RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041113
(983 letters)
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 332 bits (853), Expect = e-103
Identities = 120/470 (25%), Positives = 211/470 (44%), Gaps = 44/470 (9%)
Query: 1 MILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYI 60
AV A +P GPVH+N P REPL L+ + + +I
Sbjct: 151 YAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPI--------LEPSPFTATGKKHHHVHI 202
Query: 61 QVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADI 120
H S + +++ G KG+ +VG + ++ ++ LA+ + WP++AD
Sbjct: 203 YYTHEVLDDS----SIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADP 257
Query: 121 LSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMI 180
LSGLR + + +D D L + D + +V+I+ GS SK + +
Sbjct: 258 LSGLRS--------YGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWL 309
Query: 181 EECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLK-VQVPHRSSKWCSFLRALD 239
E+ + +VD DP +VT I +D + + + + + W + + +
Sbjct: 310 EQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYN 369
Query: 240 MMVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHT 299
+ + ++ L E + EL R L + LF+GNSM IRD+D Y
Sbjct: 370 KVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQI------ 423
Query: 300 VADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGL 359
+ I++ NRGA+GIDG++S+A+G +V + + ++GD+SF HD NGL
Sbjct: 424 -----------DKKIKMLANRGANGIDGVVSSALGASVV-FQPMFLLIGDLSFYHDMNGL 471
Query: 360 AILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419
+ K+ + + ++++NN GG IFS LP A+ EP+ + F T+ + + +
Sbjct: 472 LMAKKY--KMNLTIVIVNNDGGGIFSFLPQAN--EPKYFESLFGTSTELDFRFAAAFYDA 527
Query: 420 NHVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRKFARQS 469
++ + K+ ELEEA+ + + +IEV++ N H L
Sbjct: 528 DYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQALEGHHHHH 577
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 327 bits (841), Expect = e-101
Identities = 117/469 (24%), Positives = 207/469 (44%), Gaps = 45/469 (9%)
Query: 2 ILTTLDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQ 61
I T A A P GPVH+N P REPL P + S++ T+ +
Sbjct: 172 IRTLASRAAGEAQKRPMGPVHVNVPLREPLM--PDLSDEPFGRMRTGRHVSVKTGTQSVD 229
Query: 62 VQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADIL 121
+ +++V E++ KG+++ G +H++ + ++ L++ +++P++AD L
Sbjct: 230 RE-----------SLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADPL 278
Query: 122 SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIE 181
S LR +D D L + +K ++ DV+I+ G SK + ++
Sbjct: 279 SNLRN--------GVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKPVFLWLK 330
Query: 182 ECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPH-RSSKWCSFLRALDM 240
+ I++D DP+ + H I F + ++ RSS+W + ++
Sbjct: 331 DDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNG 390
Query: 241 MVASEISFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTV 300
+ I ++ E ++ L + NS+LFVGNSM IRD+D +
Sbjct: 391 RFREHLQ-TISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFE--------- 440
Query: 301 ADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLA 360
+ R+ NRGA+GIDG++S+A+G G V V+GD+SF HD NGL
Sbjct: 441 --------KQDRPFRIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHDLNGLL 492
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLN 420
K+ P+ ++++NN GG IFS LP A E + F T + ++ +G
Sbjct: 493 AAKKL--GIPLTVILVNNDGGGIFSFLPQAS--EKTHFEDLFGTPTGLDFKHAAALYGGT 548
Query: 421 HVQVKTKVELEEALSMSQHLGTDRVIEVESCIDANATFH-SMLRKFARQ 468
+ + E + A + +IE+++ + H ML + R+
Sbjct: 549 YSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 317 bits (813), Expect = 2e-97
Identities = 119/458 (25%), Positives = 187/458 (40%), Gaps = 58/458 (12%)
Query: 8 SAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDIWTSSIEPFTKYIQVQHSHA 67
+ H + G VHINCPF EPL S + L W +P+ + S
Sbjct: 151 TIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEK 210
Query: 68 CKSYTYCQMAEVLELVQGVNKGLLLVGAVHNEDEIWAVLHLARHIRWPVVADILSGLRLR 127
+ K ++V + +E V A+ + WP++ D+LS
Sbjct: 211 -----------QRDWFFWRQKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQ- 258
Query: 128 KLLASFLETEQNILFLDHLDHALL-SESVKDWIQFDVIIQIGSRITSKRISQMIEECFPC 186
L D L +++ + Q +++Q+GS +T KR+ Q C P
Sbjct: 259 --------------PLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPE 304
Query: 187 TYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEI 246
Y +VD+ R DP+H R+ + I + L++ + WC + L +
Sbjct: 305 EYWIVDDIEGRLDPAHHRGRRLIANIADW----LELHPAEKRQPWCVEIPRLA---EQAM 357
Query: 247 SFQICADYSLTEPHVAHELSRALTSNSALFVGNSMAIRDLDMYGRNWTTCTHTVADIMLN 306
I + E +AH + L LFVGNS+ +R +D +
Sbjct: 358 QAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQ--------------- 402
Query: 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRM 366
V NRGASGIDGLLSTA G K L +VGD+S L+D N LA+L+Q
Sbjct: 403 ---LPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQV- 458
Query: 367 KRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKT 426
P++++V+NN+GG IFSLLP ++++ N+ ++ L + + +
Sbjct: 459 -SAPLVLIVVNNNGGQIFSLLPTPQSE----RERFYLMPQNVHFEHAAAMFELKYHRPQN 513
Query: 427 KVELEEALSMSQHLGTDRVIEVESCIDANATFHSMLRK 464
ELE A + + T VIE+ A L
Sbjct: 514 WQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLA 551
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 195 bits (498), Expect = 5e-56
Identities = 71/378 (18%), Positives = 136/378 (35%), Gaps = 78/378 (20%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKE 552
+ + ++I + A R R+G + L E G+GE++PL +E
Sbjct: 2 HMRSAQVYRWQIPMDAGVVLRD----RRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQE 56
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
+A+ L ++ +W+ G PSV G+ A+
Sbjct: 57 TWEEAQSVLLAWVN-------------------NWL---AGDCELPQMPSVAFGVSCALA 94
Query: 613 NAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
++ + +C P ++ G
Sbjct: 95 ELTDTLPQAANY-----------------RAAPLCNG-----DPDDLI--LKLADMPGEK 130
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC---DL 729
K++V + ++D V+ + + + + LR+DANR WT + +F + +
Sbjct: 131 VAKVRVGLY-EAVRDGMVVNLLLEAIPD-LHLRLDANRAWTPLKGQQFAKYVNPDYRDRI 188
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIG 789
++EEP + +D + E+G+ +A DE++ + A G+ A+VIKP++ G
Sbjct: 189 AFLEEPCKTRDDSRAFARETGIAIAWDESLRE-PDFAF-----VAEEGVRAVVIKPTLTG 242
Query: 790 GFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPV 849
E + A G AV+S++ ES LGL+ +++L P
Sbjct: 243 SLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLT---------------PDT 287
Query: 850 AQGLGTYQWLKEDVTTDP 867
GL T ++
Sbjct: 288 IPGLDTLDLMQAQQVRRW 305
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 187 bits (477), Expect = 2e-52
Identities = 82/386 (21%), Positives = 150/386 (38%), Gaps = 51/386 (13%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKENLL 555
+ Y + P +S + + + L DG G GEV+ + + +
Sbjct: 6 ELSYRRSDLIFKRPAGTSR----GVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEE 60
Query: 556 DAEEQLRFLLHFMTGAKI---SYFLPLLKGSFSSWIWSTL----------GIPACEIFPS 602
+L L + + FL G+ S S L + FP+
Sbjct: 61 QIGRELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPA 120
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+R LEMA+L+ ++ F + ++ I + LI +
Sbjct: 121 LRFALEMALLDLLSGGRQEWF----------ASDFTRGEKRIPVNGLIWMG-EAAFMQEQ 169
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGH-RIELRVDANRNWTYQEALEFG 721
+ EG+ +KLK+ D K+ ++ +R+ ++E+RVDAN ++ A +
Sbjct: 170 IEAKLAEGYGCLKLKIGAI-DFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRL 228
Query: 722 FLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV 779
+ L IE+P+ ++ C S L +ALDE + + + + P
Sbjct: 229 KRLSQFHLHSIEQPIRQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQY- 287
Query: 780 AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCK 839
I++KPS++GGF AG A+ G +++A ES LGL+A +++ +
Sbjct: 288 -IILKPSLLGGFHYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQ-------- 338
Query: 840 VMNRELCPPVAQGLGTYQWLKEDVTT 865
P + QGLGT Q ++ +
Sbjct: 339 -------PTMPQGLGTGQLYTNNLPS 357
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase,
PSI, protein structure initiative; 1.42A {Synechococcus
elongatus} PDB: 3h7v_A
Length = 332
Score = 182 bits (465), Expect = 3e-51
Identities = 68/376 (18%), Positives = 121/376 (32%), Gaps = 74/376 (19%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLL 555
R ++ +Y L P T++ R G L L E G VGYGE+APL E L
Sbjct: 4 RWQWRIYEEPLQEPLTTAQ----GVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN 59
Query: 556 DAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
+ L +T ++ E P+ + G A
Sbjct: 60 ADIALCQQLPGHLTPEIMA--------------------TIPEALPAAQFGFATA----- 94
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
+ + R ICAL+ S + G T K
Sbjct: 95 --------------WQSVGR-LPYRVRPWPICALLGS---GQAALEQWQQSWQRGQTTFK 136
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYI 732
KV P ++ +++ + + +LR+DAN +W A + + ++Y+
Sbjct: 137 WKVGVM-SPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYV 195
Query: 733 EEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG 790
E+P+ + ++ + +ALDE++ + VIK ++ G
Sbjct: 196 EQPLPPDQWQALLSLAQTVTTAIALDESV----VSAAEVQRWVDRGWPGFFVIKTALFGD 251
Query: 791 FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVA 850
++ + + V S+A E + +A + P A
Sbjct: 252 PDSL-SLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETWQ---------------PCHA 295
Query: 851 QGLGTYQWLKEDVTTD 866
G G +W + T
Sbjct: 296 LGFGVDRWRSAPLLTT 311
>3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC,
target 9462A, protein structure initiative; 1.87A
{Bdellovibrio bacteriovorus HD100}
Length = 330
Score = 160 bits (407), Expect = 1e-43
Identities = 58/378 (15%), Positives = 124/378 (32%), Gaps = 84/378 (22%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL-EIHKENLL 555
++ YS Y ++ ++ + REG +L + DG G+ ++ P E+ +L
Sbjct: 3 KISYSPYTLKPVQSLNAA-----TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLE 57
Query: 556 DAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
+ LR + + + +A +A+
Sbjct: 58 EQLSDLR---------------------------------MGRMTTQIEQSIWLARRDAL 84
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
K + IK L+ ++ + L EG+ +K
Sbjct: 85 LRKEKKHVFDGG--------------EKIKNNYLLSHF-QDLKPGFLDG-LKNEGYNTVK 128
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD---CDLQYI 732
+K+ R D K+A+++ + + +R+D N ++Q +F + ++Y+
Sbjct: 129 VKMGR--DLQKEADMLTHIA---ASGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYV 183
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
E+P + +ALD DK K A IVIKP+ +
Sbjct: 184 EDPFPFDFHAWGEA-RKLAKIALDNQYDKV-PWG-----KIASAPFDVIVIKPAKTDVDK 236
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQG 852
Q+ V++ + +G+ + + L+ + + + G
Sbjct: 237 ----AVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAMELKDKYGDM----------ILESG 282
Query: 853 LGTYQWLKEDVTTDPISI 870
T++ + D +S
Sbjct: 283 CLTHRLYQMDSFAAELST 300
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase,
structural genom protein structure initiative, PSI,
nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A
3h70_A
Length = 342
Score = 161 bits (408), Expect = 1e-43
Identities = 59/380 (15%), Positives = 123/380 (32%), Gaps = 71/380 (18%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
K+ + + Y + + + R+ + L + G+ +GE +
Sbjct: 3 KLTALHFYKYSEPFKSQIVTPK----VTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYD 58
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMA 610
E + + + +F SF ++ + + + E P+ R + MA
Sbjct: 59 HETIASVKHVIE-----------QWFEDNRNKSFETYEAALKLVDSLENTPAARATIVMA 107
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ V S ++++ L
Sbjct: 108 LYQMFHVLPSFSVAYGATASGLSNKQLES--------------------------LKATK 141
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
T IKLK + I+ +R+ + +L +DAN + Q+ + L +
Sbjct: 142 PTRIKLKWTPQ-----IMHQIRVLRE-LDFHFQLVIDANESLDRQDFTQLQLL-AREQVL 194
Query: 731 YIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGG 790
YIEEP ++ + + + + P+ALDE D +N++E Y + +V+KP +GG
Sbjct: 195 YIEEPFKDISMLDEVADGTIPPIALDEKATSLL-DIINLIELYN---VKVVVLKPFRLGG 250
Query: 791 FENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVA 850
+ + HG V+ +E GL + + +
Sbjct: 251 IDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKGDY----------------PG 294
Query: 851 QGLGTYQWLKEDVTTDPISI 870
+ ++DV +
Sbjct: 295 DVTPAGYYFEQDVVAHSGIL 314
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super
family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2
d.54.1.1 PDB: 1jpm_A
Length = 366
Score = 148 bits (376), Expect = 5e-39
Identities = 87/385 (22%), Positives = 156/385 (40%), Gaps = 57/385 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI R+E S + L P ++ R+ + E I+ + + G+VG+GE P I +
Sbjct: 2 KIIRIETSRIAVPLTKPFKTAL----RTVYTAESVIVRITYDSGAVGWGEAPPTLVITGD 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
++ E + P L G S + + I + S + +EM
Sbjct: 58 SMDSIESAIH-----------HVLKPALLGKSLAGYEAILHDIQ-HLLTGNMSAKAAVEM 105
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ + A G LY + + +++ + S SP E+A+ A +++
Sbjct: 106 ALYDGWAQMCGLP----LYQM------LGGYRDTLETDYTV-SVNSPEEMAADAENYLKQ 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC-- 727
GF +K+KV + D D IQE+RK+VG ++LR+DAN+ W +EA+ ++D
Sbjct: 155 GFQTLKIKVGKD-DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGL 213
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
++ +E+PV + + K + + P+ DE++ + I IK
Sbjct: 214 GIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFT-----PRQAFEVLQTRSADLINIK 268
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLC 838
GG A I A+ G +V + E+ LG++A F++ + +
Sbjct: 269 LMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLML 328
Query: 839 K---------VMNRELCPPVAQGLG 854
K + P GLG
Sbjct: 329 KTDVFNGGITYSGSTISMPGKPGLG 353
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural
genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella
pneumoniae subsp}
Length = 381
Score = 146 bits (371), Expect = 3e-38
Identities = 70/387 (18%), Positives = 133/387 (34%), Gaps = 57/387 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEI---H 550
+ ++E + + P S + C+ I+ L DG G GE +
Sbjct: 6 TVEQIESWIVDVPTIRPHKLSM----TTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYG 61
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E+ + Y PLLKG + + + + A + + +
Sbjct: 62 VESPEAISSAIT-----------HYLTPLLKGQPADNLNALTARMN-GAIKGNTFAKSAI 109
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTL 666
E A+L+A G + L + T++ + + S + ++A L
Sbjct: 110 ETALLDAQGKALGLP----VSAL------LGGALQTALPVLWTLASGDTAKDIAEGEKLL 159
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
E A KLK+ R + D + + + +G R +RVD N+ W + +
Sbjct: 160 AEGRHRAFKLKIGAR-ELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAA 218
Query: 727 CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
+ IE+PV + +++ ++ + DE + + A G +
Sbjct: 219 MGVDLIEQPVSAHDNAALVRLSQQIETAILADEAVATAY-----DGYQLAQQGFTGAYAL 273
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K + GG + +AR AQ G E +G A + S L +
Sbjct: 274 KIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLHAWSTLP--LQWGT----- 326
Query: 844 ELCPPVAQGLGTYQWLKEDVTTDPISI 870
E+ P LK+D+ + P++
Sbjct: 327 EMFGP--------LLLKDDIVSVPLTF 345
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A
{Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A*
3k1g_A* 3kum_A*
Length = 354
Score = 143 bits (364), Expect = 1e-37
Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 62/389 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ +I+L T + + + I+ + E+G VGYGE P I E
Sbjct: 2 KIKQVHVRASKIKLKETFTIAL----GTIESADSAIVEIETEEGLVGYGEGGPGIFITGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L E + F + G + + I + P+ + +++
Sbjct: 58 TLAGTLETIE------------LFGQAIIGLNPFNIEKIHEVMD-KISAFAPAAKAAIDI 104
Query: 610 AILNAIAVKHGSSFLNILYPL--TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
A + + K LY L ++ I+ + I P +A A V
Sbjct: 105 ACYDLMGQKAQLP----LYQLLGGYDNQVITDITLGID---------EPNVMAQKAVEKV 151
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
+ GF +K+KV D ++ +R+ VG I+LR+DAN+ WT ++A++ + D
Sbjct: 152 KLGFDTLKIKVGT--GIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADY 209
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785
++ +E+PV ++ E + + + DE+ D + LE + I IK
Sbjct: 210 QIELVEQPVKRRDLEGLKYVTSQVNTTIMADESC----FDAQDALELVKKGTVDVINIKL 265
Query: 786 SVIGGFENAGLIARWAQRHG-KMAVVSAAFESGLGLSA------------YIIFSSYLEL 832
GG A I + + G + + A E+ +G++A + L
Sbjct: 266 MKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGL 325
Query: 833 QNAYLCKVM----NRELCPPVAQGLG-TY 856
+ A + + L A GLG ++
Sbjct: 326 ETAPVTGGVSLEAKPLLELGEAAGLGISH 354
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein;
structural genomics, unknown function, nysgxrc target
T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2
d.54.1.1
Length = 386
Score = 143 bits (363), Expect = 3e-37
Identities = 74/386 (19%), Positives = 136/386 (35%), Gaps = 61/386 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
I +E R+ L P +SY + + + E G+ G+GE+ E
Sbjct: 21 NIQSIETYQVRLPLKTPFVTSY----GRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYV 76
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E L+ ++ + +PLL + + + + + L
Sbjct: 77 QETLVTERFIIQ-----------QHLIPLLLTEAIEQPQEVSTIFE--EVKGHWMGKAAL 123
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
E AI + A + S L I + + + ++ V
Sbjct: 124 ETAIWDLYAKRQQKS----LTEF------FGPTRRKIPVGISLGIQEDLPQLLKQVQLAV 173
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E+G+ +KLK+ P D E + +R+ + + L VDAN +T + + L
Sbjct: 174 EKGYQRVKLKI----RPGYDVEPVALIRQHFPN-LPLMVDANSAYTLADLPQLQRL-DHY 227
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IK 784
L IE+P + D + E + LDE I L + G + +K
Sbjct: 228 QLAMIEQPFAADDFLDHAQLQRELKTRICLDENIRS-----LKDCQVALALGSCRSINLK 282
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
+GG A IA + Q + + + FESG+G + + F+S +
Sbjct: 283 IPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPG-------D 335
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
+ T ++ ED+ T+P +
Sbjct: 336 IS-------ATERYFYEDIITEPFIL 354
>3qld_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, isomerase; HET: MSE; 1.85A
{Alicyclobacillus acidocaldarius LAA1}
Length = 388
Score = 142 bits (360), Expect = 8e-37
Identities = 69/382 (18%), Positives = 135/382 (35%), Gaps = 40/382 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + L P +++ ++ ++ L DG G+ E L
Sbjct: 2 SLQTCVLHRLSLPLKFPMRTAH----GHIREKQAILVQLVDADGIEGWSECVALAEPTYT 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN 613
+ L+H + + + + +EMA+ +
Sbjct: 58 EECTDTAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMSVAAIEMAVWD 117
Query: 614 AIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTA 673
A + G L L + +++ A + ++S + VE+GF
Sbjct: 118 WYAARTGQP----LVGL------LGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRR 167
Query: 674 IKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIE 733
+KLK+A +D I+ VR + + + DAN ++ ++A L DLQ+IE
Sbjct: 168 VKLKIAPG----RDRAAIKAVRLRYPD-LAIAADANGSYRPEDAPVLRQL-DAYDLQFIE 221
Query: 734 EPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGF 791
+P+ + D+ K PV LDE++ + + + +KP +GGF
Sbjct: 222 QPLPEDDWFDLAKLQASLRTPVCLDESV----RSVRELKLTARLGAARVLNVKPGRLGGF 277
Query: 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQ 851
A G A V +E+G+G +I ++ + Y +L P
Sbjct: 278 GATLRALDVAGEAGMAAWVGGMYETGVGRVHGLIAAALPLM--RYAT-----DLGPS--- 327
Query: 852 GLGTYQWLKEDVTTDPISICHN 873
++ ++DV +PI+
Sbjct: 328 ----DRYFEQDVLKEPIAFVEP 345
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A
{Methylococcus capsulatus} PDB: 3rit_A
Length = 356
Score = 140 bits (355), Expect = 2e-36
Identities = 76/383 (19%), Positives = 137/383 (35%), Gaps = 55/383 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ L P ++ RS + I+ + DG +G G +P + E
Sbjct: 2 KIADIQVRTEHFPLTRPYRIAF----RSIEEIDNLIVEIRTADGLLGLGAASPERHVTGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L L L L G + + L P+ R L+M
Sbjct: 58 TLEACHAALD-----------HDRLGWLMGRDIRTLPRLCRELA-ERLPAAPAARAALDM 105
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ + +A G L + + TS+ I K E + A +
Sbjct: 106 ALHDLVAQCLGLP----LVEI--LGRAHDSLPTSVTI-----GIKPVEETLAEAREHLAL 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
GF +K+K+ D +D E ++ + + + R +RVD N+++ L L+++ +
Sbjct: 155 GFRVLKVKLCG--DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI 212
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
++IE+P + + + +A DE++ P + A P I IK
Sbjct: 213 EFIEQPFPAGRTDWLRALPKAIRRRIAADESL----LGPADAFALAAPPAACGIFNIKLM 268
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK- 839
GG A IA A+ G + ES + ++A + + YL+L ++
Sbjct: 269 KCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALACPATRYLDLDGSFDLAR 328
Query: 840 --------VMNRELCPPVAQGLG 854
+ + L GLG
Sbjct: 329 DVAEGGFILEDGRLRVTERPGLG 351
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown
function, nysgxrc target T2186, superfamily, protein
structure initiative, PSI; 2.90A {Listeria innocua}
SCOP: c.1.11.2 d.54.1.1
Length = 393
Score = 141 bits (357), Expect = 2e-36
