Query 041114
Match_columns 680
No_of_seqs 392 out of 4326
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.6E-76 1E-80 667.9 36.3 640 14-672 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.7E-44 1.2E-48 427.8 35.7 415 195-654 370-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.8 2E-20 4.3E-25 192.5 5.4 107 196-304 178-284 (287)
4 PLN03210 Resistant to P. syrin 99.7 1.3E-16 2.8E-21 192.4 13.9 250 375-641 556-845 (1153)
5 KOG0444 Cytoskeletal regulator 99.7 1.1E-18 2.3E-23 181.4 -5.4 248 357-626 34-321 (1255)
6 PLN00113 leucine-rich repeat r 99.6 1.4E-15 2.9E-20 183.0 12.7 168 375-547 116-294 (968)
7 PLN00113 leucine-rich repeat r 99.6 7.8E-15 1.7E-19 176.4 13.9 215 375-605 138-366 (968)
8 KOG0444 Cytoskeletal regulator 99.5 3.3E-16 7.2E-21 163.0 -4.3 253 372-637 98-378 (1255)
9 KOG4194 Membrane glycoprotein 99.5 2.4E-15 5.2E-20 155.9 -0.6 242 377-637 173-431 (873)
10 KOG4194 Membrane glycoprotein 99.4 8E-14 1.7E-18 144.8 4.1 244 377-639 125-409 (873)
11 KOG0472 Leucine-rich repeat pr 99.4 2.7E-14 5.9E-19 142.1 0.0 104 368-475 196-306 (565)
12 PRK15387 E3 ubiquitin-protein 99.2 8.7E-11 1.9E-15 132.5 14.9 147 356-523 202-353 (788)
13 KOG0617 Ras suppressor protein 99.2 3.4E-13 7.3E-18 119.3 -5.7 89 369-477 25-113 (264)
14 KOG0472 Leucine-rich repeat pr 99.2 2.8E-13 6.1E-18 135.0 -8.3 226 402-654 77-308 (565)
15 KOG0618 Serine/threonine phosp 99.1 5.2E-12 1.1E-16 138.4 -1.6 237 377-633 219-488 (1081)
16 PRK15370 E3 ubiquitin-protein 99.1 2.1E-10 4.6E-15 130.2 9.8 107 360-477 183-294 (754)
17 KOG4237 Extracellular matrix p 99.0 3.9E-11 8.5E-16 119.8 0.6 119 358-494 49-172 (498)
18 PRK15370 E3 ubiquitin-protein 99.0 4.3E-10 9.3E-15 127.7 7.8 223 378-642 179-408 (754)
19 KOG0617 Ras suppressor protein 99.0 7.8E-12 1.7E-16 110.8 -5.2 156 415-589 31-189 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.0 5.5E-10 1.2E-14 128.8 6.3 239 402-654 532-781 (889)
21 PRK15387 E3 ubiquitin-protein 99.0 2.2E-09 4.7E-14 121.4 10.4 225 360-632 227-456 (788)
22 KOG0618 Serine/threonine phosp 98.8 2.3E-09 4.9E-14 118.1 2.2 104 377-484 45-155 (1081)
23 KOG4237 Extracellular matrix p 98.6 1.1E-08 2.3E-13 102.7 0.9 114 360-475 72-197 (498)
24 cd00116 LRR_RI Leucine-rich re 98.6 3.3E-08 7.1E-13 103.3 4.5 185 413-606 77-289 (319)
25 cd00116 LRR_RI Leucine-rich re 98.6 3E-08 6.5E-13 103.5 2.9 205 413-631 47-288 (319)
26 KOG3207 Beta-tubulin folding c 98.4 6.6E-08 1.4E-12 98.5 1.9 204 376-603 120-334 (505)
27 PF14580 LRR_9: Leucine-rich r 98.4 1.6E-07 3.5E-12 87.2 4.3 96 377-494 19-121 (175)
28 KOG1259 Nischarin, modulator o 98.4 7.2E-08 1.6E-12 93.3 1.7 138 481-639 279-416 (490)
29 KOG2120 SCF ubiquitin ligase, 98.4 2.2E-08 4.7E-13 96.9 -2.5 177 417-606 185-374 (419)
30 KOG0532 Leucine-rich repeat (L 98.4 2.8E-08 6.1E-13 104.1 -2.1 185 378-582 76-270 (722)
31 KOG0532 Leucine-rich repeat (L 98.4 3.2E-08 6.9E-13 103.7 -2.2 113 402-523 130-245 (722)
32 PF13855 LRR_8: Leucine rich r 98.3 5.3E-07 1.2E-11 68.6 4.3 59 417-477 1-60 (61)
33 KOG3207 Beta-tubulin folding c 98.3 1.8E-07 3.9E-12 95.3 1.9 199 414-627 118-332 (505)
34 KOG1259 Nischarin, modulator o 98.2 4E-07 8.6E-12 88.3 1.4 128 416-583 283-410 (490)
35 PF14580 LRR_9: Leucine-rich r 98.1 3.1E-06 6.8E-11 78.7 4.9 118 357-494 21-148 (175)
36 COG4886 Leucine-rich repeat (L 98.1 2.7E-06 5.9E-11 91.7 5.2 171 414-605 113-287 (394)
37 PRK15386 type III secretion pr 98.1 1.6E-05 3.4E-10 83.0 9.3 161 413-608 48-213 (426)
38 PF12799 LRR_4: Leucine Rich r 98.0 7E-06 1.5E-10 57.3 4.4 41 417-459 1-41 (44)
39 KOG4341 F-box protein containi 98.0 4.9E-07 1.1E-11 91.8 -2.6 255 414-678 187-466 (483)
40 PF13855 LRR_8: Leucine rich r 98.0 7.2E-06 1.6E-10 62.3 3.7 57 378-451 2-59 (61)
41 COG4886 Leucine-rich repeat (L 98.0 8.3E-06 1.8E-10 87.9 5.4 175 377-589 116-294 (394)
42 KOG2120 SCF ubiquitin ligase, 97.9 3.3E-07 7.1E-12 88.9 -5.5 178 442-631 186-373 (419)
43 KOG4341 F-box protein containi 97.7 2.6E-06 5.6E-11 86.6 -3.1 216 413-637 160-388 (483)
44 KOG1859 Leucine-rich repeat pr 97.7 5.5E-06 1.2E-10 89.6 -1.6 115 402-523 173-290 (1096)
45 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.9E-10 87.2 3.0 129 413-545 144-283 (699)
46 PLN03150 hypothetical protein; 97.6 0.0002 4.3E-09 81.4 8.7 62 413-477 438-501 (623)
47 PRK15386 type III secretion pr 97.5 0.00016 3.5E-09 75.6 6.7 64 481-553 47-110 (426)
48 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.5E-09 51.1 3.3 35 441-477 1-35 (44)
49 KOG2982 Uncharacterized conser 97.3 0.00012 2.6E-09 71.5 2.8 175 413-603 93-287 (418)
50 PLN03150 hypothetical protein; 97.3 0.00059 1.3E-08 77.6 8.4 76 418-496 419-500 (623)
51 KOG1909 Ran GTPase-activating 97.3 0.00018 4E-09 71.9 3.6 241 371-632 24-309 (382)
52 KOG0531 Protein phosphatase 1, 97.3 0.00011 2.3E-09 79.6 1.8 105 375-501 93-201 (414)
53 KOG1909 Ran GTPase-activating 97.3 7.2E-05 1.6E-09 74.8 0.2 185 413-607 88-310 (382)
54 KOG1859 Leucine-rich repeat pr 97.2 1.5E-05 3.2E-10 86.4 -5.1 110 362-477 94-220 (1096)
55 KOG0531 Protein phosphatase 1, 97.2 7.6E-05 1.7E-09 80.8 -0.4 105 413-523 91-197 (414)
56 KOG2982 Uncharacterized conser 97.1 0.00028 6.1E-09 69.0 2.1 78 414-494 68-154 (418)
57 KOG4579 Leucine-rich repeat (L 97.0 0.0003 6.6E-09 61.0 1.2 82 377-477 53-134 (177)
58 KOG3665 ZYG-1-like serine/thre 96.8 0.0011 2.3E-08 75.5 4.2 128 416-546 121-259 (699)
59 KOG1947 Leucine rich repeat pr 95.9 0.0013 2.9E-08 72.6 -1.6 117 414-550 185-308 (482)
60 KOG1947 Leucine rich repeat pr 95.7 0.0042 9.1E-08 68.7 1.2 83 413-495 210-304 (482)
61 KOG3864 Uncharacterized conser 95.6 0.0011 2.3E-08 61.7 -3.1 70 532-610 120-191 (221)
62 KOG1644 U2-associated snRNP A' 95.2 0.023 4.9E-07 53.1 4.2 80 413-494 60-148 (233)
63 PF00560 LRR_1: Leucine Rich R 95.2 0.01 2.2E-07 34.5 1.3 21 442-464 1-21 (22)
64 KOG1644 U2-associated snRNP A' 94.8 0.037 8E-07 51.7 4.3 57 417-477 42-99 (233)
65 PF05659 RPW8: Arabidopsis bro 94.6 0.1 2.2E-06 47.1 6.6 106 6-128 8-113 (147)
66 KOG2739 Leucine-rich acidic nu 94.6 0.023 4.9E-07 55.2 2.5 63 413-478 61-128 (260)
67 PF00560 LRR_1: Leucine Rich R 94.1 0.024 5.1E-07 32.9 1.0 22 418-440 1-22 (22)
68 KOG3864 Uncharacterized conser 93.8 0.016 3.5E-07 54.0 -0.2 36 511-546 150-185 (221)
69 KOG2739 Leucine-rich acidic nu 93.8 0.038 8.2E-07 53.8 2.3 106 415-523 41-154 (260)
70 PF13306 LRR_5: Leucine rich r 93.3 0.22 4.8E-06 43.8 6.3 65 407-475 2-67 (129)
71 PF13504 LRR_7: Leucine rich r 92.9 0.072 1.6E-06 28.6 1.5 16 442-458 2-17 (17)
72 KOG4579 Leucine-rich repeat (L 92.8 0.027 5.8E-07 49.2 -0.4 62 413-477 49-111 (177)
73 PF13504 LRR_7: Leucine rich r 91.7 0.11 2.5E-06 27.9 1.3 17 417-434 1-17 (17)
74 KOG2123 Uncharacterized conser 90.3 0.024 5.3E-07 55.3 -3.6 78 415-497 17-99 (388)
75 smart00370 LRR Leucine-rich re 90.2 0.24 5.3E-06 29.8 2.0 20 440-460 1-20 (26)
76 smart00369 LRR_TYP Leucine-ric 90.2 0.24 5.3E-06 29.8 2.0 20 440-460 1-20 (26)
77 COG5238 RNA1 Ran GTPase-activa 89.7 0.26 5.6E-06 48.3 2.8 242 375-637 28-318 (388)
78 KOG2123 Uncharacterized conser 88.9 0.095 2.1E-06 51.4 -0.7 79 377-476 19-98 (388)
79 PF12061 DUF3542: Protein of u 86.0 1.6 3.6E-05 43.6 5.8 71 14-91 302-372 (402)
80 KOG0473 Leucine-rich repeat pr 83.7 0.21 4.6E-06 47.7 -1.3 67 413-482 61-127 (326)
81 COG5238 RNA1 Ran GTPase-activa 83.6 2.3 4.9E-05 42.0 5.5 191 413-611 88-318 (388)
82 PRK04841 transcriptional regul 80.9 10 0.00022 45.8 11.2 122 201-349 206-332 (903)
83 PF13306 LRR_5: Leucine rich r 79.3 5.3 0.00011 34.8 6.1 75 513-603 13-89 (129)
84 smart00370 LRR Leucine-rich re 78.7 1.8 3.9E-05 26.0 2.0 22 416-438 1-22 (26)
85 smart00369 LRR_TYP Leucine-ric 78.7 1.8 3.9E-05 26.0 2.0 22 416-438 1-22 (26)
86 PF13747 DUF4164: Domain of un 71.0 20 0.00044 29.2 6.8 72 14-89 17-88 (89)
87 smart00367 LRR_CC Leucine-rich 68.8 2.7 5.9E-05 25.2 1.0 17 595-611 2-18 (26)
88 COG3074 Uncharacterized protei 67.0 23 0.00051 26.7 5.7 73 14-86 6-78 (79)
89 smart00364 LRR_BAC Leucine-ric 60.0 5.6 0.00012 24.1 1.2 18 441-459 2-19 (26)
90 PTZ00202 tuzin; Provisional 58.3 75 0.0016 34.4 9.8 34 152-185 261-297 (550)
91 PF01637 Arch_ATPase: Archaeal 51.1 11 0.00023 36.6 2.4 31 155-185 1-31 (234)
92 smart00365 LRR_SD22 Leucine-ri 49.1 14 0.0003 22.4 1.7 17 440-457 1-17 (26)
93 PF13516 LRR_6: Leucine Rich r 46.5 11 0.00025 21.9 1.0 11 441-451 2-12 (24)
94 PRK11020 hypothetical protein; 39.3 2.2E+02 0.0048 24.1 7.7 51 38-90 3-53 (118)
95 KOG0473 Leucine-rich repeat pr 39.2 4 8.7E-05 39.4 -2.6 48 403-452 75-122 (326)
96 PF10168 Nup88: Nuclear pore c 35.7 2.3E+02 0.005 33.0 10.1 102 33-134 579-717 (717)
97 PF06103 DUF948: Bacterial pro 35.3 2.4E+02 0.0052 22.8 8.0 49 35-90 21-69 (90)
98 PF13191 AAA_16: AAA ATPase do 30.6 33 0.0007 31.9 2.0 31 155-185 2-35 (185)
99 smart00368 LRR_RI Leucine rich 28.1 45 0.00097 20.4 1.6 11 441-451 2-12 (28)
100 PF10458 Val_tRNA-synt_C: Valy 27.6 2.7E+02 0.0059 21.0 6.5 60 31-90 2-61 (66)
101 KOG4460 Nuclear pore complex, 25.6 9.5E+02 0.021 26.6 12.0 59 36-94 584-642 (741)
102 PF11802 CENP-K: Centromere-as 25.1 7E+02 0.015 24.9 12.0 55 32-93 91-145 (268)
103 CHL00095 clpC Clp protease ATP 24.8 89 0.0019 37.2 4.6 74 155-236 181-259 (821)
104 COG1579 Zn-ribbon protein, pos 24.6 5E+02 0.011 25.6 8.9 60 33-92 52-120 (239)
105 KOG2196 Nuclear porin [Nuclear 24.6 6.8E+02 0.015 24.6 10.1 79 14-96 80-158 (254)
106 PF05008 V-SNARE: Vesicle tran 24.5 3.4E+02 0.0074 21.1 9.2 54 68-129 21-74 (79)
107 PF02403 Seryl_tRNA_N: Seryl-t 23.6 4.4E+02 0.0095 22.0 8.7 66 27-93 30-95 (108)
108 PHA01750 hypothetical protein 23.5 2.6E+02 0.0056 21.1 5.0 13 34-46 43-55 (75)
109 PF12297 EVC2_like: Ellis van 21.8 1E+03 0.022 25.6 11.3 80 14-93 267-350 (429)
110 PF06148 COG2: COG (conserved 21.7 2.3E+02 0.005 24.9 5.7 68 14-81 43-110 (133)
111 PF06785 UPF0242: Uncharacteri 21.5 9E+02 0.02 24.9 12.7 63 30-92 124-186 (401)
112 KOG3809 Microtubule-binding pr 21.1 5.7E+02 0.012 27.3 8.8 81 15-95 489-569 (583)
113 PF06320 GCN5L1: GCN5-like pro 21.0 5.3E+02 0.011 22.4 7.5 54 25-79 46-99 (121)
114 COG3879 Uncharacterized protei 20.6 3.7E+02 0.008 26.5 7.0 57 5-61 22-78 (247)
115 PF10146 zf-C4H2: Zinc finger- 20.4 6.2E+02 0.014 24.8 8.7 14 118-131 90-103 (230)
116 KOG2391 Vacuolar sorting prote 20.2 1.8E+02 0.0038 29.9 4.9 22 14-35 216-237 (365)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-76 Score=667.89 Aligned_cols=640 Identities=35% Similarity=0.597 Sum_probs=508.5
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSK 93 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~ 93 (680)
++++++.+.+++..+.+.++++..|++.+..|+.+ ++||++++.. ...+..|.+.+++++|+++|+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~-------l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSA-------LEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999 9999999988 888999999999999999999998865
Q ss_pred Hhc----------------ccCCCCccCCCchhhhhHHHHHHHHHHHHHHHHhcCCceeecc-CCCCCCcccccccccc-
Q 041114 94 EID----------------KLCPRAYCSKSCKSSYKFRKQVAKKLRDVRTLIGEGVFEVVAE-RPPQPVADEIPTEQIV- 155 (680)
Q Consensus 94 ~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v- 155 (680)
+.. +.|+.++|+..+...|.+++++-+++++++.+..++.|..++. ..|......+|..++.
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 543 2377788888888899999999999999999999988887765 3444455666665554
Q ss_pred ccHHHHHHHHHHHhhhccccceeeeccccc--------------------------------------------------
Q 041114 156 EGLQSQLKQVWRCLVEESIGIIGLYGMGSV-------------------------------------------------- 185 (680)
Q Consensus 156 ~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi-------------------------------------------------- 185 (680)
||.+.+++++|+.|.+++.+|+|||||||+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 799999999999999988899999999999
Q ss_pred --------------------------------------------------------------------------------
Q 041114 186 -------------------------------------------------------------------------------- 185 (680)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (680)
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence
Q ss_pred -------eecCccccCCCccHHHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHH
Q 041114 186 -------EKVGEETLDSHHDILELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPL 258 (680)
Q Consensus 186 -------~~~~~~~~~~~~~l~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~ 258 (680)
++++......+++++++|++||++|+|||||++++|++|+.|++.++|+++.+.+.++...+.+++.+.++++
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 4455554456677999999999999999999999999999999999999999999882256667778899999
Q ss_pred HHHhHhcCCchhHHHHHHHhcccCCCcccChHHHHHHHHHcCCcCC-CChhhHHHHHHHHHHHHHHccccccc----Ccc
Q 041114 259 LKFSYDSLQNDVIRSCFLYCCLYPEDFAILKRDLIDCWIGEGFLDE-RDSFSAQNQGYYIVGTLVHAWLLEEV----GDD 333 (680)
Q Consensus 259 L~~Sy~~L~~~~lk~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~-~~~~~~~~~g~~~~~~L~~~~ll~~~----~~~ 333 (680)
|++|||+||+ ++|+||+|||+||+||.|++++||.+||||||+.. ..++.+++.|+.|+.+|++++|++.. ...
