~aiGa 61 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVT----NGLPLRDQLPL-TRPGSYF-----------TLRG-GGLGW--GLPAAVGA 61 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCc----ccHHHHHhccc-CCCCCee-----------ccCC-ccccc--hHHHHHHH
Confidence 46788999999999999999999988 45566555543 4454443 3466 99999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccc---cCCCCCHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFY---TTHNISIQ 411 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~---~~~~~df~ 411 (983)
++|. +++|++++|||+|+|+.+||+|+++ +++|+++||+||++|++++..+...........+++. ..+.+||.
T Consensus 62 ala~~~~~vv~i~GDG~f~~~~~el~ta~~--~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 139 (178)
T cd02002 62 ALANPDRKVVAIIGDGSFMYTIQALWTAAR--YGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFA 139 (178)
T ss_pred HhcCCCCeEEEEEcCchhhccHHHHHHHHH--hCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence 9998 8999999999999999999999999 8999999999999999986542110000000001111 12468999
Q ss_pred HHHHHcCCceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 412 NLCLAHGLNHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 412 ~la~a~G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
++|++||+++.+|++.+||+++|+++.+.++|.||||.+
T Consensus 140 ~~a~a~G~~~~~v~~~~el~~al~~a~~~~~p~vi~v~v 178 (178)
T cd02002 140 AIAKAFGVEAERVETPEELDEALREALAEGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCceEEeCCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 999999999999999999999999999889999999975
No 106
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.95 E-value=2.8e-27 Score=232.95 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..+++.|.+.+ ++.+|+.|.|. +..|. +... ..|++ ++ . +|+||+ ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~----~~~~~--~~~~-~~~~~----------~~---~-~gsmG~--~lp~AiGa~~a 57 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGY----ASREL--YDVQ-DRDGH----------FY---M-LGSMGL--AGSIGLGLALG 57 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCH----hHHHH--HHhh-cCCCC----------EE---e-ecchhh--HHHHHHHHHhc
Confidence 35788999999 79999999998 33343 1110 23332 22 2 899999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhcc-CCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMK-RKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~-~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..++||+|+|||||+|+++||+|+++ | ++|+++||+||++|+++... .. . ..++||.++|++|
T Consensus 58 ~~~~Vv~i~GDG~f~m~~~el~t~~~--~~~~~i~~vV~nN~~~g~~~~~--------~~----~--~~~~d~~~lA~a~ 121 (157)
T cd02001 58 LSRKVIVVDGDGSLLMNPGVLLTAGE--FTPLNLILVVLDNRAYGSTGGQ--------PT----P--SSNVNLEAWAAAC 121 (157)
T ss_pred CCCcEEEEECchHHHhcccHHHHHHH--hcCCCEEEEEEeCccccccCCc--------CC----C--CCCCCHHHHHHHC
Confidence 88899999999999999999999998 8 59999999999999998531 00 1 1268999999999
Q ss_pred CCceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHVQVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|+++.+|++++||+++|+++++.++|.||||.++++
T Consensus 122 G~~~~~v~~~~el~~al~~a~~~~gp~vi~v~i~~~ 157 (157)
T cd02001 122 GYLVLSAPLLGGLGSEFAGLLATTGPTLLHAPIAPG 157 (157)
T ss_pred CCceEEcCCHHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 999999999999999999999999999999999763
No 107
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.94 E-value=7.3e-27 Score=235.21 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..++++|++.+| +++++.|.|.... .++ ...+.|++| + .+|+||+ |+|+|||+++|
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~--~~~-----~~~~~~~~~----------~----~~gsmG~--~lpaAiGa~la 57 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSK--ELY-----AIRDRPLNF----------Y----MLGSMGL--ASSIGLGLALA 57 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHH--HHH-----hhhcCCCCe----------e----ecccccc--HHHHHHHHHHc
Confidence 457899999998 9999999997321 111 100223222 2 2799999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhccC-CCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMKR-KPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~-lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
++++|||++|||+|+|++|||+|+++ |+ +|+++||+||++|++++.. . . .+.+++||+++|++|
T Consensus 58 ~~~~Vv~i~GDG~f~m~~~el~ta~~--~~~~pv~~vV~NN~~yg~~~~q--~------~-----~~~~~~d~~~lA~a~ 122 (181)
T TIGR03846 58 TDRTVIVIDGDGSLLMNLGVLPTIAA--ESPKNLILVILDNGAYGSTGNQ--P------T-----PASRRTDLELVAKAA 122 (181)
T ss_pred CCCcEEEEEcchHHHhhhhHHHHHHH--hCCCCeEEEEEeCCccccccCc--C------C-----CCCCCCCHHHHHHHC
Confidence 98999999999999999999999998 89 5999999999999998521 0 0 111468999999999
Q ss_pred CCceee-eCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 418 GLNHVQ-VKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 418 G~~~~~-v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++.+ |++++||+++|+ +++.++|+||||.+++++.
T Consensus 123 G~~~~~~v~~~~~l~~al~-a~~~~~p~li~v~~~~~~~ 160 (181)
T TIGR03846 123 GIRNVEKVADEEELRDALK-ALAMKGPTFIHVKVKPGNA 160 (181)
T ss_pred CCCeEEEeCCHHHHHHHHH-HHcCCCCEEEEEEeCCCCC
Confidence 999999 999999999997 8888999999999998764
No 108
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.94 E-value=3.3e-26 Score=221.47 Aligned_cols=294 Identities=26% Similarity=0.430 Sum_probs=223.7
Q ss_pred EEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-cCcccHHHHHHHHH-HHHhHhccCccc
Q 041113 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLLDAEEQLR-FLLHFMTGAKIS 574 (983)
Q Consensus 497 ~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-~~~~~~~~~~~~l~-~~~~~l~g~~~~ 574 (983)
+.++|.|.+|+..-....... ...|++++|++. +++..||||.+|.+ ++.|++++...+.. .+-.++.|..
T Consensus 3 sa~lYry~iPmdsgviLR~r~----Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~-- 75 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRR----LKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHD-- 75 (321)
T ss_pred ccceEEEecccccceeeehhh----hcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCC--
Confidence 567788888886654333322 245999999998 56789999999987 56677765544322 1222233321
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~ 654 (983)
+.....++..+|+.||+..+.+-.-. .+.+ ..-|. ..+
T Consensus 76 --------------------~~d~~~PSVAFGlScA~aEl~~~Lp~-------~~nY----------~~APL-----C~G 113 (321)
T COG1441 76 --------------------PLDPQMPSVAFGLSCALAELKGTLPE-------AANY----------RVAPL-----CTG 113 (321)
T ss_pred --------------------cccccCchhHHHHHHHHHHHhhhchh-------hcCc----------ccccC-----cCC
Confidence 11234678889999999888654211 1221 01121 457
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhccc---CCCce
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQY 731 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~---~~i~~ 731 (983)
+|+++......+ .|-+.-|+|+|. ...-+|=-.+..+-+++ ||..||+|||.+||+..|..|++-... ..|.|
T Consensus 114 DPDeL~~~L~~m--pGeKvAKvKVGl-YEa~RDGmivnllLEai-PDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaF 189 (321)
T COG1441 114 DPDELYLKLADM--PGEKVAKVKVGL-YEAVRDGMIVNLLLEAI-PDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAF 189 (321)
T ss_pred CHHHHHHHHhcC--Ccceeeeeeeee-eeccccchHHHHHHHhC-ccceeeecccccCChHHHHHHHHhcCHHHHHHHHH
Confidence 899888776665 699999999996 34456666777788898 999999999999999999999998865 36999
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
+||||...++-+++++.++|-||-|||+.... |..-.+.|+..|+|||+.+|++.++.++++.|+++|+..+++
T Consensus 190 LEEPCkt~aeSr~Fa~eTgIAIAWDEs~read------F~~e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 190 LEEPCKTRAESRAFARETGIAIAWDESLREAD------FAFEAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred HhcccCChHHHHHHHHhcCeeEeecchhcccc------cccccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEee
Confidence 99999988888999999999999999998742 443446788999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhchhhhhhhhhhccccCCCCCccCccchhcccccCC
Q 041113 812 AAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVT 864 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 864 (983)
++.||++|+...+.+|+.+. |+...|+||..++..-++
T Consensus 264 SSiESSLGLtQLARiA~~lt---------------P~tvPGLDTldLm~aQ~~ 301 (321)
T COG1441 264 SSIESSLGLTQLARIAAWLT---------------PNTVPGLDTLDLMQAQVV 301 (321)
T ss_pred chhhhhcCHHHHHHHHHHhC---------------CCCCCCcchHhHhHHhhc
Confidence 99999999999999998753 466678888766655443
No 109
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.94 E-value=4.8e-26 Score=231.04 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=131.4
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..++++|++.+|++.+++.|.|...+ .+|... ..|.. ..+..++ +.|+||| ++|+|||+++|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~--~~~~~~-----~~~~~-----~~~~~~~----~~g~mG~--~lpaAiGaala 63 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSR--ELFELR-----DRPGG-----GHAQDFL----TVGSMGH--ASQIALGIALA 63 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchH--HHHHhh-----cCCCC-----CccCcee----ecCcccc--HHHHHHHHHHh
Confidence 35789999999999999999998543 223211 01100 0012222 2399999 99999999999
Q ss_pred c-CceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHH
Q 041113 339 C-NKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLA 416 (983)
Q Consensus 339 ~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a 416 (983)
. +++||+|+|||+|+|+++||+|+++ |++ |+++||+||++|++++.. . ....++||.++|++
T Consensus 64 ~p~~~Vv~i~GDG~f~m~~~eL~ta~~--~~l~~i~ivV~NN~~yg~~~~~----------~----~~~~~~d~~~~A~a 127 (188)
T cd03371 64 RPDRKVVCIDGDGAALMHMGGLATIGG--LAPANLIHIVLNNGAHDSVGGQ----------P----TVSFDVSLPAIAKA 127 (188)
T ss_pred CCCCcEEEEeCCcHHHhhccHHHHHHH--cCCCCcEEEEEeCchhhccCCc----------C----CCCCCCCHHHHHHH
Confidence 9 8999999999999999999999998 886 799999999999997421 0 11246899999999
Q ss_pred cCCce-eeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 417 HGLNH-VQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 417 ~G~~~-~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
||+.+ .+|++.+||+++|+++++.++|+||||.+++...+
T Consensus 128 ~G~~~~~~v~~~~el~~al~~a~~~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 128 CGYRAVYEVPSLEELVAALAKALAADGPAFIEVKVRPGSRS 168 (188)
T ss_pred cCCceEEecCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCC
Confidence 99997 58999999999999999889999999999987653
No 110
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.94 E-value=6e-27 Score=231.50 Aligned_cols=146 Identities=28% Similarity=0.323 Sum_probs=118.7
Q ss_pred hhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHHh
Q 041113 286 LDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQ 364 (983)
Q Consensus 286 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~~ 364 (983)
+.+|..+++++ .+|++|+ .+.++|+||+ ++|+|+|+++|. +++||+++|||+|+|+++||+|+++
T Consensus 5 ~~~~~~~~~~~-~~p~~~~-----------~~~~~g~mG~--~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~ 70 (153)
T PF02775_consen 5 HTMWAAQYLRV-RRPRRFL-----------TSGGFGSMGY--ALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVR 70 (153)
T ss_dssp HHHHHHHHSCC-SSTTEEE-----------ESTTTT-TTT--HHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred hHHHHHHhcCc-CCCCeEE-----------cCCCccccCC--HHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhh
Confidence 66677666664 5555554 3578899999 999999999998 9999999999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCH--HHHHHHHHhhhccCC
Q 041113 365 RMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTK--VELEEALSMSQHLGT 442 (983)
Q Consensus 365 ~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~--~eL~~aL~~a~~~~~ 442 (983)
+++|+++||+||++|++++..+...... ..........+++||.++|++||+++.+|++. +||+++|+++++.++
T Consensus 71 --~~~~v~~vv~nN~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~~~g 147 (153)
T PF02775_consen 71 --YGLPVVIVVLNNGGYGMTGGQQTPFGGG-RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALESGG 147 (153)
T ss_dssp --TTSSEEEEEEESSBSHHHHHHHHHTTST-CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHHSSS
T ss_pred --ccceEEEEEEeCCcceEeccccccCcCc-ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999997742111100 00011111356899999999999999999999 999999999999999
Q ss_pred CEEEEE
Q 041113 443 DRVIEV 448 (983)
Q Consensus 443 p~lIeV 448 (983)
|+||||
T Consensus 148 p~vIeV 153 (153)
T PF02775_consen 148 PAVIEV 153 (153)
T ss_dssp EEEEEE
T ss_pred cEEEEc
Confidence 999998
No 111
>PTZ00081 enolase; Provisional
Probab=99.93 E-value=3.6e-24 Score=241.59 Aligned_cols=307 Identities=17% Similarity=0.150 Sum_probs=204.3
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCC----------EEEEeecCcC------cCcccHHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGS----------VGYGEVAPLE------IHKENLLD 556 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~----------~G~GE~~~~~------~~~~~~~~ 556 (983)
|||++|+.+.+- .+. .+++|.|+|+|++|. +|++|+.... |.+..+..
T Consensus 2 ~~I~~v~~r~i~--------dSr--------g~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~ 65 (439)
T PTZ00081 2 STIKSIKAREIL--------DSR--------GNPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLK 65 (439)
T ss_pred cEEEEEEEEEEe--------cCC--------CCceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHH
Confidence 799999988862 222 268899999999998 9999984321 32333333
Q ss_pred -HHHHHHHHHhHhccCccccc---cccccc-CchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc---C
Q 041113 557 -AEEQLRFLLHFMTGAKISYF---LPLLKG-SFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL---Y 628 (983)
Q Consensus 557 -~~~~l~~~~~~l~g~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL---G 628 (983)
+....+.+.|.|+|+++.+. ..++.. .+.+.. ..++....+...|+.|+++|+|++.|+..|+|||++| |
T Consensus 66 Av~~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n--~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~ 143 (439)
T PTZ00081 66 AVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKN--EWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLA 143 (439)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcc--cccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhc
Confidence 33333568999999998763 223322 211110 0011112234688999999999999999999999999 5
Q ss_pred CCCccccccccccceeEEEEeecCC-------------------CCHHHHH-------HHHHHhhhc--CCCEEEEeccC
Q 041113 629 PLTEIDEEISKRSTSIKICALIDSN-------------------KSPVEVA-------SIATTLVEE--GFTAIKLKVAR 680 (983)
Q Consensus 629 g~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~~~~-------~~~~~~~~~--G~~~~KiKig~ 680 (983)
|... . ...-++|++..++++ .+..+.+ ..+++.++. |... .-+|.
T Consensus 144 g~~~--~---~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgd 216 (439)
T PTZ00081 144 GKPT--D---KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGD 216 (439)
T ss_pred CCcc--C---CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence 5410 0 012446777644321 1111111 122222211 3321 12221
Q ss_pred ----CCChHHHHHHHHHHHHHcC-----CCcEEEEEcCC------------------------CCCHHHHHHHH-hhccc
Q 041113 681 ----RADPIKDAEVIQEVRKKVG-----HRIELRVDANR------------------------NWTYQEALEFG-FLIKD 726 (983)
Q Consensus 681 ----~~~~~~d~~~v~~vr~~~g-----~~~~l~vDaN~------------------------~~~~~~a~~~~-~~l~~ 726 (983)
.++.+.+.+.++.+++++. +++.|.+|+.. .+|.++.+++. +.+++
T Consensus 217 eGgfap~~~~~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~ 296 (439)
T PTZ00081 217 EGGFAPNIKDPEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKK 296 (439)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhc
Confidence 1133455666777777664 56888888733 25666666654 57899
Q ss_pred CCCceeecCCC--ChHHHHHHHhhc--CCcEEeCCCc-cCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHHHHH
Q 041113 727 CDLQYIEEPVQ--NEEDIIKYCEES--GLPVALDETI-DKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 727 ~~i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~-~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
|++.|||||++ |+++|++|++++ .+||++||.. .+.. .+...++. .++++++|++++||||++++++++
T Consensus 297 y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~-----~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~l 371 (439)
T PTZ00081 297 YPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPT-----RIKKAIEKKACNALLLKVNQIGTVTEAIEAAKL 371 (439)
T ss_pred CCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHH-----HHHHHHHhCCCCEEEeccccccCHHHHHHHHHH
Confidence 99999999998 899999999999 8999999985 4443 35566654 479999999999999999999999
Q ss_pred HHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 801 AQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 801 A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
|+++|+.++++|.. ||- -...+|||.++.
T Consensus 372 A~~~Gi~~iishrsgETe--d~~iadLAVa~~ 401 (439)
T PTZ00081 372 AQKNGWGVMVSHRSGETE--DTFIADLVVGLG 401 (439)
T ss_pred HHHcCCcEEEeCCCchhH--HHHHHHHHHHcC
Confidence 99999999998887 655 456668887765
No 112
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.93 E-value=1.7e-25 Score=226.39 Aligned_cols=163 Identities=21% Similarity=0.196 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
....-++++|++.+|++.+|+.|.|. +.+|... | ... ..++|+||+ ++|+|+|+
T Consensus 10 c~~~~~~~~l~~~l~~~~iv~~D~G~----~~~~~~~-------~----------~~~---~~~~g~mG~--gl~~AiGa 63 (178)
T cd02008 10 CPHRPSFYALRKAFKKDSIVSGDIGC----YTLGALP-------P----------LNA---IDTCTCMGA--SIGVAIGM 63 (178)
T ss_pred CCChHHHHHHHHHhcCCeEEecCcCc----ccccccC-------C----------hhh---ccccccCcc--HHHHHhhH
Confidence 45567899999999999999999998 5556532 1 111 136899999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
++|. +++||+|+|||+|+|+ ++||.|+++ |++|+++||+||++|++++..+... ..+ .......++||+++
T Consensus 64 ~la~p~~~Vv~i~GDG~f~~~g~~eL~ta~~--~~l~i~vvV~nN~~~g~~~~~~~~~----~~~-~~~~~~~~~d~~~~ 136 (178)
T cd02008 64 AKASEDKKVVAVIGDSTFFHSGILGLINAVY--NKANITVVILDNRTTAMTGGQPHPG----TGK-TLTEPTTVIDIEAL 136 (178)
T ss_pred HhhCCCCCEEEEecChHHhhccHHHHHHHHH--cCCCEEEEEECCcceeccCCCCCCC----Ccc-cccCCCCccCHHHH
Confidence 9999 9999999999999999 699999998 9999999999999999987532211 000 11122246899999
Q ss_pred HHHcCCceeeeCCHHHHH---HHHHhhhccCCCEEEEEEcC
Q 041113 414 CLAHGLNHVQVKTKVELE---EALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 414 a~a~G~~~~~v~~~~eL~---~aL~~a~~~~~p~lIeV~~~ 451 (983)
|++||+++.+|++.+||+ ++|+++++.++|.||+|...
T Consensus 137 a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 137 VRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred HHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 999999999999988888 88899988899999999753
No 113
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.92 E-value=7.3e-25 Score=223.83 Aligned_cols=165 Identities=16% Similarity=0.076 Sum_probs=126.2
Q ss_pred HHHHHHHh--hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhh
Q 041113 260 HVAHELSR--ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337 (983)
Q Consensus 260 ~~~~~l~~--~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaal 337 (983)
.+.+++.+ ..|++++++.|.|. + .|..++++ ....+|+||+ ++|+|||+++
T Consensus 13 ~~~~~~~~~~~~~~d~ii~~D~G~----~-~~~~~~~~--------------------~~~~~g~mG~--glpaAiGa~l 65 (193)
T cd03375 13 ALAKALAELGIDPEKVVVVSGIGC----S-SRLPYYFN--------------------TYGFHTLHGR--ALAVATGVKL 65 (193)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCh----h-ceehhhcc--------------------ccchhhhhcc--HHHHHHHHHH
Confidence 34444443 24778899999998 3 34433322 1234599999 9999999999
Q ss_pred cc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc-CCCCCHHHH
Q 041113 338 GC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT-THNISIQNL 413 (983)
Q Consensus 338 A~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~df~~l 413 (983)
|+ +++||+|+|||| |+|++|||+|+++ |++|+++||+||++|++++..+... ..........++. .+.+||.++
T Consensus 66 a~p~r~Vv~i~GDGs~f~m~~~eL~ta~~--~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i 143 (193)
T cd03375 66 ANPDLTVIVVSGDGDLAAIGGNHFIHAAR--RNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLAL 143 (193)
T ss_pred hCCCCeEEEEeccchHhhccHHHHHHHHH--hCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHH
Confidence 99 999999999999 6899999999999 9999999999999999997532111 0000000111111 235899999
Q ss_pred HHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 414 CLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 414 a~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|++||+++. +|++++||+++|+++++.++|+||||.++.-
T Consensus 144 A~a~G~~~~~~~~v~~~~el~~al~~al~~~gp~vIev~~~C~ 186 (193)
T cd03375 144 ALAAGATFVARGFSGDIKQLKEIIKKAIQHKGFSFVEVLSPCP 186 (193)
T ss_pred HHHCCCCEEEEEecCCHHHHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999984 7999999999999999999999999998754
No 114
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.92 E-value=9.2e-25 Score=220.25 Aligned_cols=156 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred HHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhc
Q 041113 259 PHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVG 338 (983)
Q Consensus 259 ~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA 338 (983)
..+++.|++.+| +++++.|.|+. ..+.... . ..|++ ++ .+|+||+ ++|+|+|+++|
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~----~~~~~~~-~--~~~~~----------~~----~~g~mG~--~lp~AiGaala 57 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFP----SKELYAA-G--DRPLN----------FY----MLGSMGL--ASSIGLGLALA 57 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHh----HHHHHHc-c--Ccccc----------cc----cccchhh--HHHHHHHHHhc
Confidence 467899999999 99999999983 2221111 0 12222 11 3799999 99999999999
Q ss_pred cCceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 339 CNKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 339 ~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..++|||++|||+|+|+++||+|+++ +++ |+++||+||++|+++...+ ....+++||.++|++|
T Consensus 58 ~~~~vv~i~GDG~f~m~~~el~ta~~--~~~~~l~vvV~NN~~~~~~~~~~-------------~~~~~~~d~~~lA~a~ 122 (179)
T cd03372 58 QPRKVIVIDGDGSLLMNLGALATIAA--EKPKNLIIVVLDNGAYGSTGNQP-------------THAGKKTDLEAVAKAC 122 (179)
T ss_pred CCCcEEEEECCcHHHhCHHHHHHHHH--cCCCCEEEEEEcCccccccCCCC-------------CCCCCCCCHHHHHHHc
Confidence 76899999999999999999999998 885 7999999999999984310 0122479999999999
Q ss_pred CCceeeeC-CHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 418 GLNHVQVK-TKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 418 G~~~~~v~-~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
|+++.+|+ +.+||+++|++++ ++|+||||.+++++.
T Consensus 123 G~~~~~v~~~~~el~~al~~a~--~gp~lIev~~~~~~~ 159 (179)
T cd03372 123 GLDNVATVASEEAFEKAVEQAL--DGPSFIHVKIKPGNT 159 (179)
T ss_pred CCCeEEecCCHHHHHHHHHHhc--CCCEEEEEEEcCCCC
Confidence 99999999 9999999999998 899999999988664
No 115
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.92 E-value=1.4e-24 Score=228.32 Aligned_cols=181 Identities=11% Similarity=0.026 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHhhcC--CCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeE-eecCCCCCccchHHH
Q 041113 255 SLTEPHVAHELSRALT--SNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRV-AGNRGASGIDGLLST 331 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~--~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~G~mG~~g~lpa 331 (983)
.+...-++++|.+.++ ++.+++.|.|. +.+|..++... ..|+ .++.. ..+.|+||+ |+|+
T Consensus 10 gc~~~~~~~~l~~~l~~p~d~ivv~d~G~----~~~~~~~~~~~-~~~~----------~~~~~~~~~~g~mG~--Glpa 72 (237)
T cd02018 10 GCGEVTAVRVVLAALPAPEDTVIANSTGC----SSVYASTAPFN-SWAV----------PWVNSLFEDANAVAS--GLKR 72 (237)
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEEeCCCc----cceecccCcCc-ccCC----------CeeeccccCHHHHHH--HHHH
Confidence 3566778999999999 99999999999 77777665221 1222 22221 124599999 9999
Q ss_pred HHhhhhc-----c-CceEEEEEccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcc-cccccc
Q 041113 332 AIGFAVG-----C-NKHVLCVVGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPR-ILDQYF 402 (983)
Q Consensus 332 aiGaalA-----~-~~~vv~i~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~-~~~~~~ 402 (983)
||||++| . +++||+|+|||+|+ |++|+|+|+++ +++|+++||+||++|++.+..+... ..... ......
T Consensus 73 AiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~ta~~--~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~ 150 (237)
T cd02018 73 GLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSHSLF--RGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAG 150 (237)
T ss_pred HHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHHHHH--cCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCC
Confidence 9999999 7 89999999999997 89999999998 9999999999999999875321110 00000 000111
Q ss_pred ccCCCCCHHHHHHHcCCceee---eCCHHHHHHHHHhhhc-cCCCEEEEEEcCccc
Q 041113 403 YTTHNISIQNLCLAHGLNHVQ---VKTKVELEEALSMSQH-LGTDRVIEVESCIDA 454 (983)
Q Consensus 403 ~~~~~~df~~la~a~G~~~~~---v~~~~eL~~aL~~a~~-~~~p~lIeV~~~~~~ 454 (983)
....++||+++|++||+.+++ |+++++|+++|+++++ .++|+||||.++...
T Consensus 151 ~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 151 KKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHAYTPCIT 206 (237)
T ss_pred CcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 123569999999999999986 9999999999999997 999999999988654
No 116
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.92 E-value=2.4e-24 Score=225.92 Aligned_cols=178 Identities=11% Similarity=0.018 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcC----CCcccccccccccccCCCCCcceeEeecCCCCCccchHH
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGR----NWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLS 330 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lp 330 (983)
......+++.|++.+|++.+++.|+|. +..|.. .+++. ..+.++ .++.|+||+ |+|
T Consensus 10 gC~~~~~~~~l~~~lp~d~iiv~D~G~----~~~~~~~~~~~~~~~-~~~~~~-------------~~~~gsmG~--Glp 69 (235)
T cd03376 10 GCGAALALRHVLKALGPDTVVVNPTGC----LEVITTPYPYTAWRV-PWIHVA-------------FENAAAVAS--GIE 69 (235)
T ss_pred CCccHHHHHHHHHHhhcCeEEEeCCCc----ccccCCcCCCccccc-cceehh-------------hcCHHHHHH--HHH
Confidence 366788999999999999999999998 444332 22221 111111 234479999 999
Q ss_pred HHHhhhhcc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC-CCccccccccc----
Q 041113 331 TAIGFAVGC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADR-TEPRILDQYFY---- 403 (983)
Q Consensus 331 aaiGaalA~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~-~~~~~~~~~~~---- 403 (983)
+|||++++. +++||+++|||+ |+|++|||+|+++ +++|+++||+||++|++......... .........++
T Consensus 70 aAiGa~~a~p~r~VV~i~GDG~~~~m~~~eL~ta~~--~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~ 147 (235)
T cd03376 70 AALKALGRGKDITVVAFAGDGGTADIGFQALSGAAE--RGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSF 147 (235)
T ss_pred HHHHHhccCCCCeEEEEEcCchHHhhHHHHHHHHHH--cCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCcccc
Confidence 999999998 999999999999 5899999999999 99999999999999997543211100 00000000111
Q ss_pred --cCCCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 404 --TTHNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 404 --~~~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
....+||.++|++||++++ +|++++||+++|+++++.++|+||||.++.-.
T Consensus 148 ~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIev~~~C~~ 203 (235)
T cd03376 148 GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIHILSPCPT 203 (235)
T ss_pred ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 2245899999999999986 59999999999999999999999999998753
No 117
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.91 E-value=2.9e-24 Score=216.56 Aligned_cols=166 Identities=23% Similarity=0.254 Sum_probs=133.1
Q ss_pred HHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-
Q 041113 261 VAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC- 339 (983)
Q Consensus 261 ~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~- 339 (983)
+++.|.+.++++++++.|+|. ...|...++.. .+|.++ ....++|+||+ ++|+|+|++++.
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~----~~~~~~~~~~~-~~~~~~-----------~~~~~~g~~G~--~~~~a~Gaa~a~~ 63 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGN----SAYWAYRYLPL-RRGRRF-----------LTSTGFGAMGY--GLPAAIGAALAAP 63 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcH----HHHHHHHheee-CCCCcE-----------EeCCCchhhhh--hHHHHHHHHHhCC
Confidence 577899999999999999998 33333332221 222222 23577899999 999999999999
Q ss_pred CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCC
Q 041113 340 NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419 (983)
Q Consensus 340 ~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~ 419 (983)
+++|++++|||+|+|+++||+|+++ +++|+++||+||++|++++..+.... .........+.+||.+++++||+
T Consensus 64 ~~~vv~~~GDG~~~~~~~~l~ta~~--~~~~~~~iv~nN~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~a~~~G~ 137 (168)
T cd00568 64 DRPVVCIAGDGGFMMTGQELATAVR--YGLPVIVVVFNNGGYGTIRMHQEAFY----GGRVSGTDLSNPDFAALAEAYGA 137 (168)
T ss_pred CCcEEEEEcCcHHhccHHHHHHHHH--cCCCcEEEEEECCccHHHHHHHHHHc----CCCcccccCCCCCHHHHHHHCCC
Confidence 8999999999999999999999998 99999999999999999865321100 01111223357899999999999
Q ss_pred ceeeeCCHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 420 ~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
++.+|++++||+++++++++.++|+||||.+
T Consensus 138 ~~~~v~~~~~l~~a~~~a~~~~~p~~i~v~~ 168 (168)
T cd00568 138 KGVRVEDPEDLEAALAEALAAGGPALIEVKT 168 (168)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9999999999999999999889999999975
No 118
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.90 E-value=3e-23 Score=220.66 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=133.5
Q ss_pred CCCCHHHHHHHHHhh--cCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHH
Q 041113 254 YSLTEPHVAHELSRA--LTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLST 331 (983)
Q Consensus 254 ~~~~~~~~~~~l~~~--l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpa 331 (983)
..+.+..++++|.+. ++++.+++.|.|. +..+.. ++. + ....++||+ |+|+
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc----~~~~~~-~~~--------------~------~~~~~~~G~--alPa 76 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGC----SGRFSS-YVN--------------C------NTVHTTHGR--AVAY 76 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCH----HHHhhc-cCC--------------C------Cceeecccc--HHHH
Confidence 457789999999998 5888999999998 332221 211 1 122258999 9999
Q ss_pred HHhhhhcc-CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc-CCC
Q 041113 332 AIGFAVGC-NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT-THN 407 (983)
Q Consensus 332 aiGaalA~-~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~-~~~ 407 (983)
|+|+++|+ +++||+++|||+|+| +.+|+.|++| +++|+++||+||+.||+++..+... ..........++. .++
T Consensus 77 AiGaklA~Pdr~VV~i~GDG~f~~~g~~el~ta~r--~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~ 154 (277)
T PRK09628 77 ATGIKLANPDKHVIVVSGDGDGLAIGGNHTIHGCR--RNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPT 154 (277)
T ss_pred HHHHHHHCCCCeEEEEECchHHHHhhHHHHHHHHH--hCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCC
Confidence 99999999 999999999999974 8899999999 9999999999999999987422110 0000001011111 356
Q ss_pred CCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 408 ISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 408 ~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+||.++|++||+.++ +|++++||+++|+++++.+||+||||.++...
T Consensus 155 ~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 155 FDACKLATAAGASFVARESVIDPQKLEKLLVKGFSHKGFSFFDVFSNCHI 204 (277)
T ss_pred CCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 799999999999984 89999999999999999999999999999874
No 119
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.88 E-value=3.2e-22 Score=215.04 Aligned_cols=168 Identities=15% Similarity=0.057 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHhh-c-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHH
Q 041113 256 LTEPHVAHELSRA-L-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAI 333 (983)
Q Consensus 256 ~~~~~~~~~l~~~-l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaai 333 (983)
+-...++++|.+. + |++.+++.|.|. +. +...++. +.+..|+||+ ++|+|+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~----s~-~~~~yl~--------------------~~~~~g~mG~--alpaAi 80 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGC----SS-KIPGYFL--------------------SHGLHTLHGR--AIAFAT 80 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcH----hh-hhhhhcc--------------------cCccchhhcc--HHHHHH
Confidence 4456777888876 4 778888999998 32 2222211 2233489999 999999
Q ss_pred hhhhcc-CceEEEEEccchh-hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-Ccccccccccc-CCCCC
Q 041113 334 GFAVGC-NKHVLCVVGDISF-LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYT-THNIS 409 (983)
Q Consensus 334 GaalA~-~~~vv~i~GDGsf-~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~d 409 (983)
|+++|+ +++||+++|||+| +|++|||+|++| +|+|+++||+||++||+++........ ........++. ..++|
T Consensus 81 GaklA~pd~~VV~i~GDG~~~~mg~~eL~tA~r--~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d 158 (301)
T PRK05778 81 GAKLANPDLEVIVVGGDGDLASIGGGHFIHAGR--RNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPID 158 (301)
T ss_pred HHHHHCCCCcEEEEeCccHHHhccHHHHHHHHH--HCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCC
Confidence 999999 9999999999997 599999999999 999999999999999999753111000 00000001111 24689
Q ss_pred HHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCc
Q 041113 410 IQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCI 452 (983)
Q Consensus 410 f~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~ 452 (983)
|.++|+++|+.++ ++.++++|+++|+++++.+||+||||.++.
T Consensus 159 ~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIeV~~~C 204 (301)
T PRK05778 159 PCALALAAGATFVARSFAGDVKQLVELIKKAISHKGFAFIDVLSPC 204 (301)
T ss_pred HHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 9999999999987 799999999999999999999999999885
No 120
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.88 E-value=3.9e-22 Score=220.92 Aligned_cols=167 Identities=20% Similarity=0.288 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
+++..+++.|.+.++++++|+.+.|...+. +|.......-..|+ .++ ..|+||+ ++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~e--l~~~~~~~~~~~~~----------~f~----~~GsMG~--a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRE--LYELRDRIGQGHAR----------DFL----TVGSMGH--ASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHH--HHHhhcccccCCCC----------ceE----eechhhh--HHHHHHHH
Confidence 899999999999999999999999985443 23221100000022 222 2499999 99999999
Q ss_pred hhcc-CceEEEEEccchhhhccchHHHHHhhccCC-CEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHH
Q 041113 336 AVGC-NKHVLCVVGDISFLHDTNGLAILKQRMKRK-PILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNL 413 (983)
Q Consensus 336 alA~-~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~l-pv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 413 (983)
++|. +++||||+|||+|+|+++||.|+++ +++ |+++||+||++|+++... . ....++||.++
T Consensus 234 ala~p~r~Vv~i~GDGsflm~~~eL~t~~~--~~~~nli~VVlNNg~~~~~g~q----------~----~~~~~~d~~~i 297 (361)
T TIGR03297 234 ALARPDQRVVCLDGDGAALMHMGGLATIGT--QGPANLIHVLFNNGAHDSVGGQ----------P----TVSQHLDFAQI 297 (361)
T ss_pred HHHCCCCCEEEEEChHHHHHHHHHHHHHHH--hCCCCeEEEEEcCccccccCCc----------C----CCCCCCCHHHH
Confidence 9998 9999999999999999999999998 886 899999999999876321 0 11246999999
Q ss_pred HHHcCC-ceeeeCCHHHHHHHHHhhhccCCCEEEEEEcCcccch
Q 041113 414 CLAHGL-NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANA 456 (983)
Q Consensus 414 a~a~G~-~~~~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~ 456 (983)
|++||+ .+.+|++.+||+++|+++.+.++|+||||.+++...+
T Consensus 298 A~a~G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV~v~~g~~~ 341 (361)
T TIGR03297 298 AKACGYAKVYEVSTLEELETALTAASSANGPRLIEVKVRPGSRA 341 (361)
T ss_pred HHHCCCceEEEeCCHHHHHHHHHHHHhCCCcEEEEEEecCCCcc
Confidence 999996 6899999999999999999889999999999986543
No 121
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.87 E-value=9.4e-22 Score=210.85 Aligned_cols=170 Identities=16% Similarity=0.098 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHhhc------CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecC-CCCCccc
Q 041113 255 SLTEPHVAHELSRAL------TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNR-GASGIDG 327 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l------~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-G~mG~~g 327 (983)
.+....+++.|.+.+ |++.+++.|.|. +..+.. + + .+.++ |+||+
T Consensus 22 GCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc----~~~~~~-~--------------------~-~~~~~~g~mG~-- 73 (286)
T PRK11867 22 GCGDGSILAALQRALAELGLDPENVAVVSGIGC----SGRLPG-Y--------------------I-NTYGFHTIHGR-- 73 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCcc----ccccCc-c--------------------c-cccchhhhhhc--
Confidence 355567888888888 788999999998 333221 1 1 12344 89999
Q ss_pred hHHHHHhhhhcc-CceEEEEEccch-hhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCcccccccccc
Q 041113 328 LLSTAIGFAVGC-NKHVLCVVGDIS-FLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEPRILDQYFYT 404 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~GDGs-f~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~~~~~~~~~~ 404 (983)
|+|+|+|+++|+ +++||+++|||+ |+|+++||+|++| +|+|+++||+||++||+++...... ..........++.
T Consensus 74 alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~tA~r--~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~ 151 (286)
T PRK11867 74 ALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALR--RNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGS 151 (286)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHHHHHH--hCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCC
Confidence 999999999999 999999999995 9999999999999 9999999999999999997531110 0000000011121
Q ss_pred -CCCCCHHHHHHHcCCceee---eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 405 -THNISIQNLCLAHGLNHVQ---VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 405 -~~~~df~~la~a~G~~~~~---v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.+++||.++|+++|+.++. +.+++||+++|+++++.++|+||||.++.-.
T Consensus 152 ~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIev~~~C~~ 205 (286)
T PRK11867 152 IEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVEILQPCPT 205 (286)
T ss_pred CCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 2358999999999998873 7799999999999999999999999998754
No 122
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.86 E-value=2.4e-21 Score=205.51 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=121.7
Q ss_pred hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEE
Q 041113 268 ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCV 346 (983)
Q Consensus 268 ~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i 346 (983)
.+|++.+++.|.|. +..+. .++. ..+..+.||+ ++|+|+|+++|+ +++||++
T Consensus 32 ~~p~d~ivvsdiG~----~~~~~-~~~~--------------------~~~~~~~mG~--alp~AiGaklA~pd~~VVai 84 (280)
T PRK11869 32 LKPRQVVIVSGIGQ----AAKMP-HYIN--------------------VNGFHTLHGR--AIPAATAVKATNPELTVIAE 84 (280)
T ss_pred CCCCCEEEEeCchH----hhhHH-HHcc--------------------CCCCCccccc--HHHHHHHHHHHCCCCcEEEE
Confidence 45778899999888 33331 1211 1244477999 999999999999 9999999
Q ss_pred Eccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-Ccccccccccc-CCCCCHHHHHHHcCCceee
Q 041113 347 VGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYT-THNISIQNLCLAHGLNHVQ 423 (983)
Q Consensus 347 ~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~-~~~~df~~la~a~G~~~~~ 423 (983)
+|||+|+|. +|||+|++| +|+|+++||+||++|++++........ .........+. ...+||.++|+++|+.++.
T Consensus 85 ~GDG~~~~iG~~eL~tA~r--~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va 162 (280)
T PRK11869 85 GGDGDMYAEGGNHLIHAIR--RNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVA 162 (280)
T ss_pred ECchHHhhCcHHHHHHHHH--hCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEE
Confidence 999999976 999999999 999999999999999998642211000 00000001122 2358999999999999988
Q ss_pred ---eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 424 ---VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 424 ---v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+.++++|+++|++|++.+||+||||.+..-.
T Consensus 163 ~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 163 RTFSGDIEETKEILKEAIKHKGLAIVDIFQPCVS 196 (280)
T ss_pred EeCCCCHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence 8899999999999999999999999988643
No 123
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.85 E-value=9.3e-21 Score=201.19 Aligned_cols=170 Identities=17% Similarity=0.081 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHhhc------CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchH
Q 041113 256 LTEPHVAHELSRAL------TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLL 329 (983)
Q Consensus 256 ~~~~~~~~~l~~~l------~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~l 329 (983)
+....++..|++.+ |++.+++.|.|. +. |...++. ++...|+||+ ++
T Consensus 13 Cg~~~il~al~~al~~l~~~~~~~ivvsdiGc----~~-~~~~~~~--------------------~~~~~~~~G~--al 65 (279)
T PRK11866 13 CGNYGILEALRKALAELGIPPENVVVVSGIGC----SS-NLPEFLN--------------------TYGIHGIHGR--VL 65 (279)
T ss_pred CCChHHHHHHHHHHHHhcCCCCCEEEEECCch----hh-hhhhhcc--------------------CCCccccccc--HH
Confidence 45566667777666 778888999998 33 3332222 1234589999 99
Q ss_pred HHHHhhhhcc-CceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCC-CccccccccccC-
Q 041113 330 STAIGFAVGC-NKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRT-EPRILDQYFYTT- 405 (983)
Q Consensus 330 paaiGaalA~-~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~-~~~~~~~~~~~~- 405 (983)
|+|+|+++|+ +++||+++||| +|+|++|||.|++| +|+|+++||+||+.||+.+........ ........++..
T Consensus 66 p~A~GaklA~Pd~~VV~i~GDG~~f~ig~~eL~tA~r--rn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~ 143 (279)
T PRK11866 66 PIATGVKWANPKLTVIGYGGDGDGYGIGLGHLPHAAR--RNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIE 143 (279)
T ss_pred HHHHHHHHHCCCCcEEEEECChHHHHccHHHHHHHHH--HCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCC
Confidence 9999999999 99999999999 79999999999999 899999999999999999743211100 000000111111
Q ss_pred CCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 406 HNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
..+||.++|+++|+.++.. .++++|.++|++|++.+||++|||....-.
T Consensus 144 ~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC~~ 195 (279)
T PRK11866 144 EPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPCVT 195 (279)
T ss_pred CCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 2359999999999987655 789999999999999999999999987643
No 124
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.84 E-value=1.3e-20 Score=200.50 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=118.5
Q ss_pred hcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhhhhcc-CceEEEE
Q 041113 268 ALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCV 346 (983)
Q Consensus 268 ~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGaalA~-~~~vv~i 346 (983)
..|++.+++.|.|.. .. . | +++...+..++||+ ++|+|+|+++|+ +++||++
T Consensus 25 ~~p~d~iivsdiGc~----~~-~---------~-----------~~l~~~~~~t~mG~--alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 25 LDPEQVVVVSGIGCS----AK-T---------P-----------HYVNVNGFHGLHGR--ALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred CCCCCEEEEECCCcc----cc-c---------C-----------CeEecCCccccccc--HHHHHHHHHHHCCCCcEEEE
Confidence 346788899999982 11 1 1 12222233356899 999999999999 9999999
Q ss_pred Eccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC-cccccccccc---CCCCCHHHHHHHcCCce
Q 041113 347 VGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE-PRILDQYFYT---THNISIQNLCLAHGLNH 421 (983)
Q Consensus 347 ~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~-~~~~~~~~~~---~~~~df~~la~a~G~~~ 421 (983)
+|||+|+ |+++||.|++| +|+|+++||+||+.||+++......... .......++. +.+++|..+|+++|+.+
T Consensus 78 ~GDG~f~~mg~~eL~tA~r--~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va 155 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVAAGR--RNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVA 155 (287)
T ss_pred eCchHHHhccHHHHHHHHH--hCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEE
Confidence 9999986 99999999999 8999999999999999997532111000 0000000111 23677888999998877
Q ss_pred ee-eCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 422 VQ-VKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 422 ~~-v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
.. +.++++|+++|++|++.+||+||||.+..-.
T Consensus 156 ~~~~~~~~eL~~ai~~Al~~~GpslIeV~~pC~t 189 (287)
T TIGR02177 156 RGFSGDVAHLKEIIKEAINHKGYALVDILQPCVT 189 (287)
T ss_pred EEecCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 76 6999999999999999999999999988543
No 125
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.84 E-value=7.3e-22 Score=191.29 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 76 MAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 76 i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
|++++++|.+||||+|++|.+++ .++.+++++|+|++|+||++|++ + ||+||++||+| +|..|..+++..
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~-~------kg~i~~~hp~~--~G~~g~~~~~~~ 71 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPM-G------KGVIPEDHPLF--LGYLGLFGSPAA 71 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG-G------TTSSTTTSTTE--EEESCGGSCHHH
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc-c------ccccCCCCchh--cccCCccCCHHH
Confidence 57899999999999999999876 45678999999999999999998 5 89999999996 788887777777
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
...+++||+||++|+++++..+.++...+.+ .++||||.|+.++++++.+++.+++|++.+|++|
T Consensus 72 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 72 NEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 7888999999999999987676654344444 3799999999999999999999999999999986
No 126
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.83 E-value=2.5e-20 Score=223.08 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=134.7
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
......++++|++.+|++.+++.|.|. +.+|.. .|.+ .+ ..+|+||+ ++|+|+|
T Consensus 361 GCp~~~~~~~l~~~l~~d~ivv~D~G~----~~~~~~-------~p~~----------~~---~~~~~mG~--~~~~AiG 414 (595)
T TIGR03336 361 GCPHRATFYAMKKVADREAIFPSDIGC----YTLGIQ-------PPLG----------TV---DTTLCMGA--SIGVASG 414 (595)
T ss_pred CCCChHHHHHHHHhccCCcEEecCcch----hhcccc-------CCcc----------cc---ceeeccCc--hHHHHhh
Confidence 366778999999999999999999998 444431 1211 22 22489999 9999999
Q ss_pred hhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHH
Q 041113 335 FAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQN 412 (983)
Q Consensus 335 aalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~ 412 (983)
+++|. +++||+++|||+|+|+ ++||+|+++ +++|+++||+||++|++++..+... ..+.......+++||++
T Consensus 415 a~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~--~~~~i~~vVlnN~~~g~~~~q~~~~----~~~~~~~~~~~~~d~~~ 488 (595)
T TIGR03336 415 LSKAGEKQRIVAFIGDSTFFHTGIPGLINAVY--NKANITVVILDNRITAMTGHQPNPG----TGVTGMGEATKEISIEE 488 (595)
T ss_pred hhhcCCCCCEEEEeccchhhhcCHHHHHHHHH--cCCCeEEEEEcCcceeccCCCCCCC----CCCCCCCCcCCCcCHHH
Confidence 99999 9999999999999997 999999999 9999999999999999987532111 01111111235799999
Q ss_pred HHHHcCCceeeeCCH---HHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 413 LCLAHGLNHVQVKTK---VELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 413 la~a~G~~~~~v~~~---~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+|++||+++.+|.++ +|+.++|+++++.++|+||++..+...
T Consensus 489 ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v~~~C~l 533 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIAKQPCVL 533 (595)
T ss_pred HHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEEcccCcc
Confidence 999999999999988 456899999998899999999887653
No 127
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.75 E-value=4.6e-18 Score=159.53 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=90.1
Q ss_pred eEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCcccHHHHHHHHH-HHHhHhccCccc
Q 041113 496 CRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR-FLLHFMTGAKIS 574 (983)
Q Consensus 496 ~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~l~-~~~~~l~g~~~~ 574 (983)
++|+++.+++||+ ||.++.++. ..++.++|||+|++|++||||+.+.+...+ .+...+. .+.|.++|+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~----~~~~~v~V~l~t~~G~~G~Ge~~~~~~~~~---~~~~~~~~~l~~~l~g~~~~ 73 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTV----SEREFVLVRLETDDGVVGWGEAFPSPGTAE---TVASALEDYLAPLLIGQDPD 73 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEE----EEEEEEEEEEEETTSEEEEEEEESSSSSHH---HHHHHHHHTHHHHHTTSBTT
T ss_pred EEEEEEEeccCcC-CEEeeCEEE----EEeEEEEEEEEECCCCEEEEEeeCCcchhH---HHHHHHHHHHHHHHhcCCHH
Confidence 5788889999999 999999865 458999999999999999999988754222 2333333 488999999988
Q ss_pred ccccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 041113 575 YFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILY 628 (983)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLG 628 (983)
.+..++.. +.... ...++|++|||+||||++||.+|+|||+|||
T Consensus 74 ~~~~~~~~-----~~~~~-----~~~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 74 DIEDIWQE-----LYRLI-----KGNPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp GHHHHHHH-----HHHHT-----SSHHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHH-----HHHhc-----cchHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 76554431 11111 1278999999999999999999999999998
No 128
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.68 E-value=2.1e-16 Score=175.41 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=121.4
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.+..+++|+ ++|.|+|+++|. +++|||++|||+|+|+ .++|.|+++ +++|+++||+||+ |++....
T Consensus 118 ~g~~~~vG~--~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~--~~LPvi~Vv~NN~-~~~~~~~-- 190 (341)
T TIGR03181 118 LPPNIPIGT--QYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV--FKAPVVFFVQNNQ-WAISVPR-- 190 (341)
T ss_pred cCCCchHhc--chhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhc--cCCCEEEEEECCC-Cccccch--
Confidence 455578888 999999999985 6899999999999998 588999998 9999999999996 6654210
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCccc---------
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCIDA--------- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~~--------- 454 (983)
.. ....+||.++|++||+++.+|+..+++ +++++++++.++|+||||.+.+..
T Consensus 191 --------~~----~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~ 258 (341)
T TIGR03181 191 --------SK----QTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPT 258 (341)
T ss_pred --------hh----hhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCc
Confidence 00 113579999999999999999998886 888888888899999999987610
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
....+.++.+++.+.+..++..+..++.|+.
T Consensus 259 ~YR~~~e~~~~~~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~ 319 (341)
T TIGR03181 259 RYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPV 319 (341)
T ss_pred cCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1334445667788889999999998888875
No 129
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.65 E-value=7.2e-16 Score=169.48 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=117.9
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhcc--chHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHDT--NGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~~--~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
+.++.|+||+ ++|.|+|+++|. ++.||+++|||+|++.. .+|.++.. +++|+++||+||+ |++....
T Consensus 105 ~~~~~g~~G~--~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~--~~lPvi~vv~NN~-yg~s~~~- 178 (315)
T TIGR03182 105 FYGGHGIVGA--QVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAAL--WKLPVIFVIENNL-YAMGTSV- 178 (315)
T ss_pred cccCcCcccc--cccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhc--cCcCEEEEEEcCC-ccccCCH-
Confidence 4577899999 999999999996 67999999999998653 66999988 9999999999995 9987432
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHH--H----HHHHHHhhhccCCCEEEEEEcCcc---------
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKV--E----LEEALSMSQHLGTDRVIEVESCID--------- 453 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~--e----L~~aL~~a~~~~~p~lIeV~~~~~--------- 453 (983)
.. ....+||.++|++||+++++|+..+ + +++|++++.+.++|+||||.+.+-
T Consensus 179 ----------~~---~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~ 245 (315)
T TIGR03182 179 ----------ER---SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPA 245 (315)
T ss_pred ----------HH---HhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCcc
Confidence 00 1135799999999999999999744 4 455555555678999999998761
Q ss_pred -----------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -----------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+.++.+++.+.+.+++..+.+.+.|+.
T Consensus 246 ~Yr~~~e~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~ 306 (315)
T TIGR03182 246 KYRSKEEVEEWRKRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPV 306 (315)
T ss_pred ccCCHHHHHHHHhcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 01333445667777888888888888887764
No 130
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.2e-14 Score=154.47 Aligned_cols=297 Identities=20% Similarity=0.198 Sum_probs=192.9
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc-----------------ccHH-
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK-----------------ENLL- 555 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~-----------------~~~~- 555 (983)
+|++|..+.+- .+.+ .+++-|+|+|++|..|++ +.|.+++. ..+.
T Consensus 3 ~I~~i~aReIl--------DSRG--------npTVEveV~~~~g~~g~a-~vPSGAStG~~EavElrdgd~ry~gkGV~~ 65 (423)
T COG0148 3 AIEDVIAREIL--------DSRG--------NPTVEVEVTLEDGFGGRA-AVPSGASTGEHEAVELRDGDSRYLGKGVLK 65 (423)
T ss_pred ccceeEEEEEE--------cCCC--------CceEEEEEEEcCCCccee-ecCCCCCCCCceeEEecCCccccccccHHH
Confidence 78888887762 2222 688999999999999988 34443221 1111
Q ss_pred HHHHHHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCc
Q 041113 556 DAEEQLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE 632 (983)
Q Consensus 556 ~~~~~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~ 632 (983)
.+...-..++|.|+|.+..+ +..++...+.+..++ .+...++-||.+|+--+.|..+|+|||++|||...
T Consensus 66 AV~nVn~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks-------~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a 138 (423)
T COG0148 66 AVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKS-------KLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNA 138 (423)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCCCccc-------ccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccc
Confidence 23333356889999988765 333333332222222 23467889999999999999999999999999641
Q ss_pred cccccccccceeEEEEeecCCC----------------CHH----------HHHHHHHHhh-hcCCCEEEEeccCC----
Q 041113 633 IDEEISKRSTSIKICALIDSNK----------------SPV----------EVASIATTLV-EEGFTAIKLKVARR---- 681 (983)
Q Consensus 633 ~~~~~~~~~~~i~~~~~~~~~~----------------~~~----------~~~~~~~~~~-~~G~~~~KiKig~~---- 681 (983)
...++|+...++++. ..+ ++-..+.+++ +.|..+- +|..
T Consensus 139 -------~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfA 208 (423)
T COG0148 139 -------LVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFA 208 (423)
T ss_pred -------cccccceeeeecccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccC
Confidence 134567666553211 111 1222222222 2344333 2321
Q ss_pred CCh---HHHHHHH-HHHHHH---cCCCcEEEEEcCC--------------CCCHHHHHHHHhhc-ccCCCceeecCCC--
Q 041113 682 ADP---IKDAEVI-QEVRKK---VGHRIELRVDANR--------------NWTYQEALEFGFLI-KDCDLQYIEEPVQ-- 737 (983)
Q Consensus 682 ~~~---~~d~~~v-~~vr~~---~g~~~~l~vDaN~--------------~~~~~~a~~~~~~l-~~~~i~~iEeP~~-- 737 (983)
++. ++-++.+ +++.++ .|.++.|.+|+-. .+|.++-+++...| ++|+|..||+|+.
T Consensus 209 P~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~YpivsiEDpl~E~ 288 (423)
T COG0148 209 PNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPIVSIEDPLSED 288 (423)
T ss_pred CCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCEEEEcCCCCch
Confidence 122 2333433 333332 2456888999732 34555666666555 8899999999999
Q ss_pred ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 738 NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 738 ~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
||+++++|.+..+ +.|++|.-..+-. ..++.-++.+ ++.+-+|+..+|.+|++++.+.+|+++|+..+++|..
T Consensus 289 Dweg~~~lt~~~g~kvqivGDDLfvTN~----~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRS 364 (423)
T COG0148 289 DWEGFAELTKRLGDKVQIVGDDLFVTNP----KRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRS 364 (423)
T ss_pred hHHHHHHHHHhhCCeEEEECCcceecCH----HHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 8999999999887 6888888766632 3566667666 5889999999999999999999999999999999965
Q ss_pred -chHHHHHHHHHHHhhc
Q 041113 815 -ESGLGLSAYIIFSSYL 830 (983)
Q Consensus 815 -es~ig~~a~~~laa~~ 830 (983)
||-=.+-| |||-++
T Consensus 365 GETeD~tIA--dLAVa~ 379 (423)
T COG0148 365 GETEDTTIA--DLAVAT 379 (423)
T ss_pred CCcccchHH--HHHHHh
Confidence 44333333 444443
No 131
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.63 E-value=2e-15 Score=167.02 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=119.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhhccc---hHHHHHhhccCCCEEEEEEeCC-CC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLHDTN---GLAILKQRMKRKPILMLVINNH-GG 381 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~~~~---eL~Ta~~~~~~lpv~iiV~NN~-g~ 381 (983)
+++|+||+ ++|.|+|+++|. ++.|||++|||+|+ ..+ +|.|+++ +++|+++||.||+ ++
T Consensus 125 ~~~g~lG~--~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~--~~LPvifvv~NN~~~i 199 (341)
T CHL00149 125 GGFAFIGE--GIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVL--WKLPIIFVVENNQWAI 199 (341)
T ss_pred CCChhhhc--cHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhh--cCCCEEEEEEeCCeee
Confidence 67799999 999999999993 67899999999997 444 6899998 9999999999999 56
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCcc--
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCID-- 453 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~-- 453 (983)
++.... . ...+||.++|++||+.+.+|+..+.+ ++|++++.+.++|+||||.|.+-
T Consensus 200 ~~~~~~---------~-------~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~g 263 (341)
T CHL00149 200 GMAHHR---------S-------TSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRG 263 (341)
T ss_pred ecchhh---------e-------eCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCC
Confidence 554210 0 12579999999999999999988764 77888888889999999999540
Q ss_pred ------------------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 ------------------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-+...+.++.+++.+.+..++.++.+++.|+.
T Consensus 264 Hs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 331 (341)
T CHL00149 264 HSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNI 331 (341)
T ss_pred cCCCCCccCCCHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 12344556778888889999999999988875
No 132
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.60 E-value=3.5e-15 Score=160.03 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=103.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
...|+||+ |+|+|+|+++|. +++|+|++|||+|++ +.++|.|+.+ +++|.+++|+||++|++....
T Consensus 102 ~~~GslG~--gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~--~~l~~li~vvdnN~~~~~~~~--- 174 (255)
T cd02012 102 VTTGSLGQ--GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGH--YKLDNLIAIVDSNRIQIDGPT--- 174 (255)
T ss_pred eCCcchhh--HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHH--cCCCcEEEEEECCCccccCcH---
Confidence 45599999 999999999984 689999999999998 6899999999 999999999999999875321
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhcc-CCCEEEEEEcCccc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHL-GTDRVIEVESCIDA 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~-~~p~lIeV~~~~~~ 454 (983)
. ......||.+++++||+++.+|+ +.++|.++|+++.+. ++|++|+|.|.+..
T Consensus 175 -------~----~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 175 -------D----DILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAKTIKGK 230 (255)
T ss_pred -------h----hccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEEeeccc
Confidence 0 11245799999999999999999 999999999999876 89999999998754
No 133
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.60 E-value=7.5e-15 Score=160.60 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred EeecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
+.++.|+||+ ++|+|+|+++|. +++||+++|||+|+|+ .++|.|+++ +++|+++||.||+ |++....
T Consensus 99 ~~~~~g~lG~--~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~--~~lPvi~vv~NN~-~~i~~~~- 172 (293)
T cd02000 99 FFGGNGIVGG--QVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAAL--WKLPVIFVCENNG-YAISTPT- 172 (293)
T ss_pred cccccccccc--chhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHh--hCCCEEEEEeeCC-eeccCCH-
Confidence 3577799999 999999999985 6899999999999987 367999998 9999999999985 9886431
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+. ....+||.+++++||+++.+|+. ++++.+++++++ +.++|+||||.+.+
T Consensus 173 ----------~~---~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 173 ----------SR---QTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred ----------HH---HhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 00 01458999999999999999984 567777777665 55899999999876
No 134
>PRK08350 hypothetical protein; Provisional
Probab=99.60 E-value=3.2e-13 Score=142.96 Aligned_cols=285 Identities=14% Similarity=0.089 Sum_probs=186.9
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC----cCcccHH-HHHHHHHHHHhH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE----IHKENLL-DAEEQLRFLLHF 567 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~----~~~~~~~-~~~~~l~~~~~~ 567 (983)
++|++|..+.+- .+.| .++|-|+|+|++| .|.+-+.... |. ..+. .+...-..+.|.
T Consensus 2 ~~I~~i~aReIl--------DSRG--------nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~ 63 (341)
T PRK08350 2 TVIENIIGRVAV--------LRGG--------KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPE 63 (341)
T ss_pred ceeEEEEEEEEE--------cCCC--------CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHH
Confidence 479999988762 2332 6889999999999 7877443211 22 2222 233333458999
Q ss_pred hccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCcccccccccccee
Q 041113 568 MTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSI 644 (983)
Q Consensus 568 l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i 644 (983)
|+|.++.+ +..++...+.+..++. +...|+-|+.+|+.-+.|...|+|||++|||... ..-++
T Consensus 64 LiG~d~~dQ~~ID~~mielDGT~nKs~-------lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~-------~~lPv 129 (341)
T PRK08350 64 LIGFDASEQELIDSYLWEIDGTEDFSH-------IGANTALAVSVAVAKAAANSKNMPLYSYIGGTFT-------TELPV 129 (341)
T ss_pred HcCCCHHHHHHHHHHHHhccCCccccc-------cCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCC-------CccCc
Confidence 99998875 3334433333322222 2357889999999999999999999999988431 13456
Q ss_pred EEEEeecCCCC-----HHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC----CCcEEEEEcCCCCCHH
Q 041113 645 KICALIDSNKS-----PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG----HRIELRVDANRNWTYQ 715 (983)
Q Consensus 645 ~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g----~~~~l~vDaN~~~~~~ 715 (983)
|+...++++.- |.+..+-++ =|..+|--+-. +.++-++.+...-+..| .++.+.+|+...+|.+
T Consensus 130 P~~NiiNGG~~EFmI~p~ea~~~~e-----v~~~lk~il~~--~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~ 202 (341)
T PRK08350 130 PILEFAEDENFEYYVLVRDLMEITD-----VVDAVNKILEN--SKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETE 202 (341)
T ss_pred cceeeecCCceEEEECchHhhhhHH-----HHHHHHHHHhh--ChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHH
Confidence 76666543311 111111111 12222211111 34455555544444444 4688999997558888
Q ss_pred HHHHHHhhcccCCCceeecCCCChHHHHHHHhh-cCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHH
Q 041113 716 EALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENA 794 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~iEeP~~~~~~~~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~ 794 (983)
+.+ +.+++|+|.+|| |+.+.++|++|.++ ..+.|.+|.-..+-.. . ....|+.+.+|+..+|.+|++
T Consensus 203 eli---~l~~kYPIvsIE-p~~E~~gw~~lt~~g~~iqiVGDDLfvTN~~-----~---~~~~~NaiLiK~NQIGTltEt 270 (341)
T PRK08350 203 KVL---NLVEDNNIAYIK-PIGDEELFLELIAGTHGVFIDGEYLFRTRNI-----L---DRRYYNALSIKPINLGTLTDL 270 (341)
T ss_pred HHH---HHHHHCCEEEEE-cCCcchHHHHHHhcCCceEEEcccccccChh-----H---hhCccceEEEeeccceeHHHH
Confidence 877 667899999999 99933999999877 3478999988777321 1 233468899999999999999
Q ss_pred HHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhc
Q 041113 795 GLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYL 830 (983)
Q Consensus 795 ~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~ 830 (983)
++.+.+|+++|+.++++|-. ||-=.. .+|||-++
T Consensus 271 ~~ai~~A~~~g~~~vvSHRSGETeD~~--IAdLaVa~ 305 (341)
T PRK08350 271 YNLVNDVKSERITPILAEAKYESADEA--LPHLAVGL 305 (341)
T ss_pred HHHHHHHHHcCCeEEeecCCCCCcchh--HHHHHHHh
Confidence 99999999999999999976 443333 34444443
No 135
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.59 E-value=2.7e-15 Score=124.93 Aligned_cols=65 Identities=35% Similarity=0.680 Sum_probs=61.3
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeC
Q 041113 690 VIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 690 ~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~d 756 (983)
||+++|+++||++.|++|+|++||.++|+++++.|+++ .|||||++ +++++++|++++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~--~~iEeP~~~~d~~~~~~l~~~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY--EWIEEPLPPDDLDGLAELRQQTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG--SEEESSSSTTSHHHHHHHHHHCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh--heeecCCCCCCHHHHHHHHHhCCCCEEeC
Confidence 68999999999999999999999999999999999995 99999999 6899999999999999987
No 136
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.57 E-value=2.4e-15 Score=139.90 Aligned_cols=102 Identities=24% Similarity=0.354 Sum_probs=81.5
Q ss_pred CCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhchhhh
Q 041113 756 DETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQN 834 (983)
Q Consensus 756 dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~~~~~ 834 (983)
||+++++.+ ++++++.+ +|++|+|++++|||+++++++++|+++|++++++++ +++|+.++++|++++++|+.