Identities = 73/383 (19%), Positives = 140/383 (36%), Gaps = 55/383 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + L AP +SY ++ +I+ L E+G GYGE+ +
Sbjct: 21 YFQKARLIHAELPLLAPFKTSY----GELKSKDFYIIELINEEGIHGYGELEAFPLPDYT 76
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
+ + LPLL I + + +E+A
Sbjct: 77 EETLSSAILIIKE--------QLLPLLAQRKIRKPEEIQELFS--WIQGNEMAKAAVELA 126
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ +A A S L + I SIK+ I ++ + + V++G
Sbjct: 127 VWDAFAKMEKRS----LAKM------IGATKESIKVGVSIGLQQNVETLLQLVNQYVDQG 176
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
+ +KLK+A KD + ++ VRK ++ L DAN + ++ L L DL+
Sbjct: 177 YERVKLKIAPN----KDIQFVEAVRKSFP-KLSLMADANSAYNREDFLLLKEL-DQYDLE 230
Query: 731 YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSV 787
IE+P ++ D ++ + LDE I + +E+ G + +K +
Sbjct: 231 MIEQPFGTKDFVDHAWLQKQLKTRICLDENIRSVK-----DVEQAHSIGSCRAINLKLAR 285
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847
+GG +A IA + + + E+G+G + I ++ E V ++
Sbjct: 286 VGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNIALAARNEF-------VFPGDI-- 336
Query: 848 PVAQGLGTYQWLKEDVTTDPISI 870
+ ++ ED+ T +
Sbjct: 337 -----SASNRFFAEDIVTPAFEL 354
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A
{Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Length = 370
Score = 140 bits (355), Expect = 2e-36
Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 51/384 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + ++ + P S+ + + I+ + G VG GE +
Sbjct: 2 KIEAISTTIVDVPTRRPLQMSF----TTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWG 56
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
AE + + Y PLL G S+ + A S + +++A
Sbjct: 57 SESAETIKVIIDN--------YLAPLLVGKDASNLSQARVLMD-RAVTGNLSAKAAIDIA 107
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + A S + L I TSI I + S + ++ S +
Sbjct: 108 LHDLKARALNLS----IADL------IGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
K+K+ R P +D E I+ + K VG R +RVD N+ W Q A + +++ +
Sbjct: 158 RHNRFKVKLGAR-TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV 216
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+ +E+PV N + + E++G+ + DE++ + A V +K
Sbjct: 217 ELVEQPVPRANFGALRRLTEQNGVAILADESLSSLS-----SAFELARDHAVDAFSLKLC 271
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846
+GG N +A A+ G + +S +G +A + + L Y C EL
Sbjct: 272 NMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLP-SLPYGC-----ELI 325
Query: 847 PPVAQGLGTYQWLKEDVTTDPISI 870
P L + +T + I
Sbjct: 326 GP--------WVLGDRLTQQDLEI 341
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A
{Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A*
1sjb_A* 1sjc_A*
Length = 368
Score = 140 bits (355), Expect = 2e-36
Identities = 78/386 (20%), Positives = 138/386 (35%), Gaps = 62/386 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
K+ +E ++ L AP +S+ ++ RE +L G G+GE +
Sbjct: 2 KLSGVELRRVQMPLVAPFRTSF----GTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYS 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGL 607
E AE LR Y +P L ++ + L + + L
Sbjct: 57 SEYNDGAEHVLR-----------HYLIPALLAAEDITAAKVTPLLA--KFKGHRMAKGAL 103
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA+L+A H S + S+ + + ++ + +
Sbjct: 104 EMAVLDAELRAHERS----FAAE------LGSVRDSVPCGVSVGIMDTIPQLLDVVGGYL 153
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
+EG+ IKLK+ +P D E ++ VR++ G + L+VDAN +T +A + L
Sbjct: 154 DEGYVRIKLKI----EPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARL-DPF 208
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
L IE+P+ ++ + P+ LDE+I + G V + IK
Sbjct: 209 GLLLIEQPLEEEDVLGHAELARRIQTPICLDESIVSAR-----AAADAIKLGAVQIVNIK 263
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
P +GG+ A + HG E+GLG +A + +S
Sbjct: 264 PGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALASLPNF------------ 311
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
+ + T+P +
Sbjct: 312 ---TLPGDTSASDRFYKTDITEPFVL 334
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A*
3dg7_A*
Length = 367
Score = 140 bits (355), Expect = 2e-36
Identities = 69/383 (18%), Positives = 136/383 (35%), Gaps = 52/383 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI + + I P + E ++ ++ +DG VG E P + E
Sbjct: 2 KIVAIGAIPFSIPYTKPLRFAS----GEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEM 609
+ YF P L G + + + P+ + ++M
Sbjct: 58 TQTGIVAVIE-----------QYFAPALIGLTLTEREVAHTRMA--RTVGNPTAKAAIDM 104
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A+ +A+ S + + + + +++ ++ + VA
Sbjct: 105 AMWDALGQSLRLS----VSEM------LGGYTDRMRVSHMLGFDDPVKMVAEAERIRETY 154
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G K+KV RR D V++ +R++ G IEL VD NR W+ E+L + D DL
Sbjct: 155 GINTFKVKVGRR-PVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL 213
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV 787
+ EE + + + +P DE++ P ++ + AI IK +
Sbjct: 214 LFAEELCPADDVLSRRRLVGQLDMPFIADESV----PTPADVTREVLGGSATAISIKTAR 269
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCP 847
G + + A+ G V+ + +G + + F + E + + +
Sbjct: 270 TGFTG-STRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAFERTSRHAGE-------- 320
Query: 848 PVAQGLGTYQWLKEDVTTDPISI 870
L + + +D+ T P+ I
Sbjct: 321 -----LSNFLDMSDDLLTVPLQI 338
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 140 bits (355), Expect = 4e-36
Identities = 77/352 (21%), Positives = 128/352 (36%), Gaps = 41/352 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
+I + I + P S + + R ++ + E GYGE AP E
Sbjct: 8 RIDGVSLYEIVIPMKIPFQISS----GTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYL 62
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E L + L+ ++ LP++ G S + RCG+
Sbjct: 63 GETLETTKVILK-----------NHLLPMILGKEPLSIEEFNHLIK-NGIRGNHFARCGV 110
Query: 608 EMAILNAIAVKHGSSFLNIL-----YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
E A + IA K+ S ++ + + S I + +
Sbjct: 111 ENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQ 170
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
++EG+ IK+K+ P D E +QE R+ VG L DAN ++ + F
Sbjct: 171 VEESLQEGYRRIKIKI----KPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKA 226
Query: 723 LIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
+ + E+P+ + D+ + E P+ LDE++ + + E A GI
Sbjct: 227 M-DAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSR-----VAEFVAKLGISN 280
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
I IK +GG A I + A +G ESGLG I +S+
Sbjct: 281 IWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRG 332
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone
binding, isomeras structural genomics, PSI-2; HET: MUC;
1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A*
1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Length = 382
Score = 140 bits (354), Expect = 4e-36
Identities = 62/350 (17%), Positives = 118/350 (33%), Gaps = 36/350 (10%)
Query: 489 SLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE 548
SL I +E + + P + + + ++ L DG G GE +
Sbjct: 2 SLHASAIESIETIIVDLPTIRPHKLAM----HTMQNQTLVLIRLRCADGIEGLGESTTIG 57
Query: 549 IHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRC 605
+ + + PLL G S+ L + +
Sbjct: 58 GLAYGNESPDSIKTNIDR--------FVAPLLIGQDASNINAAMLRLE-QSIRGNTFAKS 108
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIAT 664
G+E A+L+A + G + L + + ++ + + S + ++A
Sbjct: 109 GIESALLDAQGKRLGLP----VSEL------LGGRVRDALPVAWTLASGDTAKDIAEAQK 158
Query: 665 TLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLI 724
L KLK+ + +D + ++K +G +RVD N+ W AL ++
Sbjct: 159 MLDLRRHRIFKLKIGAG-EVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRIL 217
Query: 725 KDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV 782
+ IE+P+ N +++ S P+ DE+I+ + A G ++
Sbjct: 218 GGNGIDLIEQPISRNNRAGMVRLNASSPAPIMADESIECVE-----DAFNLAREGAASVF 272
Query: 783 -IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
+K + GG A A+ G E G+G A L
Sbjct: 273 ALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTLN 322
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel,
metal-binding, metal binding; 1.95A {Thermus
thermophilus}
Length = 369
Score = 137 bits (348), Expect = 2e-35
Identities = 71/386 (18%), Positives = 133/386 (34%), Gaps = 62/386 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
+I E + + L +S+ + R +L L+ +G G GE
Sbjct: 2 RIEAAELRILELPLKFRFETSF----GVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYR 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E + A L FLP + G + + L P + L
Sbjct: 57 EETVAGARYLLE-----------EVFLPRVLGRDLPNPEALREALA--PFRGNPMAKAVL 103
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA + A G L+ + + ++++ + S + + +
Sbjct: 104 EMAFFDLWAKALGRP----LWQV------LGGVRQAVEVGVSLGIQPSVEDTLRVVERHL 153
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EEG+ IKLK+ P D EV++ VR+ L DAN ++ + L +
Sbjct: 154 EEGYRRIKLKI----KPGWDYEVLKAVREAFP-EATLTADANSAYSLANLAQLKRL-DEL 207
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
L YIE+P+ + D K E P+ LDE++ + K G +K
Sbjct: 208 RLDYIEQPLAYDDLLDHAKLQRELSTPICLDESLTGAE-----KARKAIELGAGRVFNVK 262
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
P+ +GG + + A+ G + E+G+G + + ++
Sbjct: 263 PARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLATLPGFTKP--------- 313
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
++ +ED+ + +
Sbjct: 314 -----GDVSSASRYWEEDIVEEALEA 334
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 137 bits (346), Expect = 5e-35
Identities = 78/384 (20%), Positives = 130/384 (33%), Gaps = 53/384 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI M+ + + + R E +L L E G+ G+GE +P +
Sbjct: 9 KIIAMDLWHLALPVVSARDHGI---GRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGT 65
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
+ L Y PL+ G I A + L+ A
Sbjct: 66 PEASYAALD-----------RYLRPLVIGRRVGDRVAIMDEAA-RAVAHCTEAKAALDSA 113
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+L+ ++ L + K +I + I +N ++ L +
Sbjct: 114 LLDLAGRISNLP----VWAL------LGGKCRDTIPLSCSI-ANPDFDADIALMERLRAD 162
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G IKLK R D D ++ + + +RVD N+ EA+ +
Sbjct: 163 GVGLIKLKTGFR-DHAFDIMRLELIARDFPE-FRVRVDYNQGLEIDEAVPRVLDVAQFQP 220
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+IE+PV + E + + + +P+ DE++ + + + AH GI V IK
Sbjct: 221 DFIEQPVRAHHFELMARLRGLTDVPLLADESVYGPE-----DMVRAAHEGICDGVSIKIM 275
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELC 846
GG A +AR A HG MA FE+GL A + L
Sbjct: 276 KSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAA--TPEITL--------- 324
Query: 847 PPVAQGLGTYQWLKEDVTTDPISI 870
+ +L ED+ P +
Sbjct: 325 --GCEFYQASYFLNEDILETPFRV 346
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 133 bits (336), Expect = 3e-34
Identities = 54/220 (24%), Positives = 91/220 (41%), Gaps = 23/220 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
P E A I + + + D ++ VR +G R +R+D N
Sbjct: 76 VPAVGPEEAARIVASSGCTTAKVKVAERGQ--SEANDVARVEAVRDALGPRGRVRIDVNG 133
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNML 770
W A+ L+ +L+Y+E+P +++ + +P+A DE+I + + DPL +
Sbjct: 134 AWDVDTAVRMIRLLDRFELEYVEQPCATVDELAEVRRRVSVPIAADESIRRAE-DPLRVR 192
Query: 771 EKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYL 830
+V+K +GG A R A+ G VVS+A E+ +GL+A + ++ L
Sbjct: 193 ---DAEAADVVVLKVQPLGGVRAA---LRLAEECGLPVVVSSAVETSVGLAAGVALAAAL 246
Query: 831 ELQNAYLCKVMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
P A GL T + L DV DP+
Sbjct: 247 PEL--------------PYACGLATLRLLHADVCDDPLLP 272
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible
chloromuconate cycloisomerase...; (beta/alpha)8-barrel;
3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Length = 368
Score = 133 bits (338), Expect = 4e-34
Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 39/335 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I ++E ++L P S I+ ++ G +GYGE +P IH E
Sbjct: 2 IITQVELYKSPVKLKEPFKISL----GILTHANNVIVRIHTASGHIGYGECSPFMTIHGE 57
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAIL 612
++ A ++L + G + + ++ +A+
Sbjct: 58 SMDTAFIVGQYLAKGLIGTSCLDIVS---------NSLLMD-AIIYGNSCIKSAFNIALY 107
Query: 613 NAIAVKHGSSFLNILYPL--TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+ A G LY + D+ I T + S P ++A+ A + + G
Sbjct: 108 DLAAQHAGLP----LYAFLGGKKDKIIQ---TDYTV-----SIDEPHKMAADAVQIKKNG 155
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQ 730
F IK+KV D E I+ +R+ G I LR+DAN+ W+ + A+E L++ ++Q
Sbjct: 156 FEIIKVKVGG--SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQ 213
Query: 731 YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIKPSV 787
+ EEPV + K + +P+ DE+ E+ + +K S
Sbjct: 214 HCEEPVSRNLYTALPKIRQACRIPIMADESCCNSF-----DAERLIQIQACDSFNLKLSK 268
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
G NA I R A++ V ES LG +A
Sbjct: 269 SAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTA 303
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP:
c.1.11.2 d.54.1.1 PDB: 2chr_A
Length = 370
Score = 132 bits (335), Expect = 1e-33
Identities = 70/387 (18%), Positives = 136/387 (35%), Gaps = 57/387 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
KI +E + + P S + + I+ +Y +G VG GE +
Sbjct: 2 KIDAIEAVIVDVPTKRPIQMSI----TTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWS 56
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E + + Y P L G + T+ A S + +
Sbjct: 57 AECAETIKIIVE-----------RYLAPHLLGTDAFNVSGALQTMA-RAVTGNASAKAAV 104
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTL 666
EMA+L+ A G S + L + ++I I + S + ++ S +
Sbjct: 105 EMALLDLKARALGVS----IAEL------LGGPLRSAIPIAWTLASGDTKRDLDSAVEMI 154
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
K+K+ R P D ++ + +G + LRVD N+ W Q A + ++
Sbjct: 155 ERRRHNRFKVKLGFR-SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEA 213
Query: 727 CDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
++ IE+PV +N + + + + + + + DE++ ++ V + +
Sbjct: 214 LGVELIEQPVGRENTQALRRLSDNNRVAIMADESLSTLA-SAFDLARD----RSVDVFSL 268
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K +GG IA A+ G + +S +G S + S +
Sbjct: 269 KLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSL---------- 318
Query: 844 ELCPPVAQGLGTYQWLKEDVTTDPISI 870
P L L + ++ +P+ I
Sbjct: 319 ----PFGCELIGPFVLADTLSHEPLEI 341
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI, protein structu initiative, nysgrc; 2.30A
{Roseovarius nubinhibens} PDB: 3fvd_B
Length = 378
Score = 132 bits (335), Expect = 1e-33
Identities = 65/334 (19%), Positives = 116/334 (34%), Gaps = 37/334 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+I R+ + L P S + L + ++G G+GE P +
Sbjct: 4 RITRLTVFHLDLPLAKPYWLSG--GRLKFDRLDSTYLRIDTDEGVTGWGEGCPWG---HS 58
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
L A A I+ P L G S + + + V+ ++MA
Sbjct: 59 YLPAHGP-------GLRAGIATLAPHLLGLDPRSLDHVNRVMDL-QLPGHSYVKSPIDMA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + G L+ L + + +T + I + I S +P ++ + +
Sbjct: 111 CWDILGQVAGLP----LWQL------LGGEAATPVPINSSI-STGTPDQMLGLIAEAAAQ 159
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ K+ DP +D I+ + + + D NR WT A+E ++ D
Sbjct: 160 GYRTHSAKIGGS-DPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD- 217
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+IE+P Q + P+ LDE + +F G V IKP+ +
Sbjct: 218 -WIEQPCQTLDQCAHVARRVANPIMLDECLHEFS-----DHLAAWSRGACEGVKIKPNRV 271
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A I + G + + L +A
Sbjct: 272 GGLTRARQIRDFGVSVGWQMHIEDVGGTALADTA 305
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target
9450D, isomerase, PSI-2, protein structure initiative;
2.20A {Corynebacterium glutamicum}
Length = 383
Score = 132 bits (335), Expect = 2e-33
Identities = 64/336 (19%), Positives = 131/336 (38%), Gaps = 36/336 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
I ++E + + L P + + + ++S++LE+G +GYGE
Sbjct: 7 TIQKVESRILDVPLIRP----HGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWG 62
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
E + Y P+L G + S I + L + +++A
Sbjct: 63 GESVETMKALVDG--------YLAPVLIGRAVSELAGIMADLE-RVVARARYAKAAVDVA 113
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ +A A + L + + + + V VA I + E
Sbjct: 114 MHDAWARSLNVP----VRDL------LGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEF 163
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G + KLK+ DP +D + E+ ++VG R+ LR+D N W + AL + ++ + +
Sbjct: 164 GNRSFKLKMGAG-DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV 222
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+ E+P + E + + + + V DE++ + L +++ ++ +K +
Sbjct: 223 ELFEQPTPADDLETLREITRRTNVSVMADESVWTPA-EALAVVKA----QAADVIALKTT 277
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG + IA A+ G + + E +G +A
Sbjct: 278 KHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAA 313
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 132 bits (333), Expect = 2e-33
Identities = 77/389 (19%), Positives = 136/389 (34%), Gaps = 68/389 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE---IH 550
KI E + R+ L +S+ + L + +G G E
Sbjct: 9 KIEAAEIVVARLPLKFRFETSF-----GVQTHKVVPLLILHGEGVQGVAEGTMEARPMYR 63
Query: 551 KENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
+E + A + LR FLP + G +F++ + LG + R +
Sbjct: 64 EETIAGALDLLR-----------GTFLPAILGQTFANPEAVSDALG--SYRGNRMARAMV 110
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
EMA + A G L L + +++ + + V
Sbjct: 111 EMAAWDLWARTLGVP----LGTL------LGGHKEQVEVGVSLGIQADEQATVDLVRRHV 160
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
E+G+ IKLK+ P D + ++ R+ I L VDAN +T +A L +
Sbjct: 161 EQGYRRIKLKI----KPGWDVQPVRATREAFPD-IRLTVDANSAYTLADAGRLRQL-DEY 214
Query: 728 DLQYIEEPVQNEEDIIKY---CEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-I 783
DL YIE+P+ +D++ + P+ LDE++ K G ++ +
Sbjct: 215 DLTYIEQPL-AWDDLVDHAELARRIRTPLCLDESVASAS-----DARKALALGAGGVINL 268
Query: 784 KPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNR 843
K + +GG + + AQ G ESG+G + I S+
Sbjct: 269 KVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST--------------- 313
Query: 844 ELCPPVAQG--LGTYQWLKEDVTTDPISI 870
L G ++ + D+ +P+
Sbjct: 314 -LSNFRLPGDTSSASRYWERDLIQEPLEA 341
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 132 bits (333), Expect = 2e-33
Identities = 79/386 (20%), Positives = 145/386 (37%), Gaps = 59/386 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI ++ S+ +I L ++ RS + + L L++G GYG I +
Sbjct: 4 KIIDIKTSIIKIPLKRTFITAV----RSTNHIDSLAVELTLDNGVKGYGVAPATTAITGD 59
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
L + +R F P++ G S + + + +++
Sbjct: 60 TLQGMQYIIR-----------EIFAPVILGSDLSDYKQTLELAF-KKVMFNSAAKMAIDL 107
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
A + +A + S + L + ++ SI I S + E VE
Sbjct: 108 AYHDLLAKEQDIS----VAKL------LGAKANSIVTDVSI-SCGNVAETIQNIQNGVEA 156
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
FTAIK+K D +D ++++ + + I+ R DAN+ W + +F I L
Sbjct: 157 NFTAIKVKTGA--DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSL 214
Query: 730 --QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIK 784
+ IE+PV + + + + + S +PV DE++ E+ I IK
Sbjct: 215 NVEIIEQPVKYYDIKAMAEITKFSNIPVVADESVFD-----AKDAERVIDEQACNMINIK 269
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
+ GG A I + A G +V ES G+ A F+ ++ + +
Sbjct: 270 LAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFAL---AEDITVA-----D 321
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
L P W+ +D+ +D I+
Sbjct: 322 LDPL--------DWVAKDLYSDYITF 339
>2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius
SP}
Length = 377
Score = 131 bits (331), Expect = 4e-33
Identities = 60/336 (17%), Positives = 117/336 (34%), Gaps = 41/336 (12%)
Query: 494 KICRMEYSLYRIQLC-APPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHK 551
KI ++ + + + P + + I+ + EDG++G+GE P+ +
Sbjct: 4 KIAEIQLFQHDLPVVNGPYRIAS----GDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYA 59
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLPLLKGS--FSSWIWSTLGIPACEIFPSVRCGLEM 609
E A + L G+ + + + + L++
Sbjct: 60 EAHAGGAL-----------AALEVLASGLAGAEALPLPLHTRMD-SLLCGHNYAKSALDI 107
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVE 668
A+ + + G ++ L + + S+ + P E A A
Sbjct: 108 AVHDLWGKRLGVP----VHEL------LGGALTDSVSSYYSL-GVMEPDEAARQALEKQR 156
Query: 669 EGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKDC 727
EG++ +++K+ R D E I++V + V G I L D NR WT ++AL F D
Sbjct: 157 EGYSRLQVKLGAR-PIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDI 215
Query: 728 DLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+E+P + ED+ + +DE + A +V +K S
Sbjct: 216 PF-VMEQPCNSFEDLEAIRPLCHHALYMDEDGTSLN-----TVITAAATSLVDGFGMKVS 269
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
IGG ++ + A+ + +A
Sbjct: 270 RIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAA 305
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural
genomics, mandelate racemase/muconatelactonizing
hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism}
PDB: 2pce_A
Length = 386
Score = 130 bits (330), Expect = 7e-33
Identities = 60/337 (17%), Positives = 101/337 (29%), Gaps = 37/337 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI R++ + + + R + I+S+ + G G+GE P