T Consensus 401 LklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 401 LKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 9999999996 99999999999999999999999999999999999 77899999999999999999999986 348
Q ss_pred cEEechhHHHHHHHHHhhhhcccccEEEecCCCcccccccccccceEEEEeecccccccccCCCCccc------cc--cc
Q 041114 334 KVKLHGVLHDMALWISCEIEEEKENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HY--EF 405 (680)
Q Consensus 334 ~~~mhdl~~d~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~--~l 405 (680)
+|+|||+|||||.++|++.+..++++++..+.+..+.|....|..+|++++.++.+..++....++++ .+ .+
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l 559 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL 559 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhh
Confidence 99999999999999999888877888888877888899999999999999999999999888888876 33 37
Q ss_pred cccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhh
Q 041114 406 KMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKE 481 (680)
Q Consensus 406 ~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~ 481 (680)
..++..||..|+.||||||++|..+.+||++|++|.|||||+++++ .++.+|.+ +++|..|++|++..+.. +.-
T Consensus 560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccch
Confidence 8899999999999999999999999999999999999999999999 89999998 99999999999986542 122
Q ss_pred hcCCCCCceeEEEecc--------------------------chhhhhhhhchhhhccccEEEEeccCCCCccccccccc
Q 041114 482 LLGLKHLEELDFTLRC--------------------------VHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALAR 535 (680)
Q Consensus 482 l~~L~~L~~L~i~~~~--------------------------~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~ 535 (680)
+..|++|+.|.+.... ...+..+.....+.+..+.+.+.++. ..... +++..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~-~~~~~ 715 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS-KRTLI-SSLGS 715 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc-cceee-ccccc
Confidence 2335666666554322 11111222222222233333333322 12222 47788
Q ss_pred CCCCCEEEEeccCCcceeecccCCCCccCCCCCC-CCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhc
Q 041114 536 LKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPF-VFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISA 614 (680)
Q Consensus 536 l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~-~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~ 614 (680)
+.+|+.|.+.+|...+.. ..+.... ... .|+++.++.+.+|...+.+.|....|+|+.|.+..|..++++++.
T Consensus 716 l~~L~~L~i~~~~~~e~~-~~~~~~~-----~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIV-IEWEESL-----IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred ccCcceEEEEcCCCchhh-ccccccc-----chhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 999999999999876532 2222110 001 255666666667766666666666777777777777666655332
Q ss_pred CC-----------CC----------------------CCCcccccCccccccCCCCCCCCccccCc--ceEEecc-cccc
Q 041114 615 GK-----------FV----------------------HTPEMMGNTMDPCAKLRKLPLDSNSALEH--KIAIRGE-AGWW 658 (680)
Q Consensus 615 ~~-----------~~----------------------~lp~L~~L~i~~C~~L~~lP~~~~~~l~~--L~i~~~~-~~~~ 658 (680)
.. +. .+++|+.+.+..||+++.+|......... -.+...+ .+|.
T Consensus 790 ~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~ 869 (889)
T KOG4658|consen 790 LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWL 869 (889)
T ss_pred HHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccce
Confidence 10 00 13344555699999999999875542221 1233333 5678
Q ss_pred ccCccCchhhhccc
Q 041114 659 GCLQWENEATQIAF 672 (680)
Q Consensus 659 ~~l~w~~~~~~~~~ 672 (680)
+.++|++..++..|
T Consensus 870 ~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 870 EGVYWEDELTKLRF 883 (889)
T ss_pred eeEEehhhhhhhhc
Confidence 88899998888777
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.7e-44 Score=427.75 Aligned_cols=415 Identities=22% Similarity=0.273 Sum_probs=253.6
Q ss_pred CCccHHHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcCCchhHHHH
Q 041114 195 SHHDILELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSLQNDVIRSC 274 (680)
Q Consensus 195 ~~~~l~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~lk~c 274 (680)
+++++++++++||++|+|+|||++++|+.|++ ++..+|+.+++.++. .+ +++|.++|++||++|+++..|.|
T Consensus 370 ~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~-~~------~~~I~~~L~~SYd~L~~~~~k~~ 441 (1153)
T PLN03210 370 PPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRN-GL------DGKIEKTLRVSYDGLNNKKDKAI 441 (1153)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHh-Cc------cHHHHHHHHHhhhccCccchhhh
Confidence 45578999999999999999999999999998 689999999998887 43 34899999999999987359999
Q ss_pred HHHhcccCCCcccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHcccccccCcccEEechhHHHHHHHHHhhh--
Q 041114 275 FLYCCLYPEDFAILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEVGDDKVKLHGVLHDMALWISCEI-- 352 (680)
Q Consensus 275 fl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~mhdl~~d~a~~i~~~~-- 352 (680)
|++||+||.++.++ .+..|+|.+.+.. +. -++.|+++||++.. ...++|||++|+||+++++++
T Consensus 442 Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-------~~---~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 442 FRHIACLFNGEKVN---DIKLLLANSDLDV-------NI---GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred hheehhhcCCCCHH---HHHHHHHhcCCCc-------hh---ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcC
Confidence 99999999987553 4778888876543 11 28899999999886 568999999999999999774
Q ss_pred hcccccEEEecCC------------Ccc-------------------------------------------ccccc-c-c
Q 041114 353 EEEKENFLVCAGR------------GLK-------------------------------------------EAPEV-K-E 375 (680)
Q Consensus 353 ~~~~~~~~~~~~~------------~~~-------------------------------------------~~~~~-~-~ 375 (680)
.+.++.+++.... ... .+|.. . -
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 2333334432100 000 00000 0 0
Q ss_pred ccceEEEEeecccccccccCCCCccc------cccccccchhh----------------------hccCCcceEEEccCC
Q 041114 376 WETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGF----------------------FQFMPLLKVLNMSRE 427 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~----------------------~~~l~~Lr~LdL~~~ 427 (680)
..++|.+.+.++.+..+|......+| .+.+..++.++ ++.+++|+.|+|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 12355555555544445443322233 33333343331 444555555555555
Q ss_pred CCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcC-CCCCceeEEEeccchhhhhhhh
Q 041114 428 TNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLG-LKHLEELDFTLRCVHSLQILVS 506 (680)
Q Consensus 428 ~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~-L~~L~~L~i~~~~~~~l~~l~~ 506 (680)
..+..+|.+|++|++|++|++++|..++.+|.. + ++++|++|++++|..+..++. ..+|+.|++..+.. ..+|.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i---~~lP~ 742 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI---EEFPS 742 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc---ccccc
Confidence 555555555555555555555555555555553 3 555555555555544333322 23444444432221 11111
Q ss_pred c------------------------------hhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecc
Q 041114 507 S------------------------------NKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTD 556 (680)
Q Consensus 507 ~------------------------------~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 556 (680)
. .....+|+.|++++|.....+|. +++++++|+.|++++|..++.++..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCC
Confidence 0 01123566667766666666663 5677777777777777777655321
Q ss_pred cCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCC
Q 041114 557 YTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRK 636 (680)
Q Consensus 557 ~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~ 636 (680)
..+++|++|++++|..+..+|. ..++|+.|++++ +.++++|.. .+.+++|+.|++.+|++|+.
T Consensus 822 ------------~~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~-n~i~~iP~s--i~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 822 ------------INLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR-TGIEEVPWW--IEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ------------CCccccCEEECCCCCccccccc--cccccCEeECCC-CCCccChHH--HhcCCCCCEEECCCCCCcCc
Confidence 2356667777777666655542 234555555555 344455432 25577777777777777777
Q ss_pred CCCCCcc--ccCcceEEecc
Q 041114 637 LPLDSNS--ALEHKIAIRGE 654 (680)
Q Consensus 637 lP~~~~~--~l~~L~i~~~~ 654 (680)
+|..... .|+.|.+.+|.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCcccccccCCCeeecCCCc
Confidence 7765443 34444555554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.80 E-value=2e-20 Score=192.52 Aligned_cols=107 Identities=37% Similarity=0.725 Sum_probs=92.0
Q ss_pred CccHHHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcCCchhHHHHH
Q 041114 196 HHDILELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSLQNDVIRSCF 275 (680)
Q Consensus 196 ~~~l~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~lk~cf 275 (680)
++.+.+++++|+++|+|+|||++++|++|+.+.+..+|+.+++.+.. ...+..+....+..++.+||+.||+ ++|.||
T Consensus 178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~-~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~f 255 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELEN-SLRESRDYDRSVFSALELSYDSLPD-ELRRCF 255 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHH-CHTCSSGSCHHHHHHHHHHHHSSHT-CCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceechhcCCc-cHHHHH
Confidence 45567889999999999999999999999776688999999998888 5544444456899999999999999 999999
Q ss_pred HHhcccCCCcccChHHHHHHHHHcCCcCC
Q 041114 276 LYCCLYPEDFAILKRDLIDCWIGEGFLDE 304 (680)
Q Consensus 276 l~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~ 304 (680)
+|||+||+++.|+++.|+++|++||||+.
T Consensus 256 ~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 256 LYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred hhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999999987
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.3e-16 Score=192.39 Aligned_cols=250 Identities=20% Similarity=0.266 Sum_probs=180.8
Q ss_pred cccceEEEEeeccccc-------ccccCC-C----Cccc---cccccccchhhhccCCcceEEEccCCCCccccchhhhc
Q 041114 375 EWETVRRLSLMQNQIK-------ILSEAP-T----CPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKA 439 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~-------~l~~~~-~----~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~ 439 (680)
...+++.+.+..+... .+|... . +..| .+.++.+|.. | .+.+|+.|+|++ +.+..+|.++..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~-s~l~~L~~~~~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQG-SKLEKLWDGVHS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcC-cccccccccccc
Confidence 4678888888655321 123221 1 1111 6778899987 4 579999999999 589999999999
Q ss_pred cCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhcccc
Q 041114 440 LVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTR 515 (680)
Q Consensus 440 L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~ 515 (680)
+++|++|+|++|..++.+|. ++.+++|++|++.+|.. +..+++|++|+.|++. ++..+..++... .+++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~--~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS--RCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC--CCCCcCccCCcC-CCCCCC
Confidence 99999999999878999996 89999999999999874 4566788999999887 444566666543 356899
Q ss_pred EEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCc--------------------cCCCCCCCCCCcc
Q 041114 516 ALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTV--------------------LKSPQPFVFCSLH 575 (680)
Q Consensus 516 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~--------------------l~~~~~~~l~~L~ 575 (680)
.|++++|..+..++. ..++|+.|+++++. ++.++... .... +.+.....+++|+
T Consensus 708 ~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD----ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred EEeCCCCCCcccccc----ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 999999877666552 23577777776543 34333211 0000 0011112346889
Q ss_pred EEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 576 KVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 576 ~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
.|+|++|+.+..+| .++++++|+.|+|++|+.++.+|.. ..+++|+.|++++|.+|+.+|..+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccc
Confidence 99999988887777 4788999999999999888888654 368899999999999888887543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.67 E-value=1.1e-18 Score=181.39 Aligned_cols=248 Identities=19% Similarity=0.218 Sum_probs=148.6
Q ss_pred ccEEEecCCCccccccc-ccccceEEEEeecccccccccC-CCCccc-------------------------------cc
Q 041114 357 ENFLVCAGRGLKEAPEV-KEWETVRRLSLMQNQIKILSEA-PTCPHL-------------------------------HY 403 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~-~~~~~~r~lsl~~~~~~~l~~~-~~~~~L-------------------------------~~ 403 (680)
-.|+.....++..+|.. ....++.||++.+|.+..+.+. ..++.| .+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh
Confidence 36777777777777743 4456888888888877654332 223333 33
Q ss_pred cccccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----c
Q 041114 404 EFKMITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----L 478 (680)
Q Consensus 404 ~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~ 478 (680)
.++.+|.+ +...+++-||+||+ ++|+.+|.+ +-+|+-|-+|||++| .+..+|+. +..|.+||+|+++++. -
T Consensus 114 qL~EvP~~-LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 114 QLREVPTN-LEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred hhhhcchh-hhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence 33444444 34444445555555 466666644 446677777777777 57777776 7777777777777765 2
Q ss_pred hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccC
Q 041114 479 AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYT 558 (680)
Q Consensus 479 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (680)
+..+++++.|+.|+++.. ...+.++|.+..-+.+|+.++++.+. +..+|. .+-++++|+.|++++ +.++.+....
T Consensus 190 LrQLPsmtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe-cly~l~~LrrLNLS~-N~iteL~~~~- 264 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPE-CLYKLRNLRRLNLSG-NKITELNMTE- 264 (1255)
T ss_pred HhcCccchhhhhhhcccc-cchhhcCCCchhhhhhhhhccccccC-CCcchH-HHhhhhhhheeccCc-CceeeeeccH-
Confidence 344555566666666522 22355566555666788888888654 666664 778888999999987 3555442211
Q ss_pred CCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCc-chhHhhhcCCCCCCCccccc
Q 041114 559 SGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCT-AMEEIISAGKFVHTPEMMGN 626 (680)
Q Consensus 559 ~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~-~l~~i~~~~~~~~lp~L~~L 626 (680)
+...+|++|+++.+. ++.+| .+..++.|+.|.+.+.. ..+.||+.. |.+.+|+.+
T Consensus 265 ----------~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf 321 (1255)
T KOG0444|consen 265 ----------GEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVF 321 (1255)
T ss_pred ----------HHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHH
Confidence 334667777777743 55555 35667777776665532 133343322 444444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=1.4e-15 Score=182.99 Aligned_cols=168 Identities=22% Similarity=0.230 Sum_probs=93.9
Q ss_pred cccceEEEEeecccccccccCCCCccc------ccccc-ccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEe
Q 041114 375 EWETVRRLSLMQNQIKILSEAPTCPHL------HYEFK-MITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVN 447 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~-~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~ 447 (680)
...++++|.+.+|.+....+...+++| ++.+. .+|.. ++.+++|++|+|++|.-...+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 345666676666665432222223333 33333 34444 66777777777777433346677777777777777
Q ss_pred ccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 448 LEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 448 L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
+++|.....+|.+ ++++++|++|++++|. .+..+.++++|+.|++..+... ..++.....+++|+.|.++++.
T Consensus 195 L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 195 LASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT--GPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred ccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec--cccChhHhCCCCCCEEECcCCe
Confidence 7777333356665 7777777777777654 3445666677777766543322 1222222334466666666654
Q ss_pred CCCcccccccccCCCCCEEEEecc
Q 041114 524 DSKSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 524 ~~~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
-....+ ..+.++++|++|++++|
T Consensus 272 l~~~~p-~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 272 LSGPIP-PSIFSLQKLISLDLSDN 294 (968)
T ss_pred eeccCc-hhHhhccCcCEEECcCC
Confidence 333333 24556666666666654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=7.8e-15 Score=176.43 Aligned_cols=215 Identities=18% Similarity=0.114 Sum_probs=134.5
Q ss_pred cccceEEEEeecccccc-cccC-CCCccc------ccccc-ccchhhhccCCcceEEEccCCCCccccchhhhccCCCCE
Q 041114 375 EWETVRRLSLMQNQIKI-LSEA-PTCPHL------HYEFK-MITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKC 445 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~-l~~~-~~~~~L------~~~l~-~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~ 445 (680)
...++++|.+.+|.+.. +|.. ..+++| ++.+. .+|.. |.++++|++|+|++|.-...+|..++++++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 35678888888887753 3332 333444 44443 45555 788899999999886444578888889999999
Q ss_pred EeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEec
Q 041114 446 VNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIR 521 (680)
Q Consensus 446 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~ 521 (680)
|++++|.....+|.. ++++++|++|++++|. .+..+.++++|+.|.+..+.... .++.....+++|+.|++++
T Consensus 217 L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 217 IYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--PIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec--cCchhHhhccCcCEEECcC
Confidence 999888433467876 8889999999998875 44567788888888887443221 1232233345788888877
Q ss_pred cCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEE
Q 041114 522 FKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCL 600 (680)
Q Consensus 522 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L 600 (680)
|.-....+ ..+..+++|+.|+++++.....+ +..+ ..+++|+.|++++|.....+| .++.+++|+.|
T Consensus 294 n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~~----------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 294 NSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-PVAL----------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred CeeccCCC-hhHcCCCCCcEEECCCCccCCcC-ChhH----------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 75433444 25677778888887765433222 1111 345555555555554333333 24445555555
Q ss_pred eEecC
Q 041114 601 SLFDC 605 (680)
Q Consensus 601 ~l~~c 605 (680)
+++++
T Consensus 362 ~Ls~n 366 (968)
T PLN00113 362 DLSTN 366 (968)
T ss_pred ECCCC
Confidence 55543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=3.3e-16 Score=163.04 Aligned_cols=253 Identities=19% Similarity=0.192 Sum_probs=155.6
Q ss_pred ccccccceEEEEeecccccccccCCC-Cc-----cc-cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCC
Q 041114 372 EVKEWETVRRLSLMQNQIKILSEAPT-CP-----HL-HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLK 444 (680)
Q Consensus 372 ~~~~~~~~r~lsl~~~~~~~l~~~~~-~~-----~L-~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr 444 (680)
+...++.+..|.++.|.+.+.|.... .. +| ++.+..||...|.++.-|-+||||+ +.++.||+.+..|.+|+
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhh
Confidence 44566789999999999999887632 22 33 8889999999999999999999999 59999999999999999
Q ss_pred EEeccCCCCccccchhhhcCCCCCcEeeccCCc-----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEE
Q 041114 445 CVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVL 519 (680)
Q Consensus 445 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l 519 (680)
+|+|++|+ +....-.-+-.+++|++|.++++. .+..+..|.+|+.++++-+ ++..+|.-.-.+.+|+.|++
T Consensus 177 tL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 177 TLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheecc
Confidence 99999995 432211113456778888888753 4555666777777777643 33334433333446677777
Q ss_pred eccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCC-C----------cc----CCCCCCCCCCccEEeeeCCCC
Q 041114 520 IRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSG-T----------VL----KSPQPFVFCSLHKVTITFCPK 584 (680)
Q Consensus 520 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-~----------~l----~~~~~~~l~~L~~L~L~~c~~ 584 (680)
++++ +..+.. ..+...+|++|+++. +.+..+| +.++. + .+ .|..++.+.+|+.+...++ +
T Consensus 253 S~N~-iteL~~-~~~~W~~lEtLNlSr-NQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~ 327 (1255)
T KOG0444|consen 253 SGNK-ITELNM-TEGEWENLETLNLSR-NQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-K 327 (1255)
T ss_pred CcCc-eeeeec-cHHHHhhhhhhcccc-chhccch-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-c
Confidence 6655 333332 444555666666654 3333332 11110 0 00 1333455555555555543 2
Q ss_pred CCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 585 LKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 585 l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
+.-.| .++.++.|+.|.++. +.+-.+|... --+|.|+.|+++..|+|..-
T Consensus 328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cccCchhhhhhHHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCccCC
Confidence 44333 355566666666643 4444444322 23566666666666666543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.50 E-value=2.4e-15 Score=155.90 Aligned_cols=242 Identities=19% Similarity=0.258 Sum_probs=164.7
Q ss_pred cceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEe
Q 041114 377 ETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVN 447 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~ 447 (680)
.++.+|.+.+|.|..+... ..+.+| .+++..+|...|+++++|+.|||.. +.|+.. .-.+..|..|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhh
Confidence 4788888888888776432 223333 7777888887788888888888888 466655 35677788888888
Q ss_pred ccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 448 LEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 448 L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
|..| ++..+.++++-.|.++++|++..+. .-+.|-+|+.|+.|+++.+....+. .+......+|..|+|+++.