T Consensus 1 gE~~~~~~~-----~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~ 74 (111)
T PF13378_consen 1 GESLFSLHD-----FRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCD 74 (111)
T ss_dssp STTSSSHHH-----HHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBS
T ss_pred CCCCCCHHH-----HHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCC
Confidence 799998764 66666555 699999999999999999999999999999998887 99999999999999998631
Q ss_pred hhhhhhccccCCCCCccCccchhcccccCCC---CCceee----ccCC-CCeeeEE
Q 041113 835 AYLCKVMNRELCPPVAQGLGTYQWLKEDVTT---DPISIC----HNSC-RGFVEAS 882 (983)
Q Consensus 835 ~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~---~p~~~~----~~P~-~pGlGv~ 882 (983)
+..++++.+|++. +|+. + .+|+ +||||||
T Consensus 75 ------------------~~e~~~~~~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 75 ------------------WLEYPYFEEDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp ------------------EEEEGGGTHHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred ------------------cccccchhhhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 1111444467666 3555 5 3999 9999996
No 137
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.49 E-value=1.7e-13 Score=154.85 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=117.1
Q ss_pred EeecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCC-C
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNH-G 380 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~-g 380 (983)
+.+++|.||+ ++|.|+|+++|. ++.|+|++|||+++.. ..+|.+++. +++|+++||.||+ +
T Consensus 189 ~~g~~g~lG~--~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~--~~LPvIfVV~NN~ya 264 (433)
T PLN02374 189 LLGGFAFIGE--GIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAAL--WKLPIVFVVENNLWA 264 (433)
T ss_pred CCCCceeccC--chhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHH--hCCCEEEEEeCCCEe
Confidence 3577789999 999999999993 5789999999999754 348999998 9999999998887 4
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH------HHHHHhhhccCCCEEEEEEcCcc-
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL------EEALSMSQHLGTDRVIEVESCID- 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL------~~aL~~a~~~~~p~lIeV~~~~~- 453 (983)
++.... . ....+|+.+.|++||+++++|+..+.+ +++++++.+.++|+|||+.+.+-
T Consensus 265 ig~~~~-----------~-----~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~ 328 (433)
T PLN02374 265 IGMSHL-----------R-----ATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 328 (433)
T ss_pred ecceee-----------e-----ccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecC
Confidence 444311 0 013579999999999999999977655 57778787788999999998541
Q ss_pred -------------------------------------cchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 454 -------------------------------------ANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 454 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-....+.++.+++++.+.+++..+.+++.|+.
T Consensus 329 GHs~~D~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 329 GHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred CcCCCCccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 02344456677888889999999988887764
No 138
>PRK05899 transketolase; Reviewed
Probab=99.44 E-value=3.5e-13 Score=162.90 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=102.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhcc-ch-HHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHDT-NG-LAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~~-~e-L~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|+||+ |+|+|+|+++|. +++|+|++|||+|+|+. +| |.|+++ +++|.+++|+|||+
T Consensus 115 ~~~G~lG~--gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~--~~L~~li~v~dnN~ 190 (624)
T PRK05899 115 TTTGPLGQ--GLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGH--LKLGNLIVIYDDNR 190 (624)
T ss_pred eCCcchhh--hHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHH--hCCCCEEEEEECCC
Confidence 45799999 999999999985 46899999999999985 55 999998 99999999999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|++.... .. ....||..++++||+++.+|+ +.++|.++|+++.+.++|++|+|.|.+.
T Consensus 191 ~~~~~~~-----------~~----~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~t~kg 250 (624)
T PRK05899 191 ISIDGPT-----------EG----WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAKTIIG 250 (624)
T ss_pred Ccccccc-----------cc----cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEEeEec
Confidence 9886321 11 124799999999999999999 9999999999998888999999999763
No 139
>PTZ00378 hypothetical protein; Provisional
Probab=99.26 E-value=2.6e-10 Score=127.88 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=180.5
Q ss_pred eeEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCE-----EEEeecCcC-------c-CcccHHHHHH
Q 041113 493 CKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSV-----GYGEVAPLE-------I-HKENLLDAEE 559 (983)
Q Consensus 493 mkI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~-----G~GE~~~~~-------~-~~~~~~~~~~ 559 (983)
++|++|..+.+- .+.| +++|-|+|++++|.. -.||+.-.. + .+..+.....
T Consensus 49 ~~I~~i~areIl--------DSrG--------nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~ 112 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPAG--------ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ 112 (518)
T ss_pred CeeeEEEEEEEE--------cCCC--------CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH
Confidence 579999988872 2222 678888999999843 012443221 1 1112222122
Q ss_pred HHHHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccc
Q 041113 560 QLRFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEE 636 (983)
Q Consensus 560 ~l~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~ 636 (983)
..+.|.|+|.++.+ +...+...+.+.... .+..+++-|+.+|+.-+.|+..++|||++||+.......
T Consensus 113 --~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks-------~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~ 183 (518)
T PTZ00378 113 --NSYFPRLLQLGARDQREFDSTLRAALSTSPLA-------NVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTS 183 (518)
T ss_pred --hhhHHHHcCCChHhHHHHHHHHHHhcCCCccc-------chhhHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccccc
Confidence 56899999988765 223332222222111 234678999999999999999999999999873100000
Q ss_pred cccccceeEEEEeecC---------------------CCCHHHHHHHHHHh---hhcCCCEEEEeccCC-----C---Ch
Q 041113 637 ISKRSTSIKICALIDS---------------------NKSPVEVASIATTL---VEEGFTAIKLKVARR-----A---DP 684 (983)
Q Consensus 637 ~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~~~---~~~G~~~~KiKig~~-----~---~~ 684 (983)
.....-++|+...+++ +.+..+..+...+. +..|+. .-+|.. . +.
T Consensus 184 ~~~~~lP~P~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~ 260 (518)
T PTZ00378 184 VETFSMPQLCITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANL 260 (518)
T ss_pred CCCcccCccceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCH
Confidence 0000122333222211 02222222211111 111221 112210 1 23
Q ss_pred HHHHHHHHHHHHHcC----CCcEEEEEcC--C--------------------------------CCCHHHHHHHHhhc-c
Q 041113 685 IKDAEVIQEVRKKVG----HRIELRVDAN--R--------------------------------NWTYQEALEFGFLI-K 725 (983)
Q Consensus 685 ~~d~~~v~~vr~~~g----~~~~l~vDaN--~--------------------------------~~~~~~a~~~~~~l-~ 725 (983)
++-++.|...-+..| .++.|-+|+- . ..|.+|.+++.+.+ +
T Consensus 261 eeAL~li~eAi~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~ 340 (518)
T PTZ00378 261 TDAVKLATEALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQ 340 (518)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHH
Confidence 333444433333333 3466666641 1 13567777776655 8
Q ss_pred cCC--CceeecCCC--ChHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHH
Q 041113 726 DCD--LQYIEEPVQ--NEEDIIKYCEES--GLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIA 798 (983)
Q Consensus 726 ~~~--i~~iEeP~~--~~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~ 798 (983)
+|. |.+||+|+. |+++|++|.+++ .+.|.+|.-..+.. ...++.-++.+ ++.+.+|++.+|.++++++.+
T Consensus 341 kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n---~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav 417 (518)
T PTZ00378 341 AVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSE---YKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIV 417 (518)
T ss_pred HCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCC---HHHHHHHHhcCCCceEEEccccceeHHHHHHHH
Confidence 898 999999999 899999999887 47888888776621 12455555544 688999999999999999999
Q ss_pred HHHHHcCCcEE---eCCCCchHHHHHHHHHHHhhch
Q 041113 799 RWAQRHGKMAV---VSAAFESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 799 ~~A~~~gi~~~---~~~~~es~ig~~a~~~laa~~~ 831 (983)
.+|+++|..++ ++|-.+ -=...+|||-++.
T Consensus 418 ~lA~~~g~~~v~v~vShRSG---eD~~IAdLAVa~g 450 (518)
T PTZ00378 418 RAVGEDEGRAVTVLVQTLAG---NAATAAHLAVAMG 450 (518)
T ss_pred HHHHHcCCcEEccccCCCcC---CccHHHHHHHHcC
Confidence 99999999987 787543 3455666766554
No 140
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.24 E-value=2.8e-11 Score=123.70 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=90.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+.|++|. ++|.|+|+++|. +++|+|++|||+|+ +...+|.++++ ++.|+++ |+|||+|++...
T Consensus 72 ~~~G~lG~--gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~--~~~~li~-vvdnN~~~~~~~---- 142 (195)
T cd02007 72 FGTGHSST--SISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGY--LKSNMIV-ILNDNEMSISPN---- 142 (195)
T ss_pred ECCCchhh--hHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHH--hCCCEEE-EEECCCcccCCC----
Confidence 45689999 999999999985 47999999999998 88899999998 7889866 666677765421
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceee-e--CCHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-V--KTKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v--~~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
.+ +...+++++|..... | .+.+++.++++++.+.++|++|++.|.+.
T Consensus 143 -------~~---------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~~T~kg 192 (195)
T cd02007 143 -------VG---------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHVVTKKG 192 (195)
T ss_pred -------CC---------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 00 477888899987653 4 58999999999998888999999998753
No 141
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.24 E-value=2.6e-10 Score=122.17 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHh
Q 041113 255 SLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIG 334 (983)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiG 334 (983)
.+....+++.|.+.+.++.+++.+.|- ...+...+.. .| +.+...-+.||- +.+.|.|
T Consensus 23 GCg~~~~~~~l~~a~g~~~vi~~~iGC----~s~~~~~~p~---~~-------------~~~~~~~~~fg~--~~a~a~G 80 (299)
T PRK11865 23 GCGAAIAMRLALKALGKNTVIVVATGC----LEVITTPYPE---TA-------------WNVPWIHVAFEN--AAAVASG 80 (299)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEeCCCc----ccccCccCcC---Cc-------------cccccchhhhcc--hHHHHHH
Confidence 467788899999999888888888887 4444322110 01 111122256677 8888888
Q ss_pred hhhcc-----CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-CCCC-ccccc----ccc
Q 041113 335 FAVGC-----NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA-DRTE-PRILD----QYF 402 (983)
Q Consensus 335 aalA~-----~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~-~~~~-~~~~~----~~~ 402 (983)
.+.|. +.+||++.|||+|.. .++.|.-+++ .+.++++||+||..|++.-..+-. .... ..... ...
T Consensus 81 i~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~--r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~ 158 (299)
T PRK11865 81 IERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAME--RGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSR 158 (299)
T ss_pred HHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHH--cCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccC
Confidence 88873 458999999998854 6899999998 799999999999999987432110 0000 00000 001
Q ss_pred c-cCCCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 403 Y-TTHNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 403 ~-~~~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
+ ..+..|+..++.++|+.++ .+.++.++.++|++|.+.+||++|+|....-..
T Consensus 159 G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~~ 215 (299)
T PRK11865 159 GEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQVLQPCPTG 215 (299)
T ss_pred CCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 1 1236899999999999876 456899999999999999999999999886553
No 142
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.15 E-value=1.1e-10 Score=140.00 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=98.6
Q ss_pred eecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
..+.|.+|. |+|.|+|+++|. +++|+|++|||+++ |+.++|.|+++ ++.|+ ++|+|||+|++-...
T Consensus 113 ~~~~G~lG~--gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~--~~~nl-i~IvdnN~~~i~~~~- 186 (580)
T PRK05444 113 TFGAGHSST--SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGD--LKSDL-IVILNDNEMSISPNV- 186 (580)
T ss_pred eECCChHHH--HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHh--hCCCE-EEEEECCCCcCCCcc-
Confidence 356699999 999999999985 46899999999995 99999999998 89998 688999999753211
Q ss_pred CCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
...... ....+..+++++||+++..+ ++.+++.++|+++.+.++|++|++.|.+..-
T Consensus 187 -------~~~~~~---~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T~kg~G 246 (580)
T PRK05444 187 -------GALSNY---LARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVTKKGKG 246 (580)
T ss_pred -------hhhhhh---hccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCcC
Confidence 000000 11246778999999999864 6999999999999888899999999988654
No 143
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.15 E-value=1.1e-09 Score=117.25 Aligned_cols=175 Identities=13% Similarity=0.047 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHhhcCCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCCcceeEeecCCCCCccchHHHHHhh
Q 041113 256 LTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGF 335 (983)
Q Consensus 256 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~mG~~g~lpaaiGa 335 (983)
....-+++.+.+.+.++.+++.|.|- .......+ + ...+.+..--..+|- +.+.|.|+
T Consensus 24 CG~~~~~~~l~~~lg~~~v~~~~iGC----~~~~~g~~-p---------------~~~~~~~~i~~~~G~--~~~~A~G~ 81 (300)
T PRK11864 24 CGAPLGLRYLLKALGEKTVLVIPASC----STVIQGDT-P---------------KSPLTVPVLHTAFAA--TAAVASGI 81 (300)
T ss_pred CCCHHHHHHHHHHhCCCeEEEeCCCc----cceecCCC-C---------------cccccccceeehhhC--hHHHHHHH
Confidence 44556668888888888888888887 22221111 1 011112222356777 99999999
Q ss_pred hhcc------CceEEEEEccchhh-hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCC-ccccccccccCC
Q 041113 336 AVGC------NKHVLCVVGDISFL-HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTE-PRILDQYFYTTH 406 (983)
Q Consensus 336 alA~------~~~vv~i~GDGsf~-~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~-~~~~~~~~~~~~ 406 (983)
+.|. +..|+++.|||++. ..++.|.-++. .++|+++||+||..|++.-...... ... .......-....
T Consensus 82 a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~--~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~ 159 (300)
T PRK11864 82 EEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAE--RNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREH 159 (300)
T ss_pred HHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHH--hCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCC
Confidence 9984 24577799999984 46788888888 7999999999999998874421110 000 000001111124
Q ss_pred CCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 407 NISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 407 ~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
..|...++.++|+.++ .+.++.++.+++++|++.+||++|++....-.
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~~~spC~~ 210 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIHLLAPCPP 210 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 6899999999999776 34478899999999999999999999987654
No 144
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.12 E-value=2.6e-10 Score=111.41 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCceEEEEccCCCh--hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcc
Q 041113 77 AEVLELVQGVNKGLLLVGAVHNE--DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSES 154 (983)
Q Consensus 77 ~~~~~~L~~AkrPvIl~G~g~~~--~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~ 154 (983)
+.++++|++||||+|++|.+++. .+.+++.+|+|++++||++|++ +.+.--.||++|+ |. ++|.+|..+..++
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~-~~~~~~~kgv~~~--~~--~lg~lg~~~~~p~ 99 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG-SYKGLIDKGVDAK--YI--NLHELTNYLKDPN 99 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc-cccccccCCccCC--cc--cHHHHHhhccCch
Confidence 57788999999999999999864 3567999999999999999997 2222222789988 76 4789999999888
Q ss_pred cccc---CCCCEEEEeCCccccHH-HHHHHHhcCCceEEEEc
Q 041113 155 VKDW---IQFDVIIQIGSRITSKR-ISQMIEECFPCTYILVD 192 (983)
Q Consensus 155 ~~~~---~~aDlvl~iG~~~~~~~-~~~~~~~~~~~~~i~id 192 (983)
.+.+ .++|+||.+|+++.-.. ...-+.++.+.+.|-++
T Consensus 100 ~e~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~~~~~~~~ 141 (171)
T PRK00945 100 WKGLDGNGNYDLVIFIGVTYYYASQGLSALKHFSPLKTITID 141 (171)
T ss_pred hhhhcCCCCcCEEEEecCCchhHHHHHHHHhhcCCceEEEec
Confidence 8888 79999999999974221 11223456565555444
No 145
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.9e-09 Score=110.99 Aligned_cols=275 Identities=16% Similarity=0.179 Sum_probs=162.1
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcC------------------cccHHH-HHHHHHHHHhHhccCccc--c---ccccc
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIH------------------KENLLD-AEEQLRFLLHFMTGAKIS--Y---FLPLL 580 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~------------------~~~~~~-~~~~l~~~~~~l~g~~~~--~---~~~~~ 580 (983)
.++|-|.++|+.|+. .. +.|.+.+ +..+.. +...-+.+.|.+++...+ + +..++
T Consensus 17 nPTVEVdL~T~~G~f-Ra-avPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~m 94 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVF-RA-AVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFM 94 (433)
T ss_pred CCceeEEEEecCcce-Ee-ecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHH
Confidence 678899999998842 22 2232211 222221 222224578888887433 2 22233
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCCC------
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK------ 654 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~~------ 654 (983)
..++.+...+. ....|+-||.+|+--+-|-..|+|||+.+..-..-.. ...-+||.+..++++.
T Consensus 95 i~LDGTeNKsk-------lGaNaIlgvSlavckagAa~k~vplykhia~lag~~~---~~vlPVPaFNVlNGGsHAGn~l 164 (433)
T KOG2670|consen 95 IELDGTENKSK-------LGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQ---PYVLPVPAFNVLNGGSHAGNKL 164 (433)
T ss_pred HhccCCccccc-------ccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCC---ceEecccceeeecCCccccchh
Confidence 32222222222 2357889999999999999999999998853220000 0123455554442211
Q ss_pred -------------CHHH-------HHHHHHHhhhcCCCEEEEeccCC----CC---hHHHHHHHHHHHHHcC--CCcEEE
Q 041113 655 -------------SPVE-------VASIATTLVEEGFTAIKLKVARR----AD---PIKDAEVIQEVRKKVG--HRIELR 705 (983)
Q Consensus 655 -------------~~~~-------~~~~~~~~~~~G~~~~KiKig~~----~~---~~~d~~~v~~vr~~~g--~~~~l~ 705 (983)
+-++ +-..++..+..-|-.----||.. ++ .++-++.|...-+..| .++.|-
T Consensus 165 AmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIg 244 (433)
T KOG2670|consen 165 AMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIG 244 (433)
T ss_pred hhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEE
Confidence 0011 11111112221222111223321 12 2344444433323334 357777
Q ss_pred EEcCC---------------------C-CCHHHHHHH-HhhcccCCCceeecCCC--ChHHHHHHHhhcCCcEEeCCCcc
Q 041113 706 VDANR---------------------N-WTYQEALEF-GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETID 760 (983)
Q Consensus 706 vDaN~---------------------~-~~~~~a~~~-~~~l~~~~i~~iEeP~~--~~~~~~~l~~~~~ipIa~dEs~~ 760 (983)
+|.-. . ++.++..++ -+.+.+|.+.-||+|+. ||+.|..+....++.|.+|.-..
T Consensus 245 mDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVgDDLtv 324 (433)
T KOG2670|consen 245 MDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVGDDLTV 324 (433)
T ss_pred EeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEecCcccc
Confidence 77521 2 356665444 44568999999999998 78888888888999999999877
Q ss_pred CcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 761 KFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
+- +.+....+.+..|+.+-+|+..+|.+|++++.+.+|++.|..+|++|-.
T Consensus 325 Tn---pkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRS 375 (433)
T KOG2670|consen 325 TN---PKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRS 375 (433)
T ss_pred cC---HHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccC
Confidence 63 3333344445568889999999999999999999999999999999974
No 146
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.08 E-value=5e-10 Score=108.74 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccc
Q 041113 77 AEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESV 155 (983)
Q Consensus 77 ~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~ 155 (983)
++++++|++||||+|++|+++. ..+.+++++|+|++|+||++|++ +.+.-.-||++ +||. .+|.++..+..++.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~-~~~~~~~kgv~--~~~~--~lg~~g~~~~~p~~ 92 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD-TYRALIEAGIE--SEEM--NLHEITQFLADPSW 92 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc-cccccccCCee--cCCC--CHHHHHHhccCchh
Confidence 5788899999999999999986 45678999999999999999997 42111126888 6776 37889999988888
Q ss_pred ccc---CCCCEEEEeCCcc
Q 041113 156 KDW---IQFDVIIQIGSRI 171 (983)
Q Consensus 156 ~~~---~~aDlvl~iG~~~ 171 (983)
+.+ .++|+||.+|+++
T Consensus 93 e~~~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 93 EGFDGEGNYDLVLFLGIIY 111 (162)
T ss_pred hhccCCCCcCEEEEeCCcc
Confidence 888 8999999999998
No 147
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=98.92 E-value=3.6e-08 Score=100.31 Aligned_cols=289 Identities=16% Similarity=0.216 Sum_probs=178.1
Q ss_pred eeEEEEEEEECCCCEEEEeecCcCcCcc----cHHH---HHHHH-HHHHhHhccCcccccccccccCchhhhhhhcCCCC
Q 041113 525 REGFILSLYLEDGSVGYGEVAPLEIHKE----NLLD---AEEQL-RFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPA 596 (983)
Q Consensus 525 ~~~~lv~v~t~~G~~G~GE~~~~~~~~~----~~~~---~~~~l-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (983)
-+.+.|.+..++|.+-||.|....|++. .+.. ....+ ..+.|.|+|++...+.+.- ..+..+ +..
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA------~vfe~l-~d~ 122 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNA------RVFEKL-IDG 122 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchh------HHhHhh-ccC
Confidence 5678888889999999999976544321 1111 11122 3477888998876543321 112222 123
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCChhhhcCCCCccccccccccceeEEEEeecCC--CCHHHHHHHHHHhhhcC-CCE
Q 041113 597 CEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSN--KSPVEVASIATTLVEEG-FTA 673 (983)
Q Consensus 597 ~~~~~~a~~aid~AlwDl~gk~~g~pv~~lLGg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~G-~~~ 673 (983)
..++.+.+.++..||.|+.+.+.+.--.+.+-.... ++....+||+|+..+.. ...++|+-.....+.+| |..
T Consensus 123 ~~LhtAvrYGvSQALl~Aaa~a~~tt~tevvcde~~----lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNs 198 (410)
T COG3799 123 NLLHTAVRYGVSQALLDAAALATGTTKTEVVCDEWQ----LPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINS 198 (410)
T ss_pred CcchHHHHhhHHHHHHHHHHHhhccchheeehhhhC----CCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhh
Confidence 456778899999999999998888664444432210 01124678998765211 11222222111111122 111
Q ss_pred EEEeccCC-----CChHHHHHHHHHHHHHcCCCcEEEEEcCCC------CCHHHHHHHHhhcccC--C-CceeecCCC--
Q 041113 674 IKLKVARR-----ADPIKDAEVIQEVRKKVGHRIELRVDANRN------WTYQEALEFGFLIKDC--D-LQYIEEPVQ-- 737 (983)
Q Consensus 674 ~KiKig~~-----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~------~~~~~a~~~~~~l~~~--~-i~~iEeP~~-- 737 (983)
+ -|+|.. +-++|=.+|+..++. -|..-.|-+|..+. +++.....+...|++. + ..+||-|+.
T Consensus 199 v-e~~G~dG~~l~Eyv~Wls~R~~~~g~-~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~pL~IEgP~DaG 276 (410)
T COG3799 199 V-EELGFDGEKLREYVRWLSDRILSKGT-SGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGLPLYIEGPVDAG 276 (410)
T ss_pred H-HHhCCchHHHHHHHHHHHHHHHhcCC-CCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCCceeeeccccCC
Confidence 1 123320 011222233333221 24566788998874 5665555666666542 1 469999997
Q ss_pred ----ChHHHHHHHh-----hcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEEcCCCcCCHHHHHHHHHHHHHcCCc
Q 041113 738 ----NEEDIIKYCE-----ESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVIKPSVIGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 738 ----~~~~~~~l~~-----~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~ 807 (983)
.++.|+++++ -+++.|..||.|.+..| ...+.+.+ ++.+|+|..-+|||.+..+.+.+|+.+.+.
T Consensus 277 s~~aQI~~~a~i~~~L~~~Gs~v~IVaDEwCnt~~D-----i~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~ 351 (410)
T COG3799 277 SKPAQIRLLAAITKELTRLGSGVKIVADEWCNTYQD-----IVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSME 351 (410)
T ss_pred CCHHHHHHHHHHHHHHhhcCCcceEeehhhcccHHH-----HHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccc
Confidence 3455555543 36799999999999865 33444443 688999999999999999999999999999
Q ss_pred EEeCCCC-chHHHHHHHHHHHhhch
Q 041113 808 AVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 808 ~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
.++++.. |+.++...++|++-+..
T Consensus 352 AYvGGtCnETdvSAr~cvHValAt~ 376 (410)
T COG3799 352 AYVGGTCNETDVSARTCVHVALATR 376 (410)
T ss_pred eeecccccccchhhhhhhhhhhhhc
Confidence 8887766 89999999999997754
No 148
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.79 E-value=1.3e-08 Score=108.33 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=56.5
Q ss_pred ceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCCC
Q 041113 908 QVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQNH 983 (983)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~~ 983 (983)
.+..+.+++++ +.+ ++...|.+. +|.|+|+|||+.++.+|+.++..|+.. |||+|+|+||||.|+.|.+
T Consensus 21 ~~~hk~~~~~g--I~~--h~~e~g~~~---gP~illlHGfPe~wyswr~q~~~la~~~~rviA~DlrGyG~Sd~P~~ 90 (322)
T KOG4178|consen 21 AISHKFVTYKG--IRL--HYVEGGPGD---GPIVLLLHGFPESWYSWRHQIPGLASRGYRVIAPDLRGYGFSDAPPH 90 (322)
T ss_pred hcceeeEEEcc--EEE--EEEeecCCC---CCEEEEEccCCccchhhhhhhhhhhhcceEEEecCCCCCCCCCCCCC
Confidence 35666666655 333 445556554 899999999999999999999999988 9999999999999999864
No 149
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=98.77 E-value=5.2e-08 Score=106.03 Aligned_cols=150 Identities=20% Similarity=0.211 Sum_probs=100.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc---C---ceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---N---KHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---~---~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
+..|..|- .+|-|.|+++|. + +-++|++|||+.-- ++.|-.+.+- -+++|+ |++++||+|+|- .+..
T Consensus 133 ~~~~iVg~--Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~-v~klPv-vf~ieNN~yAiS--vp~~ 206 (358)
T COG1071 133 GGSGIVGT--QIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAA-VWKLPV-VFVIENNQYAIS--VPRS 206 (358)
T ss_pred CCCceecc--cccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHH-HhcCCE-EEEEecCCceee--cchh
Confidence 34455555 999999999996 2 26889999999632 1222222222 279998 556667778875 1110
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHH----HHHHHhhhccCCCEEEEEEcCc------------
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVEL----EEALSMSQHLGTDRVIEVESCI------------ 452 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL----~~aL~~a~~~~~p~lIeV~~~~------------ 452 (983)
. +.....+..=|.+||+.+++|+ ++..+ ++|.+++.+.+||+|||+.+.+
T Consensus 207 -------~-----q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~ 274 (358)
T COG1071 207 -------R-----QTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSK 274 (358)
T ss_pred -------h-----cccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccc
Confidence 0 0112346668899999999998 44444 4455555667899999999987
Q ss_pred ---------------------------ccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 453 ---------------------------DANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 453 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
--+...+.++.+++.+.+.+|+.+++.++.|+.
T Consensus 275 YRskeE~~~~~~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~ 334 (358)
T COG1071 275 YRSKEEVEEWKKRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDV 334 (358)
T ss_pred cCCHHHHHHHhccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCh
Confidence 012334456677788888888888998887765
No 150
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.75 E-value=3.9e-08 Score=107.58 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=98.0
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh-ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH-DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~-~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+..+.+|- .+|.+.|.++|. +.-++|++|||+..- .+.|-..++. .+++||++||-|| +|++--.
T Consensus 97 ~~~~~~vg~--~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~-~~~lPvifvveNN-~~aist~---- 168 (300)
T PF00676_consen 97 LGASSPVGA--QVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAA-LWKLPVIFVVENN-QYAISTP---- 168 (300)
T ss_dssp EEEESSTTT--HHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHH-HTTTSEEEEEEEE-SEETTEE----
T ss_pred eeccccccc--cCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHh-hccCCeEEEEecC-CcccccC----
Confidence 455577777 889999999985 467889999999542 2333333333 2899996655555 5666421
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc------cc----
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI------DA---- 454 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~------~~---- 454 (983)
... .....++...|++||+++++|+ ++.++-++.++|+ +.+||+|||+.+.+ .+
T Consensus 169 ------~~~----~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~ 238 (300)
T PF00676_consen 169 ------TEE----QTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTF 238 (300)
T ss_dssp ------HHH----HCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGG
T ss_pred ------ccc----cccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccc
Confidence 010 1134568889999999999998 5666666655554 45899999999965 00
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+.++.+++.+.+..|+..+.+++.|++
T Consensus 239 yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 239 YRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp TSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G
T ss_pred cCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1233445556667777888888888777765
No 151
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=98.74 E-value=4.5e-08 Score=96.72 Aligned_cols=181 Identities=14% Similarity=0.200 Sum_probs=101.5
Q ss_pred ceeEEEEeecCCC--CHHHHHHHHHHhhhcC-CCEEEEeccCCCChHHHHHHHHHHHH----Hc--CCCcEEEEEcCCC-
Q 041113 642 TSIKICALIDSNK--SPVEVASIATTLVEEG-FTAIKLKVARRADPIKDAEVIQEVRK----KV--GHRIELRVDANRN- 711 (983)
Q Consensus 642 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~G-~~~~KiKig~~~~~~~d~~~v~~vr~----~~--g~~~~l~vDaN~~- 711 (983)
.+||+++..+... ..+++.-.-....-+| |..+. |+|. +-+.=.+.++-+++ .- +..-.|-+|..+.
T Consensus 4 ~pvpif~QsGddry~n~DKmIlK~~dvlPH~linnve-klG~--~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGti 80 (248)
T PF07476_consen 4 EPVPIFAQSGDDRYTNVDKMILKGVDVLPHALINNVE-KLGP--DGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTI 80 (248)
T ss_dssp ----EE---TT-TTHHHHHHHHTT-SEEEETT---CC-CC-T--TSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHH
T ss_pred CCCcccccCCchhhhhHHHHHHhCCCcCchHhhhCHH-HhCc--chHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchH
Confidence 4578887753211 2333332222223355 77888 9987 33333444433333 22 2345788999875
Q ss_pred ---C--CHHHHHHHHhhccc----CCCceeecCCC------ChHHHHHHHh-----hcCCcEEeCCCccCcCCChHHHHH
Q 041113 712 ---W--TYQEALEFGFLIKD----CDLQYIEEPVQ------NEEDIIKYCE-----ESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 712 ---~--~~~~a~~~~~~l~~----~~i~~iEeP~~------~~~~~~~l~~-----~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
| +++....++..|++ |. ..||.|+. +.+.+++|++ .+++.|.+||-|.++.| .+
T Consensus 81 G~~f~~d~~~~adYl~~l~~aA~P~~-L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eD-----I~ 154 (248)
T PF07476_consen 81 GLAFDNDPDRMADYLAELEEAAAPFK-LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLED-----IR 154 (248)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHTTS--EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHH-----HH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCe-eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHH-----HH
Confidence 2 56666666666644 54 48999997 3555666654 35689999999999875 44
Q ss_pred hhcCC-CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 772 KYAHP-GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 772 ~~~~~-~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
.+.+. .+|.+|||..-+||+.++.+.+-+|+++|+..+.+++. ||.++...++|+|-+..
T Consensus 155 ~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 155 EFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp HHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred HHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHHHHHHHhcC
Confidence 44444 46999999999999999999999999999999988777 89999999999998754
No 152
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.74 E-value=2.7e-08 Score=119.90 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=91.8
Q ss_pred cCCCCCccchHHHHHhhhhcc-CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-----
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA----- 390 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~----- 390 (983)
+.|+||+ ++++|+|++++. +++|+|++|||+| .|...++.++.+ +++|+ ++|+|||+|.+-.....-
T Consensus 121 ~~gslg~--a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~--~~~~l-i~I~dnN~~~i~~~~~~~~~~l~ 195 (641)
T PRK12571 121 SSTSISA--ALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGA--ADRRL-IVILNDNEMSIAPPVGALAAYLS 195 (641)
T ss_pred CcChHHH--HHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHH--hCCCE-EEEEECCCeeecCCccHHHHHHH
Confidence 4577888 899999999888 8999999999999 678899999998 89988 558888888764321000
Q ss_pred CCCCccccc-------cccc-cCCC---------------CCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhc-cCCC
Q 041113 391 DRTEPRILD-------QYFY-TTHN---------------ISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQH-LGTD 443 (983)
Q Consensus 391 ~~~~~~~~~-------~~~~-~~~~---------------~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~-~~~p 443 (983)
+......+. +... .+.. .-....=++||+++. .|+ +.++|.++|+++.+ .++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P 275 (641)
T PRK12571 196 TLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGP 275 (641)
T ss_pred HHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCC
Confidence 000000000 0000 0000 001356689999999 677 89999999998876 5899
Q ss_pred EEEEEEcCccc
Q 041113 444 RVIEVESCIDA 454 (983)
Q Consensus 444 ~lIeV~~~~~~ 454 (983)
.+|.+.|-+..
T Consensus 276 ~~I~~~T~kGk 286 (641)
T PRK12571 276 VLVHVVTEKGR 286 (641)
T ss_pred EEEEEEecCcc
Confidence 99999998754
No 153
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.69 E-value=5.3e-08 Score=108.11 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=56.9
Q ss_pred eeEEEEEEcc-cCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNS-KDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
...+.+++.. ++..++++|...|.+. +|+|||+||+++++..|..+++.|++ +|+|+++|+||||.|+++
T Consensus 19 ~~~~~~~~~~~~~~~~~i~y~~~G~~~---~~~lvliHG~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~ 90 (302)
T PRK00870 19 FAPHYVDVDDGDGGPLRMHYVDEGPAD---GPPVLLLHGEPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKP 90 (302)
T ss_pred CCceeEeecCCCCceEEEEEEecCCCC---CCEEEEECCCCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 3455566665 4455677777777644 78999999999999999999999985 599999999999999864
No 154
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.69 E-value=3.3e-07 Score=98.87 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=97.4
Q ss_pred CCCccchHHHHHhhhhcc-CceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC-CCCc-cc
Q 041113 322 ASGIDGLLSTAIGFAVGC-NKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD-RTEP-RI 397 (983)
Q Consensus 322 ~mG~~g~lpaaiGaalA~-~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~-~~~~-~~ 397 (983)
.-|- +.+.|.|.++|+ +..||++.||| ++-...+.|.-+.+ .|.+|++||+||..|+.-.-..-.. .... ..
T Consensus 71 ~~gr--a~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~--Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~ 146 (294)
T COG1013 71 LHGR--AAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALR--RNHDITYIVVDNEVYGNTGGQASPTTPKGAKTK 146 (294)
T ss_pred ccCc--chhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHH--cCCCeEEEEECCeecccCCCccCCCCCCCceee
Confidence 3445 899999999999 89999999999 77788999999998 7999999999999999864311000 0000 00
Q ss_pred cccccccC-CCCCHHHHHHHcCCcee---eeCCHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 398 LDQYFYTT-HNISIQNLCLAHGLNHV---QVKTKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 398 ~~~~~~~~-~~~df~~la~a~G~~~~---~v~~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
....-... ...|...+|-++|+.++ .+..+.++.+.+++|.+..||++|+|..+.-.
T Consensus 147 t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~~Gps~I~v~sPC~t 207 (294)
T COG1013 147 TTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEHKGPSFIDVLSPCPT 207 (294)
T ss_pred ecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhccCCeEEEEecCCCC
Confidence 00000011 34599999999998765 46689999999999999999999999987643
No 155
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.66 E-value=3.7e-08 Score=108.90 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=51.1
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+.+++++.+..+ +|...|+. +|+|||+|||++++.+|+.+++.|+++|+||++|+||||.|+.+
T Consensus 9 ~~~~~~~~~~~i----~y~~~G~~----~~~vlllHG~~~~~~~w~~~~~~L~~~~~vi~~DlpG~G~S~~~ 72 (294)
T PLN02824 9 ETRTWRWKGYNI----RYQRAGTS----GPALVLVHGFGGNADHWRKNTPVLAKSHRVYAIDLLGYGYSDKP 72 (294)
T ss_pred CCceEEEcCeEE----EEEEcCCC----CCeEEEECCCCCChhHHHHHHHHHHhCCeEEEEcCCCCCCCCCC
Confidence 344555544333 34555632 68999999999999999999999999999999999999999865
No 156
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.65 E-value=6.2e-07 Score=107.20 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=89.8
Q ss_pred cCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
..|..|- ++|.|+|+++|. ++.|+|++|||+++- ....|..|.. ++.|+ |+|+|||+|++-.......
T Consensus 111 ~~g~~~~--~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~--~k~~l-i~Ii~dN~~si~~~~~~~~ 185 (581)
T PRK12315 111 TVGHTST--SIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE--LKSNL-IIIVNDNQMSIAENHGGLY 185 (581)
T ss_pred CCCcHHH--HHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh--hCCCE-EEEEECCCCcCCCCCchhh
Confidence 3455555 999999999985 468999999999975 4555666666 78887 5555666676653211000
Q ss_pred CCCccccccccccCCCCCHHHHHHHcCCceeee-C--CHHHHHHHHHhhhccCCCEEEEEEcCcccc
Q 041113 392 RTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV-K--TKVELEEALSMSQHLGTDRVIEVESCIDAN 455 (983)
Q Consensus 392 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v-~--~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~ 455 (983)
..... .......+...++++||+++..| + +.+++.++++++.+.++|+||++.|.+..-
T Consensus 186 ----~~l~~-~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 186 ----KNLKE-LRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHIHTLKGKG 247 (581)
T ss_pred ----hhhhh-hhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEEEeecCCC
Confidence 00000 01112356778999999999998 5 899999999998877899999999997643
No 157
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.65 E-value=1.8e-07 Score=104.19 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=96.7
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc-cchHH-HHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD-TNGLA-ILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~-~~eL~-Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
.+..+.+|. ++|.|+|+++|. +..++|++|||+..-. +.|-. .+.. +++|+++||-||+ |++-...
T Consensus 134 ~~~~~~vG~--~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~--~~lPvvfvveNN~-~aist~~-- 206 (362)
T PLN02269 134 YGGHGIVGA--QVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAAL--WDLPVIFVCENNH-YGMGTAE-- 206 (362)
T ss_pred cccCchhhc--cccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhc--cCcCEEEEEeCCC-EeccCch--
Confidence 355577777 999999999985 4679999999996532 22222 2333 7999766666655 8764211
Q ss_pred CCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc---cCCCEEEEEEcCcc------c----
Q 041113 390 ADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH---LGTDRVIEVESCID------A---- 454 (983)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~---~~~p~lIeV~~~~~------~---- 454 (983)
.. .....+|. .+++++++++|+ ++.++.++++.+.+ .++|+|||+.+.+. +
T Consensus 207 ---------~~---~~~~~~~~--~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR~~gHs~~D~~~~ 272 (362)
T PLN02269 207 ---------WR---AAKSPAYY--KRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYRYHGHSMSDPGST 272 (362)
T ss_pred ---------hh---hccchHHH--HhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCcCCCcCCCCCCcc
Confidence 00 01223444 356788888887 67777776666542 28999999987651 0
Q ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 455 ------------------------------NATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 455 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
+...+.++.+++.+.+..|+.++.+++.|+.
T Consensus 273 YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~ 333 (362)
T PLN02269 273 YRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDP 333 (362)
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 1222334556677778888899888888764
No 158
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.64 E-value=1.2e-07 Score=106.20 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC----------CChHH-------------HHHHHHHHHHHcCCCcEEEEEcC---
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR----------ADPIK-------------DAEVIQEVRKKVGHRIELRVDAN--- 709 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~----------~~~~~-------------d~~~v~~vr~~~g~~~~l~vDaN--- 709 (983)
.+++++.++.+++.||..|+|+.+.. .+... .++.+++||+++|+++.|.+|.|
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 34567777788889999999998641 11222 37999999999999999999955
Q ss_pred ---CCCCHHHHHHHHhhcccCCCceee-----------cCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh
Q 041113 710 ---RNWTYQEALEFGFLIKDCDLQYIE-----------EPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 710 ---~~~~~~~a~~~~~~l~~~~i~~iE-----------eP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
++|+.++++++++.|+++++.||| .|+. +.+..+++++.+++||++++.+.+..+ +..
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~-----a~~ 307 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQ-----AEA 307 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHH
Confidence 889999999999999999999999 4663 346678899999999999999998753 556
Q ss_pred hcCCC-ceEEE
Q 041113 773 YAHPG-IVAIV 782 (983)
Q Consensus 773 ~~~~~-~~~i~ 782 (983)
+++.+ +|.|.
T Consensus 308 ~l~~g~aD~V~ 318 (336)
T cd02932 308 ILESGRADLVA 318 (336)
T ss_pred HHHcCCCCeeh
Confidence 66555 67764
No 159
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.60 E-value=9e-08 Score=105.83 Aligned_cols=53 Identities=30% Similarity=0.575 Sum_probs=47.0
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
++|...|+ +++|||+||++++...|+.+++.|+++|+||++|+||||.|+++.
T Consensus 19 i~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~L~~~~~via~D~~G~G~S~~~~ 71 (295)
T PRK03592 19 MAYIETGE-----GDPIVFLHGNPTSSYLWRNIIPHLAGLGRCLAPDLIGMGASDKPD 71 (295)
T ss_pred EEEEEeCC-----CCEEEEECCCCCCHHHHHHHHHHHhhCCEEEEEcCCCCCCCCCCC
Confidence 33456665 789999999999999999999999999999999999999998764
No 160
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.56 E-value=1.2e-07 Score=107.75 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=42.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||||||++++..|.++++.|+++|+||++|+||||.|+++
T Consensus 88 gp~lvllHG~~~~~~~w~~~~~~L~~~~~via~Dl~G~G~S~~~ 131 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRNIGVLAKNYTVYAIDLLGFGASDKP 131 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCC
Confidence 58999999999999999999999999999999999999999875
No 161
>PLN02790 transketolase
Probab=98.55 E-value=2.5e-07 Score=112.01 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=93.2
Q ss_pred eecCCCCCccchHHHHHhhhhccC---------------ceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGCN---------------KHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~~---------------~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|.+|. |+|.|+|.|+|.. ..|+|++|||+++= ..-.+..|.. +++|-+|+|+|||
T Consensus 101 ~~~tG~lG~--gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~--~~L~nli~i~d~N 176 (654)
T PLN02790 101 EVTTGPLGQ--GIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGH--WGLGKLIVLYDDN 176 (654)
T ss_pred cccCCchhc--hHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHH--hCCCCEEEEEecC
Confidence 355688999 9999999999852 46999999999864 4556666776 8999889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee----CCHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV----KTKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v----~~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+|.+-.... . ...-+..+..++||+++..| ++.++|.++++++.+ .++|++|++.|.+
T Consensus 177 ~~~i~~~~~-----------~----~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T~k 239 (654)
T PLN02790 177 HISIDGDTE-----------I----AFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTTTI 239 (654)
T ss_pred CccccCCcc-----------c----ccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEEee
Confidence 997753210 0 01246788999999999999 578899999999886 6899999999975
No 162
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.54 E-value=1.6e-07 Score=103.37 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred eeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 909 VLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++++.+++.+.. ++|...|+ +|+||||||++.++..|+.+++.|.++|+||++|+||||.|+.+
T Consensus 14 ~~~~~~~~~~~~----i~y~~~G~-----~~~iv~lHG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~ 77 (286)
T PRK03204 14 FESRWFDSSRGR----IHYIDEGT-----GPPILLCHGNPTWSFLYRDIIVALRDRFRCVAPDYLGFGLSERP 77 (286)
T ss_pred ccceEEEcCCcE----EEEEECCC-----CCEEEEECCCCccHHHHHHHHHHHhCCcEEEEECCCCCCCCCCC
Confidence 455566554433 33456665 68999999999999999999999999999999999999999865
No 163
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.54 E-value=1.6e-07 Score=102.79 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=41.7
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+||+++++..|.++++.|+++|+||++|+||||+|+.+
T Consensus 25 ~~plvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~ 68 (276)
T TIGR02240 25 LTPLLIFNGIGANLELVFPFIEALDPDLEVIAFDVPGVGGSSTP 68 (276)
T ss_pred CCcEEEEeCCCcchHHHHHHHHHhccCceEEEECCCCCCCCCCC
Confidence 47999999999999999999999999999999999999999865
No 164
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=98.54 E-value=1.6e-07 Score=106.66 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=48.9
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++++|...|+.. +|+|||||||+.++..|+.+++.|+++|+||++|+||||.|+++
T Consensus 115 ~~~~y~~~G~~~---~~~ivllHG~~~~~~~w~~~~~~L~~~~~Via~DlpG~G~S~~p 170 (383)
T PLN03084 115 FRWFCVESGSNN---NPPVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSDKP 170 (383)
T ss_pred eEEEEEecCCCC---CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCC
Confidence 444556667543 78999999999999999999999999999999999999999876
No 165
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.43 E-value=1.5e-06 Score=92.33 Aligned_cols=134 Identities=22% Similarity=0.314 Sum_probs=108.9
Q ss_pred ceeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEE
Q 041113 642 TSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVD 707 (983)
Q Consensus 642 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vD 707 (983)
..+|+..++ .+.+++++.+.++.+.+.||..+++++|.+ .+++...+.++++|+.++ +.+.++
T Consensus 53 ~~~p~~~qi-~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk 129 (231)
T cd02801 53 EERPLIVQL-GGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVK 129 (231)
T ss_pred cCCCEEEEE-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEE
Confidence 456777777 356799999999999889999999999863 145667889999999986 788999
Q ss_pred cCCCCCHH-HHHHHHhhcccCCCcee-------ec-CCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 708 ANRNWTYQ-EALEFGFLIKDCDLQYI-------EE-PVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 708 aN~~~~~~-~a~~~~~~l~~~~i~~i-------Ee-P~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
.|.+|+.+ ++.++++.+++.++.+| ++ +.. +++.++++++..++||.++..+.+..+ +..+++.
T Consensus 130 ~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d-----~~~~l~~ 204 (231)
T cd02801 130 IRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLED-----ALRCLEQ 204 (231)
T ss_pred EeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHH-----HHHHHHh
Confidence 99999776 89999999999999999 76 553 688888999999999999999998754 4445544
Q ss_pred -CceEEEE
Q 041113 777 -GIVAIVI 783 (983)
Q Consensus 777 -~~~~i~~ 783 (983)
++|.+.+
T Consensus 205 ~gad~V~i 212 (231)
T cd02801 205 TGVDGVMI 212 (231)
T ss_pred cCCCEEEE
Confidence 7888765
No 166
>PTZ00089 transketolase; Provisional
Probab=98.41 E-value=1.1e-06 Score=106.65 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=91.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|.+|. |++.|+|.|+|. +.+|+|++|||+++= ..-.+..+.. +++|-+|+|+|||+
T Consensus 113 ~~tG~lG~--gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~--~~L~nLi~i~d~N~ 188 (661)
T PTZ00089 113 VTTGPLGQ--GIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGH--LGLEKLIVLYDDNK 188 (661)
T ss_pred cCCcchhh--hHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHH--hCCCCEEEEEECCC
Confidence 34588999 999999999985 235999999999864 4555666666 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC----CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK----TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~----~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.+-... . . ...-++.+..++||+++..|. +.++|.++++++.+. ++|++|++.|-+
T Consensus 189 ~~i~~~~----------~-~----~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~P~~I~~~T~k 250 (661)
T PTZ00089 189 ITIDGNT----------D-L----SFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKSKGKPKLIIVKTTI 250 (661)
T ss_pred cccccCc----------c-c----ccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEEeee
Confidence 9775321 0 0 013478899999999999992 799999999998764 799999999875
No 167
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.39 E-value=7.7e-06 Score=84.74 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCC--CCcceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEF--PHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....+.-+|-..+ .+.+-++-|.|--...+.+.+.+.-.+ ..-|++-.-+.. +...-+-..+-|-.|. ++++|
T Consensus 44 LGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f-~TlRq~gGlSGF~~r~ES~~D~f~~GHsst--siSaa 120 (270)
T PF13292_consen 44 LGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRF-HTLRQYGGLSGFPKRSESEYDAFGAGHSST--SISAA 120 (270)
T ss_dssp HCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCG-GGTTSTTS--SS--TTT-TT--S--SSSS---HHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHh-chhhhcCCcCCCCCcccCCCCcccCCccHh--HHHHH
Confidence 33445555565544 355667778887555566666554433 222222110000 1111111233366677 99999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-----CCCCCcccccc
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-----ADRTEPRILDQ 400 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-----~~~~~~~~~~~ 400 (983)
+|.+.|+ ++.||+++|||++ .|..-.|-.+.. .+-++ +||+|+|+..|-...-. ......+.|.+
T Consensus 121 ~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~--~~~~l-iVILNDN~mSIs~nvGals~~L~~l~~~~~y~~ 197 (270)
T PF13292_consen 121 LGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGH--LKSNL-IVILNDNEMSISPNVGALSKYLSKLRSSPTYNK 197 (270)
T ss_dssp HHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHH--HT-SE-EEEEEE-SBSSSB--SSHCCC------------
T ss_pred HHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHh--cCCCE-EEEEeCCCcccCCCcchHHHHHHhccchhHHHH
Confidence 9999997 5899999999998 577777877776 56665 77788888766543100 00000001110
Q ss_pred cc-------cc-CC-------------CCCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhccCCCEEEEEEc
Q 041113 401 YF-------YT-TH-------------NISIQNLCLAHGLNHVQVK---TKVELEEALSMSQHLGTDRVIEVES 450 (983)
Q Consensus 401 ~~-------~~-~~-------------~~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~~p~lIeV~~ 450 (983)
.- .. .. .. ...+=+.+|+.|.-+- +.++|.++|+++.+.++|+||+|.|
T Consensus 198 ~k~~~~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~~gPvllHV~T 270 (270)
T PF13292_consen 198 LKEDVKSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGFDYIGPIDGHDLEELIEVLENAKDIDGPVLLHVIT 270 (270)
T ss_dssp --------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCSSSEEEEEEE-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 00 00 00 00 1123356688887543 7899999999999899999999986
No 168
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.37 E-value=2.5e-06 Score=95.74 Aligned_cols=123 Identities=19% Similarity=0.231 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC-------------------CCh----HHHHHHHHHHHHHcCCCcEEEEEcC---
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR-------------------ADP----IKDAEVIQEVRKKVGHRIELRVDAN--- 709 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~----~~d~~~v~~vr~~~g~~~~l~vDaN--- 709 (983)
.+++.+.++.+++.||..|-|+.+.. .++ .-.++.|++||+++|+++.|.+|.|
T Consensus 148 i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~ 227 (338)
T cd04733 148 IDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence 35567777778889999999998741 122 2236899999999999999999998
Q ss_pred ---CCCCHHHHHHHHhhcccCCCceee-------cCCCC--------------hHHHHHHHhhcCCcEEeCCCccCcCCC
Q 041113 710 ---RNWTYQEALEFGFLIKDCDLQYIE-------EPVQN--------------EEDIIKYCEESGLPVALDETIDKFQKD 765 (983)
Q Consensus 710 ---~~~~~~~a~~~~~~l~~~~i~~iE-------eP~~~--------------~~~~~~l~~~~~ipIa~dEs~~~~~~~ 765 (983)
++|+.++++++++.|++.++.||| +|... .+..+++++.+++||++++.+.+..
T Consensus 228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~-- 305 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRA-- 305 (338)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHH--
Confidence 579999999999999999999999 55521 2344688999999999999998865
Q ss_pred hHHHHHhhcCCC-ceEEEE
Q 041113 766 PLNMLEKYAHPG-IVAIVI 783 (983)
Q Consensus 766 ~~~~~~~~~~~~-~~~i~~ 783 (983)
.+..+++.+ +|.|.+
T Consensus 306 ---~a~~~l~~g~aD~V~l 321 (338)
T cd04733 306 ---AMEQALASGAVDGIGL 321 (338)
T ss_pred ---HHHHHHHcCCCCeeee
Confidence 355556544 787653
No 169
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=98.35 E-value=4.5e-06 Score=89.84 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCChHHHHHHHHHHHHHc-CCCcEEEEEcCC-------CCCHHHHHHHHhh
Q 041113 653 NKSPVEVASIATTLVE-EGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANR-------NWTYQEALEFGFL 723 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~~~~d~~~v~~vr~~~-g~~~~l~vDaN~-------~~~~~~a~~~~~~ 723 (983)
..++++.++.+.+.++ .||.- +++++. |.+.. +-+ ..+-.-.++... ..|.++.+++...
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ial--D~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~ 144 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIAL--DVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKD 144 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEE--E--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeec--cccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHH
Confidence 3577888887777765 89988 888875 22211 112 011233333322 3588888877665
Q ss_pred c-ccCCCceeecCCC--ChHHHHHHHhhcC--CcEEeCCCccCcCCChHHHHHhhcCC-CceEEEEcCCCcCCHHHHHHH
Q 041113 724 I-KDCDLQYIEEPVQ--NEEDIIKYCEESG--LPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVIKPSVIGGFENAGLI 797 (983)
Q Consensus 724 l-~~~~i~~iEeP~~--~~~~~~~l~~~~~--ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~k~~~~GGl~~~~~~ 797 (983)
| ++|.|.+||+|+. |+++|++|.++++ +-|.+|.-..+- + .++...++. .++.+.+|+..+|.+|++++.
T Consensus 145 li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn---~-~ri~~~i~~~~~na~llK~NQigTvte~lea 220 (295)
T PF00113_consen 145 LIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTN---P-KRIKKGIEKKACNALLLKPNQIGTVTETLEA 220 (295)
T ss_dssp HHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT----H-HHHHHHHHCT--SEEEE-HHHHSSHHHHHHH
T ss_pred HHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccc---h-hhhhccchhhhccchhhhhhhhHHHHHHHHH
Confidence 5 8899999999999 8999999999887 899999876652 2 345554544 478999999999999999999
Q ss_pred HHHHHHcCCcEEeCCCC-chHHHHHHHHHHHhhch
Q 041113 798 ARWAQRHGKMAVVSAAF-ESGLGLSAYIIFSSYLE 831 (983)
Q Consensus 798 ~~~A~~~gi~~~~~~~~-es~ig~~a~~~laa~~~ 831 (983)
+++|+++|..++++|.. ||-= ...+|||-++.
T Consensus 221 ~~~a~~~g~~~vvS~rsgEteD--~~iadLaVg~~ 253 (295)
T PF00113_consen 221 VKLAKSAGWGVVVSHRSGETED--TFIADLAVGLG 253 (295)
T ss_dssp HHHHHHTT-EEEEE--SS--S----HHHHHHHHTT
T ss_pred HHHHHHCCceeeccCCCCCcCc--hhHHHHHhccC
Confidence 99999999999999976 3422 24455555543
No 170
>PRK12753 transketolase; Reviewed
Probab=98.34 E-value=1.6e-06 Score=104.94 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=92.3
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
...|.+|. |++.|+|.|+|. +.+|+|++|||+++= ..-.+..|.. +++|-+|+|+|||+
T Consensus 111 ~~tG~lG~--gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~--~kL~nLi~ivd~N~ 186 (663)
T PRK12753 111 TTTGPLGQ--GLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGT--LGLGKLIGFYDHNG 186 (663)
T ss_pred cCCCcccc--cHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHH--HCCCCEEEEEECCC
Confidence 45689999 999999999984 257999999999874 3455556666 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceee-eC--CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-VK--TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
+.+-... ... .+-|+.+..++||+++.. |+ +.++|.++++++.+ .++|++|++.|-+-
T Consensus 187 ~~i~~~~-----------~~~----~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~~T~kG 248 (663)
T PRK12753 187 ISIDGET-----------EGW----FTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIICRTIIG 248 (663)
T ss_pred CcCCCCh-----------hhh----cChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeec
Confidence 8775321 111 124788999999999985 77 78899999998875 48999999998863
No 171
>PRK12754 transketolase; Reviewed
Probab=98.33 E-value=2.4e-06 Score=102.64 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=91.6
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHG 380 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g 380 (983)
..-|.+|. |++.|+|.|+|. +.+|+|++|||+++=. .-.+..|.. ++||.+|+|++||+
T Consensus 111 ~stG~LGq--Gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~--~kL~nLi~ivD~N~ 186 (663)
T PRK12754 111 TTTGPLGQ--GIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGT--LKLGKLIAFYDDNG 186 (663)
T ss_pred ccCCcccc--hHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHH--hCCCCEEEEEEcCC
Confidence 45589999 999999999984 3579999999999852 344555665 89998899999999
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceee-eC--CHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQ-VK--TKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~-v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+++--. .... ...|+.+-.++||.++.+ |+ +.+++.+|++++.+ .++|++|++.|-+
T Consensus 187 ~~idg~-----------~~~~----~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 187 ISIDGH-----------VEGW----FTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAVTDKPSLLMCKTII 247 (663)
T ss_pred CccCcc-----------hhhc----cCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhcCCCCEEEEEEeee
Confidence 876521 1111 135899999999999998 66 78999999998875 5899999999886
No 172
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.33 E-value=1.2e-06 Score=96.01 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=49.3
Q ss_pred eEEEEEEcccCce-eEEEEeecCCccCCCCceEEEeCCCCCChhhHHHH---HHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFC-SFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI---MKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 910 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~---~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
..+.+.++..+.. ++++|...|+ +|+|||+|||+.+...|..+ +..| .++|+|+++|+||||+|+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~y~~~g~-----~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~ 77 (282)
T TIGR03343 6 TSKFVKINEKGLSNFRIHYNEAGN-----GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAV 77 (282)
T ss_pred cceEEEcccccccceeEEEEecCC-----CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 3455556554442 5566676665 78999999999998888643 4445 45699999999999999864
No 173
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.33 E-value=1.1e-06 Score=96.91 Aligned_cols=115 Identities=20% Similarity=0.229 Sum_probs=84.4
Q ss_pred cCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGG 381 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~ 381 (983)
.-|++|. |++.|+|.|+|. +.+|+||+|||.++= +.-.+..|.+ ++|+=+|+|+++|+.
T Consensus 109 stGsLGq--Gl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~--~~L~nLi~i~D~N~~ 184 (332)
T PF00456_consen 109 STGSLGQ--GLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH--YKLDNLIVIYDSNGI 184 (332)
T ss_dssp --SSTTH--HHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH--TT-TTEEEEEEEESE
T ss_pred eccchhc--chhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH--hCCCCEEEEEecCCc
Confidence 4589999 999999999984 357999999999986 3556677777 899877777777766
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
.+--. .+.. ..-|..+--++||.+..+| ++.++|.+||+++... ++|++|.+.|-.
T Consensus 185 q~dg~-----------~~~~----~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 185 QIDGP-----------TDIV----FSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVK 244 (332)
T ss_dssp ETTEE-----------GGGT----HHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-T
T ss_pred ccCCC-----------cccc----cchHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEE
Confidence 44311 1111 1246788889999999999 5899999999999765 899999999875
No 174
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.32 E-value=2.7e-06 Score=103.06 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=91.4
Q ss_pred eecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNH 379 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~ 379 (983)
....|++|. |+|.|+|+|+|. +.+|+|++|||+++= ..-.+..|.. ++||-+|+|++||
T Consensus 106 ~~~tG~lG~--gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~--~~L~nLi~ivd~N 181 (653)
T TIGR00232 106 EATTGPLGQ--GIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGH--LKLGKLIVLYDSN 181 (653)
T ss_pred eeCCcchhc--cHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHH--hCCCcEEEEEeCC
Confidence 355689999 999999999974 245999999999875 2344555555 8999889999999
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee-C--CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV-K--TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v-~--~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+|.+-... +.. ...++.+..++||.++.+| + +.+++.+|++++.+. ++|++|++.|-+
T Consensus 182 ~~~i~~~~-----------~~~----~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 182 RISIDGAV-----------DGS----FTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEVTTTI 243 (653)
T ss_pred Ceeecccc-----------ccc----cCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 98775221 111 1247899999999999999 4 688999999988765 489999999865
No 175
>PLN02578 hydrolase
Probab=98.32 E-value=9.8e-07 Score=100.20 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=45.1
Q ss_pred EeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 927 VQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 927 ~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
|...|+ +|||||+||+++++..|..+++.|+++|+|+++|+||||.|+++
T Consensus 80 Y~~~g~-----g~~vvliHG~~~~~~~w~~~~~~l~~~~~v~~~D~~G~G~S~~~ 129 (354)
T PLN02578 80 YVVQGE-----GLPIVLIHGFGASAFHWRYNIPELAKKYKVYALDLLGFGWSDKA 129 (354)
T ss_pred EEEcCC-----CCeEEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCc
Confidence 355564 78999999999999999999999999999999999999999875
No 176
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.27 E-value=1.5e-06 Score=94.78 Aligned_cols=54 Identities=33% Similarity=0.609 Sum_probs=46.7
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++...|... +|+|||+||++++...|..+++.|+++|+|+++|+||||.|+.+
T Consensus 18 ~~~~~~g~~~---~~~vv~~hG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~S~~~ 71 (278)
T TIGR03056 18 WHVQDMGPTA---GPLLLLLHGTGASTHSWRDLMPPLARSFRVVAPDLPGHGFTRAP 71 (278)
T ss_pred EEEEecCCCC---CCeEEEEcCCCCCHHHHHHHHHHHhhCcEEEeecCCCCCCCCCc
Confidence 3345556543 78999999999999999999999999999999999999999864
No 177
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.27 E-value=1.4e-06 Score=93.81 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=42.5
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
+|+|||+||++++...|..+...|+++|+||++|+||||.|..+.
T Consensus 16 ~~~iv~lhG~~~~~~~~~~~~~~l~~~~~vi~~D~~G~G~s~~~~ 60 (255)
T PRK10673 16 NSPIVLVHGLFGSLDNLGVLARDLVNDHDIIQVDMRNHGLSPRDP 60 (255)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHhhCCeEEEECCCCCCCCCCCC
Confidence 799999999999999999999999999999999999999998653
No 178
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.26 E-value=1.6e-06 Score=92.81 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=52.9
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~~ 982 (983)
.+.+.+......+++...... . +++|+|||||+|++...|-..++.|++.++|+++|+||+|+|++|.
T Consensus 67 ~~~v~i~~~~~iw~~~~~~~~-~---~~~plVliHGyGAg~g~f~~Nf~~La~~~~vyaiDllG~G~SSRP~ 134 (365)
T KOG4409|consen 67 KKYVRIPNGIEIWTITVSNES-A---NKTPLVLIHGYGAGLGLFFRNFDDLAKIRNVYAIDLLGFGRSSRPK 134 (365)
T ss_pred eeeeecCCCceeEEEeecccc-c---CCCcEEEEeccchhHHHHHHhhhhhhhcCceEEecccCCCCCCCCC
Confidence 344445444444544433322 2 2789999999999999999999999999999999999999999985
No 179
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=98.24 E-value=6.4e-06 Score=86.29 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=96.6
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
++|.|-.|- .+|.+.|+++|. +.-++++-|||+..-. +-|--.++. -++||++ +|..||.|||=-...
T Consensus 161 yGGnGIVGA--QiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~-LW~LP~I-FvCENN~yGMGTs~~-- 234 (394)
T KOG0225|consen 161 YGGNGIVGA--QIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAA-LWKLPVI-FVCENNHYGMGTSAE-- 234 (394)
T ss_pred cCccceecc--CCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHH-HhCCCEE-EEEccCCCccCcchh--
Confidence 466677777 899999999996 3567789999997532 112112222 1689985 555556687742210
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHhh----hccCCCEEEEEEcCc------------
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSMS----QHLGTDRVIEVESCI------------ 452 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~a----~~~~~p~lIeV~~~~------------ 452 (983)
+ ....+||=+=. .| +++.+|+- .-.+++|.+.| ++.+||.|+|+.|-+
T Consensus 235 ---------R---asa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~s 300 (394)
T KOG0225|consen 235 ---------R---ASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTS 300 (394)
T ss_pred ---------h---hhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcc
Confidence 0 01233433322 22 67777773 33344554444 455899999999877
Q ss_pred ----------------------------ccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCc
Q 041113 453 ----------------------------DANATFHSMLRKFARQSADHTLNVLSQFSVPDT 485 (983)
Q Consensus 453 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (983)
-.....++++-.++++.+++|+.++..+++|+.
