Query 041114
Match_columns 680
No_of_seqs 392 out of 4326
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 6.2E-25 2.1E-29 244.7 7.6 143 197-353 313-472 (549)
2 4fcg_A Uncharacterized protein 99.8 1.2E-19 4E-24 188.9 15.8 228 403-664 91-319 (328)
3 4fcg_A Uncharacterized protein 99.8 2.5E-19 8.5E-24 186.4 15.1 212 377-629 81-309 (328)
4 3sfz_A APAF-1, apoptotic pepti 99.8 1.1E-19 3.6E-24 223.2 11.5 140 198-352 305-452 (1249)
5 2id5_A Lingo-1, leucine rich r 99.8 1.2E-17 4E-22 183.4 20.2 274 358-641 14-315 (477)
6 3o6n_A APL1; leucine-rich repe 99.8 4.6E-18 1.6E-22 181.5 15.4 257 376-653 44-349 (390)
7 4fmz_A Internalin; leucine ric 99.8 2.2E-17 7.5E-22 173.3 19.6 261 358-637 47-326 (347)
8 3oja_B Anopheles plasmodium-re 99.7 7.2E-18 2.5E-22 190.3 15.4 258 376-654 74-356 (597)
9 4fmz_A Internalin; leucine ric 99.7 4.4E-17 1.5E-21 171.0 17.2 163 371-547 38-209 (347)
10 1xku_A Decorin; proteoglycan, 99.7 9.4E-17 3.2E-21 167.2 17.7 215 402-640 61-281 (330)
11 1o6v_A Internalin A; bacterial 99.7 1.8E-16 6.1E-21 173.4 19.2 263 358-638 49-347 (466)
12 3o6n_A APL1; leucine-rich repe 99.7 5.7E-17 1.9E-21 173.1 14.8 227 402-640 54-313 (390)
13 2ft3_A Biglycan; proteoglycan, 99.7 9.5E-17 3.2E-21 167.4 15.5 209 405-639 66-281 (332)
14 3vq2_A TLR4, TOLL-like recepto 99.7 2.7E-16 9.1E-21 178.0 19.5 138 358-498 14-165 (606)
15 3zyj_A Leucine-rich repeat-con 99.7 2.1E-16 7.3E-21 171.4 17.7 227 359-605 47-289 (440)
16 1xku_A Decorin; proteoglycan, 99.7 5.3E-16 1.8E-20 161.5 19.3 251 358-632 34-304 (330)
17 2id5_A Lingo-1, leucine rich r 99.7 2.9E-16 9.8E-21 172.3 17.9 248 380-637 14-287 (477)
18 3j0a_A TOLL-like receptor 5; m 99.7 1.4E-15 4.7E-20 178.6 24.2 138 357-498 6-160 (844)
19 3v47_A TOLL-like receptor 5B a 99.7 4.8E-16 1.7E-20 169.4 18.9 276 357-651 12-403 (455)
20 3oja_B Anopheles plasmodium-re 99.7 1.1E-16 3.7E-21 180.6 13.7 261 375-653 49-334 (597)
21 1vt4_I APAF-1 related killer D 99.7 7.7E-17 2.6E-21 182.9 12.3 113 208-345 321-436 (1221)
22 1ogq_A PGIP-2, polygalacturona 99.7 1.9E-16 6.7E-21 163.5 13.7 240 377-639 50-309 (313)
23 2z66_A Variable lymphocyte rec 99.7 2.8E-16 9.6E-21 161.8 14.8 237 359-632 11-259 (306)
24 1ziw_A TOLL-like receptor 3; i 99.7 4.7E-16 1.6E-20 178.5 18.0 163 358-523 7-182 (680)
25 1o6v_A Internalin A; bacterial 99.7 1E-15 3.4E-20 167.4 19.7 257 359-638 116-391 (466)
26 3zyi_A Leucine-rich repeat-con 99.7 8.3E-16 2.8E-20 167.4 18.8 229 358-606 57-301 (452)
27 2z7x_B TOLL-like receptor 1, v 99.7 5.5E-16 1.9E-20 172.0 16.8 133 358-496 3-148 (520)
28 2ft3_A Biglycan; proteoglycan, 99.7 3.1E-16 1E-20 163.5 13.8 251 358-633 36-306 (332)
29 3zyi_A Leucine-rich repeat-con 99.7 5.8E-16 2E-20 168.6 16.5 233 379-631 56-300 (452)
30 3t6q_A CD180 antigen; protein- 99.7 1.5E-15 5.2E-20 171.8 20.3 137 358-497 15-164 (606)