T Consensus 252 lqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 252 LQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccccc
Confidence 8887 6888888777788888888888765 2235667788888887754333222 2334555688888888776
Q ss_pred CCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCC---CCC-CCcCCCCCCCE
Q 041114 524 DSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKL---KGL-TFLVFAPNLKC 599 (680)
Q Consensus 524 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l---~~l-~~l~~l~~L~~ 599 (680)
+..++..++..+..|++|+++. +.+..+-...+ ..+++|++|+|+++..- ++- -.+..+|+|+.
T Consensus 329 -i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af----------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 329 -ITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAF----------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred -cccCChhHHHHHHHhhhhcccc-cchHHHHhhHH----------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 6666666778888888888875 34444422222 35688888888875411 111 12345899999
Q ss_pred EeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 600 LSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 600 L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
|.+.+ ++++.|+.. .|..|++|+.|++.+.+ +.++
T Consensus 397 L~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred eeecC-ceeeecchh-hhccCcccceecCCCCc-ceee
Confidence 99988 778888553 55778888888877654 4443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.42 E-value=8e-14 Score=144.78 Aligned_cols=244 Identities=19% Similarity=0.203 Sum_probs=123.6
Q ss_pred cceEEEEeecccccccccC-----CCCccc---cccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEe
Q 041114 377 ETVRRLSLMQNQIKILSEA-----PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVN 447 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~-----~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~ 447 (680)
.++.+|++.+|.|..+... +....+ .+.+..+|...|..=.++++|+|++ +.|+.+- ..+..|.+|-.|.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeee
Confidence 3577777777776654322 111111 4445555555455555666666666 3565554 3455666666666
Q ss_pred ccCCCCccccchhhhcCCCCCcEeeccCCc--ch--hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 448 LEWARDLVTIPLEVISNFSKLRVLRLFGTV--LA--KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 448 L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~--~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
|+.| .++.+|..++.+|.+|+.|++..+. .+ -.+++|.+|+.|.+..++...+.. ....-+.+++.|+|..++
T Consensus 204 LsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 204 LSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC--cceeeecccceeecccch
Confidence 6666 5666666545556666666666554 11 123445555555544333322221 001113356666665544
Q ss_pred CCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCC-------------
Q 041114 524 DSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTF------------- 590 (680)
Q Consensus 524 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~------------- 590 (680)
+..+...++-+++.|+.|+++. +.++.+.++. |...++|+.|+|+++. ++.++.
T Consensus 281 -l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~----------WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 281 -LQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDS----------WSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred -hhhhhcccccccchhhhhccch-hhhheeecch----------hhhcccceeEeccccc-cccCChhHHHHHHHhhhhc
Confidence 3444434566666666666664 3334332222 2344556666665533 333331
Q ss_pred -------------cCCCCCCCEEeEecCcchhHhhhc--CCCCCCCcccccCccccccCCCCCC
Q 041114 591 -------------LVFAPNLKCLSLFDCTAMEEIISA--GKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 591 -------------l~~l~~L~~L~l~~c~~l~~i~~~--~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
+..+.+|+.|++++ +.+...+.. ..|..||+|+.|.+.+ .+||.+|-
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecch
Confidence 23466777777766 333333221 1233478887777554 34555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=2.7e-14 Score=142.13 Aligned_cols=104 Identities=28% Similarity=0.496 Sum_probs=92.8
Q ss_pred cccc-ccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhcc
Q 041114 368 KEAP-EVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKAL 440 (680)
Q Consensus 368 ~~~~-~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L 440 (680)
..+| +....+++..+.+..|.+..+|+.+.|..| .+.++.+|....+.+.+|.+|||.. +.++++|.+++.|
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clL 274 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLL 274 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHh
Confidence 3444 445567888899999999999988999877 7788899999888999999999999 5999999999999
Q ss_pred CCCCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 441 VNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 441 ~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
.+|.+||+++| .+..+|.+ +|+| +|+.|-+.|
T Consensus 275 rsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leG 306 (565)
T KOG0472|consen 275 RSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEG 306 (565)
T ss_pred hhhhhhcccCC-ccccCCcc-cccc-eeeehhhcC
Confidence 99999999999 79999998 9999 999998887
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.24 E-value=8.7e-11 Score=132.54 Aligned_cols=147 Identities=18% Similarity=0.128 Sum_probs=83.8
Q ss_pred cccEEEecCCCcccccccccccceEEEEeecccccccccC-CCCccc---cccccccchhhhccCCcceEEEccCCCCcc
Q 041114 356 KENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA-PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIK 431 (680)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~-~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~ 431 (680)
+...+......+..+|... ..+++.|.+.+|.+..+|.. ..+..| ++.+..+|.. .++|+.|++++| .+.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~ 275 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLT 275 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc----ccccceeeccCC-chh
Confidence 3556666666777777533 24788888888888877654 222222 5666667642 356777777774 666
Q ss_pred ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCC-CCCceeEEEeccchhhhhhhhchhh
Q 041114 432 ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGL-KHLEELDFTLRCVHSLQILVSSNKL 510 (680)
Q Consensus 432 ~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L-~~L~~L~i~~~~~~~l~~l~~~~~l 510 (680)
.+|.. ..+|+.|++++| .++.+|.. +.+|+.|++++|. +..++.+ .+|+.|.+..+.... ++. +
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~L~~---LP~---l 340 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTS---LPT---L 340 (788)
T ss_pred hhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCc-cccCCCCcccccccccccCcccc---ccc---c
Confidence 66643 245666777777 57777652 3567777777653 2222221 234444444332222 222 2
Q ss_pred hccccEEEEeccC
Q 041114 511 QSCTRALVLIRFK 523 (680)
Q Consensus 511 ~~~L~~L~l~~~~ 523 (680)
..+|+.|+++++.
T Consensus 341 p~~Lq~LdLS~N~ 353 (788)
T PRK15387 341 PSGLQELSVSDNQ 353 (788)
T ss_pred ccccceEecCCCc
Confidence 2356666666654
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=3.4e-13 Score=119.33 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=69.4
Q ss_pred cccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEec
Q 041114 369 EAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNL 448 (680)
Q Consensus 369 ~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L 448 (680)
+++.....+++.++.+++|.+. .+|+. +..+.+|++|++++ +.|+++|.+|..|+.||+|++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~----------------~vppn-ia~l~nlevln~~n-nqie~lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT----------------VVPPN-IAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNV 86 (264)
T ss_pred hcccccchhhhhhhhcccCcee----------------ecCCc-HHHhhhhhhhhccc-chhhhcChhhhhchhhhheec
Confidence 3444455567777777777665 55666 77888889999988 588889988899999999988
Q ss_pred cCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 449 EWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 449 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.-| .+..+|.+ +|.+.-|++||+..+.
T Consensus 87 gmn-rl~~lprg-fgs~p~levldltynn 113 (264)
T KOG0617|consen 87 GMN-RLNILPRG-FGSFPALEVLDLTYNN 113 (264)
T ss_pred chh-hhhcCccc-cCCCchhhhhhccccc
Confidence 887 68888888 8888888888888653
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=2.8e-13 Score=134.99 Aligned_cols=226 Identities=17% Similarity=0.190 Sum_probs=130.4
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---c
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---L 478 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~ 478 (680)
.+.+..+|+. ++.+..+..|+.++ +++.++|+.++.+..|+.|+.+++ .+.++|++ |+.+..|+.|+..++. .
T Consensus 77 ~n~l~~lp~a-ig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~-i~~~~~l~dl~~~~N~i~sl 152 (565)
T KOG0472|consen 77 DNKLSQLPAA-IGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSN-ELKELPDS-IGRLLDLEDLDATNNQISSL 152 (565)
T ss_pred cchhhhCCHH-HHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhcccc-ceeecCch-HHHHhhhhhhhccccccccC
Confidence 4445555555 55556666666666 356666666666666666666665 45566665 6666666666555543 4
Q ss_pred hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccC
Q 041114 479 AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYT 558 (680)
Q Consensus 479 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (680)
++.+.++.+|..+.+..+ .+..++...-.++.|++|+...+- ++.+|. .++.+.+|+.|++.. +++..+
T Consensus 153 p~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~-~lg~l~~L~~LyL~~-Nki~~l----- 221 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNL-LETLPP-ELGGLESLELLYLRR-NKIRFL----- 221 (565)
T ss_pred chHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhh-hhcCCh-hhcchhhhHHHHhhh-cccccC-----
Confidence 455555555555544422 222333222224455655554332 444552 566666666666654 233322
Q ss_pred CCCccCCCCCCCCCCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCC
Q 041114 559 SGTVLKSPQPFVFCSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRK 636 (680)
Q Consensus 559 ~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~ 636 (680)
|+++.++.|..|++..+ +++.+|. ...+++|..|++.+ ++++++|.+. .-+.+|+.|++++ ..+..
T Consensus 222 -------Pef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSN-N~is~ 289 (565)
T KOG0472|consen 222 -------PEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSN-NDISS 289 (565)
T ss_pred -------CCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCchHH--HHhhhhhhhcccC-Ccccc
Confidence 33356677777777663 3555653 45788888888887 6788887653 4577788888887 55788
Q ss_pred CCCCCcc-ccCcceEEecc
Q 041114 637 LPLDSNS-ALEHKIAIRGE 654 (680)
Q Consensus 637 lP~~~~~-~l~~L~i~~~~ 654 (680)
+|....+ .|..|.+.+.+
T Consensus 290 Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 290 LPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred CCcccccceeeehhhcCCc
Confidence 8875554 34455554444
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=5.2e-12 Score=138.35 Aligned_cols=237 Identities=20% Similarity=0.243 Sum_probs=156.7
Q ss_pred cceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccC
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEW 450 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~ 450 (680)
.++++|..++|.+..+...+.-.++ .+.+..+| +++..+.+|..|+..+ +.+..+|..|.....|++|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh
Confidence 4677777777776643322222233 66777888 5689999999999999 58899999999999999999999
Q ss_pred CCCccccchhhhcCCCCCcEeeccCCcc---hhh-hcCCC-CCceeEEEecc-----------chhhhhhhhch------
Q 041114 451 ARDLVTIPLEVISNFSKLRVLRLFGTVL---AKE-LLGLK-HLEELDFTLRC-----------VHSLQILVSSN------ 508 (680)
Q Consensus 451 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~---~~~-l~~L~-~L~~L~i~~~~-----------~~~l~~l~~~~------ 508 (680)
| .++.+|+. .+++++|++|++..+.. +.. +.-+. .|+.|+.+.+. ...++.+.-..
T Consensus 297 n-el~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 N-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred h-hhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 9 79999996 78899999999987641 111 11111 12222222111 11111111111
Q ss_pred -----hhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 509 -----KLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 509 -----~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
....+|+.|+++++. +..+|.+.+.+++.|++|+++| +.++.++... ..+..|++|...++.
T Consensus 375 c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tv-----------a~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDTV-----------ANLGRLHTLRAHSNQ 441 (1081)
T ss_pred chhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHHH-----------HhhhhhHHHhhcCCc
Confidence 113478888888876 6777777888888888888887 4666664222 356677777776633
Q ss_pred CCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccccc
Q 041114 584 KLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAK 633 (680)
Q Consensus 584 ~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~ 633 (680)
+...|-+.++|.|+.++++ |+.++++..... -.-|+|+.|++++.++
T Consensus 442 -l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 442 -LLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -eeechhhhhcCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 5566677788888888886 477777754432 1126888888777664
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=2.1e-10 Score=130.17 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=62.2
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCC--CCccc---cccccccchhhhccCCcceEEEccCCCCccccc
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAP--TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL 434 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~--~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP 434 (680)
+...+.++..+|... ...++.|.+.+|.+..+|... .+..| ++.+..+|..+ ..+|+.|+|++| .+..+|
T Consensus 183 L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP 257 (754)
T PRK15370 183 LRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELP 257 (754)
T ss_pred EEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCC
Confidence 334444555555422 257888999888888765431 11111 45555666542 235666777763 666666
Q ss_pred hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 435 GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 435 ~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
..+. .+|++|++++| ++..+|.+ +. .+|++|++++|.
T Consensus 258 ~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 258 ERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNS 294 (754)
T ss_pred hhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCc
Confidence 6554 35667777666 56666664 43 366667666653
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=3.9e-11 Score=119.79 Aligned_cols=119 Identities=27% Similarity=0.363 Sum_probs=86.7
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCcccc-chh
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGE 436 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~ 436 (680)
..+...+.++.++|.. -......|.+..|.| +.+|++.|+.+++||.||||+ +.|+.+ |..
T Consensus 49 ~~VdCr~~GL~eVP~~-LP~~tveirLdqN~I----------------~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~A 110 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN-LPPETVEIRLDQNQI----------------SSIPPGAFKTLHRLRRLDLSK-NNISFIAPDA 110 (498)
T ss_pred ceEEccCCCcccCccc-CCCcceEEEeccCCc----------------ccCChhhccchhhhceecccc-cchhhcChHh
Confidence 4455556666666532 124555666665555 478888999999999999999 588876 577
Q ss_pred hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC----cchhhhcCCCCCceeEEE
Q 041114 437 LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT----VLAKELLGLKHLEELDFT 494 (680)
Q Consensus 437 i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~----~~~~~l~~L~~L~~L~i~ 494 (680)
+..|..|-.|-+.++.+|+.+|.+++++|..||.|.+.-+ .....+..|++|..|.+.
T Consensus 111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY 172 (498)
T ss_pred hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhccc
Confidence 8999998888777744899999999999999999988743 344455566666555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.02 E-value=4.3e-10 Score=127.73 Aligned_cols=223 Identities=16% Similarity=0.155 Sum_probs=151.0
Q ss_pred ceEEEEeecccccccccC--CCCccc---cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCC
Q 041114 378 TVRRLSLMQNQIKILSEA--PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWAR 452 (680)
Q Consensus 378 ~~r~lsl~~~~~~~l~~~--~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~ 452 (680)
+...+.+.++.+..+|.. .....| ++.+..+|..++ .+|++|++++| .++.+|.++. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N- 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN- 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC-
Confidence 456788888888777653 222233 778888988743 58999999994 8889997765 47999999999
Q ss_pred CccccchhhhcCCCCCcEeeccCCcchhhhcC--CCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccc
Q 041114 453 DLVTIPLEVISNFSKLRVLRLFGTVLAKELLG--LKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDV 530 (680)
Q Consensus 453 ~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~--L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~ 530 (680)
.+..+|.. +. .+|++|++++|. +..++. ..+|+.|+++.+... .++. .+..+|+.|+++++. +..+|.
T Consensus 252 ~L~~LP~~-l~--s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt---~LP~--~lp~sL~~L~Ls~N~-Lt~LP~ 321 (754)
T PRK15370 252 RITELPER-LP--SALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIR---TLPA--HLPSGITHLNVQSNS-LTALPE 321 (754)
T ss_pred ccCcCChh-Hh--CCCCEEECcCCc-cCccccccCCCCcEEECCCCccc---cCcc--cchhhHHHHHhcCCc-cccCCc
Confidence 79999986 54 589999998764 222221 147888888755433 3332 122467888888765 444442
Q ss_pred cccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhH
Q 041114 531 IALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEE 610 (680)
Q Consensus 531 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~ 610 (680)
.+ .++|+.|++++| .+..++. .-.++|+.|++++|. +..+|. ...++|+.|+|++| .+..
T Consensus 322 -~l--~~sL~~L~Ls~N-~Lt~LP~-------------~l~~sL~~L~Ls~N~-L~~LP~-~lp~~L~~LdLs~N-~Lt~ 381 (754)
T PRK15370 322 -TL--PPGLKTLEAGEN-ALTSLPA-------------SLPPELQVLDVSKNQ-ITVLPE-TLPPTITTLDVSRN-ALTN 381 (754)
T ss_pred -cc--cccceeccccCC-ccccCCh-------------hhcCcccEEECCCCC-CCcCCh-hhcCCcCEEECCCC-cCCC
Confidence 22 368999999875 3444321 123689999999976 555663 23479999999986 4666
Q ss_pred hhhcCCCCCCCcccccCccccccCCCCCCCCc
Q 041114 611 IISAGKFVHTPEMMGNTMDPCAKLRKLPLDSN 642 (680)
Q Consensus 611 i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~ 642 (680)
+|... .++|+.|++++| +|..+|..+.
T Consensus 382 LP~~l----~~sL~~LdLs~N-~L~~LP~sl~ 408 (754)
T PRK15370 382 LPENL----PAALQIMQASRN-NLVRLPESLP 408 (754)
T ss_pred CCHhH----HHHHHHHhhccC-CcccCchhHH
Confidence 75532 247889999985 5888886543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=7.8e-12 Score=110.77 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=114.1
Q ss_pred cCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---chhhhcCCCCCcee
Q 041114 415 FMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LAKELLGLKHLEEL 491 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~~L 491 (680)
.+.+...|-||+ +.+..+|..|..|.+|+.|++.+| +++++|.+ |++|++|+.|++.-+. .+..+++++.|+.|
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 578888999999 599999999999999999999999 89999998 9999999999998654 67788889999988
Q ss_pred EEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF 571 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l 571 (680)
++.-++.. -..+|.-...++.|+.|.+.++. .+.+| ..++++++|+.|.+....-++ + |..++.+
T Consensus 108 dltynnl~-e~~lpgnff~m~tlralyl~dnd-fe~lp-~dvg~lt~lqil~lrdndll~-l-----------pkeig~l 172 (264)
T KOG0617|consen 108 DLTYNNLN-ENSLPGNFFYMTTLRALYLGDND-FEILP-PDVGKLTNLQILSLRDNDLLS-L-----------PKEIGDL 172 (264)
T ss_pred hccccccc-cccCCcchhHHHHHHHHHhcCCC-cccCC-hhhhhhcceeEEeeccCchhh-C-----------cHHHHHH
Confidence 88754432 12234333445566677776654 45555 367777788877777643332 2 1222567
Q ss_pred CCccEEeeeCCCCCCCCC
Q 041114 572 CSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 572 ~~L~~L~L~~c~~l~~l~ 589 (680)
..|+.|.+.++. ++.+|
T Consensus 173 t~lrelhiqgnr-l~vlp 189 (264)
T KOG0617|consen 173 TRLRELHIQGNR-LTVLP 189 (264)
T ss_pred HHHHHHhcccce-eeecC
Confidence 777777777744 55554
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=5.5e-10 Score=128.81 Aligned_cols=239 Identities=23% Similarity=0.253 Sum_probs=146.7
Q ss_pred cccccccchhhhccCCcceEEEccCCCC-ccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETN-IKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-- 477 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~-i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-- 477 (680)
++.+..++.. ...+.|+.|-+.+|.. +..++.. +..+++||+|||++|..+..+|.+ |+.|-+||+|+++++.