T Consensus 301 YRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~ 361 (394)
T KOG0225|consen 301 YRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEP 361 (394)
T ss_pred cchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 123556777889999999999999999999975
No 180
>PRK06489 hypothetical protein; Provisional
Probab=98.20 E-value=2.2e-06 Score=97.59 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=37.8
Q ss_pred CceEEEeCCCCCChhhHH--HHHHHh--------hCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI--PIMKAV--------SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~--~~~~~l--------~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||+++++..|. .+.+.| +++|+||++|+||||+|+.+
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p 122 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP 122 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC
Confidence 589999999999998886 555544 67899999999999999865
No 181
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.19 E-value=4.9e-06 Score=96.55 Aligned_cols=44 Identities=30% Similarity=0.603 Sum_probs=38.7
Q ss_pred CceEEEeCCCCCChhhHHH-HHHHhh----CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIP-IMKAVS----GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~-~~~~l~----~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+|||+++..+|.. +++.|+ ++|+||++|+||||+|+++
T Consensus 201 k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p 249 (481)
T PLN03087 201 KEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP 249 (481)
T ss_pred CCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC
Confidence 5799999999999999986 456665 5799999999999999876
No 182
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.18 E-value=9.5e-05 Score=81.03 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=80.7
Q ss_pred ceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC-CCCC-ccccccccccCCCCCHHHHHHHc
Q 041113 341 KHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA-DRTE-PRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 341 ~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~-~~~~-~~~~~~~~~~~~~~df~~la~a~ 417 (983)
..|+++.||| ++-..++.|.-+.+ -+.+|++||+||..|++-....-. .... .......-......|...++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~--r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLA--SGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHH--cCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 5899999999 56788999988887 688999999999999986321000 0000 00000100112357999999999
Q ss_pred CCcee-e--eC-CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHV-Q--VK-TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~-~--v~-~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|+.|+ + +. ++.++.+++++|.+.+||.+|+|..+.-
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAYDGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcCCCCEEEEEEccCc
Confidence 98765 3 43 7899999999999999999999998764
No 183
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.16 E-value=4.9e-06 Score=87.89 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=83.0
Q ss_pred EeecCCCCCccchHHHHHhhhhcc---C-------ceEEEEEccchh--hhccchHHHHHhhccCCC---EEEEEEeCCC
Q 041113 316 VAGNRGASGIDGLLSTAIGFAVGC---N-------KHVLCVVGDISF--LHDTNGLAILKQRMKRKP---ILMLVINNHG 380 (983)
Q Consensus 316 ~~~~~G~mG~~g~lpaaiGaalA~---~-------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lp---v~iiV~NN~g 380 (983)
..++-+-+|. ..|.|+|++.|. + .-+|++.|||+| +=.+.|-..+++ -.++| +++||.| |+
T Consensus 108 l~~npS~l~~--~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~-l~~lp~gg~ifvveN-Nq 183 (265)
T cd02016 108 LAPNPSHLEA--VNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSN-LPGYTTGGTIHIVVN-NQ 183 (265)
T ss_pred ecCCCccccc--ccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHH-hcCCCCCCEEEEEEe-CC
Confidence 4456677777 899999999986 2 245789999997 334555555444 26787 5555555 56
Q ss_pred CccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCcc
Q 041113 381 GAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCID 453 (983)
Q Consensus 381 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~~ 453 (983)
|++--.. .. .....+..+.|++||+++++|+ +++++.++.+.|. +.++|+|||+.+.+.
T Consensus 184 ~g~sT~~-----------~~---~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 184 IGFTTDP-----------RD---SRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred EEEEecH-----------HH---hcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 7765211 00 0124578899999999999998 6777766666554 458999999999873
No 184
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.12 E-value=6.5e-06 Score=70.77 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=39.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+..|+++||++.++..|..+++.|.+. |.|+++|+||||+|+.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~g 59 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSEG 59 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCCC
Confidence 678999999999999999999999775 9999999999999984
No 185
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.11 E-value=1.2e-05 Score=96.98 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=88.0
Q ss_pred cCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCC
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIAD 391 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~ 391 (983)
+-|..|. ++|.|+|.++|. +..|+|++|||+++- ..-.+..+.. +++|+ ++|+|||+|++-.......
T Consensus 109 ~~G~~g~--~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~--~~l~~-i~ii~~N~~~i~~~~~~~~ 183 (617)
T TIGR00204 109 SAGHSST--SISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGD--LKTDM-IVILNDNEMSISENVGALS 183 (617)
T ss_pred CCCchHh--HHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHh--cCCCE-EEEEECCCcccCCCchHHH
Confidence 4577788 999999999985 468999999999864 4555666666 89998 8888999987653210000
Q ss_pred -----CCCccccc-------cccccCCC-CC-H-H-------------HHHHHcCCcee-eeC--CHHHHHHHHHhhhcc
Q 041113 392 -----RTEPRILD-------QYFYTTHN-IS-I-Q-------------NLCLAHGLNHV-QVK--TKVELEEALSMSQHL 440 (983)
Q Consensus 392 -----~~~~~~~~-------~~~~~~~~-~d-f-~-------------~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~ 440 (983)
.+..+.|. ......+. .+ + . .+-++||+.+. .|+ +.++|.++|+.+.+.
T Consensus 184 ~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~~ 263 (617)
T TIGR00204 184 NHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAKKL 263 (617)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHhcC
Confidence 00000000 00000000 01 1 1 13677999888 666 899999999988777
Q ss_pred CCCEEEEEEcCcccc
Q 041113 441 GTDRVIEVESCIDAN 455 (983)
Q Consensus 441 ~~p~lIeV~~~~~~~ 455 (983)
++|++|+|.|.+-.-
T Consensus 264 ~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 264 KGPVFLHIQTKKGKG 278 (617)
T ss_pred CCCEEEEEEecCCCC
Confidence 899999999987554
No 186
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.11 E-value=1.5e-05 Score=89.46 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CCh----HHHHHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADP----IKDAEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~----~~d~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.++.+.+.||..|+|+.+.+ .++ ....+.+++||+++|+++.|.++.|
T Consensus 141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~ 220 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF 220 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc
Confidence 4566777777889999999998731 011 1226899999999999999998887
Q ss_pred --CCCCHHHHHHHHhhcccCCCceee-------cCCC-----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHH
Q 041113 710 --RNWTYQEALEFGFLIKDCDLQYIE-------EPVQ-----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 710 --~~~~~~~a~~~~~~l~~~~i~~iE-------eP~~-----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~ 769 (983)
++|+.++++++++.|+++++.||+ +|.. +.+..+.+++.+++||++.+.+.+..+
T Consensus 221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~----- 295 (327)
T cd02803 221 VPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEV----- 295 (327)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHH-----
Confidence 457999999999999999999994 5432 345567888889999999999988653
Q ss_pred HHhhcCC-CceEEEE
Q 041113 770 LEKYAHP-GIVAIVI 783 (983)
Q Consensus 770 ~~~~~~~-~~~~i~~ 783 (983)
+..+++. ++|.|.+
T Consensus 296 a~~~l~~g~aD~V~i 310 (327)
T cd02803 296 AEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHCCCCCeeee
Confidence 5555555 6787654
No 187
>PRK05855 short chain dehydrogenase; Validated
Probab=98.10 E-value=5.7e-06 Score=100.82 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=45.2
Q ss_pred EeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 927 VQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 927 ~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+...|.+. +|+|||+|||++++..|.++++.|.++|+|+++|+||||.|+.+
T Consensus 17 ~~~~g~~~---~~~ivllHG~~~~~~~w~~~~~~L~~~~~Vi~~D~~G~G~S~~~ 68 (582)
T PRK05855 17 VYEWGDPD---RPTVVLVHGYPDNHEVWDGVAPLLADRFRVVAYDVRGAGRSSAP 68 (582)
T ss_pred EEEcCCCC---CCeEEEEcCCCchHHHHHHHHHHhhcceEEEEecCCCCCCCCCC
Confidence 34445433 78999999999999999999999988899999999999999864
No 188
>PHA02857 monoglyceride lipase; Provisional
Probab=98.08 E-value=6.4e-06 Score=90.05 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=38.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.+.|+|+|||++++..|..+++.|.+ +|+|+++|+||||.|+.
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~ 68 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNG 68 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccCCCCCCCCC
Confidence 45666779999999999999999976 59999999999999974
No 189
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.06 E-value=1.4e-05 Score=91.62 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=90.1
Q ss_pred CCccchHHHHHhhhhccCceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccc
Q 041113 323 SGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQY 401 (983)
Q Consensus 323 mG~~g~lpaaiGaalA~~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~ 401 (983)
||- +++.|-|+.++..+++|+++|||+|.|+ +..|..|+. .+.+++++|++|..=.|--..+... .++ ..
T Consensus 430 mGs--sig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~--n~~~~~~vvLdN~~tAMTGgQp~pg----~~~-~~ 500 (640)
T COG4231 430 MGS--SIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY--NKANILVVVLDNRTTAMTGGQPHPG----TGV-AA 500 (640)
T ss_pred ccc--hhhhccccccccCCceEEEeccccccccCcHHHHHHHh--cCCCeEEEEEeccchhccCCCCCCC----ccc-cc
Confidence 444 6777777777778999999999999996 788999997 7899999999999887764322111 011 11
Q ss_pred ccc-CCCCCHHHHHHHcCCceeee---CCHHHHHHHHHhhhccCCCEEEEEE
Q 041113 402 FYT-THNISIQNLCLAHGLNHVQV---KTKVELEEALSMSQHLGTDRVIEVE 449 (983)
Q Consensus 402 ~~~-~~~~df~~la~a~G~~~~~v---~~~~eL~~aL~~a~~~~~p~lIeV~ 449 (983)
.++ ...++.+.+++++|+..+.+ -+.+++.++++++++..+|+||=..
T Consensus 501 ~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak 552 (640)
T COG4231 501 EGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAK 552 (640)
T ss_pred CCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEc
Confidence 122 24689999999999987654 3688999999999999999887654
No 190
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.01 E-value=2.9e-05 Score=87.66 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CC----hHHHHHHHHHHHHHcCCCcEEE-----EEc
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------AD----PIKDAEVIQEVRKKVGHRIELR-----VDA 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~----~~~d~~~v~~vr~~~g~~~~l~-----vDa 708 (983)
+++.+.++.+++.||..++|+.+.+ .+ ....++.|++||+++|+++.+. .|.
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~ 216 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence 4566677777889999999987421 11 3445789999999999997765 565
Q ss_pred C-CCCCHHHHHHHHhhcccCCC-------ceeecCCCC----------hHHHHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 N-RNWTYQEALEFGFLIKDCDL-------QYIEEPVQN----------EEDIIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 N-~~~~~~~a~~~~~~l~~~~i-------~~iEeP~~~----------~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+ ++|+.++++++++.|+++++ .|.|+|++. .+..+++++.+++||+..+.+.+.. .+
T Consensus 217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~-----~a 291 (353)
T cd02930 217 VEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPE-----VA 291 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHH-----HH
Confidence 4 66899999999999999885 456777651 2234688999999999999999875 35
Q ss_pred HhhcCCC-ceEEE
Q 041113 771 EKYAHPG-IVAIV 782 (983)
Q Consensus 771 ~~~~~~~-~~~i~ 782 (983)
..+++.+ +|.+.
T Consensus 292 ~~~i~~g~~D~V~ 304 (353)
T cd02930 292 ERLLADGDADMVS 304 (353)
T ss_pred HHHHHCCCCChhH
Confidence 5666544 67765
No 191
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.99 E-value=3.9e-05 Score=91.37 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=88.1
Q ss_pred eecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI 389 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~ 389 (983)
..+-|.+|. ||++|+|.|+|. +.+|+|++|||+++ +.+-.+..+.+ ++-+ ++||+|+|+..+....+.
T Consensus 173 ~~~tGslg~--glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~--~~~n-livIlddN~~~~~~~~q~ 247 (641)
T PLN02234 173 SFGTGHSST--TLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGY--LHSN-MIVILNDNKQVSLPTANL 247 (641)
T ss_pred EECCCchHH--HHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhh--hCCC-EEEEEECCCCCccccccc
Confidence 355689999 999999999986 46899999999986 45566666664 4545 567777777643321000
Q ss_pred CCCCCc-cccccccc---cCCC---CCHHHHHHHcCCcee-eeC--CHHHHHHHHHhhhcc--CCCEEEEEEcCcccc
Q 041113 390 ADRTEP-RILDQYFY---TTHN---ISIQNLCLAHGLNHV-QVK--TKVELEEALSMSQHL--GTDRVIEVESCIDAN 455 (983)
Q Consensus 390 ~~~~~~-~~~~~~~~---~~~~---~df~~la~a~G~~~~-~v~--~~~eL~~aL~~a~~~--~~p~lIeV~~~~~~~ 455 (983)
...... ....++.. .... -+....-++||+++. .|+ +.++|.++|+++.+. ++|.+|.+.|-+..-
T Consensus 248 ~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkG 325 (641)
T PLN02234 248 DGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRG 325 (641)
T ss_pred CCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCC
Confidence 000000 00000000 0000 145678899999999 787 899999999987643 589999999987653
No 192
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.97 E-value=0.00017 Score=86.12 Aligned_cols=192 Identities=11% Similarity=0.106 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccCCCCC--cceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPH--QWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~G~mG~~g~lpaa 332 (983)
+....+.-+|-..+ .+.+-|+-|.|--...+.+.+.+...+ .. |++-.-+..+. ..-+-..+-|-.+. ++++|
T Consensus 123 LGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f-~~-Rq~~GlsGf~~r~ES~~D~f~~GHssT--SiSaa 198 (701)
T PLN02225 123 FAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAI-PS-RQKNGISGVTSQLESEYDSFGTGHGCN--SISAG 198 (701)
T ss_pred ccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhc-Cc-cccCCcCCCCCCCCCCCCCCCCChHHH--HHHHH
Confidence 45556655665544 345566668876444455555554443 22 44321111111 11111223355566 89999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCC----ccccccc
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTE----PRILDQY 401 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~----~~~~~~~ 401 (983)
+|.+.|+ ++.||+++|||++ .|..-.|-.+.. .+-+ +|||+|+|..+|-+....+.... ..+..+.
T Consensus 199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~--~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l 275 (701)
T PLN02225 199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGY--LDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKI 275 (701)
T ss_pred HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhc--cCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHH
Confidence 9999996 5689999999998 566677777765 4556 58889999988876511000000 0000000
Q ss_pred -----cc-----------cCCCC--CH---------------H-HHHHHcCCceeeeC---CHHHHHHHHHhhhccC--C
Q 041113 402 -----FY-----------TTHNI--SI---------------Q-NLCLAHGLNHVQVK---TKVELEEALSMSQHLG--T 442 (983)
Q Consensus 402 -----~~-----------~~~~~--df---------------~-~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~--~ 442 (983)
|. ..+.. .+ . .+=+.||++|.-+- +.++|.++|+++.+.+ +
T Consensus 276 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~ 355 (701)
T PLN02225 276 QSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMG 355 (701)
T ss_pred hccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCC
Confidence 00 00000 00 1 24467788887543 7899999999987765 9
Q ss_pred CEEEEEEcCccc
Q 041113 443 DRVIEVESCIDA 454 (983)
Q Consensus 443 p~lIeV~~~~~~ 454 (983)
|+||+|.|.+..
T Consensus 356 PvlvHv~T~KGk 367 (701)
T PLN02225 356 PVLVHVITEENR 367 (701)
T ss_pred CEEEEEEecCCC
Confidence 999999998874
No 193
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=97.93 E-value=7.6e-05 Score=74.68 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=83.9
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~ 390 (983)
.+-|++|. |+|.|+|.+++. +.+|++++|||-..- ++-...++++ |+|.=+|.+++-|.... .
T Consensus 116 ~stGSLGq--GLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah--~~L~NLiaivD~N~~Ql----d-- 185 (243)
T COG3959 116 VSTGSLGQ--GLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAH--YKLDNLIAIVDRNKLQL----D-- 185 (243)
T ss_pred ecCCcccc--cchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHH--hccCcEEEEEecCCccc----C--
Confidence 44588898 888888888874 579999999999864 4566778887 99965555554443211 0
Q ss_pred CCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhcc-CCCEEEEEEcC
Q 041113 391 DRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQHL-GTDRVIEVESC 451 (983)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~~-~~p~lIeV~~~ 451 (983)
...+.. .+.-++..-=+|||.+..+|+ +.+++.++|+.+... ++|.+|=+.+-
T Consensus 186 -----G~t~~i---~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 186 -----GETEEI---MPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred -----Cchhhc---cCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 011111 123468888899999999998 699999999999764 49999987654
No 194
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=97.92 E-value=4.6e-05 Score=84.23 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=64.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|++|. |++.|+|.|+|. +.+|+||+|||.++= ..-.+..+.+ ++++=+|+|+|+|+..+
T Consensus 115 ~sTGSLGq--GLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~--~kL~NLivIvD~N~~qi 190 (386)
T cd02017 115 FPTVSMGL--GPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAR--EKLDNLIFVVNCNLQRL 190 (386)
T ss_pred eCCchHHH--HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHH--hCCCCEEEEEECCCCcc
Confidence 45589999 999999988853 367999999999974 4555666666 89866777888777644
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~ 425 (983)
--. .+.. . ...-|+.+.-+|||.+...|+
T Consensus 191 dG~-----------t~~v-~-~~~e~l~~kf~AfGW~vi~V~ 219 (386)
T cd02017 191 DGP-----------VRGN-G-KIIQELEGIFRGAGWNVIKVI 219 (386)
T ss_pred CCc-----------cccc-c-cCchhHHHHHHhcCCEEEEEe
Confidence 311 0000 0 012478888999999999884
No 195
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=97.89 E-value=1.5e-05 Score=87.02 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=39.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||++.++..|.+++..|.+ +|+|+++|+||||.|..
T Consensus 18 ~p~vvliHG~~~~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~ 61 (273)
T PLN02211 18 PPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQS 61 (273)
T ss_pred CCeEEEECCCCCCcCcHHHHHHHHHhCCCEEEEecccCCCCCCC
Confidence 78999999999999999999999975 69999999999998753
No 196
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.87 E-value=2.3e-05 Score=90.30 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=41.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
+|+|||+||++.+...|..+++.|+++|+|+++|+||||.|+++
T Consensus 105 ~p~vvllHG~~~~~~~~~~~~~~L~~~~~vi~~D~rG~G~S~~~ 148 (402)
T PLN02894 105 APTLVMVHGYGASQGFFFRNFDALASRFRVIAIDQLGWGGSSRP 148 (402)
T ss_pred CCEEEEECCCCcchhHHHHHHHHHHhCCEEEEECCCCCCCCCCC
Confidence 78999999999999999999999998999999999999999865
No 197
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=7.9e-05 Score=85.70 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred ecCCCCCccchHHHHHhhhhcc---------------CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC---------------NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGG 381 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~---------------~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~ 381 (983)
..-|.+|. |++.|+|.++|. +..|+||+|||++|=. .+|-...+- .++|.=+|++.++|..
T Consensus 113 ~TTGPLGQ--GianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG-~l~L~kLIvlyD~N~I 189 (663)
T COG0021 113 ATTGPLGQ--GLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAG-HLKLGKLIVLYDSNDI 189 (663)
T ss_pred eccCccch--hHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHh-hcCCCcEEEEEeCCCc
Confidence 44599999 999999999972 3689999999999975 344443332 3899888999998877
Q ss_pred ccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 382 AIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK---TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 382 g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
.|--. .+.. .+-|..+=-+|||.+..++. +.+++.+|+++|.+ .++|++|+|+|-..
T Consensus 190 siDG~-----------~~~~----f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiIG 250 (663)
T COG0021 190 SIDGD-----------TSLS----FTEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTIIG 250 (663)
T ss_pred eeccC-----------cccc----cchhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeeee
Confidence 65421 1111 13467778899999999665 49999999999987 67999999998753
No 198
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.87 E-value=3.8e-05 Score=87.10 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=38.6
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+|||+++.. .|..+.+.|++ +|+|+++|+||||.|+.+
T Consensus 87 ~~~iv~lHG~~~~~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 87 KAAVCFCHGYGDTCTFFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred CeEEEEECCCCCccchHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 678999999999876 47899999976 699999999999999864
No 199
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.86 E-value=2.5e-05 Score=80.58 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=52.4
Q ss_pred EEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCCCC
Q 041113 911 RYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~ 981 (983)
...+.+++....++.++....... +|.++|+||.|.|..+|..+...|..+ .+|+|+||||||+|...
T Consensus 50 kedv~i~~~~~t~n~Y~t~~~~t~---gpil~l~HG~G~S~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~ 119 (343)
T KOG2564|consen 50 KEDVSIDGSDLTFNVYLTLPSATE---GPILLLLHGGGSSALSFAIFASELKSKIRCRCLALDLRGHGETKVE 119 (343)
T ss_pred ccccccCCCcceEEEEEecCCCCC---ccEEEEeecCcccchhHHHHHHHHHhhcceeEEEeeccccCccccC
Confidence 444566666655555555443323 899999999999999999999988654 89999999999998754
No 200
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=97.86 E-value=6.9e-05 Score=77.18 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=72.5
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhcc-chHHHHHh--hccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDT-NGLAILKQ--RMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~-~eL~Ta~~--~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
..-|.+|+ +++.|+|+++.+ +..|+|++|||.+.=.. ...|-+.+ ..+++.-++.|++||+|.|-...
T Consensus 59 ~~~G~LG~--gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt------ 130 (227)
T cd02011 59 HEGGELGY--SLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPT------ 130 (227)
T ss_pred ecccchhh--HHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCc------
Confidence 44589999 999999999987 88999999999965321 22233221 01456566777788888775221
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhhc
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQH 439 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~~ 439 (983)
.. .....-++.+..++||.+.+.|+ +++++.++++++++
T Consensus 131 ---~~----~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~ 171 (227)
T cd02011 131 ---IL----ARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLD 171 (227)
T ss_pred ---cc----cccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHH
Confidence 00 11124578999999999999997 55566666665553
No 201
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=97.82 E-value=0.0003 Score=80.67 Aligned_cols=194 Identities=14% Similarity=0.065 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHhhc-CCCceEEEecCcchhhhhhhcCCCcccccccccccccC-CC-CCcceeEeecCCCCCccchHHHH
Q 041113 256 LTEPHVAHELSRAL-TSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLNS-EF-PHQWIRVAGNRGASGIDGLLSTA 332 (983)
Q Consensus 256 ~~~~~~~~~l~~~l-~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~-~~~~~~~~~~~G~mG~~g~lpaa 332 (983)
+-...+.-+|-... .+.+.++-|.|--..-+.+.+.+.-.+ ..=|++-.-+ +. +...-+-..+-|-.+. ++++|
T Consensus 48 LGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~e~f-~tlRq~~GlsGf~~r~ESe~D~f~~GHsST--SiSaa 124 (627)
T COG1154 48 LGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRREQF-DTLRQKDGLSGFPKREESEHDWFGVGHSST--SISAA 124 (627)
T ss_pred cChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCchhhc-chhhhcCCCCCCCCcccCCCcccccCchHH--HHHHH
Confidence 44455555565544 345666667776333344444332221 1111111000 00 1111111223355556 89999
Q ss_pred Hhhhhcc-----CceEEEEEccchh--hhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-----CCCCCccccc-
Q 041113 333 IGFAVGC-----NKHVLCVVGDISF--LHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-----ADRTEPRILD- 399 (983)
Q Consensus 333 iGaalA~-----~~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-----~~~~~~~~~~- 399 (983)
+|.+.|. ++.||+++|||++ .|.+-.|-.+-. +.+-| .|||+|+|...|-.+.-. ........|+
T Consensus 125 lG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~-~~~~~-~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~ 202 (627)
T COG1154 125 LGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGA-DLKSN-LIVILNDNEMSISPNVGALSKHLARLRSGPFYQS 202 (627)
T ss_pred hhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhh-ccCCC-EEEEEeCCCcccCCCccHHHHHHHHHhccchHHH
Confidence 9999884 5789999999997 566666666542 12344 588889998776533100 0000000000
Q ss_pred ------cc---cccC---------CC----CCHHHHHHHcCCceeeeC---CHHHHHHHHHhhhccCCCEEEEEEcCccc
Q 041113 400 ------QY---FYTT---------HN----ISIQNLCLAHGLNHVQVK---TKVELEEALSMSQHLGTDRVIEVESCIDA 454 (983)
Q Consensus 400 ------~~---~~~~---------~~----~df~~la~a~G~~~~~v~---~~~eL~~aL~~a~~~~~p~lIeV~~~~~~ 454 (983)
+. ++.. .+ .....+=+.||++|.-.- +.++|..+|+.+.+.++|+||+|.|.+..
T Consensus 203 ~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd~~gPvllHv~T~KGK 282 (627)
T COG1154 203 LREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKDLKGPVLLHVVTKKGK 282 (627)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 00 0000 00 111236677899887543 79999999999999999999999998753
No 202
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=97.81 E-value=7.6e-05 Score=89.77 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=81.8
Q ss_pred ecCCCCCccchHHHHHhhhhcc-----CceEEEEEccchhh--hccchHHHHHhhccCCCEEEEEEeCCCC-cc------
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-----NKHVLCVVGDISFL--HDTNGLAILKQRMKRKPILMLVINNHGG-AI------ 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-----~~~vv~i~GDGsf~--~~~~eL~Ta~~~~~~lpv~iiV~NN~g~-g~------ 383 (983)
.+-|.+|. +++.|+|.|+|. ++.|+|++|||++. +..-.|-.+.. +++|+++||-|| +. .+
T Consensus 141 ~~~G~~g~--~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~--~~~~li~iv~~N-~~~s~~~~~~~ 215 (677)
T PLN02582 141 FGTGHSST--TISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGY--LDSDMIVILNDN-KQVSLPTATLD 215 (677)
T ss_pred eccchhhh--hHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHh--hCcCEEEEEECC-CCccccccccC
Confidence 45588899 999999999985 56899999999986 44556666665 788865555444 44 11
Q ss_pred --ccCCCCCCC-------CCccccc-------cccccCCCC--CH-H---------------HHHHHcCCcee-eeC--C
Q 041113 384 --FSLLPIADR-------TEPRILD-------QYFYTTHNI--SI-Q---------------NLCLAHGLNHV-QVK--T 426 (983)
Q Consensus 384 --~~~~~~~~~-------~~~~~~~-------~~~~~~~~~--df-~---------------~la~a~G~~~~-~v~--~ 426 (983)
-+.. +.. +....+. +.....+.. ++ . .+-++||+.|. .|+ +
T Consensus 216 s~~~~v--g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd 293 (677)
T PLN02582 216 GPAPPV--GALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 293 (677)
T ss_pred CCCCCc--cHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCC
Confidence 1110 000 0000000 000000000 00 0 24678999987 555 8
Q ss_pred HHHHHHHHHhhhcc--CCCEEEEEEcCccc
Q 041113 427 KVELEEALSMSQHL--GTDRVIEVESCIDA 454 (983)
Q Consensus 427 ~~eL~~aL~~a~~~--~~p~lIeV~~~~~~ 454 (983)
.++|.++|+++.+. ++|+||.|.|-+..
T Consensus 294 ~~~L~~al~~~k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 294 IDDLVTILREVKSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 99999999998764 69999999998854
No 203
>PRK10749 lysophospholipase L2; Provisional
Probab=97.80 E-value=4.8e-05 Score=85.52 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||++.+...|..++..|. .+|+|+++|+||||.|+++
T Consensus 54 ~~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 98 (330)
T PRK10749 54 DRVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHRGQGRSGRL 98 (330)
T ss_pred CcEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCC
Confidence 5799999999999999999987664 5699999999999999753
No 204
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.78 E-value=4.1e-05 Score=87.60 Aligned_cols=50 Identities=30% Similarity=0.593 Sum_probs=43.7
Q ss_pred eecCCccCCCCceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCCC
Q 041113 928 QEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 928 ~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
...|.+. +++|||+|||+++...|..+.+.|.+.|+|+++|+||||.|..
T Consensus 124 ~~~g~~~---~~~vl~~HG~~~~~~~~~~~~~~l~~~~~v~~~d~~g~G~s~~ 173 (371)
T PRK14875 124 LRLGEGD---GTPVVLIHGFGGDLNNWLFNHAALAAGRPVIALDLPGHGASSK 173 (371)
T ss_pred ecccCCC---CCeEEEECCCCCccchHHHHHHHHhcCCEEEEEcCCCCCCCCC
Confidence 4445433 7899999999999999999999999889999999999999954
No 205
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=97.78 E-value=0.00018 Score=88.50 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=85.0
Q ss_pred eEeecCCCCCccchHHHHHhhhhcc----C-------ceEEEEEccchh--hhccchHHHHHhhccCCCE--EEEEEeCC
Q 041113 315 RVAGNRGASGIDGLLSTAIGFAVGC----N-------KHVLCVVGDISF--LHDTNGLAILKQRMKRKPI--LMLVINNH 379 (983)
Q Consensus 315 ~~~~~~G~mG~~g~lpaaiGaalA~----~-------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lpv--~iiV~NN~ 379 (983)
....|-+-++. -.|.+.|.+.|. + .-+|++.|||+| +=.+.|--.++. -+++|+ +|+|+.||
T Consensus 309 ~l~~npSHLea--v~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~-l~~lPvGGtIfvveNN 385 (929)
T TIGR00239 309 ALAFNPSHLEI--VSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSK-LRGYSVGGTIHIIINN 385 (929)
T ss_pred eecCCCccccc--ccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHH-hcCCCCCCEEEEEEeC
Confidence 34566677888 899999999985 2 245889999998 334445444443 278998 66666667
Q ss_pred CCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 380 GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 380 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+|++--.. .. ........+.|++||+++++|+ +++....+.+.|. +.+||+|||+.+.+
T Consensus 386 qyg~tT~~-----------~~---~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR 450 (929)
T TIGR00239 386 QIGFTTNP-----------LD---ARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 (929)
T ss_pred CEEEEEcH-----------HH---hcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 78775210 00 0123467889999999999998 6777766666654 45799999999976
No 206
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.74 E-value=2e-05 Score=87.61 Aligned_cols=42 Identities=38% Similarity=0.680 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~ 979 (983)
+|||||+|||+++..+|+.+++.|++. ++|+++|++|||.|+
T Consensus 58 ~~pvlllHGF~~~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s 101 (326)
T KOG1454|consen 58 KPPVLLLHGFGASSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS 101 (326)
T ss_pred CCcEEEeccccCCcccHhhhccccccccceEEEEEecCCCCcCC
Confidence 799999999999999999999999988 999999999999444
No 207
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=97.70 E-value=0.00018 Score=88.99 Aligned_cols=116 Identities=14% Similarity=0.071 Sum_probs=79.7
Q ss_pred cCCCCCccchHHHHHhhhhcc-----C------ceEEEEEccchh--hhccchHHHHHhhccCCC---EEEEEEeCCCCc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC-----N------KHVLCVVGDISF--LHDTNGLAILKQRMKRKP---ILMLVINNHGGA 382 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~-----~------~~vv~i~GDGsf--~~~~~eL~Ta~~~~~~lp---v~iiV~NN~g~g 382 (983)
+.+.+|. ..|.+.|++.|. + .-+|++.|||+| +=.+.|-..++. -+++| +++||.| |+|+
T Consensus 312 npShlea--v~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~-l~~lp~ggvIfvveN-Nq~g 387 (924)
T PRK09404 312 NPSHLEI--VNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQ-LRGYRTGGTIHIVIN-NQIG 387 (924)
T ss_pred Ccccccc--ccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHH-hcCCCCCCEEEEEEe-CCEE
Confidence 3456777 899999999986 3 356889999998 334455444443 25776 6555555 5676
Q ss_pred cccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 383 IFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+--.. .. .....+..++|++||+++++|+ +++.+..+.+.|+ +.+||+|||+.+.+
T Consensus 388 ~tT~~-----------~~---~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 388 FTTSP-----------PD---DRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred EeeCH-----------HH---hccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 65211 00 0123457889999999999988 6777766666654 45899999999987
No 208
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=97.69 E-value=5.8e-05 Score=83.92 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhhHHHHHHHh-hCCCEEEEEcCCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIMKAV-SGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~~~l-~~~~~vi~~Dl~G~G~S~~~ 981 (983)
++|...|.+. +++|||+||+++++..| .+...+ .++|+||++|+||||+|+.+
T Consensus 17 l~y~~~g~~~---~~~lvllHG~~~~~~~~-~~~~~~~~~~~~vi~~D~~G~G~S~~~ 70 (306)
T TIGR01249 17 LYYEQSGNPD---GKPVVFLHGGPGSGTDP-GCRRFFDPETYRIVLFDQRGCGKSTPH 70 (306)
T ss_pred EEEEECcCCC---CCEEEEECCCCCCCCCH-HHHhccCccCCEEEEECCCCCCCCCCC
Confidence 3445556533 68999999998887655 344444 35799999999999999854
No 209
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.62 E-value=9.2e-05 Score=83.25 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++.|||+|||+.+.. .|..+...|.+ +|+|+++|+||||.|+.
T Consensus 59 ~~~VvllHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~ 103 (330)
T PLN02298 59 RALIFMVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEG 103 (330)
T ss_pred ceEEEEEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCC
Confidence 567999999987653 56777777875 59999999999999974
No 210
>PRK07581 hypothetical protein; Validated
Probab=97.60 E-value=6.9e-05 Score=84.64 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=35.2
Q ss_pred CceEEEeCCCCCChhhHHHHH---HHhh-CCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIM---KAVS-GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~---~~l~-~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+|||+||+++++..|..++ +.|. ++|+||++|+||||.|+.+
T Consensus 41 ~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~ 88 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSP 88 (339)
T ss_pred CCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCC
Confidence 456777788887888887665 4675 5799999999999999865
No 211
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=97.59 E-value=5.3e-05 Score=85.67 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChh------------hHHHHHH---Hh-hCCCEEEEEcCCCCCCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGE------------EWIPIMK---AV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~------------~w~~~~~---~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
++|...|+. ++|+|||||+++++. .|..+++ .| +++|+||++|+||||.|..
T Consensus 48 l~y~~~G~~----~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~ 115 (343)
T PRK08775 48 LRYELIGPA----GAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPARFRLLAFDFIGADGSLD 115 (343)
T ss_pred EEEEEeccC----CCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccccEEEEEeCCCCCCCCC
Confidence 334555642 457888887777766 7999996 57 5789999999999998853
No 212
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.58 E-value=0.00016 Score=82.79 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=40.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||++++...|..+.+.|.+ .|+|+++|+||||+|+..
T Consensus 136 ~~~Vl~lHG~~~~~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 136 RGILIIIHGLNEHSGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred ceEEEEECCchHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 57899999999999999999999965 699999999999999864
No 213
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.53 E-value=9.7e-05 Score=84.65 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=39.1
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChhh-------------HHHHH----HHhhCCCEEEEEcCCCC-CCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGEE-------------WIPIM----KAVSGSARCISIDLPGH-GGSK 979 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~~-------------w~~~~----~~l~~~~~vi~~Dl~G~-G~S~ 979 (983)
++|...|..+...+|+|||+||+++++.. |..++ ..++++|+||++|+||+ |.|+
T Consensus 35 ~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~ 107 (379)
T PRK00175 35 LAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGST 107 (379)
T ss_pred EEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCC
Confidence 34455554211126899999999999984 77876 34478899999999993 5454
No 214
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=97.50 E-value=0.00016 Score=78.66 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=35.8
Q ss_pred CceEEEeCCCCCChh-hHHHHHHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EWIPIMKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
+++|||+||+++++. .|..+...|.+ +|+|+++|+||||.|+.+
T Consensus 25 ~~~vl~~hG~~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~ 70 (288)
T TIGR01250 25 KIKLLLLHGGPGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQP 70 (288)
T ss_pred CCeEEEEcCCCCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCC
Confidence 689999999876654 55666677765 699999999999999865
No 215
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.49 E-value=0.00044 Score=86.97 Aligned_cols=112 Identities=18% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-.. +++||+.+|||.|+|+ +..|-.++. .+.+++++|+.|..=+|--..+
T Consensus 481 ~~MG~--eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~--~~~nit~~IL~N~~vAMTGgQ~---------- 546 (1165)
T PRK09193 481 TQMGG--EGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVA--AGVNITYKILYNDAVAMTGGQP---------- 546 (1165)
T ss_pred eccCC--cchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHh--cCCCeEEEEEeCCcccccCCCC----------
Confidence 45666 678888887776 7899999999999996 788888887 7999999999999887763211
Q ss_pred ccccccCCCCCHHHHHHHcCCceeeeC--CHHHH-----------------HHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQNLCLAHGLNHVQVK--TKVEL-----------------EEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL-----------------~~aL~~a~-~~~~p~lIeV 448 (983)
.-++...++..+++++.|++.+.|- ++.++ .+++++.+ +.+|++||=.
T Consensus 547 --~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 547 --VDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred --CCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 1112246789999999999887665 44444 34455555 5678776643
No 216
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=97.48 E-value=0.00024 Score=76.36 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.5
Q ss_pred CceEEEeCCCCCC----hhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGT----GEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~----~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
.++|||+|||+.+ ...|..+.+.|++ +|+|+++|+||||.|+.
T Consensus 25 ~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g 72 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAG 72 (266)
T ss_pred ceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
Confidence 4689999999864 4578888999975 59999999999999964
No 217
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.46 E-value=0.00059 Score=83.49 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=88.1
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|+|.|++. +++|+||+|||.++= +...+..|.+ ++|+=+|+|+|+|...+
T Consensus 186 ~sTGSLGq--Gl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~--~kLdNLi~IvD~N~~ql 261 (889)
T TIGR03186 186 FPTGSMGI--GPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAAR--ERLDNLVFVINCNLQRL 261 (889)
T ss_pred cCCCCchH--HHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEeCCCCcc
Confidence 45599999 999999999851 478999999999975 4566777777 89977788888887543
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeC--------------------------------------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVK-------------------------------------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~-------------------------------------- 425 (983)
--. ... . ....-++.+.-++||.+..+|.
T Consensus 262 DG~----------t~~-~--~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga 328 (889)
T TIGR03186 262 DGP----------VRG-N--GRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGA 328 (889)
T ss_pred CCc----------ccc-c--cccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchH
Confidence 211 000 0 0012368888899999988882
Q ss_pred ---------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 ---------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 ---------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+++++.+|+++|.+. ++|+||.+.|-+
T Consensus 329 ~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~PTvIla~Tvk 389 (889)
T TIGR03186 329 YNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRPTVILAKTMK 389 (889)
T ss_pred HHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 788899999888754 699999999876
No 218
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=97.44 E-value=0.00064 Score=64.28 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=69.0
Q ss_pred eEeEEEEEEEEeeCCCCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcC-----------------cCcccHHH
Q 041113 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-----------------IHKENLLD 556 (983)
Q Consensus 494 kI~~v~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~-----------------~~~~~~~~ 556 (983)
||++|..+.+= .+.| ++++-|+|.+++|..|.+-+.... |.+..+..
T Consensus 1 ~I~~v~~r~Il--------DsrG--------~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~ 64 (132)
T PF03952_consen 1 TITKVKAREIL--------DSRG--------NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSK 64 (132)
T ss_dssp BEEEEEEEEEE---------TTS---------EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHH
T ss_pred CeEEEEEEEEE--------cCCC--------CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccch
Confidence 58888877762 2222 789999999999988888543211 11122333
Q ss_pred HHHHH-HHHHhHhccCcccc---cccccccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 557 AEEQL-RFLLHFMTGAKISY---FLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 557 ~~~~l-~~~~~~l~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
..+.+ ..+.|.|+|.++.+ +..+|...+.+..++ ..-..+..|+.+|++-+.|+..|+|||++|
T Consensus 65 Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~-------~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 65 AVENVNEIIAPALIGLDPTDQEEIDQILIELDGTPNKS-------RLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTST-------TT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred hhhhHHHHHHHHHHhcchhhHHHhCccceeccCChhhh-------cccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 33444 35789999998876 333333222211111 233578899999999999999999999875
No 219
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=97.42 E-value=0.00016 Score=82.05 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.0
Q ss_pred EEEeecCCccCCCCceEEEeCCCCCChh-----------hHHHHH----HHhhCCCEEEEEcCCC--CCCCC
Q 041113 925 IKVQEIGQRIDIQDNILLFLHGFLGTGE-----------EWIPIM----KAVSGSARCISIDLPG--HGGSK 979 (983)
Q Consensus 925 ~~~~~~g~~~~~~~~~lv~lHG~~~~~~-----------~w~~~~----~~l~~~~~vi~~Dl~G--~G~S~ 979 (983)
++|...|..+...+++|||+||++++++ .|+.++ ..++++|+||++|+|| ||.|.
T Consensus 18 ~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~ 89 (351)
T TIGR01392 18 VAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTG 89 (351)
T ss_pred EEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCC
Confidence 3445555311011579999999999874 488887 4447789999999999 56554
No 220
>PRK05261 putative phosphoketolase; Provisional
Probab=97.40 E-value=0.00075 Score=81.55 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=79.2
Q ss_pred ecCCCCCccchHHHHHhhhhcc-CceEEEEEccchhhhcc-chHHHHHh--hccCCCEEEEEEeCCCCccccCCCCCCCC
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDT-NGLAILKQ--RMKRKPILMLVINNHGGAIFSLLPIADRT 393 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~~-~eL~Ta~~--~~~~lpv~iiV~NN~g~g~~~~~~~~~~~ 393 (983)
..-|.+|+ |++.|+|++++. +..|+|++|||.+.=.. ...|-+.+ ..+++.-++.|+++|+|.|-...
T Consensus 139 ~~~G~LG~--gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt------ 210 (785)
T PRK05261 139 HEGGELGY--SLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPT------ 210 (785)
T ss_pred eCCCchhh--HHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCc------
Confidence 34589999 999999999998 88999999999954321 11122111 01345555667777888775321
Q ss_pred CccccccccccCCCCCHHHHHHHcCCceeeeC--CHHHHHHH--------HH-------hhhcc---CCCE--EEEEEcC
Q 041113 394 EPRILDQYFYTTHNISIQNLCLAHGLNHVQVK--TKVELEEA--------LS-------MSQHL---GTDR--VIEVESC 451 (983)
Q Consensus 394 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~eL~~a--------L~-------~a~~~---~~p~--lIeV~~~ 451 (983)
.. .....-++.+..++||.+.+.|+ +++++.++ ++ +|... .+|. +|.+.+.
T Consensus 211 ---~~----~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~ 283 (785)
T PRK05261 211 ---IL----ARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTP 283 (785)
T ss_pred ---cc----cccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECC
Confidence 00 01123478999999999999987 55565555 22 22222 4888 9999988
Q ss_pred c
Q 041113 452 I 452 (983)
Q Consensus 452 ~ 452 (983)
+
T Consensus 284 k 284 (785)
T PRK05261 284 K 284 (785)
T ss_pred c
Confidence 7
No 221
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.00097 Score=76.05 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=87.5
Q ss_pred eecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccccCCC
Q 041113 317 AGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIFSLLP 388 (983)
Q Consensus 317 ~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~ 388 (983)
..+-|.+|. |+++|+|.|++. +.+|+|++|||+.+= .......|.. |+++-+|++++|+..++--.-
T Consensus 114 ~v~TG~lgQ--gis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~--l~ldnLVai~D~n~is~~g~t- 188 (632)
T KOG0523|consen 114 EVATGPLGQ--GISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGH--LKLDNLVAIYDNNKISIDGAT- 188 (632)
T ss_pred eeccCCccc--hHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhh--cccCCEEEEEccccccCCCCC-
Confidence 344589999 999999999975 469999999999874 3344555555 899988999988866543110
Q ss_pred CCCCCCccccccccccCCCCCHHH-HHHHcCCceeeeC--CHHHHHHHHHhhhc-cCCCEEEEEEcCcc
Q 041113 389 IADRTEPRILDQYFYTTHNISIQN-LCLAHGLNHVQVK--TKVELEEALSMSQH-LGTDRVIEVESCID 453 (983)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~df~~-la~a~G~~~~~v~--~~~eL~~aL~~a~~-~~~p~lIeV~~~~~ 453 (983)
...+..|..+ =.++||++...|+ +.++|.+++..+.. .++|..|-+.+-..
T Consensus 189 --------------~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt~i~~~t~~g 243 (632)
T KOG0523|consen 189 --------------SLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPTAIKATTFIG 243 (632)
T ss_pred --------------cccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCceeeeeeeeee
Confidence 0124566666 6799999999887 67888888888763 57899988887653
No 222
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.38 E-value=0.00083 Score=84.86 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-+. +++||+++|||.|+|+ +..|-.++. .+.|++++|++|..=.|--..
T Consensus 468 ~~MG~--~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~--~~~nit~~IL~N~~tAMTGgQ----------- 532 (1159)
T PRK13030 468 TQMGG--EGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVA--AGANITYKILYNDAVAMTGGQ----------- 532 (1159)
T ss_pred eccCc--cchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHh--cCCCeEEEEEeCCcccccCCC-----------
Confidence 45776 778899988877 7899999999999996 788888887 799999999999987775221
Q ss_pred ccccccCCCCCHHH---HHHHcCCceeeeC--CHHH----------------HHHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQN---LCLAHGLNHVQVK--TKVE----------------LEEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~---la~a~G~~~~~v~--~~~e----------------L~~aL~~a~-~~~~p~lIeV 448 (983)
.. +..++..+ ++++.|++.+.|- ++.+ ..+++++.+ +.+|++||=.
T Consensus 533 -p~---~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 533 -PV---DGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred -CC---CCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 12467777 6679999887764 3333 334556665 6678777643
No 223
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.28 E-value=0.00021 Score=76.56 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=40.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC----------CEEEEEcCCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS----------ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~----------~~vi~~Dl~G~G~S~~~~ 982 (983)
--||+++|||++|-..|-.+++.|.+. |.||+|-+||||.|+.+.
T Consensus 152 v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~s 206 (469)
T KOG2565|consen 152 VKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPS 206 (469)
T ss_pred ccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCc
Confidence 358999999999999999999988642 899999999999999875
No 224
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.28 E-value=0.00077 Score=70.18 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=73.1
Q ss_pred cceeEeecCCCCCccchHHHHHhhhhcc------CceEEEEEccchhhhc--cchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 312 QWIRVAGNRGASGIDGLLSTAIGFAVGC------NKHVLCVVGDISFLHD--TNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 312 ~~~~~~~~~G~mG~~g~lpaaiGaalA~------~~~vv~i~GDGsf~~~--~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
+++++++ .+-. .+|-|+|++.|. ++-+||..|||+.--. -..|--++- ...|+ |++..|+||.|
T Consensus 187 nf~tiss---plat--qlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAt--le~Pv-if~CRNNG~AI 258 (432)
T KOG1182|consen 187 NFVTISS---PLAT--QLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAAT--LECPV-IFFCRNNGWAI 258 (432)
T ss_pred ceEEecc---hhhh--ccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHH--hCCCE-EEEEcCCCeee
Confidence 3444443 3444 899999998874 4789999999985311 012222332 57897 45556667877
Q ss_pred ccCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeeeCCHHHH--HHHHHh----hhccCCCEEEEEEcCc
Q 041113 384 FSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVEL--EEALSM----SQHLGTDRVIEVESCI 452 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~eL--~~aL~~----a~~~~~p~lIeV~~~~ 452 (983)
-... .+.+-++. .+.-..+||+.+++|+--+-| -.|.++ ++..++|+|||..+-+
T Consensus 259 STpt----------seQyr~DG----Ia~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 259 STPT----------SEQYRGDG----IAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred cccc----------HHHhcCCc----eEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 5321 12221211 222345899999999965554 334444 4567899999998876
No 225
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.25 E-value=0.0017 Score=61.12 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=56.6
Q ss_pred HHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCcccc
Q 041113 78 EVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVK 156 (983)
Q Consensus 78 ~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~ 156 (983)
-++.++++||||++|+|..+. .+..+.+.+|+|+.++|+++|..+ .+.--=+|+=.+.|- +..++.+..++...
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~-~~~~~~~~i~~~~~~----lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASS-MGNLIGRGIGSEYIN----LHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchh-hcchhhcccccchhH----HHHHHHHhcCCCCC
Confidence 456789999999999999776 445678899999999999999853 100000122222211 12233333333222
Q ss_pred cc---CCCCEEEEeCCcc
Q 041113 157 DW---IQFDVIIQIGSRI 171 (983)
Q Consensus 157 ~~---~~aDlvl~iG~~~ 171 (983)
-+ -+.|+||.+|+..
T Consensus 102 G~dg~g~yDlviflG~~~ 119 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIY 119 (170)
T ss_pred CcCCCCCcceEEEEeccH
Confidence 22 3689999999985
No 226
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=97.15 E-value=0.0022 Score=79.07 Aligned_cols=117 Identities=19% Similarity=0.110 Sum_probs=87.7
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|||.|++. +++|+|++|||.++= +...+..+.+ ++|.=+|+|+|+|...+
T Consensus 200 ~~TGSlG~--G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~--~~LdNLi~ivD~N~~~l 275 (896)
T PRK13012 200 FPTGSMGI--GPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAR--EGLDNLVFVINCNLQRL 275 (896)
T ss_pred cCCCCchH--HHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHH--hCCCcEEEEEECCCccc
Confidence 34589999 999999998862 478999999999974 5666777777 89977788888876533
Q ss_pred ccCCCCCCCCCccccccccccCC-CCCHHHHHHHcCCceeee--------------------------C-----------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTH-NISIQNLCLAHGLNHVQV--------------------------K----------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~-~~df~~la~a~G~~~~~v--------------------------~----------- 425 (983)
--. .. .... --++...-+++|.+..+| +
T Consensus 276 DG~----------v~----~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g 341 (896)
T PRK13012 276 DGP----------VR----GNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDG 341 (896)
T ss_pred cCc----------cc----cccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcch
Confidence 210 00 0001 126888889999999888 4
Q ss_pred ----------------------------------CHHHHHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 426 ----------------------------------TKVELEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 426 ----------------------------------~~~eL~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
+.+++.+|++++.+ .++|+||-+.|-+
T Consensus 342 ~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~PtvIla~Tvk 403 (896)
T PRK13012 342 AYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQPTVILAKTKK 403 (896)
T ss_pred HHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCCEEEEEEeee
Confidence 78899999988774 4689999999876
No 227
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=97.15 E-value=0.0029 Score=76.70 Aligned_cols=117 Identities=17% Similarity=0.099 Sum_probs=86.4
Q ss_pred ecCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCcc
Q 041113 318 GNRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAI 383 (983)
Q Consensus 318 ~~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~ 383 (983)
..-|+||. |++.|+|.|++. +++|+||+|||-++= +...+..|.+ ++|+=+|+|+|+|...+
T Consensus 186 ~sTGSLG~--Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~--~kLdNLi~IVD~N~~ql 261 (885)
T TIGR00759 186 FPTVSMGL--GPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAR--EKLDNLTFVINCNLQRL 261 (885)
T ss_pred eCCCCccH--HHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEeCCCCcc
Confidence 45589999 999999998852 478999999999974 4566777777 89977788888877543
Q ss_pred ccCCCCCCCCCccccccccccCC-CCCHHHHHHHcCCceeeeC-------------------------------------
Q 041113 384 FSLLPIADRTEPRILDQYFYTTH-NISIQNLCLAHGLNHVQVK------------------------------------- 425 (983)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~-~~df~~la~a~G~~~~~v~------------------------------------- 425 (983)
--.- . +... .-++...-+++|.+..+|.
T Consensus 262 DG~v----------~----~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~G 327 (885)
T TIGR00759 262 DGPV----------R----GNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDG 327 (885)
T ss_pred CCcc----------c----cccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcch
Confidence 2110 0 0000 1257788888888888872
Q ss_pred ----------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 ----------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 ----------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.++|.+|++++.+. ++|+||-+.|-+
T Consensus 328 a~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grPTvIlA~TvK 389 (885)
T TIGR00759 328 AYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQPTVILAKTIK 389 (885)
T ss_pred HHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCCEEEEEeeee
Confidence 788889999887754 589999999876
No 228
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.11 E-value=0.00055 Score=83.09 Aligned_cols=43 Identities=23% Similarity=0.465 Sum_probs=39.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhh-CCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
.|+|||+||++++...|..+.+.|. ..|+||++|+||||+|..
T Consensus 449 ~P~VVllHG~~g~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~ 492 (792)
T TIGR03502 449 WPVVIYQHGITGAKENALAFAGTLAAAGVATIAIDHPLHGARSF 492 (792)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEeCCCCCCcccc
Confidence 3689999999999999999999997 469999999999999943
No 229
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.10 E-value=0.0011 Score=72.90 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=38.1
Q ss_pred ceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 939 NILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 939 ~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
..||++||++.++.-|..++..|.. .|.|+++|+||||+|.
T Consensus 35 g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~ 76 (298)
T COG2267 35 GVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRGHGRSP 76 (298)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 5899999999999999999998865 5999999999999996
No 230
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=97.04 E-value=0.0019 Score=70.52 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=35.1
Q ss_pred CceEEEeCCCCC----ChhhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLG----TGEEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~----~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++++|++||++. +...|..+.+.|++ .|+|+++|+||||.|..
T Consensus 26 ~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~ 73 (274)
T TIGR03100 26 TTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEG 73 (274)
T ss_pred CCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCC
Confidence 578999998763 44567778888876 59999999999999864
No 231
>PLN02511 hydrolase
Probab=96.95 E-value=0.0011 Score=76.24 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=34.5
Q ss_pred CceEEEeCCCCCChhh-H-HHHHH-HhhCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMK-AVSGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~-~l~~~~~vi~~Dl~G~G~S~~ 980 (983)
+|+|||+||+++++.. | ..++. .+.++|+|+++|+||||.|..
T Consensus 100 ~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~ 145 (388)
T PLN02511 100 APVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPV 145 (388)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCC
Confidence 6899999999877643 5 44554 456779999999999999974
No 232
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.94 E-value=0.0033 Score=79.16 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=79.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccc
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRIL 398 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~ 398 (983)
-.||- ....++|.+-.. +++||+.+|||.|+|+ +..|-.++. .+.+++++|+.|..=.|--..+
T Consensus 495 ~~MGg--eg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~--~~~nit~kIL~N~avAMTGgQp---------- 560 (1186)
T PRK13029 495 SQMGG--EGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIA--AGVNITYKILYNDAVAMTGGQP---------- 560 (1186)
T ss_pred eccCc--chhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHh--cCCCEEEEEEeCcchhccCCCC----------
Confidence 45776 778889988777 7899999999999996 778888887 7899999999999877752211
Q ss_pred ccccccCCCCCHHH---HHHHcCCceeeeCC--HHHH-----------------HHHHHhhh-ccCCCEEEEE
Q 041113 399 DQYFYTTHNISIQN---LCLAHGLNHVQVKT--KVEL-----------------EEALSMSQ-HLGTDRVIEV 448 (983)
Q Consensus 399 ~~~~~~~~~~df~~---la~a~G~~~~~v~~--~~eL-----------------~~aL~~a~-~~~~p~lIeV 448 (983)
.+..++..+ ++++.|++.+.|-+ +.++ .+++++.+ +.+|++||=.
T Consensus 561 -----~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 561 -----VDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred -----CCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 012466777 66999998877644 4222 34455555 5678776643
No 233
>PRK10566 esterase; Provisional
Probab=96.89 E-value=0.0023 Score=68.60 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
.|.|||+||++++...|..+...|.+ .|+|+++|+||||.|.
T Consensus 27 ~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~ 69 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDAPMHGARF 69 (249)
T ss_pred CCEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecCCcccccC
Confidence 68999999999999999999999976 4999999999999763
No 234
>COG1647 Esterase/lipase [General function prediction only]
Probab=96.87 E-value=0.00098 Score=67.10 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=38.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~ 979 (983)
+..|+|||||.++.+..+.+.+.|.++ |+|++|-+||||-..
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~ 57 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLP 57 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCH
Confidence 458999999999999999999999765 999999999999764
No 235
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=96.83 E-value=0.0063 Score=74.81 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=86.5
Q ss_pred cCCCCCccchHHHHHhhhhcc------------CceEEEEEccchhhh--ccchHHHHHhhccCCCEEEEEEeCCCCccc
Q 041113 319 NRGASGIDGLLSTAIGFAVGC------------NKHVLCVVGDISFLH--DTNGLAILKQRMKRKPILMLVINNHGGAIF 384 (983)
Q Consensus 319 ~~G~mG~~g~lpaaiGaalA~------------~~~vv~i~GDGsf~~--~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~ 384 (983)
.-|+||. |++.|+|.+++. +++|+|++|||.++= +...+..+.+ ++|.=+|+|+|.|...+-
T Consensus 193 ~tgS~G~--G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~--~~LdNLi~ivD~N~q~lD 268 (891)
T PRK09405 193 PTVSMGL--GPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAR--EKLDNLIFVINCNLQRLD 268 (891)
T ss_pred Cccccch--hHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHH--hCCCCEEEEEECCCcccC
Confidence 3489999 999999988853 478999999999975 5666777777 899777888887764332
Q ss_pred cCCCCCCCCCccccccccccCCCCCHHHHHHHcCCceeee--------------------------C-------------
Q 041113 385 SLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQV--------------------------K------------- 425 (983)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v--------------------------~------------- 425 (983)
.. .... . ...-++.+.-++||.+..+| +
T Consensus 269 G~----------v~~~--~-~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~ 335 (891)
T PRK09405 269 GP----------VRGN--G-KIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAY 335 (891)
T ss_pred Cc----------cccc--c-ccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHH
Confidence 10 0000 0 00136888888999988888 2
Q ss_pred --------------------------------CHHHHHHHHHhhhcc-CCCEEEEEEcCc
Q 041113 426 --------------------------------TKVELEEALSMSQHL-GTDRVIEVESCI 452 (983)
Q Consensus 426 --------------------------------~~~eL~~aL~~a~~~-~~p~lIeV~~~~ 452 (983)
+.++|.+|++++.+. ++|+||-+.|-+
T Consensus 336 ~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~PtvIia~Tvk 395 (891)
T PRK09405 336 VREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQPTVILAKTIK 395 (891)
T ss_pred HHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCCEEEEEecee
Confidence 788999999888764 789999999765
No 236
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.67 E-value=0.0094 Score=76.90 Aligned_cols=111 Identities=16% Similarity=0.060 Sum_probs=80.8
Q ss_pred ceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCC-CCCCCc-cccccccccCCCCCHHHHHHHc
Q 041113 341 KHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPI-ADRTEP-RILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 341 ~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~-~~~~~~-~~~~~~~~~~~~~df~~la~a~ 417 (983)
+.|+++.||| ++-..++.|.-+.+ -|.++++||+||..|+.-....- ...... ..+...-.....-|...+|.++
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~--r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLA--SGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHH--cCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 5799999999 56788899999988 69999999999999987632100 000000 0000000112457899999999
Q ss_pred CCcee-eeC---CHHHHHHHHHhhhccCCCEEEEEEcCcc
Q 041113 418 GLNHV-QVK---TKVELEEALSMSQHLGTDRVIEVESCID 453 (983)
Q Consensus 418 G~~~~-~v~---~~~eL~~aL~~a~~~~~p~lIeV~~~~~ 453 (983)
|..|+ ++. ++.++.+++++|.+.+||.+|++....-
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAYDGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcCCCCEEEEEECCCc
Confidence 98765 443 6899999999999999999999998764
No 237
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=96.58 E-value=0.013 Score=55.30 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=61.7
Q ss_pred CCCccccccccCcceeeeEEEEEEEECCCCEEEEeecCcCcCc----ccHH---HHHHHH-HHHHhHhccCccccccccc
Q 041113 509 APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHK----ENLL---DAEEQL-RFLLHFMTGAKISYFLPLL 580 (983)
Q Consensus 509 ~p~~~~~~~~~~~~~~~~~~lv~v~t~~G~~G~GE~~~~~~~~----~~~~---~~~~~l-~~~~~~l~g~~~~~~~~~~ 580 (983)
.|.+.++.+. +..-+.+.|.+..+||.+.||.|....|++ +.+. +....+ ..+.|.|+|+++..+..+-
T Consensus 37 ~P~TpGF~sV---Rq~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a 113 (159)
T PF05034_consen 37 EPVTPGFKSV---RQAGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENA 113 (159)
T ss_dssp ---STT-SSS---EEEEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHH
T ss_pred CCCCCCchhh---hccCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHH
Confidence 3555555543 234778999999999999999997654321 1111 111222 4688999999988765433
Q ss_pred ccCchhhhhhhcCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhhhc
Q 041113 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNIL 627 (983)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~pv~~lL 627 (983)
.. + ..+ +.+..++.+.+.+|..||+|+.||..+.-..+.+
T Consensus 114 ~~-----~-d~~-~~g~rlhtAiRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 114 EK-----F-DEL-VDGKRLHTAIRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HH-----H-HH--ETTEE--HHHHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HH-----H-Hhc-ccCCcchhHHHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 21 1 111 2334567889999999999999999887666554
No 238
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=96.56 E-value=0.0034 Score=71.87 Aligned_cols=45 Identities=27% Similarity=0.573 Sum_probs=35.6
Q ss_pred CCceEEEeCCCCCCh--hhHHH-HHHHhh---CCCEEEEEcCCCCCCCCCC
Q 041113 937 QDNILLFLHGFLGTG--EEWIP-IMKAVS---GSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~--~~w~~-~~~~l~---~~~~vi~~Dl~G~G~S~~~ 981 (983)
++|++|+||||+.+. ..|.+ +.+.|. .+|+||++|++|||.|..+
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~ 90 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYP 90 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCc
Confidence 378999999999764 56886 555553 3699999999999988654
No 239
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.47 E-value=0.0057 Score=64.86 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=37.2
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+-.|+|+||++... ..+..+...|+. .|-|+++|++|||+|+.
T Consensus 54 r~lv~~~HG~g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG 98 (313)
T KOG1455|consen 54 RGLVFLCHGYGEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG 98 (313)
T ss_pred ceEEEEEcCCcccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC
Confidence 45799999999876 678888888876 59999999999999985
No 240
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.42 E-value=0.0042 Score=66.92 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC--CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS--ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~ 981 (983)
.||++++||+.+|...|+.+...|+.. .+++++|+|-||.|.+-
T Consensus 52 ~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~ 97 (315)
T KOG2382|consen 52 APPAIILHGLLGSKENWRSVAKNLSRKLGRDVYAVDVRNHGSSPKI 97 (315)
T ss_pred CCceEEecccccCCCCHHHHHHHhcccccCceEEEecccCCCCccc
Confidence 799999999999999999999999875 79999999999999864
No 241
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.33 E-value=0.061 Score=59.42 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=96.1
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
|+...+ .+.+++++.+.++.+.+.||..|-|..|.+ .+++.-.+.++++|+++++++.+.|=-.-
T Consensus 64 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 64 LVRIQL-LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred cEEEEe-ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 444444 357899999989888889999999998874 12344467788889998766655555555
Q ss_pred CCC-HHHHHHHHhhcccCCCceee-------c----CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCC
Q 041113 711 NWT-YQEALEFGFLIKDCDLQYIE-------E----PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPG 777 (983)
Q Consensus 711 ~~~-~~~a~~~~~~l~~~~i~~iE-------e----P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~ 777 (983)
+|+ .+++.++++.+++.|+.+|- | |-.+++..+++++..++||.+.=.+.+..| ...++ ..+
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~d-----a~~~l~~~g 217 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQS-----AQQCMAITG 217 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHH-----HHHHHhccC
Confidence 674 35688999999988766542 2 111477788999999999999888888754 34433 467
Q ss_pred ceEEEEcCC
Q 041113 778 IVAIVIKPS 786 (983)
Q Consensus 778 ~~~i~~k~~ 786 (983)
+|.+.+=-+
T Consensus 218 ~DgVmiGRg 226 (312)
T PRK10550 218 CDAVMIGRG 226 (312)
T ss_pred CCEEEEcHH
Confidence 888776433
No 242
>PRK10985 putative hydrolase; Provisional
Probab=96.13 E-value=0.0062 Score=68.22 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=34.5
Q ss_pred CceEEEeCCCCCChhh--HHHHHHHhhC-CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE--WIPIMKAVSG-SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~--w~~~~~~l~~-~~~vi~~Dl~G~G~S~ 979 (983)
+|+||++||+++++.. +..++..|.+ +|+|+++|+||||.|.