31 4ecn_A Leucine-rich repeat pro 99.7 4.5E-16 1.5E-20 180.4 15.4 271 374-654 512-838 (876)
32 2z81_A CD282 antigen, TOLL-lik 99.7 5.2E-16 1.8E-20 173.4 14.7 134 360-497 10-159 (549)
33 3zyj_A Leucine-rich repeat-con 99.7 1.4E-15 4.6E-20 165.1 17.2 216 379-639 45-272 (440)
34 3v47_A TOLL-like receptor 5B a 99.6 2.5E-15 8.7E-20 163.6 18.8 259 359-633 34-407 (455)
35 3t6q_A CD180 antigen; protein- 99.6 1.1E-15 3.8E-20 172.9 16.1 237 378-631 255-510 (606)
36 3bz5_A Internalin-J, INLJ; leu 99.6 1.7E-15 5.7E-20 164.7 16.8 170 358-547 45-222 (457)
37 1ogq_A PGIP-2, polygalacturona 99.6 2.5E-16 8.7E-21 162.6 9.4 219 402-640 59-287 (313)
38 2z80_A TOLL-like receptor 2, v 99.6 7.4E-16 2.5E-20 162.0 13.0 245 360-641 36-296 (353)
39 2z7x_B TOLL-like receptor 1, v 99.6 4.6E-15 1.6E-19 164.5 19.7 133 380-523 3-149 (520)
40 4eco_A Uncharacterized protein 99.6 5.9E-16 2E-20 175.7 12.5 82 570-654 511-598 (636)
41 1z6t_A APAF-1, apoptotic prote 99.6 1.1E-15 3.6E-20 172.4 14.5 135 200-349 307-449 (591)
42 2z63_A TOLL-like receptor 4, v 99.6 3.2E-15 1.1E-19 167.8 18.3 71 403-476 86-159 (570)
43 4ecn_A Leucine-rich repeat pro 99.6 1.3E-15 4.4E-20 176.6 15.4 145 373-523 444-630 (876)
44 3vq2_A TLR4, TOLL-like recepto 99.6 1.6E-15 5.6E-20 171.5 14.0 249 373-643 281-542 (606)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.2E-15 2.1E-19 165.1 18.2 133 358-496 34-179 (562)
46 2z80_A TOLL-like receptor 2, v 99.6 2.1E-15 7.3E-20 158.5 13.6 187 404-611 42-237 (353)
47 1ozn_A Reticulon 4 receptor; N 99.6 7.6E-15 2.6E-19 149.3 17.0 213 360-605 16-235 (285)
48 3o53_A Protein LRIM1, AGAP0063 99.6 9.3E-16 3.2E-20 158.7 10.3 220 407-653 24-244 (317)
49 3bz5_A Internalin-J, INLJ; leu 99.6 4.4E-15 1.5E-19 161.4 15.7 157 373-547 38-201 (457)
50 2z63_A TOLL-like receptor 4, v 99.6 7.2E-15 2.5E-19 164.9 18.0 138 357-497 9-160 (570)
51 3rgz_A Protein brassinosteroid 99.6 2.5E-15 8.5E-20 174.6 14.4 243 402-653 403-714 (768)
52 3rgz_A Protein brassinosteroid 99.6 3.8E-15 1.3E-19 173.0 14.7 257 375-639 267-556 (768)
53 4eco_A Uncharacterized protein 99.6 2.8E-15 9.6E-20 170.2 12.7 263 375-653 247-576 (636)
54 1h6u_A Internalin H; cell adhe 99.6 1.2E-14 4.1E-19 149.6 15.7 188 375-606 39-228 (308)
55 2xwt_C Thyrotropin receptor; s 99.6 4.8E-15 1.6E-19 146.7 11.5 195 418-634 32-239 (239)
56 1h6u_A Internalin H; cell adhe 99.6 5.5E-15 1.9E-19 152.1 12.3 198 413-641 37-236 (308)
57 1ozn_A Reticulon 4 receptor; N 99.6 8.3E-15 2.8E-19 149.1 13.4 206 406-632 24-236 (285)
58 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.1E-14 2.1E-18 157.1 21.4 138 378-523 32-180 (562)
59 2z66_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 150.4 13.4 212 405-637 19-238 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.6 6.5E-14 2.2E-18 157.0 20.3 243 357-653 42-291 (622)
61 4g8a_A TOLL-like receptor 4; l 99.6 3.1E-14 1E-18 161.7 17.7 115 359-476 35-158 (635)