T Consensus 532 ~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 532 NNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGIS 608 (889)
T ss_pred ccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCcc
Confidence 6666666664 3456899999998542 7777744 778999999999999999999998 9999999999999976
Q ss_pred -chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC-CCCcccccccccCCCCCEEEEeccCCcceeec
Q 041114 478 -LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK-DSKSIDVIALARLKHLSTLHFSKCEELEEWKT 555 (680)
Q Consensus 478 -~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~ 555 (680)
.|..+++|+.|..|++...+ .+..++.....+.+|+.|.+.... .........+..+++|+.|.+..+.. . +..
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~--~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e 684 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTG--RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-L-LLE 684 (889)
T ss_pred ccchHHHHHHhhheecccccc--ccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-H-hHh
Confidence 57888999999999987443 233334444546789999987654 22233334566777888777754433 1 101
Q ss_pred ccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhc---CCCCC-CCcccccCcccc
Q 041114 556 DYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISA---GKFVH-TPEMMGNTMDPC 631 (680)
Q Consensus 556 ~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~---~~~~~-lp~L~~L~i~~C 631 (680)
+..... .-.+..+.+.+.+|...+..+.++.+++|+.|.|.+|...+..... ..... ||+|..+.+.+|
T Consensus 685 ~l~~~~-------~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 685 DLLGMT-------RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred hhhhhH-------HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 111000 0011122333333443444445666777777777776654332211 00111 455666666666
Q ss_pred ccCCCCCCC-CccccCcceEEecc
Q 041114 632 AKLRKLPLD-SNSALEHKIAIRGE 654 (680)
Q Consensus 632 ~~L~~lP~~-~~~~l~~L~i~~~~ 654 (680)
..++.+-.. +..+|+.|.+..|.
T Consensus 758 ~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 758 HMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred ccccccchhhccCcccEEEEeccc
Confidence 666654321 22235556665554
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=2.2e-09 Score=121.40 Aligned_cols=225 Identities=19% Similarity=0.168 Sum_probs=135.8
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCC-CCccc---cccccccchhhhccCCcceEEEccCCCCccccch
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAP-TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG 435 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~-~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~ 435 (680)
+......+..+|.. .++++.|.+.+|.+..+|..+ .+..| .+.+..+|.. +..|+.|++++| .+..+|.
T Consensus 227 L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l----p~~L~~L~Ls~N-~Lt~LP~ 299 (788)
T PRK15387 227 LVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL----PSGLCKLWIFGN-QLTSLPV 299 (788)
T ss_pred EEccCCcCCCCCCC--CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhc----hhhcCEEECcCC-ccccccc
Confidence 34444555556532 468999999999998887542 22233 5667777753 356888999994 8888885
Q ss_pred hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCC-CCCceeEEEeccchhhhhhhhchhhhccc
Q 041114 436 ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGL-KHLEELDFTLRCVHSLQILVSSNKLQSCT 514 (680)
Q Consensus 436 ~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L-~~L~~L~i~~~~~~~l~~l~~~~~l~~~L 514 (680)
. +++|++|++++| .+..+|.. . .+|+.|++++|. +..++.+ .+|+.|+++.+.... +|.. ..+|
T Consensus 300 ~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~---LP~l---p~~L 364 (788)
T PRK15387 300 L---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLAS---LPTL---PSEL 364 (788)
T ss_pred c---ccccceeECCCC-ccccCCCC-c---ccccccccccCc-cccccccccccceEecCCCccCC---CCCC---Cccc
Confidence 3 467899999998 78888762 3 346667777654 2334333 367777776544333 3322 2366
Q ss_pred cEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCC
Q 041114 515 RALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFA 594 (680)
Q Consensus 515 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l 594 (680)
..|.++++. +..+|. + ..+|+.|+++++ .+..++. .+++|+.|+++++. +..+|. .+
T Consensus 365 ~~L~Ls~N~-L~~LP~--l--~~~L~~LdLs~N-~Lt~LP~--------------l~s~L~~LdLS~N~-LssIP~--l~ 421 (788)
T PRK15387 365 YKLWAYNNR-LTSLPA--L--PSGLKELIVSGN-RLTSLPV--------------LPSELKELMVSGNR-LTSLPM--LP 421 (788)
T ss_pred ceehhhccc-cccCcc--c--ccccceEEecCC-cccCCCC--------------cccCCCEEEccCCc-CCCCCc--ch
Confidence 677776654 444431 1 246777777653 3443221 12467777777754 455553 23
Q ss_pred CCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 595 PNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 595 ~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
.+|+.|++++ +.+..+|.. ++.+++|+.|++++++
T Consensus 422 ~~L~~L~Ls~-NqLt~LP~s--l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYR-NQLTRLPES--LIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhcc-CcccccChH--HhhccCCCeEECCCCC
Confidence 4666677766 445666543 2556677766666654
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=2.3e-09 Score=118.12 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=70.6
Q ss_pred cceEEEEeecccccccccC-CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEecc
Q 041114 377 ETVRRLSLMQNQIKILSEA-PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLE 449 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~-~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~ 449 (680)
-++.+|.+++|.+...|.. ...++| ++.+..+|.+ .+++++|++|.|.+ +.+..+|.++..+++|++|+++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheecc-chhhcCchhHHhhhcccccccc
Confidence 3588888888888776544 222222 6666677755 67777777777777 4777777777777777777777
Q ss_pred CCCCccccchhhhcCCCCCcEeeccCCcchhhhcC
Q 041114 450 WARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLG 484 (680)
Q Consensus 450 ~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~ 484 (680)
+| ....+|. +|..++.+..+.++++..+..++.
T Consensus 123 ~N-~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 123 FN-HFGPIPL-VIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hh-ccCCCch-hHHhhhHHHHHhhhcchhhhhhcc
Confidence 77 5777777 377777777777776643333333
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-08 Score=102.72 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=91.6
Q ss_pred EEecCCCccccccc--ccccceEEEEeecccccccccC--CCCccc-------cccccccchhhhccCCcceEEEccCCC
Q 041114 360 LVCAGRGLKEAPEV--KEWETVRRLSLMQNQIKILSEA--PTCPHL-------HYEFKMITDGFFQFMPLLKVLNMSRET 428 (680)
Q Consensus 360 ~~~~~~~~~~~~~~--~~~~~~r~lsl~~~~~~~l~~~--~~~~~L-------~~~l~~lp~~~~~~l~~Lr~LdL~~~~ 428 (680)
+..+..++..+|+. ...+++|+|++++|.|+.+.+. ...+++ ++.++.+|.+.|.++..|+.|.+.-|
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan- 150 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN- 150 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-
Confidence 34455667777753 4568999999999999987544 333333 58999999999999999999999984
Q ss_pred Cccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 429 NIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 429 ~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
.+..++ ..+..|++|+.|.+..| .+..++.+++..+.+++++.+-.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhc
Confidence 787776 66889999999999999 79999987688899999887764
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.59 E-value=3.3e-08 Score=103.27 Aligned_cols=185 Identities=20% Similarity=0.132 Sum_probs=95.8
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCC---CCEEeccCCCCcc-----ccchhhhcCC-CCCcEeeccCCcc-----
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVN---LKCVNLEWARDLV-----TIPLEVISNF-SKLRVLRLFGTVL----- 478 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~---Lr~L~L~~~~~l~-----~lP~~~i~~L-~~L~~L~l~~~~~----- 478 (680)
+..+++|+.|++++|......+..+..+.+ |++|++++| .+. .++.. +..+ .+|+.|++++|..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH
Confidence 566778888888875322345555665555 888888877 454 23333 5566 7788888887752
Q ss_pred ---hhhhcCCCCCceeEEEeccchh--hhhhhhchhhhccccEEEEeccCCCCcccc----cccccCCCCCEEEEeccCC
Q 041114 479 ---AKELLGLKHLEELDFTLRCVHS--LQILVSSNKLQSCTRALVLIRFKDSKSIDV----IALARLKHLSTLHFSKCEE 549 (680)
Q Consensus 479 ---~~~l~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 549 (680)
...+..+++|+.|++..++... +..+.......++|+.|++++|. +..... ..+..+++|+.|++++|.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~- 232 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN- 232 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-
Confidence 2234555667777766443331 11222111122467777777664 221111 134556677777777653
Q ss_pred cceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCC----CC-CCcCCCCCCCEEeEecCc
Q 041114 550 LEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLK----GL-TFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 550 l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~----~l-~~l~~l~~L~~L~l~~c~ 606 (680)
+.......+.. ..+ ...+.|++|++++|.... .+ ..+..+++|++|+++++.
T Consensus 233 l~~~~~~~l~~---~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 233 LTDAGAAALAS---ALL--SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CchHHHHHHHH---HHh--ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 22111111100 000 113567777777764210 00 123345677777776643
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=3e-08 Score=103.53 Aligned_cols=205 Identities=18% Similarity=0.093 Sum_probs=104.8
Q ss_pred hccCCcceEEEccCCCCcc-------ccchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCC---CcEeeccCCcch--
Q 041114 413 FQFMPLLKVLNMSRETNIK-------ELLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSK---LRVLRLFGTVLA-- 479 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~-------~lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~---L~~L~l~~~~~~-- 479 (680)
+...+.|+.|+++++ .+. .++..+..+++|++|++++| .+. ..+.. +..+.+ |++|++++|..-
T Consensus 47 l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~ 123 (319)
T cd00116 47 LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGV-LESLLRSSSLQELKLNNNGLGDR 123 (319)
T ss_pred HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHH-HHHHhccCcccEEEeeCCccchH
Confidence 556667777877774 333 23455667778888888877 444 33332 544444 888888776522
Q ss_pred ------hhhcCC-CCCceeEEEeccch--hhhhhhhchhhhccccEEEEeccCCCCcccc----cccccCCCCCEEEEec
Q 041114 480 ------KELLGL-KHLEELDFTLRCVH--SLQILVSSNKLQSCTRALVLIRFKDSKSIDV----IALARLKHLSTLHFSK 546 (680)
Q Consensus 480 ------~~l~~L-~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~ 546 (680)
..+..+ ++|+.|++..+... ....+......+.+|+.|+++++. +..... ..+..+++|+.|++++
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccC
Confidence 234455 67777777644433 122222222333467777777654 221110 1334456777777776
Q ss_pred cCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCC--CCc-----CCCCCCCEEeEecCcch----hHhhhcC
Q 041114 547 CEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGL--TFL-----VFAPNLKCLSLFDCTAM----EEIISAG 615 (680)
Q Consensus 547 ~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l--~~l-----~~l~~L~~L~l~~c~~l----~~i~~~~ 615 (680)
|.. .......+. ..+..+++|++|++++|. +... ..+ ...+.|++|++++|..- ..+..
T Consensus 203 n~i-~~~~~~~l~------~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-- 272 (319)
T cd00116 203 NGL-TDEGASALA------ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE-- 272 (319)
T ss_pred Ccc-ChHHHHHHH------HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--
Confidence 532 211111100 011345677777777764 2221 111 12467777777776421 11111
Q ss_pred CCCCCCcccccCcccc
Q 041114 616 KFVHTPEMMGNTMDPC 631 (680)
Q Consensus 616 ~~~~lp~L~~L~i~~C 631 (680)
....+++|+.++++++
T Consensus 273 ~~~~~~~L~~l~l~~N 288 (319)
T cd00116 273 VLAEKESLLELDLRGN 288 (319)
T ss_pred HHhcCCCccEEECCCC
Confidence 1133456666666553
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.6e-08 Score=98.46 Aligned_cols=204 Identities=22% Similarity=0.185 Sum_probs=130.4
Q ss_pred ccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCC--CCccccchhhhccCCCCEEeccCCCC
Q 041114 376 WETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRE--TNIKELLGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~--~~i~~lP~~i~~L~~Lr~L~L~~~~~ 453 (680)
.+++|.+++.+..+...+.. +....|+++|.||||+| ++...+-+-+..|++|+.|+|+.| .
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~---------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-r 183 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE---------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-R 183 (505)
T ss_pred HHhhhheeecCccccccchh---------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-c
Confidence 46889999988777644210 23567999999999995 233344455779999999999998 5
Q ss_pred ccccchh-hhcCCCCCcEeeccCCcc-----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCc
Q 041114 454 LVTIPLE-VISNFSKLRVLRLFGTVL-----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKS 527 (680)
Q Consensus 454 l~~lP~~-~i~~L~~L~~L~l~~~~~-----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~ 527 (680)
+...-.+ .-..+.+|+.|.++.|.. ..-+...+.|..|.+..+. .+-.-......+..|+.|+|+++.....
T Consensus 184 l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 184 LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCccccc
Confidence 5543222 123577899999998862 2233456777777776543 1111112223455788999998876555
Q ss_pred ccccccccCCCCCEEEEeccCCccee-ecccCCCCccCCCCCCCCCCccEEeeeCCCC--CCCCCCcCCCCCCCEEeEe
Q 041114 528 IDVIALARLKHLSTLHFSKCEELEEW-KTDYTSGTVLKSPQPFVFCSLHKVTITFCPK--LKGLTFLVFAPNLKCLSLF 603 (680)
Q Consensus 528 ~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~--l~~l~~l~~l~~L~~L~l~ 603 (680)
-....++.++.|+.|+++.| ++.++ .++... ......|++|++|++..++. +..+..+..+++|+.|.+.
T Consensus 262 ~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s-----~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSST-GIASIAEPDVES-----LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccccccchhhhhcccc-CcchhcCCCccc-----hhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 54447788899999998875 33333 111100 00125789999999998764 4444445567777777654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=1.6e-07 Score=87.25 Aligned_cols=96 Identities=27% Similarity=0.349 Sum_probs=32.1
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhc-cCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCcc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQ-FMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLV 455 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~-~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~ 455 (680)
.+.|.|++.++.+..+.. ++ .+.+|++|||++ +.|++++ ++..|++|+.|++++| .|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~------------------L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N-~I~ 77 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN------------------LGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNN-RIS 77 (175)
T ss_dssp -----------------S--------------------TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS----
T ss_pred cccccccccccccccccc------------------hhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCC-CCC
Confidence 467888888888765421 33 467888899998 4888875 6778888999999988 788
Q ss_pred ccchhhh-cCCCCCcEeeccCCc-----chhhhcCCCCCceeEEE
Q 041114 456 TIPLEVI-SNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFT 494 (680)
Q Consensus 456 ~lP~~~i-~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~ 494 (680)
+++.. + ..+++|++|+++++. .+..+..+++|+.|++.
T Consensus 78 ~i~~~-l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 78 SISEG-LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp S-CHH-HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred ccccc-hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 88765 4 468888888888764 23334444555555544
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.43 E-value=7.2e-08 Score=93.32 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=103.1
Q ss_pred hhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCC
Q 041114 481 ELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSG 560 (680)
Q Consensus 481 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 560 (680)
.+..-+.|..++++.+ .+..+-.+.++.+.++.|+++.+. +.... ++..+++|+.|++++. .+.++ ..|-
T Consensus 279 ~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~-i~~v~--nLa~L~~L~~LDLS~N-~Ls~~-~Gwh-- 348 (490)
T KOG1259|consen 279 SADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR-IRTVQ--NLAELPQLQLLDLSGN-LLAEC-VGWH-- 348 (490)
T ss_pred ecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccc-eeeeh--hhhhcccceEeecccc-hhHhh-hhhH--
Confidence 3444566777777744 455556667778899999999876 33333 6889999999999973 45433 3333
Q ss_pred CccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 561 TVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 561 ~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
..+-|+++|.|.++ .+..+..++.+-+|..|++++ ++++++-.-...|++|+|+.+.+.+.| |..+|.
T Consensus 349 --------~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 349 --------LKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred --------hhhcCEeeeehhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 46789999999984 478888899999999999998 667777555566999999999988877 555553
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.2e-08 Score=96.89 Aligned_cols=177 Identities=24% Similarity=0.266 Sum_probs=121.6
Q ss_pred CcceEEEccCCCCcc--ccchhhhccCCCCEEeccCCCCccc-cchhhhcCCCCCcEeeccCCcchhh------hcCCCC
Q 041114 417 PLLKVLNMSRETNIK--ELLGELKALVNLKCVNLEWARDLVT-IPLEVISNFSKLRVLRLFGTVLAKE------LLGLKH 487 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~l~~-lP~~~i~~L~~L~~L~l~~~~~~~~------l~~L~~ 487 (680)
..|++||||. +.|+ .+..-+..+.+|+.|.|.+. .+.. +-.. |.+=.+|+.|++++|+++.+ +.+++.
T Consensus 185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhh
Confidence 3588999998 6775 45555678888999999988 4543 3333 77778999999999986654 467888
Q ss_pred CceeEEEeccchhhhhhhhchhhhccccEEEEeccCC-CCccccccc-ccCCCCCEEEEeccCCcceeecccCCCCccCC
Q 041114 488 LEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKD-SKSIDVIAL-ARLKHLSTLHFSKCEELEEWKTDYTSGTVLKS 565 (680)
Q Consensus 488 L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 565 (680)
|..|++++++...-.--........+|..|+++++.. +....++.+ ..+++|.+|++++|..++.-....+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~------- 334 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF------- 334 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-------
Confidence 8888888776543221111223345788999998853 222222222 4688999999999888774222222
Q ss_pred CCCCCCCCccEEeeeCCCCCCC--CCCcCCCCCCCEEeEecCc
Q 041114 566 PQPFVFCSLHKVTITFCPKLKG--LTFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 566 ~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c~ 606 (680)
..|+.|++|.++.|..+.- +-.+...|+|.+|++.+|-
T Consensus 335 ---~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 ---FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 5789999999999985421 1135778999999999873
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=2.8e-08 Score=104.12 Aligned_cols=185 Identities=19% Similarity=0.179 Sum_probs=129.0
Q ss_pred ceEEEEeecccccccccC-CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccC
Q 041114 378 TVRRLSLMQNQIKILSEA-PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEW 450 (680)
Q Consensus 378 ~~r~lsl~~~~~~~l~~~-~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~ 450 (680)
......++.|.+.++|.. ..|..| .+.+..+|.. +..+..|.+|||+. +.+..+|..++.|+ |+.|-+++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec
Confidence 445556666777766654 222222 7778888887 78899999999999 59999999999988 99999999
Q ss_pred CCCccccchhhhcCCCCCcEeeccCCc---chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCc
Q 041114 451 ARDLVTIPLEVISNFSKLRVLRLFGTV---LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKS 527 (680)
Q Consensus 451 ~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~ 527 (680)
| +++.+|.+ |+.+..|..||++.|. .+..+..|..|+.|.+.-+... .++.-..- -.|..|++++++ +..