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~ 102 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEP 102 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCc
Confidence 6899999999987543 4567777765 5999999999999775
No 243
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.06 E-value=0.0072 Score=63.84 Aligned_cols=42 Identities=40% Similarity=0.763 Sum_probs=34.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC---CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG---SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~---~~~vi~~Dl~G~G~S~ 979 (983)
+|+++|+||++++...|......+.. .|+|+++|+||||.|.
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~ 65 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSD 65 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCC
Confidence 35899999999999999985443433 2999999999999996
No 244
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.03 E-value=0.036 Score=55.73 Aligned_cols=106 Identities=18% Similarity=0.097 Sum_probs=80.4
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+.+++.+|++-=| ++.-.+..|..+.. .++|+++|.-.-..+..-+. .+ ..
T Consensus 51 A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~A~~--~~~Pvl~i~g~~~~~~~~~~----------~~------q~ 112 (172)
T PF02776_consen 51 AAFMADGYARATGRPGVVIVTSGPGATNALTGLANAYA--DRIPVLVITGQRPSAGEGRG----------AF------QQ 112 (172)
T ss_dssp HHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHHHHH--TT-EEEEEEEESSGGGTTTT----------ST------TS
T ss_pred hHHHHHHHHHhhccceEEEeecccchHHHHHHHhhccc--ceeeEEEEecccchhhhccc----------cc------cc
Confidence 67788888877778887776554 56777889988877 89999888887776544311 01 12
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh-----ccCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ-----HLGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~-----~~~~p~lIeV~~~ 451 (983)
..|...+.+.+.....++++++++..++++|+ ..++|+.|++..|
T Consensus 113 ~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 113 EIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp STHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred chhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 45888999999999999999999888888775 3589999999876
No 245
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=95.97 E-value=0.02 Score=66.19 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=34.3
Q ss_pred CceEEEeCCCCCCh-hhHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
.|.||+.||+.+.. ..|..+.+.|.+. |.|+++|+||||.|..
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~ 238 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK 238 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC
Confidence 56667666766654 5798888888765 9999999999999865
No 246
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.89 E-value=0.047 Score=53.86 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=77.0
Q ss_pred hHHHHHhhhhccCceEEE-EEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLC-VVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~-i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|.|++.+.+++.++ .+..-++.-.++.|..+.. .++|+++|.-+-.....-+. ..+
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~--~~~Pll~i~~~~~~~~~~~~-----------------~~q 106 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYL--DSIPLLVITGQRPTAGEGRG-----------------AFQ 106 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHh--hCCCEEEEeCCCccccccCC-----------------ccc
Confidence 778888988887555555 5548888888999999988 79999888877665533211 012
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----c-CCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----L-GTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~-~~p~lIeV~ 449 (983)
..|...+.+.+-....++++.+++.+.+.+++. . ++|+.|++.
T Consensus 107 ~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 107 EIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 357777777777778999999999888888763 2 589999874
No 247
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=95.86 E-value=0.014 Score=65.65 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=35.1
Q ss_pred CceEEEeCCCCCChh-hH-------------------------HHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE-EW-------------------------IPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~-~w-------------------------~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
+-.||++||++.++. .+ ..+++.|.+ +|+|+++|+||||+|+.
T Consensus 21 kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V~~~D~rGHG~S~~ 90 (332)
T TIGR01607 21 IGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSVYGLDLQGHGESDG 90 (332)
T ss_pred eEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcEEEecccccCCCcc
Confidence 458999999999885 21 356888855 69999999999999974
No 248
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=95.85 E-value=0.021 Score=60.19 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=40.4
Q ss_pred ceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCCCCCC
Q 041113 939 NILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 939 ~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~~~ 982 (983)
.+||=+||-++|+..|+.+.+.|.+. .|+|.+.+||||.|+.+.
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~~iR~I~iN~PGf~~t~~~~ 80 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEAGIRFIGINYPGFGFTPGYP 80 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHcCeEEEEeCCCCCCCCCCCc
Confidence 38999999999999999999999764 999999999999998765
No 249
>PRK13604 luxD acyl transferase; Provisional
Probab=95.70 E-value=0.04 Score=60.04 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC-CCEEEEEcCCCC-CCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG-SARCISIDLPGH-GGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~-~~~vi~~Dl~G~-G~S~~ 980 (983)
.++||+.|||+.+...+..+.+.|.+ .|.|+.+|.+|| |.|+.
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G 81 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSG 81 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 57899999999998778999999976 599999999998 89864
No 250
>PLN00021 chlorophyllase
Probab=95.64 E-value=0.042 Score=60.86 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=37.2
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G~S 978 (983)
.|+|||+||++.+...|..+.++|++. |.|+++|++|++.+
T Consensus 52 ~PvVv~lHG~~~~~~~y~~l~~~Las~G~~VvapD~~g~~~~ 93 (313)
T PLN00021 52 YPVLLFLHGYLLYNSFYSQLLQHIASHGFIVVAPQLYTLAGP 93 (313)
T ss_pred CCEEEEECCCCCCcccHHHHHHHHHhCCCEEEEecCCCcCCC
Confidence 689999999999999999999999875 99999999998643
No 251
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.64 E-value=0.14 Score=57.53 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCc--EEEEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRI--ELRVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~--~l~vDa--- 708 (983)
+++++.++.+.+.||..+-|+.+.+ .+++.. ++.|++||+++|+++ .+++-+
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~ 220 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED 220 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc
Confidence 4566667777789999999998421 122222 578999999999885 455554
Q ss_pred -CCCCCHHHHHHHHhhcccCC-Cceeec-------C---------CC-----ChHHHHHHHhhcCCcEEeCCCccCc
Q 041113 709 -NRNWTYQEALEFGFLIKDCD-LQYIEE-------P---------VQ-----NEEDIIKYCEESGLPVALDETIDKF 762 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~-i~~iEe-------P---------~~-----~~~~~~~l~~~~~ipIa~dEs~~~~ 762 (983)
.++++.++++++++.|++.+ +.|++= + .. +++..+++++..++||...=.+.+.
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDP 297 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCH
Confidence 34588999999999999987 788762 1 00 1233355666667777666555554
No 252
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=95.54 E-value=0.019 Score=56.83 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=47.7
Q ss_pred eEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCCh-hhHHHHHHHhhCC--CEEEEEcCCCCCCCCCCC
Q 041113 910 LRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTG-EEWIPIMKAVSGS--ARCISIDLPGHGGSKMQN 982 (983)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~-~~w~~~~~~l~~~--~~vi~~Dl~G~G~S~~~~ 982 (983)
++.++.+++..++| ...|.+ ...|+++.|.-+|. ..|.+++..|.+. +++|++|-||||.|..|.
T Consensus 22 te~kv~vng~ql~y----~~~G~G----~~~iLlipGalGs~~tDf~pql~~l~k~l~~TivawDPpGYG~SrPP~ 89 (277)
T KOG2984|consen 22 TESKVHVNGTQLGY----CKYGHG----PNYILLIPGALGSYKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPE 89 (277)
T ss_pred hhheeeecCceeee----eecCCC----CceeEecccccccccccCCHHHHhcCCCCceEEEEECCCCCCCCCCCc
Confidence 34555666665555 555553 24789999987766 5799988777543 999999999999999875
No 253
>PLN02872 triacylglycerol lipase
Probab=95.53 E-value=0.017 Score=66.01 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred CceEEEeCCCCCChhhHH------HHHHHhhC-CCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI------PIMKAVSG-SARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~------~~~~~l~~-~~~vi~~Dl~G~G~S 978 (983)
+|+|||+||++.++..|. .+...|++ .|+|+++|+||+|.|
T Consensus 74 ~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s 121 (395)
T PLN02872 74 GPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWS 121 (395)
T ss_pred CCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccc
Confidence 689999999999999994 34445765 599999999998765
No 254
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.16 E-value=0.16 Score=55.93 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=67.9
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
.|+..++ ...+++++.+.++.+.+.|+..|-+-++.+. +++.-.+.++++|+.+ ++.+.+-.+..++.
T Consensus 99 ~pvi~si-~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~ 175 (289)
T cd02810 99 QPLIASV-GGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDL 175 (289)
T ss_pred CeEEEEe-ccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCH
Confidence 3444555 2347888888888888889999999887531 2233356788999887 67788888888999
Q ss_pred HHHHHHHhhcccCCCceeecC
Q 041113 715 QEALEFGFLIKDCDLQYIEEP 735 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iEeP 735 (983)
++..++++.+++.++.+|.=+
T Consensus 176 ~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 176 EDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999888888743
No 255
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.11 E-value=0.25 Score=55.02 Aligned_cols=131 Identities=21% Similarity=0.315 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH--H
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTY--Q 715 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~--~ 715 (983)
.+.+++++.+.++...+.||..|-+-+|.|. +++.-.+.++++|++++ +.+.+=-+.+|+. .
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d--~pv~vKiR~G~~~~~~ 149 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVD--VPVTLKIRTGWAPEHR 149 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcC--CceEEEEEccccCCcc
Confidence 3568999988888777889999999998741 24445677888888873 3333333355643 3
Q ss_pred HHHHHHhhcccCCCcee-------ecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEc
Q 041113 716 EALEFGFLIKDCDLQYI-------EEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIK 784 (983)
Q Consensus 716 ~a~~~~~~l~~~~i~~i-------EeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k 784 (983)
+++++++.+++.|+.+| ++-.. +++.++++++.+++||.+.=.+.+..+ +..+.+ .|+|.+.+=
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~d-----a~~~l~~~gadgVmiG 224 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLK-----ARAVLDYTGADALMIG 224 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHH-----HHHHHhccCCCEEEEC
Confidence 68889999999888887 33322 577778899999999998888887653 444444 678888864
Q ss_pred CCCcC
Q 041113 785 PSVIG 789 (983)
Q Consensus 785 ~~~~G 789 (983)
-+-++
T Consensus 225 R~~l~ 229 (321)
T PRK10415 225 RAAQG 229 (321)
T ss_pred hHhhc
Confidence 43333
No 256
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=95.08 E-value=0.069 Score=52.53 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=50.1
Q ss_pred hHHHHHHHHhcCCceEEEEccCCChhH-HHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCc
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHNEDE-IWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSE 153 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~~~~-~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~ 153 (983)
.++.++.+|.+||||++++|..+..+. .++........++|++.|.+.. ++. ++..|.+ ..-.......+.
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~------~~~-~d~~~ky-~~~~~~~~l~~p 94 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNI------IGM-PDYRPKY-PKIEPENELNDP 94 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCH------CCH-CSSGCCE--HHHHHHHCCST
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeeccccc------ccc-ccccccc-ccccHHHhcCCC
Confidence 347788999999999999999876433 4466677888999999998422 232 3333332 111122222222
Q ss_pred ccccc---CCCCEEEEeCCcc
Q 041113 154 SVKDW---IQFDVIIQIGSRI 171 (983)
Q Consensus 154 ~~~~~---~~aDlvl~iG~~~ 171 (983)
.-... .+.|++|.+|...
T Consensus 95 ~w~g~~g~g~~Dl~iFiGv~~ 115 (167)
T PF02552_consen 95 HWNGTDGHGNYDLVIFIGVHC 115 (167)
T ss_dssp T--TTTSS---SEEEEES--H
T ss_pred CCCccccCCcccEEEEecchH
Confidence 11111 3789999999875
No 257
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.93 E-value=0.3 Score=55.76 Aligned_cols=121 Identities=12% Similarity=0.198 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccC-C-------------------CChHH----HHHHHHHHHHHcCCCcEE--EEEc--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVAR-R-------------------ADPIK----DAEVIQEVRKKVGHRIEL--RVDA-- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~-~-------------------~~~~~----d~~~v~~vr~~~g~~~~l--~vDa-- 708 (983)
+++.+.++.+++.||..+-|+.+. . .+++. =++.|++||+++|+++.+ ++.+
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~ 229 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 455666667778999999999732 1 12222 257899999999988543 3332
Q ss_pred ----------------CCCCCHHHHHHHHhhcccCCCceeecCCC------------------ChHHHHHHHhhcCCcEE
Q 041113 709 ----------------NRNWTYQEALEFGFLIKDCDLQYIEEPVQ------------------NEEDIIKYCEESGLPVA 754 (983)
Q Consensus 709 ----------------N~~~~~~~a~~~~~~l~~~~i~~iEeP~~------------------~~~~~~~l~~~~~ipIa 754 (983)
.++++.++++++++.|++.++.||+=-.. ..+..+.+++..++||.
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 34789999999999999888888743110 01223556677778877
Q ss_pred eCCCccCcCCChHHHHHhhcCC-CceEEE
Q 041113 755 LDETIDKFQKDPLNMLEKYAHP-GIVAIV 782 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~-~~~~i~ 782 (983)
+-=.+.+.. ....+++. .+|.|.
T Consensus 310 ~~G~i~~~~-----~~~~~l~~g~~D~V~ 333 (382)
T cd02931 310 MAGRMEDPE-----LASEAINEGIADMIS 333 (382)
T ss_pred EeCCCCCHH-----HHHHHHHcCCCCeee
Confidence 766665543 24444443 366654
No 258
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.68 E-value=0.21 Score=56.55 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcC----CCcEEEEEc-
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVG----HRIELRVDA- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g----~~~~l~vDa- 708 (983)
+++++.++.+++.||..+-|+.+.+ .+++.. .+.+++||+++| +++.+.+--
T Consensus 144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 4566677777889999999997531 122222 578899999998 676554432
Q ss_pred -----CCCCCHHHHHHHHhhcccCCCceeec
Q 041113 709 -----NRNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 709 -----N~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
.++++.++.+++++.|++.++.||+=
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~V 254 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHI 254 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 34678999999999999999999873
No 259
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=94.63 E-value=0.23 Score=49.38 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=76.5
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ ..-++...+..+.++.. .++|+++|.-+-.....-+ +..+
T Consensus 50 A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~~--~~~Pvl~I~g~~~~~~~~~-----------------~~~q 110 (164)
T cd07039 50 AAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKR--DRAPVLAIAGQVPTDELGT-----------------DYFQ 110 (164)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEecCCcccccCC-----------------CCCc
Confidence 45567777777766766544 45556667799999987 8999988886554321110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++.+++++|+. .+||+.||+..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 111 EVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred ccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 468889999999899999999998888887753 4699999998763
No 260
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.62 E-value=0.42 Score=53.87 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCcEEEEEcC----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRIELRVDAN---- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~~l~vDaN---- 709 (983)
+++.+.++.+++.||..|-|+.+.. .+++. =++.|++||+++|+++.+.+=-|
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 4556667777789999999998651 12222 25789999999999865544222
Q ss_pred ------CCCCHHHHHHHHhhcccCCCceeec
Q 041113 710 ------RNWTYQEALEFGFLIKDCDLQYIEE 734 (983)
Q Consensus 710 ------~~~~~~~a~~~~~~l~~~~i~~iEe 734 (983)
++.++++++++++.|++.++.+|+=
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~v 254 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLVDAGVDIFHC 254 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 2478999999999999888887753
No 261
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=94.59 E-value=0.044 Score=59.68 Aligned_cols=41 Identities=27% Similarity=0.523 Sum_probs=32.6
Q ss_pred CceEEEeCCCCCCh-hhHHHHH-H-Hhh-CCCEEEEEcCCCCCCC
Q 041113 938 DNILLFLHGFLGTG-EEWIPIM-K-AVS-GSARCISIDLPGHGGS 978 (983)
Q Consensus 938 ~~~lv~lHG~~~~~-~~w~~~~-~-~l~-~~~~vi~~Dl~G~G~S 978 (983)
+|++|++|||+++. ..|...+ . .|. .+|+||++|++|++.+
T Consensus 36 ~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~ 80 (275)
T cd00707 36 RPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGANP 80 (275)
T ss_pred CCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 68999999999998 6887654 3 344 4699999999998543
No 262
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.43 E-value=0.18 Score=55.79 Aligned_cols=124 Identities=27% Similarity=0.407 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC--HHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWT--YQE 716 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~--~~~ 716 (983)
+.+++.+.+.++...+.||..|-+-+|.| .+++.=.+.|+++++.++ +.+.+----+|+ .++
T Consensus 62 g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~--~pvsvKiR~g~~~~~~~ 139 (309)
T PF01207_consen 62 GNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP--IPVSVKIRLGWDDSPEE 139 (309)
T ss_dssp -S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S--SEEEEEEESECT--CHH
T ss_pred eccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc--cceEEecccccccchhH
Confidence 46788888888877777999999999864 245666788999999884 777777777776 788
Q ss_pred HHHHHhhcccCCCcee-------ecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEE
Q 041113 717 ALEFGFLIKDCDLQYI-------EEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVI 783 (983)
Q Consensus 717 a~~~~~~l~~~~i~~i-------EeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~ 783 (983)
.+++++.+++.|+.+| +|-.. +|+.++++++..++||.+.=.+.+..| ...+.+. |+|.+.+
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d-----~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPED-----AERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHH-----HHHHCCCH-SSEEEE
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHH-----HHHHHHhcCCcEEEE
Confidence 9999999999998877 33322 599999999999999999999998754 4455544 7888775
No 263
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.54 Score=52.19 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHH-
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE- 716 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~- 716 (983)
.+.+|+.+++.++...+.||..|-+-+|.| .+++.=.+.|++++++++ ++.+.|=---+|+..+
T Consensus 74 ~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~ 152 (323)
T COG0042 74 GGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDI 152 (323)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcccc
Confidence 356788888888888889999999999875 245556788999999996 7888888888886665
Q ss_pred -HHHHHhhcccCCCce-----------eecCCCChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 717 -ALEFGFLIKDCDLQY-----------IEEPVQNEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 717 -a~~~~~~l~~~~i~~-----------iEeP~~~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
+.++++.+++.++.. ...|. +++.++++++..+ +||.+.-.+.+..+ ...-+...|+|.+.+
T Consensus 153 ~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~a-d~~~I~~vk~~~~~ipvi~NGdI~s~~~----a~~~l~~tg~DgVMi 227 (323)
T COG0042 153 LALEIARILEDAGADALTVHGRTRAQGYLGPA-DWDYIKELKEAVPSIPVIANGDIKSLED----AKEMLEYTGADGVMI 227 (323)
T ss_pred cHHHHHHHHHhcCCCEEEEecccHHhcCCCcc-CHHHHHHHHHhCCCCeEEeCCCcCCHHH----HHHHHHhhCCCEEEE
Confidence 777888888776543 34453 4899999999998 99999999998764 233334457888876
Q ss_pred cCCCcCCHH
Q 041113 784 KPSVIGGFE 792 (983)
Q Consensus 784 k~~~~GGl~ 792 (983)
-=.-.|-..
T Consensus 228 gRga~~nP~ 236 (323)
T COG0042 228 GRGALGNPW 236 (323)
T ss_pred cHHHccCCc
Confidence 544444333
No 264
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.26 E-value=0.7 Score=51.06 Aligned_cols=131 Identities=17% Similarity=0.261 Sum_probs=85.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcC-CCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEG-FTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~ 713 (983)
|+..++ ...+++++.+.++.+.+.| |..|-+-++.+ .+++.-.+.+++||+++ ++.+.+--+. +
T Consensus 93 p~i~si-~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~--~ 167 (301)
T PRK07259 93 PIIANV-AGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTP--N 167 (301)
T ss_pred cEEEEe-ccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCC--C
Confidence 444555 2457899999999988898 99999865332 13444567889999887 5667766553 4
Q ss_pred HHHHHHHHhhcccCCCceee---------------cCC-------------C--ChHHHHHHHhhcCCcEEeCCCccCcC
Q 041113 714 YQEALEFGFLIKDCDLQYIE---------------EPV-------------Q--NEEDIIKYCEESGLPVALDETIDKFQ 763 (983)
Q Consensus 714 ~~~a~~~~~~l~~~~i~~iE---------------eP~-------------~--~~~~~~~l~~~~~ipIa~dEs~~~~~ 763 (983)
.++..++++.+++.++..|. +|. . ..+-.+++++.+++||.+.=.+.+..
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~ 247 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAE 247 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 45777888888877765442 110 0 13445667777788888777777654
Q ss_pred CChHHHHHhhcCCCceEEEEcC
Q 041113 764 KDPLNMLEKYAHPGIVAIVIKP 785 (983)
Q Consensus 764 ~~~~~~~~~~~~~~~~~i~~k~ 785 (983)
| ..+++..|+|.+++=-
T Consensus 248 d-----a~~~l~aGAd~V~igr 264 (301)
T PRK07259 248 D-----AIEFIMAGASAVQVGT 264 (301)
T ss_pred H-----HHHHHHcCCCceeEcH
Confidence 3 4444456777776543
No 265
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=94.22 E-value=0.38 Score=54.42 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCc-EEEEE-----
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRI-ELRVD----- 707 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~-~l~vD----- 707 (983)
++..+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|++. -+++-
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 4566677778889999999997642 11211 2578999999999873 33342
Q ss_pred --cCCCCCHHH-HHHHHhhcccCCCceeecCCCC--------hHHHHHHHhhcCCcEEeCCC
Q 041113 708 --ANRNWTYQE-ALEFGFLIKDCDLQYIEEPVQN--------EEDIIKYCEESGLPVALDET 758 (983)
Q Consensus 708 --aN~~~~~~~-a~~~~~~l~~~~i~~iEeP~~~--------~~~~~~l~~~~~ipIa~dEs 758 (983)
..++++.++ ++++++.|++.++.+|+=-.++ .+-.+++++.+++||...-.
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA 300 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 234688888 8999999999888888633221 11124555566666665433
No 266
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.94 E-value=0.98 Score=50.58 Aligned_cols=145 Identities=12% Similarity=0.209 Sum_probs=92.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCCc--EEEEEc
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHRI--ELRVDA 708 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~~--~l~vDa 708 (983)
|+...+ .+.+++++.+.++...+.||..|-+..|.+ .+++.-.+.++++|++++-.+ ++++-.
T Consensus 66 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~ 144 (333)
T PRK11815 66 PVALQL-GGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGI 144 (333)
T ss_pred cEEEEE-eCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeee
Confidence 344444 357899999999888889999999988764 123334578888898864333 334432
Q ss_pred CCCCCHHHHHHHHhhcccCCCceee--------c----------CCCChHHHHHHHhhc-CCcEEeCCCccCcCCChHHH
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIE--------E----------PVQNEEDIIKYCEES-GLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iE--------e----------P~~~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~ 769 (983)
...-+.+++.++++.+++.|+.+|. | |-.+++.++++++.. ++||.+.=.+.+..|
T Consensus 145 ~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ed----- 219 (333)
T PRK11815 145 DDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE----- 219 (333)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHH-----
Confidence 2223567788999999888877764 1 101366677888774 799888777777654
Q ss_pred HHhhcCCCceEEEEcCCCcCCHHHHHH
Q 041113 770 LEKYAHPGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 770 ~~~~~~~~~~~i~~k~~~~GGl~~~~~ 796 (983)
+..+.+ ++|.+.+=-...+...-..+
T Consensus 220 a~~~l~-~aDgVmIGRa~l~nP~~~~~ 245 (333)
T PRK11815 220 AKEHLQ-HVDGVMIGRAAYHNPYLLAE 245 (333)
T ss_pred HHHHHh-cCCEEEEcHHHHhCCHHHHH
Confidence 333443 47777764443344433333
No 267
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=93.87 E-value=0.32 Score=53.15 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=82.3
Q ss_pred cCCCcEEEEEc--CCC-CCHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcCCcEEeCCCccCcCCChHHHHH
Q 041113 698 VGHRIELRVDA--NRN-WTYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 698 ~g~~~~l~vDa--N~~-~~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
+|.+..+.|-. |.. -+.+..++-+++|++.|-+.+-=-+++ .+.+..+++++++|+.+|=+..- +...
T Consensus 22 iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~------~lAl 95 (360)
T PRK00366 22 IGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDY------RLAL 95 (360)
T ss_pred ECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCH------HHHH
Confidence 45555555542 221 144555556666777777777777774 34567888999999999987432 2344
Q ss_pred hhcCCCceEEEEcCCCcCC-HHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 772 KYAHPGIVAIVIKPSVIGG-FENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 772 ~~~~~~~~~i~~k~~~~GG-l~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
..++.|+|.+.+.|+.+|. -....++++.|+++|+++-++-+++|
T Consensus 96 ~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GS 141 (360)
T PRK00366 96 AAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGS 141 (360)
T ss_pred HHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 5566789999999999999 78999999999999999988877654
No 268
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.73 E-value=0.31 Score=52.77 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=75.6
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCCh---HHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQNE---EDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG 789 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~~---~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G 789 (983)
+.+..++-+++|++.|-+.+-=-+++. +.+.++++.+++||.+|=+..- ......++.|+|-+.+.|+.+|
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~------~lAl~a~~~g~dkiRINPGNig 105 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDY------RLAALAMAKGVAKVRINPGNIG 105 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCc------HHHHHHHHhccCeEEECCCCCC
Confidence 445555666667777777777677743 4567788899999999987532 1233445678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 790 GFENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
+-....++++.|+++|+++-++-+++|
T Consensus 106 ~~e~v~~vv~~ak~~~ipIRIGVN~GS 132 (346)
T TIGR00612 106 FRERVRDVVEKARDHGKAMRIGVNHGS 132 (346)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 999999999999999999988877654
No 269
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.70 E-value=1.2 Score=49.17 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=89.7
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
|+..++. ..+++++.+.++.+.+.||..|-+.++.+ .+++.-.+.++++|+.+ ++.+.+--+ .+.
T Consensus 91 p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~--~~~ 165 (296)
T cd04740 91 PVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLT--PNV 165 (296)
T ss_pred cEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeC--CCc
Confidence 4444542 45688899999988889999999987642 13444567899999887 455555433 333
Q ss_pred HHHHHHHhhcccCCCceee---------------cCC-------------C--ChHHHHHHHhhcCCcEEeCCCccCcCC
Q 041113 715 QEALEFGFLIKDCDLQYIE---------------EPV-------------Q--NEEDIIKYCEESGLPVALDETIDKFQK 764 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iE---------------eP~-------------~--~~~~~~~l~~~~~ipIa~dEs~~~~~~ 764 (983)
++..++++.+++.++..|- .|. . .++..+++++.+++||.+.=.+.+..|
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~d 245 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGED 245 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 4667777777766654331 111 0 124456777778899888777777543
Q ss_pred ChHHHHHhhcCCCceEEEEcCCCcCCHHHHHH
Q 041113 765 DPLNMLEKYAHPGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 765 ~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~ 796 (983)
+.+++..|+|.+++--..+.|..-..+
T Consensus 246 -----a~~~l~~GAd~V~igra~l~~p~~~~~ 272 (296)
T cd04740 246 -----ALEFLMAGASAVQVGTANFVDPEAFKE 272 (296)
T ss_pred -----HHHHHHcCCCEEEEchhhhcChHHHHH
Confidence 455556778888865544444443333
No 270
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.59 E-value=1.1 Score=49.96 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=87.9
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
|+...+ .+.+++++.+.++.+.+.||..|-+..|.+. +++.-.+.++++|+.++ +.+.+-...
T Consensus 64 p~i~ql-~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~ 140 (319)
T TIGR00737 64 PISVQL-FGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRI 140 (319)
T ss_pred eEEEEE-eCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEc
Confidence 444444 3568999999999888899999999987631 22333567888888875 444444444
Q ss_pred CCCH--HHHHHHHhhcccCCCceeec-------CC---CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCC
Q 041113 711 NWTY--QEALEFGFLIKDCDLQYIEE-------PV---QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPG 777 (983)
Q Consensus 711 ~~~~--~~a~~~~~~l~~~~i~~iEe-------P~---~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~ 777 (983)
+|+. .+..++++.+++.++.+|-= -. .+++..+++++..++||.+.=.+.+..+ +..+. ..+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~d-----a~~~l~~~g 215 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPED-----AKAMLETTG 215 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHH-----HHHHHHhhC
Confidence 4532 34677888888877766531 11 1466667888888899988877777653 44444 467
Q ss_pred ceEEEE
Q 041113 778 IVAIVI 783 (983)
Q Consensus 778 ~~~i~~ 783 (983)
+|.+.+
T Consensus 216 ad~Vmi 221 (319)
T TIGR00737 216 CDGVMI 221 (319)
T ss_pred CCEEEE
Confidence 888775
No 271
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=93.55 E-value=0.24 Score=54.01 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred CceEEEeCCCCCChhhHHHH--HHHhhC--CCEEEEEcC--CCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI--MKAVSG--SARCISIDL--PGHGG 977 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~--~~~l~~--~~~vi~~Dl--~G~G~ 977 (983)
.|+|+|+||++++...|... +..+.. .+.||+||. +|+|.
T Consensus 42 ~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~ 87 (275)
T TIGR02821 42 VPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGI 87 (275)
T ss_pred CCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCC
Confidence 68999999999999988643 445543 599999998 55553
No 272
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=93.30 E-value=0.088 Score=59.68 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=35.7
Q ss_pred CceEEEeCCCCCChhhH-----HHHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEW-----IPIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w-----~~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++|||++||+..+...| +.+++.|.+ +|+|+++|++|+|.|+.
T Consensus 62 ~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~s~~ 110 (350)
T TIGR01836 62 KTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDRADR 110 (350)
T ss_pred CCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCHHHh
Confidence 56899999987666665 688998876 49999999999998754
No 273
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=93.28 E-value=0.25 Score=53.37 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchh-hhhhhhhhccccccccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRK-LLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~-~kg~~~~~hp~~~~~g~~g~ 148 (983)
....++++++++.|.+||||++.-|....-.+.+.-.+|+|++|+ |+.+.. .++..| ..++....-|-
T Consensus 63 v~~deAie~Aa~ILv~aKrPllyg~s~tscEA~~~gielaE~~ga-viD~~a-svchGp~~~alqe~g~p~--------- 131 (429)
T COG1029 63 VDYDEAIEKAAEILVNAKRPLLYGWSSTSCEAQELGIELAEKLGA-VIDSNA-SVCHGPSVLALQEAGKPT--------- 131 (429)
T ss_pred ccHHHHHHHHHHHHHhccCceEeccccchHHHHHHHHHHHHHhCc-EecCCC-ccccchHHHHHHhcCCcc---------
Confidence 456789999999999999999988776555556677899999999 555553 232222 11222111111
Q ss_pred hccCcccccc-CCCCEEEEeCCcccc
Q 041113 149 ALLSESVKDW-IQFDVIIQIGSRITS 173 (983)
Q Consensus 149 ~~~~~~~~~~-~~aDlvl~iG~~~~~ 173 (983)
.-.-++ ..+|+|+..|+.+.+
T Consensus 132 ----~TlgevKNraDviVyWGtNP~~ 153 (429)
T COG1029 132 ----ATLGEVKNRADVIVYWGTNPMH 153 (429)
T ss_pred ----cchhhhcccccEEEEeCCCccc
Confidence 111123 479999999998654
No 274
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.17 E-value=0.87 Score=51.00 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHHH----HHHHHHHHHHcCCCcEEEEEc----C
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIKD----AEVIQEVRKKVGHRIELRVDA----N 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~d----~~~v~~vr~~~g~~~~l~vDa----N 709 (983)
+++.+.++.+++.||..+-|+.+.+ .+++.. .+.|++||++++..+.+++-+ +
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 3455666677789999999998731 122222 468899999984444444443 4
Q ss_pred CCCCHHHHHHHHhhcccCCCceeecCC--------C-----ChHHHHHHHhhcCCcEEeCCCccCc
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIEEPV--------Q-----NEEDIIKYCEESGLPVALDETIDKF 762 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iEeP~--------~-----~~~~~~~l~~~~~ipIa~dEs~~~~ 762 (983)
++++.++++++++.|++.++.||+==. . +++..+++++..++||..-=.+.+.
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~ 287 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSG 287 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCH
Confidence 578999999999999998888875311 1 1223355666666666554444443
No 275
>PRK13761 hypothetical protein; Provisional
Probab=93.13 E-value=1.7 Score=44.22 Aligned_cols=144 Identities=13% Similarity=0.082 Sum_probs=84.5
Q ss_pred cchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchh----hhhhhhhhccccccccc-
Q 041113 71 YTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRK----LLASFLETEQNILFLDH- 145 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~----~kg~~~~~hp~~~~~g~- 145 (983)
+..+++..++..|.-|++|||=+-+....-..+++.+||+.+|+++=...+. |..+ .+..+-+.-.-- .+|.
T Consensus 52 ~A~~A~raAaA~LLlA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLF~--RT~eR~~~I~~~l~~~Ga~~-vlG~~ 128 (248)
T PRK13761 52 SALEAERAAAALLLLAKHPVISVNGNTAALVPEEIVELAEALNAKLEVNLFY--RTEERVEKIAEVLREHGAKE-VLGTD 128 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEcchHHhhChHHHHHHHHHhCCCEEEEecc--CCHHHHHHHHHHHHHcCCce-eeCCC
Confidence 3455777788888899999997766543334579999999999999887763 2221 112222211110 1111
Q ss_pred ----hhhhccC---ccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHH
Q 041113 146 ----LDHALLS---ESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDF 218 (983)
Q Consensus 146 ----~g~~~~~---~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 218 (983)
+....+. ....-+-.||+||+ .+.+-.-+.-+... .+++|.||++|-.- ....+++.|+.++-..+..
T Consensus 129 ~~~~ip~L~~~R~~v~~~GIy~ADVVLV---PLEDGDR~EaL~~m-GK~VI~IDLNPLSR-Tar~A~itIVDni~RA~p~ 203 (248)
T PRK13761 129 EDARIPGLDHERAKVSEDGIYSADVVLV---PLEDGDRTEALVKM-GKTVIAIDLNPLSR-TARTATITIVDNITRAVPN 203 (248)
T ss_pred CcCcCCCCCCccceECcccceeccEEEe---cCCCCcHHHHHHHc-CCeEEEEeCCCccc-ccccCceeeehhHHHHHHH
Confidence 0001111 11123568999998 33222222222232 45789999998422 2356789999888888877
Q ss_pred HHhc
Q 041113 219 LLKV 222 (983)
Q Consensus 219 L~~~ 222 (983)
|.+.
T Consensus 204 m~~~ 207 (248)
T PRK13761 204 MTEY 207 (248)
T ss_pred HHHH
Confidence 7664
No 276
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.10 E-value=1.2 Score=47.30 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEE-------eccC-----CCChHHHHHHHHHHHHHcCC--CcEE--EEEcCCC--CCHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKL-------KVAR-----RADPIKDAEVIQEVRKKVGH--RIEL--RVDANRN--WTYQ 715 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~Ki-------Kig~-----~~~~~~d~~~v~~vr~~~g~--~~~l--~vDaN~~--~~~~ 715 (983)
.+++.+.+.++++.+.|...+|+ |.|. -.+.++=+++|++++++... ++.| |.|+-.. ...+
T Consensus 81 g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ 160 (243)
T cd00377 81 GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLD 160 (243)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHH
Confidence 36688888899999999999999 1221 02456678899999998754 5554 3566444 6899
Q ss_pred HHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEeCC
Q 041113 716 EALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVALDE 757 (983)
Q Consensus 716 ~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~dE 757 (983)
+|++.++...+. +..|+|-|.. .+.++++.+..+.||..--
T Consensus 161 eai~Ra~ay~~AGAD~v~v~~~~~-~~~~~~~~~~~~~Pl~~~~ 203 (243)
T cd00377 161 EAIERAKAYAEAGADGIFVEGLKD-PEEIRAFAEAPDVPLNVNM 203 (243)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC-HHHHHHHHhcCCCCEEEEe
Confidence 999999988776 5779988875 9999999999999988763
No 277
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=93.09 E-value=0.65 Score=45.46 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=69.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|.|++.+..++++..+ |-|.. .....|.++.. .++|+++|.-..+..+.-. .+.+
T Consensus 47 a~~~A~G~a~~~~~~v~~~~~gpg~~-~~~~~l~~a~~--~~~Pvl~i~~~~~~~~~~~-----------------~~~q 106 (154)
T cd06586 47 AAGAAAGYARAGGPPVVIVTSGTGLL-NAINGLADAAA--EHLPVVFLIGARGISAQAK-----------------QTFQ 106 (154)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCCcHH-HHHHHHHHHHh--cCCCEEEEeCCCChhhhcc-----------------Cccc
Confidence 67889998888664444555 77654 56677878877 7899866664444321110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~ 449 (983)
..|...+.+.+......+.+.+++.+.+.+++ ..+||++|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 107 SMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred ccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 46777888888888888888888777777665 34789999874
No 278
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.07 E-value=0.81 Score=51.31 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCC-cEEEEEcC---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHR-IELRVDAN--- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~-~~l~vDaN--- 709 (983)
+.+.+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|++ +.+++-+.
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 4566677777889999999998751 12221 257899999999875 44444332
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceeecCCC---------ChHHHHHHHhhcCCcEEeCCCc
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIEEPVQ---------NEEDIIKYCEESGLPVALDETI 759 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iEeP~~---------~~~~~~~l~~~~~ipIa~dEs~ 759 (983)
.+.+.++++++++.|++.++.+|+=-.. ..+..+++++.+++||..-=.+
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC
Confidence 2358899999999999888887763111 2333455666666666554444
No 279
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.02 E-value=0.43 Score=51.33 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=82.1
Q ss_pred cCCCcEEEEEc--CCCC-CHHHHHHHHhhcccCCCceeecCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHH
Q 041113 698 VGHRIELRVDA--NRNW-TYQEALEFGFLIKDCDLQYIEEPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771 (983)
Q Consensus 698 ~g~~~~l~vDa--N~~~-~~~~a~~~~~~l~~~~i~~iEeP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~ 771 (983)
+|.+..+.|-. |-.- +.+..+.-.++|++.|-+.+-=-++ +.+.+.++++++++|+.+|=+..- +.+.
T Consensus 16 vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~------rla~ 89 (361)
T COG0821 16 VGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDY------RLAL 89 (361)
T ss_pred ecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccH------HHHH
Confidence 45555555432 1111 3444555556677777666666666 345678889999999999987541 2455
Q ss_pred hhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 772 KYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 772 ~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
...+.|++-+.|.|+.+|--.....+++.|+++|+++-++-+++|
T Consensus 90 ~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 90 EAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc
Confidence 566778899999999999888999999999999999999888765
No 280
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.87 E-value=0.48 Score=50.90 Aligned_cols=136 Identities=18% Similarity=0.173 Sum_probs=91.9
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCCC--------------C---CHHHHHHHHhhc
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANRN--------------W---TYQEALEFGFLI 724 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~~--------------~---~~~~a~~~~~~l 724 (983)
++++...|...+ =+|. ..-+|.+.++.+.+.+| ..+.+.+|++.. | +..+.+++++.+
T Consensus 89 ~~~~~~~Ga~~v--ivgt--~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l 164 (254)
T TIGR00735 89 VDKLLRAGADKV--SINT--AAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEV 164 (254)
T ss_pred HHHHHHcCCCEE--EECh--hHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHH
Confidence 445556686664 4565 34567889999999998 578899997532 2 234567788888
Q ss_pred ccCCCceeec---------CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC-ceEEEE-cCCCcCCHHH
Q 041113 725 KDCDLQYIEE---------PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG-IVAIVI-KPSVIGGFEN 793 (983)
Q Consensus 725 ~~~~i~~iEe---------P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~-~~~i~~-k~~~~GGl~~ 793 (983)
++.++..|.= +-++++-++++++.+++||.+.=-+.+..| +..+...+ ++.+.+ +.-..|.+ .
T Consensus 165 ~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~d-----i~~~~~~g~~dgv~~g~a~~~~~~-~ 238 (254)
T TIGR00735 165 EKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEH-----FYEAFTKGKADAALAASVFHYREI-T 238 (254)
T ss_pred HHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-----HHHHHHcCCcceeeEhHHHhCCCC-C
Confidence 8877665432 112467778899889999887776677543 55555545 888665 33344544 4
Q ss_pred HHHHHHHHHHcCCcE
Q 041113 794 AGLIARWAQRHGKMA 808 (983)
Q Consensus 794 ~~~~~~~A~~~gi~~ 808 (983)
..++.+.++++|+++
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 778888999999873
No 281
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=92.69 E-value=0.2 Score=46.06 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=28.1
Q ss_pred cccccccccccceeEEEEEEcccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHHH
Q 041113 897 NDVICKTSMEEQVLRYQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPIM 958 (983)
Q Consensus 897 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~~ 958 (983)
+...+..... ....++++++..+|+ ++....+. +..||||+|||++|-..|.+++
T Consensus 58 Wr~~E~~lN~--~phf~t~I~g~~iHF-ih~rs~~~----~aiPLll~HGWPgSf~Ef~~vI 112 (112)
T PF06441_consen 58 WRKHEARLNS--FPHFKTEIDGLDIHF-IHVRSKRP----NAIPLLLLHGWPGSFLEFLKVI 112 (112)
T ss_dssp HHHHHHHHTT--S-EEEEEETTEEEEE-EEE--S-T----T-EEEEEE--SS--GGGGHHHH
T ss_pred hHHHHHHHHc--CCCeeEEEeeEEEEE-EEeeCCCC----CCeEEEEECCCCccHHhHHhhC
Confidence 3334444443 566666676555444 23333332 2689999999999999888764
No 282
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=92.33 E-value=0.2 Score=59.24 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=38.1
Q ss_pred CceEEEeCCCCCChhhHH-----HHHHHhhC-CCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWI-----PIMKAVSG-SARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~-----~~~~~l~~-~~~vi~~Dl~G~G~S~~ 980 (983)
++|||++||+......|+ .+++.|.+ +|+|+++|++|||.|.+
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~ 236 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQA 236 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccc
Confidence 689999999999989996 78888865 59999999999998865
No 283
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=91.91 E-value=1.6 Score=54.91 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCcEE--EEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRIEL--RVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~~l--~vDa--- 708 (983)
+++.+.++.+++.||..|-|+.+.+ .+++ -=++.+++||+++|+++.+ ++-+
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence 4556667777789999999998731 1222 1257899999999988533 3332
Q ss_pred -CCCCCHHHHHHHHhhcccCCCceeecC--------C------CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh
Q 041113 709 -NRNWTYQEALEFGFLIKDCDLQYIEEP--------V------QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY 773 (983)
Q Consensus 709 -N~~~~~~~a~~~~~~l~~~~i~~iEeP--------~------~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~ 773 (983)
.++|+.++++++++.|++.++.||+== . ...+..+++++..++||..-=.+.+.. ....+
T Consensus 631 ~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~-----~a~~~ 705 (765)
T PRK08255 631 VEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEAD-----HVNSI 705 (765)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHH-----HHHHH
Confidence 457899999999999999888887531 0 011223567777788888776666653 24445
Q ss_pred cCC-CceEEEE
Q 041113 774 AHP-GIVAIVI 783 (983)
Q Consensus 774 ~~~-~~~~i~~ 783 (983)
++. ++|.|-+
T Consensus 706 l~~g~~D~v~~ 716 (765)
T PRK08255 706 IAAGRADLCAL 716 (765)
T ss_pred HHcCCcceeeE
Confidence 543 4676554
No 284
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=91.91 E-value=2.1 Score=47.53 Aligned_cols=135 Identities=12% Similarity=0.206 Sum_probs=87.8
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC--------------CChHHHHHHHHHHHHHcCCC--cEEEEEc
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR--------------ADPIKDAEVIQEVRKKVGHR--IELRVDA 708 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~--------------~~~~~d~~~v~~vr~~~g~~--~~l~vDa 708 (983)
|+...+ .+.+++++.+.++...+.||..|-|.+|.+ .+++.-.+.|+++|++++-- +++++-.
T Consensus 56 p~~vQl-~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~ 134 (318)
T TIGR00742 56 PVALQL-GGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGI 134 (318)
T ss_pred cEEEEE-ccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 333444 356899999988888888999999998864 13444467888999886422 3444421
Q ss_pred CCCCCHHHHHHHHhhcccCCCceee--------cCC--------C--ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHH
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIE--------EPV--------Q--NEEDIIKYCEES-GLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iE--------eP~--------~--~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~ 769 (983)
+..-+.+.++++++.+++.++.+|. |-+ + +++..+++++.. .+||.+.=.+.+..|
T Consensus 135 ~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~d----- 209 (318)
T TIGR00742 135 DPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQ----- 209 (318)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHH-----
Confidence 1111446788999999888877763 211 1 355566777776 799888777777654
Q ss_pred HHhhcCCCceEEEEcCC
Q 041113 770 LEKYAHPGIVAIVIKPS 786 (983)
Q Consensus 770 ~~~~~~~~~~~i~~k~~ 786 (983)
+..... ++|.+.+=-.
T Consensus 210 a~~~l~-g~dgVMigRg 225 (318)
T TIGR00742 210 IKQHLS-HVDGVMVGRE 225 (318)
T ss_pred HHHHHh-CCCEEEECHH
Confidence 333333 6777776433
No 285
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.85 E-value=4.6 Score=41.93 Aligned_cols=141 Identities=17% Similarity=0.131 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++....++.+++.|++.+-+-.-. ..-.+.++++++.++++-++.|=+..-.|.+++.+..+ .|-.|+
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEit~~~----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~----aGA~Fi 92 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVTYTN----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL----AGAQFI 92 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998753 34577899999988533358888888899999876544 678888
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcC-CcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHG-KMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~g-i~~~~~ 811 (983)
=-|.. -.++.+..++.++|+.-|=.-.+ .+....+.|+|++.+-|....|+.....+.. -+. ++++..
T Consensus 93 vsP~~-~~~v~~~~~~~~i~~iPG~~T~~-------E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~---~~p~ip~~at 161 (213)
T PRK06552 93 VSPSF-NRETAKICNLYQIPYLPGCMTVT-------EIVTALEAGSEIVKLFPGSTLGPSFIKAIKG---PLPQVNVMVT 161 (213)
T ss_pred ECCCC-CHHHHHHHHHcCCCEECCcCCHH-------HHHHHHHcCCCEEEECCcccCCHHHHHHHhh---hCCCCEEEEE
Confidence 89988 56677777788999888754222 3445566799999887655566665444433 333 776544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 162 G 162 (213)
T PRK06552 162 G 162 (213)
T ss_pred C
Confidence 3
No 286
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=91.78 E-value=1.1 Score=44.53 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=73.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.++ ++.+|++ ...++.-.+..|.++.. .+.|+++|.-+...-..-+. ......+. ..
T Consensus 47 A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~~~---------~~~~~~~~-~~ 113 (162)
T cd07038 47 AGYAADGYARVK-GLGALVTTYGVGELSALNGIAGAYA--EHVPVVHIVGAPSTKAQASG---------LLLHHTLG-DG 113 (162)
T ss_pred HHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHHHH--cCCCEEEEecCCCccccccc---------cceeeccc-cc
Confidence 566777777776 6766655 56677778899999987 89999998876553211110 00000000 01
Q ss_pred CC-CHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEE
Q 041113 407 NI-SIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVE 449 (983)
Q Consensus 407 ~~-df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~ 449 (983)
.. |...+.+.+--...+|++++++.+.+++|+. .++|+.||+.
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred chHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 22 4678888888889999999998888888753 3689999974
No 287
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=91.66 E-value=0.89 Score=49.88 Aligned_cols=115 Identities=9% Similarity=-0.068 Sum_probs=72.5
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
..+|+.|+ |... +..+.+.+||+.+|+-|-.|-- -+ . ..|.+|.++- +|..|. .-.+||-|
T Consensus 194 A~vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp-~v-d--~~gW~p~~~Q----IGqTGk---------~V~P~lYi 256 (312)
T PRK11916 194 AKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRP-IA-E--GENWMERERY----IGVSGV---------LLKSDLYL 256 (312)
T ss_pred CCEEEECCCCCCChHHHHHHHHHHHHhCCEEEecHH-HH-c--cCCCCChhcE----ECCCCC---------CcCccEEE
Confidence 34566665 5543 3457999999999999866542 10 0 0134554432 344331 12579999
Q ss_pred EeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 166 QIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+|-+=.-.++.+. -..+.+|-||.|++.. -+...|..|++|+.+++.+|++.+
T Consensus 257 A~GISGAiQH~aGm---~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 257 TLGISGQIQHMVGG---NGAKVIVAINKDKNAP-IFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred EeccccHHHHHhhc---ccCCEEEEECCCCCCC-chhhCCeeEeeeHHHHHHHHHHHh
Confidence 99986432233221 1124588999999743 234588999999999999998865
No 288
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.56 E-value=1.7 Score=42.76 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=70.1
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHH-hhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILK-QRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~-~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+..+|-|+.++.+++++++.+=| +...++.|.++. . +++|+++|+-.-+.++....- +.. .+..
T Consensus 46 aa~~aAg~~~~~~~~~v~~~~sG-~gn~~~~l~~a~~~--~~~Pvl~i~g~rg~~~~~~~~---------q~~--~g~~- 110 (157)
T TIGR03845 46 GVGICAGAYLAGKKPAILMQSSG-LGNSINALASLNKT--YGIPLPILASWRGVYKEKIPA---------QIP--MGRA- 110 (157)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCc-HHHHHHHHHHHHHc--CCCCEEEEEeccCCCCCCCcc---------ccc--hhhh-
Confidence 66777777776677899998888 667899999998 6 899999998776665443110 000 0000
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~ 449 (983)
=..+-+.+++.+..+++++++ .++++|+ +.++|+.|=+.
T Consensus 111 ---~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 111 ---TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred ---hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 011223356679999999999 8888876 34689887553
No 289
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=91.44 E-value=0.6 Score=50.66 Aligned_cols=43 Identities=19% Similarity=0.429 Sum_probs=35.0
Q ss_pred CceEEEeCCCCCChhh-H-HHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
+|.||++||+.+++.+ + +.++..+.++ |.++++|.||||.+..
T Consensus 75 ~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n 120 (345)
T COG0429 75 KPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEAN 120 (345)
T ss_pred CceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCcc
Confidence 6899999999987753 4 4567777654 9999999999998864
No 290
>PRK07868 acyl-CoA synthetase; Validated
Probab=91.28 E-value=0.18 Score=65.34 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=34.8
Q ss_pred CceEEEeCCCCCChhhHHHH-----HHHhhC-CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPI-----MKAVSG-SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~-----~~~l~~-~~~vi~~Dl~G~G~S~~~ 981 (983)
++||||+|||+.+..+|+.+ ++.|.+ .|+|+++| ||.|+++
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d---~G~~~~~ 113 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVID---FGSPDKV 113 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEc---CCCCChh
Confidence 78999999999999999975 788865 59999999 5676653
No 291
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.25 E-value=1.9 Score=48.61 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCc--EEEEEc---
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRI--ELRVDA--- 708 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~--~l~vDa--- 708 (983)
++.++.++.+++.||..+-|+-..+ .+.+ --++.|++||+++|++. -+|+=+
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 4566777778889999999997431 1222 12678999999999984 445433
Q ss_pred -C-CCCCHHHHHHHHhhcccCC-CceeecCCC--------ChH------H-HHHHHhhcCCcEEeCCCccCcCCChHHHH
Q 041113 709 -N-RNWTYQEALEFGFLIKDCD-LQYIEEPVQ--------NEE------D-IIKYCEESGLPVALDETIDKFQKDPLNML 770 (983)
Q Consensus 709 -N-~~~~~~~a~~~~~~l~~~~-i~~iEeP~~--------~~~------~-~~~l~~~~~ipIa~dEs~~~~~~~~~~~~ 770 (983)
+ ++|+.++++++++.|++.+ +.|++-=-. ... . -..++....+|+.+--.+.+.. ..
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~-----~A 303 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPE-----QA 303 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHH-----HH
Confidence 2 3789999999999999988 566542211 011 1 2346666678888777766653 34
Q ss_pred HhhcCCC-ceEEE
Q 041113 771 EKYAHPG-IVAIV 782 (983)
Q Consensus 771 ~~~~~~~-~~~i~ 782 (983)
..+++.| +|.|-
T Consensus 304 e~~l~~g~aDlVa 316 (363)
T COG1902 304 EEILASGRADLVA 316 (363)
T ss_pred HHHHHcCCCCEEE
Confidence 5555554 66643
No 292
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.12 E-value=3.1 Score=41.70 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=83.6
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhcccccc-ccchhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILF-LDHLDH 148 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~-~g~~g~ 148 (983)
.+..+++..++..|.-||+|||=+-+....-..+++.+||+.+|+.+-...+. |..+-.-.+-|--.-. + ..++|.
T Consensus 53 ~~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~e~v~La~~~~aklEVNLF~--RteeRv~~I~e~L~~~-Ga~~vLg~ 129 (256)
T COG1701 53 PPALEAIRAAAAALLLAKHPVISVNGNVAALVPEEVVELAEATGAKLEVNLFY--RTEERVRKIAEVLKEH-GAKEVLGT 129 (256)
T ss_pred chHHHHHHHHHHHHHhccCCeEEEcCceeeeCcHHHHHHHHHhCCceEEEeec--cCHHHHHHHHHHHHhc-CcceeecC
Confidence 34556777777788889999998776544334578999999999999887763 2211011111110000 0 011110
Q ss_pred ---------hccC---ccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHH
Q 041113 149 ---------ALLS---ESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFV 216 (983)
Q Consensus 149 ---------~~~~---~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l 216 (983)
..+. ....-+-.||+||+= +.+-.-+.-+..+ .+++|.||++|-.- ....+++.|+.++-..+
T Consensus 130 ~~~~~~ip~l~s~R~~v~~~GIy~ADVVLvp---LEDGDRteaLv~m-GK~ViaIDLNPLSR-Tar~AsItIVDnivRA~ 204 (256)
T COG1701 130 DPDAARIPGLESERGKVSEEGIYSADVVLVP---LEDGDRTEALVRM-GKTVIAIDLNPLSR-TARKASITIVDNIVRAV 204 (256)
T ss_pred CcccccCCCccccccccCcccceeccEEEEe---cCCCcHHHHHHHh-CCeEEEEeCCcccc-ccccCceeeeHHHHHHH
Confidence 0011 111235678999973 2221111222222 45788999998422 23567899988888888
Q ss_pred HHHHhcc
Q 041113 217 DFLLKVQ 223 (983)
Q Consensus 217 ~~L~~~~ 223 (983)
..|.+..
T Consensus 205 p~li~~~ 211 (256)
T COG1701 205 PNLIEFV 211 (256)
T ss_pred HHHHHHH
Confidence 8877653
No 293
>PRK11460 putative hydrolase; Provisional
Probab=91.01 E-value=0.25 Score=52.29 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=30.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGH 975 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~ 975 (983)
.|.|||+||+|++...|.++.+.|.+. +.+..++.+|+
T Consensus 16 ~~~vIlLHG~G~~~~~~~~l~~~l~~~~~~~~~i~~~g~ 54 (232)
T PRK11460 16 QQLLLLFHGVGDNPVAMGEIGSWFAPAFPDALVVSVGGP 54 (232)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHCCCCEEECCCCC
Confidence 689999999999999999999999754 34444445554
No 294
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=90.93 E-value=0.81 Score=45.36 Aligned_cols=103 Identities=12% Similarity=-0.017 Sum_probs=70.5
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ +--++...+..+.++.. .+.|+++|.-+-.....- ....+
T Consensus 47 A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~q 107 (162)
T cd07037 47 AAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYY--SGVPLLVLTADRPPELRG-----------------TGANQ 107 (162)
T ss_pred HHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHh--cCCCEEEEECCCCHHhcC-----------------CCCCc
Confidence 56678888888777777655 34455557789999987 899998887543321110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHH------HHHHHHhhhc-----cCCCEEEEEE
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVE------LEEALSMSQH-----LGTDRVIEVE 449 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~e------L~~aL~~a~~-----~~~p~lIeV~ 449 (983)
..|-..+.+.+--...+|+++++ +.+.+++|+. .+||+.||+.
T Consensus 108 ~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 108 TIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred ccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 45677777777778889988887 6777776652 3689999985
No 295
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=90.76 E-value=2.7 Score=47.83 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChHH----HHHHHHHHHHHcCCCc--EEEEEcC--
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPIK----DAEVIQEVRKKVGHRI--ELRVDAN-- 709 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~~----d~~~v~~vr~~~g~~~--~l~vDaN-- 709 (983)
+++.+.++.+++.||..+-|+.+.. .+++. =++.|++||+++|+++ .+++-+.
T Consensus 150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~ 229 (370)
T cd02929 150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDEL 229 (370)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence 4566677777889999999998751 11221 2578999999999885 4454332
Q ss_pred ----CCCCHHHHHHHHhhcccCCCceee-------cC-C-----C---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHH
Q 041113 710 ----RNWTYQEALEFGFLIKDCDLQYIE-------EP-V-----Q---NEEDIIKYCEESGLPVALDETIDKFQKDPLNM 769 (983)
Q Consensus 710 ----~~~~~~~a~~~~~~l~~~~i~~iE-------eP-~-----~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~ 769 (983)
+.++.++++++++.|++. +.+++ .. . + ..+..+++++..++||..-=.+.+.. .
T Consensus 230 ~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~-----~ 303 (370)
T cd02929 230 IGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPD-----K 303 (370)
T ss_pred cCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHH-----H
Confidence 237899999999988763 23322 11 0 0 13333567777888887765555543 3
Q ss_pred HHhhcCCC-ceEEE
Q 041113 770 LEKYAHPG-IVAIV 782 (983)
Q Consensus 770 ~~~~~~~~-~~~i~ 782 (983)
...+++.+ +|.|.
T Consensus 304 ~~~~l~~g~~D~V~ 317 (370)
T cd02929 304 MVEVVKSGILDLIG 317 (370)
T ss_pred HHHHHHcCCCCeee
Confidence 44455444 66654
No 296
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.64 E-value=4.8 Score=43.81 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=79.1
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEE------e----ccCC-----CChHHHHHHHHHHHHH-cCCCcEE--
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKL------K----VARR-----ADPIKDAEVIQEVRKK-VGHRIEL-- 704 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Ki------K----ig~~-----~~~~~d~~~v~~vr~~-~g~~~~l-- 704 (983)
.+|+..-...+.++..+.+.++++.+.|...+-+ | .|.. .+.++=.++|++++++ .++++.|
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3565554444478999999999999999999888 1 1110 1345557888888877 5666655
Q ss_pred EEEcC-CCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhc-----CCcEEe
Q 041113 705 RVDAN-RNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEES-----GLPVAL 755 (983)
Q Consensus 705 ~vDaN-~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~-----~ipIa~ 755 (983)
|.|+- .....++|++.++...+. +..|+|-+..+.++++++.++. ++|+..
T Consensus 158 RTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 158 RVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred ecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEE
Confidence 45664 345789999999988776 5678886445688988887765 356654
No 297
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=90.41 E-value=0.41 Score=57.83 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=33.0
Q ss_pred CceEEEeCCCCCChh---hHHH-HHHHh-hCCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE---EWIP-IMKAV-SGSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~---~w~~-~~~~l-~~~~~vi~~Dl~G~G~S~~ 980 (983)
.|.||++||++.+.. .|.. ....| ++.|.|+++|+||||.|+.
T Consensus 22 ~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g 69 (550)
T TIGR00976 22 VPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEG 69 (550)
T ss_pred CCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCC
Confidence 689999999998763 2322 33444 5579999999999999975
No 298
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=90.33 E-value=0.96 Score=50.50 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=73.2
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
-.+||.|+ |... +..+.+.+||+.||.-|-.|-- -+ -.|.+|.++- +|..|. .-.+||-|
T Consensus 237 A~vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp-~v----D~GW~p~~~Q----IGqTGk---------~V~P~lYI 298 (356)
T PLN00022 237 AKVVVTGGRGLKSAENFKMLEKLADKLGGAVGASRA-AV----DAGFVPNDLQ----VGQTGK---------IVAPELYI 298 (356)
T ss_pred CCEEEECCCccCCHHHHHHHHHHHHHhCCceeccHH-HH----hCCCCChHhe----eccCCC---------CcCCcEEE
Confidence 34666665 5553 3456899999999998866542 10 0255554432 343331 12689999
Q ss_pred EeCCccccHHHHHHHHhcC-CceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 166 QIGSRITSKRISQMIEECF-PCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~-~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
.+|-+=.-.++.+ .. .+.+|-||.|++.. -+...|..|++|+.+++.+|++.++
T Consensus 299 A~GISGAiQH~~G----m~~s~~IVAIN~D~~AP-IF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 299 AVGISGAIQHLAG----MKDSKVIVAINKDADAP-IFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred EEecchHHHHHhh----cccCCEEEEECCCCCCC-chhhcCeeEeeeHHHHHHHHHHHHH
Confidence 9998632222222 22 34578999998743 2345889999999999999998753
No 299
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.06 E-value=3 Score=46.06 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=58.6
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhc--CCCEEEEeccCC----------CChHHHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEE--GFTAIKLKVARR----------ADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~KiKig~~----------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~ 712 (983)
|+..++ .+.+++++.+.++.+.+. ++..|-+-+|.+ .+++.=.+.++++|+.+ ++.+.+--+.
T Consensus 92 pl~~qi-~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~-- 166 (300)
T TIGR01037 92 PLIASV-YGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLSP-- 166 (300)
T ss_pred cEEEEe-ecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECCC--
Confidence 344444 245788888888887665 389999988753 13444467889999887 3566666553
Q ss_pred CHHHHHHHHhhcccCCCceee
Q 041113 713 TYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iE 733 (983)
+.++..++++.+++.++.+|.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~ 187 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLT 187 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEE
Confidence 446778888888888877774
No 300
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=90.02 E-value=0.58 Score=49.52 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=45.4
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhc-CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEEC-FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
..+++||++|+||+++.-.......... ...++|.|+.++...+.....+..+.+++.+++..|
T Consensus 171 ~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 171 EDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 3467899999999998665544433222 234577799888765422457889999999999765
No 301
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=89.97 E-value=12 Score=38.83 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+.+.|++.+-+..-. ....+.|+++++.++.+ +.+=+..-.+.+++....+ .+..|+
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~----~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~----aGA~fi 87 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNS----PDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLAD----AGGRLI 87 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCC----ccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHH----cCCCEE
Confidence 4588999999999999999999997643 23566899999998643 5667777778887765543 566777
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
=-|.. -.++.+.++..++++..+ +.+.. .+....+.|+|++.+=+...-|+....++..... +.++++.-+
T Consensus 88 vsp~~-~~~v~~~~~~~~~~~~~G--~~t~~-----E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvvaiG 158 (206)
T PRK09140 88 VTPNT-DPEVIRRAVALGMVVMPG--VATPT-----EAFAALRAGAQALKLFPASQLGPAGIKALRAVLP-PDVPVFAVG 158 (206)
T ss_pred ECCCC-CHHHHHHHHHCCCcEEcc--cCCHH-----HHHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEEEC
Confidence 77877 445555666778998888 66653 3555566789998875544445555444333221 248766544
No 302
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.96 E-value=3.6 Score=43.18 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
..+++++.+.++.. +.++..|-+-+|.|. +++.-.+.++++|+. ++.+.|=-.-.|+..+.+
T Consensus 76 ~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 76 FVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCCCcchHH
Confidence 45788888777665 558999999887642 444445667777742 233333323335556778
Q ss_pred HHHhhcccCCCcee--ecCCC-----ChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 719 EFGFLIKDCDLQYI--EEPVQ-----NEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 719 ~~~~~l~~~~i~~i--EeP~~-----~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
++++.+++.+..+| .+=.+ +++.++++++..+ +||.+.=.+.+..| ...+.+.|+|.+++
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed-----a~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIES-----AKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHH-----HHHHHHhCCCeEEE
Confidence 88898988887654 32222 3666788888874 99999888888764 33444468888775
No 303
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=89.60 E-value=0.38 Score=64.78 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
+++++|+||+++++..|..+.+.|.++++|+++|+||||.+.