Sbjct: 4 KITRIDIHRTDLPVRGGV--YRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTY-- 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
+ A T A + P + G IW + + R L++A
Sbjct: 60 -IAAHAG-------GTRAALELLAPAILGMDPRQHDRIWDRMRD-TLKGHRDARAALDIA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ A G L + + + + + + I +P + + +
Sbjct: 111 CWDIAAQAAGLP----LCDM------TGGRVAGPVPVISSI-GGDTPEAMRAKVARHRAQ 159
Query: 670 GFTAIKLKVARR---ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
GF +K+ P DAE I DAN T + AL L+
Sbjct: 160 GFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPP 219
Query: 727 CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+E P + + LP+ LDE I L + V +K
Sbjct: 220 GLDIVLEAPCASWAETKSLRARCALPLLLDELIQTET-----DLIAAIRDDLCDGVGLKV 274
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
S GG A G + V S + +A
Sbjct: 275 SKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFAA 311
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein;
PSI-biology, structural genomics, NEW YORK structural
genomi research consortium; 2.40A {Sorangium cellulosum}
Length = 389
Score = 130 bits (330), Expect = 7e-33
Identities = 74/337 (21%), Positives = 124/337 (36%), Gaps = 42/337 (12%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I R+ I L P + ++ ++++ L DG++G+GE APL + E
Sbjct: 6 LIRRVSIEALDIPLHEPFGIAG----GAQERAANLLVTVELADGTLGFGEAAPLPAFNGE 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
+ + G +W + L + + RC +E
Sbjct: 62 TQDGSRAAAV------------SLREAVVGSDARAWRAVARALREASGGGAGAARCAIET 109
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
AIL+A+ + G L+ +T I I + SP A
Sbjct: 110 AILDALTKRAGMP----LWAFFGGSGT--ALTTDITI-----TTGSPERAEEAARRAAAM 158
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--C 727
GF A+K+KV R D I+ + L +D N T EAL +
Sbjct: 159 GFRALKVKVGGR-LAASDPARIEAIHA-AAPGASLILDGNGGLTAGEALALVAHARRLGA 216
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKP 785
D+ +E+PV + + + + +G+ VA DE+ +D L + + A + IK
Sbjct: 217 DVALLEQPVPRDDWDGMKEVTRRAGVDVAADESA-ASAEDVLRVAAERAATV---VNIKL 272
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A IA A+ G ++ ES L ++A
Sbjct: 273 MK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTA 308
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, unknown function, PSI-2, protein structure
initiative; 2.80A {Silicibacter pomeroyi}
Length = 378
Score = 130 bits (329), Expect = 8e-33
Identities = 66/335 (19%), Positives = 111/335 (33%), Gaps = 39/335 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
KI R+ + L P S + ++ L + G G+GE P +
Sbjct: 4 KITRITVYQVDLPLEHPYWLSG--GRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVP 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
A I P + G + + I A + ++M
Sbjct: 62 AHGPGIR-----------AGIETMAPFVLGLDPRRLLDVERAMDI-ALPGHLYAKSPIDM 109
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVE 668
A + G + L + T I + + KS E ++ +
Sbjct: 110 ACWDIAGQAAGLP----IADL------MGGGSRTPRPIASSV-GAKSVEETRAVIDRYRQ 158
Query: 669 EGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCD 728
G+ A +K+ D +D I++V + D NR WT Q+AL +D
Sbjct: 159 RGYVAHSVKIGG--DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH 216
Query: 729 LQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSV 787
+ E+P + +DI PV++DE + Q + A G+ + IK +
Sbjct: 217 V-MFEQPGETLDDIAAIRPLHSAPVSVDECLVTLQ-----DAARVARDGLAEVFGIKLNR 270
Query: 788 IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+GG A + A HG V A S L +
Sbjct: 271 VGGLTRAARMRDIALTHGIDMFVMATGGSVLADAE 305
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II,
NYSGXRC, enolase, structural genomics, protei structure
initiative, PSI-2; 1.93A {Azoarcus SP}
Length = 397
Score = 130 bits (329), Expect = 1e-32
Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 46/386 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPL--EIHK 551
KI ++E + + +G +L L+ ++G VG +
Sbjct: 4 KITKVEVIPISTPMKRAQLMRG----ATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRG 59
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLP-LLKG-SFSSW--IWSTLGIPACEIFPSVRCGL 607
E + +F P +L G + I + I + +
Sbjct: 60 ETQDSITSMIC-----------DFFAPKVLLGEDPTKIEKIVGRMDI-LTRDNNQAKATV 107
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
+ A+ + + + G +Y L K I + ++ P VA A ++
Sbjct: 108 DFALHDLVGKRFGVP----VYQLLG-----GKTIERIPLGLVL-GAGEPEAVAEEALAVL 157
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EGF +KLK D ++ EVR+ VG ++L +D N WTY +AL ++
Sbjct: 158 REGFHFVKLKAGG--PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKY 215
Query: 728 DLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IK 784
+L IE+P+ + + + + + P+ DE+ + D L ++ K G + IK
Sbjct: 216 NLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELH-DLLAIINK----GAADGLMIK 270
Query: 785 PSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRE 844
GG A A+ + SGL S + + + +
Sbjct: 271 TQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAG-- 328
Query: 845 LCPPVAQGLGTYQWLKEDVTTDPISI 870
P + + D+ +
Sbjct: 329 --PLHIHDCLNSRDIDNDIALNVPRF 352
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein;
enolase superfamily, prediction of function; HET: NSK;
1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Length = 369
Score = 129 bits (327), Expect = 1e-32
Identities = 72/382 (18%), Positives = 140/382 (36%), Gaps = 54/382 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + R+ L P SY S I+ + ++G +GYGE +
Sbjct: 2 KITAIHLYAIRLPLRNPFVISY----GSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGE 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEMA 610
++ P L G + + I + P+ + +++A
Sbjct: 58 SWES----------TFHTLKHTLTPALIGQNPMNIEKIHDMMD-NTIYGVPTAKAAIDIA 106
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + K +Y L I + + ++ S P +A A +++++
Sbjct: 107 CFDIMGKKLNQP----VYQL------IGGRYHEEFPVTHVL-SIADPENMAEEAASMIQK 155
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW-TYQEALEFGFLIKDCD 728
G+ + K+KV + +D + I+ VR++VG+ I +RVD N+ W L + +
Sbjct: 156 GYQSFKMKVGT--NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLN 213
Query: 729 LQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+ +IE+PV + + + ++ LP+ +DE + + + +++ V IK
Sbjct: 214 IDWIEQPVIADDIDAMAHIRSKTDLPLMIDEGLKSSR-EMRQIIKL----EAADKVNIKL 268
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK 839
GG A +A A+ G V + ES + SA + +EL
Sbjct: 269 MKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKIITSVELTGPLKFT 328
Query: 840 -------VMNRELCPPVAQGLG 854
+ GLG
Sbjct: 329 KDIGNLHYDVPFIRLNEKPGLG 350
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9440A, enolase superfamily,
PSI-2; 1.80A {Aspergillus oryzae RIB40}
Length = 371
Score = 128 bits (325), Expect = 2e-32
Identities = 53/334 (15%), Positives = 102/334 (30%), Gaps = 36/334 (10%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI R++ + Y+ R + I+ + + G G+GE P +
Sbjct: 5 KIARIDVFQVDLPYSGGVY--YLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNY-- 60
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
R A I+ P L G I + A + +++A
Sbjct: 61 ---IASHPR-----GVRAGIATMAPSLIGLDPRRVDRINDAMDD-ALLGHEDAKTAIDVA 111
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ G + L + + +T + + + I P ++ + +
Sbjct: 112 CWDIFGKSVGLP----VCEL------LGGRTNTRLPLISSI-YVGEPEDMRARVAKYRAK 160
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ +K++ +P+ DA+ I VDAN + + AL L+
Sbjct: 161 GYKGQSVKISG--EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLD 218
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+E P + I ++ +P+ DE + K + +K S
Sbjct: 219 FALEAPCATWRECISLRRKTDIPIIYDELATNEM-----SIVKILADDAAEGIDLKISKA 273
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG G V S + +A
Sbjct: 274 GGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAA 307
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 128 bits (324), Expect = 4e-32
Identities = 50/334 (14%), Positives = 106/334 (31%), Gaps = 37/334 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+I R+ LY+ L S + ++ + + G G GE P +
Sbjct: 4 RITRIR--LYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGEN--Y 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
++ E + P L G + + + + + + A
Sbjct: 60 MIAHSEGVDAFAR--------LAAPQLLGQDPRQVARMERLMDH-LVQGHGYAKAPFDAA 110
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+ + G ++ L + K + + +S E +
Sbjct: 111 FWDILGQATGQP----VWML------LGGKLCDGAPMYRVA-PQRSEAETRAELARHRAA 159
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G+ ++KV D D + I+ + + DAN+ W A+ +D D
Sbjct: 160 GYRQFQIKVGA--DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY 217
Query: 730 QYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVI 788
+E+P ++ E+ + + P+ LDE + M ++ I +K S +
Sbjct: 218 -ILEQPCRSYEECQQVRRVADQPMKLDECVTGLH-----MAQRIVADRGAEICCLKISNL 271
Query: 789 GGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A + + V ++ + +A
Sbjct: 272 GGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAA 305
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein
structure INI NEW YORK SGX research center for
structural genomics, nysgx; 2.20A {Azorhizobium
caulinodans}
Length = 377
Score = 128 bits (323), Expect = 4e-32
Identities = 61/336 (18%), Positives = 120/336 (35%), Gaps = 39/336 (11%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ R+ L + + S + +L + DG VG+GE AP E+
Sbjct: 7 VVERIRIFLVESPIKMARLQGVGNVKGSV---KRVLLEVTSADGIVGWGEAAPWEVFTGT 63
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTLGIPACEIFPSVRCGLEMA 610
A A Y PL+ G + + + + +EMA
Sbjct: 64 PEAAF-----------SALDIYLRPLILGAPIKRVRELMARMDK-MLVGHGEAKAAVEMA 111
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
+L+ + G S + L + + I + I ++ +V
Sbjct: 112 LLDILGKATGLS----VADL------LGGRVRDRIPLSFSI-ADPDFDADLERMRAMVPA 160
Query: 670 GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDL 729
G T K+K + ++ +++ +R + G RI+LR+D N+ T A++ +
Sbjct: 161 GHTVFKMKTGVK-PHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP 219
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
+IE+PV ++ + + + P+ DE+ D + ++ + + +K
Sbjct: 220 TFIEQPVPRRHLDAMAGFAAALDTPILADESCFDAV-DLMEVVRR----QAADAISVKIM 274
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
GG A + A G +E G+ L+A
Sbjct: 275 KCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAA 310
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006,
struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga
maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Length = 345
Score = 127 bits (320), Expect = 6e-32
Identities = 71/336 (21%), Positives = 126/336 (37%), Gaps = 43/336 (12%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
+I ++ SL R + P + + + LE G GYGE +P ++ E
Sbjct: 3 RIVNVKLSLKRYEYEKPFHITG----SVSSESRNVEVEIVLESGVKGYGEASPSFRVNGE 58
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSWIWSTLGIPACEIFPSVRCGLEMAI 611
+ ++ G ++ FPS++ ++ A
Sbjct: 59 RVEALLAIEN------------AVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFAT 106
Query: 612 LNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGF 671
L+A++ + G+ + L + + T + + A + EEGF
Sbjct: 107 LDALSQELGTQ----VCYLLGGKRD--EIETDKTV-----GIDTVENRVKEAKKIFEEGF 155
Query: 672 TAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD--CDL 729
IK+KV + +D E ++E+ K V + VDAN +T +EA+EF + D+
Sbjct: 156 RVIKIKVGE--NLKEDIEAVEEIAK-VTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDI 212
Query: 730 QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPS 786
E+PV ++ E + S PVA DE+ + + V V IK
Sbjct: 213 AVYEQPVRREDIEGLKFVRFHSPFPVAADESART-----KFDVMRLVKEEAVDYVNIKLM 267
Query: 787 VIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
G +A I A+ G ++ ES LG++
Sbjct: 268 K-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQ 302
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural genomics,
PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 126 bits (318), Expect = 2e-31
Identities = 53/337 (15%), Positives = 116/337 (34%), Gaps = 42/337 (12%)
Query: 494 KICRMEYSLYRIQL-CAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHK 551
KI + + + + P T + + + + ++ + + G G+GE P+ +
Sbjct: 24 KIAEIHVYAHDLPVKDGPYTIAS----STVWSLQTTLVKIVADSGLAGWGETCPVGPTYA 79
Query: 552 ENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLE 608
+ A ++ P L G + + + + ++
Sbjct: 80 PSHALGAR-----------AALAEMAPGLIGANPLQPLVLRRRMD-GLLCGHNYAKAAID 127
Query: 609 MAILNAIAVKHGSSFLNILYPLTEIDEEI-SKRSTSIKICALIDSNKSPVEVASIATTLV 667
+A + + +G + L + + + P E+A IA V
Sbjct: 128 IAAYDLMGKHYGVR----VADL------LGGVAAERVPSYYAT-GIGQPDEIARIAAEKV 176
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKV-GHRIELRVDANRNWTYQEALEFGFLIKD 726
EGF +++K+ R D E +++V +++ G L VD NR+ ++AL +
Sbjct: 177 AEGFPRLQIKIGGR-PVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPE 235
Query: 727 CDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKP 785
+E+P E+I + LDE+ + + + A G+ +K
Sbjct: 236 IPF-VLEQPCNTLEEIAAIRGRVQHGIYLDESGEDLS-----TVIRAAGQGLCDGFGMKL 289
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ IGG + + A+ + +A
Sbjct: 290 TRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAA 326
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 124 bits (313), Expect = 3e-31
Identities = 67/350 (19%), Positives = 122/350 (34%), Gaps = 48/350 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ ++ L P + SR ++ L E+G G GE P + E+
Sbjct: 3 HMRTVKVFEEAWPLHTPFVIAR----GSRSEARVVVVELE-EEGIKGTGECTPYPRYGES 57
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMAILN 613
Q+ S L KG + L A R L+ A+ +
Sbjct: 58 DASVMAQIM-----------SVVPQLEKGLTREELQKILPAGA------ARNALDCALWD 100
Query: 614 AIAVKHGSSFLNIL-YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFT 672
A + S +++ L E T+ + +P ++A+ A+TL + G
Sbjct: 101 LAARRQQQSLADLIGITLPETVI------TAQTV-----VIGTPDQMANSASTLWQAGAK 149
Query: 673 AIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI 732
+K+K+ D +E + +R V L VDAN +W + L+ D + +
Sbjct: 150 LLKVKL----DNHLISERMVAIRTAVPD-ATLIVDANESWRAEGLAARCQLLADLGVAML 204
Query: 733 EEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
E+P+ ++D LP+ DE+ + L L+ + IK GG
Sbjct: 205 EQPLPAQDDAALENFIHPLPICADESC--HTRSNLKALKGRYE----MVNIKLDKTGGLT 258
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS---YLELQNAYLCK 839
A +A A+ G ++ + +SA + + +L
Sbjct: 259 EALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQVSFADLDGPTWLA 308
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural
genomics, enolase, epimerase, PSI-2, protein STRU
initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Length = 365
Score = 123 bits (310), Expect = 2e-30
Identities = 70/384 (18%), Positives = 125/384 (32%), Gaps = 58/384 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I + + L P + ++ ++ + L DG++G GE AP + E
Sbjct: 6 TIQAISAEAINLPLTEPFAIAS----GAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGE 61
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIF--PSVRCGLEMA 610
+ L G+ + + RCGLEMA
Sbjct: 62 TQTGTSAAIE------------RLQSHLLGADVRGWRKLAAMLDHAEHEAAAARCGLEMA 109
Query: 611 ILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEG 670
+L+A+ + L+ + T + I + V A+ A ++ G
Sbjct: 110 MLDALTRHYHMP----LHVF--FGGVSKQLETDMTI-----TAGDEVHAAASAKAILARG 158
Query: 671 FTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK--DCD 728
+IK+K A D D ++ + + L VD N + + AL F K
Sbjct: 159 IKSIKVKTAGV-DVAYDLARLRAIHQAAP-TAPLIVDGNCGYDVERALAFCAACKAESIP 216
Query: 729 LQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIV-AIVIKP 785
+ E+P+ ++ + + +SG VA DE+ + D + + A G I IK
Sbjct: 217 MVLFEQPLPREDWAGMAQVTAQSGFAVAADESA-RSAHD----VLRIAREGTASVINIKL 271
Query: 786 SVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS------YLELQNAYLCK 839
G + AQ G ++ ES L +S ++ +++L
Sbjct: 272 MK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAGNGGFDFIDLDTPLFIA 330
Query: 840 ---------VMNRELCPPVAQGLG 854
L G G
Sbjct: 331 EHPFIGGFAQTGGTLQLADVAGHG 354
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Length = 393
Score = 118 bits (299), Expect = 8e-29
Identities = 75/345 (21%), Positives = 121/345 (35%), Gaps = 51/345 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLE-IHKE 552
I + + I L P + ++ ++++ L DG+ GYGE AP + E
Sbjct: 28 TIRALTVAPLDIPLHEPFGIAS----GAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGE 83
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SFSSW--IWSTLGIPACEIFPSVRCGLEM 609
A + L++G W I L + S RC +E
Sbjct: 84 TQDMAHAAIL------------AARSLVEGADVREWRRIALALP-ALPGMTGSARCAIET 130
Query: 610 AILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE 669
AIL+A+ + L+ T + I + S A A +V
Sbjct: 131 AILDALTRRARLP----LWAFFGGAAT--SLETDVTI-----TTGSVTAAARAAQAIVAR 179
Query: 670 GFTAIKLKV-------ARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
G T IK+K+ D I +R V L +D N +T +AL
Sbjct: 180 GVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRD-VAPTARLILDGNCGYTAPDALRLLD 238
Query: 723 LIKDCDLQ--YIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI 778
++ + E+PV +EE + + +PVA DE++ D + A
Sbjct: 239 MLGVHGIVPALFEQPVAKDDEEGLRRLTATRRVPVAADESV-ASATD----AARLARNAA 293
Query: 779 V-AIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
V + IK G E A IA A+ G ++ ES L ++
Sbjct: 294 VDVLNIKLMKCGIVE-ALDIAAIARTAGLHLMIGGMVESLLAMTV 337
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small
metabolism, PSI-II, NYSGXRC, structural genomics, PR
structure initiative; 1.95A {Sinorhizobium meliloti}
Length = 384
Score = 115 bits (290), Expect = 1e-27
Identities = 62/343 (18%), Positives = 120/343 (34%), Gaps = 52/343 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI + + L P SY ++ + +DG+VG GE + +
Sbjct: 5 KISNVRVRPLVLPLKQPYHWSYGIRESFAVN----LIEIEADDGTVGIGE-CTVAPDQT- 58
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTL--------GIPACEIFPS 602
T A + L G + + + + G
Sbjct: 59 --------------GTAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQ 104
Query: 603 VRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASI 662
+ G++MA+ + G ++ L ++ + ++ E+A
Sbjct: 105 IFSGIDMAMWDLQGKLAGLP----VHQLLG-----GAHRKAVGYFYFL-QGETAEELARD 154
Query: 663 ATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGF 722
A +G LKV R D E+ VR ++G LR+DAN W+ +A+
Sbjct: 155 AAVGHAQGERVFYLKVGR--GEKLDLEITAAVRGEIG-DARLRLDANEGWSVHDAINMCR 211
Query: 723 LIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
++ D+++IE+P + + E+ G+P+ D+ D + +
Sbjct: 212 KLEKYDIEFIEQPTVSWSIPAMAHVREKVGIPIVADQAAFTLY-DVYEICRQ----RAAD 266
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
++ I P IGG + A A+ G + ++F +G+ A
Sbjct: 267 MICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCA 309
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 111 bits (280), Expect = 2e-26
Identities = 68/342 (19%), Positives = 122/342 (35%), Gaps = 47/342 (13%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP------L 547
R+ ++R + P +S+ + R ++ + DG+VG+GEV
Sbjct: 11 TPARVRAHVFRYPVSTPVKTSFGTMHD----RPAVLVEVEDSDGAVGWGEVWCNFPACGA 66
Query: 548 EIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGL 607
E + E L LL A + L+ + + G P GL
Sbjct: 67 EHRARLV---ETVLAPLLTARAFADPAQAFAHLEARTA-VLAIQTGEPG--PLAQAIAGL 120
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLV 667
++A+ + A + G L+ + I + A S +P +
Sbjct: 121 DIALCDLAARRAGQP----LWAW------LGGSGDRIGVYA---SGINPENPEDVVARKA 167
Query: 668 EEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDC 727
EG+ A KLKV D +D VR+ +G L DAN+ W A + +
Sbjct: 168 AEGYRAFKLKVGF--DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPA 225
Query: 728 DLQYIEEPV---QNEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAI 781
L ++EEP+ + + + + + +P+A E + F+ L + +
Sbjct: 226 QLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFET----ALAA----RSLRV 277
Query: 782 V-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ + GGF +AR G + +G+GL A
Sbjct: 278 MQPDLAKWGGFSGCLPVARAVVAAG-LRYCPHYLGAGIGLQA 318
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative;
1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Length = 398
Score = 108 bits (273), Expect = 2e-25
Identities = 66/391 (16%), Positives = 136/391 (34%), Gaps = 68/391 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI ++ + + L P TSS+ ++ + + G G+GE
Sbjct: 25 KITDVDVWVVNLPLVNPFTSSFETKTGETRT----VVRVRTDSGVEGWGETMWGA----- 75
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKG---SFSSWIWSTL---GIPACEIFPSVRCGL 607
A + P L G + + +
Sbjct: 76 --------------PVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAV 121
Query: 608 EMAILNAIAVKHGSSFLNILYPLTEI------DEEISKRSTSIKICALIDSNKSPVEVAS 661
++A +A+ K +T++ DE + P +A
Sbjct: 122 DVACWDAMG-KA----TGQ--SVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAE 174
Query: 662 IATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
A +VEE GF A+KLK D D +++ VR+ + + LRVD N W+ +++
Sbjct: 175 HAVRVVEEGGFDAVKLKGTT--DCAGDVAILRAVREALPG-VNLRVDPNAAWSVPDSVRA 231
Query: 721 GFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
G +++ DL+Y+E+P E + + + +P+ + + +F+ D + V
Sbjct: 232 GIALEELDLEYLEDPCVGIEGMAQVKAKVRIPLCTNMCVVRFE-DFAPAMRL----NAVD 286
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCK 839
++ GG +A + G + + E G+ +A++ S
Sbjct: 287 VIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGGELGIATAAHLAVVSST--------- 337
Query: 840 VMNRELCPPVAQGLGTYQWLKEDVTTDPISI 870
P +++ + + +L D +P+ +
Sbjct: 338 -------PVLSRAIDSMYYLHADDIIEPLHL 361
>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase,
L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides
thetaiotaomicron} PDB: 3iji_A* 3ijq_A*
Length = 338
Score = 106 bits (268), Expect = 3e-25
Identities = 73/373 (19%), Positives = 138/373 (36%), Gaps = 55/373 (14%)
Query: 497 RMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKENLLD 556
+M + Y ++L T + SR + + +G GYGE + E +
Sbjct: 2 KMTFFPYELKLRHVFTVAT----YSRTTTPDVQVEIE-YEGVTGYGEASMPPYLGETVES 56
Query: 557 AEEQLRFLLHFMTGAKISYFLPLLKGSFS-SWIWSTLGIPACEIFPSVRCGLEMAILNAI 615
L+ L F I S + + + +++A+ + +
Sbjct: 57 VMNFLK-----------KVNLEQFSDPFQLEDILSYVD-SLSPKDTAAKAAVDIALHDLV 104
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIK 675
G+ Y + +++E + T+ I +P V + F +K
Sbjct: 105 GKLLGAP----WYKIWGLNKEKTPS-TTFTI-----GIDTPDVVRAKTK-ECAGLFNILK 153
Query: 676 LKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQE-ALEFGFLIKDCDLQYIEE 734
+K+ R D E+I+ +R + + VDAN+ W ++ AL+ +K+ + IE+
Sbjct: 154 VKLGRDN----DKEMIETIRSVT--DLPIAVDANQGWKDRQYALDMIHWLKEKGIVMIEQ 207
Query: 735 PV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
P+ + +DI ++S LPV DE++ + D + L+ I IK G
Sbjct: 208 PMPKEQLDDIAWVTQQSPLPVFADESL-QRLGD-VAALKGAFT----GINIKLMKCTGMR 261
Query: 793 NAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSS---YLELQNAYLCK--------VM 841
A + A G +V E+ +SA FS + +L L V+
Sbjct: 262 EAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAVDFADLDGNLLISNDRFKGVEVV 321
Query: 842 NRELCPPVAQGLG 854
N ++ G+G
Sbjct: 322 NGKITLNDLPGIG 334
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A*
2mnr_A 1mns_A
Length = 359
Score = 104 bits (261), Expect = 4e-24
Identities = 55/352 (15%), Positives = 111/352 (31%), Gaps = 53/352 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKE 552
I + + L P ++ + ++ L G VG+ + A + +
Sbjct: 5 LITGLRTRAVNVPLAYPVHTAVGTVGTAPLV----LIDLATSAGVVGHSYLFAYTPVALK 60
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
+L + + ++ + +
Sbjct: 61 SLKQLLDDMA---------------AMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAA 105
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
G++MA +A+ H + L L + + ++ S A T
Sbjct: 106 GIDMAAWDALGKVHETP----LVKL------LGANARPVQAYDSH-SLDGVKLATERAVT 154
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725
E GF A+K ++ +D V++ +R+ VG + VD N++ A++ ++
Sbjct: 155 AAELGFRAVKTRIGYP-ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 213
Query: 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVA 780
+ +IEEP + E + + +PV + E ++ K L G
Sbjct: 214 QEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFK----ALSI----GACR 265
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLE 831
+ IGG + AQ+ G E L A + +LE
Sbjct: 266 LAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLE 317
>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase,
magnesium binding, enzyme function initiative, enolase,
isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A
4dhg_A
Length = 441
Score = 100 bits (250), Expect = 2e-22
Identities = 58/320 (18%), Positives = 108/320 (33%), Gaps = 47/320 (14%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL--------RFLLHFMTGAKISYFLPLL 580
I+ + ++G G GE H E + A +L + + + + +
Sbjct: 55 IVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLDVYALHRIYRRVADVVGANIVTDM 114
Query: 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHG---SSFL------------N 625
G S + V E+A L+ G + L
Sbjct: 115 HGLTGSSSRV-------KTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAY 167
Query: 626 ILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI 685
+ Y + R + VA + E GF +IKLK P
Sbjct: 168 LFYKWAGHPGKPEDRF--------GPALDPDGIVAQARLLIGEYGFRSIKLKGGVF-PPE 218
Query: 686 KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY 745
++AE IQ +R + LR+D N WT + ++ G + L+Y+E+P + + +
Sbjct: 219 QEAEAIQALRDAFPG-LPLRLDPNAAWTVETSIRVGRALDG-VLEYLEDPTPGIDGMARV 276
Query: 746 CEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRH 804
E +P+A + + + +E+ + ++ I GG + IA
Sbjct: 277 AAEVPMPLATNMCVVTPE-HLPAAVER----RPIGVLLIDHHYWGGLVRSAHIATLCATF 331
Query: 805 GKMAVVSAAFESGLGLSAYI 824
G + + G+ L+A
Sbjct: 332 GIELSMHSNSHLGISLAAMT 351
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 99.3 bits (248), Expect = 3e-22
Identities = 60/343 (17%), Positives = 127/343 (37%), Gaps = 52/343 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI +E I F + I+ ++ ++G G GE++
Sbjct: 2 KITDLELHAVGIPRHTG------------FVNKHVIVKIHTDEGLTGIGEMSDFSHLPLY 49
Query: 554 LLDAEEQLRFLLHFMTG---AKISYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLEMA 610
+D + + LL + G + L +F ++ +R G++ A
Sbjct: 50 SVDLHDLKQGLLSILLGQNPFDLMKINKELTDNFPETMYYYEK------GSFIRNGIDNA 103
Query: 611 ILNAIAVKHGSSFLNILYPLTE-----IDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
+ + A K+ L+I +++ + E+I ++ +
Sbjct: 104 LHDLCA-KY----LDI--SVSDFLGGRVKEKIKVCYP----IFRHRFSEEVESNLDVVRQ 152
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR-VDANRNWTYQEALEFGFLI 724
+E+GF +L V + + D E + V+++ G R+ ++ D + +++A +
Sbjct: 153 KLEQGFDVFRLYVGK--NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRL 210
Query: 725 KDCDL--QYIEEPV--QNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVA 780
DL + IE P + + + + ++ + E + F+ M++K +
Sbjct: 211 TKYDLGLEMIESPAPRNDFDGLYQLRLKT--DYPISEHVWSFK-QQQEMIKK----DAID 263
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
I I P IGG +A A A+ K V+ E +G +A
Sbjct: 264 IFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTAA 306
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase,
magnesium binding site, lyase; HET: P4C; 1.80A
{Bradyrhizobium SP} PDB: 3tte_A*
Length = 383
Score = 98.5 bits (246), Expect = 5e-22
Identities = 55/326 (16%), Positives = 100/326 (30%), Gaps = 52/326 (15%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEV-APLEIHKE 552
I + + P +++ + ++ + + G G+ + A + +
Sbjct: 28 AITGVTARAVITPMKRPLRNAFGVIDSGPLV----LIDVTTDQGVTGHSYLFAYTRLALK 83
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
L+ E + L G + + +
Sbjct: 84 PLVHLVEDIG---------------RELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVS 128
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATT 665
GL+MA +A+ G + L + + I + + ++ T
Sbjct: 129 GLDMAFWDALGQLAGKP----VVEL------LGGSARPIPAYDSYGVLDARDDERTLRTA 178
Query: 666 LVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK 725
E GF AIK K D D +I+ +R +G I L +D N++ EA +
Sbjct: 179 CDEHGFRAIKSKGGH-GDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLA 237
Query: 726 DCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGIVA 780
D DL +IEEPV N E S +P+ E F + + G
Sbjct: 238 DYDLTWIEEPVPQENLSGHAAVRERSEIPIQAGENWWFPRGFAE----AIAA----GASD 289
Query: 781 IV-IKPSVIGGFENAGLIARWAQRHG 805
+ +GG +A A
Sbjct: 290 FIMPDLMKVGGITGWLNVAGQADAAS 315
>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme;
enolase,metal-binding,PSI-II, NYSGXRC, structural
genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A
Length = 398
Score = 98.2 bits (245), Expect = 7e-22
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 16/166 (9%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
+ +A E G +K KV +DA I R+ G + +
Sbjct: 158 AIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGL-SAAEDAARITAAREAAGDDFIICI 216
Query: 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKY---CEESGLPVALDE---TID 760
DAN+ + A++ I D ++++ EEPV+ D + +PV + +
Sbjct: 217 DANQGYKPAVAVDLSRRIADLNIRWFEEPVEWHNDKRSMRDVRYQGSVPVCAGQTEFSAS 276
Query: 761 KFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+ ++E A + + S GG A A +
Sbjct: 277 GCRD----LMETGA----IDVCNFDSSWSGGPTAWLRTAAIATSYD 314
Score = 30.7 bits (70), Expect = 2.6
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 473 TLNVLSQFSVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSL 532
+L+ + D + I R+E L S+ R + +
Sbjct: 2 SLHDQRVHAERDPLDPQAHGLTITRIETIPMVAPLAREFRGSHYHMTH----RATIVTRV 57
Query: 533 YLEDGSVGYGEVAP 546
+ + G +G
Sbjct: 58 HTDAGIIGEAYTGD 71
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 96.7 bits (241), Expect = 4e-21
Identities = 54/319 (16%), Positives = 115/319 (36%), Gaps = 45/319 (14%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQL--------RFLLHFMTGAKISYFLPLL 580
++ L + G G GE +H E L A + + ++ A L
Sbjct: 60 VIQLDTDAGLTGLGETYADTVHLERLQAAAHAIVGRSVFSTNVIRALISDA-------LG 112
Query: 581 KGSFSSWIWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTE-----IDE 635
I + + V E+A L+ + P+++ + +
Sbjct: 113 GDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQG-QV----TGR--PVSDLLGGAVRD 165
Query: 636 EI--------SKRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIK 686
+ + + P + + A +++E GF+AIKLK P +
Sbjct: 166 AVPFSAYLFYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVF-APEE 224
Query: 687 DAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
+ ++ +R LR+D N WT Q +++ ++ L+Y+E+P + + +
Sbjct: 225 EMAAVEALRAAFP-DHPLRLDPNAAWTPQTSVKVAAGLEGV-LEYLEDPTPGLDGMAEVA 282
Query: 747 EESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
++ +P+A + + F + K + V +V GG + + L+A G
Sbjct: 283 AQAPMPLATNMCVVAFD-QLPAAVAKNS----VQVVLSDHHYWGGLQRSRLLAGICDTFG 337
Query: 806 KMAVVSAAFESGLGLSAYI 824
+ + G+ L+A +
Sbjct: 338 LGLSMHSNSHLGISLAAMV 356
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily;
structural genomics, predicted mandelate racemase, PSI;
2.02A {Rhodobacter sphaeroides}
Length = 401
Score = 95.9 bits (239), Expect = 4e-21
Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 22/196 (11%)
Query: 639 KRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVAR--RADPIKDAEVIQEVRK 696
S + A + +P E A +GF A+K R DA+ I R+
Sbjct: 129 SASHGKRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAARE 188
Query: 697 KVGHRIELRVDANRNWTY--QEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESG 750
+G +L VD + + + A + + ++EEP + + +
Sbjct: 189 GLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLEEPFD-AGALAAHAALAGRGAR 247
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGK 806
+ +A E Q ++++ G + + I IGG A +A AQ G
Sbjct: 248 VRIAGGEAAHNFHMAQ----HLMDY----GRIGFIQIDCGRIGGLGPAKRVADAAQARG- 298
Query: 807 MAVVSAAFESGLGLSA 822
+ V+ F S L LSA
Sbjct: 299 ITYVNHTFTSHLALSA 314
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel,
octamer, structural genomics, PSI; 1.80A {Bacillus
subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Length = 382
Score = 95.1 bits (237), Expect = 7e-21
Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
DS + S +++GF IK+K+ +D I ++ G I + +DAN+
Sbjct: 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGT-SFKEDVRHINALQHTAGSSITMILDANQ 193
Query: 711 NWTYQEALEFGFLIKD-CDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
++ A ++ + ++ ++EEP+ +D +PVA E ++
Sbjct: 194 SYDAAAAFKWERYFSEWTNIGWLEEPLPFDQPQDYAMLRSRLSVPVAGGENMKGPAQYV- 252
Query: 765 DPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+L + + I+ + G + + A+ G + + A++ L
Sbjct: 253 ---PLLSQ----RCLDIIQPDVMHVNGIDEFRDCLQLARYFG-VRASAHAYDGSLSRLY 303
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.48A {Mesorhizobium loti}
Length = 389
Score = 94.7 bits (236), Expect = 9e-21
Identities = 57/346 (16%), Positives = 116/346 (33%), Gaps = 58/346 (16%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
+ + ++ S + + L L E G VG G + L +
Sbjct: 4 SLSHFRITRFQFARDRVIGDSQVRADD----VNVAALELVSESGEVGLGFIQTLFNPLPD 59
Query: 554 LLDAEEQLRFLLHFMTGAKISYFLPLLKGS---------FSSWIWSTLGIPACEIFPSVR 604
+ E P LKG+ +
Sbjct: 60 QQEIESVFE-----------HEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFH----- 103
Query: 605 CGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKI-CALIDSNKSPVEVASIA 663
+++A+ + A + G L+ L + R +K + +D + S+
Sbjct: 104 EAVQVALWDLAAKEAGLP----LHVL------LGSRRNRVKAYASGLDFHLDDDAFVSLF 153
Query: 664 TTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFL 723
+ G++A K+KV R D +D ++ ++ V ++ +D N WT +EAL
Sbjct: 154 SHAASIGYSAFKIKVGHR-DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVA 212
Query: 724 IKD--CDLQYIEEPVQNEEDIIKYCE----ESGLPVALDETIDKFQKDPLNMLEKYAHPG 777
I++ DL ++E+P+ D + + E +D +LE +A
Sbjct: 213 IREAGHDLLWVEDPIL-RHDHDGLRTLRHAVTWTQINSGEYLDLQ--GKRLLLEAHA--- 266
Query: 778 IVAIVIKPSVIGGFENAGLIARWAQRHG-KMAVVSAAFESGLGLSA 822
A ++ G + I A G +++ + E+G+ ++
Sbjct: 267 --ADILNVH--GQVTDVMRIGWLAAELGIPISIGNTFLEAGVHMAV 308
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha
proteobacterium BAL199}
Length = 390
Score = 94.6 bits (236), Expect = 1e-20
Identities = 61/331 (18%), Positives = 105/331 (31%), Gaps = 57/331 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP-LEIHKE 552
++ ++L P T+ ++ + E+G G + P + +
Sbjct: 29 TFRKLTARPVLLKLQRPVTARIATIPDWPLI----LIDIETEEGVPGRAYLEPYVPKAMK 84
Query: 553 NLLDAEEQLRFLLHFMTGAKISYFLPLLKGS-------FSSWIWSTLGIPACEIFPSVRC 605
L+ A + +L G + S + +
Sbjct: 85 YLVPALHDMS---------------DMLAGQPLAPAEIYDKTRKSLHFVGYAGLSMIAAS 129
Query: 606 GLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICA-----LIDSNKSPVEVA 660
G++MA+ +A+A L L + S+K L + E
Sbjct: 130 GVDMAVWDALARAANMP----LCTL------LGGTPGSVKAYNSNGLWLKSPAEVAAEAV 179
Query: 661 SIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEF 720
+ GF +KL++ R DP D E + V VG L VD N+ EA+
Sbjct: 180 ELKAEGQGTGFKGLKLRMGR-DDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHR 238
Query: 721 GFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAH 775
I D L++IEEPV N + + + P+ + E + + L+
Sbjct: 239 TRQIDDLGLEWIEEPVVYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQ----ALQA--- 291
Query: 776 PGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
G +V IGG A A G
Sbjct: 292 -GACDLVMPDFMRIGGVSGWMRAAGVAGAWG 321
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase
like fold, nysgxrc target T1523, PSI, protein structure
initiative; 1.86A {Bradyrhizobium japonicum} SCOP:
c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Length = 392
Score = 92.9 bits (231), Expect = 4e-20
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 11/162 (6%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
K + ++ G+ +K+K+ A +D I+ V +++G +L VDAN
Sbjct: 160 YYPGKGLSMLRGEMRGYLDRGYNVVKMKIGG-APIEEDRMRIEAVLEEIGKDAQLAVDAN 218
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ + + + +++D L + EE + E P+A E + +
Sbjct: 219 GRFNLETGIAYAKMLRDYPLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSHQDAR- 277
Query: 765 DPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
N+L + ++ G + HG
Sbjct: 278 ---NLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHG 316
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A* 3zvi_A 3zvh_A
Length = 413
Score = 91.7 bits (227), Expect = 1e-19
Identities = 47/331 (14%), Positives = 105/331 (31%), Gaps = 45/331 (13%)
Query: 526 EGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SF 584
E + L LEDG V +G+ A ++ FL P L G
Sbjct: 51 ESISVLLVLEDGQVAHGDCAAVQY----SGAGGRDPLFLAKDFIPVIEKEIAPKLIGREI 106
Query: 585 SSW--IWSTLGIPACE---IFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639
+++ + + ++R G+ AIL+A+A + ++ E +
Sbjct: 107 TNFKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR--DEYNPGAEI 164
Query: 640 RSTSIKICALIDSNKSPVEVASI--ATTLVEEGFTAIKLKVARRADPIKDA-----EVIQ 692
+ + D V+ I A L ++ K+ + + + + + I
Sbjct: 165 NAVPV-FAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRII 223
Query: 693 EVRKKVGHRIELRVD------ANRNWTYQEALEFGFLIKDCDLQY---IEEPV--QNEED 741
++R + + +D A + + ++ + + + IE P+ ++ +
Sbjct: 224 KLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQK 283
Query: 742 IIK---------YCEESGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFE 792
++ + DE + + D + A + IK +GG
Sbjct: 284 QMEAMRDLRAELDGRGVDAELVADEWCNTVE-DVKFFTDNKA---GHMVQIKTPDLGGVN 339
Query: 793 NAGLIARWAQRHGKMAVVS-AAFESGLGLSA 822
N + + +G A E+
Sbjct: 340 NIADAIMYCKANGMGAYCGGTCNETNRSAEV 370
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A
{Gibberella zeae}
Length = 445
Score = 91.3 bits (227), Expect = 2e-19
Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 655 SPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
P V A +++E GF AIKLK P + I+ + K + LR+D N WT
Sbjct: 191 DPEGVVKQAKKIIDEYGFKAIKLKGGVF-PPADEVAAIKALHKAFPG-VPLRLDPNAAWT 248
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEK 772
+ + ++ ++Y+E+P E + +E+ +P+A + + L
Sbjct: 249 VETSKWVAKELEG-IVEYLEDPAGEIEGMAAVAKEASMPLATNMAVVAFDH------LPP 301
Query: 773 YAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
V ++ GG + +A G + + G+ L+A
Sbjct: 302 SILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSMHSNSHLGISLAAMT 354
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Length = 371
Score = 89.6 bits (223), Expect = 4e-19
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 17/166 (10%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
ID ++ + A + GF AIK+KV R D +D + + +R+ +G L V
Sbjct: 138 AGGIDLELPVADLKTQADRFLAGGFRAIKMKVGR-PDLKEDVDRVSALREHLGDSFPLMV 196
Query: 707 DANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDK 761
DAN WT A+ + DL +IEEP + + ESG +A E T+
Sbjct: 197 DANMKWTVDGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYD 256
Query: 762 FQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
F + G + + +P V IGG+ +A A+ +
Sbjct: 257 FHN----AVRA----GSLTL-PEPDVSNIGGYTTFRKVAALAEANN 293
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily
member, M-xylarate, U function; HET: DXL; 1.30A
{Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Length = 389
Score = 88.9 bits (221), Expect = 7e-19
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 640 RSTSIKI-CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKV 698
+ ++ + I + +P + A VE+GFTA KLKV R P KDA ++ +R++V
Sbjct: 135 HTRGVRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR--APRKDAANLRAMRQRV 192
Query: 699 GHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES-GLPVAL 755
G +E+ VDAN++ +AL ++ + + EEP+ + E + + +A
Sbjct: 193 GADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEPLSIDDIEGHRILRAQGTPVRIAT 252
Query: 756 DE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVV 810
E T + F + + + + ++ GG A I+ A +A
Sbjct: 253 GENLYTRNAFN----DYIRN----DAIDV-LQADASRAGGITEALAISASAASAH-LAWN 302
Query: 811 SAAFESGLGLSA 822
F + ++A
Sbjct: 303 PHTFNDIITVAA 314
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI-2, protein struc initiative; 2.70A
{Polaromonas SP}
Length = 428
Score = 89.3 bits (222), Expect = 9e-19
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 18/176 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
+ +A A + G+ A+KL++ D E ++ VRK +G +++ DAN +T
Sbjct: 184 QPKESLAEEAQEYIARGYKALKLRIGD--AARVDIERVRHVRKVLGDEVDILTDANTAYT 241
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL-PVALDE---TIDKFQKDPL 767
+A ++ + ++EEP + + + + L P+A E T +F
Sbjct: 242 MADARRVLPVLAEIQAGWLEEPFACNDFASYREVAKITPLVPIAAGENHYTRFEFG---- 297
Query: 768 NMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
ML+ G V + S GG IA A + + + + + +GL +A
Sbjct: 298 QMLDA----GAVQVWQPDLSKCGGITEGIRIAAMASAYR-IPINAHSSATGLNHAA 348
>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein
structure initiative, PS nysgrc; 1.85A {Chromohalobacter
salexigens} PDB: 3nfu_A
Length = 450
Score = 89.1 bits (221), Expect = 1e-18
Identities = 59/365 (16%), Positives = 109/365 (29%), Gaps = 54/365 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
KI +M + + + + F R +L L E G+ G GE+ E
Sbjct: 6 KITKMN--VVPVAGEDGFLLNLSGGHEPWFIRC--VLVLEDESGNRGVGEIPSSEGILNG 61
Query: 554 LLDAEEQLRFLLHFMTG---AKISYFLPLLKGSFSSWIWSTLGIPACE--IFPSVRCGLE 608
L + G ++ L +G + G + + V +E
Sbjct: 62 LEKCRSLV-------EGARVNEVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIE 114
Query: 609 MAILNAIAVKH----------------------GSSFLNILYPLTEIDEEISKRSTSIKI 646
A+ + + G FL T++
Sbjct: 115 SALFDLFG-QALGMPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVADPVDAWD 173
Query: 647 CALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELR 705
+P VA++A + GF KLK ++A+ I+ + + L
Sbjct: 174 EVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVL-RGEEEADCIRALHEAFPE-ARLA 231
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALDETI 759
+D N W EA+ IK L Y E+P E E + ++ + +GLP A +
Sbjct: 232 LDPNGAWKLDEAVRVLEPIKH-LLSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIA 290
Query: 760 DKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLG 819
++ ++ V I + + A + G + +
Sbjct: 291 TDYK-QLQYAVQL----NSVDIPLADCHFWTMQGAVAVGELCNEWGMTWGSHSNNHFDIS 345
Query: 820 LSAYI 824
L+
Sbjct: 346 LAMMT 350
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A
{Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Length = 398
Score = 88.1 bits (219), Expect = 1e-18
Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 17/163 (10%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+ +V E G IKLKV + + +D + VR+ +G L VDAN
Sbjct: 170 GFLHTPLDQVLKNVVISRENGIGGIKLKVGQ-PNCAEDIRRLTAVREALGDEFPLMVDAN 228
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ W + A+ G ++ +L +IEEP+ + E + P+A E + + ++
Sbjct: 229 QQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQLAAALDTPIATGEMLTSFREHEQ 288
Query: 765 DPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ ++P +GG I A +HG