T Consensus 153 N-kl~~lp~~-ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~---~lp~El~~-LpLi~lDfScNk-is~ 225 (722)
T KOG0532|consen 153 N-KLTSLPEE-IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE---DLPEELCS-LPLIRLDFSCNK-ISY 225 (722)
T ss_pred C-ccccCCcc-cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh---hCCHHHhC-CceeeeecccCc-eee
Confidence 9 89999998 9988899999999886 5667777888887777644322 22211111 157788887655 677
Q ss_pred ccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCC
Q 041114 528 IDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFC 582 (680)
Q Consensus 528 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c 582 (680)
+|. .+.+|++|++|.|.+++ +.+ ++..++.. +...=-++|+..-|
T Consensus 226 iPv-~fr~m~~Lq~l~LenNP-LqS-PPAqIC~k-------GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPV-DFRKMRHLQVLQLENNP-LQS-PPAQICEK-------GKVHIFKYLSTQAC 270 (722)
T ss_pred cch-hhhhhhhheeeeeccCC-CCC-ChHHHHhc-------cceeeeeeecchhc
Confidence 776 78888888888887543 332 22222211 33444566777766
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=3.2e-08 Score=103.72 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=50.2
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---c
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---L 478 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~ 478 (680)
.+.+..+|.. +.. --|++|-+++ ++++.+|+.|+-+.+|..||.+.| ++..+|.. ++.|.+|+.|+++.+. .
T Consensus 130 ~NqlS~lp~~-lC~-lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 130 SNQLSHLPDG-LCD-LPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred cchhhcCChh-hhc-CcceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence 3444444444 221 2245555554 355555555554455555555555 45555554 5555555555554443 3
Q ss_pred hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 479 AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 479 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
+.++..|+ |..|+++ +..+..+|-....++.|+.|-|.+++
T Consensus 205 p~El~~Lp-Li~lDfS---cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 205 PEELCSLP-LIRLDFS---CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CHHHhCCc-eeeeecc---cCceeecchhhhhhhhheeeeeccCC
Confidence 33333222 3334443 22233333333334455555554444
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=5.3e-07 Score=68.59 Aligned_cols=59 Identities=31% Similarity=0.494 Sum_probs=52.9
Q ss_pred CcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 417 PLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
++|++|++++| .+..+| ..+..+++|++|++++| .++.+|++++..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 47899999995 999999 56889999999999999 7999998878999999999999874
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.8e-07 Score=95.31 Aligned_cols=199 Identities=13% Similarity=0.071 Sum_probs=124.6
Q ss_pred ccCCcceEEEccCCCCccccch--hhhccCCCCEEeccCCCCccccch--hhhcCCCCCcEeeccCCcchhhh-----cC
Q 041114 414 QFMPLLKVLNMSRETNIKELLG--ELKALVNLKCVNLEWARDLVTIPL--EVISNFSKLRVLRLFGTVLAKEL-----LG 484 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~lP~--~i~~L~~Lr~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~~~~l-----~~ 484 (680)
+++++||...|.+ +.+...+. -...|++++.|||++| -+...-+ +.+..|++|+.|+++.+...--. ..
T Consensus 118 sn~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecC-ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 5688899999998 58877773 5778999999999998 4554322 13568999999999987522111 14
Q ss_pred CCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccC
Q 041114 485 LKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLK 564 (680)
Q Consensus 485 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~ 564 (680)
+++|..|.+..++.+ -..+.......++|..|.+..+++.-... .+..-+..|++|+|++.+.+. ++.
T Consensus 196 l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~-~~~--------- 263 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLID-FDQ--------- 263 (505)
T ss_pred hhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceec-chhhhhhHHhhccccCCcccc-ccc---------
Confidence 677888888766655 33333333445688888888775322222 134456788888998765543 211
Q ss_pred CCCCCCCCCccEEeeeCCCC--CCCCCC-----cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccC
Q 041114 565 SPQPFVFCSLHKVTITFCPK--LKGLTF-----LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNT 627 (680)
Q Consensus 565 ~~~~~~l~~L~~L~L~~c~~--l~~l~~-----l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~ 627 (680)
.+..+.|+.|..|+++.|.. +..++. ...+|+|++|++.. +.+.++..-.....+++|+.|.
T Consensus 264 ~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhh
Confidence 12226788888888888652 222222 34689999999887 4444443322222345554443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=4e-07 Score=88.30 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=83.3
Q ss_pred CCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEe
Q 041114 416 MPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTL 495 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~ 495 (680)
...|..||||+ +.|+.+-+++.-++.+|.|++++| .+..+.. +..|++|+.||++++.
T Consensus 283 Wq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N~------------------ 340 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGNL------------------ 340 (490)
T ss_pred Hhhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccch------------------
Confidence 46788899999 588888889888999999999998 6877765 7788888888888763
Q ss_pred ccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCcc
Q 041114 496 RCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLH 575 (680)
Q Consensus 496 ~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~ 575 (680)
+..+......+.|++.|.+..+. ++.+ +.+.++-+|..|++++. .++.+. .. -+++++|+|+
T Consensus 341 -----Ls~~~Gwh~KLGNIKtL~La~N~-iE~L--SGL~KLYSLvnLDl~~N-~Ie~ld--eV-------~~IG~LPCLE 402 (490)
T KOG1259|consen 341 -----LAECVGWHLKLGNIKTLKLAQNK-IETL--SGLRKLYSLVNLDLSSN-QIEELD--EV-------NHIGNLPCLE 402 (490)
T ss_pred -----hHhhhhhHhhhcCEeeeehhhhh-Hhhh--hhhHhhhhheecccccc-chhhHH--Hh-------cccccccHHH
Confidence 11111112223456666666543 3332 35666667777777653 333321 11 1126677777
Q ss_pred EEeeeCCC
Q 041114 576 KVTITFCP 583 (680)
Q Consensus 576 ~L~L~~c~ 583 (680)
.|.|.+++
T Consensus 403 ~l~L~~NP 410 (490)
T KOG1259|consen 403 TLRLTGNP 410 (490)
T ss_pred HHhhcCCC
Confidence 77777766
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.11 E-value=3.1e-06 Score=78.67 Aligned_cols=118 Identities=27% Similarity=0.312 Sum_probs=47.2
Q ss_pred ccEEEecCCCcccccccc-cccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch
Q 041114 357 ENFLVCAGRGLKEAPEVK-EWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG 435 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~-~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~ 435 (680)
..-+...+..+..+.... ...+++.|++++|.+..++. +..+++|++|++++ +.|.++++
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~------------------l~~L~~L~~L~L~~-N~I~~i~~ 81 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG------------------LPGLPRLKTLDLSN-NRISSISE 81 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT----------------------TT--EEE--S-S---S-CH
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccC------------------ccChhhhhhcccCC-CCCCcccc
Confidence 344555566666565444 35789999999999875522 66789999999999 59999977
Q ss_pred hhh-ccCCCCEEeccCCCCccccch-hhhcCCCCCcEeeccCCcch-------hhhcCCCCCceeEEE
Q 041114 436 ELK-ALVNLKCVNLEWARDLVTIPL-EVISNFSKLRVLRLFGTVLA-------KELLGLKHLEELDFT 494 (680)
Q Consensus 436 ~i~-~L~~Lr~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~~~-------~~l~~L~~L~~L~i~ 494 (680)
.+. .+++|+.|++++| .|..+.. ..++.+++|++|++.+|..- .-+..+++|+.|+-.
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 664 6999999999999 6876543 12678899999999987521 223456667666644
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.11 E-value=2.7e-06 Score=91.66 Aligned_cols=171 Identities=24% Similarity=0.252 Sum_probs=105.0
Q ss_pred ccCCcceEEEccCCCCccccchhhhccC-CCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---chhhhcCCCCCc
Q 041114 414 QFMPLLKVLNMSRETNIKELLGELKALV-NLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LAKELLGLKHLE 489 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~lP~~i~~L~-~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~ 489 (680)
..+..+..|++.+ ..+.++|..++.+. +|+.|+++++ .+..+|.. ++.+++|+.|+++.|. .+.....+..|+
T Consensus 113 ~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 3456677777777 47777777777774 7777777777 67777654 7777777777777764 222222566666
Q ss_pred eeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCC
Q 041114 490 ELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPF 569 (680)
Q Consensus 490 ~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 569 (680)
.|+++.+. +..++........|..|.+.++....... .+..++++..|.+.+. .+..+ +... +
T Consensus 190 ~L~ls~N~---i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n-~~~~~-~~~~----------~ 252 (394)
T COG4886 190 NLDLSGNK---ISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNN-KLEDL-PESI----------G 252 (394)
T ss_pred heeccCCc---cccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCc-eeeec-cchh----------c
Confidence 66666333 33333333344457777777664222222 5566666666665432 22211 2222 4
Q ss_pred CCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecC
Q 041114 570 VFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDC 605 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c 605 (680)
.+++|+.|+++++. +..++.++.+.+|+.|++++.
T Consensus 253 ~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 253 NLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cccccceecccccc-ccccccccccCccCEEeccCc
Confidence 56778888888754 566666778888888888773
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.6e-05 Score=83.03 Aligned_cols=161 Identities=15% Similarity=0.146 Sum_probs=99.9
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeE
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELD 492 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~ 492 (680)
+..+++++.|++++| .++.+|. -..+|+.|.+++|..++.+|.. + ..+|++|++++|..+..++ .+|+.|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP--~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP--ESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc--cccceEE
Confidence 345688999999996 8999982 2346999999999889999875 5 3689999999986555443 4577777
Q ss_pred EEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccc--cCCCCCEEEEeccCCcceeecccCCCCccCCCCCCC
Q 041114 493 FTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALA--RLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFV 570 (680)
Q Consensus 493 i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~ 570 (680)
+..+.+..+..+ .++|+.|.+.++...... .+. -.++|+.|.+++|..+. + +. .-
T Consensus 119 L~~n~~~~L~~L------PssLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i~-L-P~------------~L 175 (426)
T PRK15386 119 IKGSATDSIKNV------PNGLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNII-L-PE------------KL 175 (426)
T ss_pred eCCCCCcccccC------cchHhheecccccccccc---ccccccCCcccEEEecCCCccc-C-cc------------cc
Confidence 654333333333 336777777543211111 111 12689999998877543 1 11 12
Q ss_pred CCCccEEeeeCCCCCCC--CCCcCCC-CCCCEEeEecCcch
Q 041114 571 FCSLHKVTITFCPKLKG--LTFLVFA-PNLKCLSLFDCTAM 608 (680)
Q Consensus 571 l~~L~~L~L~~c~~l~~--l~~l~~l-~~L~~L~l~~c~~l 608 (680)
..+|+.|.++.+. +.. ++ ...+ +++ .|.+.+|-.+
T Consensus 176 P~SLk~L~ls~n~-~~sLeI~-~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 176 PESLQSITLHIEQ-KTTWNIS-FEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cccCcEEEecccc-cccccCc-cccccccc-Eechhhhccc
Confidence 2688888887643 111 11 1122 455 7777776443
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=7e-06 Score=57.32 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=34.2
Q ss_pred CcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccch
Q 041114 417 PLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPL 459 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~ 459 (680)
++|++|++++ +.|+++|..+++|++|++|++++| .++++|.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4789999999 599999988999999999999999 7888775
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=4.9e-07 Score=91.78 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=135.4
Q ss_pred ccCCcceEEEccCCCCccccc-h-hhhccCCCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCCcch--hhhcC---
Q 041114 414 QFMPLLKVLNMSRETNIKELL-G-ELKALVNLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGTVLA--KELLG--- 484 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~lP-~-~i~~L~~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~--~~l~~--- 484 (680)
..+++|++|+|..|.+++..- + -...+++|+||+++.|+.++. +-. ......+|+.+-..||... +.+..
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccHHHHHHHhc
Confidence 345666666666665555432 2 233556666666666655543 111 1233444555555554311 11110
Q ss_pred -CCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccccccc-ccCCCCCEEEEeccCCcceeecccCCCCc
Q 041114 485 -LKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIAL-ARLKHLSTLHFSKCEELEEWKTDYTSGTV 562 (680)
Q Consensus 485 -L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (680)
...+..+++.-.+.-.-..+.........|+.|..+++.+.....+..+ .+..+|+.|.+++|..+.......+.
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--- 342 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--- 342 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh---
Confidence 1111111111000001111222223345677777777776555444333 34578888888888776654444333
Q ss_pred cCCCCCCCCCCccEEeeeCCCCCCCCC---CcCCCCCCCEEeEecCcchhHh---hhcCCCCCCCcccccCccccccCCC
Q 041114 563 LKSPQPFVFCSLHKVTITFCPKLKGLT---FLVFAPNLKCLSLFDCTAMEEI---ISAGKFVHTPEMMGNTMDPCAKLRK 636 (680)
Q Consensus 563 l~~~~~~~l~~L~~L~L~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~i---~~~~~~~~lp~L~~L~i~~C~~L~~ 636 (680)
.+.+.|+.+++..|....... .-.++|.|+.|.++.|..+.+- ........+..|+.+.+.+||.+.+
T Consensus 343 ------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 343 ------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 456778888888877554431 1246899999999988765544 0111123477888899999998765
Q ss_pred CCCC---CccccCcceEEeccccccc---cCccC--chhhhccccCcccc
Q 041114 637 LPLD---SNSALEHKIAIRGEAGWWG---CLQWE--NEATQIAFLPCFKT 678 (680)
Q Consensus 637 lP~~---~~~~l~~L~i~~~~~~~~~---~l~w~--~~~~~~~~~~~~~~ 678 (680)
--+. ..++|+.+.+++|..-.-+ ++.=. +..+.++|-|.-++
T Consensus 417 ~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 417 ATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPP 466 (483)
T ss_pred HHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCc
Confidence 3221 1126888999999743333 33222 22444555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=7.2e-06 Score=62.28 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=48.8
Q ss_pred ceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCC
Q 041114 378 TVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWA 451 (680)
Q Consensus 378 ~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~ 451 (680)
+++.+.+.+|.+. .+|++.|..+++|++|++++ +.+..+| ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~----------------~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLT----------------EIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTES----------------EECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCC----------------ccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 5677777777665 66777799999999999999 5999998 56899999999999998
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=8.3e-06 Score=87.89 Aligned_cols=175 Identities=27% Similarity=0.314 Sum_probs=97.3
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCC-cceEEEccCCCCccccchhhhccCCCCEEeccCCCCcc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMP-LLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLV 455 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~-~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~ 455 (680)
..+..+.+.++.+.++ |+. ...+. +|+.|++++ +.+..+|..++.+++|+.|++++| .+.
T Consensus 116 ~~l~~L~l~~n~i~~i----------------~~~-~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~ 176 (394)
T COG4886 116 TNLTSLDLDNNNITDI----------------PPL-IGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLS 176 (394)
T ss_pred cceeEEecCCcccccC----------------ccc-cccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhh
Confidence 4566666666666554 332 23332 677777777 467777666777777777777777 577
Q ss_pred ccchhhhcCCCCCcEeeccCCc---chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccc
Q 041114 456 TIPLEVISNFSKLRVLRLFGTV---LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIA 532 (680)
Q Consensus 456 ~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~ 532 (680)
.+|.. .+.+.+|+.|+++++. .+..+..+.+|+.+.+..+. ............++..|.+.+++ ....+ ..
T Consensus 177 ~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n~-~~~~~-~~ 250 (394)
T COG4886 177 DLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSNNK-LEDLP-ES 250 (394)
T ss_pred hhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc---ceecchhhhhcccccccccCCce-eeecc-ch
Confidence 77764 4467777777777654 22222334445555555331 11111111222244444444433 12212 36
Q ss_pred cccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC
Q 041114 533 LARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 533 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~ 589 (680)
+..+++|+.|+++++ .+.+++. + +.+.+|+.|++++......+|
T Consensus 251 ~~~l~~l~~L~~s~n-~i~~i~~--~----------~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNN-QISSISS--L----------GSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceeccccc-ccccccc--c----------cccCccCEEeccCccccccch
Confidence 677777888888753 4443322 2 567888888888765444444
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.3e-07 Score=88.92 Aligned_cols=178 Identities=17% Similarity=0.084 Sum_probs=95.3
Q ss_pred CCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhcccc
Q 041114 442 NLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTR 515 (680)
Q Consensus 442 ~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~ 515 (680)
.|++|||+.+ .++. +-. +++.+.+|+.|.+.|.. ....+..=.+|+.|+++..++-.-..+..+...++.|.