T Consensus 1068 ~~~l~~lh~~~g~~~~~~~l~~~l~~~~~v~~~~~~g~~~~~ 1109 (1296)
T PRK10252 1068 GPTLFCFHPASGFAWQFSVLSRYLDPQWSIYGIQSPRPDGPM 1109 (1296)
T ss_pred CCCeEEecCCCCchHHHHHHHHhcCCCCcEEEEECCCCCCCC
Confidence 679999999999999999999999999999999999999764
No 304
>PRK08611 pyruvate oxidase; Provisional
Probab=89.53 E-value=1.7 Score=52.87 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=76.8
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +.-.+..|.+|-. .++|+++|.-.-....+-+ ...
T Consensus 55 A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gla~A~~--~~~Pvl~ItG~~~~~~~~~-----------------~~~ 114 (576)
T PRK08611 55 AALAAAAYAKLTGKIGVCLSIGGPG-AIHLLNGLYDAKM--DHVPVLALAGQVTSDLLGT-----------------DFF 114 (576)
T ss_pred HHHHHHHHHHHhCCceEEEECCCCc-HHHHHHHHHHHhh--cCCCEEEEecCCcccccCC-----------------CCc
Confidence 56678888777777877766 444 4446789999887 8999998887655432110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
+.+|...+.+.+-....+|++++++...+.+|+ ...||+.|++..|-
T Consensus 115 q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv 165 (576)
T PRK08611 115 QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDL 165 (576)
T ss_pred cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhh
Confidence 346888899998888899999999888877764 34799999998653
No 305
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.49 E-value=1.2 Score=54.18 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=75.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-.++++.+|++ ---|+.-.+..+.+|-. .+.|+++|.-.-.....- ....+
T Consensus 55 A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 115 (572)
T PRK06456 55 AAHAADGYARASGVPGVCTATSGPGTTNLVTGLITAYW--DSSPVIAITGQVPRSVMG-----------------KMAFQ 115 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHHHh--hCCCEEEEecCCCccccC-----------------CCCcc
Confidence 56778888777778888874 23344447799999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+.+|+. .+||+.|++..|-
T Consensus 116 ~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 116 EADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred ccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 467888888888889999999998888888764 3699999998653
No 306
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=89.40 E-value=0.76 Score=50.36 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccchhhhc-cchHHHHHhhcc-C---CCEEEEEEeCCCCccccCCCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHD-TNGLAILKQRMK-R---KPILMLVINNHGGAIFSLLPIADRTE 394 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDGsf~~~-~~eL~Ta~~~~~-~---lpv~iiV~NN~g~g~~~~~~~~~~~~ 394 (983)
|-+|| +++-|.||++-+ +.-|+|++|||.+==. ...-|.+.+ + + --.++=|++=|||.|-..
T Consensus 140 GELGY--aLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~k--flnP~~dGaVLPILhLNG~KI~~p-------- 207 (379)
T PF09364_consen 140 GELGY--ALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNK--FLNPATDGAVLPILHLNGYKISNP-------- 207 (379)
T ss_dssp SSTS---HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGG--SS-TTTS-EEEEEEEE-SBSSSSB--------
T ss_pred cchhh--HHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccc--eeCcccCceeeceEEecCccccCC--------
Confidence 78999 999999999999 9999999999997422 122222222 2 1 123444555567766421
Q ss_pred ccccccccccCCCCCHHHHHHHcCCceeeeCC--HHHHHHHHHh
Q 041113 395 PRILDQYFYTTHNISIQNLCLAHGLNHVQVKT--KVELEEALSM 436 (983)
Q Consensus 395 ~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~--~~eL~~aL~~ 436 (983)
. .+....+-++..+-+++|..-+.|+. ++++...+..
T Consensus 208 -T----il~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ 246 (379)
T PF09364_consen 208 -T----ILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAA 246 (379)
T ss_dssp ------HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHH
T ss_pred -e----EeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHH
Confidence 1 11112233466666777776666654 3344443333
No 307
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.35 E-value=12 Score=38.31 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-... ..-.+.|+++++.+ ++ +.|=+-.-.|.+++.+..+ .|-.|+
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t----p~a~~~I~~l~~~~-~~--~~vGAGTVl~~e~a~~ai~----aGA~Fi 80 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT----PAALDAIRAVAAEV-EE--AIVGAGTILNAKQFEDAAK----AGSRFI 80 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----ccHHHHHHHHHHHC-CC--CEEeeEeCcCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998754 33567788889888 44 7788888899999876644 688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.- -.++.+..++.++|..-|=.-.+ ......+.|++++.+=|. ..||..-...+..-- -+++++..
T Consensus 81 vSP~~-~~~vi~~a~~~~i~~iPG~~Tpt-------Ei~~A~~~Ga~~vK~FPa~~~GG~~yikal~~pl--p~~~l~pt 150 (201)
T PRK06015 81 VSPGT-TQELLAAANDSDVPLLPGAATPS-------EVMALREEGYTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCPT 150 (201)
T ss_pred ECCCC-CHHHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhC--CCCcEEec
Confidence 99988 56666677788999988865443 255556679999888775 567776555554433 26776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 151 G 151 (201)
T PRK06015 151 G 151 (201)
T ss_pred C
Confidence 3
No 308
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=89.32 E-value=0.72 Score=49.15 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
..+.++|++|++|+++.-........ .....++|.|+.++..+.. ..++.+.+|+.++|..|.+.
T Consensus 173 ~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~--~~~~~i~~~~~~~l~~l~~~ 239 (242)
T PRK00481 173 EALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDS--LFDLVIHGKAGEVVPELVEE 239 (242)
T ss_pred HHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCC--ccCEEEECCHHHHHHHHHHH
Confidence 34578999999999976544443332 3334568889999876654 36789999999999988764
No 309
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=89.21 E-value=0.8 Score=48.76 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=48.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+.+||++|+||+++.-........ .....+++.|+.++..++. ..++.+.+++.+++..|.+.+
T Consensus 174 ~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~--~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 174 RLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDD--IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCc--ceeEEEeCCHHHHHHHHHHHh
Confidence 44579999999999986555443322 2233468889998877664 468899999999999998753
No 310
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.97 E-value=7.9 Score=40.39 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCc-EEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRI-ELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~-~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
..++++..+.++.+++.|++.+-+-.-. ..-.+.++.+++.++... ++.|=+-.-.|.+++.+.. +.|-.|
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~----~aGA~F 94 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYI----QLGANF 94 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHH----HcCCCE
Confidence 4688999999999999999999998754 224556666665443211 4788888889999987654 368889
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
+=-|.- -.++.+..++.++|+.-|=.-.+ .+....+.|++++.+=|...+|+.-...+..-. -+++++..
T Consensus 95 iVsP~~-~~~v~~~~~~~~i~~iPG~~Tps-------Ei~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~--p~i~~~pt 164 (222)
T PRK07114 95 IVTPLF-NPDIAKVCNRRKVPYSPGCGSLS-------EIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPM--PWTKIMPT 164 (222)
T ss_pred EECCCC-CHHHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEECcccccCHHHHHHHhccC--CCCeEEeC
Confidence 999988 56677777788999988865433 355566789999888887788866554444333 24665544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 165 G 165 (222)
T PRK07114 165 G 165 (222)
T ss_pred C
Confidence 3
No 311
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=88.60 E-value=5.4 Score=42.16 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~ 718 (983)
+.+++++.+.++...+ +...|-+-+|.+. +++.=.+.++++|+ . ++.+.+=-.-.|+ ++.+
T Consensus 81 g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~--~~pVsvKir~g~~-~~~~ 155 (233)
T cd02911 81 SSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-T--GVPVSVKIRAGVD-VDDE 155 (233)
T ss_pred CCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c--CCCEEEEEcCCcC-cCHH
Confidence 4578888877776655 4588888877531 24444677888887 3 3444444444577 7788
Q ss_pred HHHhhcccCCCceee-----cCCC-ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 719 EFGFLIKDCDLQYIE-----EPVQ-NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 719 ~~~~~l~~~~i~~iE-----eP~~-~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
++++.+++.++.+|= +... +++.+++++ .++||.+.=.+.+..+ ...++..|+|.+++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnGgI~s~ed-----a~~~l~~GaD~Vmi 219 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNNSVTTIES-----AKEMFSYGADMVSV 219 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEECCcCCHHH-----HHHHHHcCCCEEEE
Confidence 888989888776651 1101 344444444 5789888877777653 44455567888775
No 312
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=88.55 E-value=1.6 Score=52.96 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +.-.+..|..|-. .+.|+++|.-.-..+.+-+ ...
T Consensus 65 A~~~A~gyar~tg~~gv~~~t~GPG-~~N~~~gl~~A~~--~~~Pvl~ItG~~~~~~~~~-----------------~~~ 124 (571)
T PRK07710 65 AIHAAEGYARISGKPGVVIATSGPG-ATNVVTGLADAMI--DSLPLVVFTGQVATSVIGS-----------------DAF 124 (571)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCCCEEEEeccCCccccCC-----------------CCc
Confidence 67788888887788888776 454 4446789999887 8999988886544331110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+.+|...+.+.+=....+|++++++...+++|+. .+||+.|++..|
T Consensus 125 q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 125 QEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 3467888888887788999999998888888763 259999999876
No 313
>PRK08322 acetolactate synthase; Reviewed
Probab=88.52 E-value=1.8 Score=52.25 Aligned_cols=105 Identities=9% Similarity=-0.033 Sum_probs=75.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++ -.-|+.-.+..+..|-. .++|+++|.-.=....+- . ...+
T Consensus 50 A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~--~~~Pll~i~g~~~~~~~~-------------~----~~~q 110 (547)
T PRK08322 50 AAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQL--GGMPMVAITGQKPIKRSK-------------Q----GSFQ 110 (547)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHHHhh--cCCCEEEEeccccccccC-------------C----Cccc
Confidence 67788888888777777665 34455567899999987 899998887543222110 0 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+--...+|++++++.+.+.+|+. .+||+.|++..|
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 111 IVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred cccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 467888888887788999999999888888763 258999999875
No 314
>PRK07586 hypothetical protein; Validated
Probab=88.50 E-value=1.7 Score=52.02 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ ---|+.-.+..+.+|.. .+.|+++|.-.-.....- ....+
T Consensus 51 A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 111 (514)
T PRK07586 51 ATGAADGYARMAGKPAATLLHLGPGLANGLANLHNARR--ARTPIVNIVGDHATYHRK-----------------YDAPL 111 (514)
T ss_pred HHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHHHHh--cCCCEEEEecCCchhccC-----------------CCccc
Confidence 56677787777777777654 33445667888888887 899998887653322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++.+.+++|+. .+||+.|++..|-
T Consensus 112 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 112 TSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred ccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 468888888888888999999998888887763 3699999999864
No 315
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=88.48 E-value=1.7 Score=52.88 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=76.1
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.++++- --|+.-.++.+.+|.. .+.|+++|.-.=....+- ....+
T Consensus 50 A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~~--~~~Pvl~I~G~~~~~~~~-----------------~~~~q 110 (586)
T PRK06276 50 AAHAADGYARASGKVGVCVATSGPGATNLVTGIATAYA--DSSPVIALTGQVPTKLIG-----------------NDAFQ 110 (586)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHh--cCCCEEEEeCCCCccccC-----------------CCCCc
Confidence 677888888887777777653 3455557899999987 899998887422211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
.+|...+++.+-....+|++++++...+.+|++. +||+.|+|..|
T Consensus 111 ~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 111 EIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred cccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 4688889999988899999999988888887642 68999999876
No 316
>PRK08617 acetolactate synthase; Reviewed
Probab=88.23 E-value=1.8 Score=52.39 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=75.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|... .+..+.+|.. .+.|+++|.-.-....+.+ ...
T Consensus 54 A~~~A~gyar~tg~~gv~~vt~GpG~~N-~l~gl~~A~~--~~~PvlvisG~~~~~~~~~-----------------~~~ 113 (552)
T PRK08617 54 AAFMAAAIGRLTGKPGVVLVTSGPGVSN-LATGLVTATA--EGDPVVAIGGQVKRADRLK-----------------RTH 113 (552)
T ss_pred HHHHHHhHhhhcCCCEEEEECCCCcHhH-hHHHHHHHhh--cCCCEEEEecCCcccccCC-----------------CCc
Confidence 55677777777777888776 554444 6789999887 8999988886433221110 012
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+.+|-..+.+.+-....+|++++++...+++|++ .+||+.||+..|-
T Consensus 114 q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 114 QSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred cccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhh
Confidence 4467778888888889999999998888888764 2589999998763
No 317
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=88.12 E-value=1 Score=47.43 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=45.0
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHH
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFL 219 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 219 (983)
.+.++|++|++|+++.-........ .....++|.|+.++..+. ...++.|.+|+..+|.+|
T Consensus 161 ~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~--~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 161 ALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS--PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC--CcCCEEEECCHHHHHHHh
Confidence 4578999999999875544433333 223446888999988765 456889999999999886
No 318
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.00 E-value=8.1 Score=41.97 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=87.5
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCc-----------EEEEEcC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRI-----------ELRVDAN 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~-----------~l~vDaN 709 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. |-.+ .-..+..
T Consensus 78 VPV~lHLDHg~~~e----~i~~ai~~GftSVM~DgS~-lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 152 (285)
T PRK07709 78 VPVAIHLDHGSSFE----KCKEAIDAGFTSVMIDASH-HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG 152 (285)
T ss_pred CcEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccc
Confidence 56655665555554 3556678899999998665 56788888777776532 1110 0011112
Q ss_pred CCC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 710 RNW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
.-| ++++|.+|.++..- +|+ |-.+|--+++-++++++.+++|+.+.=.--... +++++.+..|+
T Consensus 153 ~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~-Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~----e~~~~ai~~Gi 227 (285)
T PRK07709 153 VIYADPAECKHLVEATGIDCLAPALGSVHGP-YKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPT----ADIEKAISLGT 227 (285)
T ss_pred ccCCCHHHHHHHHHHhCCCEEEEeecccccC-cCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCH----HHHHHHHHcCC
Confidence 226 89999999886522 122 334564479999999999999998876544432 46888888898
Q ss_pred eEEEEcCCC
Q 041113 779 VAIVIKPSV 787 (983)
Q Consensus 779 ~~i~~k~~~ 787 (983)
.=||+....
T Consensus 228 ~KiNi~T~l 236 (285)
T PRK07709 228 SKINVNTEN 236 (285)
T ss_pred eEEEeChHH
Confidence 777887653
No 319
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=87.98 E-value=15 Score=37.91 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|++.+-+-... ..-.+.++++++.+ + ++.|=|-.-.|.+++.+..+ .|-.|+
T Consensus 16 ~~~~e~a~~~~~al~~~Gi~~iEit~~t----~~a~~~i~~l~~~~-~--~~~vGAGTVl~~~~a~~a~~----aGA~Fi 84 (204)
T TIGR01182 16 IDDVDDALPLAKALIEGGLRVLEVTLRT----PVALDAIRLLRKEV-P--DALIGAGTVLNPEQLRQAVD----AGAQFI 84 (204)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCC----ccHHHHHHHHHHHC-C--CCEEEEEeCCCHHHHHHHHH----cCCCEE
Confidence 4688999999999999999999998743 34567788999888 4 47888888899999876654 678889
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|.. -.++.+.+++.++|+.-|=. +.. ......+.|++.+.+=|.- .||..-...+..-. -+++++..
T Consensus 85 vsP~~-~~~v~~~~~~~~i~~iPG~~--Tpt-----Ei~~A~~~Ga~~vKlFPA~~~GG~~yikal~~pl--p~i~~~pt 154 (204)
T TIGR01182 85 VSPGL-TPELAKHAQDHGIPIIPGVA--TPS-----EIMLALELGITALKLFPAEVSGGVKMLKALAGPF--PQVRFCPT 154 (204)
T ss_pred ECCCC-CHHHHHHHHHcCCcEECCCC--CHH-----HHHHHHHCCCCEEEECCchhcCCHHHHHHHhccC--CCCcEEec
Confidence 88877 55666677788999988654 332 2555566799998887755 67777665555444 36776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 155 G 155 (204)
T TIGR01182 155 G 155 (204)
T ss_pred C
Confidence 3
No 320
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.94 E-value=1.8 Score=52.70 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=75.9
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-+++++.+|++ |= |+.-.+..+.+|.. .+.|+++|.-.-.....- . ...
T Consensus 54 A~~mAdgyar~tg~~gv~~vt~GP-G~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~~~~-------------~----~~~ 113 (574)
T PRK06466 54 ATHMADGYARATGKTGVVLVTSGP-GATNAITGIATAYM--DSIPMVVLSGQVPSTLIG-------------E----DAF 113 (574)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHHHHh--cCCCEEEEecCCCccccC-------------C----Ccc
Confidence 55677887777777777766 44 44447899999987 899998888644322100 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
+.+|...+.+.+=....+|++++++...+++|+.. +||+.|++..|
T Consensus 114 q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 114 QETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 34688889998888899999999999988887642 69999999877
No 321
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=87.92 E-value=1.7 Score=52.09 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEE--EccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCV--VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i--~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-+++++-||+ .|=|+ ...+..|.+|.. -+.|+++|.-.=. ...+ -....
T Consensus 51 Aa~mAdgyar~TGkpgV~~~tsGPGa-tN~~tgla~A~~--d~~Pll~itGqv~-~~~~----------------g~~af 110 (550)
T COG0028 51 AAFAADGYARATGKPGVCLVTSGPGA-TNLLTGLADAYM--DSVPLLAITGQVP-TSLI----------------GTDAF 110 (550)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcH-HHHHHHHHHHHh--cCCCEEEEeCCcc-cccc----------------Ccchh
Confidence 6788888888887776664 35544 456789999987 7899988875211 1111 01122
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+=-+.++|.+++++...+++|++ .+||++|++..|-
T Consensus 111 Qe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 111 QEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 4679999999998899999999999999999874 3589999988664
No 322
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=87.91 E-value=2.9 Score=45.97 Aligned_cols=114 Identities=8% Similarity=-0.023 Sum_probs=72.2
Q ss_pred ceEEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEE
Q 041113 88 KGLLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVII 165 (983)
Q Consensus 88 rPvIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl 165 (983)
-.+|+.|+ |... +..+.+.+||+.+|.-|-.|--. . . ..|.+|.++- +|..|. .-.+||-|
T Consensus 195 A~vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~-v-d--~~gW~p~~~Q----IGqTGk---------~V~P~lYi 257 (313)
T PRK03363 195 ARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPV-A-E--NEKWMEHERY----VGISNL---------MLKPELYL 257 (313)
T ss_pred CCEEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHH-H-c--cCCCCCHHhe----ecCCCC---------CcCccEEE
Confidence 34666665 5543 34568999999999998665410 0 0 0135554322 444431 12579999
Q ss_pred EeCCccccHHHHHHHHhcCC-ceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 166 QIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 166 ~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
.+|-+=.-.++.+ ... +.+|-||.||+.. -+...|..|++|+.+++.+|++.+
T Consensus 258 A~GISGaiQH~~G----m~~s~~IVAIN~Dp~AP-IF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 258 AVGISGQIQHMVG----ANASQTIFAINKDKNAP-IFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred EEccccHHHHHhh----cccCCEEEEEcCCCCCC-chhhCCeeEeeeHHHHHHHHHHHh
Confidence 9998632222222 222 4578999998743 234588999999999999998865
No 323
>PRK10162 acetyl esterase; Provisional
Probab=87.66 E-value=1.6 Score=48.62 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=34.5
Q ss_pred CceEEEeCCCC---CChhhHHHHHHHhhC--CCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFL---GTGEEWIPIMKAVSG--SARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~---~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~ 979 (983)
.|.||++||-+ ++..+|..+...|++ ++.|+++|.|......
T Consensus 81 ~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~ 127 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEAR 127 (318)
T ss_pred CCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 68899999966 677789999888875 5999999999765543
No 324
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=87.56 E-value=2.2 Score=51.50 Aligned_cols=106 Identities=15% Similarity=0.010 Sum_probs=75.2
Q ss_pred hHHHHHhhhhccCceEEEEEccc-hhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDI-SFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDG-sf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++-=| |+.-.+..+.+|-. .+.|+++|.-.-....+- .+..+
T Consensus 51 A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 111 (549)
T PRK06457 51 AALAASVEAKITGKPSACMGTSGPGSIHLLNGLYDAKM--DHAPVIALTGQVESDMIG-----------------HDYFQ 111 (549)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHHHHh--cCCCEEEEecCCCccccC-----------------CCccc
Confidence 55677887777778888775322 45556789999987 899998888643221100 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+++|+. .+||+.|++..|-
T Consensus 112 ~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv 161 (549)
T PRK06457 112 EVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDI 161 (549)
T ss_pred ccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhH
Confidence 467788888777788899999998888877753 4699999998763
No 325
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.35 E-value=2.3 Score=51.70 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..+.+|-. .+.|+++|.-.-.....- ....+
T Consensus 54 A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A~~--~~~Pvlvi~G~~~~~~~~-----------------~~~~q 114 (574)
T PRK06882 54 AVHMADGYARSTGKVGCVLVTSGPGATNAITGIATAYT--DSVPLVILSGQVPSNLIG-----------------TDAFQ 114 (574)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccC-----------------CCccc
Confidence 56778887777777777665 33345557899999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+=....+|++++++...+++|+. .+||+.|+|..|-
T Consensus 115 ~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06882 115 ECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM 165 (574)
T ss_pred ccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHH
Confidence 468888888888889999999998887777764 3699999999873
No 326
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=87.28 E-value=7.2 Score=43.00 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=89.7
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-------------ChHHHHHHHHHHHHHcCCCcEEEEEcCC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-------------DPIKDAEVIQEVRKKVGHRIELRVDANR 710 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 710 (983)
.|+.+++.+..+++++.+.++.+.+.|+..|-+-++.+. +++.=.+.++++|+.+. +.+.|=-..
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~Pv~vKl~~ 177 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK--IPVIAKLTP 177 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC--CCeEEECCC
Confidence 344555533237888898888887779999999887631 23333566778887653 333332221
Q ss_pred CCCHHHHHHHHhhcccCCCcee----------------ecCCC-------------------ChHHHHHHHhhc--CCcE
Q 041113 711 NWTYQEALEFGFLIKDCDLQYI----------------EEPVQ-------------------NEEDIIKYCEES--GLPV 753 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~i----------------EeP~~-------------------~~~~~~~l~~~~--~ipI 753 (983)
+..+..++++.+++.+...| +.|.+ .++.+.++++.. .+||
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 178 --NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred --CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 23356667777777665544 12211 145567788888 7999
Q ss_pred EeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC-CHHHHHHH
Q 041113 754 ALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG-GFENAGLI 797 (983)
Q Consensus 754 a~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~~ 797 (983)
.+.=-+.+..| ..+++..|++.+++--.... |..-..++
T Consensus 256 ig~GGI~~~~d-----a~~~l~aGA~~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 256 SGIGGIESWED-----AAEFLLLGASVVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred EEECCCCCHHH-----HHHHHHcCCChheEceeecccCCcHHHHH
Confidence 99888887654 34444578888888766554 65544444
No 327
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.22 E-value=1.9 Score=52.20 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=74.4
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++- --|+...+..|.+|-. .+.|+++|.-.=....+. ....+
T Consensus 57 A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 117 (561)
T PRK06048 57 AAHAADGYARATGKVGVCVATSGPGATNLVTGIATAYM--DSVPIVALTGQVPRSMIG-----------------NDAFQ 117 (561)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHhh--cCCCEEEEeccCCccccC-----------------CCCcc
Confidence 677888888887777777653 3345557899999987 899998886422211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..|...+.+.+-....+|++++++...+.+|++ .+||+.|+|..|
T Consensus 118 ~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 118 EADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred ccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 467778888877778899999998888888764 369999999875
No 328
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.09 E-value=2 Score=52.09 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| ....+..|.++-. .+.|+++|.-.-.....- . ...
T Consensus 64 A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~A~~--~~~Pvl~I~G~~~~~~~~-------------~----~~~ 123 (570)
T PRK06725 64 AIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLADAYM--DSIPLVVITGQVATPLIG-------------K----DGF 123 (570)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCcCEEEEecCCCccccc-------------C----CCC
Confidence 56788888887777766654 444 5556899999987 899998888543322110 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++...|++|+.. +||+.|++..|-
T Consensus 124 q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 124 QEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 34688889999988899999999999999888742 699999998763
No 329
>PLN02442 S-formylglutathione hydrolase
Probab=87.00 E-value=1.2 Score=48.65 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=38.3
Q ss_pred ccCceeEEEEeecCCccCCCCceEEEeCCCCCChhhHHHH---HHHhhC-CCEEEEEcCCCCC
Q 041113 918 SKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEWIPI---MKAVSG-SARCISIDLPGHG 976 (983)
Q Consensus 918 ~~~~~~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~w~~~---~~~l~~-~~~vi~~Dl~G~G 976 (983)
+..+.|.+++.. +.. ....|.|+|+||++++...|... ...++. .+.||.||.+++|
T Consensus 29 ~~~~~~~vy~P~-~~~-~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g 89 (283)
T PLN02442 29 GCSMTFSVYFPP-ASD-SGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRG 89 (283)
T ss_pred CCceEEEEEcCC-ccc-CCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCC
Confidence 345556555544 111 11258999999999999888553 344443 5999999998876
No 330
>PRK07524 hypothetical protein; Provisional
Probab=86.94 E-value=2.6 Score=50.78 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=77.5
Q ss_pred hHHHHHhhhhccCceEEEE-EccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCV-VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i-~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|+ +..-|+.-.+..|..|.+ .++|+++|.-.......-+. . ..+ ..
T Consensus 51 A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~i~G~~~~~~~~~~-----------~-~~~--~~ 114 (535)
T PRK07524 51 AGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQAYA--DSIPMLVISSVNRRASLGKG-----------R-GKL--HE 114 (535)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHh--cCCCEEEEeCCCChhhcCCC-----------C-ccc--cc
Confidence 6778888888877775554 444555567899999988 89999988865443211100 0 000 01
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+-..+.+|++++++.+.+.+|+. .+||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (535)
T PRK07524 115 LPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDV 165 (535)
T ss_pred cccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhH
Confidence 257888999998899999999999998888763 3699999998663
No 331
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=86.77 E-value=3.3 Score=50.44 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=78.0
Q ss_pred hHHHHHhhhhcc-CceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGC-NKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-++ +++.+|++ .=.|+...+..|.+|.. .+.|+++|.-.-.....- . +..
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~--~~~Pvl~I~G~~~~~~~~-------------~----~~~ 113 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASA--DSIPILCITGQAPRARLH-------------K----EDF 113 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccC-------------C----Ccc
Confidence 566778887777 67877764 23346667899999987 899998888544322110 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.|++|+. .+||+.|+|..|-
T Consensus 114 q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 114 QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 3468888999998889999999999999988864 3589999999874
No 332
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.74 E-value=2.5 Score=51.35 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=76.2
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| +.-.+..+.++.. .+.|+++|.-.-.....- . +..
T Consensus 54 A~~mAdgyar~tg~~gv~~~t~GpG-~~n~l~gia~A~~--~~~Pvl~i~G~~~~~~~~-------------~----~~~ 113 (572)
T PRK08979 54 AVHMADGYARATGKVGVVLVTSGPG-ATNTITGIATAYM--DSIPMVVLSGQVPSNLIG-------------N----DAF 113 (572)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCch-HhHHHHHHHHHhh--cCCCEEEEecCCCccccC-------------C----CCC
Confidence 56788888877777777665 554 5557899999887 899998887533221100 0 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+=....+|++++++.+.|++|+. .+||+.|+|..|-
T Consensus 114 q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 114 QECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred cccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 3468888899888889999999999888888764 3589999998763
No 333
>PRK05858 hypothetical protein; Provisional
Probab=86.70 E-value=2.9 Score=50.48 Aligned_cols=106 Identities=7% Similarity=-0.023 Sum_probs=75.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+.+++.+|++ .--|+.-.++.+.+|.. .+.|+++|.-+-... ... .+..+
T Consensus 54 A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~A~~--~~~Pvl~i~g~~~~~-~~~----------------~~~~q 114 (542)
T PRK05858 54 AAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAAAQF--NQSPLVVLGGRAPAL-RWG----------------MGSLQ 114 (542)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHHHHh--cCCCEEEEeCCCCcc-cCC----------------CCCCc
Confidence 67788898888877777764 34556667899999987 899998766322211 100 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|-..+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 115 EIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred ccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 467778888888889999999999888888763 3689999998764
No 334
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=86.57 E-value=6.7 Score=44.26 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=88.6
Q ss_pred HHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee------
Q 041113 660 ASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE------ 733 (983)
Q Consensus 660 ~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE------ 733 (983)
.+.++.+.+.++..+ +++.-.++++++|+.. -.+++++ +...+.++++.+.+.++.+|-
T Consensus 102 a~aa~~~~e~~~~~~--------~p~l~~~ii~~vr~a~-VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~ 166 (369)
T TIGR01304 102 AAATRLLQELHAAPL--------KPELLGERIAEVRDSG-VITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLV 166 (369)
T ss_pred HHHHHHHHHcCCCcc--------ChHHHHHHHHHHHhcc-eEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccch
Confidence 444444444555542 3444567888888863 3345555 234667778888787777665
Q ss_pred -----cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCC----------HHHHHHHH
Q 041113 734 -----EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG----------FENAGLIA 798 (983)
Q Consensus 734 -----eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GG----------l~~~~~~~ 798 (983)
-.-.++.++.++.+..++||..+. +.+.. ....+.+.|+|.|. .+..|+ +.....++
T Consensus 167 ~q~~~sg~~~p~~l~~~i~~~~IPVI~G~-V~t~e-----~A~~~~~aGaDgV~--~G~gg~~~~~~~lg~~~p~~~ai~ 238 (369)
T TIGR01304 167 SAEHVSTSGEPLNLKEFIGELDVPVIAGG-VNDYT-----TALHLMRTGAAGVI--VGPGGANTTRLVLGIEVPMATAIA 238 (369)
T ss_pred hhhccCCCCCHHHHHHHHHHCCCCEEEeC-CCCHH-----HHHHHHHcCCCEEE--ECCCCCcccccccCCCCCHHHHHH
Confidence 121257888899888999998744 55543 35555667999877 333232 22222333
Q ss_pred HHHHH-------cC---CcEEeCCCCchHHHHHHHHHHHh
Q 041113 799 RWAQR-------HG---KMAVVSAAFESGLGLSAYIIFSS 828 (983)
Q Consensus 799 ~~A~~-------~g---i~~~~~~~~es~ig~~a~~~laa 828 (983)
+.+++ .| ++++..+.+.++-..+.++.+.|
T Consensus 239 d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGA 278 (369)
T TIGR01304 239 DVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGA 278 (369)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence 33322 33 88888888888877777766544
No 335
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=86.41 E-value=2.6 Score=51.02 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=76.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++-+|++ .--|+.-.++.+.+|.. .+.|+++|.-.-..... . .. .+..+
T Consensus 52 A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~A~~--~~~Pvl~I~G~~~~~~~-~------------~~--~~~~q 114 (554)
T TIGR03254 52 AGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATT--NCFPMIMISGSSERHIV-D------------LQ--QGDYE 114 (554)
T ss_pred HHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHHHHh--cCCCEEEEEccCCcccc-c------------cC--CCCcc
Confidence 56677787777777766654 35556667899999987 89999998875442210 0 00 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....+|++++++.+.|.+|+. .+||+.|++..|
T Consensus 115 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 115 EMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred hhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 468888999998899999999998888887753 358899999865
No 336
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=86.39 E-value=5.5 Score=41.58 Aligned_cols=127 Identities=20% Similarity=0.362 Sum_probs=86.6
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCC------CCCHH---HHHHHHhhcccCCCcee
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR------NWTYQ---EALEFGFLIKDCDLQYI 732 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~------~~~~~---~a~~~~~~l~~~~i~~i 732 (983)
.++++++.|..++=+ |. -.-+|.++++.+.+.+|..+.+.+|++. +|... +..+++++++++++.-|
T Consensus 89 ~v~~ll~~G~~rVii--Gt--~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~i 164 (241)
T COG0106 89 DVEALLDAGVARVII--GT--AAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHI 164 (241)
T ss_pred HHHHHHHCCCCEEEE--ec--ceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeE
Confidence 466777889998665 43 2357888999999999999999999987 57432 46677777777654321
Q ss_pred -------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceE-EEEcCCCcCCH--HHHHHH
Q 041113 733 -------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVA-IVIKPSVIGGF--ENAGLI 797 (983)
Q Consensus 733 -------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~-i~~k~~~~GGl--~~~~~~ 797 (983)
|-=+. |.+-+++|.+.+.+|+-.-=-+.+..| ++.+.+. |+.. ++=+.-..|.+ .++++.
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~D-----i~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~ 237 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDD-----IKALKELSGVEGVIVGRALYEGKFTLEEALAC 237 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHH-----HHHHHhcCCCcEEEEehHHhcCCCCHHHHHHH
Confidence 22233 678889999999999877766777654 4444444 6644 44566666665 444433
No 337
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.29 E-value=2.1 Score=52.18 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=76.7
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++ ---|+.-.++.+.+|.. .+.|+++|.-.-......+ ...+
T Consensus 61 A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~q 121 (595)
T PRK09107 61 AGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALM--DSIPLVCITGQVPTHLIGS-----------------DAFQ 121 (595)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHHHhh--cCCCEEEEEcCCChhhcCC-----------------CCCc
Confidence 56677888777776666654 34455557899999987 8999988886443221110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+--...+|++++++...+.+|++. +||+.|+|..|-
T Consensus 122 ~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 122 ECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred ccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 4688888888877889999999999888887652 699999998774
No 338
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=86.25 E-value=2.2 Score=51.56 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=74.8
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++-= -|+...+..+.+|.. .+.|+++|.-.-.....-+ +..+
T Consensus 50 A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A~~--~~~Pvl~i~g~~~~~~~~~-----------------~~~q 110 (548)
T PRK08978 50 AAMAAIGYARATGKVGVCIATSGPGATNLITGLADALL--DSVPVVAITGQVSSPLIGT-----------------DAFQ 110 (548)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CCCc
Confidence 6678888888888888877632 234446789999987 8999988875433221110 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+=....+|++++++...+++|++ .+||+.|||..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 111 EIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 456677777776778899999998888888764 3589999998763
No 339
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=86.22 E-value=1.7 Score=35.48 Aligned_cols=19 Identities=26% Similarity=0.823 Sum_probs=11.5
Q ss_pred CCceEEEeCCCCCChhhHH
Q 041113 937 QDNILLFLHGFLGTGEEWI 955 (983)
Q Consensus 937 ~~~~lv~lHG~~~~~~~w~ 955 (983)
.+|||+|.||+.+|+..|-
T Consensus 42 ~k~pVll~HGL~~ss~~wv 60 (63)
T PF04083_consen 42 KKPPVLLQHGLLQSSDDWV 60 (63)
T ss_dssp T--EEEEE--TT--GGGGC
T ss_pred CCCcEEEECCcccChHHHH
Confidence 4799999999999999993
No 340
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.14 E-value=2.3 Score=51.60 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=73.7
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++. =-|+.-.+..|.+|.. .+.|+++|.-.-......+ ...+
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~q 123 (564)
T PRK08155 63 AGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARL--DSIPLVCITGQVPASMIGT-----------------DAFQ 123 (564)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEeccCCcccccC-----------------CCcc
Confidence 567788888887888777652 3334446889999887 8999988875333221100 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....++++++++...+++|+. .+||+.|||..|
T Consensus 124 ~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 124 EVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred ccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 467777888877788899999998888887763 259999999865
No 341
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=86.09 E-value=1.5 Score=48.02 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=48.9
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
..+.++|++|+||+++.-.....+.. ...+.++|.|+.++...+.. .++.|.+|+.++|..|.+.+.
T Consensus 210 ~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~--~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 210 AALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL--LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc--eeEEEeCCHHHHHHHHHHHhC
Confidence 35678999999999986544333322 12344788899988766543 488999999999999987664
No 342
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=86.06 E-value=9.6 Score=41.38 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=84.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. | .+-.+-.+.
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 149 (286)
T PRK12738 75 MPLALHLDHHESLD----DIRRKVHAGVRSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA 149 (286)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCeEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Confidence 45544454444554 4555667899999998654 46778887777765532 1 110111122
Q ss_pred CC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+. -| ++++|.+|.++..- +|. |-..|--+++-++++++.+++|+.+.=.-.... +.++..++.
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~----e~~~kai~~ 224 (286)
T PRK12738 150 ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL-YSKTPKIDFQRLAEIREVVDVPLVLHGASDVPD----EFVRRTIEL 224 (286)
T ss_pred chhcCCCHHHHHHHHHHhCCCEEEeccCcccCC-CCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHHc
Confidence 11 25 89999999875421 122 334554479999999999999998876544433 368888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 225 GI~KiNi~T~l 235 (286)
T PRK12738 225 GVTKVNVATEL 235 (286)
T ss_pred CCeEEEeCcHH
Confidence 87667876544
No 343
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.03 E-value=2.8 Score=50.97 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=77.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++-+|++ ---|+.-.+..+.+|.. .+.|+++|.-.=.....- ....+
T Consensus 54 A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A~~--~~~Pvl~i~G~~~~~~~~-----------------~~~~q 114 (574)
T PRK07979 54 AVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYM--DSIPLVVLSGQVATSLIG-----------------YDAFQ 114 (574)
T ss_pred HHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHHhh--cCCCEEEEECCCChhccC-----------------CCCCc
Confidence 56788888887776766655 23345557899999987 899998887543322110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+=....+|++++++...|++|+. .+||+.|++..|-
T Consensus 115 ~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 115 ECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred eecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 468888999988889999999999999988874 3699999998764
No 344
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=86.02 E-value=8.4 Score=43.58 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeec-----C------CCChHHHHHHHhhcCC
Q 041113 683 DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE-----P------VQNEEDIIKYCEESGL 751 (983)
Q Consensus 683 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe-----P------~~~~~~~~~l~~~~~i 751 (983)
+++.-.++|+++++. + +.+.+-. +..++.++++.+.+.++.+|.= + -.++.++.++.++.++
T Consensus 116 ~p~l~~~iv~~~~~~-~--V~v~vr~----~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 116 KPELITERIAEIRDA-G--VIVAVSL----SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CHHHHHHHHHHHHhC-e--EEEEEec----CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCC
Confidence 555567888999885 3 4443332 3455677888888888888773 1 1147778888888899
Q ss_pred cEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC---------cC-CHHHH---HHHHHHHHHc-------CCcEEeC
Q 041113 752 PVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV---------IG-GFENA---GLIARWAQRH-------GKMAVVS 811 (983)
Q Consensus 752 pIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~---------~G-Gl~~~---~~~~~~A~~~-------gi~~~~~ 811 (983)
||..+. +.+.. ....+.+.|+|.|.+-..- .| |+... .+.++.++++ +++++..
T Consensus 189 pVIaG~-V~t~e-----~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd 262 (368)
T PRK08649 189 PVIVGG-CVTYT-----TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD 262 (368)
T ss_pred CEEEeC-CCCHH-----HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence 998844 55543 3555667899997553211 11 22222 2333333333 6898888
Q ss_pred CCCchHHHHHHHHHHHh
Q 041113 812 AAFESGLGLSAYIIFSS 828 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa 828 (983)
+.+.++-..+.++.+.|
T Consensus 263 GGI~~~~diakAlalGA 279 (368)
T PRK08649 263 GGIGTSGDIAKAIACGA 279 (368)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 88877777776665544
No 345
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=85.76 E-value=2.7 Score=45.94 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=73.0
Q ss_pred EEEEcc-CCCh-hHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhhccCccccccCCCCEEEEe
Q 041113 90 LLLVGA-VHNE-DEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQI 167 (983)
Q Consensus 90 vIl~G~-g~~~-~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~i 167 (983)
+|+.|+ |..+ +..+.+.+||+.||+-|-.+-. -+ -.|.+|.+|- +|..|. .-.+||-|++
T Consensus 197 iVVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp-~v----d~gw~p~d~Q----VGqTGk---------~V~P~LYIA~ 258 (313)
T COG2025 197 IVVSGGRGLGSKENFKLLEELADVLGAAVGASRP-AV----DAGWMPNDRQ----VGQTGK---------TVAPKLYIAL 258 (313)
T ss_pred EEEEcCcccCChhhhHHHHHHHHHhCceeeccHH-HH----hcCCCCccce----ecCCCc---------EecccEEEEE
Confidence 555555 4443 3345789999999999966442 11 1366666653 454442 2368999999
Q ss_pred CCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhccC
Q 041113 168 GSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQV 224 (983)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 224 (983)
|-+=--.++.+. ...+.+|-|+.|++.- -+..+|..|++|...++.+|.+.+.
T Consensus 259 GISGAiQHlaGm---~~Sk~IVAINkD~nAP-IF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 259 GISGAIQHLAGM---KDSKVIVAINKDPNAP-IFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred ecccHHHHHhhc---ccCcEEEEEcCCCCCC-ccccCCeeeeeeHHHHHHHHHHHHh
Confidence 976322222221 1124578899988643 2456899999999999999998764
No 346
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=85.70 E-value=3.1 Score=50.98 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=75.2
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+...+++.+|++ .--|+...++.|.+|.. .+.|+++|.-+=....+-+ ...+
T Consensus 72 Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~A~~--d~~Pvl~i~G~~~~~~~~~-----------------~~~Q 132 (616)
T PRK07418 72 AAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQM--DSVPMVVITGQVPRPAIGT-----------------DAFQ 132 (616)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHh--cCCCEEEEecCCCccccCC-----------------CCcc
Confidence 56778888777777877765 23345557899999987 8999988886433211100 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|-..+.+.+--...+|++++++...+.+|+. .+||+.|++..|-
T Consensus 133 e~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 133 ETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred cccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 467777888877778899999999888888764 2599999998663
No 347
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.59 E-value=2.9 Score=50.90 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=74.0
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|+.. .+..|.+|.. .++|+++|.-.=..... .....
T Consensus 61 A~~~Adgyar~tg~~gv~~~t~GpG~~N-~~~gl~~A~~--~~~Pvl~I~G~~~~~~~-----------------~~~~~ 120 (578)
T PRK06112 61 GGAMADGYARVSGKVAVVTAQNGPAATL-LVAPLAEALK--ASVPIVALVQDVNRDQT-----------------DRNAF 120 (578)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCcHHH-HHHHHHHHhh--cCCCEEEEecCCccccC-----------------CCCCc
Confidence 55677788887788888877 554443 3688888887 89999888854221100 00112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|-..+.+.+-....+|++++++...+++|+. .+||+.|+|..|
T Consensus 121 Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 121 QELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred cccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 3467788888888888999999988887777653 258999999876
No 348
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.52 E-value=9.4 Score=41.39 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=86.4
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CC------------CcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GH------------RIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~------------~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.+.++.||+.+-+.-.. .+.++.++..+++.+.. |- +-.+..+.
T Consensus 73 VPValHLDHg~~~e----~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~ 147 (282)
T TIGR01858 73 MPLALHLDHHESLD----DIRQKVHAGVRSAMIDGSH-FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDE 147 (282)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCcccc
Confidence 45544444444544 4666778899999998655 46788888777776532 11 11111122
Q ss_pred CC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+. .| ++++|.+|.++..- +|+ |-.+|--+++-++++++.+++|+.+.=.-.... +++++.+..
T Consensus 148 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~----e~~~~ai~~ 222 (282)
T TIGR01858 148 EDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL-YKKTPKLDFDRLAEIREVVDVPLVLHGASDVPD----EDVRRTIEL 222 (282)
T ss_pred chhccCCHHHHHHHHHHHCcCEEecccCccccC-cCCCCccCHHHHHHHHHHhCCCeEEecCCCCCH----HHHHHHHHc
Confidence 22 25 78999999875421 222 445664479999999999999998876544433 468888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 223 Gi~KiNi~T~l 233 (282)
T TIGR01858 223 GICKVNVATEL 233 (282)
T ss_pred CCeEEEeCcHH
Confidence 88777877654
No 349
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=85.38 E-value=3.4 Score=40.74 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=66.7
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN 407 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (983)
+..+|-|++.+.. +|++++.=-++...+..|.++.. .+.|+++|+-+-...+.-.. . .....
T Consensus 53 A~~~A~g~~r~~~-~v~~~~~gpG~~n~~~~l~~a~~--~~~P~v~i~g~~~~~~~~~~------------~---~~~~~ 114 (160)
T cd07034 53 AAEAAIGASAAGA-RAMTATSGPGLNLMAEALYLAAG--AELPLVIVVAQRPGPSTGLP------------K---PDQSD 114 (160)
T ss_pred HHHHHHHHHhhCC-cEEEeeCcchHHHHHHHHHHHHh--CCCCEEEEEeeCCCCCCCCC------------C---cCcHH
Confidence 6777888877643 46555555566678899999987 78999999877554322100 0 00012
Q ss_pred CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc----cCCCEEEEE
Q 041113 408 ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH----LGTDRVIEV 448 (983)
Q Consensus 408 ~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~----~~~p~lIeV 448 (983)
+|...+.+. .....++++++|+.+.+++|+. .++|++|-+
T Consensus 115 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 115 LMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 344445544 4667789999998888887753 357888754
No 350
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=85.32 E-value=3.3 Score=50.19 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=74.3
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |=| +...+..|.+|-. .+.|+++|.-.=.....- ....
T Consensus 58 A~~~Adgyar~tg~~gv~~~t~GpG-~~N~~~gi~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~ 117 (557)
T PRK08199 58 AAMMAEAYGKLTGRPGICFVTRGPG-ATNASIGVHTAFQ--DSTPMILFVGQVARDFRE-----------------REAF 117 (557)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcc-HHHHHHHHHHHhh--cCCCEEEEecCCccccCC-----------------CCcc
Confidence 66788888888778888876 444 4446789999987 899998887432211000 0112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|...+.+.+=-...+|++++++...+.+|+. .+||+.|++..|
T Consensus 118 q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 118 QEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred cccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 3467778888877788899999998888888764 258999999865
No 351
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=85.30 E-value=7.1 Score=41.88 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=84.9
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCC------------CCC---HHHHHHHHhhccc
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANR------------NWT---YQEALEFGFLIKD 726 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~------------~~~---~~~a~~~~~~l~~ 726 (983)
++++.+.|...+ -+|. ..-.+.+.+.++.+.+| ..+.+.+|... +|. .....++++.+++
T Consensus 89 ~~~~l~~Ga~~V--iigt--~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (253)
T PRK02083 89 ARRLLRAGADKV--SINS--AAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEE 164 (253)
T ss_pred HHHHHHcCCCEE--EECh--hHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHH
Confidence 444455676664 4564 34457788999999997 45777889643 131 1134555566666
Q ss_pred CCCce-----ee-cCCC---ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC-CCceEEEEcCC-CcCCHHHHH
Q 041113 727 CDLQY-----IE-EPVQ---NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH-PGIVAIVIKPS-VIGGFENAG 795 (983)
Q Consensus 727 ~~i~~-----iE-eP~~---~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~-~~~~~i~~k~~-~~GGl~~~~ 795 (983)
.++.. +. +... +++-++++++.+++||.+.=-+.+..| +..+.+ .|++.+.+--. ..|. ....
T Consensus 165 ~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d-----~~~~~~~~G~~gvivg~al~~~~-~~~~ 238 (253)
T PRK02083 165 LGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEH-----FVEAFTEGGADAALAASIFHFGE-ITIG 238 (253)
T ss_pred cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHH-----HHHHHHhCCccEEeEhHHHHcCC-CCHH
Confidence 66532 22 2332 577788998888999877766666543 444554 48877665333 3343 4466
Q ss_pred HHHHHHHHcCCcE
Q 041113 796 LIARWAQRHGKMA 808 (983)
Q Consensus 796 ~~~~~A~~~gi~~ 808 (983)
++.+.+++.|+.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7778888888873
No 352
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=85.17 E-value=15 Score=40.14 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=82.0
Q ss_pred eeEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEe-------ccCC-----CChHHHHHHHHHHHHHc-CCCcEE--EE
Q 041113 643 SIKICALID-SNKSPVEVASIATTLVEEGFTAIKLK-------VARR-----ADPIKDAEVIQEVRKKV-GHRIEL--RV 706 (983)
Q Consensus 643 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiK-------ig~~-----~~~~~d~~~v~~vr~~~-g~~~~l--~v 706 (983)
.+|+.+-.. +.+++..+.+.++++.+.|...+-|. .|.. -+.++=+++|++++++- ++++-| |.
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 466655442 23488999999999999999888772 2321 13445578888888775 455554 45
Q ss_pred EcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEeC
Q 041113 707 DANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVALD 756 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~d 756 (983)
|+-.....++|++.++...+. +..|+|-|-. .++++++.++.++|+...
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~-~~~i~~~~~~~~~Pl~~n 208 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMTE-LEMYRRFADAVKVPILAN 208 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCCC-HHHHHHHHHhcCCCEEEE
Confidence 887666799999999988775 5779988665 999999999988898553
No 353
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=85.17 E-value=12 Score=38.14 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccC--CCC--hHHHHHHHHHHHHHcCCCcEEEEEcCCCC--CHHHHHHHHhhcccCCC
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVAR--RAD--PIKDAEVIQEVRKKVGHRIELRVDANRNW--TYQEALEFGFLIKDCDL 729 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~--~~~--~~~d~~~v~~vr~~~g~~~~l~vDaN~~~--~~~~a~~~~~~l~~~~i 729 (983)
.++..+.++++.+.|...+.+-... ..+ .+.=.+.++++++..+.++.+++..+-.+ +.++..+.++.++..++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 6788889999999999999986432 011 23446778888887644688888776443 67777777776777788
Q ss_pred ceeecCCC------ChHHHHHHHhhc--CCcE
Q 041113 730 QYIEEPVQ------NEEDIIKYCEES--GLPV 753 (983)
Q Consensus 730 ~~iEeP~~------~~~~~~~l~~~~--~ipI 753 (983)
.++-.... +.+.++++++.. ++|+
T Consensus 144 ~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v 175 (201)
T cd00945 144 DFIKTSTGFGGGGATVEDVKLMKEAVGGRVGV 175 (201)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhcccCCcE
Confidence 88877665 677778887665 4455
No 354
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=84.87 E-value=6 Score=38.96 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=63.0
Q ss_pred hHHHHHhhhhccCceEEEEEccchhh-hccchHH-HHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFL-HDTNGLA-ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~-~~~~eL~-Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
-++.|.|.++.--++++... ..|. .....|- .++. .++|++++ +..+|++.-.. -.+.
T Consensus 51 ~vg~A~GlA~~G~~pi~~~~--~~f~~ra~dqi~~~~a~--~~~pv~~~-~~~~g~~~~~~---------------G~tH 110 (156)
T cd07033 51 MVGIAAGLALHGLKPFVSTF--SFFLQRAYDQIRHDVAL--QNLPVKFV-GTHAGISVGED---------------GPTH 110 (156)
T ss_pred HHHHHHHHHHCCCeEEEEEC--HHHHHHHHHHHHHHHhc--cCCCeEEE-EECCcEecCCC---------------Cccc
Confidence 46777787765445565555 3443 3445565 4454 78998664 44554433100 0112
Q ss_pred CCCCHHHHHHHc-CCceeeeCCHHHHHHHHHhhhccCCCEEEEE
Q 041113 406 HNISIQNLCLAH-GLNHVQVKTKVELEEALSMSQHLGTDRVIEV 448 (983)
Q Consensus 406 ~~~df~~la~a~-G~~~~~v~~~~eL~~aL~~a~~~~~p~lIeV 448 (983)
+.++...+-+.+ |++-....+.+|++..++.+++.++|++|-.
T Consensus 111 ~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 111 QGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred chHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 233444444444 6777888999999999999998889998864
No 355
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=84.83 E-value=1.8 Score=49.03 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHhc---CCcE--EeccccCccchhhhhhhhhhcccccc--cc
Q 041113 73 YCQMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARHI---RWPV--VADILSGLRLRKLLASFLETEQNILF--LD 144 (983)
Q Consensus 73 ~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~l---~~Pv--~~t~~sg~~~~~~kg~~~~~hp~~~~--~g 144 (983)
+...++++++|..|+|.+|+-|+|.. .++..++++|++.| |+-| .-.|-+ |-.|. |=+.+. .+
T Consensus 293 ~~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA--------GRMPG-HMNVLLAEA~ 363 (462)
T PRK09444 293 ETTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA--------GRLPG-HMNVLLAEAK 363 (462)
T ss_pred ecCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc--------ccCCC-cceeEEeecC
Confidence 34677889999999999999999854 44555666666554 4433 111211 22221 100000 00
Q ss_pred -chhh-hccCccccccCCCCEEEEeCCccccHHHHHHH-----------HhcCCceEEEEcCCCC--C--C-CC--CCCe
Q 041113 145 -HLDH-ALLSESVKDWIQFDVIIQIGSRITSKRISQMI-----------EECFPCTYILVDNHPC--R--H-DP--SHSV 204 (983)
Q Consensus 145 -~~g~-~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~-----------~~~~~~~~i~id~d~~--~--~-~~--~~~~ 204 (983)
-|+. .-.++.|..+.+.|++|++|..-.-.+..... +-++.+++|.+..+-. . + ++ +.+.
T Consensus 364 VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~n 443 (462)
T PRK09444 364 VPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKEN 443 (462)
T ss_pred CCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecCC
Confidence 0111 11234555678999999999864322211100 0111233444432211 0 0 01 2234
Q ss_pred eEEEEcCHHHHHHHHHhc
Q 041113 205 THRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 205 ~~~i~~d~~~~l~~L~~~ 222 (983)
+.-+.+|++..+++|...
T Consensus 444 t~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 444 TQMLFGDAKASVDAILKA 461 (462)
T ss_pred ceEEeccHHHHHHHHHHh
Confidence 556789999999998653
No 356
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.82 E-value=11 Score=41.46 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHH
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRA--------------DPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a 717 (983)
...+++.+++.++-....+ ..|-+-.|.+. +++---+.|.++|..++..+.+-+=-+ =+.++.
T Consensus 81 ~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~--~d~~kT 157 (358)
T KOG2335|consen 81 GGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF--VDLEKT 157 (358)
T ss_pred cCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--CcHHHH
Confidence 4568888888777665667 88888888641 233334678888888865543332222 467888
Q ss_pred HHHHhhcccCCCcee---------e---cCCCChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEE-
Q 041113 718 LEFGFLIKDCDLQYI---------E---EPVQNEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI- 783 (983)
Q Consensus 718 ~~~~~~l~~~~i~~i---------E---eP~~~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~- 783 (983)
+++++.+++.+..|| + -|..|++.++.+++..+ +|+.+.=++.++.| ...-+...|+|.|..
T Consensus 158 vd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d----~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 158 VDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLED----VERCLKYTGADGVMSA 233 (358)
T ss_pred HHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHH----HHHHHHHhCCceEEec
Confidence 899999999887766 2 22226999999999988 99999999998865 122223356666543
Q ss_pred -----cCCCc----CC---HHHHHHHHHHHHHcCC
Q 041113 784 -----KPSVI----GG---FENAGLIARWAQRHGK 806 (983)
Q Consensus 784 -----k~~~~----GG---l~~~~~~~~~A~~~gi 806 (983)
.|..+ ++ ..-..+...+|.+++-
T Consensus 234 rglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 234 RGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred chhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 22222 12 2234566777888874
No 357
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=84.74 E-value=3.3 Score=50.78 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=76.2
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+...+..|..|.. .++|+++|.-.-....+-+ ...+
T Consensus 81 A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~--~~~PllvI~G~~~~~~~~~-----------------~~~q 141 (612)
T PRK07789 81 AGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANM--DSVPVVAITGQVGRGLIGT-----------------DAFQ 141 (612)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CcCc
Confidence 67788888888777766654 33344446789999987 7999988886433221110 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|++++++...+++|+. ..||+.|++..|-
T Consensus 142 ~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 142 EADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred ccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 468888888888888999999998888888764 2589999998773
No 358
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=84.10 E-value=2.5 Score=44.83 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=45.7
Q ss_pred ccCCCCEEEEeCCccccHHHHHHHH--hcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 157 DWIQFDVIIQIGSRITSKRISQMIE--ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 157 ~~~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
.+.+||++|+||+++.-........ .....+++.|+.++...+. ..+..+.+++..++.+|.+.
T Consensus 169 ~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~--~~~~~i~g~~~~~l~~l~~~ 234 (242)
T PTZ00408 169 VMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS--QFDESIYGKASVIVPAWVDR 234 (242)
T ss_pred HHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc--cCCEEEECCHHHHHHHHHHH
Confidence 4678999999999986555444332 2223467889998866553 34677889999999988654
No 359
>PRK11269 glyoxylate carboligase; Provisional
Probab=83.75 E-value=4.3 Score=49.56 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=77.0
Q ss_pred hHHHHHhhhhcc-CceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc
Q 041113 328 LLSTAIGFAVGC-NKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT 404 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~ 404 (983)
+.-+|-|.+.++ +++.+|++ |=|... .+..+.+|.. .+.|+++|.-.-.....-+ ..
T Consensus 54 A~~mAdGYar~t~g~~gv~~~t~GPG~~N-~l~gl~~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~ 113 (591)
T PRK11269 54 ASHMAEGYTRATAGNIGVCIGTSGPAGTD-MITGLYSASA--DSIPILCITGQAPRARLHK-----------------ED 113 (591)
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCcHHH-HHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------Cc
Confidence 667888988888 78888876 444443 5788998887 8999988876543321110 11
Q ss_pred CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 405 THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 405 ~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+.+|...+.+.+=....+|++++++...+++|++ .+||+.|++..|-
T Consensus 114 ~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 114 FQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred ccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 23468888888888888999999999888888764 2589999999773
No 360
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=83.58 E-value=23 Score=38.56 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=81.0
Q ss_pred eeEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEe-------ccCC-----CChHHHHHHHHHHHHHcC-CCcEE--EE
Q 041113 643 SIKICALID-SNKSPVEVASIATTLVEEGFTAIKLK-------VARR-----ADPIKDAEVIQEVRKKVG-HRIEL--RV 706 (983)
Q Consensus 643 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiK-------ig~~-----~~~~~d~~~v~~vr~~~g-~~~~l--~v 706 (983)
.+|+.+-.. +.+.+..+.+.++++.+.|...+-|. .|.. -+.++=+++|++++++.. +++-| |.
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 456654432 23468899999999999999888773 2221 134455788999988753 34433 46
Q ss_pred EcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcEEe
Q 041113 707 DANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPVAL 755 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipIa~ 755 (983)
|+-.....++|++.++...+. +..|+|-|.. .++++++.++.++|+..
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~-~e~i~~~~~~i~~Pl~~ 202 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALTS-LEEFRQFAKAVKVPLLA 202 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCCC-HHHHHHHHHhcCCCEEE
Confidence 888777899999999888765 5779988765 99999999998888844
No 361
>PLN02470 acetolactate synthase
Probab=83.57 E-value=3.8 Score=49.90 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=75.5
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=|... .+..+.+|-. .+.|+++|.-.-....+-+ ...
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GPG~~N-~l~gia~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~~ 122 (585)
T PLN02470 63 EVFAAEGYAKASGKVGVCIATSGPGATN-LVTGLADALL--DSVPLVAITGQVPRRMIGT-----------------DAF 122 (585)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHH-HHHHHHHHHh--cCCcEEEEecCCChhhcCC-----------------CcC
Confidence 56678888877777777755 444444 5789999887 8999988875443221110 112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+..|...+.+.+-....+|++++++.+.+++|+. .+||+.||+..|
T Consensus 123 q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 123 QETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred cccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 3467788888888889999999999998888864 269999999876
No 362
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=83.53 E-value=1.7 Score=49.86 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=41.0
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChhh-------------HHHHHH---Hhh-CCCEEEEEcCCCCCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGEE-------------WIPIMK---AVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~~-------------w~~~~~---~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
+++.|...|+-+....+.||+.|+++++++. |..++- .|. ++|.||++|..|-|.|+.
T Consensus 41 ~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~ 115 (389)
T PRK06765 41 VQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKD 115 (389)
T ss_pred ceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCC
Confidence 5566677776332235789999999997642 777763 353 469999999999876543
No 363
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=83.47 E-value=3.1 Score=48.55 Aligned_cols=106 Identities=12% Similarity=0.002 Sum_probs=70.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .-.|..-.+..|.++.. .+.|+++|.-.-.....- .+..+
T Consensus 50 A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~q 110 (432)
T TIGR00173 50 AGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIEASY--SGVPLIVLTADRPPELRG-----------------CGANQ 110 (432)
T ss_pred HHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHHhcc--cCCcEEEEeCCCCHHHhC-----------------CCCCc
Confidence 45678888777777777655 34455667899999887 799998887543321110 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHH----------HHHHHHhhhc-cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVE----------LEEALSMSQH-LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~e----------L~~aL~~a~~-~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....+|+++++ +.+|++.+.. .+||+.|+|..|-
T Consensus 111 ~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 111 TIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred ccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 46777788877777888887665 4455555544 4699999998764
No 364
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=83.41 E-value=9.3 Score=39.45 Aligned_cols=100 Identities=19% Similarity=0.093 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC-----ChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 703 ELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ-----NEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 703 ~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~-----~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
.+.+| ..+.++|.++++.+ +.++.|||-..+ ..+.++.+++.. +..|..|=.+.+... ..+..+.+.
T Consensus 3 ~~alD---~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~---~~~~~~~~~ 75 (206)
T TIGR03128 3 QLALD---LLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE---YEAEQAFAA 75 (206)
T ss_pred EEEec---CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH---HHHHHHHHc
Confidence 34454 46789999999999 678999999643 356677887764 566777665554321 135666778
Q ss_pred CceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 777 GIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 777 ~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
|+|++.+...- +.....++.+.|+++|+++++.
T Consensus 76 Gad~i~vh~~~--~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 76 GADIVTVLGVA--DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred CCCEEEEeccC--CHHHHHHHHHHHHHcCCEEEEE
Confidence 99988766543 2234578899999999998765
No 365
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=83.41 E-value=4.3 Score=49.29 Aligned_cols=107 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..|.+|.. .+.|+++|.-.-... ... . . ....+
T Consensus 59 A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~--~~~Pvl~I~G~~~~~-~~~-~-----------~--~~~~q 121 (569)
T PRK09259 59 AGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATT--NCFPMIMISGSSERE-IVD-L-----------Q--QGDYE 121 (569)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHh--cCCCEEEEEccCCcc-ccc-c-----------c--CCCcc
Confidence 55677777777677777765 45566667899999987 899999998653311 000 0 0 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|...+.+.+-....+|++++++...+.+|+. .+||+.|++..|
T Consensus 122 ~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 122 ELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred ccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 568888899888889999999999888888763 368999999876
No 366
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=83.21 E-value=4.7 Score=49.10 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=73.8
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..|.+|.. .+.|+++|.-.=.....- ....+
T Consensus 51 A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A~~--~~~Pvl~I~g~~~~~~~~-----------------~~~~Q 111 (579)
T TIGR03457 51 AGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYW--AHTPVVIVTPEAGTKTIG-----------------LGGFQ 111 (579)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHHhh--cCCCEEEEeCCCccccCC-----------------CCCCc
Confidence 55677777777677777755 34455557799999987 899998885322211000 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
.+|...+.+.+-....+|++++++...+++|+ ..+||+.||+..|-
T Consensus 112 ~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 112 EADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred ccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 46788888888888999999998888777765 34689999999764
No 367
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=83.16 E-value=22 Score=38.93 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=71.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vDa 708 (983)
||+.-.++-..+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. | ..-.+..+.
T Consensus 75 VPValHLDHg~~~e----~i~~ai~~GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 75 IPVALHLDHGTTFE----SCEKAVKAGFTSVMIDASH-HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CeEEEECCCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 66666665555554 4566778899999998655 46788888777775532 1 111111222
Q ss_pred CCC-C-CHHHHHHHHhhccc----------CCCcee--ecCCCChHHHHHHHhhcCCcEEeCCCcc
Q 041113 709 NRN-W-TYQEALEFGFLIKD----------CDLQYI--EEPVQNEEDIIKYCEESGLPVALDETID 760 (983)
Q Consensus 709 N~~-~-~~~~a~~~~~~l~~----------~~i~~i--EeP~~~~~~~~~l~~~~~ipIa~dEs~~ 760 (983)
+.. | ++++|.+|.++..- +|. |- .+|--+++-++++++.+++|+.+.=.-.