Sbjct: 289 ----LILG----NASDF-VQPDAPRVGGISPFLKIMDLAAKHG 322
Score = 29.9 bits (68), Expect = 4.8
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFC--REGFILSLYLEDGSVGYGEVAPLEIHK 551
+I ++ SL + L P + + + R + I + DG G G
Sbjct: 27 RIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGG 86
Query: 552 ENLLDAEEQLRFLL 565
+ + +++ L
Sbjct: 87 QGIYAHAKEIADNL 100
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein
structure initiative (PSI) II, PSI-2, 9382A mandelate
racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Length = 393
Score = 87.7 bits (218), Expect = 2e-18
Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 650 IDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+ ++ A+ +E G IKLKV + D D + VRK +G + L VDAN
Sbjct: 157 GFLHTPIDQLMVNASASIERGIGGIKLKVGQ-PDGALDIARVTAVRKHLGDAVPLMVDAN 215
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQK 764
+ W A + + +L +IEEP+ + E + P+A E + +
Sbjct: 216 QQWDRPTAQRMCRIFEPFNLVWIEEPLDAYDHEGHAALALQFDTPIATGEMLTSAAEHGD 275
Query: 765 DPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ + P +GG IA A+ G
Sbjct: 276 ----LIRH----RAADY-LMPDAPRVGGITPFLKIASLAEHAG 309
>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, isomerase, PSI-2; 2.30A
{Rubrobacter xylanophilus dsm 9941}
Length = 372
Score = 87.3 bits (217), Expect = 2e-18
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 647 CALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRV 706
+ ++ + G +K+KV R +P KD E ++ R+ +G +EL V
Sbjct: 136 GSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGR--EPEKDPERVRAAREAIGESVELMV 193
Query: 707 DANRNWTYQEALEFGF-LIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE 757
DAN +T ++AL + ++ + Y+EEPV ED ++ G+ +A E
Sbjct: 194 DANGAYTRKQALYWAGAFAREAGISYLEEPVS-SEDREGLRLLRDRGPGGVAIAAGE 249
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural
genomics, protein structure initiative, nysgxrc; 1.80A
{Agrobacterium tumefaciens str} PDB: 4dn1_A
Length = 388
Score = 87.0 bits (216), Expect = 3e-18
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWT 713
++ +A + GF A K D A I +R+ +G + ++ D + N T
Sbjct: 163 RTLKARGELAKYWQDRGFNAFKFATPVADD--GPAAEIANLRQVLGPQAKIAADMHWNQT 220
Query: 714 YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLN 768
+ ALE ++ D + E PV + + K + + +P+A+ E T +
Sbjct: 221 PERALELIAEMQPFDPWFAEAPVWTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMR----A 276
Query: 769 MLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVS-AAFESGLGLSAYIIF 826
+E+ +AI ++P + G N I A HG + V+ A +G+ L+A +
Sbjct: 277 RIER----CRIAI-VQPEMGHKGITNFIRIGALAAEHG-IDVIPHATVGAGIFLAASLQA 330
Query: 827 SSYLE 831
SS L
Sbjct: 331 SSTLS 335
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 86.9 bits (216), Expect = 3e-18
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 656 PVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQ 715
+A A + E+GFT +K+KV DP D + VR++V + + +D N W
Sbjct: 153 EDLLAGSARAVEEDGFTRLKIKVGH-DDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLP 211
Query: 716 EALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNML 770
F KD D+ + EEP+ + + + +P+AL E T+D F+ +
Sbjct: 212 TCQRFCAAAKDLDIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFRS----FI 267
Query: 771 EKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+ A VA V + +GG +A A H
Sbjct: 268 DAGA----VAYVQPDVTRLGGITEYIQVADLALAHR 299
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium
binding site, lyase; 1.90A {Shewanella pealeana}
Length = 374
Score = 85.0 bits (211), Expect = 1e-17
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIK-DAEVIQEVRKKVGHRIELRVDANRNW 712
P + +I L ++GF++IK D D +++ VR+ G +E+++D W
Sbjct: 145 DKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKW 204
Query: 713 -TYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDP 766
T + +++ +L +IEEPV + K + +A E T +FQ+
Sbjct: 205 HTCGHSAMMAKRLEEFNLNWIEEPVLADSLISYEKLSRQVSQKIAGGESLTTRYEFQE-- 262
Query: 767 LNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ K I ++P + GG I AQ +G ++ F +G+ L A
Sbjct: 263 --FITK----SNADI-VQPDITRCGGITEMKKIYDIAQMNG-TQLIPHGFSTGILLHA 312
>2qgy_A Enolase from the environmental genome shotgun sequencing of the
sargasso SEA; structural genomics, unknown function,
PSI-2; 1.80A {Environmental sample}
Length = 391
Score = 84.6 bits (210), Expect = 2e-17
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 17/162 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANR 710
D K + + + IK+ + +++VR+ VG + L +D
Sbjct: 145 DLKKDTNDYLRQIEKFYGKKYGGIKIYPML-DSLSISIQFVEKVREIVGDELPLMLDLAV 203
Query: 711 NWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKD 765
+ F + + +IEEPV N + + + V E + F+
Sbjct: 204 PEDLDQTKSFLKEVSSFNPYWIEEPVDGENISLLTEIKNTFNMKVVTGEKQSGLVHFR-- 261
Query: 766 PLNMLEKYAHPGIVAIVIKP--SVIGGFENAGLIARWAQRHG 805
++ + I P S +GG + I+ A +G
Sbjct: 262 --ELISR----NAADI-FNPDISGMGGLIDIIEISNEASNNG 296
>2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure
INI NEW YORK SGX research center for structural
genomics, nysgx; 2.49A {Sinorhizobium meliloti}
Length = 399
Score = 84.7 bits (210), Expect = 2e-17
Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 19/175 (10%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTY 714
+ + A +A +GF++ K D A+ ++ +R+++G + + D + T
Sbjct: 167 TRAKRAELAAAWQAKGFSSFKFASPVADD--GVAKEMEILRERLGPAVRIACDMHWAHTA 224
Query: 715 QEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDPLNM 769
EA+ ++ L + E PV+ + + + + +A+ E T+
Sbjct: 225 SEAVALIKAMEPHGLWFAEAPVRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVP----R 280
Query: 770 LEKYAHPGIVAIVIKPSVI-GGFENAGLIARWAQRHGKMAVVS-AAFESGLGLSA 822
+ + +AI ++P + G I +A H + V+ A +G+ L+A
Sbjct: 281 VAR----RALAI-VQPEMGHKGITQFMRIGAYAHVHH-IKVIPHATIGAGIFLAA 329
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase
superfamily fold, galacturonate dehydratase, D-tartr
galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP}
PDB: 3ops_A* 3n4f_A* 3qpe_A*
Length = 392
Score = 84.4 bits (209), Expect = 2e-17
Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 26/188 (13%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-------KDAEVIQEVRKKVGHRIE 703
D + + A +G K+KV R + +D +++ + + G +
Sbjct: 144 DERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGK 203
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEE--------SGLPVAL 755
+ +DAN + E + D +L ++EE ED Y + + +A
Sbjct: 204 IMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIAD 261
Query: 756 DETIDKFQKDPLNMLEKYAHPGIVAIVIKPSV-IGGFENAGLIARWAQRHGKMAVVSAAF 814
E + + + V + ++ + GF + + HG + +
Sbjct: 262 GEGL--ASPHLIEWATRGR----VDV-LQYDIIWPGFTHWMELGEKLDAHG-LRSAPHCY 313
Query: 815 ESGLGLSA 822
+ G+ A
Sbjct: 314 GNAYGIYA 321
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161,
NYSGXRC, target T1522, structural genomics, PSI; 1.70A
{Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Length = 382
Score = 84.3 bits (209), Expect = 3e-17
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDAN 709
+P + A TLV+ G+ IKL D D + VR+ VG I L +DA
Sbjct: 149 TPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAF 208
Query: 710 RNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDETIDKFQKDPL 767
++ +AL G ++ +IEEP+ + + +PV E+
Sbjct: 209 HWYSRTDALALGRGLEKLGFDWIEEPMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRA 268
Query: 768 NMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
++ G I ++ V +GG A A+ G
Sbjct: 269 EWIKA----GACDI-LRTGVNDVGGITPALKTMHLAEAFG 303
Score = 29.6 bits (67), Expect = 6.0
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP 546
I +E ++R S+ H E +L++ EDG G+ AP
Sbjct: 2 IITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP 54
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, EFI, enzyme function initiative,
metal protein; HET: MSE; 1.50A {Paracoccus
denitrificans} PDB: 3n4e_A*
Length = 393
Score = 82.7 bits (205), Expect = 7e-17
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 23/184 (12%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELR 705
+ V +A + E A+K++ D D + VR+ +G +
Sbjct: 136 AARSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIG 195
Query: 706 VDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TID 760
DAN ++ A+ G ++D + EEPVQ + + + + + V+ E T+
Sbjct: 196 FDANNGYSVGGAIRVGRALEDLGYSWFEEPVQHYHVGAMGEVAQRLDITVSAGEQTYTLQ 255
Query: 761 KFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGL 818
+ +++ +++P + +GG A A HG + V + G+
Sbjct: 256 ALK----DLILSGVR------MVQPDIVKMGGITGMMQCAALAHAHG-VEFVPHQTQPGV 304
Query: 819 GLSA 822
G A
Sbjct: 305 GHFA 308
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, protein structure initiative; HET: GKR;
1.71A {Ralstonia pickettii} PDB: 3nxl_A
Length = 470
Score = 82.3 bits (203), Expect = 2e-16
Identities = 50/371 (13%), Positives = 103/371 (27%), Gaps = 55/371 (14%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
++ M+ + ++ L G G GEV E ++
Sbjct: 9 RVTEMQVIPVAGRDSMLLNLCGAHAPFFTRN----LVILKDNAGRTGVGEVPGGEGIRQA 64
Query: 554 LLDAEEQL--------RFLLHFM------TGAKISYFLPLLKGSFSSWIWSTLGIPACEI 599
L + +L + G S S
Sbjct: 65 LERVIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLR 124
Query: 600 FPSVRCGLEMAILNAIAVKH---------------------GSSFLNILYPLTEIDEEIS 638
+V +E A+L+ + + F T++
Sbjct: 125 MDNVITAVEAALLDLLG-QFLEVPVAELLGAGQQRDSAPMLAYLFYVGDRRKTDLPYLEG 183
Query: 639 KRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARRADPIKDAEVIQEVRKK 697
+ ++ +P +A +A E GF KLK ++ E I K
Sbjct: 184 ANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVM-PGAEEMEAI-AAIKA 241
Query: 698 VGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGL 751
+ +D N W+ EA+ + Y E+P E E + ++ +G+
Sbjct: 242 RFPHARVTLDPNGAWSLNEAIALCKGQGH-LVAYAEDPCGPEAGYSGREVMAEFKRATGI 300
Query: 752 PVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVS 811
P A + ++ + ++ +A V I + + + +A+ G
Sbjct: 301 PTATNMIATDWR-QMGHAVQLHA----VDIPLADPHFWTMQGSVRVAQLCDEWGLTWGSH 355
Query: 812 AAFESGLGLSA 822
+ + L+
Sbjct: 356 SNNHFDVSLAM 366
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 81.0 bits (200), Expect = 5e-16
Identities = 56/330 (16%), Positives = 109/330 (33%), Gaps = 51/330 (15%)
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKGSFSSWI 588
I+ L G+ G GEV E ++ L DA+ + G + + ++ ++
Sbjct: 58 IVILKDNSGNTGVGEVPGGEKIRQTLEDAKPLVI-------GKTLGEYKNVMNTVRQTFN 110
Query: 589 WSTLGIPACEIFP-----SVRCGLEMAILNAIAVKH---------------------GSS 622
G + F V +E A+L+ + + G
Sbjct: 111 DHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLG-QFLGVTVASLLGDGQQRDAVEMLGYL 169
Query: 623 FLNILYPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEE-GFTAIKLKVARR 681
F T + + + + +P V +A E+ GF KLK
Sbjct: 170 FFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVL 229
Query: 682 ADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEED 741
D ++AE + + K+ + +D N W+ EA++ G +K L Y E+P E
Sbjct: 230 -DGFEEAEAVTALAKRFPD-ARITLDPNGAWSLDEAVKIGKQLKG-VLAYAEDPCG-AEQ 285
Query: 742 IIKYCEE-------SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPSVIGGFENA 794
E +GLP A + ++ + + + V I + + +
Sbjct: 286 GYSGREIMAEFRRATGLPTATNMIATDWR-QMGHTISLQS----VDIPLADPHFWTMQGS 340
Query: 795 GLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
+A+ G + + L+ +
Sbjct: 341 IRVAQMCHEWGLTWGSHSNNHFDISLAMFT 370
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW
YORK structura genomics research consortium, TIM barrel;
HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A
3t9p_A 3t8q_A
Length = 388
Score = 79.6 bits (197), Expect = 8e-16
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVA------RRADPIKDAEVIQEVRKKVGHRIELRVD 707
E + +GFTA K++ R P + E+I +R+++G ++L +D
Sbjct: 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLID 205
Query: 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
AN +T A+E G +++D + EEP + + + V E + +
Sbjct: 206 ANSCYTPDRAIEVGHMLQDHGFCHFEEPCPYWELAQTKQVTDALDIDVTGGEQDCDLPTW 265
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
Q M++ V I ++P + +GG + A+ G + V L
Sbjct: 266 Q----RMIDM----RAVDI-VQPDILYLGGICRTLRVVEMARAAG-LPVTPHCANWSLVT 315
Query: 821 SA 822
Sbjct: 316 LF 317
>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase
superfamily fold, D-glucarate dehydratase, D-glucara
isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes}
PDB: 3n6j_A 3n6h_A*
Length = 455
Score = 79.8 bits (197), Expect = 1e-15
Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 14/172 (8%)
Query: 659 VASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEAL 718
+ A + GF KLK + K+ + + E++K + +D N W+ EA+
Sbjct: 190 IELAAASKDRYGFKDFKLKGGVF-EGSKEIDTVIELKKHFPD-ARITLDPNGCWSLDEAI 247
Query: 719 EFGFLIKDCDLQYIEEPVQNE------EDIIKYCEESGLPVALDETIDKFQKDPLNMLEK 772
+ + D L Y E+P E E + ++ +G+P A + ++ + + +
Sbjct: 248 QLCKGLNDV-LTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWR-EMCHAIML 305
Query: 773 YAHPGIVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYI 824
V I + A +A+ G + + L+ +
Sbjct: 306 ----QSVDIPLADPHFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFS 353
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 78.9 bits (195), Expect = 2e-15
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVA-----------RRADPIKDAEVIQEVRKKVGHRIE 703
S A A V G+TA+K A D E +++R VG + +
Sbjct: 146 SADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKAD 205
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---T 758
L + +T A+ G I+ + EEPV N + + +PVA E T
Sbjct: 206 LLFGTHGQFTTAGAIRLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRIPVATGERLTT 265
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +L + G AI+ GG +A A+ +
Sbjct: 266 KAEFA----PVLRE----GAAAILQPALGRAGGIWEMKKVAAMAEVYN 305
>3stp_A Galactonate dehydratase, putative; PSI biology, structural
genomics, NEW YORK structural genomi research
consortium; 1.88A {Labrenzia aggregata iam 12614} PDB:
3sqs_A 3ssz_A
Length = 412
Score = 78.5 bits (194), Expect = 2e-15
Identities = 23/164 (14%), Positives = 62/164 (37%), Gaps = 21/164 (12%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDA 708
S + A ++ G+ A K + ++ + ++ VR+ +G+ +L ++
Sbjct: 178 GSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLEC 237
Query: 709 NRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQ 763
W A + + +++EEPV + + + +P++ E ++
Sbjct: 238 YMGWNLDYAKRMLPKLAPYEPRWLEEPVIADDVAGYAELNAMNIVPISGGEHEFSVIGCA 297
Query: 764 KDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
+ ++ + V++ ++ +GG A I A+
Sbjct: 298 E----LINR----KAVSV-LQYDTNRVGGITAAQKINAIAEAAQ 332
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 78.2 bits (192), Expect = 3e-15
Identities = 58/332 (17%), Positives = 112/332 (33%), Gaps = 47/332 (14%)
Query: 526 EGFILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGAKISYFLPLLKG-SF 584
E + L LE+G+V G+ A + + FL + PLL+G
Sbjct: 51 ECVSVQLILENGAVAVGDCAAV----QYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDV 106
Query: 585 SSW-----IWSTLGIPACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISK 639
++ + L I + +VR GL A+L+A A+ G ++ E
Sbjct: 107 DAFLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTEVV--CDEWQLPCVP 164
Query: 640 RSTSIKICALIDSNKSPVEVASI--ATTLVEEGFTAIKLKVARRADPIKD-----AEVIQ 692
+ + D V+ + L ++ K+ + + +++ ++ I
Sbjct: 165 EAIPL-FGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRIL 223
Query: 693 EVRKKVGHRIELRVDANR------NWTYQEALEFGFLIKDCDLQY---IEEPV--QNEED 741
+R + L +D + E+ ++ IE PV N+ D
Sbjct: 224 SLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPD 283
Query: 742 IIKYCEE---------SGLPVALDETIDKFQKDPLNMLE-KYAHPGIVAIVIKPSVIGGF 791
I+ SG+ + DE + +Q D ++ + H + IK +GG
Sbjct: 284 QIRMLTAITKELTRLGSGVKIVADEWCNTYQ-DIVDFTDAGSCH----MVQIKTPDLGGI 338
Query: 792 ENAGLIARWAQRHGKMAVVSAA-FESGLGLSA 822
N + +HG A E+ +
Sbjct: 339 HNIVDAVLYCNKHGMEAYQGGTCNETEISART 370
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 78.1 bits (193), Expect = 3e-15
Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-------KDAEVIQEVRKKVGHRIELRVD 707
P +V + L GF KL I + E+R G+ +E +D
Sbjct: 125 RPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLD 184
Query: 708 ANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
+ + A ++ +IEEPV E + + LP+A E + F
Sbjct: 185 FHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGERMFSRFDF 244
Query: 763 QKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLS 821
+ +LE G V+I+ S GG IA A+ + +A+ + L+
Sbjct: 245 K----RVLEA----GGVSILQPDLSHAGGITECVKIAAMAEAYD-VALAPHCPLGPIALA 295
Query: 822 A 822
A
Sbjct: 296 A 296
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC,
muconate lactonizing EN structural genomics, protein
structure initiative; 2.10A {Shewanella pealeana}
Length = 394
Score = 76.2 bits (188), Expect = 1e-14
Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 20/182 (10%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVAR--RADPIKDAEVIQEVRKKVGHRIELRVDA 708
++ + E G A+K+ + + + ++E+R+ +G +++ VD
Sbjct: 148 TLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDC 207
Query: 709 NRNWT-YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKF 762
WT +Q+A ++D DL +IE +Q + K + E T +
Sbjct: 208 LYRWTDWQKARWTFRQLEDIDLYFIEACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFEA 267
Query: 763 QKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGL 820
Q+ LEK +++ ++ GG I + H ++ +++G+
Sbjct: 268 QE----WLEK----TGISV-VQSDYNRCGGVTELLRIMDICEHHN-AQLMPHNWKTGITA 317
Query: 821 SA 822
+A
Sbjct: 318 AA 319
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 76.2 bits (188), Expect = 1e-14
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-----------KDAEVIQEVRKKVGHRIE 703
P A A V+ GFTA+K A + + VR+ VG + +
Sbjct: 144 DPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKAD 203
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---T 758
L + A+ ++ D + EEPV EE I + + + +P+A E T
Sbjct: 204 LLFGTHGQMVPSSAIRLAKRLEKYDPLWFEEPVPPGQEEAIAQVAKHTSIPIATGERLTT 263
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +L+ G +I+ + + +GG A IA A+ H
Sbjct: 264 KYEFH----KLLQA----GGASILQLNVARVGGLLEAKKIATLAEVHY 303
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Length = 410
Score = 75.4 bits (186), Expect = 2e-14
Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 631 TEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----- 685
T + S S + D + +A +LV EG+ A+K+ I
Sbjct: 132 TSLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHI 191
Query: 686 ------KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--- 736
E +++R VG RIE+ + + W A + D + ++E+P+
Sbjct: 192 SLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVEDPIAKM 251
Query: 737 QNEEDIIKYCEESGLPVALDETI 759
N + ++ P+ E +
Sbjct: 252 DNIPAVADLRRQTRAPICGGENL 274
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain
protein; aldolase, structural genomics, biology; 2.90A
{Labrenzia alexandrii}
Length = 404
Score = 74.6 bits (184), Expect = 4e-14
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 25/168 (14%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI-----------KDAEVIQEVRKKVGHRIE 703
A A V++GFTA+K A + +++R VG + +
Sbjct: 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKAD 210
Query: 704 LRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYCEESGLPVALDE---T 758
L + +T A ++ D + EEP+ + ED+ + + +PVA E T
Sbjct: 211 LLFGTHGQFTVSGAKRLARRLEAYDPLWFEEPIPPEKPEDMAEVARYTSIPVATGERLCT 270
Query: 759 IDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHG 805
+F +LE G +I+ + +GG A IA A+ H
Sbjct: 271 KYEFS----RVLET----GAASILQMNLGRVGGLLEAKKIAAMAECHS 310
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 74.6 bits (184), Expect = 4e-14
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 19/128 (14%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-----------------KDAEVIQE 693
D P + A A T V EG+ AIK+ + +
Sbjct: 148 DMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAA 207
Query: 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL 751
+R VG +++ + + A++FG +I++ + Y EEPV N + + ++ +
Sbjct: 208 IRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNI 267
Query: 752 PVALDETI 759
P+A E I
Sbjct: 268 PLAAGERI 275
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 74.2 bits (183), Expect = 5e-14
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 17/126 (13%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI---------------KDAEVIQEVR 695
S E ++A VE GF AIKL V P+ + VR
Sbjct: 145 FEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVR 204
Query: 696 KKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPV 753
+ VG +E+ +D + + ++ F ++ L ++EEP N + + + + P+
Sbjct: 205 EAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLEEPTPPENLDALAEVRRSTSTPI 264
Query: 754 ALDETI 759
E +
Sbjct: 265 CAGENV 270
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics,
isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB:
2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Length = 409
Score = 72.3 bits (178), Expect = 2e-13
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 24/133 (18%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI------------------------K 686
V A E F AIK + D
Sbjct: 139 PPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRN 198