T Consensus 186 Rlq~lDLS~s-~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchh-heeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4899999987 5653 222 35666777777777654 23344555666666666443332222333334455666
Q ss_pred EEEEeccCCCCccccccccc-CCCCCEEEEeccCCccee-ecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCC--CCc
Q 041114 516 ALVLIRFKDSKSIDVIALAR-LKHLSTLHFSKCEELEEW-KTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGL--TFL 591 (680)
Q Consensus 516 ~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~l~~l-~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l--~~l 591 (680)
.|++++|......--..+.+ -++|..|+++||..--.. ...-+. ...++|..|+|++|..++.- ..+
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~---------~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV---------RRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---------HhCCceeeeccccccccCchHHHHH
Confidence 77777765332221111111 236666777665432100 000000 34577777777777766541 124
Q ss_pred CCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccc
Q 041114 592 VFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPC 631 (680)
Q Consensus 592 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C 631 (680)
-+|+.|++|.++.|-.+..-... .++.+|+|..|++.+|
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccc
Confidence 56777777777777643322111 2356777777776655
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=2.6e-06 Score=86.63 Aligned_cols=216 Identities=18% Similarity=0.188 Sum_probs=121.3
Q ss_pred hccCCcceEEEccCCCCccccc-hhh-hccCCCCEEeccCCCCccccchh-hhcCCCCCcEeeccCCcchhh------hc
Q 041114 413 FQFMPLLKVLNMSRETNIKELL-GEL-KALVNLKCVNLEWARDLVTIPLE-VISNFSKLRVLRLFGTVLAKE------LL 483 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP-~~i-~~L~~Lr~L~L~~~~~l~~lP~~-~i~~L~~L~~L~l~~~~~~~~------l~ 483 (680)
-..++++..|++.+|..+++-- .++ ..+.+|++|++..|..++..--. ......+|++|++++|..+.+ ..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4567777777777776665322 233 36677888888777666653321 234567777888877764443 12
Q ss_pred CCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccccccc-ccCCCCCEEEEeccCCcceeecccCCCCc
Q 041114 484 GLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIAL-ARLKHLSTLHFSKCEELEEWKTDYTSGTV 562 (680)
Q Consensus 484 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (680)
+...++.+.........++.+........-+.++++..|..+.....-.+ ..+..||.|..++|..+.......++
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--- 316 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--- 316 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh---
Confidence 23334444333222223333433333333455566666654443332111 23567777888777776655444443
Q ss_pred cCCCCCCCCCCccEEeeeCCCCCCCCCC--c-CCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 563 LKSPQPFVFCSLHKVTITFCPKLKGLTF--L-VFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 563 l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
...++|+.|.+++|..+.+.-+ + .+.+.|+.|++.+|....+-.-.....+.|.|+.|.+++|......
T Consensus 317 ------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 317 ------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred ------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 3557788888888776655332 2 3577788888877765444322222345777777777777655443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=5.5e-06 Score=89.58 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=82.6
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCC-CCCcEeeccCCc--c
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNF-SKLRVLRLFGTV--L 478 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L-~~L~~L~l~~~~--~ 478 (680)
+|.+..+..+ +.-++.|+.|||++| .+.+.- .+..|++|++|||+.| .+..+|. ++.- ..|+.|.+++|. .
T Consensus 173 yN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~--l~~~gc~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 173 YNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQ--LSMVGCKLQLLNLRNNALTT 246 (1096)
T ss_pred hhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccc-hhccccc--cchhhhhheeeeecccHHHh
Confidence 4555555555 777899999999994 777764 8889999999999999 7999987 4332 249999999886 5
Q ss_pred hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 479 AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 479 ~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
+..+.+|++|+.|+++.+-.....+|..+.. +..|+.|.|.+++
T Consensus 247 L~gie~LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNP 290 (1096)
T ss_pred hhhHHhhhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCc
Confidence 6677788888888887543333333333322 2367777777765
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.6e-05 Score=87.18 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=69.9
Q ss_pred hccCCcceEEEccCCCCcc--ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC-----cchhhhcCC
Q 041114 413 FQFMPLLKVLNMSRETNIK--ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT-----VLAKELLGL 485 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~-----~~~~~l~~L 485 (680)
-..||.|+.|.+++ ..+. ++-.-..++++|+.||+++| +++.+ .+ |++|+|||+|.+++- ..+.++-+|
T Consensus 144 g~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~G-IS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 144 GTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SG-ISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc-HH-HhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 34567777777776 3332 22233456777777777777 67777 33 777777777766642 345567777
Q ss_pred CCCceeEEEeccchh----hhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEe
Q 041114 486 KHLEELDFTLRCVHS----LQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFS 545 (680)
Q Consensus 486 ~~L~~L~i~~~~~~~----l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 545 (680)
++|+.|+++...... +...-+....+++|+.|+.++..-....-...+...++|+....-
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 777777776432221 222222223345666666665432222222233344555544443
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.57 E-value=0.0002 Score=81.43 Aligned_cols=62 Identities=23% Similarity=0.453 Sum_probs=35.2
Q ss_pred hccCCcceEEEccCCCCc-cccchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc
Q 041114 413 FQFMPLLKVLNMSRETNI-KELLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i-~~lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
+..+++|+.|+|++| .+ ..+|..++.|++|++|+|++| .+. .+|.. +++|++|++|++++|.
T Consensus 438 i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~-l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 438 ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPES-LGQLTSLRILNLNGNS 501 (623)
T ss_pred HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCC-CCCCCCchH-HhcCCCCCEEECcCCc
Confidence 555666666666663 33 255555666666666666666 333 45554 5666666666665543
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00016 Score=75.61 Aligned_cols=64 Identities=11% Similarity=0.154 Sum_probs=43.3
Q ss_pred hhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCccee
Q 041114 481 ELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEW 553 (680)
Q Consensus 481 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 553 (680)
.+..++++..|++..+ .+..+| .+..+|+.|.+.+|..+..+|. .+ .++|+.|.+++|..+..+
T Consensus 47 r~~~~~~l~~L~Is~c---~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 47 QIEEARASGRLYIKDC---DIESLP---VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHHhcCCCEEEeCCC---CCcccC---CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccc
Confidence 3455677888888743 344444 3445789999988888777663 33 358899999888766543
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00012 Score=51.15 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 441 VNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 441 ~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
++|++|++++| +++.+|+. +++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcccCch-HhCCCCCCEEEecCCC
Confidence 57999999999 89999997 9999999999999984
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00012 Score=71.53 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=81.9
Q ss_pred hccCCcceEEEccCC---CCccccchhhhccCCCCEEeccCCCCcc--ccchhhhcCCCCCcEeeccCCcc----h--hh
Q 041114 413 FQFMPLLKVLNMSRE---TNIKELLGELKALVNLKCVNLEWARDLV--TIPLEVISNFSKLRVLRLFGTVL----A--KE 481 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~---~~i~~lP~~i~~L~~Lr~L~L~~~~~l~--~lP~~~i~~L~~L~~L~l~~~~~----~--~~ 481 (680)
+.+|++|++|+|+.| +.|.++| -.+++|+.|-|.++ .+. .... .+..|+.++.|.++.++. + ..
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT-~L~w~~~~s-~l~~lP~vtelHmS~N~~rq~n~Dd~c 167 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT-GLSWTQSTS-SLDDLPKVTELHMSDNSLRQLNLDDNC 167 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC-CCChhhhhh-hhhcchhhhhhhhccchhhhhcccccc
Confidence 456677777777764 2334444 34556666666665 332 1112 134455555555554320 0 00
Q ss_pred hcCC-CCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCccee-ecccCC
Q 041114 482 LLGL-KHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEW-KTDYTS 559 (680)
Q Consensus 482 l~~L-~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~ 559 (680)
.... +.+.+++...+......+...+.+..+++..+-+..|+-...........++.+--|+++. +.+.++ ..+.+
T Consensus 168 ~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~L- 245 (418)
T KOG2982|consen 168 IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDAL- 245 (418)
T ss_pred ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHH-
Confidence 0000 0111111111111111122223344456666666655422222222455566666666654 233322 12222
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCCCC-------cCCCCCCCEEeEe
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGLTF-------LVFAPNLKCLSLF 603 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~l~ 603 (680)
..|+.|+-|.+++.|.+..+.. ++.+++++.|+=+
T Consensus 246 ---------n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 246 ---------NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ---------cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 5678888888888775544432 4567887777533
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.31 E-value=0.00059 Score=77.56 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=62.3
Q ss_pred cceEEEccCCCCc-cccchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCcee
Q 041114 418 LLKVLNMSRETNI-KELLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEEL 491 (680)
Q Consensus 418 ~Lr~LdL~~~~~i-~~lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L 491 (680)
.++.|+|++| .+ ..+|..+++|++|++|+|++| .+. .+|.. ++.|++|++|++++|. .+..+.+|++|+.|
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 4788999995 55 478999999999999999999 565 88987 9999999999999885 34566777777777
Q ss_pred EEEec
Q 041114 492 DFTLR 496 (680)
Q Consensus 492 ~i~~~ 496 (680)
++..+
T Consensus 496 ~Ls~N 500 (623)
T PLN03150 496 NLNGN 500 (623)
T ss_pred ECcCC
Confidence 77643
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.29 E-value=0.00018 Score=71.91 Aligned_cols=241 Identities=16% Similarity=0.106 Sum_probs=131.0
Q ss_pred cccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCC---CCccccchh-------hhcc
Q 041114 371 PEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRE---TNIKELLGE-------LKAL 440 (680)
Q Consensus 371 ~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~---~~i~~lP~~-------i~~L 440 (680)
+.......+..|.+++|.+..-.. +.+. ..+.+.+.||.-++|.- ....++|+. +-..
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa-----------~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAA-----------RAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHH-----------HHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC
Confidence 344566788999999888743100 0111 12555667777777752 112234433 2345
Q ss_pred CCCCEEeccCCCCccc-cch---hhhcCCCCCcEeeccCCcc-----------------hhhhcCCCCCceeEEEeccch
Q 041114 441 VNLKCVNLEWARDLVT-IPL---EVISNFSKLRVLRLFGTVL-----------------AKELLGLKHLEELDFTLRCVH 499 (680)
Q Consensus 441 ~~Lr~L~L~~~~~l~~-lP~---~~i~~L~~L~~L~l~~~~~-----------------~~~l~~L~~L~~L~i~~~~~~ 499 (680)
++|++||||.| -+.. -+. +.|++.++|++|++.+|-. -...++-+.|+.+....+...
T Consensus 92 ~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 57888888877 3431 111 1366778888888877641 111233456666666543322
Q ss_pred h--hhhhhhchhhhccccEEEEeccCCCCc---ccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCc
Q 041114 500 S--LQILVSSNKLQSCTRALVLIRFKDSKS---IDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSL 574 (680)
Q Consensus 500 ~--l~~l~~~~~l~~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L 574 (680)
+ ...+.......+.|+.+.+..+.-... .-...+.++++|+.|+|.++.-... ....+. ...+.+++|
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-gs~~La------kaL~s~~~L 243 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-GSVALA------KALSSWPHL 243 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-HHHHHH------HHhcccchh
Confidence 1 112222223335677777766542111 1112677889999999976422111 111110 001456889
Q ss_pred cEEeeeCCCCCCCCC-------CcCCCCCCCEEeEecCcchhHhh--hcCCCCCCCcccccCccccc
Q 041114 575 HKVTITFCPKLKGLT-------FLVFAPNLKCLSLFDCTAMEEII--SAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 575 ~~L~L~~c~~l~~l~-------~l~~l~~L~~L~l~~c~~l~~i~--~~~~~~~lp~L~~L~i~~C~ 632 (680)
+.|++++|. ++.=- .-...|+|+.|.+.+|..-.+-. ........|.|+.|++.+|.
T Consensus 244 ~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999986 22211 12348999999999875322211 11112458888888888876
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.27 E-value=0.00011 Score=79.63 Aligned_cols=105 Identities=26% Similarity=0.304 Sum_probs=76.3
Q ss_pred cccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCc
Q 041114 375 EWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDL 454 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l 454 (680)
...++..+.+.+|.+..+. .. +..+.+|++|++++ +.|.++. ++..|+.|+.|++.+| .+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~----------------~~-l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N-~i 152 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIE----------------NL-LSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN-LI 152 (414)
T ss_pred cccceeeeeccccchhhcc----------------cc-hhhhhcchheeccc-ccccccc-chhhccchhhheeccC-cc
Confidence 3467788888888776542 21 45688899999999 5888885 6778888999999999 68
Q ss_pred cccchhhhcCCCCCcEeeccCCc--chhh--hcCCCCCceeEEEeccchhh
Q 041114 455 VTIPLEVISNFSKLRVLRLFGTV--LAKE--LLGLKHLEELDFTLRCVHSL 501 (680)
Q Consensus 455 ~~lP~~~i~~L~~L~~L~l~~~~--~~~~--l~~L~~L~~L~i~~~~~~~l 501 (680)
..++. +..+.+|+.++++++. .+.. +..+..|+.+.+..+....+
T Consensus 153 ~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 153 SDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 88876 7778899999998875 3344 46677777777664443333
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.25 E-value=7.2e-05 Score=74.76 Aligned_cols=185 Identities=20% Similarity=0.118 Sum_probs=120.5
Q ss_pred hccCCcceEEEccCCCC----ccccchhhhccCCCCEEeccCCCCccccchhh-------------hcCCCCCcEeeccC
Q 041114 413 FQFMPLLKVLNMSRETN----IKELLGELKALVNLKCVNLEWARDLVTIPLEV-------------ISNFSKLRVLRLFG 475 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~----i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~-------------i~~L~~L~~L~l~~ 475 (680)
+.++++|++||||.|.- +..+-.-|..+..|++|.|.+| .+...-.+. +++-..|+++...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 56778999999999722 2223344667899999999999 776432221 34557899998887
Q ss_pred Cc--------chhhhcCCCCCceeEEEeccch--hhhhhhhchhhhccccEEEEeccCCCCcccc---cccccCCCCCEE
Q 041114 476 TV--------LAKELLGLKHLEELDFTLRCVH--SLQILVSSNKLQSCTRALVLIRFKDSKSIDV---IALARLKHLSTL 542 (680)
Q Consensus 476 ~~--------~~~~l~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L 542 (680)
|. .-..++..+.|+.+.+.-++.. ...-+......+++|+.|+|+++.-...-.. ..++.+++|++|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 65 2234566678888887754432 2223334445577999999998753222111 267788999999
Q ss_pred EEeccCCccee---ecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCC-----CCcCCCCCCCEEeEecCcc
Q 041114 543 HFSKCEELEEW---KTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGL-----TFLVFAPNLKCLSLFDCTA 607 (680)
Q Consensus 543 ~l~~~~~l~~l---~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l-----~~l~~l~~L~~L~l~~c~~ 607 (680)
++++|.--..- ..+.+. ...++|+.|.+.+|..-..- -+....|.|+.|.|++|..
T Consensus 247 ~l~dcll~~~Ga~a~~~al~---------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALK---------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHh---------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99988533211 111111 34789999999997632221 1245689999999998653
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.24 E-value=1.5e-05 Score=86.40 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=72.9
Q ss_pred ecCCCcccccccccccceEEEEeecccccccccCC---------CCccc--------cccccccchhhhccCCcceEEEc
Q 041114 362 CAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAP---------TCPHL--------HYEFKMITDGFFQFMPLLKVLNM 424 (680)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~---------~~~~L--------~~~l~~lp~~~~~~l~~Lr~LdL 424 (680)
..+.+-.+.-+...++.+|+|-+.+.++....+.. -|.+- ......+..++ -...|.+-+.
T Consensus 94 ~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~f 171 (1096)
T KOG1859|consen 94 SPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASF 171 (1096)
T ss_pred cCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhc
Confidence 34444444445677889999999999887643321 11111 11111122211 1245777788
Q ss_pred cCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 425 SRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 425 ~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
++ +.+..+-+++.-|++|++|||++| ++..... +..|.+|++||++.|.
T Consensus 172 sy-N~L~~mD~SLqll~ale~LnLshN-k~~~v~~--Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 172 SY-NRLVLMDESLQLLPALESLNLSHN-KFTKVDN--LRRLPKLKHLDLSYNC 220 (1096)
T ss_pred ch-hhHHhHHHHHHHHHHhhhhccchh-hhhhhHH--HHhcccccccccccch
Confidence 88 588888888999999999999999 7887763 8889999999998763
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.19 E-value=7.6e-05 Score=80.77 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=79.5
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCce
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEE 490 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~ 490 (680)
+..+.+|.+|++.. +.|+.+...+..+++|++|++++| .|+.+.. +..|..|+.|++.+|. .+..+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccCcchhccCCccchhhhc
Confidence 56789999999999 589888766899999999999999 7999987 8999999999999975 5666777788888
Q ss_pred eEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 491 LDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 491 L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
+++..+....+...+ ...+.+++.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE--LSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhh--hhhccchHHHhccCCc
Confidence 887755555444410 1222355555555543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.00028 Score=69.01 Aligned_cols=78 Identities=27% Similarity=0.286 Sum_probs=48.3
Q ss_pred ccCCcceEEEccCCCCccc---cchhhhccCCCCEEeccCCCCccccchhhh-cCCCCCcEeeccCCcchh-----hhcC
Q 041114 414 QFMPLLKVLNMSRETNIKE---LLGELKALVNLKCVNLEWARDLVTIPLEVI-SNFSKLRVLRLFGTVLAK-----ELLG 484 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~---lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i-~~L~~L~~L~l~~~~~~~-----~l~~ 484 (680)
.....++-|||.+| .|.. +-.-+.+|++|++|+|+.| .+..--.+ . -.+.+|++|-+.|....+ -+..
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCC-cCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 45778899999994 5543 3333558999999999988 45421111 1 134688888888765332 2334
Q ss_pred CCCCceeEEE
Q 041114 485 LKHLEELDFT 494 (680)
Q Consensus 485 L~~L~~L~i~ 494 (680)
++.++.|+++
T Consensus 145 lP~vtelHmS 154 (418)
T KOG2982|consen 145 LPKVTELHMS 154 (418)
T ss_pred chhhhhhhhc
Confidence 4555555544
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=0.0003 Score=60.98 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=67.7
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT 456 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~ 456 (680)
..+..+++++|.+. .+|+.|-.+++.++.|+|++ +.|.++|.++..++.||.|+++.| .+..
T Consensus 53 ~el~~i~ls~N~fk----------------~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFK----------------KFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNA 114 (177)
T ss_pred ceEEEEecccchhh----------------hCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-cccc
Confidence 35667788877665 66777777788899999999 599999999999999999999999 6888
Q ss_pred cchhhhcCCCCCcEeeccCCc
Q 041114 457 IPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 457 lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.|. +|-.|.+|-.|+..++.