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~-Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSG 214 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA-FKFKGEPKLDFERLQEVKRLTNIPLVLHGASA 214 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccc-cCCCCCCccCHHHHHHHHHHhCCCEEEeCCCC
Confidence 222 5 79999999986421 222 32 5665579999999999999998865533
No 368
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.15 E-value=16 Score=39.76 Aligned_cols=134 Identities=17% Similarity=0.202 Sum_probs=86.8
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---C------------CCcEEEEEc
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---G------------HRIELRVDA 708 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g------------~~~~l~vDa 708 (983)
||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. | .+-.+..|.
T Consensus 75 VPValHLDH~~~~e----~i~~ai~~GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~ 149 (284)
T PRK12737 75 IPLALHLDHHEDLD----DIKKKVRAGIRSVMIDGSH-LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDE 149 (284)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCeEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccc
Confidence 45544454444444 5667778899999998655 46778887776665432 1 111122233
Q ss_pred CCC-C-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NRN-W-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~~-~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
+.. | ++++|.+|.++..- +|+ |-.+|--|++-++++++.+++|+.+.=.-.... +.+++.++.
T Consensus 150 ~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~----e~~~kai~~ 224 (284)
T PRK12737 150 KDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL-YKGEPKLDFERLAEIREKVSIPLVLHGASGVPD----EDVKKAISL 224 (284)
T ss_pred ccccCCCHHHHHHHHHHhCCCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHHC
Confidence 332 5 89999999885422 232 445664479999999999999998876544432 468888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=||+....
T Consensus 225 Gi~KiNi~T~l 235 (284)
T PRK12737 225 GICKVNVATEL 235 (284)
T ss_pred CCeEEEeCcHH
Confidence 88777876543
No 369
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=82.91 E-value=6.6 Score=41.76 Aligned_cols=113 Identities=14% Similarity=0.272 Sum_probs=74.6
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCC------CCC--HHHHHHHHhhcccCCCcee-
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR------NWT--YQEALEFGFLIKDCDLQYI- 732 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~------~~~--~~~a~~~~~~l~~~~i~~i- 732 (983)
.++++.+.|... +-+|. ..-.|.+.++.+-+.++..+.+.+|... +|+ ..+..++++.+++.++.++
T Consensus 89 dv~~~l~~Ga~k--vviGs--~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ii 164 (241)
T PRK14024 89 SLEAALATGCAR--VNIGT--AALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYV 164 (241)
T ss_pred HHHHHHHCCCCE--EEECc--hHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEE
Confidence 456667778874 44554 4456778888888888777777778732 453 2345677777777765432
Q ss_pred ------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhh---cCCCceEEEE
Q 041113 733 ------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKY---AHPGIVAIVI 783 (983)
Q Consensus 733 ------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~---~~~~~~~i~~ 783 (983)
++-.. +++.++++++.+++||.+.=-+.+..| +..+ ...|++.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D-----~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDD-----LRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHHHhhhccCCccEEEE
Confidence 22222 578889999989999888777777653 4333 2357877654
No 370
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=82.82 E-value=5.5 Score=48.38 Aligned_cols=106 Identities=16% Similarity=0.055 Sum_probs=73.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.+|++ .--|+...++.+.++-. .+.|+++|.-.-.....- ....+
T Consensus 50 A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A~~--~~~Pvl~I~G~~~~~~~~-----------------~~~~q 110 (575)
T TIGR02720 50 GALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDAKE--DHVPVLALVGQVPTTGMN-----------------MDTFQ 110 (575)
T ss_pred HHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHHhh--cCCCEEEEecCCccccCC-----------------CCCcc
Confidence 45677777766677777765 34455557899999987 899998888644432111 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhh----hccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMS----QHLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a----~~~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+-....+|.+++++...+.+| ....||+.|++..|-
T Consensus 111 ~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 111 EMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred eechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 4577788888887888999888776666554 446799999999773
No 371
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=82.58 E-value=5 Score=48.95 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=74.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+...+..+.+|.+ .+.|+++|.-.=... .+ .. ...+
T Consensus 55 A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~--~~~Pvl~I~g~~~~~----~~---------~~----~~~q 115 (588)
T PRK07525 55 AGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATAYW--AHTPVVLVTPQAGTK----TI---------GQ----GGFQ 115 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHhh--cCCCEEEEeCCCCcc----cC---------CC----CCCc
Confidence 56778888777777776665 23455557899999987 899998887221111 00 00 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
..|...+.+.+-....++++++++...|++|+ ...||+.|||..|-
T Consensus 116 ~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 116 EAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred ccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 45778888888778889999988888877765 34789999998763
No 372
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.51 E-value=5.8 Score=46.01 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=64.6
Q ss_pred cccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhh
Q 041113 69 KSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDH 148 (983)
Q Consensus 69 ~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~ 148 (983)
+...+++++.+++.|+++++|+++.|..........+.+|++.+|..+- +.. . ....+..+.+. ..+.
T Consensus 53 ~isWdeAl~~ia~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~------~~~~~~~~~~~----~~g~ 120 (415)
T cd02761 53 PVSLEEAIEKAAEILKEAKRPLFYGLGTTVCEAQRAGIELAEKLGAIID-HAA-S------VCHGPNLLALQ----DSGW 120 (415)
T ss_pred CCCcHHHHHHHHHHHHhhcCCEEEEcccchHHHHHHHHHHHHHHCCCcc-ccc-c------ccccchHHHHH----hCCC
Confidence 3567889999999999999998874443322334577899999997432 111 1 11122222111 0010
Q ss_pred hccCcccccc-CCCCEEEEeCCccccHHHHHH------HHh------cCCceEEEEcCCCCCC
Q 041113 149 ALLSESVKDW-IQFDVIIQIGSRITSKRISQM------IEE------CFPCTYILVDNHPCRH 198 (983)
Q Consensus 149 ~~~~~~~~~~-~~aDlvl~iG~~~~~~~~~~~------~~~------~~~~~~i~id~d~~~~ 198 (983)
.. .....+ .++|+||++|+.+.......+ ... ....++|.||+.....
T Consensus 121 ~~--~~~~di~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 121 PT--TTLGEVKNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred cc--ccHHHHHhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 10 111234 479999999998765432211 011 0223688888766544
No 373
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=82.36 E-value=5 Score=42.22 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=35.3
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.+++++.||...+....-.+...|+. +++++++|..|+|.|+..
T Consensus 60 ~~~lly~hGNa~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~ 105 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSGK 105 (258)
T ss_pred ceEEEEcCCcccchHHHHHHHHHHhhcccceEEEEecccccccCCC
Confidence 47999999997777655555556666 699999999999999853
No 374
>PRK08266 hypothetical protein; Provisional
Probab=82.33 E-value=5.5 Score=48.07 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=74.4
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|.|.+.+++++.+|++ |= |+...+..+..|.. .+.|+++|.-.=..+.+-+ +. ...
T Consensus 55 A~~~A~gyar~tg~~~v~~~t~Gp-G~~N~~~gi~~A~~--~~~Pvl~i~g~~~~~~~~~-------------~~--~~~ 116 (542)
T PRK08266 55 AGYMAFGYARSTGRPGVCSVVPGP-GVLNAGAALLTAYG--CNSPVLCLTGQIPSALIGK-------------GR--GHL 116 (542)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCC-cHHHHHHHHHHHHh--hCCCEEEEecCCChhhccC-------------CC--Ccc
Confidence 56788888888777777765 44 44456789999887 8999988874321111100 00 001
Q ss_pred CC-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HN-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
+. +|...+.+.+-....+|++++++...+++|+. .+||+.||+..|
T Consensus 117 ~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 117 HEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred eecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 22 57888889888889999999998888887763 368999999876
No 375
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=82.31 E-value=3.4 Score=45.43 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=64.8
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCCh---HHHHHHHhh-----cCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQNE---EDIIKYCEE-----SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~~---~~~~~l~~~-----~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
+.+..++-+.+|++.|-+.+-=-+++. +.+.+++++ +++|+.+|=+..- +.....++. ++-+.+.
T Consensus 29 Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~------~lAl~a~~~-v~kiRIN 101 (359)
T PF04551_consen 29 DVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDY------RLALEAIEA-VDKIRIN 101 (359)
T ss_dssp -HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTC------HHHHHHHHC--SEEEE-
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCH------HHHHHHHHH-hCeEEEC
Confidence 455566666667777766666666643 445677778 9999999987442 123333444 8899999
Q ss_pred CCCc--------CC-HHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 785 PSVI--------GG-FENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 785 ~~~~--------GG-l~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
|+-+ |+ -....++++.|+++|+++-++-+.+|
T Consensus 102 PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GS 142 (359)
T PF04551_consen 102 PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGS 142 (359)
T ss_dssp TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGG
T ss_pred CCcccccccccccchHHHHHHHHHHHHHCCCCEEEeccccc
Confidence 9999 88 88999999999999999888776654
No 376
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=82.19 E-value=4.5 Score=48.96 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=74.9
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+..++++.++++ |=| +.-.+..+..|.. .+.|+++|.-.=.....- -...
T Consensus 51 A~~~Adgyar~tg~~gv~~~t~GpG-~~n~l~~i~~A~~--~~~Pvl~i~g~~~~~~~~-----------------~~~~ 110 (558)
T TIGR00118 51 AAHAADGYARASGKVGVVLVTSGPG-ATNLVTGIATAYM--DSIPMVVFTGQVPTSLIG-----------------SDAF 110 (558)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHHh--cCCCEEEEecCCCccccC-----------------CCCC
Confidence 56678888877777777666 444 4446789999887 899998888632221110 0112
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~ 451 (983)
+..|...+.+.+-....+|++++++...+.+|+.. +||+.|+|..|
T Consensus 111 q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 111 QEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred cccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 34678888998888999999999998888887642 58999999866
No 377
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=82.05 E-value=5.1 Score=48.82 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=74.3
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+..++++.+|++ |=| +...++.|.+|.. .+.|+++|.-.=..+.+-+ ...
T Consensus 63 A~~~Adgyar~tg~~gv~~~t~GPG-~~N~l~gl~~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~~ 122 (585)
T CHL00099 63 AAHAADGYARSTGKVGVCFATSGPG-ATNLVTGIATAQM--DSVPLLVITGQVGRAFIGT-----------------DAF 122 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCc-HHHHHHHHHHHhh--cCCCEEEEecCCCccccCC-----------------CCc
Confidence 56778888877777877765 444 4446799999987 8999988886433221110 011
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.+++|+. .+||+.|++..|-
T Consensus 123 q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 123 QEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred cccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 3356667777777778899999999998888763 3589999998763
No 378
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=81.57 E-value=2.8 Score=47.28 Aligned_cols=44 Identities=27% Similarity=0.507 Sum_probs=33.3
Q ss_pred CceEEEeCCCCCChhh-H-HHHHHH-hhCCCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-W-IPIMKA-VSGSARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w-~~~~~~-l~~~~~vi~~Dl~G~G~S~~~ 981 (983)
.|.||++||+.+++.. + +.++.. ..+.|+|+++..||+|.|.-.
T Consensus 125 ~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~Lt 171 (409)
T KOG1838|consen 125 DPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLT 171 (409)
T ss_pred CcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccC
Confidence 6999999999987764 3 233333 345699999999999988743
No 379
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.38 E-value=20 Score=38.89 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=80.7
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCcE--E---------EEEcC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRIE--L---------RVDAN 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~~--l---------~vDaN 709 (983)
||+.-.++.+.+.+ .+.++++.||+.+-+.-.. .+.++.++..+++.+.. |-.++ | ..+..
T Consensus 75 vPV~lHLDH~~~~e----~i~~Ai~~GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 75 VPVSLHLDHGKTFE----DVKQAVRAGFTSVMIDGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCEEEECcCCCCHH----HHHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 44444444344444 3445667899999996543 45677887777766532 21110 0 01111
Q ss_pred CCC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 710 RNW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
..+ ++++|.+|.++..- +|+ |-. |=-+++-++++++.+++|+.+.=.--... +.++..+..|+
T Consensus 150 ~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~-Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~----e~~~~ai~~Gi 223 (283)
T PRK07998 150 DCKTEPEKVKDFVERTGCDMLAVSIGNVHGL-EDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPP----EILRSFVNYKV 223 (283)
T ss_pred cccCCHHHHHHHHHHhCcCeeehhccccccC-CCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCH----HHHHHHHHcCC
Confidence 224 89999999886532 122 222 33378999999999999998865544332 36788888888
Q ss_pred eEEEEcCC
Q 041113 779 VAIVIKPS 786 (983)
Q Consensus 779 ~~i~~k~~ 786 (983)
.-+|+...
T Consensus 224 ~KiNi~Te 231 (283)
T PRK07998 224 AKVNIASD 231 (283)
T ss_pred cEEEECHH
Confidence 77787654
No 380
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=81.37 E-value=4.4 Score=49.15 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=75.7
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| +.-.++.|.++.. .+.|+++|.-.-....+-+ ...
T Consensus 60 A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~ 119 (566)
T PRK07282 60 ALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIADAMS--DSVPLLVFTGQVARAGIGK-----------------DAF 119 (566)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHhh--cCCCEEEEecccccccCCC-----------------CCc
Confidence 66778888777776766655 555 4446789999887 8999988886544332210 012
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhcc-----CCCEEEEEEcCc
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHL-----GTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~~-----~~p~lIeV~~~~ 452 (983)
+..|...+.+.+-....+|++++++.+.+.+|++. +||+.|++..|-
T Consensus 120 q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 120 QEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred cccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 34577788888888899999999998888887642 589999998764
No 381
>PRK12474 hypothetical protein; Provisional
Probab=81.30 E-value=6.7 Score=46.98 Aligned_cols=106 Identities=8% Similarity=0.054 Sum_probs=75.1
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|=|.+-+++++.+|++ .--|+.-.+..|.++.. .+.|+++|.-.......- . ...+
T Consensus 55 A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A~~--d~~Pvl~i~G~~~~~~~~-------------~----~~~q 115 (518)
T PRK12474 55 VTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNARR--AASPIVNIVGDHAVEHLQ-------------Y----DAPL 115 (518)
T ss_pred HHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHHhh--cCCCEEEEeccCchhhcC-------------C----CCcc
Confidence 55677777777677776654 34446667888888887 899999888643321000 0 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+++.+-....+|++++++...|++|+. ..||+.|++..|-
T Consensus 116 ~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 116 TSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred ccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 358888888887788899999999999988873 3589999998774
No 382
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=81.19 E-value=3.9 Score=45.98 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCCEEEEeccCC-------------------CChH----HHHHHHHHHHHHcCCCc--EEEEEcCCC
Q 041113 657 VEVASIATTLVEEGFTAIKLKVARR-------------------ADPI----KDAEVIQEVRKKVGHRI--ELRVDANRN 711 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~~~~KiKig~~-------------------~~~~----~d~~~v~~vr~~~g~~~--~l~vDaN~~ 711 (983)
++..+.++.+++.||..+-|+.+.. .+++ -=++.|++||+++|+++ -+++-+...
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 4566677778889999999998642 1221 12678999999999996 667766543
Q ss_pred ----CCHHHHHHHHhhcccCCCcee----------ecCCC------C----hHHHHHHHhhcCCcEEeCCCccCcCCChH
Q 041113 712 ----WTYQEALEFGFLIKDCDLQYI----------EEPVQ------N----EEDIIKYCEESGLPVALDETIDKFQKDPL 767 (983)
Q Consensus 712 ----~~~~~a~~~~~~l~~~~i~~i----------EeP~~------~----~~~~~~l~~~~~ipIa~dEs~~~~~~~~~ 767 (983)
++.++..++++.++..++.++ ..|.. . .+....+++..++||.+.-.+.+..
T Consensus 229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~---- 304 (341)
T PF00724_consen 229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPE---- 304 (341)
T ss_dssp STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHH----
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchh----
Confidence 456777666666655432222 22322 1 1233566777888988777666642
Q ss_pred HHHHhhcC-CCceEEEE
Q 041113 768 NMLEKYAH-PGIVAIVI 783 (983)
Q Consensus 768 ~~~~~~~~-~~~~~i~~ 783 (983)
....+++ ..+|.|-+
T Consensus 305 -~ae~~l~~g~~DlV~~ 320 (341)
T PF00724_consen 305 -QAEKALEEGKADLVAM 320 (341)
T ss_dssp -HHHHHHHTTSTSEEEE
T ss_pred -hhHHHHhcCCceEeec
Confidence 2334443 44677643
No 383
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=81.17 E-value=9.8 Score=43.62 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=65.6
Q ss_pred ccchhhHHHHHHHHhcCC--ceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh
Q 041113 70 SYTYCQMAEVLELVQGVN--KGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
....++++.+++.|++.+ +..++.|..........+.+|++.+|.+.+.... . ..... . ..+..+
T Consensus 69 isWdeAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~-~-------~~~~~---~--~~~~~~ 135 (386)
T cd02768 69 VSWEEALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRL-R-------QSDLP---A--DNRLRG 135 (386)
T ss_pred cCHHHHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhh-c-------cccCc---c--cccccc
Confidence 456789999999999887 6666666644433445788999999877554321 1 00000 0 001000
Q ss_pred hhccCccccccCCCCEEEEeCCccccHHH--HHHHHh-c-C-CceEEEEcCCCCCC
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSKRI--SQMIEE-C-F-PCTYILVDNHPCRH 198 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~~~--~~~~~~-~-~-~~~~i~id~d~~~~ 198 (983)
..........+.++|+||++|+.+.+... ...... . . ..++|.||......
T Consensus 136 ~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 136 NYLFNTSIAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred CcccCCCHHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 01111223456799999999998754332 222221 1 2 34788888766544
No 384
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.16 E-value=18 Score=39.26 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=87.2
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc--------------C-CCcEEEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV--------------G-HRIELRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~--------------g-~~~~l~vD 707 (983)
+||+.-.++-+.+.+ .+.++++.||+.+-+.-.. .+.++++++.+.+.+.. | .+-.+..+
T Consensus 74 ~VPValHLDH~~~~e----~i~~ai~~GftSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~ 148 (284)
T PRK12857 74 SVPVALHLDHGTDFE----QVMKCIRNGFTSVMIDGSK-LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVD 148 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcc
Confidence 355555554445554 4556677899999998655 56788888777776532 1 11111222
Q ss_pred cCC-CC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 708 ANR-NW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 708 aN~-~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
.+. .| ++++|.+|.+...- +|+ |-.+|--+++-++++++.+++|+.+.=.--... +.+++.++
T Consensus 149 ~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~----e~~~~ai~ 223 (284)
T PRK12857 149 EREAAMTDPEEARRFVEETGVDALAIAIGTAHGP-YKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPD----EAIRKAIS 223 (284)
T ss_pred cchhhcCCHHHHHHHHHHHCCCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHH
Confidence 222 25 79999999875422 122 344564479999999999999998865544432 46888888
Q ss_pred CCceEEEEcCCC
Q 041113 776 PGIVAIVIKPSV 787 (983)
Q Consensus 776 ~~~~~i~~k~~~ 787 (983)
.|+.=+|+....
T Consensus 224 ~Gi~KiNi~T~~ 235 (284)
T PRK12857 224 LGVRKVNIDTNI 235 (284)
T ss_pred cCCeEEEeCcHH
Confidence 888777887653
No 385
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=81.08 E-value=6 Score=48.24 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=74.6
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .--|+.-.+..+.+|.. .+.|+++|.-.=... .+ . ....+
T Consensus 71 A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~A~~--~~~Pvl~i~G~~~~~----~~-----------~--~~~~q 131 (587)
T PRK06965 71 AVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYM--DSIPMVVISGQVPTA----AI-----------G--QDAFQ 131 (587)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhh--cCCCEEEEecCCCcc----cc-----------C--CCCcc
Confidence 56688888887766666554 45566668899999987 899998876321111 00 0 01123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|...+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 132 ~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 132 ECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred cccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 468888888888889999999998887777753 2589999998874
No 386
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=80.95 E-value=5.2 Score=48.54 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=75.4
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++ .=-|+...+..|.+|.. .+.|+++|.-.-.....-+. ...+......+
T Consensus 62 A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~A~~--d~~Pvl~I~G~~~~~~~~~~---------~~~~~~~~~~q 130 (569)
T PRK08327 62 AISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAAR--SRIPVLVFAGRSPYTEEGEL---------GSRNTRIHWTQ 130 (569)
T ss_pred HHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHHHhh--cCCCEEEEeccCCccccccc---------cccccCcccch
Confidence 56677777777766666654 33445557899999987 89999888865332111000 00000011123
Q ss_pred C-CCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 N-ISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~-~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
. .|...+.+.+--...+|++++++...+.+|+. .+||+.|||..|
T Consensus 131 e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 131 EMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 3 58888889888888999999999888888763 368999999865
No 387
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=80.94 E-value=56 Score=36.08 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
-+.+.+.+.++.+.+.|.+.+=+--..+ .+.++=.+.++.+++.++.++.+++=.. . +.+++++.++..++.|.
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Ga 102 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGA 102 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCC
Confidence 4678899999999999999876532211 2345556778888888888899998664 5 88999999999999876
Q ss_pred ceee--cCCC---ChHH----HHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHH
Q 041113 730 QYIE--EPVQ---NEED----IIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 730 ~~iE--eP~~---~~~~----~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
..+- -|.. +.++ ++.+.+.+++||..=.. ... +-+.+.+..+.+..-.++-+|-+ +|-+....++.+.
T Consensus 103 dav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~-~g~-~l~~~~l~~L~~~~pni~giK~s-~~d~~~~~~~~~~ 179 (303)
T PRK03620 103 DGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR-DNA-VLTADTLARLAERCPNLVGFKDG-VGDIELMQRIVRA 179 (303)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC-CCC-CCCHHHHHHHHhhCCCEEEEEeC-CCCHHHHHHHHHH
Confidence 5433 3321 3344 35677888999887542 211 11334566666333355668876 4667776666543
Q ss_pred HHHcCCcEEeCC
Q 041113 801 AQRHGKMAVVSA 812 (983)
Q Consensus 801 A~~~gi~~~~~~ 812 (983)
.. -++.+..++
T Consensus 180 ~~-~~f~vl~G~ 190 (303)
T PRK03620 180 LG-DRLLYLGGL 190 (303)
T ss_pred cC-CCeEEEeCC
Confidence 32 256655443
No 388
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=80.78 E-value=20 Score=38.95 Aligned_cols=135 Identities=13% Similarity=0.156 Sum_probs=86.9
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---C------------CCcEEEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---G------------HRIELRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g------------~~~~l~vD 707 (983)
+||+.-.++-..+.+ .+.++++.||+.+-+.-.. .+.+++++..+++.+.. | .+-.+..+
T Consensus 74 ~VPV~lHLDHg~~~e----~i~~Ai~~GftSVM~DgS~-l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 148 (284)
T PRK09195 74 HHPLALHLDHHEKFD----DIAQKVRSGVRSVMIDGSH-LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVD 148 (284)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHcCCCEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccc
Confidence 355555554444543 4667778899999998655 56788887776665432 1 11111222
Q ss_pred cC-CCC-CHHHHHHHHhhcc--c--------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 708 AN-RNW-TYQEALEFGFLIK--D--------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 708 aN-~~~-~~~~a~~~~~~l~--~--------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
.+ ..| ++++|.+|.++.. - +|+ |-.+|--+++-++++++.+++|+.+.=.--... +++++.++
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~-y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~----e~~~~ai~ 223 (284)
T PRK09195 149 EADALYTDPAQAREFVEATGIDSLAVAIGTAHGM-YKGEPKLDFDRLENIRQWVNIPLVLHGASGLPT----KDIQQTIK 223 (284)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEeeccCccccc-cCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCH----HHHHHHHH
Confidence 22 225 8999999988532 1 232 445564479999999999999998876544432 46888888
Q ss_pred CCceEEEEcCCC
Q 041113 776 PGIVAIVIKPSV 787 (983)
Q Consensus 776 ~~~~~i~~k~~~ 787 (983)
.|+.=||+....
T Consensus 224 ~Gi~KiNi~T~l 235 (284)
T PRK09195 224 LGICKVNVATEL 235 (284)
T ss_pred cCCeEEEeCcHH
Confidence 888777876544
No 389
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=80.77 E-value=5.8 Score=48.24 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=71.8
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++. .-|+...+..+.+|-. .+.|+++|.-.=... .+. .+..+
T Consensus 53 A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~A~~--~~~Pvl~I~G~~~~~-~~~----------------~~~~Q 113 (578)
T PRK06546 53 AAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYDAHR--SGAPVLAIASHIPSA-QIG----------------SGFFQ 113 (578)
T ss_pred HHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHHHHh--cCCCEEEEeCCCCcc-ccC----------------CCCcc
Confidence 556777777777778887753 4455557789999987 899998887522111 100 00113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~ 451 (983)
..|...+.+.+=....+|++++++...+.+|+ ..+||+.|++..|
T Consensus 114 e~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 114 ETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred ccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 35666777776667889999999888777765 3479999998766
No 390
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=80.76 E-value=7 Score=48.49 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=57.4
Q ss_pred EEEEEccchhhhc--cchHHHHHhhccCCC---EEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHc
Q 041113 343 VLCVVGDISFLHD--TNGLAILKQRMKRKP---ILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAH 417 (983)
Q Consensus 343 vv~i~GDGsf~~~--~~eL~Ta~~~~~~lp---v~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~ 417 (983)
.|++-||.+|-=- +.|-..+++ -.+.+ .+.||+||. +|+--. +. .. ........+|+++
T Consensus 650 pi~~hGdaafagQGvV~Etlnla~-l~~y~tGGtIhvivNNq-iGftT~-p~--------~~-----Rss~y~td~ak~~ 713 (1228)
T PRK12270 650 PILLHGDAAFAGQGVVAETLNLSQ-LRGYRTGGTIHIVVNNQ-VGFTTA-PE--------SS-----RSSEYATDVAKMI 713 (1228)
T ss_pred EEEEeccccccCCchHHHHHHHHh-ccCCCCCCeEEEEEecC-cccccC-cc--------cc-----ccchhhHHHHhhc
Confidence 4568899997422 233333333 13566 677777776 443311 10 00 0123456788999
Q ss_pred CCceeeeC--CHHHHHHHHHhhhc----cCCCEEEEEEcCc
Q 041113 418 GLNHVQVK--TKVELEEALSMSQH----LGTDRVIEVESCI 452 (983)
Q Consensus 418 G~~~~~v~--~~~eL~~aL~~a~~----~~~p~lIeV~~~~ 452 (983)
++..+.|+ +++....+.+-|++ -++++|||+.+.+
T Consensus 714 ~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 714 QAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred CCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 99999886 56666666665553 4899999999876
No 391
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=80.60 E-value=36 Score=37.42 Aligned_cols=151 Identities=9% Similarity=0.027 Sum_probs=92.4
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhc---CCCEEEEeccCCC---------ChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEE---GFTAIKLKVARRA---------DPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~KiKig~~~---------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
.|+..++. .. ++++.+.+++..+. |...|-+-++.+. +++.=.+.++++|+.+. +.+.+=-.-.
T Consensus 92 ~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~--iPv~vKl~p~ 167 (294)
T cd04741 92 KPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYS--IPVGVKTPPY 167 (294)
T ss_pred CeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcC--CCEEEEeCCC
Confidence 45566663 33 88888888877664 6899999887641 34445667888888763 3444333334
Q ss_pred CCHHHHHHHHhhcccC--CCceee----------------cCC----------C----ChHHH---HHHHhhcC--CcEE
Q 041113 712 WTYQEALEFGFLIKDC--DLQYIE----------------EPV----------Q----NEEDI---IKYCEESG--LPVA 754 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~--~i~~iE----------------eP~----------~----~~~~~---~~l~~~~~--ipIa 754 (983)
|+.++..++++.+.+. ++.+|= .|. . .+..+ ++++++.+ +||.
T Consensus 168 ~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIi 247 (294)
T cd04741 168 TDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQII 247 (294)
T ss_pred CCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEE
Confidence 6766666777767665 322221 111 0 12223 55666663 8988
Q ss_pred eCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC-CHHHHHHHHHHHHH
Q 041113 755 LDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG-GFENAGLIARWAQR 803 (983)
Q Consensus 755 ~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~~~~~A~~ 803 (983)
+-=-+.+..| ..+++..|++.+++-..... |..-..++.+.-++
T Consensus 248 g~GGI~s~~d-----a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 248 GVGGVLDGRG-----AFRMRLAGASAVQVGTALGKEGPKVFARIEKELED 292 (294)
T ss_pred EeCCCCCHHH-----HHHHHHcCCCceeEchhhhhcCchHHHHHHHHHHh
Confidence 8777777654 33444578888888777664 77766666554443
No 392
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=80.55 E-value=8.2 Score=42.94 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=28.1
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHG 976 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G 976 (983)
-|.||.+||.++....|...+..-...|-|+++|.+|+|
T Consensus 83 ~Pavv~~hGyg~~~~~~~~~~~~a~~G~~vl~~d~rGqg 121 (320)
T PF05448_consen 83 LPAVVQFHGYGGRSGDPFDLLPWAAAGYAVLAMDVRGQG 121 (320)
T ss_dssp EEEEEEE--TT--GGGHHHHHHHHHTT-EEEEE--TTTS
T ss_pred cCEEEEecCCCCCCCCcccccccccCCeEEEEecCCCCC
Confidence 588999999999998898877766678999999999999
No 393
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=80.48 E-value=9.8 Score=40.29 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC---------------CCHHHH
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN---------------WTYQEA 717 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~---------------~~~~~a 717 (983)
+.++++..+.++++.+.|...+||.=+ .+=+++|+++|++- =-+-=++|+... -..+++
T Consensus 85 g~~~~~~~~~~~~l~~aGa~gv~iED~-----~~~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 85 YGAPTAAFELAKTFMRAGAAGVKIEGG-----EWHIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcCc-----HHHHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 346788999999999999999998532 34456788888763 112234676211 125688
Q ss_pred HHHHhhcccCC--CceeecCCCChHHHHHHHhhcCCcEEe
Q 041113 718 LEFGFLIKDCD--LQYIEEPVQNEEDIIKYCEESGLPVAL 755 (983)
Q Consensus 718 ~~~~~~l~~~~--i~~iEeP~~~~~~~~~l~~~~~ipIa~ 755 (983)
++.++.+++.| ..|+|-+ + .+..+++.+..++|+..
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~-~-~e~~~~i~~~~~~P~~~ 196 (240)
T cd06556 159 IADALAYAPAGADLIVMECV-P-VELAKQITEALAIPLAG 196 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC-C-HHHHHHHHHhCCCCEEE
Confidence 88888888875 5689877 5 89999999999999875
No 394
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.37 E-value=39 Score=35.09 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+.+.|++.+-+-.-. ..-.+.|+++|+.+ |+ +.|=+-.-.+.+++.+.. +.|-.|+
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~----~~~~~~I~~l~~~~-p~--~~IGAGTVl~~~~a~~a~----~aGA~Fi 91 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRT----PAALEAIRLIAKEV-PE--ALIGAGTVLNPEQLAQAI----EAGAQFI 91 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----ccHHHHHHHHHHHC-CC--CEEEEeeccCHHHHHHHH----HcCCCEE
Confidence 4689999999999999999998887543 35677899999998 55 455555666777765554 4688899
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cCCHHHHHHHHHHHHHcCCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~GGl~~~~~~~~~A~~~gi~~~~~ 811 (983)
=-|..+. +..+...+.++|+.-|=.-.+ ......+.|++++.+-|.- .||+.-.+.+...- -+++++..
T Consensus 92 vsP~~~~-~vi~~a~~~~i~~iPG~~Tpt-------Ei~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~~pt 161 (212)
T PRK05718 92 VSPGLTP-PLLKAAQEGPIPLIPGVSTPS-------ELMLGMELGLRTFKFFPAEASGGVKMLKALAGPF--PDVRFCPT 161 (212)
T ss_pred ECCCCCH-HHHHHHHHcCCCEeCCCCCHH-------HHHHHHHCCCCEEEEccchhccCHHHHHHHhccC--CCCeEEEe
Confidence 9998855 666667778999885543222 2455566789988887754 57777666665553 35776644
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 162 G 162 (212)
T PRK05718 162 G 162 (212)
T ss_pred C
Confidence 4
No 395
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.34 E-value=4.3 Score=42.85 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=38.0
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEEcCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~Dl~G~G~S~ 979 (983)
.|.||-.||++++...|..++..-...|-|+.+|.||.|.|+
T Consensus 83 ~P~vV~fhGY~g~~g~~~~~l~wa~~Gyavf~MdvRGQg~~~ 124 (321)
T COG3458 83 LPAVVQFHGYGGRGGEWHDMLHWAVAGYAVFVMDVRGQGSSS 124 (321)
T ss_pred cceEEEEeeccCCCCCccccccccccceeEEEEecccCCCcc
Confidence 689999999999999999888766778999999999999884
No 396
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=80.28 E-value=6.4 Score=47.34 Aligned_cols=107 Identities=9% Similarity=0.105 Sum_probs=73.0
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|.|.+.+++++.+|++ .--|+.-.++.+.++-. .+.|+++|.-.-. +.... .+. + .+
T Consensus 60 A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~~--~~~Pvl~i~g~~~-~~~~~------------~~~-~--~~ 121 (530)
T PRK07092 60 VVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFK--NHTPLVITAGQQA-RSILP------------FEP-F--LA 121 (530)
T ss_pred HHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHhh--cCCCEEEEecCCc-ccccC------------ccc-h--hc
Confidence 56788898888877877765 33344467899999987 8999987764321 11110 000 0 12
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
..|...+.+.+--...+|++++++.+.+.+|+. ..||+.|++..|-
T Consensus 122 ~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 122 AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred ccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 356777777776677889999998888887753 2589999998773
No 397
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=80.04 E-value=7.1 Score=47.48 Aligned_cols=106 Identities=17% Similarity=0.043 Sum_probs=71.1
Q ss_pred hHHHHHhhhhccCceEEEEEcc-chhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGD-ISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GD-Gsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-+++++.||+++= -|....++.+.+|.. .+.|+++|.-+-.....-+ +..+
T Consensus 53 A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~--~~~Pvl~i~G~~~~~~~~~-----------------~~~Q 113 (574)
T PRK09124 53 AAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHR--NHVPVLAIAAHIPSSEIGS-----------------GYFQ 113 (574)
T ss_pred HHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHHHhh--cCCCEEEEecCCccccCCC-----------------CCcc
Confidence 5567777777767888888632 345556788999887 8999988886433211100 0113
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhh----hccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMS----QHLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a----~~~~~p~lIeV~~~~ 452 (983)
..|...+.+..-....+|++++++...+++| ...+||+.|++..|-
T Consensus 114 ~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 114 ETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred ccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 3567777776666777899998876666655 445699999997663
No 398
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=80.03 E-value=16 Score=37.28 Aligned_cols=140 Identities=21% Similarity=0.264 Sum_probs=95.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCce
Q 041113 652 SNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~ 731 (983)
...++++..+.++.+.+.|++.+-+-.-. ..-.+.|+.+++.+ |+ +.|=|-.-.|.+++.+..+ .|-.|
T Consensus 15 r~~~~~~a~~~~~al~~gGi~~iEiT~~t----~~a~~~I~~l~~~~-p~--~~vGAGTV~~~e~a~~a~~----aGA~F 83 (196)
T PF01081_consen 15 RGDDPEDAVPIAEALIEGGIRAIEITLRT----PNALEAIEALRKEF-PD--LLVGAGTVLTAEQAEAAIA----AGAQF 83 (196)
T ss_dssp TTSSGGGHHHHHHHHHHTT--EEEEETTS----TTHHHHHHHHHHHH-TT--SEEEEES--SHHHHHHHHH----HT-SE
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEecCC----ccHHHHHHHHHHHC-CC--CeeEEEeccCHHHHHHHHH----cCCCE
Confidence 34678889999999999999999998754 23467888899998 55 5677778889998877654 57889
Q ss_pred eecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-CcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 732 IEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 732 iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
+=-|.- -+++.+..++.++|+.-|=.-.+ ......+.|++++.+=|. .+||..-.+.+..-. -+++++.
T Consensus 84 ivSP~~-~~~v~~~~~~~~i~~iPG~~Tpt-------Ei~~A~~~G~~~vK~FPA~~~GG~~~ik~l~~p~--p~~~~~p 153 (196)
T PF01081_consen 84 IVSPGF-DPEVIEYAREYGIPYIPGVMTPT-------EIMQALEAGADIVKLFPAGALGGPSYIKALRGPF--PDLPFMP 153 (196)
T ss_dssp EEESS---HHHHHHHHHHTSEEEEEESSHH-------HHHHHHHTT-SEEEETTTTTTTHHHHHHHHHTTT--TT-EEEE
T ss_pred EECCCC-CHHHHHHHHHcCCcccCCcCCHH-------HHHHHHHCCCCEEEEecchhcCcHHHHHHHhccC--CCCeEEE
Confidence 989987 56777777788999888765333 255556779999888775 468777665555432 2567654
Q ss_pred CC
Q 041113 811 SA 812 (983)
Q Consensus 811 ~~ 812 (983)
.+
T Consensus 154 tG 155 (196)
T PF01081_consen 154 TG 155 (196)
T ss_dssp BS
T ss_pred cC
Confidence 43
No 399
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=79.62 E-value=9.2 Score=40.62 Aligned_cols=114 Identities=17% Similarity=0.403 Sum_probs=70.6
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCC-CcEEEEEcC------CCCCHH---HHHHHHhhcccCCCce-
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDAN------RNWTYQ---EALEFGFLIKDCDLQY- 731 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~-~~~l~vDaN------~~~~~~---~a~~~~~~l~~~~i~~- 731 (983)
++.+.+.|... +-+|. ..-.|.+.+..+++.+|+ .+.+.+|.. .+|..+ ...++++.+++.++.+
T Consensus 91 ~~~~~~~Ga~~--v~iGs--~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i 166 (241)
T PRK13585 91 AASLLDLGVDR--VILGT--AAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI 166 (241)
T ss_pred HHHHHHcCCCE--EEECh--HHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 45555678875 56675 334567788999999875 455678865 344221 2344455555554332
Q ss_pred ----ee--cCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcC
Q 041113 732 ----IE--EPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785 (983)
Q Consensus 732 ----iE--eP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~ 785 (983)
++ .... +++.++++++...+||...=-+.+..| +..+.+.|++.+.+--
T Consensus 167 ~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~d-----i~~~~~~Ga~gv~vgs 223 (241)
T PRK13585 167 LFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDD-----LRALKEAGAAGVVVGS 223 (241)
T ss_pred EEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-----HHHHHHcCCCEEEEEH
Confidence 21 1111 567788998888999988888777653 4556667887766533
No 400
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=79.38 E-value=7.6 Score=41.02 Aligned_cols=113 Identities=18% Similarity=0.371 Sum_probs=71.0
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCC-CcEEEEEcCC------CC---CHHHHHHHHhhcccCCCce
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDANR------NW---TYQEALEFGFLIKDCDLQY 731 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~-~~~l~vDaN~------~~---~~~~a~~~~~~l~~~~i~~ 731 (983)
.++++.+.|... +=+|. ..-.|.+.++.+.+.+|. .+.+.+|... +| +..+..++++.+++.+..+
T Consensus 87 ~~~~~~~~Gad~--vvigs--~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 87 DIERLLDLGVSR--VIIGT--AAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred HHHHHHHcCCCE--EEECc--hHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 355666678665 44665 345678889999999986 6777788543 12 1223445556565554433
Q ss_pred e-------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 732 I-------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 732 i-------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
+ ++... +++.++++++.+++||...--+.+..| +..+.+.|++.+.+
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~d-----i~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDD-----IKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHH-----HHHHHHCCCCEEEE
Confidence 2 11111 567788888888999888877777643 44555567777664
No 401
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=79.22 E-value=1.5 Score=50.25 Aligned_cols=143 Identities=15% Similarity=0.136 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHhcCCceEEEEccCCC-hhHHH---HHHHHHHhcCCcE--EeccccCccchhhhhh-hhhhccccccccc
Q 041113 73 YCQMAEVLELVQGVNKGLLLVGAVHN-EDEIW---AVLHLARHIRWPV--VADILSGLRLRKLLAS-FLETEQNILFLDH 145 (983)
Q Consensus 73 ~~~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~---~l~~lae~l~~Pv--~~t~~sg~~~~~~kg~-~~~~hp~~~~~g~ 145 (983)
+...+++++.|..|||.+|+-|+|.. .++.. ++.++.|+.|+-| .-.|-+|+ -+.+-.+ +-|-+-.
T Consensus 294 ~~~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGR-MPGHMNVLLAEa~Vp------ 366 (463)
T PF02233_consen 294 EISAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGR-MPGHMNVLLAEANVP------ 366 (463)
T ss_dssp BESHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSS-STTHHHHHHHHCT--------
T ss_pred ccCHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCC-CCCcceEEEEecCCC------
Confidence 34578889999999999999999843 33344 4555555556544 23333331 1100000 0010000
Q ss_pred hhhh-ccCccccccCCCCEEEEeCCccccHHHHHH-----------HHhcCCceEEEEcCCCC--CCC---C--CCCeeE
Q 041113 146 LDHA-LLSESVKDWIQFDVIIQIGSRITSKRISQM-----------IEECFPCTYILVDNHPC--RHD---P--SHSVTH 206 (983)
Q Consensus 146 ~g~~-~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~-----------~~~~~~~~~i~id~d~~--~~~---~--~~~~~~ 206 (983)
|+.. --++.|..+.+.|++|++|..-.-.+.... .+-++.+++|.+..+-. .-+ + +.+.+.
T Consensus 367 Yd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~ 446 (463)
T PF02233_consen 367 YDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTR 446 (463)
T ss_dssp GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEE
T ss_pred HHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcE
Confidence 1100 112344567899999999986432221110 11122345555543321 111 1 133456
Q ss_pred EEEcCHHHHHHHHHhc
Q 041113 207 RIQSTIVQFVDFLLKV 222 (983)
Q Consensus 207 ~i~~d~~~~l~~L~~~ 222 (983)
-+.+|++..+++|...
T Consensus 447 MlfGDAk~~~~~l~~~ 462 (463)
T PF02233_consen 447 MLFGDAKKTLEELVAE 462 (463)
T ss_dssp EEES-HHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHh
Confidence 6789999999998753
No 402
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=78.83 E-value=6.6 Score=39.95 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=36.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhC--CCEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSG--SARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~--~~~vi~~Dl~G~G~S~~~ 981 (983)
.|+++.+||..+|--..-+++.-+=. +..|+.++.||+|.|+..
T Consensus 78 ~pTlLyfh~NAGNmGhr~~i~~~fy~~l~mnv~ivsYRGYG~S~Gs 123 (300)
T KOG4391|consen 78 RPTLLYFHANAGNMGHRLPIARVFYVNLKMNVLIVSYRGYGKSEGS 123 (300)
T ss_pred CceEEEEccCCCcccchhhHHHHHHHHcCceEEEEEeeccccCCCC
Confidence 79999999999998888777765532 589999999999999753
No 403
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=78.79 E-value=7.9 Score=47.27 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=71.6
Q ss_pred hHHHHHhhhhccCceEEEEEc-cchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVVG-DISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~G-DGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+.+++++.+|++- --|....++.+..|.. .+.|+++|.-.=....+ . + ...+
T Consensus 54 A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~--d~vPvl~I~G~~~~~~~-~--------------~--~~~q 114 (597)
T PRK08273 54 AAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKL--DHVPVVAIVGQQARAAL-G--------------G--HYQQ 114 (597)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHh--cCCCEEEEecCCchhhc-C--------------C--CCCC
Confidence 566777877777677776552 3344456799999987 89999888743111100 0 0 0113
Q ss_pred CCCHHHHHHHcC-CceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHG-LNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G-~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+- ....+|++++++...+++|+ ...||+.|++..|-
T Consensus 115 ~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 115 EVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred ccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 467777888776 67889999888877777765 34689999998774
No 404
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=78.36 E-value=2.9 Score=44.45 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=33.6
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHG 976 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G~G 976 (983)
=|.+||+|||......+..++++++.. |-||++|+...+
T Consensus 17 yPVv~f~~G~~~~~s~Ys~ll~hvAShGyIVV~~d~~~~~ 56 (259)
T PF12740_consen 17 YPVVLFLHGFLLINSWYSQLLEHVASHGYIVVAPDLYSIG 56 (259)
T ss_pred cCEEEEeCCcCCCHHHHHHHHHHHHhCceEEEEecccccC
Confidence 489999999998777888899999876 999999966644
No 405
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=78.28 E-value=7.1 Score=47.05 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=73.2
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+-.++++.+|++ .--|+.-.+..+.+|.. .+.|+++|.-.-......+ ...+
T Consensus 48 A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~A~~--~~~Pvl~I~G~~~~~~~~~-----------------~~~q 108 (539)
T TIGR02418 48 AAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLATANS--EGDPVVAIGGQVKRADLLK-----------------LTHQ 108 (539)
T ss_pred HHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHHHhh--cCCCEEEEeCCCccccccc-----------------Cccc
Confidence 45677777777666666655 33344557789999887 8999988886433221100 1123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcCc
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESCI 452 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~~ 452 (983)
.+|-..+.+.+=....++++++++.+.+.+|++ .+||+.|++..|-
T Consensus 109 ~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 109 SMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred ccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 467778888887778899999998888877753 2589999998773
No 406
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=78.11 E-value=12 Score=42.23 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=69.3
Q ss_pred hHHHHHhhhhcc-CceEEEEEccchhhhccchHHHHH-hhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILK-QRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~-~~~vv~i~GDGsf~~~~~eL~Ta~-~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
|++.|.|+.+|. .+++|.+ =-.|+.-++|-|..++ ..-|++|+++||--=+.++.... +++..
T Consensus 38 av~iaaG~~latG~~~~v~m-QnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~de-pqh~~------------- 102 (361)
T TIGR03297 38 AVGLAAGAYLATGKRAAVYM-QNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDE-PQHVK------------- 102 (361)
T ss_pred HHHHHHHHHHhcCCccEEEE-ecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCC-chhhH-------------
Confidence 899999999997 5555554 4455665666665552 12389999888876666553311 11100
Q ss_pred CCCCHHHHHHHcCCceeee-CCHHHHHH----HHHhhhccCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQV-KTKVELEE----ALSMSQHLGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v-~~~~eL~~----aL~~a~~~~~p~lIeV~~~ 451 (983)
..---..+-+++|+++..+ ++.+|..+ +++.+++.++|+.|=|.-+
T Consensus 103 ~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~ 153 (361)
T TIGR03297 103 QGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKG 153 (361)
T ss_pred HhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccc
Confidence 0112356889999999999 45555444 4555556789988776533
No 407
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=78.09 E-value=27 Score=38.04 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=87.5
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCc------------EEEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRI------------ELRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~------------~l~vD 707 (983)
+||+.-.++-+.+.+ .+.+.++.||+.+-+.-.. .+.++.+++.+.+.+.. |-.+ ..-.+
T Consensus 77 ~VPV~lHLDHg~~~e----~i~~ai~~GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 151 (288)
T TIGR00167 77 GVPVALHLDHGASEE----DCAQAVKAGFSSVMIDGSH-EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVA 151 (288)
T ss_pred CCcEEEECCCCCCHH----HHHHHHHcCCCEEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccc
Confidence 456655555445554 4556677899999998665 56788888777776532 1111 00112
Q ss_pred cC-CCC-CHHHHHHHHhhccc----------CCCceeecCC-CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 708 AN-RNW-TYQEALEFGFLIKD----------CDLQYIEEPV-QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 708 aN-~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~-~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
.+ ..| ++++|.+|.++..- +| .|-..|- -|++-++++++.+++|+.+.=.-.... +.+++.+
T Consensus 152 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG-~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~----e~~~~ai 226 (288)
T TIGR00167 152 DESALYTDPEEAKEFVKLTGVDSLAAAIGNVHG-VYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPD----EEIKKAI 226 (288)
T ss_pred cccccCCCHHHHHHHHhccCCcEEeeccCcccc-ccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHH
Confidence 22 225 78999999875432 12 2445677 379999999999999998876544432 3688888
Q ss_pred CCCceEEEEcCCC
Q 041113 775 HPGIVAIVIKPSV 787 (983)
Q Consensus 775 ~~~~~~i~~k~~~ 787 (983)
..|+.=+|+....
T Consensus 227 ~~Gi~KiNi~T~l 239 (288)
T TIGR00167 227 SLGVVKVNIDTEL 239 (288)
T ss_pred HcCCeEEEcChHH
Confidence 8887667876543
No 408
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=77.79 E-value=7.8 Score=47.00 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=73.9
Q ss_pred hHHHHHhhhhccCceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTH 406 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 406 (983)
+.-+|-|.+..++++.+|++ ---|+.-.+..+..|.. .+.|+++|.-.=..... .. ...+
T Consensus 53 A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~A~~--~~~Pvl~i~G~~~~~~~--------------~~---~~~q 113 (563)
T PRK08527 53 AVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYM--DSIPLVLISGQVPNSLI--------------GT---DAFQ 113 (563)
T ss_pred HHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHHHhh--cCCCEEEEecCCCcccc--------------CC---CCCc
Confidence 67788888777776766654 33445557799999887 89999888742111100 00 0123
Q ss_pred CCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 407 NISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 407 ~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
.+|-..+.+.+--...+|++++++..+|++|++ .+||+.|++..|
T Consensus 114 ~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 114 EIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred ccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 467778888887788899999999999998764 258999999876
No 409
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=77.65 E-value=78 Score=34.64 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
-+.+.+.+.++.+++.|.+.+=+--..+ .+.++=.+.++.+.+..+.++.+.+=.. . +.++++++++..++.|.
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGA 95 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCC
Confidence 3678899999999999999876542211 2344556677888888877888888664 4 88999999999998876
Q ss_pred ceeec--CCC---ChHHH----HHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHH
Q 041113 730 QYIEE--PVQ---NEEDI----IKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 730 ~~iEe--P~~---~~~~~----~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
..+-= |.. +.+++ +.+.+.+++||..=.. .+. +-..+.+.++.+..-.++-+|-+ +|-+....++.+.
T Consensus 96 d~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~-~g~-~l~~~~l~~L~~~~pnivgiKds-~~d~~~~~~~~~~ 172 (289)
T cd00951 96 DGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR-ANA-VLTADSLARLAERCPNLVGFKDG-VGDIELMRRIVAK 172 (289)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC-CCC-CCCHHHHHHHHhcCCCEEEEEeC-CCCHHHHHHHHHh
Confidence 54332 322 34443 5677788999887652 221 11345666666422345567765 4666666665443
Q ss_pred HHHcCCcEEeCC
Q 041113 801 AQRHGKMAVVSA 812 (983)
Q Consensus 801 A~~~gi~~~~~~ 812 (983)
.. .++.++.++
T Consensus 173 ~~-~~~~v~~G~ 183 (289)
T cd00951 173 LG-DRLLYLGGL 183 (289)
T ss_pred cC-CCeEEEeCC
Confidence 22 356655554
No 410
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=77.56 E-value=52 Score=35.35 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEec-----cCC-CChHHHHHHHH----HHHHHcCCCcEEEEEcCCCCCHHHHHHHHhh
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKV-----ARR-ADPIKDAEVIQ----EVRKKVGHRIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKi-----g~~-~~~~~d~~~v~----~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
.++++..++++++.+.|-..+++-. |.. -+.+++++|+. ++++.+ ++.|.+|....-..+.|++.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~--~~plsiDT~~~~vi~~al~~--- 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP--DVPISVDTYRAEVARAALEA--- 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCHHHHHHHHHc---
Confidence 4789999999999999999999831 110 13444555554 344333 68899998766666666554
Q ss_pred cccCCCceeecCCC-ChHHHHHHHhhcCCcEEeCCCccCcC--------CC----hH----HHHHhhcCCCc--eEEEEc
Q 041113 724 IKDCDLQYIEEPVQ-NEEDIIKYCEESGLPVALDETIDKFQ--------KD----PL----NMLEKYAHPGI--VAIVIK 784 (983)
Q Consensus 724 l~~~~i~~iEeP~~-~~~~~~~l~~~~~ipIa~dEs~~~~~--------~~----~~----~~~~~~~~~~~--~~i~~k 784 (983)
|..+|..=-. ..+.+..+.++.+.|+.+--+-.... ++ .. ..+..+.+.|+ ..+.+|
T Consensus 95 ----G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD 170 (257)
T TIGR01496 95 ----GADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD 170 (257)
T ss_pred ----CCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 5555554332 12345555666666655411110000 00 11 12233445566 457899
Q ss_pred CCC-cC-CH---HHHHHHHHHHHHcCCcEEeCCC
Q 041113 785 PSV-IG-GF---ENAGLIARWAQRHGKMAVVSAA 813 (983)
Q Consensus 785 ~~~-~G-Gl---~~~~~~~~~A~~~gi~~~~~~~ 813 (983)
|.. .+ .. .++++-.+..++.|.+++++.+
T Consensus 171 Pg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~S 204 (257)
T TIGR01496 171 PGIGFGKTPEHNLELLKHLEEFVALGYPLLVGAS 204 (257)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 953 11 11 1222455555668899888764
No 411
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=77.55 E-value=12 Score=38.42 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhcccCCCceeec--CCC---ChHHHHHHHhh-cCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 702 IELRVDANRNWTYQEALEFGFLIKDCDLQYIEE--PVQ---NEEDIIKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 702 ~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEe--P~~---~~~~~~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
+.+.+| ..+.+++.++++.|.+. +.|+|= |+- ..+.++.+++. .++||..+=.+.+... ..+..+.+
T Consensus 3 ~~~a~d---~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~---~~~~~~~~ 75 (202)
T cd04726 3 LQVALD---LLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGA---LEAEMAFK 75 (202)
T ss_pred eEEEEc---CCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccH---HHHHHHHh
Confidence 445564 45789999999999998 999999 553 35667888876 5889988866555421 23466677
Q ss_pred CCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe
Q 041113 776 PGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV 810 (983)
Q Consensus 776 ~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~ 810 (983)
.|++++.+...- +.....++++.|+++|+++.+
T Consensus 76 aGad~i~~h~~~--~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 76 AGADIVTVLGAA--PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred cCCCEEEEEeeC--CHHHHHHHHHHHHHcCCeEEE
Confidence 899988765432 234467788999999999875
No 412
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.50 E-value=5.1 Score=41.19 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=66.8
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCc
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVI 788 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~ 788 (983)
+.+++++.++.|-+.++..+|=++.+ .+.+++++++.+ +.|-.|- +.+. ++++..++.|+++++ -|..
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGT-Vl~~-----~~a~~a~~aGA~Fiv-sP~~- 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGT-VLNP-----EQLRQAVDAGAQFIV-SPGL- 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEe-CCCH-----HHHHHHHHcCCCEEE-CCCC-
Confidence 88999999999999999999999983 344577777654 4455543 3443 357778888998864 2322
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCCchH
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAFESG 817 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~es~ 817 (983)
..++++.|+++|+.++.+.+.-|-
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptE 113 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSE 113 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHH
Confidence 347999999999997766664443
No 413
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=77.49 E-value=30 Score=37.65 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=86.0
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCc-----------EEEEEcC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRI-----------ELRVDAN 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~-----------~l~vDaN 709 (983)
||+.-.++-+.+.+. ++++++.||+.+-+.-.. .+.+++++..+.+.+.. |-.+ .-..+.+
T Consensus 78 vPV~lHLDHg~~~e~----i~~ai~~GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 152 (286)
T PRK08610 78 IPVAIHLDHGSSFEK----CKEAIDAGFTSVMIDASH-SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADG 152 (286)
T ss_pred CCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcc
Confidence 555555555555554 456677899999998665 56788888777776532 1100 0001112
Q ss_pred CCC-CHHHHHHHHhhccc----------CCCceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCc
Q 041113 710 RNW-TYQEALEFGFLIKD----------CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~----------~~i~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~ 778 (983)
.-| ++++|.+|.++..- +|+ |-.+|=-+++-++++++.+++|+.+.=.--... +.+++.+..|+
T Consensus 153 ~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~-Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~----e~~~~ai~~GI 227 (286)
T PRK08610 153 IIYADPKECQELVEKTGIDALAPALGSVHGP-YKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPT----KDIQKAIPFGT 227 (286)
T ss_pred cccCCHHHHHHHHHHHCCCEEEeeccccccc-cCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCH----HHHHHHHHCCC
Confidence 235 89999999875421 122 334554479999999999999998876544432 46888888888
Q ss_pred eEEEEcCCC
Q 041113 779 VAIVIKPSV 787 (983)
Q Consensus 779 ~~i~~k~~~ 787 (983)
.=+|+....
T Consensus 228 ~KiNi~T~l 236 (286)
T PRK08610 228 AKINVNTEN 236 (286)
T ss_pred eEEEeccHH
Confidence 777877653
No 414
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.48 E-value=6.4 Score=40.85 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=65.2
Q ss_pred CCCHHHHHHHHhhcccCCCceeecCCCCh---HHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC
Q 041113 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNE---EDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS 786 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~iEeP~~~~---~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~ 786 (983)
.-+.++++++++.|.+.++..+|=++..+ +.+++++++.+ +-|..|-- .+. ..++...+.|+++++.-
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTV-l~~-----~~a~~a~~aGA~FivsP-- 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTV-LNP-----EQLAQAIEAGAQFIVSP-- 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeec-cCH-----HHHHHHHHcCCCEEECC--
Confidence 45799999999999999999999998733 34567776654 44555543 332 25777788899886522
Q ss_pred CcCCHHHHHHHHHHHHHcCCcEEeCCCC
Q 041113 787 VIGGFENAGLIARWAQRHGKMAVVSAAF 814 (983)
Q Consensus 787 ~~GGl~~~~~~~~~A~~~gi~~~~~~~~ 814 (983)
|+.+ .+++.|+++++.++.+++.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~T 117 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVST 117 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCC
Confidence 2333 6889999999996656553
No 415
>PRK06154 hypothetical protein; Provisional
Probab=77.43 E-value=8.6 Score=46.59 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=70.6
Q ss_pred hHHHHHhhhhcc--CceEEEEE-ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccccccc
Q 041113 328 LLSTAIGFAVGC--NKHVLCVV-GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYT 404 (983)
Q Consensus 328 ~lpaaiGaalA~--~~~vv~i~-GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~ 404 (983)
+.-+|-|.+-++ +++.+|++ ---|+...+..|.++.. .+.|+++|.-........ .
T Consensus 66 A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~--~~~Pvl~i~G~~~~~~~~-------------~------ 124 (565)
T PRK06154 66 AVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYG--DSVPVLFLPTGYPRGSTD-------------V------ 124 (565)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhh--cCCCEEEEeCCCCccccc-------------C------
Confidence 456777777765 37777754 33345557899999987 899998887543321100 0
Q ss_pred CCCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 405 THNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 405 ~~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
....|-..+.+.+-....+|++++++.+.+++|+. .+||+.|||..|
T Consensus 125 ~~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 125 APNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred CCCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 01134456777777788899999998888887763 368999999876
No 416
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=77.37 E-value=2.9 Score=44.98 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=41.7
Q ss_pred ccccCCCCEEEEeCCccccHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHH
Q 041113 155 VKDWIQFDVIIQIGSRITSKRISQMIEEC--FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFV 216 (983)
Q Consensus 155 ~~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l 216 (983)
...+.+||++|+||+++.-.......... ...++|.|+.++..++. ..++.+.+++.++|
T Consensus 199 ~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~--~a~~~i~~~~~~~l 260 (260)
T cd01409 199 AARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH--LATLKVDARCGEVL 260 (260)
T ss_pred HHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc--cccEEEeCChhhhC
Confidence 34567899999999998755544443221 23468889999887664 35778888887653
No 417
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=77.33 E-value=5.1 Score=43.32 Aligned_cols=66 Identities=6% Similarity=0.097 Sum_probs=45.9
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHh--cCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhcc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEE--CFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~~ 223 (983)
..+++||++|++|+++.-.....+... ....++|.|+.++..++. ...++.+.+++..++. +...+
T Consensus 195 ~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~-~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 195 KEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITN-RISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred HHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCC-ccccEEEECcHHHHHH-HHHHh
Confidence 456899999999999876665544432 233468889998876542 2367889999999885 43444
No 418
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.24 E-value=11 Score=42.31 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCC--------CChHHHHHHHHHHHHHcCC---CcEEEEEcCCCCCHHHHHHHHhh
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARR--------ADPIKDAEVIQEVRKKVGH---RIELRVDANRNWTYQEALEFGFL 723 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~--------~~~~~d~~~v~~vr~~~g~---~~~l~vDaN~~~~~~~a~~~~~~ 723 (983)
..+++.+.++++. .+...+-+-++.+ .+++.-.+.+++||+++++ ++.+.+=-.-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 5678888777764 3688888877643 1233446788999998863 35555554555787888899998
Q ss_pred cccCCCceee
Q 041113 724 IKDCDLQYIE 733 (983)
Q Consensus 724 l~~~~i~~iE 733 (983)
+++.++..|.
T Consensus 234 l~~~Gadgi~ 243 (344)
T PRK05286 234 ALEHGIDGVI 243 (344)
T ss_pred HHHhCCcEEE
Confidence 8887766553
No 419
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=77.24 E-value=67 Score=32.64 Aligned_cols=138 Identities=16% Similarity=0.184 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+.+.|++.+-+..-. ....+.++.+++.+ +++ .+-+-.-.+.+++..... .+-.++
T Consensus 12 ~~~~~~~~~~~~~l~~~G~~~vev~~~~----~~~~~~i~~l~~~~-~~~--~iGag~v~~~~~~~~a~~----~Ga~~i 80 (190)
T cd00452 12 GDDAEDALALAEALIEGGIRAIEITLRT----PGALEAIRALRKEF-PEA--LIGAGTVLTPEQADAAIA----AGAQFI 80 (190)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----hhHHHHHHHHHHHC-CCC--EEEEEeCCCHHHHHHHHH----cCCCEE
Confidence 4578999999999999999999998753 23667899999888 443 334433445555433322 344444
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHHHHHc-CCcEEeC
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRH-GKMAVVS 811 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~-gi~~~~~ 811 (983)
==|-. ..++.+.++..++++..|=+ +.. ......+.|+|++.+.+...-|..-...+ .+.. +++++..
T Consensus 81 ~~p~~-~~~~~~~~~~~~~~~i~gv~--t~~-----e~~~A~~~Gad~i~~~p~~~~g~~~~~~l---~~~~~~~p~~a~ 149 (190)
T cd00452 81 VSPGL-DPEVVKAANRAGIPLLPGVA--TPT-----EIMQALELGADIVKLFPAEAVGPAYIKAL---KGPFPQVRFMPT 149 (190)
T ss_pred EcCCC-CHHHHHHHHHcCCcEECCcC--CHH-----HHHHHHHCCCCEEEEcCCcccCHHHHHHH---HhhCCCCeEEEe
Confidence 33443 44566666777888877655 433 35555667999999887654455533332 2333 4665544
Q ss_pred C
Q 041113 812 A 812 (983)
Q Consensus 812 ~ 812 (983)
+
T Consensus 150 G 150 (190)
T cd00452 150 G 150 (190)
T ss_pred C
Confidence 3
No 420
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=77.22 E-value=52 Score=36.39 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc-CCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~-g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
.++|+-.++++.....-...+-+-+|. -++|.++++++-++- +.| .|.+|.-++++...