Query: 687 DAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYC 746
++ +R G +E+ +D N N + L+ + D DL ++E + + +
Sbjct: 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYVR 258
Query: 747 EESGLPVALDETI 759
S P++ ET+
Sbjct: 259 NHSPHPISSCETL 271
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 71.1 bits (175), Expect = 5e-13
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-----------------KDAEVIQE 693
S E A A V EG+ A+K+ V E ++
Sbjct: 142 KSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEA 201
Query: 694 VRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGL 751
+R VG +++ V+ + + A++F I++ ++ + EE N + + ++ +
Sbjct: 202 IRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYEEINTPLNPRLLKEAKKKIDI 261
Query: 752 PVALDETI 759
P+A E I
Sbjct: 262 PLASGERI 269
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2;
HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB:
2oz3_A*
Length = 404
Score = 70.8 bits (174), Expect = 6e-13
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 25/158 (15%)
Query: 663 ATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
+ GF K+ + K+ E + +R++VG L D + A
Sbjct: 167 PDLAQKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYA 226
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE---TIDKFQKDPLNM 769
++ L++IEE + +D ++ +G+ V E T F+ +
Sbjct: 227 TRLARGAREYGLKWIEEALP-PDDYWGYAELRRNAPTGMMVTTGEHEATRWGFRM----L 281
Query: 770 LEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
LE G I I+P V GG I+ A H
Sbjct: 282 LEM----GCCDI-IQPDVGWCGGVTELLKISALADAHN 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.8 bits (175), Expect = 7e-13
Identities = 91/630 (14%), Positives = 178/630 (28%), Gaps = 180/630 (28%)
Query: 127 RKLLASFLETEQNILFLDHLDHALLSESVKDWI---QFDVIIQIGSRITSKRISQMIEEC 183
+ +L+ F + F+D+ D + + K + + D II ++
Sbjct: 19 KDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---------- 63
Query: 184 FPCTYILVDNHPCRHDPSHSVTHRIQSTIVQ-FVDFLLKVQVPHRSSKWCSFLRALDMMV 242
T L Q +VQ FV+ +L++ S + R MM
Sbjct: 64 ---TLRLFW-----------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 243 ASEISF--------QICADYSLTEPHVAHELSRALT---SNSALFV-GNSMAIRDLDM-- 288
I Q+ A Y+++ +L +AL + + G +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLG 160
Query: 289 YGRNWTTCTHTVADIMLNSEFPHQ--WIRVAGNRGASGIDGLLSTAIGFAVGCNKHVLCV 346
G+ W + + + W+ + N + + + + + N
Sbjct: 161 SGKTWVA-LDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPN---WTS 215
Query: 347 VGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYF---- 402
D S + ++ ++R +L + LL + + + + F
Sbjct: 216 RSDHSSNIKLR-IHSIQAELRR--LLKSKPYEN-----CLLVLLNVQNAKAWN-AFNLSC 266
Query: 403 ---YTTHNISIQNLCLAHGLNHVQVK------TKVELEE--------------------- 432
TT + + A H+ + T E++
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 433 --ALSM--------------SQHLGTDRVIEV-ESCIDA--NATFHSMLRKFA--RQSAD 471
LS+ +H+ D++ + ES ++ A + M + + SA
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 472 HTLNVLS------QFSVPDTISC-----SLSICKICRMEYSLYRIQL--CAPPTSSY--- 515
+LS S + SL + S+ I L + Y
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 516 ---IDHNRSRFCREGFILSLYLEDG----SVGYGEVAPLEIHKENLLDAEE--QLR--FL 564
+DH + L D +G+ H +N+ E R FL
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--------HLKNIEHPERMTLFRMVFL 498
Query: 565 -LHFMTGAKISYFLPLLKGSFSSWIWSTLG---------IPACEIFPSVRCGLEMAILNA 614
F+ KI + S S I +TL + + + +
Sbjct: 499 DFRFL-EQKIRHDSTAWNASGS--ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 615 IAVKHGSSFLNIL-----YPLTEIDEEISK 639
S + ++L I EE K
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 63.7 bits (154), Expect = 3e-10
Identities = 61/457 (13%), Positives = 134/457 (29%), Gaps = 132/457 (28%)
Query: 2 ILTTLDSAVHWAT----SSPYGPV--------HINCPFREPLDNS-----PKHWMSSCLK 44
+ +D + W +SP + I+ + D+S H + + L+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 45 GL--------------DIWTSS-IEPF---------TKYIQV---------QH---SHAC 68
L ++ + F T++ QV H H
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 69 KSYTYCQMAEVLELVQGVN---------KGLLLVGAVHNEDEIWAVL--HLARHIRWP-V 116
+ T ++ +L ++ I + LA W V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----IAESIRDGLATWDNWKHV 350
Query: 117 VADILSGLRLRKLLASFLE----TEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRIT 172
D +L ++ S L E +F L ++ S I ++ I +
Sbjct: 351 NCD-----KLTTIIESSLNVLEPAEYRKMFDR-L--SVFPPSAH--IPTILLSLIWFDVI 400
Query: 173 SKRISQMIEECFPCTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVP-----HR 227
+ ++ + Y LV+ P T I S + LKV++ HR
Sbjct: 401 KSDVMVVVNKL--HKYSLVEKQPKES------TISIPS-----IYLELKVKLENEYALHR 447
Query: 228 S--SKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRA-LTSNSALFVGNSMAIR 284
S + + + D + ++ Y + H+ H L LF M
Sbjct: 448 SIVDHY-NIPKTFD---SDDLIPPYLDQYFYS--HIGHHLKNIEHPERMTLF---RMVFL 498
Query: 285 DLD-------MYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAV 337
D W + ++ + + +F +I + + L++ + F
Sbjct: 499 DFRFLEQKIRHDSTAW-NASGSILNTLQQLKFYKPYICDNDPK----YERLVNAILDFLP 553
Query: 338 GCNKHVL-----CVVGDISFLHDTNGLAILKQRMKRK 369
++++ ++ I+ + + + + ++
Sbjct: 554 KIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQR 589
Score = 57.6 bits (138), Expect = 2e-08
Identities = 82/604 (13%), Positives = 161/604 (26%), Gaps = 205/604 (33%)
Query: 423 QVKTKVELEEALSMSQHL-GTDRVIE-------------VESCIDANATFHSMLRKFARQ 468
+ +K E++ + + GT R+ VE + N F ++ +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTE 101
Query: 469 SADHTLNVLSQFSVPDTISCSLSICKICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGF 528
++ Y R +L + +N SR
Sbjct: 102 QRQPSMM---------------------TRMYIEQRDRLYNDN-QVFAKYNVSR---LQP 136
Query: 529 ILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLRFLLHFMTGA-KISYFLPL-------L 580
L L ++ LL+ L+ + G+ K + L +
Sbjct: 137 YLKL------------------RQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKV 176
Query: 581 KGSFSSWI-WSTLGIPACEIFPSVRC---GLEMAILNAIAVKHGSSFL-------NILYP 629
+ I W L C + +L + + ++ NI
Sbjct: 177 QCKMDFKIFWLNLK----------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 630 LTEIDEEISK--RSTSIKICALI-D--SNKSPVEVASI-ATTLVEEGFTAIKLKVARRAD 683
+ I E+ + +S + C L+ N ++ L+ T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TT---------- 272
Query: 684 PIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIK--DCDLQYIEEPVQNEED 741
+ +V + I L + T E L+K DC Q + P +
Sbjct: 273 --RFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKS--LLLKYLDCRPQ--DLPRE---- 321
Query: 742 IIKYCEESGLPVALDETIDKFQKDPLNMLEKYAHPGI--VAIVIKPSVIGGFENAGLIAR 799
+ P L I + +D L + + H + +I+ S+
Sbjct: 322 -----VLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSL------------ 363
Query: 800 WAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYL-CKVMNRELCPPVAQGLGTYQW 858
E E + + V P L W
Sbjct: 364 ------------NVLEPA-------------EYRKMFDRLSVFPPSAHIP-TILLSLI-W 396
Query: 859 LKEDVTTDPISI---CHNSCRGFVEASVAKATHILQNLQINNDVICK----TSMEEQVL- 910
+ + +D + + H VE ++T + ++ + ++ K ++ ++
Sbjct: 397 F-DVIKSDVMVVVNKLHK--YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVD 451
Query: 911 RYQ---------LNVNSKD--FCSFI----KVQEIGQRIDIQDNILLFLHGFLG-----T 950
Y L D F S I K E +R+ + + L FL
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHD 510
Query: 951 GEEW 954
W
Sbjct: 511 STAW 514
Score = 42.5 bits (99), Expect = 7e-04
Identities = 37/223 (16%), Positives = 71/223 (31%), Gaps = 74/223 (33%)
Query: 739 EEDIIKYCEESGLPVALDETIDKFQ-KDPLNML------EKYAHPGIVAIVIKPSVIGGF 791
E +Y + L V D +D F KD +M E+ H I++ + G
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-----IIMSKDAVSG- 63
Query: 792 ENAGLIARWAQRHGKMAVVSAAFESGLGLSAYIIFSSYLELQNAYLCKVMNRELCPPVAQ 851
+F + L Q + K + L
Sbjct: 64 ------------------------------TLRLFWTLLSKQEEMVQKFVEEVLRI---- 89
Query: 852 GLGTYQWLKEDVTTDPISICHNSCRGFVEASVAKATHILQNLQINNDVICKTSMEEQVLR 911
Y++L + T+ + S+ +I Q ++ ND QV
Sbjct: 90 ---NYKFLMSPIKTEQR-----------QPSMMTRMYIEQRDRLYNDN--------QVFA 127
Query: 912 YQLNVNSKDFCSFIKVQEIGQRIDIQDNILLFLHGFLGTGEEW 954
+ NV+ ++K+++ + + + + G LG+G+ W
Sbjct: 128 -KYNVSRLQ--PYLKLRQALLEL--RPAKNVLIDGVLGSGKTW 165
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI,
protein structure initiat YORK structural genomics
research consortium; 1.80A {Salmonella typhimurium LT2}
PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Length = 415
Score = 70.5 bits (173), Expect = 9e-13
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 26/154 (16%)
Query: 667 VEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFG 721
E GF K+ A KDA ++ ++R+K G L +D + A +
Sbjct: 183 KEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLA 242
Query: 722 FLIKDCDLQYIEEPVQNEEDI-----IKYCEESGLPVALDE---TIDKFQKDPLNMLEKY 773
+L++IEE + + +K +G+ V E T+ F+ + E
Sbjct: 243 HACAPFNLKWIEECLP-PQQYEGYRELKRNAPAGMMVTSGEHHGTLQSFRT----LAETG 297
Query: 774 AHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
+++P V GG IA A+ G
Sbjct: 298 ID------IMQPDVGWCGGLTTLVEIAALAKSRG 325
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 70.5 bits (173), Expect = 1e-12
Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 24/157 (15%)
Query: 663 ATTLVEEGFTAIKLKVAR-----RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEA 717
T GF K+ + K+ E +++ R+ VG + VD +
Sbjct: 173 PTAAKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYT 232
Query: 718 LEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESGLPVALDE---TIDKFQKDPLNML 770
+E D ++ + EE + +D + + E + F+K ++
Sbjct: 233 IELVKACLDLNINWWEECLS-PDDTDGFALIKRAHPTVKFTTGEHEYSRYGFRK----LV 287
Query: 771 EKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
E + I I+P V +GG +A A +
Sbjct: 288 EG----RNLDI-IQPDVMWLGGLTELLKVAALAAAYD 319
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 70.0 bits (172), Expect = 1e-12
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 651 DSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------KDA 688
+P E A A +++G+ AIK+
Sbjct: 146 HILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGE 205
Query: 689 EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEEDIIKYC 746
I +R+ +G ++ V+ + A++F I+ + EEP+ N +++ K
Sbjct: 206 ARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVS 265
Query: 747 EESGLPVALDETI 759
+ +P+A E
Sbjct: 266 RSTTIPIATGERS 278
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 69.9 bits (172), Expect = 1e-12
Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 32/180 (17%)
Query: 649 LIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------KDAEVIQ 692
+ +P E A ++EG+ A+K + ++
Sbjct: 131 WYGAADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVK 190
Query: 693 EVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESG 750
VR G IEL VD + T E + F I + D+ ++EEP + + E+
Sbjct: 191 AVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVEEPCDPFDNGALKVISEQIP 250
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHG 805
LP+A+ E T F+ + E I I+P + GG I A+ +
Sbjct: 251 LPIAVGERVYTRFGFR----KIFEL----QACGI-IQPDIGTAGGLMETKKICAMAEAYN 301
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 68.8 bits (169), Expect = 2e-12
Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 14/146 (9%)
Query: 628 YPLTEIDEEISKRSTSIKICALIDSNKSPVEVASIATTLVEEGFTAIKLKVARRADPI-- 685
+ + + + D N +A +L+E+G TA+K+ A
Sbjct: 125 EYIKKATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTR 184
Query: 686 ----------KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEP 735
E +++RK VG ++++ V+ + W A++ + + E+P
Sbjct: 185 GQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHEDP 244
Query: 736 V--QNEEDIIKYCEESGLPVALDETI 759
+ + + +Y S P++ ET+
Sbjct: 245 IKMDSLSSLTRYAAVSPAPISASETL 270
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 68.8 bits (169), Expect = 3e-12
Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 38/181 (20%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVA----------------------RRADPIKDAEVI 691
++ + + L+ +G+ I+ ++ ++ E+
Sbjct: 153 ETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMF 212
Query: 692 QEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES 749
+R+K G ++ + D + Q+A++ ++ +IE+ + + + ++S
Sbjct: 213 HALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIEDILPPQQSAWLEQVRQQS 272
Query: 750 GLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKP--SVIGGFENAGLIARWAQRH 804
+P+AL E ++ +++ + I+ S IGG A +A Q
Sbjct: 273 CVPLALGELFNNPAEWH----DLIVN----RRIDF-IRCHVSQIGGITPALKLAHLCQAF 323
Query: 805 G 805
G
Sbjct: 324 G 324
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 68.1 bits (167), Expect = 5e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 20/178 (11%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKV--ARRADPIKDAEVIQEVRKKVGHRIELRVDANRNW 712
+ A + A+K+ V + A ++E+R +GH ++ VD +
Sbjct: 157 AIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRF 216
Query: 713 T-YQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEESGLPVALDE---TIDKFQKDP 766
T + E I+D +L + E +Q + K E + + E T + ++
Sbjct: 217 TDWYEVARLLNSIEDLELYFAEATLQHDDLSGHAKLVENTRSRICGAEMSTTRFEAEE-- 274
Query: 767 LNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSA 822
+ K G V + ++ GG I A + + V+ +++G+ +A
Sbjct: 275 --WITK----GKVHL-LQSDYNRCGGLTELRRITEMATANN-VQVMPHNWKTGITSAA 324
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 66.9 bits (164), Expect = 1e-11
Identities = 23/181 (12%), Positives = 62/181 (34%), Gaps = 38/181 (20%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------KDAEVI 691
+ + + +E+G+ I+ ++ +
Sbjct: 132 DTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMF 191
Query: 692 QEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQ--NEEDIIKYCEES 749
+ +R+K G++ + D + +A++F ++ +IE+ + E + +S
Sbjct: 192 KSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQS 251
Query: 750 GLPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIVIKPSV--IGGFENAGLIARWAQRH 804
+ + L E ++++ +++ + I+ V IGG A + Q
Sbjct: 252 SVSLGLGELFNNPEEWK----SLIAN----RRIDF-IRCHVSQIGGITPALKLGHLCQNF 302
Query: 805 G 805
G
Sbjct: 303 G 303
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 62.7 bits (153), Expect = 1e-10
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+FLHGFL + ++ + + I+IDLPGHG
Sbjct: 19 LVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGED 56
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 63.1 bits (154), Expect = 2e-10
Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 50/213 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVAR--------------------------------- 680
VEV A +EEG+ I+ ++
Sbjct: 154 ADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAP 213
Query: 681 ------RADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEE 734
A + +R K+G +EL DA+ T A+ ++ L ++E+
Sbjct: 214 GIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLED 273
Query: 735 PV--QNEEDIIKYCEESGLPVALDETI-DKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGG 790
PV +N E + ++S P+A+ E + + PL ++ ++ + S IGG
Sbjct: 274 PVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPL--IDN----KLIDYIRCHISSIGG 327
Query: 791 FENAGLIARWAQRHG-KMAVVSAAFESGLGLSA 822
A IA +++ +G + A S S +G+ A
Sbjct: 328 ITPAKKIAIYSELNGVRTAWHSPGDISPIGVCA 360
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 62.6 bits (153), Expect = 3e-10
Identities = 24/139 (17%), Positives = 44/139 (31%), Gaps = 33/139 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPIKD-------------------------- 687
K ++G+ AI+++
Sbjct: 148 KDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEK 207
Query: 688 -----AEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEE 740
+V VRK+ G I L D + T EA G ++ L ++E+ V +N+E
Sbjct: 208 YLNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAVPAENQE 267
Query: 741 DIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 268 SFKLIRQHTTTPLAVGEVF 286
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 60.4 bits (147), Expect = 4e-10
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
++ +HG LG+G +W P++ ++ + +++DLPGHG +
Sbjct: 19 VVLVHGLLGSGADWQPVLSHLARTQCAALTLDLPGHGTN 57
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 61.5 bits (150), Expect = 5e-10
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 33/138 (23%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPI----------------------------- 685
E ++ G+ AI+ +
Sbjct: 143 DIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKA 202
Query: 686 --KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEED 741
++ +E+RK G L D + +T QEA G +++ L ++E+ +N+E
Sbjct: 203 LNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLEDCTPAENQEA 262
Query: 742 IIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 263 FRLVRQHTVTPLAVGEIF 280
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 60.7 bits (148), Expect = 1e-09
Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 33/139 (23%)
Query: 654 KSPVEVASIATTLVEEGFTAIKLKVARRADPI---------------------------- 685
++ + + A G+ AI+L+
Sbjct: 149 ETIEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAK 208
Query: 686 ---KDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNEE 740
++ + R+ +G + L D + T EA G ++ L ++E+ V +N+
Sbjct: 209 YLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLEDSVPAENQA 268
Query: 741 DIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 269 GFRLIRQHTTTPLAVGEIF 287
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 60.3 bits (147), Expect = 1e-09
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 35/140 (25%)
Query: 655 SPVEVASIATTLVEEGFTAIKLKVA---------------RRADPIKDA----------- 688
S EV ++GF AI+++ +P
Sbjct: 149 SIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTE 208
Query: 689 -------EVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPV--QNE 739
++ + VR K G L D + T EA FG ++D L ++E+P +N+
Sbjct: 209 KYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPTPAENQ 268
Query: 740 EDIIKYCEESGLPVALDETI 759
+ + P+A+ E
Sbjct: 269 ACFRLIRQHTVTPIAVGEVF 288
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr
unknown function; HET: EHM; 1.70A {Xanthomonas
campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Length = 441
Score = 59.2 bits (143), Expect = 3e-09
Identities = 66/391 (16%), Positives = 128/391 (32%), Gaps = 69/391 (17%)
Query: 494 KICRMEYSLYRIQLCAPPTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAPLEIHKEN 553
I +E R S + + +L + GYG V + +
Sbjct: 3 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGNDV 62
Query: 554 LLDAEEQLRFLLHFMTGAKI-----SYFLPLLKGSFSSWIWSTLGIPACEIFPSVRCGLE 608
A L + ++ K+ ++ L S W+ G+ I +
Sbjct: 63 QTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAI-----GAVI 117
Query: 609 MAILNAIAVKHGSSFLNIL--------------YPLT-----EIDEEISKRSTSIK---I 646
A + A + L+ + I + + +
Sbjct: 118 NAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAART 177
Query: 647 CALIDS------------NKSPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEV 694
LI+ S ++ +A V +GF IKLKV A+ D +
Sbjct: 178 ATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKV--GANVQDDIRRCRLA 235
Query: 695 RKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCE----ESG 750
R +G I + VDAN+ W A+++ + + D+ +IEEP + +D++ + +
Sbjct: 236 RAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIEEPT-SPDDVLGHAAIRQGITP 294
Query: 751 LPVALDE---TIDKFQKDPLNMLEKYAHPGIVAIV-IKPSVIGGFENAGLIARWAQRHGK 806
+PV+ E F+ +L+ A V ++ I + +GG I A + G
Sbjct: 295 VPVSTGEHTQNRVVFK----QLLQAGA----VDLIQIDAARVGGVNENLAILLLAAKFGV 346
Query: 807 ------MAVVSAAFESGLGLSAYIIFSSYLE 831
V L ++ ++ + +E
Sbjct: 347 RVFPHAGGVGLCELVQHLAMADFVAITGKME 377
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo
sapiens}
Length = 441
Score = 58.3 bits (141), Expect = 6e-09
Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 25/180 (13%)
Query: 667 VEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKD 726
+++G+T K+KV D D Q +R +G L +DAN+ W EA+E+ +
Sbjct: 213 LKDGWTRFKVKVGA--DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAK 270
Query: 727 CDLQYIEEPVQNE-----EDIIKYCEESGLPVALDE---TIDKFQKDPLNMLEKYAHPGI 778
+IEEP + I K G+ +A E F+ +L+
Sbjct: 271 FKPLWIEEPTSPDDILGHATISKALVPLGIGIATGEQCHNRVIFK----QLLQA----KA 322
Query: 779 VAIV-IKPSVIGGFENAGLIARWAQRHGKM------AVVSAAFESGLGLSAYIIFSSYLE 831
+ + I +G + A++ V L + YI S+ LE
Sbjct: 323 LQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHAGGVGLCELVQHLIIFDYISVSASLE 382
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 6e-08
Identities = 66/448 (14%), Positives = 135/448 (30%), Gaps = 147/448 (32%)
Query: 6 LDSAVHWATSSPYGPVHINCPFREPLDNSPKHWMSSCLKGLDI--WTSSIEPFTKYIQVQ 63
+ S V + + V L+ + + L+G DI + + V+
Sbjct: 68 VSSLVEPSKVGQFDQV---------LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 64 HSHACKSYTYCQMAEVLE-----------LVQGVNKGLLLVGAV-----HNED------E 101
K+Y A ++ L + V +G + A+ + +D +
Sbjct: 119 TKELIKNY-I--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 102 IWAVLHLARHIRWPVVADIL--SGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWI 159
++ H +V D++ S L +L+ + L+ E+ +F L+ + +W+
Sbjct: 176 LYQTYH-------VLVGDLIKFSAETLSELIRTTLDAEK--VFTQGLN-------ILEWL 219
Query: 160 QFDVIIQIGSRITSKRISQMIEECFP-------CTYILVDNHPCR---HDPSHSVTHRIQ 209
+ + S IS P Y++ + P + ++