T Consensus 115 ~p~-vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 115 EPR-VIAPLIKLDMLDSPENA 134 (177)
T ss_pred chH-HHHHHHhHHHhcCCCCc
Confidence 888 48888888888887654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.0011 Score=75.46 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCcceEEEccCCCCccc-cchhhh-ccCCCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCCc--chhhhcCCCCCc
Q 041114 416 MPLLKVLNMSRETNIKE-LLGELK-ALVNLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLE 489 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~~-lP~~i~-~L~~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~ 489 (680)
-.+|+.||+++...+.. -|..+| .||+|+.|.+.+- .+.. +-. ...+++||..||++++. .+.++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQ-LCASFPNLRSLDISGTNISNLSGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHH-HhhccCccceeecCCCCccCcHHHhccccHH
Confidence 46789999988544433 345666 6799999999885 2321 222 25678999999999875 667888888888
Q ss_pred eeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccc-----ccccccCCCCCEEEEec
Q 041114 490 ELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID-----VIALARLKHLSTLHFSK 546 (680)
Q Consensus 490 ~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~-----~~~l~~l~~L~~L~l~~ 546 (680)
.|.+..-.......+..+.. +++|+.|+++......... ...-..+|+|+.|+.++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 88776332222223333332 3488888888765433321 11334477888888876
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.88 E-value=0.0013 Score=72.65 Aligned_cols=117 Identities=25% Similarity=0.231 Sum_probs=61.2
Q ss_pred ccCCcceEEEccCCCCccc--cchhhhccCCCCEEeccCC-CCccccc---hhhhcCCCCCcEeeccCCcchhhhcCCCC
Q 041114 414 QFMPLLKVLNMSRETNIKE--LLGELKALVNLKCVNLEWA-RDLVTIP---LEVISNFSKLRVLRLFGTVLAKELLGLKH 487 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~--lP~~i~~L~~Lr~L~L~~~-~~l~~lP---~~~i~~L~~L~~L~l~~~~~~~~l~~L~~ 487 (680)
..+++|+.|.+.+|..+.. +-......++|+.|++++| ......| ......+.+|+.|+++.|..+.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is------- 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT------- 257 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-------
Confidence 3467777777777766665 3345567777888887762 2222222 1113344566666666554211
Q ss_pred CceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccccc-ccccCCCCCEEEEeccCCc
Q 041114 488 LEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVI-ALARLKHLSTLHFSKCEEL 550 (680)
Q Consensus 488 L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l 550 (680)
...+.. ....+++|+.|.+.+|..+....+. ....+++|++|++++|..+
T Consensus 258 ----------d~~l~~---l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 ----------DIGLSA---LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred ----------chhHHH---HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 011111 1122446666666666543333222 2334666777777777665
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.0042 Score=68.71 Aligned_cols=83 Identities=23% Similarity=0.128 Sum_probs=39.3
Q ss_pred hccCCcceEEEccCC-CCccccc----hhhhccCCCCEEeccCCCCccccchhhhc-CCCCCcEeeccCCcch--hhh--
Q 041114 413 FQFMPLLKVLNMSRE-TNIKELL----GELKALVNLKCVNLEWARDLVTIPLEVIS-NFSKLRVLRLFGTVLA--KEL-- 482 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~-~~i~~lP----~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~-~L~~L~~L~l~~~~~~--~~l-- 482 (680)
...+++|+.|++++| ..+...| .....+.+|+.|++++|..+...--..+. .+.+|++|.+.+|..+ ..+
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 455666777777652 1211111 22334566667777766333332211122 2556666666555421 111
Q ss_pred --cCCCCCceeEEEe
Q 041114 483 --LGLKHLEELDFTL 495 (680)
Q Consensus 483 --~~L~~L~~L~i~~ 495 (680)
..+++|+.|++..
T Consensus 290 i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 290 IAERCPSLRELDLSG 304 (482)
T ss_pred HHHhcCcccEEeeec
Confidence 2345566666653
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0011 Score=61.67 Aligned_cols=70 Identities=23% Similarity=0.489 Sum_probs=51.4
Q ss_pred ccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCC--CCCcCCCCCCCEEeEecCcchh
Q 041114 532 ALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKG--LTFLVFAPNLKCLSLFDCTAME 609 (680)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c~~l~ 609 (680)
.+..++.++.|.+.+|..+.+...+.+. +-+++|+.|+|++|+.+++ +-++..+++|+.|.|.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~---------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG---------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc---------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 5556677788888888777766666654 3468888888888887765 5567788888888888866544
Q ss_pred H
Q 041114 610 E 610 (680)
Q Consensus 610 ~ 610 (680)
.
T Consensus 191 ~ 191 (221)
T KOG3864|consen 191 N 191 (221)
T ss_pred c
Confidence 3
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.023 Score=53.07 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=45.6
Q ss_pred hccCCcceEEEccCCCCccccchhhhc-cCCCCEEeccCCCCccccch-hhhcCCCCCcEeeccCCc-------chhhhc
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKA-LVNLKCVNLEWARDLVTIPL-EVISNFSKLRVLRLFGTV-------LAKELL 483 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~-L~~Lr~L~L~~~~~l~~lP~-~~i~~L~~L~~L~l~~~~-------~~~~l~ 483 (680)
|..++.|.+|.|++ +.|..+-..++. +++|..|.|.+| +|.++-+ .-+..++.|++|.+-++. ..--+-
T Consensus 60 lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 55667777777777 467666655553 345777777776 4555432 003455666666666543 111234
Q ss_pred CCCCCceeEEE
Q 041114 484 GLKHLEELDFT 494 (680)
Q Consensus 484 ~L~~L~~L~i~ 494 (680)
.+++|+.|+..
T Consensus 138 klp~l~~LDF~ 148 (233)
T KOG1644|consen 138 KLPSLRTLDFQ 148 (233)
T ss_pred ecCcceEeehh
Confidence 45666666654
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.01 Score=34.46 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=11.9
Q ss_pred CCCEEeccCCCCccccchhhhcC
Q 041114 442 NLKCVNLEWARDLVTIPLEVISN 464 (680)
Q Consensus 442 ~Lr~L~L~~~~~l~~lP~~~i~~ 464 (680)
+|++|+|++| +++.+|.+ +++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT
T ss_pred CccEEECCCC-cCEeCChh-hcC
Confidence 3556666666 56666654 443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.81 E-value=0.037 Score=51.70 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=43.0
Q ss_pred CcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcC-CCCCcEeeccCCc
Q 041114 417 PLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISN-FSKLRVLRLFGTV 477 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~-L~~L~~L~l~~~~ 477 (680)
...-.+||+. +.+..++ .+..+..|.+|.|.+| .|..+.+. +.. +.+|++|.+.+++
T Consensus 42 d~~d~iDLtd-Ndl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 42 DQFDAIDLTD-NDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccceecccc-cchhhcc-cCCCccccceEEecCC-cceeeccc-hhhhccccceEEecCcc
Confidence 4456788888 4776664 5567888999999988 78888876 544 5678888888765
No 65
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.60 E-value=0.1 Score=47.07 Aligned_cols=106 Identities=12% Similarity=0.201 Sum_probs=78.4
Q ss_pred eeecchhhhhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 041114 6 QITCDDAFFNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETD 85 (680)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~e 85 (680)
++++. ++++.|...+.+.......++.-++.|..+++.|.-+ +++-+.-+..-+..-+.=++++.+...++.
T Consensus 8 gaalG-~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~-------i~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 8 GAALG-AVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPI-------IKEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhH-------HHHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 34444 4489999999999999999999999999999999999 555555554434444778899999999999
Q ss_pred HHHHHhHHHhcccCCCCccCCCchhhhhHHHHHHHHHHHHHHH
Q 041114 86 ELIRRSSKEIDKLCPRAYCSKSCKSSYKFRKQVAKKLRDVRTL 128 (680)
Q Consensus 86 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~ 128 (680)
++++.|..-. + -++...++..++|++.-+.+...
T Consensus 80 ~LV~k~sk~~-r--------~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 80 ELVEKCSKVR-R--------WNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHhcccc-H--------HHHHhhHhHHHHHHHHHHHHHHH
Confidence 9999974311 1 14455677777777766655443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.56 E-value=0.023 Score=55.24 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=46.7
Q ss_pred hccCCcceEEEccCC--CCccccchhhhccCCCCEEeccCCCCcc---ccchhhhcCCCCCcEeeccCCcc
Q 041114 413 FQFMPLLKVLNMSRE--TNIKELLGELKALVNLKCVNLEWARDLV---TIPLEVISNFSKLRVLRLFGTVL 478 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~--~~i~~lP~~i~~L~~Lr~L~L~~~~~l~---~lP~~~i~~L~~L~~L~l~~~~~ 478 (680)
|..|++|+.|++|.| .-...++-....+++|++|++++| +++ ++++ +.+|.+|..|+++.|+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hhhhcchhhhhcccCCc
Confidence 446889999999986 333466666667799999999999 565 3444 56777888888888753
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.11 E-value=0.024 Score=32.88 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.4
Q ss_pred cceEEEccCCCCccccchhhhcc
Q 041114 418 LLKVLNMSRETNIKELLGELKAL 440 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~~lP~~i~~L 440 (680)
+|++|||++| .++.+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999996 999999887764
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.80 E-value=0.016 Score=54.00 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=18.3
Q ss_pred hccccEEEEeccCCCCcccccccccCCCCCEEEEec
Q 041114 511 QSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSK 546 (680)
Q Consensus 511 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 546 (680)
.++|+.|++++|..+++..+..+.++++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 335555555555555544444555555555555544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.79 E-value=0.038 Score=53.76 Aligned_cols=106 Identities=21% Similarity=0.152 Sum_probs=56.4
Q ss_pred cCCcceEEEccCCCCccccchhhhccCCCCEEeccCC--CCccccchhhhcCCCCCcEeeccCCc-----chhhhcCCCC
Q 041114 415 FMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWA--RDLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGLKH 487 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~--~~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~ 487 (680)
.+..|..|++.++ .+.++ ..+-.|++|++|+++.| .-...++.- ..++.+|++|++++|. .+..++.|.+
T Consensus 41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3455555555552 33322 23337889999999988 333345543 5667999999999875 3334444555
Q ss_pred CceeEEEeccchhhhhhh-hchhhhccccEEEEeccC
Q 041114 488 LEELDFTLRCVHSLQILV-SSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 488 L~~L~i~~~~~~~l~~l~-~~~~l~~~L~~L~l~~~~ 523 (680)
|..|++..+..+.+..-. ....++++|.+|+-..+.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 555555543333222111 112334455555444443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.29 E-value=0.22 Score=43.76 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred ccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
.++...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+.++ +..++...+..+.+|+.+.+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS
T ss_pred EECHHHHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc
Confidence 45666788888999998875 577777 44777878999988774 7888887677877888888854
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.86 E-value=0.072 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=6.6
Q ss_pred CCCEEeccCCCCccccc
Q 041114 442 NLKCVNLEWARDLVTIP 458 (680)
Q Consensus 442 ~Lr~L~L~~~~~l~~lP 458 (680)
+|+.|+|++| .++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 4555555555 355544
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.77 E-value=0.027 Score=49.24 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=50.7
Q ss_pred hccCCcceEEEccCCCCccccchhhhcc-CCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKAL-VNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L-~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
+.+..+|...+|++ +.++++|+.+... +.+..|++.+| .+.++|.+ +..++.|+.|+++.+.
T Consensus 49 l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred HhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCc
Confidence 45667788889998 5888899877754 47889999998 79999998 8888888888888765
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.65 E-value=0.11 Score=27.86 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=11.2
Q ss_pred CcceEEEccCCCCccccc
Q 041114 417 PLLKVLNMSRETNIKELL 434 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP 434 (680)
++|++|+|++| .++++|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 47999999996 688887
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.26 E-value=0.024 Score=55.34 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=60.2
Q ss_pred cCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chh---hhcCCCCCc
Q 041114 415 FMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAK---ELLGLKHLE 489 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~---~l~~L~~L~ 489 (680)
.+.+.+.|+..+| .+..+ .-+.+++.|+.|.|+-| +|++|-+ +..+++|++|+++.|. .+. -|.+|++|+
T Consensus 17 dl~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvN-kIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVN-KISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCC-CccHH-HHHHhcccceeEEeecc-ccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3567788899885 77766 34568999999999999 7999987 8999999999999775 333 456777777
Q ss_pred eeEEEecc
Q 041114 490 ELDFTLRC 497 (680)
Q Consensus 490 ~L~i~~~~ 497 (680)
.|.+.-+.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 77776443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.15 E-value=0.24 Score=29.84 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.6
Q ss_pred cCCCCEEeccCCCCccccchh
Q 041114 440 LVNLKCVNLEWARDLVTIPLE 460 (680)
Q Consensus 440 L~~Lr~L~L~~~~~l~~lP~~ 460 (680)
|++|++|+|++| .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 456777777777 67777776
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.15 E-value=0.24 Score=29.84 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.6
Q ss_pred cCCCCEEeccCCCCccccchh
Q 041114 440 LVNLKCVNLEWARDLVTIPLE 460 (680)
Q Consensus 440 L~~Lr~L~L~~~~~l~~lP~~ 460 (680)
|++|++|+|++| .++.+|.+
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHH
Confidence 456777777777 67777776
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.68 E-value=0.26 Score=48.27 Aligned_cols=242 Identities=15% Similarity=0.080 Sum_probs=117.1
Q ss_pred cccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCC--C-Cccccch-------hhhccCCCC
Q 041114 375 EWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRE--T-NIKELLG-------ELKALVNLK 444 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~--~-~i~~lP~-------~i~~L~~Lr 444 (680)
....+..+.+++|.+..-... .+.. .+.+-++|++-+++.- . ...++|+ .+-++++|+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e-----------~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAME-----------ELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred hhcceeEEeccCCcccHHHHH-----------HHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 467888999999887532110 1111 1344566777666642 0 0112332 344667777
Q ss_pred EEeccCCCCccccchh---hhcCCCCCcEeeccCCc-------chh----------hhcCCCCCceeEEEeccchhhh--
Q 041114 445 CVNLEWARDLVTIPLE---VISNFSKLRVLRLFGTV-------LAK----------ELLGLKHLEELDFTLRCVHSLQ-- 502 (680)
Q Consensus 445 ~L~L~~~~~l~~lP~~---~i~~L~~L~~L~l~~~~-------~~~----------~l~~L~~L~~L~i~~~~~~~l~-- 502 (680)
..+|+.|..-.+.|+. .|++-+.|.+|.+++|. .++ ...+-+.|+...+.-+...+..
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 7777777433333332 35666777777777653 111 1123345555555433222111
Q ss_pred hhhhchhhhccccEEEEeccCCCCcc-----cccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEE
Q 041114 503 ILVSSNKLQSCTRALVLIRFKDSKSI-----DVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKV 577 (680)
Q Consensus 503 ~l~~~~~l~~~L~~L~l~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L 577 (680)
........-.+|..+.+..+. ++.- ..-.+..+.+|+.|++....-.. .....+. .-. ...+.|+.|
T Consensus 176 ~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~-~gS~~La---~al---~~W~~lrEL 247 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EGSRYLA---DAL---CEWNLLREL 247 (388)
T ss_pred HHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhh-hhHHHHH---HHh---cccchhhhc
Confidence 111111112367777776653 2221 11245567788888887632111 1110000 001 123568888
Q ss_pred eeeCCCCCCC-C-CC-----cCCCCCCCEEeEecCcchhHhhhc-----CCCCCCCcccccCccccccCCCC
Q 041114 578 TITFCPKLKG-L-TF-----LVFAPNLKCLSLFDCTAMEEIISA-----GKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 578 ~L~~c~~l~~-l-~~-----l~~l~~L~~L~l~~c~~l~~i~~~-----~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
.+.+|-.-.. . .. -...|+|..|...+...-..++.. ..-+++|-|..|.+.+ .+++++
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 8888851110 0 00 124677777776664332222111 1115678887777665 334443
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=0.095 Score=51.37 Aligned_cols=79 Identities=28% Similarity=0.357 Sum_probs=56.7
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT 456 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~ 456 (680)
.+++.|...++.+.++ ++..+|+.|.||.||- +.|.+| +.+..+++|+.|.|+.| .|..
T Consensus 19 ~~vkKLNcwg~~L~DI------------------sic~kMp~lEVLsLSv-NkIssL-~pl~rCtrLkElYLRkN-~I~s 77 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI------------------SICEKMPLLEVLSLSV-NKISSL-APLQRCTRLKELYLRKN-CIES 77 (388)
T ss_pred HHhhhhcccCCCccHH------------------HHHHhcccceeEEeec-cccccc-hhHHHHHHHHHHHHHhc-cccc
Confidence 4566666666666544 2367889999999998 488877 46788888999999988 6777
Q ss_pred cch-hhhcCCCCCcEeeccCC
Q 041114 457 IPL-EVISNFSKLRVLRLFGT 476 (680)
Q Consensus 457 lP~-~~i~~L~~L~~L~l~~~ 476 (680)
+.+ ..+.+|++|++|-+..|
T Consensus 78 ldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHHHHhcCchhhhHhhccC
Confidence 654 11467778888877653
No 79
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=86.02 E-value=1.6 Score=43.57 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=59.5
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRS 91 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~ 91 (680)
+.+|-....+....+-.++.+++-++.++++++.+...| +|+...+++. .+....++...||++|-++|-+
T Consensus 302 L~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 302 LKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKHDT-NEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhhhh-hhhHHHHHHHHHhheeeeeehh
Confidence 778888888888889999999999999999999995543 3554555455 8899999999999999999884
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.71 E-value=0.21 Score=47.70 Aligned_cols=67 Identities=16% Similarity=0.087 Sum_probs=55.0
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhh
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKEL 482 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l 482 (680)
|+.+..|..||++. +.+..+|+..+.+..++.+++..| +.+.+|.+ .+++.++++++..++.....+
T Consensus 61 ~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 61 FSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred hHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcchhhhccCcchHHH
Confidence 56677788888888 588889999999999999999888 78999997 899999999988877644433
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.60 E-value=2.3 Score=41.96 Aligned_cols=191 Identities=17% Similarity=0.093 Sum_probs=108.5
Q ss_pred hccCCcceEEEccCCCCccccchh----hhccCCCCEEeccCCCCccccchhhhc-------------CCCCCcEeeccC
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGE----LKALVNLKCVNLEWARDLVTIPLEVIS-------------NFSKLRVLRLFG 475 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~----i~~L~~Lr~L~L~~~~~l~~lP~~~i~-------------~L~~L~~L~l~~ 475 (680)
+-+|++|+..+||.|..-.+.|+. |..-+.|.+|.+++| .+..+..+-|+ .-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 678999999999997333445544 567788999999999 78765433232 345677777765
Q ss_pred Ccc---hh-----hhcCCCCCceeEEEeccchh--hhhhhhc-hhhhccccEEEEeccCCCC----cccccccccCCCCC
Q 041114 476 TVL---AK-----ELLGLKHLEELDFTLRCVHS--LQILVSS-NKLQSCTRALVLIRFKDSK----SIDVIALARLKHLS 540 (680)
Q Consensus 476 ~~~---~~-----~l~~L~~L~~L~i~~~~~~~--l~~l~~~-~~l~~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~ 540 (680)
+.. .. .+..-..|+.+.+.-++... +..+... ...+.+|+.|+++.+.-.. .+. ..++..+.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La-~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA-DALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH-HHhcccchhh
Confidence 541 11 22333577777776554331 1211111 1234589999998875211 111 1567788899
Q ss_pred EEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCC------CCCC--cCCCCCCCEEeEecCcchhHh
Q 041114 541 TLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLK------GLTF--LVFAPNLKCLSLFDCTAMEEI 611 (680)
Q Consensus 541 ~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~------~l~~--l~~l~~L~~L~l~~c~~l~~i 611 (680)
+|.+..|--...-....+. -..--.+++|..|....+..-. .++. -..+|-|..|.+.+ +.+++.