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~---~~~d~er~~~L~~a~~~~d-~iviD~AhGhs~~~---------------- 137 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGS---SDNDLEKMTSILEAVPQLK-FICLDVANGYSEHF---------------- 137 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEecc---CHHHHHHHHHHHhcCCCCC-EEEEECCCCcHHHH----------------
Confidence 477887888776444334455567775 367899999999873 455 47789888887542
Q ss_pred ecCCCChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcC--C-CcC----------CHHHHHHHH
Q 041113 733 EEPVQNEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP--S-VIG----------GFENAGLIA 798 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~--~-~~G----------Gl~~~~~~~ 798 (983)
.+.++++++.. +.+|..|.-+. . +..+.+++.|+|.+.+-+ + .|+ =++...+++
T Consensus 138 ------i~~ik~ir~~~p~~~viaGNV~T-~-----e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 138 ------VEFVKLVREAFPEHTIMAGNVVT-G-----EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ------HHHHHHHHhhCCCCeEEEecccC-H-----HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 23334444443 35555554322 2 235566667887765431 1 222 377888888
Q ss_pred HHHHHcCCcEEeCCCCchH
Q 041113 799 RWAQRHGKMAVVSAAFESG 817 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~~es~ 817 (983)
+.|+.++++++.-+....+
T Consensus 206 ~aa~~~~v~VIaDGGIr~~ 224 (343)
T TIGR01305 206 DAAHGLKGHIISDGGCTCP 224 (343)
T ss_pred HHhccCCCeEEEcCCcCch
Confidence 8888889988876665444
No 421
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.10 E-value=22 Score=37.53 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=66.5
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCC------CCHH---HHHHHHhhcccCCC---
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRN------WTYQ---EALEFGFLIKDCDL--- 729 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~------~~~~---~a~~~~~~l~~~~i--- 729 (983)
.++++.+.|...+ =+|. ..-+|.+.++.+.+.+|..+-+.+|+... |... +..++++.++++++
T Consensus 90 ~v~~~l~~Ga~kv--vigt--~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~i 165 (234)
T PRK13587 90 QIMDYFAAGINYC--IVGT--KGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGI 165 (234)
T ss_pred HHHHHHHCCCCEE--EECc--hHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEE
Confidence 4666777787775 3564 34568889999999999889999998433 4211 12344444444432
Q ss_pred ceeecCC------CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEE
Q 041113 730 QYIEEPV------QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782 (983)
Q Consensus 730 ~~iEeP~------~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~ 782 (983)
.+-.--- ++.+-++++++.+++||-..=-+.+..| +..+.+.|++.+.
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~ed-----i~~l~~~G~~~vi 219 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQD-----IQRLASLNVHAAI 219 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHH-----HHHHHHcCCCEEE
Confidence 2222211 1355567777777777766655565542 4444455665544
No 422
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=76.98 E-value=11 Score=39.67 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=67.0
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCC-cEEEEEcCCC------------C---CHHHHHHHHhhccc
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHR-IELRVDANRN------------W---TYQEALEFGFLIKD 726 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~-~~l~vDaN~~------------~---~~~~a~~~~~~l~~ 726 (983)
++++.+.|+..+ =+|. ..-++.+.++.+.+.+|.. +.+.+|.... | +..+.+++++.+++
T Consensus 89 ~~~~~~~G~~~v--ilg~--~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (232)
T TIGR03572 89 AKKLLSLGADKV--SINT--AALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQ 164 (232)
T ss_pred HHHHHHcCCCEE--EECh--hHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHH
Confidence 334455687765 4454 3456678888888888766 6778886542 3 23345677777777
Q ss_pred CCCceee------cCC---CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHh-hcCCCceEEE
Q 041113 727 CDLQYIE------EPV---QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEK-YAHPGIVAIV 782 (983)
Q Consensus 727 ~~i~~iE------eP~---~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~-~~~~~~~~i~ 782 (983)
.++.++. +.. ++++-++++++..++||.+.=-+.+..| +.. +...|++.+.
T Consensus 165 ~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~d-----i~~~l~~~gadgV~ 225 (232)
T TIGR03572 165 LGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDD-----LVEVALEAGASAVA 225 (232)
T ss_pred cCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHH-----HHHHHHHcCCCEEE
Confidence 7765443 111 1456667777777778777666665542 333 4445666554
No 423
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=76.86 E-value=5.1 Score=47.65 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=54.5
Q ss_pred CCCCccchHHHHHhhhhcc-CceEEEEEccc-h----hhhccch--HHHHHhhccCCCEEEEEEeCCCCccccCCCCCCC
Q 041113 321 GASGIDGLLSTAIGFAVGC-NKHVLCVVGDI-S----FLHDTNG--LAILKQRMKRKPILMLVINNHGGAIFSLLPIADR 392 (983)
Q Consensus 321 G~mG~~g~lpaaiGaalA~-~~~vv~i~GDG-s----f~~~~~e--L~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~ 392 (983)
|-+|| +++-|.||++-+ +.-|.|++||| + ..++... .+...+ -+.=+-|+++ |||.|...
T Consensus 153 GeLGy--~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~--dGavLPIL~l--NGykI~np------ 220 (793)
T COG3957 153 GELGY--ALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPAR--DGAVLPILHL--NGYKIENP------ 220 (793)
T ss_pred cchhH--HHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccc--cCceeeEEEe--cceeccCc------
Confidence 88999 999999999999 99999999999 3 3444433 222222 1221223333 47766522
Q ss_pred CCccccccccccCCCCCHHHHHHHcCCceeeeCC
Q 041113 393 TEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT 426 (983)
Q Consensus 393 ~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~ 426 (983)
..++...+-++..+=++||.+-+.|+.
T Consensus 221 -------T~lar~s~~el~~~f~G~Gy~p~~veg 247 (793)
T COG3957 221 -------TVLARISDEELKALFEGYGYEPVFVEG 247 (793)
T ss_pred -------eeeeecChHHHHHHHhhCCCceeEecC
Confidence 122333445677777888877666664
No 424
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=76.78 E-value=21 Score=44.43 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=63.7
Q ss_pred cchhhHHHHHHHHhc------CCceEEEEccCCChhHHHHHHHHHHh-cCCcEEeccccCccchhhhhhhhhhccccccc
Q 041113 71 YTYCQMAEVLELVQG------VNKGLLLVGAVHNEDEIWAVLHLARH-IRWPVVADILSGLRLRKLLASFLETEQNILFL 143 (983)
Q Consensus 71 ~~~~~i~~~~~~L~~------AkrPvIl~G~g~~~~~~~~l~~lae~-l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~ 143 (983)
..+++++.+++.|++ .++..++.|.+........+.+|++. +|.+-+.+.. ... -+.....+..
T Consensus 69 sWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~~gs~~~~~~~-~~~----~~~~~~~~~~---- 139 (671)
T TIGR01591 69 SWDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTNEENYLLQKLARAVIGTNNVDNCA-RVC----HGPSVAGLKQ---- 139 (671)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCcccHHHHHHHHHHHHhcCCccccCCC-Cce----ehhhhHHHHH----
Confidence 456788888888873 45667777765443334577899996 9987665431 100 0001001111
Q ss_pred cchhhhccCccccccCCCCEEEEeCCccccHH--HHHHHHh--cCCceEEEEcCCCCC
Q 041113 144 DHLDHALLSESVKDWIQFDVIIQIGSRITSKR--ISQMIEE--CFPCTYILVDNHPCR 197 (983)
Q Consensus 144 g~~g~~~~~~~~~~~~~aDlvl~iG~~~~~~~--~~~~~~~--~~~~~~i~id~d~~~ 197 (983)
.+|..........+.+||+||++|+.+.... ...++.. -...++|.||.....
T Consensus 140 -~~G~~~~~~~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ 196 (671)
T TIGR01591 140 -TVGIGAMSNTISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTE 196 (671)
T ss_pred -hhCCCCCCCCHHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCCh
Confidence 0111111112235788999999999865432 2223221 123478888876543
No 425
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=76.67 E-value=3.9 Score=41.62 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=35.5
Q ss_pred CceEEEeCCCCCChh--hHHHHHHHhhCC-CEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGE--EWIPIMKAVSGS-ARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~--~w~~~~~~l~~~-~~vi~~Dl~G~G~S~~ 980 (983)
...+|++|||-++.. ....+..+|.+. +.++.+|.+|-|.|+.
T Consensus 33 ~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~g 78 (269)
T KOG4667|consen 33 TEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEG 78 (269)
T ss_pred ceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCC
Confidence 468999999998764 455677788764 9999999999999974
No 426
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=76.66 E-value=16 Score=36.46 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=61.9
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccch-H-HHHHhhc------cCCCEEEEEEeCCCCccccCCCCCCCCCccccc
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNG-L-AILKQRM------KRKPILMLVINNHGGAIFSLLPIADRTEPRILD 399 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~e-L-~Ta~~~~------~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~ 399 (983)
.++.|.|.++. +.++++-+.=..|+.-.-| | ..++... .++|++++. ..++++.. +
T Consensus 56 ~vg~AaGlA~~-G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg~~~~-----G--------- 119 (167)
T cd07036 56 IVGLAVGAAMN-GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGGGIGG-----G--------- 119 (167)
T ss_pred HHHHHHHHHHc-CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCCCCCc-----C---------
Confidence 57777777665 5555554455666542111 2 1122210 258887775 66654311 0
Q ss_pred cccccCCCCCHHHHHHHc-CCceeeeCCHHHHHHHHHhhhccCCCEEEE
Q 041113 400 QYFYTTHNISIQNLCLAH-GLNHVQVKTKVELEEALSMSQHLGTDRVIE 447 (983)
Q Consensus 400 ~~~~~~~~~df~~la~a~-G~~~~~v~~~~eL~~aL~~a~~~~~p~lIe 447 (983)
.+ +...+..+.+++ |+.-....+..|++..++.+.+.++|+++-
T Consensus 120 ---~t-hs~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~P~~~~ 164 (167)
T cd07036 120 ---AQ-HSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFL 164 (167)
T ss_pred ---hh-hhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 01 223445677777 778888999999999999999889998863
No 427
>PLN02979 glycolate oxidase
Probab=76.35 E-value=77 Score=35.66 Aligned_cols=86 Identities=7% Similarity=0.016 Sum_probs=59.0
Q ss_pred ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC----cCCHHHHHHHHHHHHHc--CCcEEeC
Q 041113 738 NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV----IGGFENAGLIARWAQRH--GKMAVVS 811 (983)
Q Consensus 738 ~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~----~GGl~~~~~~~~~A~~~--gi~~~~~ 811 (983)
+|+++++|++..++||..-|-.. .. ....+.+.|+|.|++.-.- -++++...-+.+++++. .+++++.
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~~-~~-----dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~d 284 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVLT-GE-----DARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD 284 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCCC-HH-----HHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEe
Confidence 59999999999999999999743 22 4667778899987654321 12233344444455554 3888888
Q ss_pred CCCchHHHHHHHHHHHhh
Q 041113 812 AAFESGLGLSAYIIFSSY 829 (983)
Q Consensus 812 ~~~es~ig~~a~~~laa~ 829 (983)
+.+.+|.-.+-++.|.|-
T Consensus 285 GGIr~G~Di~KALALGAd 302 (366)
T PLN02979 285 GGVRRGTDVFKALALGAS 302 (366)
T ss_pred CCcCcHHHHHHHHHcCCC
Confidence 888887777666666553
No 428
>PRK06801 hypothetical protein; Provisional
Probab=75.78 E-value=23 Score=38.60 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=83.3
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHH---cCCCcEEEEEc-----------
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKK---VGHRIELRVDA----------- 708 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~---~g~~~~l~vDa----------- 708 (983)
+||+.-.++-+.+.+ .+++.++.||+.+-+.-.. .+.++.++..+++++. +|-++..-+..
T Consensus 74 ~vpV~lHlDH~~~~e----~i~~Ai~~GftSVm~D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 74 DIPVVLNLDHGLHFE----AVVRALRLGFSSVMFDGST-LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCEEEECCCCCCHH----HHHHHHHhCCcEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 355554554444443 4556677899999997543 3557777777666543 22222111111
Q ss_pred ---CCCC-CHHHHHHHHhhccc--CCC-------ceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcC
Q 041113 709 ---NRNW-TYQEALEFGFLIKD--CDL-------QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAH 775 (983)
Q Consensus 709 ---N~~~-~~~~a~~~~~~l~~--~~i-------~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~ 775 (983)
...+ ++++|.++.++..- +.+ .|=..|-.+++-++++++.+++|+.+.=.--.. .+.+..+++
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~----~e~~~~~i~ 224 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS----DADFRRAIE 224 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC----HHHHHHHHH
Confidence 1124 56999999864321 111 222233225888999999899998765432211 135788888
Q ss_pred CCceEEEEcCCCcCCHHHHH
Q 041113 776 PGIVAIVIKPSVIGGFENAG 795 (983)
Q Consensus 776 ~~~~~i~~k~~~~GGl~~~~ 795 (983)
.|++-||+........++.+
T Consensus 225 ~Gi~KINv~T~~~~a~~~~~ 244 (286)
T PRK06801 225 LGIHKINFYTGMSQAALAAV 244 (286)
T ss_pred cCCcEEEehhHHHHHHHHHH
Confidence 89888888765544444433
No 429
>PRK07064 hypothetical protein; Provisional
Probab=75.66 E-value=12 Score=45.10 Aligned_cols=107 Identities=10% Similarity=-0.034 Sum_probs=73.2
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+.+++++.+|++ |=| +.-.+..+.+|-. .+.|+++|.-+=....+- .+. ....
T Consensus 53 A~~~A~gyar~tg~~~v~~~t~GpG-~~N~~~~i~~A~~--~~~Pvl~i~g~~~~~~~~-------------~~~-~~~~ 115 (544)
T PRK07064 53 AVNMADAHARVSGGLGVALTSTGTG-AGNAAGALVEALT--AGTPLLHITGQIETPYLD-------------QDL-GYIH 115 (544)
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCc-HHHHHHHHHHHHh--cCCCEEEEeCCCCccccc-------------CCC-cccc
Confidence 56688888887766666655 444 4446789999887 899998888642211110 000 0001
Q ss_pred CCCCHHHHHHHcCCceeeeCCHHHHHHHHHhhhc-----cCCCEEEEEEcC
Q 041113 406 HNISIQNLCLAHGLNHVQVKTKVELEEALSMSQH-----LGTDRVIEVESC 451 (983)
Q Consensus 406 ~~~df~~la~a~G~~~~~v~~~~eL~~aL~~a~~-----~~~p~lIeV~~~ 451 (983)
..+|...+.+.+=....+|++++++...+.+|+. .+||+.|++..|
T Consensus 116 ~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 116 EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 2357888888887788999999998877777653 269999999875
No 430
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=75.65 E-value=22 Score=34.81 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred cCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchh--hhhhhhhhccccccccc-------hhhhccC---
Q 041113 85 GVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRK--LLASFLETEQNILFLDH-------LDHALLS--- 152 (983)
Q Consensus 85 ~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~--~kg~~~~~hp~~~~~g~-------~g~~~~~--- 152 (983)
-|++|||=+-+....-..+++.+||+.+|+++=...+..-+.+. .+..+-+.-.-- .+|. +....+.
T Consensus 3 lA~~PVISVNGN~AAL~p~eiveLa~~~~A~iEVNLFyRT~eR~~~I~~~L~~~Ga~~-vlG~~~d~~~~ip~L~~~R~~ 81 (178)
T PF02006_consen 3 LAKHPVISVNGNTAALVPEEIVELAKATGAKIEVNLFYRTEERVEKIAELLREHGAEE-VLGVNPDASERIPGLDHERAK 81 (178)
T ss_pred ccCCCEEEEcccHHHhChHHHHHHHHHhCCCEEEEcccCCHHHHHHHHHHHHHcCCCE-eeccCCcccccCCCCCCccce
Confidence 48999997766543334579999999999999887763211111 112222111100 0111 0001111
Q ss_pred ccccccCCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCCCCCCCCCeeEEEEcCHHHHHHHHHhc
Q 041113 153 ESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKV 222 (983)
Q Consensus 153 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~ 222 (983)
....-+-.||+||+= +.+-.-+.-+... .+++|.||++|-.- ....+++.|+.++-.++..|.+.
T Consensus 82 v~~~GIy~ADVVLVP---LEDGDR~EAL~~m-GK~VIaIDLNPLSR-Tar~AtitIVDni~RA~p~~~~~ 146 (178)
T PF02006_consen 82 VSKEGIYSADVVLVP---LEDGDRTEALVKM-GKTVIAIDLNPLSR-TARTATITIVDNITRAIPNMIEF 146 (178)
T ss_pred ECcccceeccEEEec---cCCCcHHHHHHHc-CCeEEEEeCCCccc-ccccCceeeehhHHHHHHHHHHH
Confidence 111225689999983 3222212222232 45789999998422 23567899998888888777664
No 431
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=75.30 E-value=33 Score=37.09 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=85.4
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCcE-----E------EEEc
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRIE-----L------RVDA 708 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~~-----l------~vDa 708 (983)
+||+.-.++-..+.+. +.+.++.||+.+-+.-.. .+.++.++..+++.+.. |-.+. + ..+.
T Consensus 69 ~VPV~lHLDH~~~~~~----i~~ai~~GftSVMiD~S~-l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 69 SVPVALHLDHGSSFEL----IKRAIRAGFSSVMIDGSH-LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHhCCCEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 3555555554555554 445567899999998665 46778887777665532 11110 0 0011
Q ss_pred CCCC-CHHHHHHHHhhccc----------CCCceee-cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 709 NRNW-TYQEALEFGFLIKD----------CDLQYIE-EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 709 N~~~-~~~~a~~~~~~l~~----------~~i~~iE-eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
...| ++++|.+|.++..- +|. |-. +|--+++-++++++.+++|+.+.=.--... +.++..++.
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~-Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~----e~~~~ai~~ 218 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGA-YKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPD----EQIRKAIKL 218 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccc-cCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCH----HHHHHHHHc
Confidence 1225 79999999986532 122 333 665579999999999999998865544332 468888888
Q ss_pred CceEEEEcCCC
Q 041113 777 GIVAIVIKPSV 787 (983)
Q Consensus 777 ~~~~i~~k~~~ 787 (983)
|+.=+|+....
T Consensus 219 Gi~KiNi~T~l 229 (276)
T cd00947 219 GVCKININTDL 229 (276)
T ss_pred CCeEEEeChHH
Confidence 87667776543
No 432
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=75.18 E-value=40 Score=37.46 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhcCC--CEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEE-EcCCCCCHHHHHHHHhhcccCCCce--
Q 041113 657 VEVASIATTLVEEGF--TAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV-DANRNWTYQEALEFGFLIKDCDLQY-- 731 (983)
Q Consensus 657 ~~~~~~~~~~~~~G~--~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~v-DaN~~~~~~~a~~~~~~l~~~~i~~-- 731 (983)
++..+++.++++.|. ..+-+.+-.+ +...-.+.|+.+|+.+ |+..+++ |.- |.++|..+.+ .|...
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~g-h~~~~~e~I~~ir~~~-p~~~vi~g~V~---t~e~a~~l~~----aGad~i~ 166 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHG-HSDSVINMIQHIKKHL-PETFVIAGNVG---TPEAVRELEN----AGADATK 166 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC-chHHHHHHHHHHHhhC-CCCeEEEEecC---CHHHHHHHHH----cCcCEEE
Confidence 345678999999966 9998877652 4455667799999998 7778887 655 7888776654 33333
Q ss_pred ---------eecCCC-----ChH--HHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 732 ---------IEEPVQ-----NEE--DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 732 ---------iEeP~~-----~~~--~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
+|++.. +|. .++++++...+||.++--+.+..| ..+.+..|++.+.+-
T Consensus 167 vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~D-----i~KaLa~GA~aV~vG 230 (326)
T PRK05458 167 VGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGD-----IAKSIRFGATMVMIG 230 (326)
T ss_pred ECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHH-----HHHHHHhCCCEEEec
Confidence 465542 333 366777777899999999888764 445555688877654
No 433
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=74.86 E-value=24 Score=37.93 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHH----HHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEV----IQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~----v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
.+.+.+.++++++++.|-..+-+-.+. .++++.++ |+++++.+ ++.|.+|....=..+.|++..+.-.=.+=
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~--~~~eE~~r~~~~v~~l~~~~--~~plsIDT~~~~v~eaaL~~~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGT--AVEEEPETMEWLVETVQEVV--DVPLCIDSPNPAAIEAGLKVAKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC--CchhHHHHHHHHHHHHHHhC--CCCEEEeCCCHHHHHHHHHhCCCCCEEEe
Confidence 577889999999999999998877654 34455554 45555444 68899997665555666655321000111
Q ss_pred ceeecCCCChHHHHHHHhhcCCcEEe---CCC-cc-CcCCChHH----HHHhhcCCCc--eEEEEcCCCc--C----CHH
Q 041113 730 QYIEEPVQNEEDIIKYCEESGLPVAL---DET-ID-KFQKDPLN----MLEKYAHPGI--VAIVIKPSVI--G----GFE 792 (983)
Q Consensus 730 ~~iEeP~~~~~~~~~l~~~~~ipIa~---dEs-~~-~~~~~~~~----~~~~~~~~~~--~~i~~k~~~~--G----Gl~ 792 (983)
-+-|+ .. .+.+..+.++.+.|+.+ ++. .. +..+ ..+ .+..+.+.|+ +-+.+||... | +..
T Consensus 98 Is~~~-~~-~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~-~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~ 174 (261)
T PRK07535 98 VSAEG-EK-LEVVLPLVKKYNAPVVALTMDDTGIPKDAED-RLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGP 174 (261)
T ss_pred CCCCC-cc-CHHHHHHHHHhCCCEEEEecCCCCCCCCHHH-HHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHH
Confidence 12222 11 34666777778888763 221 11 1100 111 2233445676 4678898653 2 244
Q ss_pred HHHHHHHHHHHc--CCcEEeCCC
Q 041113 793 NAGLIARWAQRH--GKMAVVSAA 813 (983)
Q Consensus 793 ~~~~~~~~A~~~--gi~~~~~~~ 813 (983)
++++..+..++. |.++.+|-+
T Consensus 175 ~~l~~i~~l~~~~pg~p~l~G~S 197 (261)
T PRK07535 175 EVLETIRRIKELYPKVHTTCGLS 197 (261)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeC
Confidence 556666777765 888876653
No 434
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.57 E-value=6.7 Score=40.19 Aligned_cols=94 Identities=20% Similarity=0.110 Sum_probs=66.6
Q ss_pred CCHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC
Q 041113 712 WTYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV 787 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~ 787 (983)
-+.+++.+.++.|-+-++..+|=++.+ .+.+++++++.+ +-|-.| ++.+. ++++..++.|+++++ -|..
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG-TVl~~-----e~a~~ai~aGA~Fiv-SP~~ 85 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG-TILNA-----KQFEDAAKAGSRFIV-SPGT 85 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE-eCcCH-----HHHHHHHHcCCCEEE-CCCC
Confidence 388999999999999999999999983 344567776654 334333 34443 357778888998865 2322
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEeCCCCchHH
Q 041113 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGL 818 (983)
Q Consensus 788 ~GGl~~~~~~~~~A~~~gi~~~~~~~~es~i 818 (983)
..++++.|+++|+.++.+.+.-|-+
T Consensus 86 ------~~~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 86 ------TQELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred ------CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2458899999999977666654443
No 435
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=74.57 E-value=16 Score=38.95 Aligned_cols=131 Identities=17% Similarity=0.214 Sum_probs=81.8
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCC-CcEEEEEcC-----------CCC---CHHHHHHHHhhcccC
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDAN-----------RNW---TYQEALEFGFLIKDC 727 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~-~~~l~vDaN-----------~~~---~~~~a~~~~~~l~~~ 727 (983)
++++.+.|...+ =+|. ..-.+.+.+..+.+.++. .+.+.+|+. .+| +..+..++++.+++.
T Consensus 86 ~~~~l~~G~~~v--~ig~--~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~ 161 (243)
T cd04731 86 ARRLLRAGADKV--SINS--AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL 161 (243)
T ss_pred HHHHHHcCCceE--EECc--hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC
Confidence 444445687764 4554 344566778888888874 588889965 223 344567777878777
Q ss_pred CCceeec----C---C--CChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC-CceEEEE-cCCCcCCHHHHHH
Q 041113 728 DLQYIEE----P---V--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP-GIVAIVI-KPSVIGGFENAGL 796 (983)
Q Consensus 728 ~i~~iEe----P---~--~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~-~~~~i~~-k~~~~GGl~~~~~ 796 (983)
++.++.= . . .+++-++++++.+++|+.+.=-+.+..| +..+.+. |++.+.+ ..-..|.+ ...+
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~d-----i~~~l~~~g~dgv~vg~al~~~~~-~~~~ 235 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEH-----FVEAFEEGGADAALAASIFHFGEY-TIAE 235 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHHHHHhCCCCEEEEeHHHHcCCC-CHHH
Confidence 7654432 1 1 1467778888888999888777776543 5555553 7876554 44455555 3555
Q ss_pred HHHHHHH
Q 041113 797 IARWAQR 803 (983)
Q Consensus 797 ~~~~A~~ 803 (983)
+.+.+++
T Consensus 236 ~~~~~~~ 242 (243)
T cd04731 236 LKEYLAE 242 (243)
T ss_pred HHHHHhh
Confidence 5555554
No 436
>PRK08185 hypothetical protein; Provisional
Probab=74.55 E-value=44 Score=36.36 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=83.3
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHH---HcCCCcE------------EEEE
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRK---KVGHRIE------------LRVD 707 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~---~~g~~~~------------l~vD 707 (983)
+||+.-.++-+.+.+. ++++++.||+.+-+.-.. .+.++.++..+++.+ ..|-.+. ..++
T Consensus 68 ~vPV~lHLDHg~~~e~----i~~ai~~Gf~SVM~D~S~-l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 68 PVPFVIHLDHGATIED----VMRAIRCGFTSVMIDGSL-LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCEEEECCCCCCHHH----HHHHHHcCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 3555555554555543 556667899999988654 466777777777763 2221111 1111
Q ss_pred cCCC-C-CHHHHHHHHhhc-cc-CCC-----c-eeec---CCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc
Q 041113 708 ANRN-W-TYQEALEFGFLI-KD-CDL-----Q-YIEE---PVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA 774 (983)
Q Consensus 708 aN~~-~-~~~~a~~~~~~l-~~-~~i-----~-~iEe---P~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~ 774 (983)
.+.. + ++++|.++.+.. -+ +-+ . .++. |=-+++-++++++.+++|+.+.=...... +++++.+
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~----e~~~~ai 218 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPD----AEIAESV 218 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCH----HHHHHHH
Confidence 1221 4 899999998764 11 111 1 1123 32268999999999999988765544432 3688888
Q ss_pred CCCceEEEEcCCC
Q 041113 775 HPGIVAIVIKPSV 787 (983)
Q Consensus 775 ~~~~~~i~~k~~~ 787 (983)
..|+.=||+....
T Consensus 219 ~~GI~KiNi~T~l 231 (283)
T PRK08185 219 QLGVGKINISSDM 231 (283)
T ss_pred HCCCeEEEeChHH
Confidence 8898777887654
No 437
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=74.49 E-value=27 Score=39.85 Aligned_cols=113 Identities=16% Similarity=0.043 Sum_probs=84.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceeecCCC-----ChHHHHHHHhh-cCCcEEeCCCccCcCCChHHHHHh
Q 041113 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ-----NEEDIIKYCEE-SGLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 699 g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEeP~~-----~~~~~~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
.|-+.+.+|. .+.++|+++++.+.+++..|+|==++ ..+..+++++. .+.+|-+|=-+.+... . ....
T Consensus 172 ~p~L~vALD~---~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~-~--vv~~ 245 (391)
T PRK13307 172 PPYLQVALDL---PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGN-L--EARM 245 (391)
T ss_pred cceEEEecCC---CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhh-H--HHHH
Confidence 3667788873 57899999999999887779997766 45667888877 5789999998888753 1 1445
Q ss_pred hcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEe-CCCCchHHH
Q 041113 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVV-SAAFESGLG 819 (983)
Q Consensus 773 ~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~-~~~~es~ig 819 (983)
+.+.|+|.+.+-. .+|.....+..+.++++|+.+.+ -.+.++.+.
T Consensus 246 ~a~aGAD~vTVH~--ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e 291 (391)
T PRK13307 246 AADATADAVVISG--LAPISTIEKAIHEAQKTGIYSILDMLNVEDPVK 291 (391)
T ss_pred HHhcCCCEEEEec--cCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHH
Confidence 6677898877664 35666788899999999999877 333344443
No 438
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=74.37 E-value=26 Score=39.16 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhcCCCEEEEeccCC--------CChHHHHHHHHHHHHHcC---CCcEEEEEcCCCCCHHHHHHHHhhc
Q 041113 656 PVEVASIATTLVEEGFTAIKLKVARR--------ADPIKDAEVIQEVRKKVG---HRIELRVDANRNWTYQEALEFGFLI 724 (983)
Q Consensus 656 ~~~~~~~~~~~~~~G~~~~KiKig~~--------~~~~~d~~~v~~vr~~~g---~~~~l~vDaN~~~~~~~a~~~~~~l 724 (983)
.+++.+.++++.+ +...|-+-++.+ .+++.=.+.++++|+.+. .++.+.+=-...++.++..++++.+
T Consensus 147 ~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 5666666666532 467888877653 123344577899998873 2344444444457778888999999
Q ss_pred ccCCCceee
Q 041113 725 KDCDLQYIE 733 (983)
Q Consensus 725 ~~~~i~~iE 733 (983)
++.++.+|.
T Consensus 226 ~~aGad~I~ 234 (327)
T cd04738 226 LEHGVDGII 234 (327)
T ss_pred HHcCCcEEE
Confidence 988888775
No 439
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=74.12 E-value=1.1e+02 Score=33.92 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKK-VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~-~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
.++++-.++++......+..+-+-+|. -++|.++++++-++ .|.| .|.+|.-++++... +
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~---~~~d~er~~~L~~~~~g~D-~iviD~AhGhs~~~-i-------------- 139 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGT---SDADFEKTKQILALSPALN-FICIDVANGYSEHF-V-------------- 139 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecC---CHHHHHHHHHHHhcCCCCC-EEEEECCCCcHHHH-H--------------
Confidence 478888888887765555666677775 35889999999985 4556 47789888887543 2
Q ss_pred ecCCCChHHHHHHHhhc-CCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCC-------C------cCCHHHHHHHH
Q 041113 733 EEPVQNEEDIIKYCEES-GLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS-------V------IGGFENAGLIA 798 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~-------~------~GGl~~~~~~~ 798 (983)
+-++++++.. .++|.+|.-... +....+++.|+|.+.+-++ + ..=++...+.+
T Consensus 140 -------~~ik~ik~~~P~~~vIaGNV~T~------e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 140 -------QFVAKAREAWPDKTICAGNVVTG------EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred -------HHHHHHHHhCCCCcEEEecccCH------HHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 2233444443 367777765433 2456677778887653221 1 11378889999
Q ss_pred HHHHHcCCcEEeCCCC
Q 041113 799 RWAQRHGKMAVVSAAF 814 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~~ 814 (983)
+.|+.+|++++.-+..
T Consensus 207 ~~a~~~gvpiIADGGi 222 (346)
T PRK05096 207 DAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHHHHcCCCEEecCCc
Confidence 9999999997765544
No 440
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=73.87 E-value=53 Score=33.79 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++|+....++.+++.|++++.|-... ..-.+.|+++++.++ +..+=|.--+|++|+.+.. +.|-.|+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~s----p~a~e~I~~l~~~~p---~~lIGAGTVL~~~q~~~a~----~aGa~fi 89 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRT----PAALEAIRALAKEFP---EALIGAGTVLNPEQARQAI----AAGAQFI 89 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCC----CCHHHHHHHHHHhCc---ccEEccccccCHHHHHHHH----HcCCCEE
Confidence 4689999999999999999999998864 234567899999995 6778888888999887654 4677888
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcC-CCcCCHH
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP-SVIGGFE 792 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~-~~~GGl~ 792 (983)
=-|-- ..++.+.....++|++-|=.-.+ .+....+.|++.+.+=| .-+||..
T Consensus 90 VsP~~-~~ev~~~a~~~~ip~~PG~~Tpt-------Ei~~Ale~G~~~lK~FPa~~~Gg~~ 142 (211)
T COG0800 90 VSPGL-NPEVAKAANRYGIPYIPGVATPT-------EIMAALELGASALKFFPAEVVGGPA 142 (211)
T ss_pred ECCCC-CHHHHHHHHhCCCcccCCCCCHH-------HHHHHHHcChhheeecCccccCcHH
Confidence 88877 57777788889999998865443 24445567877766544 4567744
No 441
>PRK00208 thiG thiazole synthase; Reviewed
Probab=73.82 E-value=35 Score=35.92 Aligned_cols=136 Identities=17% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCC--hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 653 NKSPVEVASIATTLVE-EGFTAIKLKVARRAD--PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~--~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
..+.+|.+..++-.++ .|-.-||+.|=.... ..+-.+.|++.++.+.+++..+ +-+.=|+.+| ++|++++.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl--pyc~~d~~~a----k~l~~~G~ 145 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL--PYCTDDPVLA----KRLEEAGC 145 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE--EEeCCCHHHH----HHHHHcCC
Confidence 4577887777777776 477899999853111 2234667888887776666655 1122245544 44555677
Q ss_pred ceeecCCC----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHH
Q 041113 730 QYIEEPVQ----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIAR 799 (983)
Q Consensus 730 ~~iEeP~~----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~ 799 (983)
..+ -|+. +++.++.+++..++||..|=-+.+..| ....++.|+|.+.+- .+|+.+..-..
T Consensus 146 ~~v-mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tped-----a~~AmelGAdgVlV~----SAItka~dP~~ 215 (250)
T PRK00208 146 AAV-MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSD-----AAQAMELGADAVLLN----TAIAVAGDPVA 215 (250)
T ss_pred CEe-CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHH-----HHHHHHcCCCEEEEC----hHhhCCCCHHH
Confidence 777 4421 567778888888999999988888754 666777898887654 33444333344
Q ss_pred HHHHc
Q 041113 800 WAQRH 804 (983)
Q Consensus 800 ~A~~~ 804 (983)
+|+++
T Consensus 216 ma~af 220 (250)
T PRK00208 216 MARAF 220 (250)
T ss_pred HHHHH
Confidence 44443
No 442
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=73.64 E-value=23 Score=35.59 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=62.4
Q ss_pred hHHHHHhhhhccC-ceEEEEEccchhhh-----ccchHH-HHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCcccccc
Q 041113 328 LLSTAIGFAVGCN-KHVLCVVGDISFLH-----DTNGLA-ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQ 400 (983)
Q Consensus 328 ~lpaaiGaalA~~-~~vv~i~GDGsf~~-----~~~eL~-Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~ 400 (983)
.++.|.|.+++-+ ++++ ..-=+.|+. ....+. .+.. .+.|+. |+..- +++.-.
T Consensus 60 ~vg~a~GlA~~G~~~~~~-~~~f~~F~~~~q~r~~~~~~~~~~~--~~~~v~-v~~~~-g~~~~~--------------- 119 (178)
T PF02779_consen 60 MVGMAAGLALAGGLRPPV-ESTFADFLTPAQIRAFDQIRNDMAY--GQLPVP-VGTRA-GLGYGG--------------- 119 (178)
T ss_dssp HHHHHHHHHHHSSSEEEE-EEEEGGGGGGGHHHHHHHHHHHHHH--HTS-EE-EEEEE-SGGGST---------------
T ss_pred ccceeeeeeeccccccee-Eeeccccccccchhhhhhhhhhhhc--ccceec-ceeec-Cccccc---------------
Confidence 5788888887741 3333 233344554 222332 2333 688988 54443 332110
Q ss_pred ccccCCCCCHHHHHHHc-CCceeeeCCHHHHHHHHHhhhc--cCCCEEEEEEc
Q 041113 401 YFYTTHNISIQNLCLAH-GLNHVQVKTKVELEEALSMSQH--LGTDRVIEVES 450 (983)
Q Consensus 401 ~~~~~~~~df~~la~a~-G~~~~~v~~~~eL~~aL~~a~~--~~~p~lIeV~~ 450 (983)
...+.+..+...+-+++ |+..+...+..|++..++.+++ .++|++|-..-
T Consensus 120 ~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 120 DGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp TGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 01233456667777776 8888999999999999999998 68999987643
No 443
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=73.51 E-value=36 Score=35.81 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHhhh-cCCCEEEEeccCCCC--hHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 653 NKSPVEVASIATTLVE-EGFTAIKLKVARRAD--PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~-~G~~~~KiKig~~~~--~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
..+.+|.+..++-.++ .|-.-||+.|=.... ..+-.+.|++.++.+.+++..+- -+.=|+..| ++|++.+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlp--yc~dd~~~a----r~l~~~G~ 145 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLP--YCTDDPVLA----KRLEDAGC 145 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEE--EeCCCHHHH----HHHHHcCC
Confidence 4577777777777776 478899999854111 12346778888877766666551 122244444 44555677
Q ss_pred ceeecCCC----------ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 730 QYIEEPVQ----------NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 730 ~~iEeP~~----------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
..+ -|+. +++-++.+++..++||..|=-+.+..| .....+.|+|.+.+-
T Consensus 146 ~~v-mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tped-----a~~AmelGAdgVlV~ 204 (248)
T cd04728 146 AAV-MPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSD-----AAQAMELGADAVLLN 204 (248)
T ss_pred CEe-CCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHH-----HHHHHHcCCCEEEEC
Confidence 777 4421 567778888888899999988888754 666777898887654
No 444
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=73.13 E-value=24 Score=41.32 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=62.2
Q ss_pred hHHHHHhhhhccCceEEEEEccchhhhccchHHHHHh-------h---ccCCCEEEEEEeCCCCccccCCCCCCCCCccc
Q 041113 328 LLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQ-------R---MKRKPILMLVINNHGGAIFSLLPIADRTEPRI 397 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~-------~---~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~ 397 (983)
.++.|.|++++--+|++.+.. +.|..+.+..+.. + ..++|++++ .-|+++.-
T Consensus 201 ~vg~AaGlA~~G~rPiv~~~~---~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~-g~~G~~~~-------------- 262 (464)
T PRK11892 201 FAGIGVGAAFAGLKPIVEFMT---FNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFR-GPNGAAAR-------------- 262 (464)
T ss_pred HHHHHHHHHhCCCEEEEEEeh---HHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEE-ecCCCCCC--------------
Confidence 478888888764566665432 1222232222220 0 267998776 34554321
Q ss_pred cccccccCCCCCHHHHHHHc-CCceeeeCCHHHHHHHHHhhhccCCCEEE
Q 041113 398 LDQYFYTTHNISIQNLCLAH-GLNHVQVKTKVELEEALSMSQHLGTDRVI 446 (983)
Q Consensus 398 ~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~eL~~aL~~a~~~~~p~lI 446 (983)
.+..|..++..+.+.+ |..-+...+..|++..|+.+++.++|++|
T Consensus 263 ----~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ai~~~~Pv~i 308 (464)
T PRK11892 263 ----VAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIF 308 (464)
T ss_pred ----CCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHHhhCCCcEEE
Confidence 1223455666777776 78888999999999999999988899886
No 445
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=72.83 E-value=6.6 Score=36.91 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=64.8
Q ss_pred HHHHHhhhhccCceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCC
Q 041113 329 LSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNI 408 (983)
Q Consensus 329 lpaaiGaalA~~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (983)
++.+-||.+|-+++.+.+ =..|..-+++.|..+-. -|++|+.+++-.-+-++.. ++- | .+-.-
T Consensus 55 ~GIcAGa~lAGkk~ailm-QnsGlGNsiNal~SL~~-ty~iPl~ml~ShRG~~~E~--i~A---Q----------VpmGr 117 (172)
T COG4032 55 VGICAGAYLAGKKPAILM-QNSGLGNSINALASLYV-TYKIPLLMLASHRGVLKEG--IEA---Q----------VPMGR 117 (172)
T ss_pred eeeehhhhhcCCCcEEEE-eccCcchHHHHHHHHHH-HhccchhhhhhccchhhcC--Ccc---c----------cccch
Confidence 345668888865555554 45556677788877764 4899998776555544321 110 0 01122
Q ss_pred CHHHHHHHcCCceeeeCCHHHHHHHHH----hhhccCCCEEEE
Q 041113 409 SIQNLCLAHGLNHVQVKTKVELEEALS----MSQHLGTDRVIE 447 (983)
Q Consensus 409 df~~la~a~G~~~~~v~~~~eL~~aL~----~a~~~~~p~lIe 447 (983)
-..++-+.++++.+++.+++|-.+.++ .+++..+|+.+=
T Consensus 118 ~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vl 160 (172)
T COG4032 118 ALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVL 160 (172)
T ss_pred hhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 356788999999999999999444444 455667776543
No 446
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=72.72 E-value=39 Score=35.32 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHhhhcCCCEEEEeccCCCCh--HHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee------
Q 041113 661 SIATTLVEEGFTAIKLKVARRADP--IKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI------ 732 (983)
Q Consensus 661 ~~~~~~~~~G~~~~KiKig~~~~~--~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i------ 732 (983)
++++++++.|...+-+-......+ +...+.++.+|+. +++.+.++.+ +.+++.+. .+.+..|+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~~v~---t~ee~~~a----~~~G~d~i~~~~~g 149 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMADCS---TLEEGLAA----QKLGFDFIGTTLSG 149 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEEeCC---CHHHHHHH----HHcCCCEEEcCCce
Confidence 456777788999776644320012 3445677777765 6788998865 67776543 33333333
Q ss_pred -ec----CCC-ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEc
Q 041113 733 -EE----PVQ-NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIK 784 (983)
Q Consensus 733 -Ee----P~~-~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k 784 (983)
+. +.. +.+-++++++..++||...=-+.+.. .+..+.+.|+|.+.+=
T Consensus 150 ~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~-----~~~~~l~~GadgV~iG 202 (221)
T PRK01130 150 YTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE-----QAKKALELGAHAVVVG 202 (221)
T ss_pred eecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH-----HHHHHHHCCCCEEEEc
Confidence 21 111 46667888888899999877776654 3566666778887654
No 447
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.63 E-value=43 Score=40.61 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=62.2
Q ss_pred ccchhhHHHHHHHHhcC--CceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh
Q 041113 70 SYTYCQMAEVLELVQGV--NKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~A--krPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
...+++++.+++.|++. ++.+++.++.......-...+|+..+|.+-+.... .... ..-....+. .+|
T Consensus 81 ISWDEAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s-~~C~----~~~~~al~~-----~~G 150 (574)
T cd02767 81 ISWDEAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCS-NMCH----EPSSVGLKK-----SIG 150 (574)
T ss_pred ecHHHHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCC-CCcc----hHHHhHHHH-----hcC
Confidence 46678899999988876 44555544433223334677899999987654321 1100 000000011 111
Q ss_pred hhccCccccccCCCCEEEEeCCccccHHH--HHHHHhc--CCceEEEEcCCCC
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSKRI--SQMIEEC--FPCTYILVDNHPC 196 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~~~--~~~~~~~--~~~~~i~id~d~~ 196 (983)
..........+.+||+||++|+.+..... ..++... ...++|.||+..+
T Consensus 151 ~~~~t~~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 151 VGKGTVSLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred CCCCCCCHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 11111122346799999999998754332 2222222 2347888887654
No 448
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=72.49 E-value=77 Score=34.56 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=80.5
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHH---HcCCCcEEEEEcC-----------
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRK---KVGHRIELRVDAN----------- 709 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~---~~g~~~~l~vDaN----------- 709 (983)
+|+.-.++...+. +.+++.++.||+.+-+.--. .+.++.+++.+.+++ .+|-++..-+..-
T Consensus 75 vpv~lhlDH~~~~----e~i~~ai~~Gf~sVmid~s~-l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~ 149 (282)
T TIGR01859 75 VPVALHLDHGSSY----ESCIKAIKAGFSSVMIDGSH-LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKE 149 (282)
T ss_pred CeEEEECCCCCCH----HHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccc
Confidence 4554444333343 35566677899999887654 355667777777764 3443333333221
Q ss_pred CCC-CHHHHHHHHhhcccCCCceee------------cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCC
Q 041113 710 RNW-TYQEALEFGFLIKDCDLQYIE------------EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHP 776 (983)
Q Consensus 710 ~~~-~~~~a~~~~~~l~~~~i~~iE------------eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~ 776 (983)
..+ ++++|.++.++. ++.|+= .|--+++-++++++.+++|+.+-=.-. .. .+.+..+++.
T Consensus 150 ~~~t~~eea~~f~~~t---gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSG-i~---~e~i~~~i~~ 222 (282)
T TIGR01859 150 AELADPDEAEQFVKET---GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASG-IP---EEQIKKAIKL 222 (282)
T ss_pred cccCCHHHHHHHHHHH---CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCC-CC---HHHHHHHHHc
Confidence 224 789999888633 222222 122268899999999999987654211 11 1357778888
Q ss_pred CceEEEEcCCCc
Q 041113 777 GIVAIVIKPSVI 788 (983)
Q Consensus 777 ~~~~i~~k~~~~ 788 (983)
|++-+|+.....
T Consensus 223 Gi~kiNv~T~l~ 234 (282)
T TIGR01859 223 GIAKINIDTDCR 234 (282)
T ss_pred CCCEEEECcHHH
Confidence 998889876553
No 449
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.16 E-value=54 Score=39.20 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=61.6
Q ss_pred ccchhhHHHHHHHHhcC------CceEEEEccCCChhHHHHHHHHHHhcCC-cEEeccccCccchhhhhhhhhhcccccc
Q 041113 70 SYTYCQMAEVLELVQGV------NKGLLLVGAVHNEDEIWAVLHLARHIRW-PVVADILSGLRLRKLLASFLETEQNILF 142 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~A------krPvIl~G~g~~~~~~~~l~~lae~l~~-Pv~~t~~sg~~~~~~kg~~~~~hp~~~~ 142 (983)
...+++++.+++.|++. ++..++.|.+........+.+|+...+. +.+.... .. ...+...-+
T Consensus 69 isWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~e~~~~~~~~~~~~g~s~~~~~~~-~~------c~~~~~~~~--- 138 (512)
T cd02753 69 ASWDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTNEENYLFQKLARAVGGTNNVDHCA-RL------CHSPTVAGL--- 138 (512)
T ss_pred ecHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCcHHHHHHHHHHHHhcCCCccCCCc-cc------ccchhhHHH---
Confidence 34578899999988753 5566766665443333467789887765 3333211 00 000000000
Q ss_pred ccchhhhccCccccccCCCCEEEEeCCccccHHHH--HHHHh--cCCceEEEEcCCCCCC
Q 041113 143 LDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS--QMIEE--CFPCTYILVDNHPCRH 198 (983)
Q Consensus 143 ~g~~g~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~--~~~~~--~~~~~~i~id~d~~~~ 198 (983)
.-.+|..........+.++|+||++|+.+...... .+... -...++|.||+.....
T Consensus 139 ~~~~G~~~~~~~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~t 198 (512)
T cd02753 139 AETLGSGAMTNSIADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTEL 198 (512)
T ss_pred HhhcCCCCCCCCHHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccc
Confidence 00111101112233568999999999987443321 22221 1234688888766544
No 450
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=71.96 E-value=22 Score=38.23 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=55.3
Q ss_pred eEEEEEccchhhhc--cc-h-HHHHHhhccCCCEEEEEEeCC--CCccccCCCCCCCCCccccccccccCCCCCHHHHHH
Q 041113 342 HVLCVVGDISFLHD--TN-G-LAILKQRMKRKPILMLVINNH--GGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCL 415 (983)
Q Consensus 342 ~vv~i~GDGsf~~~--~~-e-L~Ta~~~~~~lpv~iiV~NN~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~ 415 (983)
+++.|+-||...++ .+ . +.-+. +.++-+.+|+++|. +-+|+.+.. .. |.++........-+
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~--e~~i~l~~I~ld~~~~~~SI~d~~~-------~~----~~~~~~~~l~~Yl~ 232 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAR--EQNVFVVFIIIDNPDNKQSILDIKV-------VS----FKNDKSGVITPYLD 232 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHH--HcCCeEEEEEEcCCCCCCCcccccc-------cc----cCCCCccHHHHHHh
Confidence 89999999995544 33 2 22233 36899999999986 444553310 01 11222225677888
Q ss_pred HcCCcee-eeCCHHHHHHHHHhhh
Q 041113 416 AHGLNHV-QVKTKVELEEALSMSQ 438 (983)
Q Consensus 416 a~G~~~~-~v~~~~eL~~aL~~a~ 438 (983)
.|+.+|+ .|.+.++|.+.|..++
T Consensus 233 ~fpfpYy~~~~~~~~lp~~l~~~l 256 (266)
T cd01460 233 EFPFPYYVIVRDLNQLPSVLSDAL 256 (266)
T ss_pred cCCCCeEEEecChhHhHHHHHHHH
Confidence 9999765 6889999999888765
No 451
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=71.92 E-value=1.4e+02 Score=34.81 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=82.5
Q ss_pred ecCCCCHHHHHHHHHHh-----hhcC----CCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHH
Q 041113 650 IDSNKSPVEVASIATTL-----VEEG----FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720 (983)
Q Consensus 650 ~~~~~~~~~~~~~~~~~-----~~~G----~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~ 720 (983)
+....+.+++.+.++.+ ...| ...+=++... .+++.=.+.|+++++.+ ++.|.||. ++++.+.+-
T Consensus 98 I~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s-~dp~~v~~~Vk~V~~~~--dvPLSIDT---~dpevleaA 171 (450)
T PRK04165 98 VSDTMDDEEIDARLKKINNFQFERVGEILKLDMVALRNAS-GDPEKFAKAVKKVAETT--DLPLILCS---EDPAVLKAA 171 (450)
T ss_pred EeCCCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC-CCHHHHHHHHHHHHHhc--CCCEEEeC---CCHHHHHHH
Confidence 33345667788887777 3345 5565565543 25665567788888765 78899997 788877777
Q ss_pred HhhcccC-CC-ceeecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHH
Q 041113 721 GFLIKDC-DL-QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGL 796 (983)
Q Consensus 721 ~~~l~~~-~i-~~iEeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~ 796 (983)
++...+. ++ .-+.+ .+++.+..+....+.|+.+.-.. +. ...+....+.+.|+..+++||.- ||+..++.
T Consensus 172 leagad~~plI~Sat~--dN~~~m~~la~~yg~pvVv~~~d--l~-~L~~lv~~~~~~GI~dIILDPg~-ggf~ksl~ 243 (450)
T PRK04165 172 LEVVADRKPLLYAATK--ENYEEMAELAKEYNCPLVVKAPN--LE-ELKELVEKLQAAGIKDLVLDPGT-ENIKETLD 243 (450)
T ss_pred HHhcCCCCceEEecCc--chHHHHHHHHHHcCCcEEEEchh--HH-HHHHHHHHHHHcCCCcEEECCCC-chhhhhHH
Confidence 7766542 22 22221 25677777788888887773221 11 01123334455677778999977 54555443
No 452
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.64 E-value=13 Score=45.56 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=64.7
Q ss_pred ccchhhHHHHHHHHhcCC---------------ce--EEEEccCCC-hhHHHHHHHHHHhcCCcEEeccccCccchhhhh
Q 041113 70 SYTYCQMAEVLELVQGVN---------------KG--LLLVGAVHN-EDEIWAVLHLARHIRWPVVADILSGLRLRKLLA 131 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~Ak---------------rP--vIl~G~g~~-~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg 131 (983)
....++++.+++.|++.+ +| +.+.|++.. ....-.+.+|+..+|.+.+... +.+.. +
T Consensus 71 iSWdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~----~ 145 (649)
T cd02752 71 ISWDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUH----S 145 (649)
T ss_pred eCHHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhh----h
Confidence 345778999998887654 33 455555433 3334578899999998776543 11100 0
Q ss_pred hhhhhccccccccchhhhccCccccccCCCCEEEEeCCccccHHH--HHHHHhc--C-CceEEEEcCCCCCC
Q 041113 132 SFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRI--SQMIEEC--F-PCTYILVDNHPCRH 198 (983)
Q Consensus 132 ~~~~~hp~~~~~g~~g~~~~~~~~~~~~~aDlvl~iG~~~~~~~~--~~~~~~~--~-~~~~i~id~d~~~~ 198 (983)
..-..... .+|..........+++||+||++|+...+... ..|.... . ..++|+||......
T Consensus 146 ~tv~~l~~-----~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T 212 (649)
T cd02752 146 PTVAGLAN-----TFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT 212 (649)
T ss_pred HHHHHHHh-----hcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence 00000000 11111111122356899999999998754332 2333211 2 34789999866544
No 453
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=71.23 E-value=1.2e+02 Score=34.37 Aligned_cols=84 Identities=8% Similarity=0.091 Sum_probs=58.2
Q ss_pred ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCC------HHHHHHHHHHHHHc--CCcEE
Q 041113 738 NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG------FENAGLIARWAQRH--GKMAV 809 (983)
Q Consensus 738 ~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GG------l~~~~~~~~~A~~~--gi~~~ 809 (983)
+|++++.|++.+++||..-|-.. . +....+.+.|+|.|.+.- .|| ++...-+.+++++. .++++
T Consensus 212 tW~di~wlr~~~~~PiivKgV~~-~-----~dA~~a~~~Gvd~I~Vsn--hGGrqld~~~~t~~~L~ei~~av~~~~~vi 283 (367)
T PLN02493 212 SWKDVQWLQTITKLPILVKGVLT-G-----EDARIAIQAGAAGIIVSN--HGARQLDYVPATISALEEVVKATQGRIPVF 283 (367)
T ss_pred CHHHHHHHHhccCCCEEeecCCC-H-----HHHHHHHHcCCCEEEECC--CCCCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 59999999999999999999853 2 246677788998876543 233 23344444454543 38888
Q ss_pred eCCCCchHHHHHHHHHHHhh
Q 041113 810 VSAAFESGLGLSAYIIFSSY 829 (983)
Q Consensus 810 ~~~~~es~ig~~a~~~laa~ 829 (983)
+.+.+.+|.-..-++.|.|.
T Consensus 284 ~dGGIr~G~Dv~KALALGA~ 303 (367)
T PLN02493 284 LDGGVRRGTDVFKALALGAS 303 (367)
T ss_pred EeCCcCcHHHHHHHHHcCCC
Confidence 88888887777666666553
No 454
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.17 E-value=47 Score=39.45 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=85.1
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEE-EcCCCCCHHHHHHHH
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV-DANRNWTYQEALEFG 721 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~v-DaN~~~~~~~a~~~~ 721 (983)
++.+.+.++ .-.+..++++.+++.|...+=+..... ....-++.|+.||+.+ |+..|++ |. -|.++|.+..
T Consensus 236 ~l~vgaavg---~~~~~~~r~~~l~~ag~d~i~iD~~~g-~~~~~~~~i~~ik~~~-p~~~vi~g~v---~t~e~a~~a~ 307 (505)
T PLN02274 236 KLLVGAAIG---TRESDKERLEHLVKAGVDVVVLDSSQG-DSIYQLEMIKYIKKTY-PELDVIGGNV---VTMYQAQNLI 307 (505)
T ss_pred CEEEEEEEc---CCccHHHHHHHHHHcCCCEEEEeCCCC-CcHHHHHHHHHHHHhC-CCCcEEEecC---CCHHHHHHHH
Confidence 455555552 123346788999999999999988652 3344567899999988 6777764 43 4677776655
Q ss_pred hhcccCCCcee-----------e-------cCCC-ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEE
Q 041113 722 FLIKDCDLQYI-----------E-------EPVQ-NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782 (983)
Q Consensus 722 ~~l~~~~i~~i-----------E-------eP~~-~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~ 782 (983)
+ .+...| - .|.. ....+.++.+..++||.+|--+.+..| +.+.+..|++.++
T Consensus 308 ~----aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~d-----i~kAla~GA~~V~ 378 (505)
T PLN02274 308 Q----AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGH-----IVKALTLGASTVM 378 (505)
T ss_pred H----cCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHH-----HHHHHHcCCCEEE
Confidence 4 333333 1 1221 355677888888999999999998754 5556667888877
Q ss_pred EcCCC
Q 041113 783 IKPSV 787 (983)
Q Consensus 783 ~k~~~ 787 (983)
+--..
T Consensus 379 vGs~~ 383 (505)
T PLN02274 379 MGSFL 383 (505)
T ss_pred Echhh
Confidence 64433
No 455
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=70.98 E-value=44 Score=37.30 Aligned_cols=154 Identities=16% Similarity=0.233 Sum_probs=82.9
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-CCh--------HHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-ADP--------IKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~--------~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
+|+..++. ..++++..+.++...+.|+..+-+.++.. .++ +.-.+.++++|+.+. +.+.+=-...++
T Consensus 100 ~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~--iPv~vKl~p~~~- 175 (325)
T cd04739 100 IPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT--IPVAVKLSPFFS- 175 (325)
T ss_pred CeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC--CCEEEEcCCCcc-
Confidence 34555553 45678888888888788999999988741 111 112477888888763 444444333232
Q ss_pred HHHHHHHhhcccCCCceeec---------------CCC------------ChHHHHHHHhhcCCcEEeCCCccCcCCChH
Q 041113 715 QEALEFGFLIKDCDLQYIEE---------------PVQ------------NEEDIIKYCEESGLPVALDETIDKFQKDPL 767 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~iEe---------------P~~------------~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~ 767 (983)
+...+++.+++.++..|-- |.. ..+-.+++++..++||.+.=-+.+..|
T Consensus 176 -~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D--- 251 (325)
T cd04739 176 -ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED--- 251 (325)
T ss_pred -CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH---
Confidence 4445555555444322210 000 012234556666788877666666543
Q ss_pred HHHHhhcCCCceEEEEcCCCcC-CHHHHHH----HHHHHHHcCCc
Q 041113 768 NMLEKYAHPGIVAIVIKPSVIG-GFENAGL----IARWAQRHGKM 807 (983)
Q Consensus 768 ~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~----~~~~A~~~gi~ 807 (983)
..+.+..|++.+++-....- |..-..+ +.++.+++|++
T Consensus 252 --a~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 252 --VVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred --HHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 33333467777776543322 4433333 33444455554
No 456
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=70.89 E-value=48 Score=37.15 Aligned_cols=84 Identities=13% Similarity=0.197 Sum_probs=52.3
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC--------Ch-HHHHHHHHHHHHHcCCCcEEEEEcCCCCCH
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA--------DP-IKDAEVIQEVRKKVGHRIELRVDANRNWTY 714 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~--------~~-~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~ 714 (983)
+|+.+++. ..++++..+.++.+.+.|+..+-+.++.+. +. +.-.+.++++|+.+ ++.+.+=-+..+
T Consensus 102 ~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p~~-- 176 (334)
T PRK07565 102 IPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPVAVKLSPYF-- 176 (334)
T ss_pred CcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcEEEEeCCCc--
Confidence 45555553 356788888888887889999999765310 11 12346778888876 355555433333
Q ss_pred HHHHHHHhhcccCCCcee
Q 041113 715 QEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 715 ~~a~~~~~~l~~~~i~~i 732 (983)
.+..++++.+++.++..|
T Consensus 177 ~~~~~~a~~l~~~G~dgI 194 (334)
T PRK07565 177 SNLANMAKRLDAAGADGL 194 (334)
T ss_pred hhHHHHHHHHHHcCCCeE
Confidence 345566676777665544
No 457
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=70.85 E-value=3.8 Score=43.10 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=33.4
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPG 974 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G 974 (983)
=|.|+|+|||......|..++.+++.+ |=|+||++-.
T Consensus 46 yPVilF~HG~~l~ns~Ys~lL~HIASHGfIVVAPQl~~ 83 (307)
T PF07224_consen 46 YPVILFLHGFNLYNSFYSQLLAHIASHGFIVVAPQLYT 83 (307)
T ss_pred ccEEEEeechhhhhHHHHHHHHHHhhcCeEEEechhhc
Confidence 478999999999999999999999876 9999999865
No 458
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=70.70 E-value=15 Score=40.27 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHhcCCceEEEEccCCChh-----HHH----HHHHHHHhcCCcEEeccc-cCccc----------hhhhh
Q 041113 72 TYCQMAEVLELVQGVNKGLLLVGAVHNED-----EIW----AVLHLARHIRWPVVADIL-SGLRL----------RKLLA 131 (983)
Q Consensus 72 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~~-----~~~----~l~~lae~l~~Pv~~t~~-sg~~~----------~~~kg 131 (983)
..+.+.++++.+++|+-.+|.+|-|..++ ..+ .+.+|=|...+-++.--. +.+++ .+..=
T Consensus 231 p~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~v 310 (429)
T COG1029 231 PIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFAV 310 (429)
T ss_pred CHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCceee
Confidence 35678999999999999999999875422 123 333444444443322110 00000 00000
Q ss_pred hhhhhccccccccchhhhccCcccccc--CCCCEEEEeCCccccHHHHHHHHhcCCceEEEEcCCCC
Q 041113 132 SFLETEQNILFLDHLDHALLSESVKDW--IQFDVIIQIGSRITSKRISQMIEECFPCTYILVDNHPC 196 (983)
Q Consensus 132 ~~~~~hp~~~~~g~~g~~~~~~~~~~~--~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 196 (983)
-|...+|.| .-|-+ .++..+ +++|..|++|+.+.......-...+...++|+||+.+.
T Consensus 311 dF~rG~pry-nPgE~------s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 311 DFSRGYPRY-NPGEF------SAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred ecccCCcCC-Ccccc------cHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 133333432 11111 223344 58999999999986544444445566678999998774
No 459
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=70.67 E-value=17 Score=42.19 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=34.6
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCc
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWP 115 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~P 115 (983)
...+++++.+++.|+++++++++.|+.........+.+|++.+|..
T Consensus 60 isWdeAl~~ia~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~~~g~~ 105 (421)
T TIGR03129 60 VSYEEAIEKAAEILKNAKRPLIYGWSSTSCEAQRAGLELAEKLGAV 105 (421)
T ss_pred CChHHHHHHHHHHHHhhcCCeEEEcccCCHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999877655544333345778999998874
No 460
>COG0400 Predicted esterase [General function prediction only]
Probab=70.51 E-value=4.3 Score=41.90 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=27.8
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCCCEEEEE
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISI 970 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~~~vi~~ 970 (983)
.|.|||+||+|++...+-+....+..+++++.+
T Consensus 18 ~~~iilLHG~Ggde~~~~~~~~~~~P~~~~is~ 50 (207)
T COG0400 18 APLLILLHGLGGDELDLVPLPELILPNATLVSP 50 (207)
T ss_pred CcEEEEEecCCCChhhhhhhhhhcCCCCeEEcC
Confidence 678999999999999999977777777777765
No 461
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=70.21 E-value=17 Score=42.61 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=74.1
Q ss_pred cCCCcEEEEEc--CCC-CCHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhh-----cCCcEEeCCCccCcCCCh
Q 041113 698 VGHRIELRVDA--NRN-WTYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEE-----SGLPVALDETIDKFQKDP 766 (983)
Q Consensus 698 ~g~~~~l~vDa--N~~-~~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~-----~~ipIa~dEs~~~~~~~~ 766 (983)
+|.+-.++|-. |.. -+.+..++-+.+|++.|-+.+-=-+++ .+.+..++++ +.+|+.+|=+..-.