Sbjct: 220 ENPSNTPDKDYLLSIPIS------CPLIGVIQLAHYVVT----AKLLGFTPGE-LRSYLK 268
Query: 210 STIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRAL 269
L+ + W SF ++ + + F I P+ + L ++
Sbjct: 269 GATGHSQG-LVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTS--LPPSI 323
Query: 270 TSNSALFVGN----SM-AIRDLDMYGRNWTTCTHTVADIM--LNSEFP-HQWIRVAGNRG 321
+S L M +I +L V D + NS P + + ++
Sbjct: 324 LEDS-LENNEGVPSPMLSISNLTQ---------EQVQDYVNKTNSHLPAGKQVEIS---- 369
Query: 322 ASGIDGLLSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILKQRMK-------------- 367
L++ A V+ G L+ GL + ++ K
Sbjct: 370 ------LVNGA-------KNLVVS--GPPQSLY---GLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 368 RKPILMLVINNHGGAIFSLLPIADRTEP 395
RK F LP+ P
Sbjct: 412 RKLK--------FSNRF--LPV---ASP 426
Score = 52.4 bits (125), Expect = 7e-07
Identities = 71/394 (18%), Positives = 111/394 (28%), Gaps = 164/394 (41%)
Query: 29 EPLDNSPKHWMSSCLKGLDI--W--TSSIEPFTKY----------IQV-QHSHACKSYTY 73
L + +GL+I W S P Y I V Q +H Y
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH------Y 249
Query: 74 CQMAEVLELVQGVNKGLL---LVGA-VHNEDEIWAVLHLARHIRWPVVADILSGLRLRKL 129
A++L G G L L GA H++ + AV +A+ S
Sbjct: 250 VVTAKLL----GFTPGELRSYLKGATGHSQGLVTAV----------AIAETDSWESFFVS 295
Query: 130 LASFLETEQNILFLDHLDHALLSESVKDWIQFDVIIQIGSRITSKRISQMIEECFPCTY- 188
+ + +LF +I G R E +P T
Sbjct: 296 VRKAIT----VLF---------------FI--------GVR------CY---EAYPNTSL 319
Query: 189 ---ILVDNHPCRHD-PSH--SVTH----RIQSTIVQFVDFL---LKVQV----------- 224
IL D+ PS S+++ ++Q + + L +V++
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 225 --PHRSSKWCSFLRALDMMV----ASEISFQICADYS------------LTEP-H----- 260
P +S L L++ + A Q +S + P H
Sbjct: 380 SGPPQS------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 261 -VAHELSRALTSNSALFVGNSMAI--------RDL------------DMYGR---NWTTC 296
+ +++ L N+ F + I DL D R W T
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 297 THTVADIMLNSEFPHQWIRVAGNRGASGIDGLLS 330
T A I G GASG+ L
Sbjct: 494 TQFKA----------THILDFGPGGASGLGVLTH 517
Score = 52.0 bits (124), Expect = 1e-06
Identities = 98/594 (16%), Positives = 169/594 (28%), Gaps = 177/594 (29%)
Query: 374 LVINNHGGAIFSLL-PIADRTEPRILDQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEE 432
L ++ HG LL P A L + F + + T EL
Sbjct: 9 LTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-----EPTTPAEL-- 60
Query: 433 ALSMSQHLG-TDRVIEVESCIDANATFHSMLRKFAR---QSAD-HTLNVLSQFSVPDTIS 487
+ + LG ++E + + L +F + D H L T+
Sbjct: 61 ---VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 488 CSLSICKICRMEYSLYRIQLCAP-PTSSYIDHNRSRFCREGFILSLYLEDGSVGYGEVAP 546
+ + K Y ++ A P + R EG L G G G
Sbjct: 118 KTKELIKN----Y--ITARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIFG--GQGNTDD 168
Query: 547 ----L-EIHK------ENLLD-AEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGI 594
L ++++ +L+ + E L L+ A+ + L + W+ +
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNT 225
Query: 595 PACEIFPSVRCGLEMAILNAIAVKHGSSFLNILYPLTEIDEEISKRSTSIKICALIDSNK 654
P + L +I + S PL I + L
Sbjct: 226 PDKDY------------LLSIPI----SC-----PL-------------IGVIQL----- 246
Query: 655 SPVEVASIATTLVEEGFTAIKLKVARRADPIKDAEVIQEVRKKVGHRIELRVDA-----N 709
A T GFT P E+ ++ GH L V A
Sbjct: 247 -----AHYVVTAKLLGFT-----------P---GELRSYLKGATGHSQGL-VTAVAIAET 286
Query: 710 RNW-----TYQEALEFGFLI-KDCDLQYIEEPVQN-EEDIIKYCEE------------SG 750
+W + ++A+ F I C Y P + I++ E S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAY---PNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 751 LP-VALDETIDKFQKDPLNMLEKYAHPGIVAIVIKPS--VIGGFENA--GLIAR------ 799
L + + ++K L I ++V V+ G + GL
Sbjct: 344 LTQEQVQDYVNKTNSH----LPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 800 ----------WAQRHGKMAVVSAAFESGLGLSA-YIIFSSYLELQNAYLCKVMNRELCPP 848
+++R S F L +++ + S L + + K + +
Sbjct: 399 PSGLDQSRIPFSERK---LKFSNRF---LPVASPF--HSHLLVPASDLINKDLVKNNVSF 450
Query: 849 VAQGLG-----TYQWLKEDVTTDPISICHNSCRGFVEASV-------AKATHIL 890
A+ + T+ D+ SI + V KATHIL
Sbjct: 451 NAKDIQIPVYDTFDG--SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 42.0 bits (98), Expect = 0.001
Identities = 54/293 (18%), Positives = 90/293 (30%), Gaps = 101/293 (34%)
Query: 677 KVAR----RADPIKDAEVIQEVRKKVGHRIELRVDAN-RNWTYQEALEFGFLIKD----- 726
K A+ RAD + G I V N N T E G I++
Sbjct: 1640 KAAQDVWNRAD--------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 727 -----CDLQYIEEPVQNE--EDIIKYCEES--GLPVALDETIDKFQKDPLNMLEKYAHPG 777
D + E + E E Y S GL L T ++ P
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---LSAT-------------QFTQPA 1735
Query: 778 IVAIVIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESG--LG-LSAYIIFSSYLELQN 834
+ + + ++ GLI A F +G LG +A + + +++
Sbjct: 1736 LTLMEK--AAFEDLKSKGLI-----------PADATF-AGHSLGEYAALASLADVMSIES 1781
Query: 835 A-YLCKVMNR-----ELCPPVAQGLGTY-------------------QWLKEDV---TTD 866
+ V R P G Y Q++ E V T
Sbjct: 1782 LVEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 867 PISIC-HNS------CRGFVEASVAKATHILQNLQINN-DVI-CKTSME-EQV 909
+ I +N G + A + T++L +++ D+I + S+ E+V
Sbjct: 1840 LVEIVNYNVENQQYVAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 31.9 bits (72), Expect = 1.2
Identities = 41/325 (12%), Positives = 94/325 (28%), Gaps = 117/325 (36%)
Query: 399 DQYFYTTHNISIQNLCLAHGLNHVQVKTKVELEEALSMSQHLGTDR---------VIEVE 449
D +F T+ SI ++ V +++ H G ++ + E
Sbjct: 1650 DNHFKDTYGFSILDI--------VINNPV-------NLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 450 SCIDANATFHSMLRKFARQSADHTLN----VLS--QFSVPDTISCSLSICKICRMEYSLY 503
+ +D + ++ S +T +LS QF+ P + ME + +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP----------ALTLMEKAAF 1744
Query: 504 RI---QLCAPPTSSYIDHNRSRFCREGFILSL--Y--LEDGSVGYGEVAPLEIHKENLLD 556
+ P +++ H SL Y L +V +E
Sbjct: 1745 EDLKSKGLIPADATFAGH------------SLGEYAAL----ASLADVMSIE-------S 1781
Query: 557 AEEQLRFLLHFMTGAKISYFLPLLKGSFSSWIWSTLGIPACEIFPS-VRCGLEMAILNAI 615
+ ++ + G + +P + S G+ A P V L +
Sbjct: 1782 L---VE-VVFY-RGMTMQVAVP--RDELGR---SNYGMIAIN--PGRVAASFSQEALQYV 1829
Query: 616 AVKHGSSFLNILYPLTEIDEEISKRSTSIK------------ICALIDSNKSPVEVAS-I 662
E + KR+ + + A + ++ + +
Sbjct: 1830 V------------------ERVGKRTGWLVEIVNYNVENQQYVAA---GDLRALDTVTNV 1868
Query: 663 ATTLVEEGFTAIKLKVARRADPIKD 687
+ + I+L+ + + ++
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.9 bits (72), Expect = 1.4
Identities = 21/145 (14%), Positives = 41/145 (28%), Gaps = 43/145 (29%)
Query: 15 SSPYGPVHINCPFREPLDNSPKHWMSSCLKG------LDIWTSSIEPFTKYIQVQHSHAC 68
S+ + P + PF H S L D+ +++ K IQ+
Sbjct: 417 SNRFLP--VASPF---------H--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 69 KSYTYCQMAEVL--ELVQGVNKGLLLVGAVHNEDEIW--AVLHLARHI----------RW 114
++ + +V ++ V W A HI
Sbjct: 464 DGSDLRVLSGSISERIVD-----CIIRLPVK-----WETTTQFKATHILDFGPGGASGLG 513
Query: 115 PVVADILSGLRLRKLLASFLETEQN 139
+ G +R ++A L+ +
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 29.2 bits (65), Expect = 8.3
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 1 MILTTLDSAVHWATSSPYGPVHI 23
I+ V W T++ + HI
Sbjct: 482 CIIR---LPVKWETTTQFKATHI 501
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 53.1 bits (128), Expect = 2e-07
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+ LHG L + W P + S R ++D+ G
Sbjct: 70 LVLLHGALFSSTMWYPNIADWSSKYRTYAVDIIGDKNK 107
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 52.3 bits (126), Expect = 2e-07
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L+ LHG+ E W I + +S +DLPG G S
Sbjct: 16 LVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRS 53
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase,
alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter
nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Length = 276
Score = 52.5 bits (126), Expect = 2e-07
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L L G+ + +++ + R I + GHG S
Sbjct: 30 ILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLS 67
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 52.4 bits (126), Expect = 3e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+LF HG + P+M +S I++D GHG S
Sbjct: 71 MLFFHGITSNSAVFEPLMIRLSDRFTTIAVDQRGHGLS 108
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 50.9 bits (122), Expect = 7e-07
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA--RCISIDLPGHGGS 978
++FLHG + + +S + I +DLPG G S
Sbjct: 24 IIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGMGNS 63
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 50.1 bits (120), Expect = 1e-06
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG G+ + + + + I +D+ HG S
Sbjct: 19 IVLVHGLFGSLDNLGVLARDLVNDHNIIQVDVRNHGLS 56
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 49.6 bits (119), Expect = 2e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + W P + A+S R + D GHG S
Sbjct: 29 IVLSNSLGTDLSMWAPQVAALSKHFRVLRYDTRGHGHS 66
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 49.3 bits (118), Expect = 2e-06
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L L G ++ + ++G R + ++ G G S
Sbjct: 32 VLCLPGLTRNARDFEDLATRLAGDWRVLCPEMRGRGDS 69
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 49.2 bits (118), Expect = 3e-06
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + G G+G W+P + + + + D G G +
Sbjct: 18 VVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNN 55
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 48.8 bits (116), Expect = 4e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 937 QDNILLFLHGF--LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+ +FL G T + + I+ + S ++ID P G S
Sbjct: 40 GNPCFVFLSGAGFFSTADNFANIIDKLPDSIGILTIDAPNSGYS 83
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 48.1 bits (115), Expect = 4e-06
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGSK 979
LLF+HG + + + K + CI +DL GHG SK
Sbjct: 19 LLFVHGSGCNLKIFGELEKYLED-YNCILLDLKGHGESK 56
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 48.5 bits (116), Expect = 4e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ + G L T P+ + ++ I D G G S
Sbjct: 26 VVLVGGALSTRAGGAPLAERLAPHFTVICYDRRGRGDS 63
>3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase;
2.60A {Pseudomonas putida}
Length = 264
Score = 48.3 bits (115), Expect = 5e-06
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L L G+ + + ++ I D GH
Sbjct: 24 LFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAK 61
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 48.0 bits (115), Expect = 6e-06
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L + T W + A++ R + D GHG S
Sbjct: 30 LALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGAS 67
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 47.3 bits (113), Expect = 1e-05
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
L H + + + ++L G G S
Sbjct: 26 LCVTHLYSEYNDNGNTFANPFTDHYSVYLVNLKGCGNS 63
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 47.1 bits (112), Expect = 2e-05
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++FLHG W ++ + +++DLPGHG S
Sbjct: 84 VIFLHGGGQNAHTWDTVIVGL--GEPALAVDLPGHGHS 119
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 46.5 bits (111), Expect = 2e-05
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+LF HG+L + W M+ +S R I+ D G G S
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRS 60
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 46.6 bits (111), Expect = 2e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG + W + A+S R I+ D+ G G +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFT 68
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 46.4 bits (110), Expect = 3e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVS--GSARCISIDLPGHGGS 978
LL LHG + W A+ R +++DL HG +
Sbjct: 41 LLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGET 80
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 46.1 bits (110), Expect = 3e-05
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ LHG W PI+ ++ + ++ DL G G S
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQS 72
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 45.7 bits (109), Expect = 3e-05
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+L HGF W ++ + I D G G S
Sbjct: 31 VLLAHGFGCDQNMWRFMLPELEKQFTVIVFDYVGSGQS 68
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 45.7 bits (109), Expect = 3e-05
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++F GF W + A R I D G G S
Sbjct: 23 IMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHS 60
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 45.8 bits (109), Expect = 4e-05
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F HG+ + W M ++ R I+ D GHG S
Sbjct: 22 IVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRS 60
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 45.4 bits (108), Expect = 4e-05
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F+HG+ G+ W +KAV + R I+ D GHG S
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHS 60
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 44.7 bits (106), Expect = 8e-05
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HG+ +G W + A+ + R I+ D G G S
Sbjct: 30 VVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKS 68
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 44.3 bits (105), Expect = 1e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+L +HG L G W + ++ R ++ DL GHG S
Sbjct: 29 VLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRS 67
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 43.8 bits (104), Expect = 1e-04
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ LHG + + + ++ +++D PG+G S
Sbjct: 39 VVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHS 79
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 43.9 bits (104), Expect = 2e-04
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 941 LLFLHGF---LGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HG + W ++ ++ R I++D+ G G +
Sbjct: 39 VILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKT 79
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 44.0 bits (104), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HGF +G W A+ + R I+ D G G S
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS 65
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKA-VSGSARCISIDLPGHGGS 978
++ +HG+ G W + ++ R I+ D G GGS
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGS 64
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 43.0 bits (102), Expect = 2e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ +HGF +G W A+ + R I+ D G G S
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQS 64
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 43.1 bits (102), Expect = 2e-04
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 924 FIKVQEIGQRIDIQ-------DNILLFLHGFLGTGEEWIP----IMKAVSGSARCISIDL 972
F+ V+E G+ + I D ++ LHG W I V R I +D
Sbjct: 15 FLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDC 74
Query: 973 PGHGGS 978
PG G S
Sbjct: 75 PGWGKS 80
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 938 DNILLFLHGFLGTGEE-WIPIMKAVSGSA-RCISIDLPGHGGS 978
D+ +L L G LG+GE + P +K ++ ++ D G+G S
Sbjct: 23 DHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS 65
>2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase,
luciferase, oxidoreductase; 1.40A {Renilla reniformis}
PDB: 2pse_A 2psj_A* 2psh_A 2psf_A
Length = 318
Score = 43.2 bits (102), Expect = 3e-04
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++FLHG + W ++ + ARCI DL G G S
Sbjct: 46 VIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKS 83
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 42.9 bits (101), Expect = 3e-04
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+L +HG W + ++ + R I++D G S
Sbjct: 49 ILLMHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKS 87
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 42.3 bits (100), Expect = 5e-04
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++F HG+ + ++W M R I+ D GHG S
Sbjct: 24 VVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRS 62
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 42.4 bits (100), Expect = 6e-04
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA--RCISIDLPGHGGS 978
L+ LHG G ++ + A++ I D G G S
Sbjct: 57 LIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNS 96
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 41.9 bits (99), Expect = 6e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+ F HG+ + ++W + R ++ D GHG S
Sbjct: 25 IHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRS 63
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 41.6 bits (98), Expect = 9e-04
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIP--IMKAVSGSARCISIDLPGHGGS 978
++F+ G G G W P + ++ RCI+ D G G +
Sbjct: 46 VVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGAT 85
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 41.2 bits (97), Expect = 0.001
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 941 LLFLHGFLGTGEEWIP----IMKAVSGSARCISIDLPGHGGS 978
++ LHG W + V R I D PG S
Sbjct: 36 VIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKS 77
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei
structural genomics consortium, TBSGC, hydrolase; 1.19A
{Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Length = 297
Score = 41.2 bits (97), Expect = 0.001
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++F HG + W IM + G R ++ DL G G S
Sbjct: 31 IVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGAS 68
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane
dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase;
0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB:
1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A
1iz8_A* 1k5p_A 1k63_A 1k6e_A
Length = 302
Score = 40.5 bits (95), Expect = 0.002
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+LF HG + W IM +G R I+ DL G G S
Sbjct: 32 ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDS 69
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 39.5 bits (92), Expect = 0.002
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 941 LLFLHGFLGTGEEW--IPIMKAVSGSA-RCISIDLPGHGGS 978
+ HG+ T +W + S + D PG G S
Sbjct: 30 IALFHGYSFTSMDWDKADLFNNYSKIGYNVYAPDYPGFGRS 70
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 39.7 bits (93), Expect = 0.003
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 941 LLFLHGFLGTG-EEWIPIMKAVSGSARCISIDLPGHGGSK 979
L LHG G ++ R + D G G S
Sbjct: 28 LFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSL 67
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 39.5 bits (93), Expect = 0.005
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILK 363
P + + G + AIG +V V+ + GD +F + +
Sbjct: 411 PRRRL-------DCG--TWGVMGIGMGYAIGASVTSGSPVVAIEGDSAFGFSGMEIETIC 461
Query: 364 QRMKRKPILMLVINNHG 380
+ P+ +++ NN G
Sbjct: 462 RY--NLPVTIVIFNNGG 476
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 38.4 bits (89), Expect = 0.006
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 941 LLFLHGFLGTGEEW--IPIMKAVSGSA-RCISIDLPGHGGSK 979
+L LHG + E W + + ++ + R ++IDLPG G SK
Sbjct: 35 VLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSK 76
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris}
PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Length = 306
Score = 38.4 bits (90), Expect = 0.008
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
LL LHGF T W + ++ + I DLPG+G S
Sbjct: 36 LLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWS 73
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 38.2 bits (89), Expect = 0.008
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 942 LFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
L LHGF G + + + + C + GHG
Sbjct: 20 LLLHGFTGNSADVRMLGRFLESKGYTCHAPIYKGHGVP 57
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 38.0 bits (89), Expect = 0.010
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
LL LHGF W + ++ + DL G+GGS
Sbjct: 28 LLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGS 65
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 37.6 bits (88), Expect = 0.014
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
++ +HGF T EW +M ++ I+ DLPG G S
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQS 70
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 37.8 bits (87), Expect = 0.014
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSAR--------CISIDLPGHGGSKMQN 982
L+FLHG + W + + + + ID HG S ++N
Sbjct: 55 LVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRN 104
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 37.9 bits (89), Expect = 0.015
Identities = 69/446 (15%), Positives = 134/446 (30%), Gaps = 90/446 (20%)
Query: 47 DIWTSSIEPFTKYIQVQHSHACKSYTYCQMAEVLELVQGVNKGLLLVGA-VHNEDEIWAV 105
D+ + P + + +HA + + + LL V A+
Sbjct: 170 DVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHAL 229
Query: 106 LHLARHIRWPVVADILSGLRLRKLLASFLETEQNILFLDHLDHALLSESVKDWIQF-DVI 164
+ + A +L G F E + F + + +VK+ I+ D +
Sbjct: 230 QKWVKEVPMAH-ATMLMGK------GIFDERQAG--FYGTYSGSASTGAVKEAIEGADTV 280
Query: 165 IQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQ 223