62 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5.2E-19 143.0 13.3 206 367-607 23-238 (239)
63 2z81_A CD282 antigen, TOLL-lik 99.6 2.2E-14 7.7E-19 160.1 15.1 118 359-477 30-159 (549)
64 3j0a_A TOLL-like receptor 5; m 99.6 7.2E-14 2.5E-18 164.0 19.8 269 380-654 7-373 (844)
65 1wwl_A Monocyte differentiatio 99.5 2.7E-14 9.2E-19 147.3 13.8 197 376-604 94-305 (312)
66 3oja_A Leucine-rich immune mol 99.5 1.1E-14 3.8E-19 159.6 11.5 201 417-643 34-235 (487)
67 4ay9_X Follicle-stimulating ho 99.5 3.8E-14 1.3E-18 148.7 13.8 214 417-652 30-252 (350)
68 1ziw_A TOLL-like receptor 3; i 99.5 9.2E-14 3.1E-18 159.4 17.7 213 418-640 382-602 (680)
69 3qfl_A MLA10; coiled-coil, (CC 99.5 3.5E-14 1.2E-18 121.6 10.3 81 8-97 2-84 (115)
70 1p9a_G Platelet glycoprotein I 99.5 5.4E-14 1.8E-18 143.3 13.1 68 403-477 20-88 (290)
71 2z62_A TOLL-like receptor 4, v 99.5 1.6E-13 5.6E-18 138.7 16.6 213 359-605 11-234 (276)
72 4ay9_X Follicle-stimulating ho 99.5 4.5E-14 1.5E-18 148.1 12.2 233 358-627 12-252 (350)
73 1wwl_A Monocyte differentiatio 99.5 7.3E-15 2.5E-19 151.6 6.0 198 415-632 93-307 (312)
74 2o6q_A Variable lymphocyte rec 99.5 1.7E-13 6E-18 138.1 16.0 163 407-606 51-216 (270)
75 3rfs_A Internalin B, repeat mo 99.5 6.6E-14 2.3E-18 141.3 12.4 200 374-642 38-243 (272)
76 3oja_A Leucine-rich immune mol 99.5 5.3E-14 1.8E-18 154.2 12.7 77 377-477 34-110 (487)
77 2z62_A TOLL-like receptor 4, v 99.5 6.8E-14 2.3E-18 141.6 12.3 206 405-632 19-235 (276)
78 2o6q_A Variable lymphocyte rec 99.5 2.1E-13 7.1E-18 137.5 15.3 177 417-632 37-216 (270)
79 3o53_A Protein LRIM1, AGAP0063 99.5 6.5E-14 2.2E-18 144.8 11.8 233 377-639 34-280 (317)
80 2ast_B S-phase kinase-associat 99.5 1.2E-14 4.1E-19 151.5 5.9 188 402-605 79-282 (336)
81 3g06_A SSPH2 (leucine-rich rep 99.5 2.5E-13 8.4E-18 152.3 16.4 226 377-654 40-272 (622)
82 1jl5_A Outer protein YOPM; leu 99.5 6.5E-13 2.2E-17 144.1 17.8 256 364-653 140-426 (454)
83 1p9a_G Platelet glycoprotein I 99.5 4.9E-13 1.7E-17 136.2 15.4 186 377-605 10-205 (290)
84 3rfs_A Internalin B, repeat mo 99.5 2.7E-13 9.2E-18 136.8 13.2 180 413-634 37-218 (272)
85 1h6t_A Internalin B; cell adhe 99.5 4.1E-13 1.4E-17 136.9 13.5 168 413-606 42-211 (291)
86 2ast_B S-phase kinase-associat 99.4 1.1E-13 3.7E-18 144.3 8.7 205 413-631 64-282 (336)
87 1jl5_A Outer protein YOPM; leu 99.4 3.5E-13 1.2E-17 146.2 12.7 155 417-605 91-247 (454)
88 1m9s_A Internalin B; cell inva 99.4 5.9E-13 2E-17 149.0 11.5 167 414-606 40-208 (605)
89 4glp_A Monocyte differentiatio 99.4 1.3E-12 4.5E-17 134.4 13.1 173 414-604 114-303 (310)
90 2ca6_A RAN GTPase-activating p 99.4 2.2E-13 7.6E-18 144.9 5.0 229 376-632 31-314 (386)
91 1h6t_A Internalin B; cell adhe 99.4 3.9E-12 1.3E-16 129.6 13.9 167 374-583 43-211 (291)
92 3m19_A Variable lymphocyte rec 99.3 9.5E-12 3.2E-16 123.8 14.0 164 403-606 24-190 (251)