T Consensus 25 iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~---- 100 (606)
T PRK00694 25 VGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQ---- 100 (606)
T ss_pred ECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChH----
Confidence 44455555442 111 244445555556666666666666663 3455666666 89999999875431
Q ss_pred HHHHHhhcCCCceEEEEcCCCcCC----------------------HHHHHHHHHHHHHcCCcEEeCCCCch
Q 041113 767 LNMLEKYAHPGIVAIVIKPSVIGG----------------------FENAGLIARWAQRHGKMAVVSAAFES 816 (983)
Q Consensus 767 ~~~~~~~~~~~~~~i~~k~~~~GG----------------------l~~~~~~~~~A~~~gi~~~~~~~~es 816 (983)
.....++ .++-+.|.|+-.|. -.....+++.|+++|+++-+|-+.+|
T Consensus 101 --~A~~a~~-~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GS 169 (606)
T PRK00694 101 --AAMHVAD-FVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGS 169 (606)
T ss_pred --HHHHHHH-hcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcC
Confidence 1222233 27789999999988 57899999999999999988877654
No 462
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=69.69 E-value=6.5 Score=40.69 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=35.5
Q ss_pred cccCCCCEEEEeCCccccHHHHHHHHhc--CCceEEEEcCCCCCCCCCCCeeEEEEc
Q 041113 156 KDWIQFDVIIQIGSRITSKRISQMIEEC--FPCTYILVDNHPCRHDPSHSVTHRIQS 210 (983)
Q Consensus 156 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~ 210 (983)
..+.+||++|++|+++.-.......... ...++|.|+.++...+.. .++.+.+
T Consensus 151 ~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~--~d~~~~~ 205 (206)
T cd01410 151 AAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKL--ADLVIHG 205 (206)
T ss_pred HHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCcc--ccEEEeC
Confidence 4457899999999998766655444322 234678899988766543 4555544
No 463
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=69.15 E-value=11 Score=38.51 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=65.7
Q ss_pred CHHHHHHHHhhcccCCCceeecCCCC---hHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCc
Q 041113 713 TYQEALEFGFLIKDCDLQYIEEPVQN---EEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVI 788 (983)
Q Consensus 713 ~~~~a~~~~~~l~~~~i~~iEeP~~~---~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~ 788 (983)
++++|+.+++.|-+-|+.-||=|+.+ .+.++++++..+ +-|.+|- +.+. +++..+++.|+++++ -|+
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT-VL~~-----~q~~~a~~aGa~fiV-sP~-- 93 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGT-VLNP-----EQARQAIAAGAQFIV-SPG-- 93 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEcccc-ccCH-----HHHHHHHHcCCCEEE-CCC--
Confidence 78999999999999999999999982 456688887766 4444443 3333 357778888988754 222
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeCCCCc
Q 041113 789 GGFENAGLIARWAQRHGKMAVVSAAFE 815 (983)
Q Consensus 789 GGl~~~~~~~~~A~~~gi~~~~~~~~e 815 (983)
++ .++++.|..+|++++.+++.-
T Consensus 94 --~~--~ev~~~a~~~~ip~~PG~~Tp 116 (211)
T COG0800 94 --LN--PEVAKAANRYGIPYIPGVATP 116 (211)
T ss_pred --CC--HHHHHHHHhCCCcccCCCCCH
Confidence 22 468999999999977666543
No 464
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.79 E-value=49 Score=40.14 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=60.2
Q ss_pred ccchhhHHHHHHHHhcC------CceEEEEccCCChhHHHHHHHHHH-hcCCcEEeccccCccchhhhhhhhhhcccccc
Q 041113 70 SYTYCQMAEVLELVQGV------NKGLLLVGAVHNEDEIWAVLHLAR-HIRWPVVADILSGLRLRKLLASFLETEQNILF 142 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~A------krPvIl~G~g~~~~~~~~l~~lae-~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~ 142 (983)
...+++++.+++.|++. ++..++.|+.........+.+|+. .+|.+.+.+.. ... .+..-.....
T Consensus 70 iSWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~-~~c----~~~~~~~~~~--- 141 (565)
T cd02754 70 VSWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNS-RLC----MASAVAGYKR--- 141 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCC-ccc----chHHHHHHHh---
Confidence 35678899999888754 345554443322222346667776 47776654321 110 0100000000
Q ss_pred ccchhhhccCccccccCCCCEEEEeCCccccHHHH--HHHHhc--C--CceEEEEcCCCCCC
Q 041113 143 LDHLDHALLSESVKDWIQFDVIIQIGSRITSKRIS--QMIEEC--F--PCTYILVDNHPCRH 198 (983)
Q Consensus 143 ~g~~g~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~--~~~~~~--~--~~~~i~id~d~~~~ 198 (983)
.+|..........+.+||+||++|+.+...... .+.... . ..++|.||+.....
T Consensus 142 --~~G~~~~~~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~t 201 (565)
T cd02754 142 --SFGADGPPGSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRT 201 (565)
T ss_pred --hccCCCCCCCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcc
Confidence 112111111223567999999999997553322 122211 2 44788898876544
No 465
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=68.61 E-value=69 Score=38.00 Aligned_cols=131 Identities=15% Similarity=0.261 Sum_probs=85.8
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHh
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~ 722 (983)
++.+.+.++ ..++. .+.++.+++.|...+-+-.... +...-++.|+.+|+.+ |++.|++ ..-.|.++|....+
T Consensus 229 rL~Vgaavg--~~~~~-~~~~~~l~~ag~d~i~id~a~G-~s~~~~~~i~~ik~~~-~~~~v~a--G~V~t~~~a~~~~~ 301 (495)
T PTZ00314 229 QLLVGAAIS--TRPED-IERAAALIEAGVDVLVVDSSQG-NSIYQIDMIKKLKSNY-PHVDIIA--GNVVTADQAKNLID 301 (495)
T ss_pred CEEEEEEEC--CCHHH-HHHHHHHHHCCCCEEEEecCCC-CchHHHHHHHHHHhhC-CCceEEE--CCcCCHHHHHHHHH
Confidence 345544442 23444 7889999999999999887542 2334477899999998 6777777 44557788776554
Q ss_pred hcccCCCceee---cCC-------------CChH---HHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 723 LIKDCDLQYIE---EPV-------------QNEE---DIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 723 ~l~~~~i~~iE---eP~-------------~~~~---~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
.|..+|- -|- |+.. +.+++.++.++||..|--+.+..| +.+.+..|++.+.+
T Consensus 302 ----aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~d-----i~kAla~GA~~Vm~ 372 (495)
T PTZ00314 302 ----AGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGD-----ICKALALGADCVML 372 (495)
T ss_pred ----cCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHH-----HHHHHHcCCCEEEE
Confidence 4555552 111 2222 345556677899999999888764 55556678888876
Q ss_pred cCCCcC
Q 041113 784 KPSVIG 789 (983)
Q Consensus 784 k~~~~G 789 (983)
--...|
T Consensus 373 G~~~a~ 378 (495)
T PTZ00314 373 GSLLAG 378 (495)
T ss_pred Cchhcc
Confidence 544433
No 466
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=68.52 E-value=19 Score=43.26 Aligned_cols=110 Identities=10% Similarity=0.001 Sum_probs=68.3
Q ss_pred hHHHHHhhhhccCceEEEEE--ccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccC
Q 041113 328 LLSTAIGFAVGCNKHVLCVV--GDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTT 405 (983)
Q Consensus 328 ~lpaaiGaalA~~~~vv~i~--GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~ 405 (983)
+.-+|-|.+-+++++.+|++ |=| ..-.++.|.+|.. .++|+++|.-+-.....-+ ..+.. ...
T Consensus 50 A~~~Adgyar~tg~~gv~~~t~GpG-~~n~~~gia~A~~--~~~Pvl~i~g~~~~~~~~~----------~~~~~--~~~ 114 (535)
T TIGR03394 50 VGFAADAAARYRGTLGVAAVTYGAG-AFNMVNAIAGAYA--EKSPVVVISGAPGTTEGNA----------GLLLH--HQG 114 (535)
T ss_pred HHHHHhHHHHhhCCceEEEEecchH-HHhhhhHHHHHhh--cCCCEEEEECCCCcccccC----------CceeE--eec
Confidence 34456676666667766655 444 4446799999987 8999988875433211100 00000 001
Q ss_pred CCC-CHHHHHHHcCCceeeeCCHHHHHHHHHhhh----ccCCCEEEEEEcCc
Q 041113 406 HNI-SIQNLCLAHGLNHVQVKTKVELEEALSMSQ----HLGTDRVIEVESCI 452 (983)
Q Consensus 406 ~~~-df~~la~a~G~~~~~v~~~~eL~~aL~~a~----~~~~p~lIeV~~~~ 452 (983)
.++ |...+.+.+-....+|++++++.+.+++++ ..+||+.|++..|-
T Consensus 115 ~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv 166 (535)
T TIGR03394 115 RTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDM 166 (535)
T ss_pred cchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence 123 355666766667778888888777666654 45799999999774
No 467
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=68.45 E-value=1.7e+02 Score=32.04 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC----CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCC
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR----ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~----~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i 729 (983)
-+.+.+.+.++.+++.|.+.+=+--..+ .+.++=.+.++.+.+.++.++.+++=.. . +.+++++.++..++.|.
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGA 100 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCC
Confidence 4678899999999999999876532111 2345556677888888888888887775 3 68999999999988876
Q ss_pred ce--eecCCC---ChHH----HHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCCHHHHHHHHHH
Q 041113 730 QY--IEEPVQ---NEED----IIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARW 800 (983)
Q Consensus 730 ~~--iEeP~~---~~~~----~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GGl~~~~~~~~~ 800 (983)
.. +=-|.- +.++ ++++.+.+++||..=.. .+. +-+.+.+.++.+..-.++-+|-+ .|.+....++.+.
T Consensus 101 dav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~-~g~-~l~~~~~~~La~~~~nvvgiKds-~~d~~~~~~~~~~ 177 (296)
T TIGR03249 101 DGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQR-DNA-VLNADTLERLADRCPNLVGFKDG-IGDMEQMIEITQR 177 (296)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeC-CCC-CCCHHHHHHHHhhCCCEEEEEeC-CCCHHHHHHHHHH
Confidence 54 444432 3344 35677788899876441 111 11344566665422345567876 4677777776543
Q ss_pred HHHcCCcEEeC
Q 041113 801 AQRHGKMAVVS 811 (983)
Q Consensus 801 A~~~gi~~~~~ 811 (983)
.. .++.+..+
T Consensus 178 ~~-~~~~v~~G 187 (296)
T TIGR03249 178 LG-DRLGYLGG 187 (296)
T ss_pred cC-CCeEEEeC
Confidence 32 24554444
No 468
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=68.14 E-value=25 Score=37.77 Aligned_cols=111 Identities=14% Similarity=0.236 Sum_probs=68.4
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCC-CcEEEEEcCCC-----------C---CHHHHHHHHhhcccC
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDANRN-----------W---TYQEALEFGFLIKDC 727 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~-~~~l~vDaN~~-----------~---~~~~a~~~~~~l~~~ 727 (983)
++++.+.|+..+ -+|. ..-++.+.++.+.+.+|. .+.+.+|...+ | +.....++++.++++
T Consensus 89 ~~~l~~~G~~~v--vigs--~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~ 164 (258)
T PRK01033 89 AKKIFSLGVEKV--SINT--AALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL 164 (258)
T ss_pred HHHHHHCCCCEE--EECh--HHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc
Confidence 455556688765 4554 344667888999888873 57788896543 2 112244555666665
Q ss_pred CCcee-------ecCCC--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhc-CCCceEEE
Q 041113 728 DLQYI-------EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYA-HPGIVAIV 782 (983)
Q Consensus 728 ~i~~i-------EeP~~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~-~~~~~~i~ 782 (983)
++.++ ++... |++.++++++.+++||.+.=-+.+..| +..+. ..|++.+.
T Consensus 165 g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD-----~~~l~~~~GvdgVi 224 (258)
T PRK01033 165 GAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDD-----IVEAILNLGADAAA 224 (258)
T ss_pred CCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHH-----HHHHHHHCCCCEEE
Confidence 54322 12222 577788888888899877777777653 44444 45666544
No 469
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=68.10 E-value=63 Score=35.34 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=76.7
Q ss_pred eeEEEEeec-CCCCHHHHHHHHHHhhhcCCCEEEEe-------ccC----C-CChHHHHHHHHHHHHHcC-CCcEE--EE
Q 041113 643 SIKICALID-SNKSPVEVASIATTLVEEGFTAIKLK-------VAR----R-ADPIKDAEVIQEVRKKVG-HRIEL--RV 706 (983)
Q Consensus 643 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiK-------ig~----~-~~~~~d~~~v~~vr~~~g-~~~~l--~v 706 (983)
.+|+.+-.. +.+.+.++.+.++++.+.|...+-|. .|. . .+.++=+++|++++++-. +++.| |.
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 456654432 22344457788899999999888773 121 0 133444678888887653 34443 56
Q ss_pred EcCCCCCHHHHHHHHhhcccC--CCceeecCCCChHHHHHHHhhcCCcE
Q 041113 707 DANRNWTYQEALEFGFLIKDC--DLQYIEEPVQNEEDIIKYCEESGLPV 753 (983)
Q Consensus 707 DaN~~~~~~~a~~~~~~l~~~--~i~~iEeP~~~~~~~~~l~~~~~ipI 753 (983)
|+......++|++.++...+. +..|+|-|.. .++++++.+..+.|+
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~~-~~ei~~~~~~~~~P~ 204 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAMLD-VEEMKRVRDEIDAPL 204 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCCC-HHHHHHHHHhcCCCe
Confidence 998777899999999988765 5779987655 999999999888787
No 470
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=68.09 E-value=22 Score=38.30 Aligned_cols=114 Identities=16% Similarity=0.113 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHhhcccCCCceeecCCC-----ChHHHHHHHh-hcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ-----NEEDIIKYCE-ESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 710 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~-----~~~~~~~l~~-~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
..|+.++.+++++.|.+.|+..||=-+| +++.++++.+ ..+..+..--.. . .+.+....+.+++.+.+
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~-~-----~~~v~~a~~~g~~~i~i 88 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRA-V-----KEDIEAALRCGVTAVHI 88 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccC-C-----HHHHHHHHhCCcCEEEE
Confidence 4579999999999999999999999655 2344566655 233444332211 1 12355566677776664
Q ss_pred cCCC--------c-----CCHHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhh
Q 041113 784 KPSV--------I-----GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSY 829 (983)
Q Consensus 784 k~~~--------~-----GGl~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~ 829 (983)
=.+. . -.+....++++.|+++|+.+.++.+..+.........++..
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~ 147 (259)
T cd07939 89 SIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEV 147 (259)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHH
Confidence 2211 1 12567778999999999998877766654444444444443
No 471
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.07 E-value=35 Score=36.03 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=68.2
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCC-CcEEEEEcCCC--------CCHHHHHHHHhhcccCCCce-
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDANRN--------WTYQEALEFGFLIKDCDLQY- 731 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~-~~~l~vDaN~~--------~~~~~a~~~~~~l~~~~i~~- 731 (983)
.++++...|... +=+|. ..-.| +.++.+-+.+|. .+-+.+|+... .++.+.++.+... .-.+.+
T Consensus 92 dv~~~l~~Ga~~--viigt--~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 92 NAQEWLKRGASR--VIVGT--ETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred HHHHHHHcCCCe--EEEcc--eeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 466666778554 34554 23456 888888889986 78899999665 3466655554433 211221
Q ss_pred -ee-----cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 732 -IE-----EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 732 -iE-----eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
+. +.. +.+-++++.+.+++||..+=-+.+..| +..+.+.|++.+.+
T Consensus 166 di~~~G~~~g~-~~~~~~~i~~~~~ipvi~~GGi~s~ed-----i~~l~~~G~~~viv 217 (233)
T cd04723 166 DIDRVGSGQGP-DLELLERLAARADIPVIAAGGVRSVED-----LELLKKLGASGALV 217 (233)
T ss_pred EcCccccCCCc-CHHHHHHHHHhcCCCEEEeCCCCCHHH-----HHHHHHcCCCEEEE
Confidence 11 111 356677888888888887777777643 55566667765554
No 472
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=67.82 E-value=1.1e+02 Score=34.14 Aligned_cols=138 Identities=10% Similarity=0.125 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHH-cCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCceee
Q 041113 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKK-VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733 (983)
Q Consensus 655 ~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~-~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE 733 (983)
++++...+.++....|. .+-+-+|. ..++.+++.++-++ +|.| -|.+|+-.+.+. .+.++
T Consensus 70 ~~e~~~~~~r~~~~~~l-~v~~~vg~---~~~~~~~~~~Lv~ag~~~d-~i~iD~a~gh~~-~~~e~------------- 130 (326)
T PRK05458 70 DPEARIPFIKDMHEQGL-IASISVGV---KDDEYDFVDQLAAEGLTPE-YITIDIAHGHSD-SVINM------------- 130 (326)
T ss_pred CHHHHHHHHHhcccccc-EEEEEecC---CHHHHHHHHHHHhcCCCCC-EEEEECCCCchH-HHHHH-------------
Confidence 56666666655544555 44444443 24567777777765 3446 577886654322 12222
Q ss_pred cCCCChHHHHHHHhhcC-CcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCC---HH-----------HHHHHH
Q 041113 734 EPVQNEEDIIKYCEESG-LPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG---FE-----------NAGLIA 798 (983)
Q Consensus 734 eP~~~~~~~~~l~~~~~-ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GG---l~-----------~~~~~~ 798 (983)
++++++..+ +||..+|-. +.. ....+.+.|+|++. ++..|| ++ ..-.+.
T Consensus 131 --------I~~ir~~~p~~~vi~g~V~-t~e-----~a~~l~~aGad~i~--vg~~~G~~~~t~~~~g~~~~~w~l~ai~ 194 (326)
T PRK05458 131 --------IQHIKKHLPETFVIAGNVG-TPE-----AVRELENAGADATK--VGIGPGKVCITKIKTGFGTGGWQLAALR 194 (326)
T ss_pred --------HHHHHhhCCCCeEEEEecC-CHH-----HHHHHHHcCcCEEE--ECCCCCcccccccccCCCCCccHHHHHH
Confidence 667777775 888888754 332 46667778888843 332222 11 222355
Q ss_pred HHHHHcCCcEEeCCCCchHHHHHHHHHHH
Q 041113 799 RWAQRHGKMAVVSAAFESGLGLSAYIIFS 827 (983)
Q Consensus 799 ~~A~~~gi~~~~~~~~es~ig~~a~~~la 827 (983)
+.+++..++++..+...++--..-++.+.
T Consensus 195 ~~~~~~~ipVIAdGGI~~~~Di~KaLa~G 223 (326)
T PRK05458 195 WCAKAARKPIIADGGIRTHGDIAKSIRFG 223 (326)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHhC
Confidence 56666788988777777665555555443
No 473
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=67.71 E-value=58 Score=33.79 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccC-CCceeecCCCChHHH---HHHHhhcCCcEEeCCCccCcCC
Q 041113 689 EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC-DLQYIEEPVQNEEDI---IKYCEESGLPVALDETIDKFQK 764 (983)
Q Consensus 689 ~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~-~i~~iEeP~~~~~~~---~~l~~~~~ipIa~dEs~~~~~~ 764 (983)
+.++.+++.+...+.+-++ +.+.++.++-++.|.+. +..++|=|+- .+++ ++|++. ++++...- +++..
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~~~iKIP~T-~~gl~ai~~L~~~-gi~v~~T~-V~s~~- 113 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGNVVVKIPVT-EDGLKAIKKLSEE-GIKTNVTA-IFSAA- 113 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCCEEEEEcCc-HhHHHHHHHHHHc-CCceeeEE-ecCHH-
Confidence 5677888877556666676 46788887777777554 6789999998 4555 455444 78877665 44432
Q ss_pred ChHHHHHhhcCCCceEEEEcCCC-----cCCHHHHHHHHHHHHHcCCc
Q 041113 765 DPLNMLEKYAHPGIVAIVIKPSV-----IGGFENAGLIARWAQRHGKM 807 (983)
Q Consensus 765 ~~~~~~~~~~~~~~~~i~~k~~~-----~GGl~~~~~~~~~A~~~gi~ 807 (983)
+.....+.|++++.+-+++ .-|+.-..++.++++.+|++
T Consensus 114 ----Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 114 ----QALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFD 157 (211)
T ss_pred ----HHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 3555566788888887766 34788889999999999976
No 474
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.59 E-value=99 Score=31.41 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+++.|.+.+-+..-. ....+.++.+++.. +. +.+-++.-++.+++...+ +.+-.++
T Consensus 20 ~~~~~~~~~~~~~~~~~Gv~~vqlr~k~----~~~~e~~~~~~~~~-~~--~~~g~gtvl~~d~~~~A~----~~gAdgv 88 (187)
T PRK07455 20 APDLELGLQMAEAVAAGGMRLIEITWNS----DQPAELISQLREKL-PE--CIIGTGTILTLEDLEEAI----AAGAQFC 88 (187)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC----CCHHHHHHHHHHhC-CC--cEEeEEEEEcHHHHHHHH----HcCCCEE
Confidence 3578899999999999999999998743 23456777777665 32 233344445665544332 2466677
Q ss_pred ecCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cCCHHHHHHHHHHHHHc-CCcEEe
Q 041113 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRH-GKMAVV 810 (983)
Q Consensus 733 EeP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~GGl~~~~~~~~~A~~~-gi~~~~ 810 (983)
==|-.+.+ ....++..+++...| +.+.. .+....+.|+|++-+=++. .+|+....++.. .. +++++.
T Consensus 89 ~~p~~~~~-~~~~~~~~~~~~i~G--~~t~~-----e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~---~~~~ipvva 157 (187)
T PRK07455 89 FTPHVDPE-LIEAAVAQDIPIIPG--ALTPT-----EIVTAWQAGASCVKVFPVQAVGGADYIKSLQG---PLGHIPLIP 157 (187)
T ss_pred ECCCCCHH-HHHHHHHcCCCEEcC--cCCHH-----HHHHHHHCCCCEEEECcCCcccCHHHHHHHHh---hCCCCcEEE
Confidence 66665433 444566667787777 66654 3555566789998876664 567776555444 34 477664
Q ss_pred CC
Q 041113 811 SA 812 (983)
Q Consensus 811 ~~ 812 (983)
-+
T Consensus 158 iG 159 (187)
T PRK07455 158 TG 159 (187)
T ss_pred eC
Confidence 43
No 475
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=67.59 E-value=64 Score=36.08 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=68.9
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-------ChHHHHHHHHHHHHH---cCCCcE--E-------
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-------DPIKDAEVIQEVRKK---VGHRIE--L------- 704 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-------~~~~d~~~v~~vr~~---~g~~~~--l------- 704 (983)
||+.-.++-..+.+. +.+.++.||+.+-+.-.. . +.++.++..+++.+. .|-.++ |
T Consensus 76 VPValHLDHg~~~e~----i~~ai~~GftSVMiDgS~-l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e 150 (347)
T PRK09196 76 IPVVMHQDHGNSPAT----CQRAIQLGFTSVMMDGSL-KADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLE 150 (347)
T ss_pred CcEEEECCCCCCHHH----HHHHHHcCCCEEEecCCC-CcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcc
Confidence 566555554555553 666778899999998654 3 467788777777654 111111 1
Q ss_pred ----------EEEc----CCCC-CHHHHHHHHhhccc----------CCCceee-cCC---CChHHHHHHHhhc-CCcEE
Q 041113 705 ----------RVDA----NRNW-TYQEALEFGFLIKD----------CDLQYIE-EPV---QNEEDIIKYCEES-GLPVA 754 (983)
Q Consensus 705 ----------~vDa----N~~~-~~~~a~~~~~~l~~----------~~i~~iE-eP~---~~~~~~~~l~~~~-~ipIa 754 (983)
-.+. ...| ++++|.+|.++..- ++++--+ .|- -+++-++++++.+ ++|+.
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLV 230 (347)
T PRK09196 151 TGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLV 230 (347)
T ss_pred ccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEE
Confidence 0111 1225 79999999986532 2343322 463 2589999999999 79998
Q ss_pred eCCCc
Q 041113 755 LDETI 759 (983)
Q Consensus 755 ~dEs~ 759 (983)
+.=.-
T Consensus 231 LHGgS 235 (347)
T PRK09196 231 MHGSS 235 (347)
T ss_pred EeCCC
Confidence 86543
No 476
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=67.43 E-value=16 Score=41.19 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC--CCcEEEEEcCCCCCHHHHHHHH---hhccc-C
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG--HRIELRVDANRNWTYQEALEFG---FLIKD-C 727 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g--~~~~l~vDaN~~~~~~~a~~~~---~~l~~-~ 727 (983)
.+.+...+.+++..+.||+++=+.+.. .....|-+.+|..+. +.+..+.=.+..-++....... ..... .
T Consensus 120 ~d~~~~~~~i~rAe~aG~~Al~vtvD~----~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 195 (356)
T PF01070_consen 120 RDRELTRDLIRRAEAAGAKALVVTVDA----PQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGD 195 (356)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEETSH----SSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSST
T ss_pred cCHHHHHHHHHHhhcCCCCEEEEECcC----cccCCcccccccccCCCcccccccccccccCcccccccccccccccCCC
Confidence 467777778888778899999999843 233444466666552 1211111000000111000000 00000 0
Q ss_pred CC----ceee---cCCCChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcCC------HHHH
Q 041113 728 DL----QYIE---EPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG------FENA 794 (983)
Q Consensus 728 ~i----~~iE---eP~~~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~GG------l~~~ 794 (983)
+. .|+. +|-.+|++++++++..++||..=|- .+.. ....+.+.|++.|. ++-.|| +...
T Consensus 196 ~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-~~~~-----da~~~~~~G~~~i~--vs~hGGr~~d~~~~~~ 267 (356)
T PF01070_consen 196 NGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-LSPE-----DAKRAVDAGVDGID--VSNHGGRQLDWGPPTI 267 (356)
T ss_dssp STCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--SHH-----HHHHHHHTT-SEEE--EESGTGTSSTTS-BHH
T ss_pred cchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-ccHH-----HHHHHHhcCCCEEE--ecCCCcccCccccccc
Confidence 00 1111 3333589999999999999999998 3322 46667778888744 444444 6777
Q ss_pred HHHHHHHHHcC--CcEEeCCCCchHHHHHHHHHHHhh
Q 041113 795 GLIARWAQRHG--KMAVVSAAFESGLGLSAYIIFSSY 829 (983)
Q Consensus 795 ~~~~~~A~~~g--i~~~~~~~~es~ig~~a~~~laa~ 829 (983)
.-+.++.++.+ ++++..+...+|.-..-++.|.|-
T Consensus 268 ~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~ 304 (356)
T PF01070_consen 268 DALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGAD 304 (356)
T ss_dssp HHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-S
T ss_pred cccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCC
Confidence 77777777665 899999988888777777766653
No 477
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=67.26 E-value=1.9e+02 Score=34.24 Aligned_cols=170 Identities=9% Similarity=0.056 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCCC------hHHHHHHHHHHHHHcCCCcEEEEEcCC-------CCCHHHHHHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRAD------PIKDAEVIQEVRKKVGHRIELRVDANR-------NWTYQEALEF 720 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~~------~~~d~~~v~~vr~~~g~~~~l~vDaN~-------~~~~~~a~~~ 720 (983)
.+.++++.-++.+-+.||..+-+--|...+ -+.+.++++++|+.+ ++..|..=..+ .+.-+-...+
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~-~nt~lqmL~Rg~N~vGy~~y~ddvv~~f 102 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLM-PNSRLQMLLRGQNLLGYRHYEDEVVDRF 102 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhC-CCCeEEEEEcccccCCccCcchhHHHHH
Confidence 367888888888888999998885332111 135789999999998 66666543332 1222223345
Q ss_pred HhhcccCCC--ceeecCCCChHHHH----HHHhhcCC---cEEeCCC-ccCcCCChHHHHHhhcCCCceEEEEcCC-CcC
Q 041113 721 GFLIKDCDL--QYIEEPVQNEEDII----KYCEESGL---PVALDET-IDKFQKDPLNMLEKYAHPGIVAIVIKPS-VIG 789 (983)
Q Consensus 721 ~~~l~~~~i--~~iEeP~~~~~~~~----~l~~~~~i---pIa~dEs-~~~~~~~~~~~~~~~~~~~~~~i~~k~~-~~G 789 (983)
.+...+.++ ..|=+|+.|.+.+. .+++.-.. -|+---| .++.. ...+..+.+.+.|++.|.++-+ -+.
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e-~~~~~a~~l~~~Gad~I~IkDtaGll 181 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVE-GFVEQAKRLLDMGADSICIKDMAALL 181 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHH-HHHHHHHHHHHcCCCEEEeCCCccCC
Confidence 555555554 45778888666653 23322211 2222111 22222 1334456677789998887544 445
Q ss_pred CHHHHHHHHHHHHHc---CCcEEeCCCCchHHHHHHHHH
Q 041113 790 GFENAGLIARWAQRH---GKMAVVSAAFESGLGLSAYII 825 (983)
Q Consensus 790 Gl~~~~~~~~~A~~~---gi~~~~~~~~es~ig~~a~~~ 825 (983)
-...+.++....++. ++++.+|+--..|++.+-++.
T Consensus 182 ~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~la 220 (499)
T PRK12330 182 KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220 (499)
T ss_pred CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHH
Confidence 556666666666554 588777766666666555443
No 478
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=67.13 E-value=14 Score=41.47 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=26.7
Q ss_pred CceEEEeCCCCCChhh--------------H----HHHHHHhhCC-CEEEEEcCCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE--------------W----IPIMKAVSGS-ARCISIDLPGHGGSKMQ 981 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~--------------w----~~~~~~l~~~-~~vi~~Dl~G~G~S~~~ 981 (983)
-|.||++||-+..... | ..+...|+++ |-|+++|.+|+|+....
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~ 177 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDM 177 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SS
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccc
Confidence 5899999999877643 1 1235567665 99999999999986543
No 479
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=67.03 E-value=11 Score=41.30 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=49.8
Q ss_pred hHHHHHHHHhcCCceEEEEccCCC-hhHHHHHHHHHHh---cCCcEEeccccCccchhhhhhhhhhccccccc---cchh
Q 041113 75 QMAEVLELVQGVNKGLLLVGAVHN-EDEIWAVLHLARH---IRWPVVADILSGLRLRKLLASFLETEQNILFL---DHLD 147 (983)
Q Consensus 75 ~i~~~~~~L~~AkrPvIl~G~g~~-~~~~~~l~~lae~---l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~---g~~g 147 (983)
..|+++.+|.+|+..+|+-|+|.. .++...+++++++ -|++|=-.. ||.-|-.|. |=+.+.. =-|+
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaI------HPVAGRmPG-HMNVLLAEA~VpYd 369 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAI------HPVAGRMPG-HMNVLLAEAKVPYD 369 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEee------cccccCCCc-chhhhhhhccCCHH
Confidence 457888999999999999999865 4444455555555 455552211 111122331 1110000 0011
Q ss_pred hh-ccCccccccCCCCEEEEeCCccc
Q 041113 148 HA-LLSESVKDWIQFDVIIQIGSRIT 172 (983)
Q Consensus 148 ~~-~~~~~~~~~~~aDlvl~iG~~~~ 172 (983)
.. --+.-|....++|++|++|+.-.
T Consensus 370 ~v~emddIN~dF~~tDVvlVIGANDv 395 (463)
T COG1282 370 IVLEMDEINDDFADTDVVLVIGANDV 395 (463)
T ss_pred HHhhHHhhcchhccccEEEEEccCCC
Confidence 11 11233455778999999998643
No 480
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=66.79 E-value=67 Score=35.47 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=69.6
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHc---CCCcE-----E------EEEc
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV---GHRIE-----L------RVDA 708 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~---g~~~~-----l------~vDa 708 (983)
+||+.-.++-..+.+ .+.+.++.||+.+-+.-.. .+.+++++..+++.+.. |-.+. + ..+.
T Consensus 85 ~VPV~lHLDHg~~~e----~i~~ai~~GftSVMiD~S~-lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~ 159 (321)
T PRK07084 85 PIPIVLHLDHGDSFE----LCKDCIDSGFSSVMIDGSH-LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAE 159 (321)
T ss_pred CCcEEEECCCCCCHH----HHHHHHHcCCCEEEeeCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCc
Confidence 456655555455554 4667778899999998665 56788887777765532 11000 0 0111
Q ss_pred CCCC-CHHHHHHHHhhccc----------CCCceee-----cCCCChHHHHHHHhhc-CCcEEeCCCc
Q 041113 709 NRNW-TYQEALEFGFLIKD----------CDLQYIE-----EPVQNEEDIIKYCEES-GLPVALDETI 759 (983)
Q Consensus 709 N~~~-~~~~a~~~~~~l~~----------~~i~~iE-----eP~~~~~~~~~l~~~~-~ipIa~dEs~ 759 (983)
..-| ++++|.+|.++..- ++. |-. +|--+++-++++++.+ ++|+.+.=.-
T Consensus 160 ~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~-Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgS 226 (321)
T PRK07084 160 HHTYTQPEEVEDFVKKTGVDSLAISIGTSHGA-YKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSS 226 (321)
T ss_pred ccccCCHHHHHHHHHHhCCCEEeecccccccc-ccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCC
Confidence 2225 79999999985321 233 333 3433799999999998 6999886554
No 481
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=66.76 E-value=2.1e+02 Score=33.91 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=87.0
Q ss_pred eeEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHH
Q 041113 643 SIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721 (983)
Q Consensus 643 ~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~ 721 (983)
++.+.+-+......+++.++++++++.|...+-+-.+.. .+++.=...|+++++.+ ++.|.||.-. ++.+.+-+
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~--~~pISIDT~~---~~v~eaAL 225 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL--DSPVIADTPT---LDELYEAL 225 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC--CCcEEEeCCC---HHHHHHHH
Confidence 466766654333447889999999999999977765431 12222345667777654 5889999644 44444433
Q ss_pred hhcccCCCceeecCCC-ChHHHHHHHhhcCCcEEeCC-CccCcCCChHHHHHhhcCCCceEEEEcCCCcC---CHHHHHH
Q 041113 722 FLIKDCDLQYIEEPVQ-NEEDIIKYCEESGLPVALDE-TIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG---GFENAGL 796 (983)
Q Consensus 722 ~~l~~~~i~~iEeP~~-~~~~~~~l~~~~~ipIa~dE-s~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G---Gl~~~~~ 796 (983)
+. |..+|=.--. +.+.+..+.+..+.|+.+=- ......+.....+..+.+.|++-+.+||..-- ++.+.+.
T Consensus 226 ~a----GAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~ 301 (499)
T TIGR00284 226 KA----GASGVIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESII 301 (499)
T ss_pred Hc----CCCEEEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHH
Confidence 32 2222222111 24566666677776655411 10000000112334455567756788987611 2333333
Q ss_pred HHHHH-HHcCCcEEeCC
Q 041113 797 IARWA-QRHGKMAVVSA 812 (983)
Q Consensus 797 ~~~~A-~~~gi~~~~~~ 812 (983)
-...+ +.+|.++++|-
T Consensus 302 ~l~~~r~~~~~Pil~Gv 318 (499)
T TIGR00284 302 RFRRASRLLNVPLVFGA 318 (499)
T ss_pred HHHHHHHhcCCcEEEee
Confidence 33332 35788876664
No 482
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=66.11 E-value=37 Score=38.55 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=64.2
Q ss_pred ccchhhHHHHHHHHhcCC--ceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh
Q 041113 70 SYTYCQMAEVLELVQGVN--KGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
....++++.+++.|.+.+ +-.+++|.....+..-.+.+|++.+|...+..-. .. . ++-+ .+.. .+.+
T Consensus 69 ~sW~eAl~~ia~~l~~~~~~~i~~i~g~~~t~E~~~~lkkl~~~lgs~n~d~~~-~~--~--~~~~--~~~~---~~~~- 137 (366)
T cd02774 69 IGWKTAFKFLNKFILLKKFSKLNFIIGSKIDLETLFYYKKLLNKLGSLNTNSNN-FL--E--NNNY--FNLD---LENY- 137 (366)
T ss_pred cCHHHHHHHHHHHHhhcCcccEEEEECCCCCHHHHHHHHHHHHHhCCCceeccc-cc--c--cccc--cccc---ccCC-
Confidence 356678888888886543 4566666655444456889999999988776432 10 0 0011 1111 1111
Q ss_pred hhccCccccccCCCCEEEEeCCccccHHHHHH--HHh-c-C-CceEEEEcCCC
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSKRISQM--IEE-C-F-PCTYILVDNHP 195 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~--~~~-~-~-~~~~i~id~d~ 195 (983)
........+++||+||++|+.+......-+ +.. . . ..+++.|+...
T Consensus 138 --~~~~sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 138 --LFNNSLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred --ccCCCHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 112233457899999999998765443222 211 1 2 23677777654
No 483
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=66.03 E-value=10 Score=42.10 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=40.3
Q ss_pred eEEEEeecCCccCCCCceEEEeCCCCCChh-----------hHHHHHH---Hhh-CCCEEEEEcCCCCC-CCCCCC
Q 041113 923 SFIKVQEIGQRIDIQDNILLFLHGFLGTGE-----------EWIPIMK---AVS-GSARCISIDLPGHG-GSKMQN 982 (983)
Q Consensus 923 ~~~~~~~~g~~~~~~~~~lv~lHG~~~~~~-----------~w~~~~~---~l~-~~~~vi~~Dl~G~G-~S~~~~ 982 (983)
+++.|...|+-+......|+.+||+.++++ .|+.++. .+. .+|.||++|..|.+ .|+.|.
T Consensus 36 ~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~ 111 (368)
T COG2021 36 ARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPS 111 (368)
T ss_pred cEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCC
Confidence 345556666543222468999999999554 4666652 343 46999999999998 565553
No 484
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=65.67 E-value=40 Score=34.71 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee
Q 041113 653 NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732 (983)
Q Consensus 653 ~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 732 (983)
..++++..+.++.+ +.|++.+|+ |.......-.+.++.+|+.+ ++..+.+|..-. ++... .++.+.+.+..++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g~~~i~~l~~~~-~~~~i~~d~k~~-d~~~~--~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEGIEAVKEMKEAF-PDRKVLADLKTM-DAGEY--EAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhCHHHHHHHHHHC-CCCEEEEEEeec-cchHH--HHHHHHHcCCCEE
Confidence 35678888888877 778888776 42112233477899999987 466777775322 22211 1334455666777
Q ss_pred ----ecCCCChHHHHHHHhhcCCcEEeCC-CccCcCCChHHHHHhhcCCCceEEEEcCC
Q 041113 733 ----EEPVQNEEDIIKYCEESGLPVALDE-TIDKFQKDPLNMLEKYAHPGIVAIVIKPS 786 (983)
Q Consensus 733 ----EeP~~~~~~~~~l~~~~~ipIa~dE-s~~~~~~~~~~~~~~~~~~~~~~i~~k~~ 786 (983)
|-|..+...+.+..++.++++..+- +..+. ......+.+.++|++.+.+.
T Consensus 81 ~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~----~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 81 TVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDK----VKRAKELKELGADYIGVHTG 135 (206)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCCh----HHHHHHHHHcCCCEEEEcCC
Confidence 6553224555555667899988752 32221 22344455568898877664
No 485
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.52 E-value=18 Score=41.12 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHhhcccCCCceeec--CCCChHHH---HHHHhh-cCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE-
Q 041113 711 NWTYQEALEFGFLIKDCDLQYIEE--PVQNEEDI---IKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI- 783 (983)
Q Consensus 711 ~~~~~~a~~~~~~l~~~~i~~iEe--P~~~~~~~---~~l~~~-~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~- 783 (983)
.|+.++-+++++.|.+.|+.+||= |..+.+++ +.+.+. ....|+.-=. .. .+.+....+.|++.+.+
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r-~~-----~~di~~a~~~g~~~i~i~ 91 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLAR-AL-----KKDIDKAIDCGVDSIHTF 91 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcc-cC-----HHHHHHHHHcCcCEEEEE
Confidence 468999999999999999999997 54444444 444432 2334432111 11 22466666778776665
Q ss_pred -cCC-----------CcCCHHHHHHHHHHHHHcCCcEEeCC
Q 041113 784 -KPS-----------VIGGFENAGLIARWAQRHGKMAVVSA 812 (983)
Q Consensus 784 -k~~-----------~~GGl~~~~~~~~~A~~~gi~~~~~~ 812 (983)
..+ +-.-+..+.+.++.|+++|+.+.++-
T Consensus 92 ~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 132 (363)
T TIGR02090 92 IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA 132 (363)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 221 11135777889999999999876553
No 486
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=65.35 E-value=18 Score=40.90 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=62.2
Q ss_pred CceEEEEEccchhhhccchHHHHHhhccCCCEEEEEEeCCCCccccCCCCCCCCCccccccccccCCCCCHHHHHHHcCC
Q 041113 340 NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419 (983)
Q Consensus 340 ~~~vv~i~GDGsf~~~~~eL~Ta~~~~~~lpv~iiV~NN~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~ 419 (983)
+..++.+.|=|++.|-.. +..++ +-.=.++|++|+.||- .|.++|+.||+
T Consensus 55 ~~~~~ll~gsGt~amEAa-v~sl~----~pgdkVLv~~nG~FG~-------------------------R~~~ia~~~g~ 104 (383)
T COG0075 55 NGDVVLLSGSGTLAMEAA-VASLV----EPGDKVLVVVNGKFGE-------------------------RFAEIAERYGA 104 (383)
T ss_pred CCcEEEEcCCcHHHHHHH-HHhcc----CCCCeEEEEeCChHHH-------------------------HHHHHHHHhCC
Confidence 458999999999987533 22222 2233789999987643 38999999999
Q ss_pred ceeeeC-------CHHHHHHHHHhhhccCCCEEEEEEcCcccchHHHHHHHHHHHH
Q 041113 420 NHVQVK-------TKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQ 468 (983)
Q Consensus 420 ~~~~v~-------~~~eL~~aL~~a~~~~~p~lIeV~~~~~~~~~~~~~~~~~~~~ 468 (983)
+...++ ++++++++|++--..+--+++++.|.-.-.. -++++.+.+++
T Consensus 105 ~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~ 159 (383)
T COG0075 105 EVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN-PLKEIAKAAKE 159 (383)
T ss_pred ceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC-cHHHHHHHHHH
Confidence 877655 7899999888432223345666665543322 33444444443
No 487
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.12 E-value=1.8e+02 Score=31.50 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC------CChHHHHHHHHHHHHHcCCCcEEEEEcC----CCC---CHHHHHHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR------ADPIKDAEVIQEVRKKVGHRIELRVDAN----RNW---TYQEALEF 720 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~------~~~~~d~~~v~~vr~~~g~~~~l~vDaN----~~~---~~~~a~~~ 720 (983)
.+.++..+.+..+.+.||..+-+-.+.. ..-+.+.++++.+++.. ++.+|..=+. -+| ..+--...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~-~~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAM-PNTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhC-CCCceehhcccccccCccCCCcHHHHHH
Confidence 3677888888888899999987764320 01346788999999876 5555542121 112 11112334
Q ss_pred HhhcccCCCce--eecCCCChHHHH---HHHhhcCCcEEeCCC-----ccCcCCChHHHHHhhcCCCceEEEE-cCCCcC
Q 041113 721 GFLIKDCDLQY--IEEPVQNEEDII---KYCEESGLPVALDET-----IDKFQKDPLNMLEKYAHPGIVAIVI-KPSVIG 789 (983)
Q Consensus 721 ~~~l~~~~i~~--iEeP~~~~~~~~---~l~~~~~ipIa~dEs-----~~~~~~~~~~~~~~~~~~~~~~i~~-k~~~~G 789 (983)
.+...+.++.| +-.|+.+.+.+. +..+..+.-+....+ ..+.. ...+.++.+.+.|++.|.+ |..-.+
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~-~~~~~~~~~~~~Ga~~i~l~DT~G~~ 175 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLE-YYVKLAKELEDMGADSICIKDMAGLL 175 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHH-HHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 44455555554 566666555443 334455655443332 22211 1233444556678888776 555555
Q ss_pred CHHHHHHHHHHHHH-cCCcEEeCCCCchHHHHHHH
Q 041113 790 GFENAGLIARWAQR-HGKMAVVSAAFESGLGLSAY 823 (983)
Q Consensus 790 Gl~~~~~~~~~A~~-~gi~~~~~~~~es~ig~~a~ 823 (983)
-.....++....++ .++++.+|+--..|++.+-+
T Consensus 176 ~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~aN~ 210 (275)
T cd07937 176 TPYAAYELVKALKKEVGLPIHLHTHDTSGLAVATY 210 (275)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEecCCCChHHHHH
Confidence 56677777766655 36766665544444444333
No 488
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.83 E-value=46 Score=35.96 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHhhcccCCCceeecCCC-C-------------hHHHHHHHhhc--CCcEEeCCCccCcCCChHHHHHh
Q 041113 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ-N-------------EEDIIKYCEES--GLPVALDETIDKFQKDPLNMLEK 772 (983)
Q Consensus 709 N~~~~~~~a~~~~~~l~~~~i~~iEeP~~-~-------------~~~~~~l~~~~--~ipIa~dEs~~~~~~~~~~~~~~ 772 (983)
|..|+.++.+++++.|++.|+.+||==++ . .+.++++.+.. +.+|+.==.... . ....+..
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~~~l~~ 90 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-D--DIDLLEP 90 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-C--CHHHHHH
Confidence 44679999999999999999999998765 1 34556665432 455544211111 0 1224555
Q ss_pred hcCCCceEEEEcCCCcCCHHHHHHHHHHHHHcCCcEEeCCC
Q 041113 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAA 813 (983)
Q Consensus 773 ~~~~~~~~i~~k~~~~GGl~~~~~~~~~A~~~gi~~~~~~~ 813 (983)
..+.+++.+.+-... --+..++++++.|+++|+.+.+.-+
T Consensus 91 a~~~gv~~iri~~~~-~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 91 ASGSVVDMIRVAFHK-HEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HhcCCcCEEEEeccc-ccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 666778876654332 3589999999999999998776533
No 489
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=64.68 E-value=11 Score=42.85 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=27.0
Q ss_pred CceEEEeCCCCCChhh-HHHHHHHhh-CCCEEEEEcCCCCCCCCC
Q 041113 938 DNILLFLHGFLGTGEE-WIPIMKAVS-GSARCISIDLPGHGGSKM 980 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~-w~~~~~~l~-~~~~vi~~Dl~G~G~S~~ 980 (983)
.|+||++-|+-+-... |..+.+.|. .++.++++|+||-|.|.+
T Consensus 190 ~P~VIv~gGlDs~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~~ 234 (411)
T PF06500_consen 190 YPTVIVCGGLDSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESPK 234 (411)
T ss_dssp EEEEEEE--TTS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGTT
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCEEEEEccCCCccccc
Confidence 4667777777776655 555556665 569999999999999864
No 490
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=64.54 E-value=56 Score=34.47 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCC-CChHHHHHHHHHHHHHc-CCCcEEEEEcCCC-------CCHHHHHHHHhhc
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARR-ADPIKDAEVIQEVRKKV-GHRIELRVDANRN-------WTYQEALEFGFLI 724 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~-~~~~~d~~~v~~vr~~~-g~~~~l~vDaN~~-------~~~~~a~~~~~~l 724 (983)
.+.+....++++.++.|...+.+-+... .+.++-.+.++++++.. +.++.+++|.... .+.++..+.++..
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 3445566678888889999886655321 12222344555555432 2467788865331 2334333334445
Q ss_pred ccCCCceeecCCC-ChHHHHHHHhhcCCcEEeCC--CccCcCCChHHHHHhhcCCCceEEE
Q 041113 725 KDCDLQYIEEPVQ-NEEDIIKYCEESGLPVALDE--TIDKFQKDPLNMLEKYAHPGIVAIV 782 (983)
Q Consensus 725 ~~~~i~~iEeP~~-~~~~~~~l~~~~~ipIa~dE--s~~~~~~~~~~~~~~~~~~~~~~i~ 782 (983)
.+.+..|+--+.. +.+.++++.+..++||..=. ...+..+ .++.+..+.+.|++.+.
T Consensus 153 ~~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~-~l~~~~~~~~~Ga~gv~ 212 (235)
T cd00958 153 AELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKKDSEEE-FLKMVYDAMEAGAAGVA 212 (235)
T ss_pred HHHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCCCCHHH-HHHHHHHHHHcCCcEEE
Confidence 5566666666655 67888999888888875533 3334321 22345556666766554
No 491
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=64.43 E-value=5.2 Score=45.64 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.9
Q ss_pred CceEEEeCCCCCChhhHHHHHHHhhCC-CEEEEEcCCC
Q 041113 938 DNILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPG 974 (983)
Q Consensus 938 ~~~lv~lHG~~~~~~~w~~~~~~l~~~-~~vi~~Dl~G 974 (983)
-|.|||-||++++...+..+...|+.+ |=|+++|.|-
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrD 137 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRD 137 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---S
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCC
Confidence 488999999999999999999989765 9999999995
No 492
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=64.23 E-value=30 Score=39.45 Aligned_cols=111 Identities=10% Similarity=0.069 Sum_probs=63.0
Q ss_pred ccchhhHHHHHHHHhcCC--ceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchh
Q 041113 70 SYTYCQMAEVLELVQGVN--KGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLD 147 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~Ak--rPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g 147 (983)
...+++++.+++.|++.+ ...++.|..........+.+|++.+|.+-+.+..+. ...+... ..+ +.
T Consensus 68 isWdeAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~-------~~~~~~~----~~~-~~ 135 (375)
T cd02773 68 ATWEEALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDG-------PDLPADL----RSN-YL 135 (375)
T ss_pred cCHHHHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccc-------ccccccc----ccc-cc
Confidence 456789999999998775 566666654433344578899999998765443211 1111100 000 10
Q ss_pred hhccCccccccCCCCEEEEeCCccccH-HHHH-HHH-hcC--CceEEEEcCCC
Q 041113 148 HALLSESVKDWIQFDVIIQIGSRITSK-RISQ-MIE-ECF--PCTYILVDNHP 195 (983)
Q Consensus 148 ~~~~~~~~~~~~~aDlvl~iG~~~~~~-~~~~-~~~-~~~--~~~~i~id~d~ 195 (983)
.+ .....+.+||+||++|+.+... .... ... ... ..++|.||...
T Consensus 136 -~~--~~~~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~ 185 (375)
T cd02773 136 -FN--TTIAGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPV 185 (375)
T ss_pred -cC--CCHHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcc
Confidence 11 1223568999999999987433 2222 222 221 34688888654
No 493
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=63.72 E-value=44 Score=40.91 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=64.1
Q ss_pred ccchhhHHHHHHHHhcCCceEEEEccCCChhHHHHHHHHHHhcCCcEEeccccCccchhhhhhhhhhccccccccchhhh
Q 041113 70 SYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHA 149 (983)
Q Consensus 70 ~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~~~~l~~lae~l~~Pv~~t~~sg~~~~~~kg~~~~~hp~~~~~g~~g~~ 149 (983)
...+++++.+++.|++.++..++.|..........+.+|++.+|.+-+.... .. .... ..+.. .+. ..
T Consensus 286 isWdeAl~~ia~kL~~i~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~-~~------~~~~-~~~~~--~~~--~~ 353 (603)
T TIGR01973 286 VSWAEALAIAAEKLKASSRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRI-RN------YEFE-SADLR--ANY--LF 353 (603)
T ss_pred cCHHHHHHHHHHHHhccCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccc-cc------cccc-cchhh--ccc--cc
Confidence 4567889999999988867777666544433345788999999876443221 10 0000 00000 000 01
Q ss_pred ccCccccccCCCCEEEEeCCccccHHHH--HHHH-hc-CC-ceEEEEcCCCCCC
Q 041113 150 LLSESVKDWIQFDVIIQIGSRITSKRIS--QMIE-EC-FP-CTYILVDNHPCRH 198 (983)
Q Consensus 150 ~~~~~~~~~~~aDlvl~iG~~~~~~~~~--~~~~-~~-~~-~~~i~id~d~~~~ 198 (983)
+ .....+.++|+||++|+.+.+.... .+.. .. .. .++|.||+.....
T Consensus 354 g--~~~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~t 405 (603)
T TIGR01973 354 N--TTLADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNL 405 (603)
T ss_pred C--CCHHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 1 1223567899999999987554322 2222 11 12 4688888655433
No 494
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=63.44 E-value=68 Score=32.10 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=62.6
Q ss_pred HHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHhhcccCCCcee-------ecC
Q 041113 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI-------EEP 735 (983)
Q Consensus 663 ~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i-------EeP 735 (983)
++.+.+.|+..+-+..+....++...+.++++|+.+ +++.+.+..+.....+.+. +.++++.++ +..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccchhh-----HHHcCCCEEEEcCCcCCCC
Confidence 456667899999888764212345678899999998 6777777776555443331 223333222 221
Q ss_pred CC--Ch---HHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEE
Q 041113 736 VQ--NE---EDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782 (983)
Q Consensus 736 ~~--~~---~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~ 782 (983)
.. +. ...+.+++..++||..+--+.+.. .+..+.+.|+|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~-----~~~~~~~~Gad~v~ 197 (200)
T cd04722 151 GRDAVPIADLLLILAKRGSKVPVIAGGGINDPE-----DAAEALALGADGVI 197 (200)
T ss_pred CccCchhHHHHHHHHHhcCCCCEEEECCCCCHH-----HHHHHHHhCCCEEE
Confidence 11 11 223445556678877766665532 24444555676654
No 495
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=63.36 E-value=2.4e+02 Score=34.24 Aligned_cols=170 Identities=11% Similarity=0.098 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccC------CCChHHHHHHHHHHHHHcCCCcEEEEEcCC----CCC--HHHH-HHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVAR------RADPIKDAEVIQEVRKKVGHRIELRVDANR----NWT--YQEA-LEF 720 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~----~~~--~~~a-~~~ 720 (983)
.+.+++..-++.+-+.||..+-+--|. +.--+.+.++++++|+.+ ++..|..=..+ +|. ++++ ..+
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~-~~~~lqml~Rg~n~vg~~~ypddvv~~~ 102 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAM-PNTPQQMLLRGQNLLGYRHYADDVVERF 102 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhC-CCCeEEEEecCcceeccccCcHHHHHHH
Confidence 467788888888888999998884331 111246789999999987 77776433342 343 2333 344
Q ss_pred HhhcccCCCc--eeecCCCChHHHH---HHHhhcCCc----EEe-CCCccCcCCChHHHHHhhcCCCceEEEEcCCC-cC
Q 041113 721 GFLIKDCDLQ--YIEEPVQNEEDII---KYCEESGLP----VAL-DETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IG 789 (983)
Q Consensus 721 ~~~l~~~~i~--~iEeP~~~~~~~~---~l~~~~~ip----Ia~-dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~-~G 789 (983)
.+...+.++. .+=+++.+.+.+. +..+..+.- |+. +...++.. ...+.++.+.+.|++.|.++-+- ..
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~-~~~~~a~~l~~~Gad~i~i~Dt~G~l 181 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQ-TWVDLAKQLEDMGVDSLCIKDMAGLL 181 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHH-HHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 5555555543 4557777655443 333444543 332 12222221 12344555667789988876554 33
Q ss_pred CHHHHHHHHHHHH-HcCCcEEeCCCCchHHHHHHHHH
Q 041113 790 GFENAGLIARWAQ-RHGKMAVVSAAFESGLGLSAYII 825 (983)
Q Consensus 790 Gl~~~~~~~~~A~-~~gi~~~~~~~~es~ig~~a~~~ 825 (983)
-...+.++....+ ..++++-+|+--.+|++.+.++.
T Consensus 182 ~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~la 218 (593)
T PRK14040 182 KPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLK 218 (593)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHH
Confidence 3445555555544 34777777766566666555443
No 496
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=63.27 E-value=79 Score=36.72 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=81.9
Q ss_pred EEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCC-------------ChHHHHHHHHHHHHHcCCCcEEEEEcCCC
Q 041113 645 KICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRA-------------DPIKDAEVIQEVRKKVGHRIELRVDANRN 711 (983)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~-------------~~~~d~~~v~~vr~~~g~~~~l~vDaN~~ 711 (983)
++..++.+..+++++.+.++.+.+.|+..|-+-++.+. +++.-.+.++++++.+. +.+.|=-..
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~--~Pv~vKl~p- 177 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSR--LPVIVKLTP- 177 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccC--CcEEEEcCC-
Confidence 44455533336888888888888889999999877531 23334566777777652 344333222
Q ss_pred CCHHHHHHHHhhcccCCCcee--------------e----cC-CC----------------ChHHHHHHHhhc---CCcE
Q 041113 712 WTYQEALEFGFLIKDCDLQYI--------------E----EP-VQ----------------NEEDIIKYCEES---GLPV 753 (983)
Q Consensus 712 ~~~~~a~~~~~~l~~~~i~~i--------------E----eP-~~----------------~~~~~~~l~~~~---~ipI 753 (983)
+..+...+++.+++.++..| | .| ++ .++-.++++++. ++||
T Consensus 178 -~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipI 256 (420)
T PRK08318 178 -NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPI 256 (420)
T ss_pred -CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCE
Confidence 22234456666655543322 1 12 11 123345666665 6888
Q ss_pred EeCCCccCcCCChHHHHHhhcCCCceEEEEcCCCcC-CHHHHHHHHH
Q 041113 754 ALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG-GFENAGLIAR 799 (983)
Q Consensus 754 a~dEs~~~~~~~~~~~~~~~~~~~~~~i~~k~~~~G-Gl~~~~~~~~ 799 (983)
.+-=-+.+..| ..+++..|++.|++-..... |..-..++.+
T Consensus 257 ig~GGI~s~~d-----a~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 257 SGIGGIETWRD-----AAEFILLGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred EeecCcCCHHH-----HHHHHHhCCChheeeeeeccCCchhHHHHHH
Confidence 87666666543 33344478888777655444 5554444443
No 497
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.11 E-value=23 Score=40.21 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred EcCCC----CCHHHHHHHHhhcccCCCceeecCCC-----ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCC
Q 041113 707 DANRN----WTYQEALEFGFLIKDCDLQYIEEPVQ-----NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPG 777 (983)
Q Consensus 707 DaN~~----~~~~~a~~~~~~l~~~~i~~iEeP~~-----~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~ 777 (983)
|++|+ |+.++-+++++.|.+.|+..||=-+| +++.++++++...-.-...=.-....+ +....+.+
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~d-----i~~a~~~g 85 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDAD-----IEAAARCG 85 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHH-----HHHHHcCC
Q ss_pred ceEEEEcCCCcCC-------------HHHHHHHHHHHHHcCCcEEeCCCCchHHHHHHHHHHHhhc
Q 041113 778 IVAIVIKPSVIGG-------------FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830 (983)
Q Consensus 778 ~~~i~~k~~~~GG-------------l~~~~~~~~~A~~~gi~~~~~~~~es~ig~~a~~~laa~~ 830 (983)
++.+.+=....-- +..+.++++.|+++|+.+.++....+-......+.++..+
T Consensus 86 ~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 151 (365)
T TIGR02660 86 VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVA 151 (365)
T ss_pred cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHH
No 498
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=62.82 E-value=38 Score=35.63 Aligned_cols=113 Identities=17% Similarity=0.316 Sum_probs=68.1
Q ss_pred HHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEEcCC------CCCH---HHHHHHHhhcccCCCce
Q 041113 662 IATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVDANR------NWTY---QEALEFGFLIKDCDLQY 731 (983)
Q Consensus 662 ~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vDaN~------~~~~---~~a~~~~~~l~~~~i~~ 731 (983)
.++++.+.|...+= +|. ..-.|.+.+..+-+.+| ..+-+.+|... +|.. ....++++.+++.+..+
T Consensus 86 d~~~~~~~Ga~~vv--lgs--~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ 161 (230)
T TIGR00007 86 DVEKLLDLGVDRVI--IGT--AAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEG 161 (230)
T ss_pred HHHHHHHcCCCEEE--ECh--HHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCE
Confidence 35566667888653 453 34456778888888887 44777788652 2321 12344555555555432
Q ss_pred -eecCC------C--ChHHHHHHHhhcCCcEEeCCCccCcCCChHHHHHhhcCCCceEEEE
Q 041113 732 -IEEPV------Q--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783 (983)
Q Consensus 732 -iEeP~------~--~~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~~~~~~~~~i~~ 783 (983)
+=-.+ . +++-++++++..++||...=-+.+..| +..+.+.|++.+.+
T Consensus 162 ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~d-----i~~~~~~Gadgv~i 217 (230)
T TIGR00007 162 IIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDD-----LIALKKLGVYGVIV 217 (230)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHH-----HHHHHHCCCCEEEE
Confidence 21111 1 467778888888889887777777653 44555567776654
No 499
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=62.60 E-value=75 Score=34.61 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=78.9
Q ss_pred eEEEEeecCCCCHHHHHHHHHHhhhcCCCEEEEeccCCCChHHHHHHHHHHHHHcC-CCcEEEEE------------cCC
Q 041113 644 IKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVG-HRIELRVD------------ANR 710 (983)
Q Consensus 644 i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKig~~~~~~~d~~~v~~vr~~~g-~~~~l~vD------------aN~ 710 (983)
||+.-.++...+.+ .+++.++.||+.+-+.--. .+.++.++..+++++..- .++.+-.| ..+
T Consensus 75 vpv~lHlDH~~~~e----~i~~Al~~G~tsVm~d~s~-~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g 149 (281)
T PRK06806 75 VPVAVHFDHGMTFE----KIKEALEIGFTSVMFDGSH-LPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE 149 (281)
T ss_pred CCEEEECCCCCCHH----HHHHHHHcCCCEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc
Confidence 45544444444443 5666778899999998654 355666766666655320 11111111 111
Q ss_pred --CCCHHHHHHHHhhc-ccC-CC-------ceeecCCCChHHHHHHHhhcCCcEEeCC-CccCcCCChHHHHHhhcCCCc
Q 041113 711 --NWTYQEALEFGFLI-KDC-DL-------QYIEEPVQNEEDIIKYCEESGLPVALDE-TIDKFQKDPLNMLEKYAHPGI 778 (983)
Q Consensus 711 --~~~~~~a~~~~~~l-~~~-~i-------~~iEeP~~~~~~~~~l~~~~~ipIa~dE-s~~~~~~~~~~~~~~~~~~~~ 778 (983)
.-++++|.++.+.. -+| .+ .+=..|--+++.++++++.+++|+.+-= |=.+ .+.+..+++.|+
T Consensus 150 ~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-----~e~~~~~i~~G~ 224 (281)
T PRK06806 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-----PEDFKKCIQHGI 224 (281)
T ss_pred ceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-----HHHHHHHHHcCC
Confidence 23889999987542 121 11 1111222269999999999999987654 3222 135777888898
Q ss_pred eEEEEcCCCcC
Q 041113 779 VAIVIKPSVIG 789 (983)
Q Consensus 779 ~~i~~k~~~~G 789 (983)
+-+++....+.
T Consensus 225 ~kinv~T~i~~ 235 (281)
T PRK06806 225 RKINVATATFN 235 (281)
T ss_pred cEEEEhHHHHH
Confidence 88887655543
No 500
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=62.36 E-value=2.2e+02 Score=33.36 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHhhhcCCCEEEEeccCCC------ChHHHHHHHHHHHHHcCCCcEEE--EEc-C-CCCC--HHH-HHHH
Q 041113 654 KSPVEVASIATTLVEEGFTAIKLKVARRA------DPIKDAEVIQEVRKKVGHRIELR--VDA-N-RNWT--YQE-ALEF 720 (983)
Q Consensus 654 ~~~~~~~~~~~~~~~~G~~~~KiKig~~~------~~~~d~~~v~~vr~~~g~~~~l~--vDa-N-~~~~--~~~-a~~~ 720 (983)
.+.++..+.++.+.+.||..+-+--|... --+.+.++++++|+.+ +++.+. +-+ | -+|. +++ ..++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~-~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAV-KKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhC-CCCEEEEEeccccccccccCchhhHHHH
Confidence 35678888888888899999988433100 1123678999999887 667765 222 2 2342 122 2234
Q ss_pred HhhcccCCCce--eecCCCChHHH---HHHHhhcCCcE----Ee-CCCccCcCCChHHHHHhhcCCCceEEEEc-CCCcC
Q 041113 721 GFLIKDCDLQY--IEEPVQNEEDI---IKYCEESGLPV----AL-DETIDKFQKDPLNMLEKYAHPGIVAIVIK-PSVIG 789 (983)
Q Consensus 721 ~~~l~~~~i~~--iEeP~~~~~~~---~~l~~~~~ipI----a~-dEs~~~~~~~~~~~~~~~~~~~~~~i~~k-~~~~G 789 (983)
.+...+.++.+ +=.++.+.+.+ .+..++.+.-+ +. +...++.. ...+..+.+.+.|+|.|.++ ..-+.
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~-~~~~~a~~l~~~Gad~I~i~Dt~G~l 180 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTID-YFVKLAKEMQEMGADSICIKDMAGIL 180 (448)
T ss_pred HHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHH-HHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 44444445554 44455443333 33444455432 22 11222221 13344566677889888774 44455
Q ss_pred CHHHHHHHHHHHHH-cCCcEEeCCCCchHHHHHHHH
Q 041113 790 GFENAGLIARWAQR-HGKMAVVSAAFESGLGLSAYI 824 (983)
Q Consensus 790 Gl~~~~~~~~~A~~-~gi~~~~~~~~es~ig~~a~~ 824 (983)
-...+.+++...++ .++++.+|+--..|++.+-++
T Consensus 181 ~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~l 216 (448)
T PRK12331 181 TPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYL 216 (448)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHH
Confidence 56666666665554 478877766555665554444
Done!