+ +G+R T ++ I V H R I + Q ++ L+++
Sbjct: 281 LCVGTRFTD-TLTAGFTHQLTPAQTIEVQPHAARV--GDVWFTGIP--MNQAIETLVELC 335
Query: 224 VPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHELSRALTSNSALF--VG-NS 280
H + S D SLT+ + L + + G ++
Sbjct: 336 KQHVHAGLMSSSSGAIPFPQP--------DGSLTQENFWRTLQTFIRPGDIILADQGTSA 387
Query: 281 MAIRDLDMY-GRNWTTCTHTVADIMLNSEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC 339
DL + N+ + L + IG+ +
Sbjct: 388 FGAIDLRLPADVNF-----------IVQ-------------------PLWGS-IGYTLAA 416
Query: 340 ---------NKHVLCVVGDISFLHDTNGLAILKQRMKRKPILMLVINNHGGAIFSLLPIA 390
N+ V+ + GD + L + R K+ PI+ LV+NN G +
Sbjct: 417 AFGAQTACPNRRVIVLTGDGAAQLTIQELGSML-RDKQHPII-LVLNNEGYTV------- 467
Query: 391 DRTEPRI--LDQYFYTTHNISIQNLCLAHGLNH----VQVKTKVELEEALSMSQHLGTDR 444
E I +Q + + ++ A L+ +V +L + L H
Sbjct: 468 ---ERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLS 524
Query: 445 VIEVESCIDANATFHSMLRKFARQSA 470
+IEV + +L +
Sbjct: 525 LIEV--MLPKADIP-PLLGALTKALE 547
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 37.9 bits (89), Expect = 0.016
Identities = 56/395 (14%), Positives = 116/395 (29%), Gaps = 84/395 (21%)
Query: 75 QMAEVLELVQGVNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASF 133
+ + L++ ++L+G+ + + + A LA ++ V + + F
Sbjct: 198 AVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAV-TIMAAAK------GFF 250
Query: 134 LETEQNILFLDHLDHALLSESVKDWIQF-DVIIQIGSRITSKRISQMIEECFP-CTYILV 191
E + F + + V++ ++ D ++ I + IL
Sbjct: 251 --PEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFND-YSTVGWSAWPKGPNVILA 307
Query: 192 DNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQIC 251
+ + F+ L + +S S + + S+
Sbjct: 308 EPDRVT--VDGRAYDGFT--LRAFLQALAEKAPARPASAQKSSVPTCSLTATSD------ 357
Query: 252 ADYSLTEPHVAHELSRALTSNSALF--VG-NSMAIRDLDMYGRNWTTCTHTVADIMLNSE 308
+ LT + ++ LTSN+ L G + + +
Sbjct: 358 -EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPR------------------ 398
Query: 309 FPHQWIRVAGNRGASGIDGLLSTAIGFAVGC---------NKHVLCVVGDISFLHDTNGL 359
+ IG++V ++ + +VGD SF +
Sbjct: 399 -GARVE-------LEM--QWGH--IGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEV 446
Query: 360 AILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQNLCLAHGL 419
A + R + I+ +INN G I E I D + N L
Sbjct: 447 AQMV-RYELPVII-FLINNRGYVI----------EIAIHDGPYNYIKNWDYAGLMEVFNA 494
Query: 420 NH-----VQVKTKVELEEALS-MSQHLGTDRVIEV 448
++ T EL EA++ + +IE
Sbjct: 495 GEGHGLGLKATTPKELTEAIARAKANTRGPTLIEC 529
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 37.2 bits (87), Expect = 0.017
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
LL LHG+ T W I ++ + ++ DL G+G S
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDS 65
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 37.1 bits (86), Expect = 0.017
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 942 LFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
L +HGF GT P+ +A + + L GHG
Sbjct: 44 LLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTH 81
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 37.9 bits (89), Expect = 0.018
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 18/82 (21%)
Query: 305 LNSEFPHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTN 357
L + Q + S G L AIG + + V+ V GD FL +
Sbjct: 405 LYTFRARQVM-------ISN--GQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSM 455
Query: 358 GLAILKQRMKRKPILMLVINNH 379
L + + +L L+ ++
Sbjct: 456 ELETAVR--LKANVLHLIWVDN 475
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A
{Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Length = 316
Score = 37.3 bits (87), Expect = 0.020
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+LFLHG + W I+ VS A CI+ DL G G S
Sbjct: 32 VLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS 69
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 37.6 bits (88), Expect = 0.021
Identities = 38/322 (11%), Positives = 95/322 (29%), Gaps = 73/322 (22%)
Query: 75 QMAEVLELVQGVNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASF 133
++++ E ++ K +++ G V + V + P+ + G ++
Sbjct: 217 ILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPI-TTLNFGK------SAV 269
Query: 134 LETEQNILFLDHLDHALLSESVKDWIQF-DVIIQIGSRITSKRISQMIEECFP-CTYILV 191
E+ + FL + L S+K++++ D I+ +G ++T + I +
Sbjct: 270 DESLPS--FLGIYNGKLSEISLKNFVESADFILMLGVKLTD-SSTGAFTHHLDENKMISL 326
Query: 192 DNHPCRHDPSHSVTHRIQSTIVQFVDFLLKVQVPHRSSKWCSFLRALDMMVASEISFQIC 251
+ + V V L +++ ++ + + I
Sbjct: 327 NIDEGI--IFNKVVEDFD--FRAVVSSLSELKGIEYEGQY----------IDKQYEEFIP 372
Query: 252 ADYSLTEPHVAHELSRALTSNSALF--VG-NSMAIRDLDMY-GRNWTTCTHTVADIMLNS 307
+ L++ + + SN + G + + + + +
Sbjct: 373 SSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRF-----------IGQ 421
Query: 308 EFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC---------NKHVLCVVGDISFLHDTNG 358
L + IG+ L +GD S
Sbjct: 422 -------------------PLWGS-IGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQE 461
Query: 359 LAILKQRMKRKPILMLVINNHG 380
L + + + + +INN G
Sbjct: 462 LGLSIRE--KLNPICFIINNDG 481
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 36.8 bits (86), Expect = 0.022
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
LL LHG+ G EW ++ ++ I DL G G S
Sbjct: 32 LLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDS 69
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 37.5 bits (88), Expect = 0.023
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 20/81 (24%)
Query: 308 EFPHQWIRVAGNRGASGIDGL------LSTAIGFAVGC---NKHVLCVVGDISFLHDTNG 358
P ++ G L TA+G V + + V GD S +
Sbjct: 407 VKPGGFL-------CHG--YLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGE 457
Query: 359 LAILKQRMKRKPILMLVINNH 379
L + K+ P++++++NN
Sbjct: 458 FDTLVR--KQLPLIVIIMNNQ 476
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain,
catalytic triad (A His272, Glu130), mutant, I135F,
haloalkanes; 0.95A {Rhodococcus SP} PDB: 3fwh_A 3fbw_A
3rlt_A 3rk4_A 1bn6_A 1bn7_A 1cqw_A 2v9z_A
Length = 299
Score = 36.8 bits (86), Expect = 0.028
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGGS 978
+LFLHG + W I+ V+ S RCI+ DL G G S
Sbjct: 35 VLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS 72
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 36.8 bits (86), Expect = 0.031
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 41/177 (23%)
Query: 309 FPHQWIRVAGNRGASGIDGLLST-------AIGFAVGC-NKHVLCVVGDISFLHDTNGLA 360
+ A G + IG K +L VVGD +F L
Sbjct: 411 IDAGLM-------APG---YYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELG 460
Query: 361 ILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHNISIQN---LCLAH 417
++ ++++ NN + + + + + +A
Sbjct: 461 NCRR--LGIDPIVILFNNASWEM----------LRTFQPESAFN----DLDDWRFADMAA 504
Query: 418 GLNHV--QVKTKVELEEALS-MSQHLGTDRVIEVE-SCIDANATFHSMLRKFARQSA 470
G+ +V+T+ EL+ AL G ++IE + T ++ R A
Sbjct: 505 GMGGDGVRVRTRAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFVQGQKRLHA 561
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 37.1 bits (87), Expect = 0.033
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
P QW+ +SG GL L AIG +V + V+ + GD SF+ + LA +
Sbjct: 416 PRQWL-------SSG--GLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATI 466
Query: 363 KQRMKRKPILMLVINNH 379
+ + P+ +L++NN
Sbjct: 467 RV--ENLPVKVLLLNNQ 481
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 36.4 bits (85), Expect = 0.046
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
P + + S A+G + N V GD + + N +
Sbjct: 414 PRRLV-------TSM--AEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVA 464
Query: 363 KQRMKRKPILMLVINNH 379
+ + P++ +V N
Sbjct: 465 VEH--KLPVITMVFTNE 479
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 35.6 bits (83), Expect = 0.077
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGCNKHVLCVVGDISFLHDTNGLAILK 363
P + + SG + + A K V+ V GD +F L +
Sbjct: 416 PRKRL-------DSG--TWGVMGIGMGYCVAAAAVTGKPVIAVEGDSAFGFSGMELETIC 466
Query: 364 QRMKRKPILMLVINNHG 380
+ P+ ++++NN G
Sbjct: 467 RY--NLPVTVIIMNNGG 481
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 35.6 bits (83), Expect = 0.080
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
P ++ S G + AIG + ++ + GD F +++ L +
Sbjct: 426 PFGFL-------TSA--GCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLETI 476
Query: 363 KQRMKRKPILMLVINNH 379
+ PI+ +V+NN
Sbjct: 477 AR--LNLPIVTVVVNND 491
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 35.7 bits (83), Expect = 0.087
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 308 EFPHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLA 360
PH +I SG GL L AIG V V+ + GD SF L+
Sbjct: 501 RNPHTFI-------TSG--GLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELS 551
Query: 361 ILKQRMKRKPILMLVINNH 379
Q P+ +L++NN
Sbjct: 552 SAVQ--AGTPVKILILNNE 568
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 35.6 bits (83), Expect = 0.089
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 308 EFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAILKQRM 366
P + A G G L + AIG + + V+ V+GD S + + L Q
Sbjct: 390 RNPGSYYFCAA--GGLGF-ALPA-AIGVQLAEPERQVIAVIGDGSANYSISALWTAAQY- 444
Query: 367 KRKPILMLVINNH 379
P + +++NN
Sbjct: 445 -NIPTIFVIMNNG 456
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 35.1 bits (81), Expect = 0.10
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
+ L LHG + ++ + S AR I+ D G G S
Sbjct: 49 VFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKS 88
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 35.3 bits (82), Expect = 0.10
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
WI G + A+G ++V+ + GD F LA+
Sbjct: 432 DRHWI-------NCG--QAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVG 482
Query: 363 KQRMKRKPILMLVINNH 379
Q P + +++NN
Sbjct: 483 AQF--NIPYIHVLVNNA 497
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 35.2 bits (82), Expect = 0.11
Identities = 48/331 (14%), Positives = 93/331 (28%), Gaps = 95/331 (28%)
Query: 152 SESVKDWIQF-DVIIQIGSRITSKRISQMIEECFP-CTYILVDNHPCRHDPSHSVTHRIQ 209
VK+ ++ D+I+ +G+ ++ + + + + + I+
Sbjct: 269 KPEVKEAVESADLILSVGALLSD-FNTGSFSYSYKTKNIVEFHSDHMK----------IR 317
Query: 210 STI---VQFVDFLLKV--QVPHRSSKWCSFLRALDMMVASEISFQICADYSLTEPHVAHE 264
+ VQ L K+ + + + + + + + + + A L + + ++
Sbjct: 318 NATFPGVQMKFVLQKLLTTIADAAKGY----KPVAVPARTPANAAVPASTPLKQEWMWNQ 373
Query: 265 LSRALTSNSALF--VG-NSMAIRDLDMYGRNWTTCTHTVADIMLNSEFPHQWIRVAGNRG 321
L L + G ++ I I
Sbjct: 374 LGNFLQEGDVVIAETGTSAFGINQTTFPN-------------------NTYGI------- 407
Query: 322 ASGIDGLLSTAIGFAVGC-------------NKHVLCVVGDISFLHDTNGLAILKQRMKR 368
+ S IGF G K V+ +GD S ++ + R
Sbjct: 408 SQV--LWGS--IGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMI-RWGL 462
Query: 369 KPILMLVINNHGGAIFSLLPIADRTEPRILDQ-YFYTTHNISIQN---LCLAHGLNHVQ- 423
KP L V+NN G I + I Y IQ L L
Sbjct: 463 KPYL-FVLNNDGYTI----------QKLIHGPKAQYNE----IQGWDHLSLLPTFGAKDY 507
Query: 424 ----VKTKVELEEALSMSQHLGTDR--VIEV 448
V T E ++ + +IEV
Sbjct: 508 ETHRVATTGEWDKLTQDKSFNDNSKIRMIEV 538
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 34.5 bits (79), Expect = 0.12
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 942 LFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
+ LH + G+ + + +A+ S GHG
Sbjct: 26 VLLHAYTGSPNDMNFMARALQRSGYGVYVPLFSGHGTV 63
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 34.4 bits (79), Expect = 0.16
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 941 LLFLHGFLGTGEEWIP--IMKAVSGSARCISIDLPGHGGS 978
LL + G + W + G I D G S
Sbjct: 26 LLLVMGGNLSALGWPDEFARRLADGGLHVIRYDHRDTGRS 65
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 34.8 bits (81), Expect = 0.16
Identities = 59/401 (14%), Positives = 122/401 (30%), Gaps = 88/401 (21%)
Query: 75 QMAEVLELVQGVNKGLLLVGA-VHNEDEIWAVLHLARHIRWPVVADILSGLRLRKLLASF 133
+ E L+ + +K +LVG+ + A + A + V + + SF
Sbjct: 198 AVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVAT-MAAAK-------SF 249
Query: 134 LETEQNILFLDHLDHALLSESVKDWIQF-DVIIQIGSRITSKRISQMIEECFP-CTYILV 191
E+N ++ + V+ ++ D +I + + + +L
Sbjct: 250 FP-EENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFND-YSTTGWTDIPDPKKLVLA 307
Query: 192 DNHPCRHDPSHSVTHRIQSTIVQFVDFLLK-VQVPHRSSKWCSFLRALDMMVASEISFQI 250
+ + + + ++ L + V + + L A ++ A+
Sbjct: 308 EPRSVVV--NGIRFPSVH--LKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPAD--- 360
Query: 251 CADYSLTEPHVAHELSRALTSNSALF--VGNS-MAIRDLDM-YGRNWTTCTHTVADIMLN 306
L +A ++ LT N+ + G+S + + + G
Sbjct: 361 -PSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARV-----------EY 408
Query: 307 SEFPHQWIRVAGNRGASGIDGLLSTAIGFAVGC---------NKHVLCVVGDISFLHDTN 357
IG++V + + +VGD SF
Sbjct: 409 E-------------------MQWGH-IGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQ 448
Query: 358 GLAILKQRMKRKPILMLVINNHGGAIFSLLPIADRTEPRILDQYFYTTHN---------I 408
+A + R+K I+ +INN+G I E I D + N
Sbjct: 449 EVAQMV-RLKLPVII-FLINNYGYTI----------EVMIHDGPYNNIKNWDYAGLMEVF 496
Query: 409 SIQNLCLAHGLNHVQVKTKVELEEALS-MSQHLGTDRVIEV 448
+ + ++ KT EL EA+ + +IE
Sbjct: 497 NGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLIEC 537
>2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold;
1.90A {Plesiocystis pacifica}
Length = 297
Score = 34.0 bits (78), Expect = 0.22
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
L LHG + ++ + + R ++ DL G G S
Sbjct: 48 TFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRS 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.22
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 635 EEISKRSTSIKICALIDSNKSPVEVASIATTLVE 668
+ + K S+K+ A DS +P +A AT +E
Sbjct: 20 QALKKLQASLKLYA-DDS--APA-LAIKAT--ME 47
Score = 29.9 bits (66), Expect = 2.3
Identities = 6/30 (20%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 733 EEPVQNEEDIIK-YCEESGLP-VALDETID 760
++ ++ + +K Y ++S P +A+ T++
Sbjct: 19 KQALKKLQASLKLYADDSA-PALAIKATME 47
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 33.3 bits (76), Expect = 0.29
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 688 AEVIQEVRKKVGHRIELRVDANRNWTYQEALEFGFLIKDCDLQYI------EEPVQNEED 741
+E +++ ++K +ELRVD + + E + L+ I EE + ++
Sbjct: 13 SENLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTILTIRSPEEGGREVKN 72
Query: 742 IIKYCEE-SGLPVALDETIDKFQKDPLNMLEKYAHPGIVAIVI 783
+ EE S L D I+ + L L ++I
Sbjct: 73 REELFEELSPLSDYTD--IELSSRGLLVKLYNITKEAGKKLII 113
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 33.0 bits (75), Expect = 0.42
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSAR-CISIDLPGHGGS 978
++ L G T EE + V + D PG G
Sbjct: 154 AVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEM 193
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.48
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 31/89 (34%)
Query: 678 VARRADPIKDAEVIQEVRKKVGHRI------------ELRVDANR---NWT--YQEALEF 720
+A+ ++ E I++ R++ R+ E R A + W E +E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE- 132
Query: 721 GFLIK------DCDLQYIEEPVQNEEDII 743
K D + ++P + DII
Sbjct: 133 ----KNKINNRIADKAFYQQP---DADII 154
>3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase;
2.20A {Unidentified}
Length = 309
Score = 32.7 bits (75), Expect = 0.59
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+LFLHG + W I+ V + R ++ DL G G S
Sbjct: 32 VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGMGDS 70
>3ps0_A Crispr-associated protein, CSA2; viral resistance, CAS, CASS, RNA-
RNA-recognition motif, nucleic-acid binding; 2.00A
{Sulfolobus solfataricus}
Length = 328
Score = 31.7 bits (71), Expect = 1.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 528 FILSLYLEDGSVGYGEVAPLEIHKENLLDAEEQLR---------FLLHFMTGAKISYFLP 578
+ S L++ + ++ E L+ ++ R LL G K S FLP
Sbjct: 191 YTFSFELDEDLIAVPSTFGEKVKGEEELERQKAKRVKSAIKALYSLLSGNFGGKRSRFLP 250
Query: 579 LLK 581
+K
Sbjct: 251 SMK 253
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 31.4 bits (72), Expect = 1.4
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGSK 979
L+ +HG G +++ ++ ++ + D G G S+
Sbjct: 31 LMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 31.3 bits (70), Expect = 1.4
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
LL LHG G+ E + ++ + ++ D P HG
Sbjct: 27 LLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGER 65
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 31.2 bits (70), Expect = 1.7
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 941 LLFLHGFLGTG------EEWIPIMKA-VSGSARCISIDLPGHGGS 978
++ +HG GT E W I + A +L G
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGFQSD 55
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 31.4 bits (72), Expect = 1.7
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
++ I S + AI + + V + GD LA
Sbjct: 410 SNRHI-------TSN--LFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQ 460
Query: 363 KQRMKRKPILMLVINNH 379
Q P++ +V N
Sbjct: 461 VQY--HLPVINVVFTNC 475
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 30.8 bits (69), Expect = 2.7
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 940 ILLFLHGFLGTGEEWIPIM--KAVSGSARCISIDLPGHGGSKMQN 982
L+ + G + E+ ++ + +DLPG G + Q
Sbjct: 161 TLIVVGGGDTSREDLFYMLGYSGWEHDYNVLMVDLPGQGKNPNQG 205
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 30.4 bits (69), Expect = 2.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
+LF+HGF W M ++ R ++ DL G+G +
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT 72
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 30.4 bits (69), Expect = 2.8
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 336 AVGCNKHVLCVVGDISFLHDTNGL--AILKQRMKRKPILMLVINNHGGAIFSLLPIADRT 393
A + V+ D+ L A+ + +L+INN +
Sbjct: 55 AQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVN 114
Query: 394 EPRILDQYF 402
+ ++ Y+
Sbjct: 115 DLAEVNNYW 123
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 29.5 bits (66), Expect = 4.0
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 938 DNILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLP 973
L LHG +P+ + ++ +A ++
Sbjct: 30 RECLFLLHGSGVDETTLVPLARRIAPTATLVAARGR 65
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 30.0 bits (68), Expect = 4.6
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 689 EVIQEVRKKVGHR--IELRVDANRNWTYQEALEFGFLIKDCDLQYIEEPVQNEEDII 743
E +++V+ VG I R + G + + D Q E + D+
Sbjct: 204 ETLEKVKHAVGSDCAIATRFGVD------TVYGPGQIEAEVDGQKFVEMADSLVDMW 254
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 29.6 bits (66), Expect = 4.7
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 941 LLFLHGFLGTGEEWIPIMKAVSGSA-RCISIDLPGHGGS 978
++ LHGF + W + A++G+ R ++ID G+G S
Sbjct: 30 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRS 68
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 29.9 bits (68), Expect = 4.9
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 18/77 (23%)
Query: 310 PHQWIRVAGNRGASGIDGL------LSTAIGFAVGC-NKHVLCVVGDISFLHDTNGLAIL 362
+ W S + +G ++ V ++GD +F +
Sbjct: 403 KNMWR-------TSP--LFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTN 453
Query: 363 KQRMKRKPILMLVINNH 379
+ P++ +V +N
Sbjct: 454 VRY--NMPVINVVFSNT 468
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 29.3 bits (65), Expect = 5.3
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 942 LFLHGFLGTGEEWIPIMKAVSGS-ARCISIDLPGHGGS 978
+ +H W + + + ++DL G
Sbjct: 7 VLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVD 44
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 29.2 bits (65), Expect = 5.9
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSARCISIDLPGHGG 977
+ + LHG G ++ + A +S
Sbjct: 64 LFVLLHGTGGDENQFFDFGARLLPQATILSPVGDVSEH 101
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 29.4 bits (65), Expect = 6.0
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 939 NILLFLHGFLGTGEEWI--PIMKAVSGSARCI-SIDLPGHGGSKMQ 981
+L + G TG + + + I P + Q
Sbjct: 32 KPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDTQ 77
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 28.7 bits (64), Expect = 6.1
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 7/45 (15%)
Query: 940 ILLFLHGFLGTGEEWIPIMKAVSGSAR-----CISIDLPGHGGSK 979
+ HGF + A++ A D +
Sbjct: 6 HCILAHGFESG--PDALKVTALAEVAERLGWTHERPDFTDLDARR 48
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 29.2 bits (65), Expect = 7.2
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 3/117 (2%)
Query: 712 WTYQEALEFGFLIKDCDLQYIEEPVQNEEDIIKYCEESGLPVALDETIDKFQKDPLNMLE 771
+ EFG + +++ + ++N S +P A D + +
Sbjct: 119 TIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILAD 178
Query: 772 KYAHPGIVAI---VIKPSVIGGFENAGLIARWAQRHGKMAVVSAAFESGLGLSAYII 825
+ P I I + VI I + K+ A L+A++
Sbjct: 179 LLSWPEIGGIAEIMNMRGVIERDPRMSGIVQAGLAAEKLVCGHARGLKNADLNAFMA 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.416
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,042,581
Number of extensions: 927106
Number of successful extensions: 2672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2313
Number of HSP's successfully gapped: 253
Length of query: 983
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 880
Effective length of database: 3,825,930
Effective search space: 3366818400
Effective search space used: 3366818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.9 bits)