93 1m9s_A Internalin B; cell inva 99.3 5.2E-12 1.8E-16 141.3 13.0 168 374-584 40-209 (605)
94 4ezg_A Putative uncharacterize 99.3 3.8E-12 1.3E-16 121.6 9.9 148 413-605 40-191 (197)
95 3m19_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 120.9 14.0 173 359-584 18-191 (251)
96 4glp_A Monocyte differentiatio 99.3 4.4E-12 1.5E-16 130.5 8.5 201 415-632 89-305 (310)
97 1xeu_A Internalin C; cellular 99.3 5E-12 1.7E-16 126.7 7.7 155 403-606 29-183 (263)
98 2ca6_A RAN GTPase-activating p 99.3 3.5E-12 1.2E-16 135.6 6.9 222 405-636 21-288 (386)
99 2o6s_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 115.7 12.3 148 416-605 27-175 (208)
100 4g8a_A TOLL-like receptor 4; l 99.2 9.9E-11 3.4E-15 132.7 15.7 199 414-631 368-577 (635)
101 3ogk_B Coronatine-insensitive 99.2 1.6E-11 5.3E-16 138.3 8.3 83 570-654 434-524 (592)
102 3goz_A Leucine-rich repeat-con 99.2 3.6E-11 1.2E-15 126.6 10.3 231 377-632 22-295 (362)
103 4ezg_A Putative uncharacterize 99.2 1.1E-10 3.9E-15 111.3 12.3 147 374-583 41-192 (197)
104 1xeu_A Internalin C; cellular 99.2 9.2E-11 3.1E-15 117.4 11.9 132 402-583 50-183 (263)
105 3cvr_A Invasion plasmid antige 99.1 7.3E-11 2.5E-15 130.7 10.1 176 402-611 68-246 (571)
106 1dce_A Protein (RAB geranylger 99.1 1.8E-12 6.1E-17 144.3 -3.1 203 414-651 346-565 (567)
107 3ogk_B Coronatine-insensitive 99.1 1.9E-11 6.5E-16 137.6 5.2 127 413-546 188-327 (592)
108 3cvr_A Invasion plasmid antige 99.1 1.8E-10 6E-15 127.6 12.5 174 418-632 60-241 (571)
109 2o6s_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 108.6 12.3 176 419-642 9-186 (208)
110 3e6j_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 110.8 12.0 131 417-584 40-171 (229)
111 2v9t_B SLIT homolog 2 protein 99.1 3.1E-10 1.1E-14 110.3 11.3 143 359-547 15-162 (220)
112 3goz_A Leucine-rich repeat-con 99.1 2E-11 6.9E-16 128.5 1.6 214 407-632 12-264 (362)
113 2xot_A Amphoterin-induced prot 99.1 2.6E-10 8.9E-15 119.9 9.9 86 407-494 53-144 (361)
114 1z7x_W Ribonuclease inhibitor; 99.1 3.4E-11 1.2E-15 131.0 2.9 204 418-632 86-324 (461)
115 2v9t_B SLIT homolog 2 protein 99.1 6.9E-10 2.4E-14 107.8 11.6 68 404-476 22-90 (220)
116 3e6j_A Variable lymphocyte rec 99.1 6.2E-10 2.1E-14 108.9 11.1 148 419-606 21-170 (229)
117 4b8c_D Glucose-repressible alc 99.0 8.1E-11 2.8E-15 135.0 5.2 143 377-548 173-327 (727)
118 2v70_A SLIT-2, SLIT homolog 2 99.0 7.7E-10 2.6E-14 107.5 10.6 126 418-583 33-164 (220)
119 2p1m_B Transport inhibitor res 99.0 2.2E-10 7.4E-15 129.0 7.5 235 413-655 207-518 (594)
120 2p1m_B Transport inhibitor res 99.0 4.1E-11 1.4E-15 134.9 1.3 35 570-605 287-324 (594)
121 2xot_A Amphoterin-induced prot 99.0 5.4E-10 1.9E-14 117.4 9.2 159 406-605 31-199 (361)
122 1z7x_W Ribonuclease inhibitor; 99.0 1.3E-10 4.3E-15 126.6 3.4 245 375-635 54-354 (461)