T Consensus 246 EL~lnDClls~~G~~~v~~-----~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLR-----RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred hccccchhhccccHHHHHH-----HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 9999887432210000000 0000245777777766643211 1222 24688888888876 444443
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.88 E-value=10 Score=45.75 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCC-hhhHHHHHHHh-HhcCCchhHHHHHHHh
Q 041114 201 ELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGL-VKEVYPLLKFS-YDSLQNDVIRSCFLYC 278 (680)
Q Consensus 201 ~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~-~~~i~~~L~~S-y~~L~~~~lk~cfl~~ 278 (680)
+....+.+.|+|.|+++..++..+....... ......+ .+. ...+...+.-. ++.||+ ..+..++..
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~ 274 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRL--------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRC 274 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhh--------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHh
Confidence 4457899999999999999988875522100 1111111 110 12455554444 789999 899999999
Q ss_pred cccCCCcccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHccccccc---CcccEEechhHHHHHHHHH
Q 041114 279 CLYPEDFAILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEV---GDDKVKLHGVLHDMALWIS 349 (680)
Q Consensus 279 s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~---~~~~~~mhdl~~d~a~~i~ 349 (680)
|+++ .++.+ +.. .+.+. +.+...+++|...+++... ....|+.|++++++.....
T Consensus 275 a~~~---~~~~~-l~~-----~l~~~-------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 275 SVLR---SMNDA-LIV-----RVTGE-------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred cccc---cCCHH-HHH-----HHcCC-------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 9987 33422 222 11111 2345779999999997642 2347899999999998765
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.29 E-value=5.3 Score=34.76 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=31.2
Q ss_pred cccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC--C
Q 041114 513 CTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT--F 590 (680)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~ 590 (680)
+|+.+.+.. .+..++...+..+++|+.+.+.+ .+..+..... ...++|+.+.+.+ .+..++ .
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F----------~~~~~l~~i~~~~--~~~~i~~~~ 76 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAF----------SNCKSLESITFPN--NLKSIGDNA 76 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTT----------TT-TT-EEEEETS--TT-EE-TTT
T ss_pred CCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeee----------ecccccccccccc--ccccccccc
Confidence 445555442 23344444556666667666654 2444433322 3444566666654 222222 3
Q ss_pred cCCCCCCCEEeEe
Q 041114 591 LVFAPNLKCLSLF 603 (680)
Q Consensus 591 l~~l~~L~~L~l~ 603 (680)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 4456666666664
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.75 E-value=1.8 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.2
Q ss_pred CCcceEEEccCCCCccccchhhh
Q 041114 416 MPLLKVLNMSRETNIKELLGELK 438 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~~lP~~i~ 438 (680)
+.+|++|+|++ +.+..+|.++.
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 46899999999 49999997643
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.75 E-value=1.8 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.2
Q ss_pred CCcceEEEccCCCCccccchhhh
Q 041114 416 MPLLKVLNMSRETNIKELLGELK 438 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~~lP~~i~ 438 (680)
+.+|++|+|++ +.+..+|.++.
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 46899999999 49999997643
No 86
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.00 E-value=20 Score=29.21 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=48.1
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIR 89 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld 89 (680)
+.+|-+.+.+.+. -..+...++.+++.|.+-+..+..+++.++.+........+.--+++..++..+.++++
T Consensus 17 id~LE~~v~~r~~----~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 17 IDRLEKAVDRRLE----RDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHHHHHH----hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444443 33344778888888888888888888888887766555555666677777777766664
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.81 E-value=2.7 Score=25.24 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=10.0
Q ss_pred CCCCEEeEecCcchhHh
Q 041114 595 PNLKCLSLFDCTAMEEI 611 (680)
Q Consensus 595 ~~L~~L~l~~c~~l~~i 611 (680)
|+|++|+|++|..+.+.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 56666666666655443
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.01 E-value=23 Score=26.74 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=42.8
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDE 86 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed 86 (680)
+++|-.-+.+-+.-..-+.-+++.|+.+-..+..-..+.+...+.-++........-..|-.+++.+.-.+|+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme~ 78 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6666666666666666666677777777776665544433333322222222224445799999888766654
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.03 E-value=5.6 Score=24.05 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.0
Q ss_pred CCCCEEeccCCCCccccch
Q 041114 441 VNLKCVNLEWARDLVTIPL 459 (680)
Q Consensus 441 ~~Lr~L~L~~~~~l~~lP~ 459 (680)
.+|++|++++| +++++|.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 35788888888 6888886
No 90
>PTZ00202 tuzin; Provisional
Probab=58.34 E-value=75 Score=34.43 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=26.8
Q ss_pred ccccccHHHHHHHHHHHhhhc---cccceeeeccccc
Q 041114 152 EQIVEGLQSQLKQVWRCLVEE---SIGIIGLYGMGSV 185 (680)
Q Consensus 152 ~~~v~gr~~~~~~i~~~L~~~---~~~vi~i~GmgGi 185 (680)
.+.++||+.++..+...|.+. ...++.|.|+.|+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~ 297 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGC 297 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCC
Confidence 356789999999999999652 2347889999876
No 91
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=51.06 E-value=11 Score=36.64 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=24.1
Q ss_pred cccHHHHHHHHHHHhhhccccceeeeccccc
Q 041114 155 VEGLQSQLKQVWRCLVEESIGIIGLYGMGSV 185 (680)
Q Consensus 155 v~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi 185 (680)
++||++++++|.+.+..+..+.+.|+|..|+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~ 31 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGS 31 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTS
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcC
Confidence 4699999999999998877888889998877
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=49.12 E-value=14 Score=22.36 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=11.0
Q ss_pred cCCCCEEeccCCCCcccc
Q 041114 440 LVNLKCVNLEWARDLVTI 457 (680)
Q Consensus 440 L~~Lr~L~L~~~~~l~~l 457 (680)
|++|+.|+|+.| .|+.+
T Consensus 1 L~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 1 LTNLEELDLSQN-KIKKI 17 (26)
T ss_pred CCccCEEECCCC-cccee
Confidence 456777777777 45543
No 93
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=46.49 E-value=11 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=5.3
Q ss_pred CCCCEEeccCC
Q 041114 441 VNLKCVNLEWA 451 (680)
Q Consensus 441 ~~Lr~L~L~~~ 451 (680)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45666666665
No 94
>PRK11020 hypothetical protein; Provisional
Probab=39.28 E-value=2.2e+02 Score=24.14 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 041114 38 LAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRR 90 (680)
Q Consensus 38 L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~ 90 (680)
++.++..|....+..+.+++.|+.++.. +-+....+++..+.-+++.+-..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~--~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA--EKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555558888777654 56667777777777777766544
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=39.18 E-value=4 Score=39.37 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=41.5
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCC
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWAR 452 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~ 452 (680)
+.+..+|.+ ++....++.+++.. ++.+.+|.+.+.++|++++++.++.
T Consensus 75 nq~~~~~~d-~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 75 NQIKFLPKD-AKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hhHhhChhh-HHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 344467777 78889999999998 5999999999999999999999985
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=35.70 E-value=2.3e+02 Score=33.04 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH------------------HHHHHHHHHHHHHHHHHHHHhHHH
Q 041114 33 DNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQV------------------QVWLSRVEAVKTETDELIRRSSKE 94 (680)
Q Consensus 33 ~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v------------------~~Wl~~v~~~~~d~ed~ld~~~~~ 94 (680)
++++.++++.+.|++....+.+++++|..+|......+ +.|.++|+.+...++++-...+.-
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccc------------------CCCCccCCCchhhh-hHHHHHHHHHHHHHHHHhcCCc
Q 041114 95 IDKL------------------CPRAYCSKSCKSSY-KFRKQVAKKLRDVRTLIGEGVF 134 (680)
Q Consensus 95 ~~~~------------------~~~~~~~~~~~~~~-~~~~~i~~~~~~v~~~~~~~~~ 134 (680)
..+. .+..-....+.... ..+.+|.+.+++|+.+...-+|
T Consensus 659 k~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~~ 717 (717)
T PF10168_consen 659 KKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKIVNF 717 (717)
T ss_pred HHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 97
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=35.34 E-value=2.4e+02 Score=22.77 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 041114 35 VAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRR 90 (680)
Q Consensus 35 ~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~ 90 (680)
+.+++++++.++...++++..++.- ..++..-+.+.+++..|++.-.+.
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i-------~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPI-------TKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666633333323322 344444555555555555544444
No 98
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=30.64 E-value=33 Score=31.86 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHHhh---hccccceeeeccccc
Q 041114 155 VEGLQSQLKQVWRCLV---EESIGIIGLYGMGSV 185 (680)
Q Consensus 155 v~gr~~~~~~i~~~L~---~~~~~vi~i~GmgGi 185 (680)
++||+++++++...+. ....+.+-|+|..|+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~ 35 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGS 35 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 5799999999999993 345678889999987
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=28.09 E-value=45 Score=20.36 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=7.1
Q ss_pred CCCCEEeccCC
Q 041114 441 VNLKCVNLEWA 451 (680)
Q Consensus 441 ~~Lr~L~L~~~ 451 (680)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 35666777666
No 100
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.59 E-value=2.7e+02 Score=21.03 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 041114 31 LQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRR 90 (680)
Q Consensus 31 ~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~ 90 (680)
+..++..|+.++..++.....+..++.+..--.....+.|..+-.++.++..+.+.+.+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~ 61 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788777777666666666544333344667888888888877777666443
No 101
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=9.5e+02 Score=26.62 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041114 36 AALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSKE 94 (680)
Q Consensus 36 ~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~~ 94 (680)
..+.+....|+...++-.+++.+++++.....+....--++..++.|.-|++......-
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55667777788888888888999988887767777777789999999999888776443
No 102
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=25.11 E-value=7e+02 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041114 32 QDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSK 93 (680)
Q Consensus 32 ~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~ 93 (680)
+++++++..+|+++-.. +..-.++-....+..+.||.+-+.+..-+.....+...
T Consensus 91 keelqkl~~eLe~vLs~-------~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~ 145 (268)
T PF11802_consen 91 KEELQKLISELEMVLST-------VQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKN 145 (268)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444 33222222223567788999888888777666666543
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=24.78 E-value=89 Score=37.21 Aligned_cols=74 Identities=22% Similarity=0.162 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHHhhhccccceeeeccccceecCccccCCCccHHHHHHHHHH-----HhCCChhHHHHHHHHhccCCC
Q 041114 155 VEGLQSQLKQVWRCLVEESIGIIGLYGMGSVEKVGEETLDSHHDILELAQTVTK-----ECGGSPLALITIGRAMAYKKK 229 (680)
Q Consensus 155 v~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi~~~~~~~~~~~~~l~~~~~~I~~-----kc~GlPLai~~lg~~L~~k~~ 229 (680)
++||+++++.+++.|......-+-++|-.|+ | .+.-.+.++..|+. ...|.++.-.-+++.+++.+.
T Consensus 181 ~igr~~ei~~~~~~L~r~~~~n~lL~G~pGv---G-----KTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~ 252 (821)
T CHL00095 181 VIGREKEIERVIQILGRRTKNNPILIGEPGV---G-----KTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKY 252 (821)
T ss_pred CCCcHHHHHHHHHHHcccccCCeEEECCCCC---C-----HHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCC
Confidence 5799999999999997644444458888776 1 12233455555543 233455544555666665555
Q ss_pred HHHHHHH
Q 041114 230 PEEWRYA 236 (680)
Q Consensus 230 ~~~W~~~ 236 (680)
..+|+.-
T Consensus 253 ~ge~e~r 259 (821)
T CHL00095 253 RGEFEER 259 (821)
T ss_pred ccHHHHH
Confidence 5566553
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.64 E-value=5e+02 Score=25.56 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 33 DNVAALAIELAKLIAAKNNLITRVLDAERQQL---------RRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 33 ~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~---------~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
..+++++.....++.-.+++..++++++.++. .-...+..|=++...+.+++.++.++..
T Consensus 52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555666665542 2234456677888888888888888754
No 105
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.60 E-value=6.8e+02 Score=24.57 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=60.5
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSK 93 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~ 93 (680)
+.+-..-+.++-+++...-.++..+.++|-...+....+...+.+|+..|.+.+..+.--+ ..-.|.|+++|.|+.
T Consensus 80 iNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~----sqQ~ELE~~L~~lE~ 155 (254)
T KOG2196|consen 80 INKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFIL----SQQQELEDLLDPLET 155 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 5666667777888888888999999999988888888888888889888877555554333 334677899999887
Q ss_pred Hhc
Q 041114 94 EID 96 (680)
Q Consensus 94 ~~~ 96 (680)
...
T Consensus 156 k~~ 158 (254)
T KOG2196|consen 156 KLE 158 (254)
T ss_pred HHh
Confidence 664
No 106
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.50 E-value=3.4e+02 Score=21.11 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCccCCCchhhhhHHHHHHHHHHHHHHHH
Q 041114 68 DQVQVWLSRVEAVKTETDELIRRSSKEIDKLCPRAYCSKSCKSSYKFRKQVAKKLRDVRTLI 129 (680)
Q Consensus 68 ~~v~~Wl~~v~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~ 129 (680)
+.=+.=++++.....+|+++++..+.+++.. +...+..+-.+++....++..+.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~--------p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSL--------PPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999999999999998741 23445666666776666666554
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.58 E-value=4.4e+02 Score=22.02 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041114 27 CTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSK 93 (680)
Q Consensus 27 ~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~ 93 (680)
-+..+..+.+.+..+++.+++.++.+...+..+...+.. .+....=.+.+++-.-+++.-+++...
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~-~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAGED-AEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCC-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999998888887666533 344444445555544444444444433
No 108
>PHA01750 hypothetical protein
Probab=23.52 E-value=2.6e+02 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 041114 34 NVAALAIELAKLI 46 (680)
Q Consensus 34 ~~~~L~~~l~~l~ 46 (680)
++.+|+.+++.++
T Consensus 43 ELdNL~~ei~~~k 55 (75)
T PHA01750 43 ELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 109
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=21.84 E-value=1e+03 Score=25.57 Aligned_cols=80 Identities=9% Similarity=0.043 Sum_probs=56.1
Q ss_pred hhhhhhhhhcccc--ccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 041114 14 FNRCLDCFLGKAA--CTRNLQDNVAALAIELAKLI--AAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIR 89 (680)
Q Consensus 14 ~~~l~~~~~~~~~--~~~~~~~~~~~L~~~l~~l~--a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld 89 (680)
++++-..-..+.. +...-+++.++..+++..-+ +...-+.+.+++|-.++.=-.++.+.-+.+-.+.-.++|+++|
T Consensus 267 L~~lH~leqe~L~~~L~l~qEE~~aKa~Rqla~~~R~eLh~if~~qi~~ai~~GeL~~e~Ak~Ll~~y~~~Q~~vEelMD 346 (429)
T PF12297_consen 267 LRKLHGLEQEHLRRSLLLQQEEDFAKARRQLAVFRRVELHEIFFEQIKSAIFKGELKPEAAKSLLQDYSKIQENVEELMD 346 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333 44456677777777765443 2334466678999988865588999999999999999999999
Q ss_pred HhHH
Q 041114 90 RSSK 93 (680)
Q Consensus 90 ~~~~ 93 (680)
.+..
T Consensus 347 ~~qA 350 (429)
T PF12297_consen 347 FFQA 350 (429)
T ss_pred HHHH
Confidence 9855
No 110
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.69 E-value=2.3e+02 Score=24.89 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=22.5
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVK 81 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~ 81 (680)
-..|...+.+.|.=..++..++..+...+..|+.-...++..+......-......++..+++.+.+.
T Consensus 43 ~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~ 110 (133)
T PF06148_consen 43 KNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELR 110 (133)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788887788888888888888887777666666677665544444566666666665544
No 111
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.52 E-value=9e+02 Score=24.92 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 30 NLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 30 ~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
..+.+.+.|+..+..+..--..++-.+++....-.+-.+..+.-.+++.++..=...+.|+|.
T Consensus 124 k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 124 KTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444443333333334444333222244555566666665555555666654
No 112
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=21.11 E-value=5.7e+02 Score=27.28 Aligned_cols=81 Identities=10% Similarity=0.097 Sum_probs=56.4
Q ss_pred hhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 041114 15 NRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSKE 94 (680)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~~ 94 (680)
+.|...+.-=..++-...+++..+..+|++-+.....-.+.++....-.....+..+.-|.++...+.|-.+.++.....
T Consensus 489 Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~~ 568 (583)
T KOG3809|consen 489 QDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNEQELQNEQAATFGASEPLYNILANLQKEINDTKEEISKARGR 568 (583)
T ss_pred HHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455567888899999999988887776666666655555556777888888888888888887775544
Q ss_pred h
Q 041114 95 I 95 (680)
Q Consensus 95 ~ 95 (680)
+
T Consensus 569 I 569 (583)
T KOG3809|consen 569 I 569 (583)
T ss_pred H
Confidence 3
No 113
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=21.00 E-value=5.3e+02 Score=22.39 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 041114 25 AACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEA 79 (680)
Q Consensus 25 ~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~ 79 (680)
|.....++.+.+.|......+...-......++.....-.. .+.|++|.+.+..
T Consensus 46 ~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKE-iGDveNWa~~iE~ 99 (121)
T PF06320_consen 46 YENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKE-IGDVENWAEMIER 99 (121)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence 33444444444555555444444433333333333222223 4556666654443
No 114
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=3.7e+02 Score=26.51 Aligned_cols=57 Identities=19% Similarity=0.123 Sum_probs=30.5
Q ss_pred ceeecchhhhhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041114 5 FQITCDDAFFNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAER 61 (680)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~ 61 (680)
+++.+..++.........+.-+.-.......-+|..++.++|+-..+.+.++.+.+.
T Consensus 22 ~s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~ 78 (247)
T COG3879 22 LSISLAMLLAGVMLAAVFQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLEN 78 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554555555555555544444444446666666666665555555555544
No 115
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.45 E-value=6.2e+02 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 041114 118 VAKKLRDVRTLIGE 131 (680)
Q Consensus 118 i~~~~~~v~~~~~~ 131 (680)
.....+.|.+++..
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555444
No 116
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.24 E-value=1.8e+02 Score=29.95 Aligned_cols=22 Identities=5% Similarity=-0.135 Sum_probs=11.2
Q ss_pred hhhhhhhhhccccccccHHHHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNV 35 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~ 35 (680)
.+++......|+..+....+.+
T Consensus 216 ~eklR~r~eeeme~~~aeq~sl 237 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESL 237 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444444
Done!