123 3sb4_A Hypothetical leucine ri 98.9 6.4E-09 2.2E-13 107.7 13.8 97 376-475 48-157 (329)
124 2v70_A SLIT-2, SLIT homolog 2 98.9 4.9E-09 1.7E-13 101.8 11.4 144 360-523 16-164 (220)
125 2ell_A Acidic leucine-rich nuc 98.9 2.4E-09 8.1E-14 99.2 7.1 132 415-584 22-159 (168)
126 2je0_A Acidic leucine-rich nuc 98.8 2.9E-09 9.9E-14 96.4 6.5 128 415-580 15-148 (149)
127 2ell_A Acidic leucine-rich nuc 98.8 1.1E-08 3.9E-13 94.5 8.7 128 377-523 24-158 (168)
128 1w8a_A SLIT protein; signaling 98.8 1.8E-08 6.2E-13 95.5 9.6 119 360-497 13-137 (192)
129 1a9n_A U2A', U2A'; complex (nu 98.8 1E-08 3.5E-13 95.7 7.7 128 376-523 18-151 (176)
130 2wfh_A SLIT homolog 2 protein 98.8 1.7E-08 5.8E-13 95.7 9.2 102 417-547 31-136 (193)
131 2wfh_A SLIT homolog 2 protein 98.8 2.9E-08 9.9E-13 94.1 10.7 120 359-498 14-138 (193)
132 2je0_A Acidic leucine-rich nuc 98.8 1.3E-08 4.5E-13 92.0 7.6 125 377-520 17-148 (149)
133 1dce_A Protein (RAB geranylger 98.7 1.5E-08 5E-13 112.7 9.2 78 413-494 459-541 (567)
134 1a9n_A U2A', U2A'; complex (nu 98.7 1.8E-08 6.2E-13 94.0 7.4 119 358-497 22-151 (176)
135 1ds9_A Outer arm dynein; leuci 98.7 6.7E-10 2.3E-14 106.0 -2.4 110 406-547 38-150 (198)
136 1w8a_A SLIT protein; signaling 98.7 4.9E-08 1.7E-12 92.5 9.7 41 532-583 97-137 (192)
137 2r9u_A Variable lymphocyte rec 98.7 4.7E-08 1.6E-12 90.9 9.5 69 407-477 47-116 (174)
138 2o6r_A Variable lymphocyte rec 98.7 4.6E-08 1.6E-12 91.2 9.5 119 360-497 12-135 (177)
139 1ds9_A Outer arm dynein; leuci 98.7 1.6E-09 5.4E-14 103.4 -1.1 144 418-601 24-180 (198)
140 2o6r_A Variable lymphocyte rec 98.7 7.5E-08 2.6E-12 89.8 10.5 102 358-477 31-135 (177)
141 3g39_A Variable lymphocyte rec 98.6 8.9E-08 3E-12 88.7 9.4 68 407-476 44-112 (170)
142 3sb4_A Hypothetical leucine ri 98.6 1.2E-07 4E-12 98.1 9.9 214 416-651 48-326 (329)
143 4b8c_D Glucose-repressible alc 98.5 7.8E-08 2.7E-12 110.2 7.8 98 376-477 223-327 (727)
144 2r9u_A Variable lymphocyte rec 98.5 1.8E-07 6E-12 87.0 7.6 88 406-498 25-117 (174)
145 3g39_A Variable lymphocyte rec 98.5 2.6E-07 8.8E-12 85.5 7.6 86 407-497 23-113 (170)
146 4fdw_A Leucine rich hypothetic 98.4 4.1E-06 1.4E-10 88.7 17.1 227 404-658 145-382 (401)
147 4fdw_A Leucine rich hypothetic 98.3 1E-05 3.4E-10 85.7 15.2 181 402-605 165-355 (401)
148 2ifg_A High affinity nerve gro 98.3 1.9E-06 6.6E-11 89.5 9.2 67 407-476 46-113 (347)
149 2ifg_A High affinity nerve gro 98.2 1.7E-06 5.7E-11 90.0 8.3 92 404-499 20-116 (347)
150 3e4g_A ATP synthase subunit S, 98.2 6.1E-07 2.1E-11 82.4 3.0 89 513-610 62-154 (176)
151 3e4g_A ATP synthase subunit S, 98.1 5.2E-06 1.8E-10 76.2 6.8 41 512-552 114-154 (176)
152 3un9_A NLR family member X1; l 97.9 8.3E-06 2.8E-10 85.5 5.3 107 377-496 72-193 (372)
153 2ra8_A Uncharacterized protein 97.9 9.7E-06 3.3E-10 84.4 5.5 61 413-477 135-204 (362)
154 4fs7_A Uncharacterized protein 97.6 0.00089 3.1E-08 70.6 15.1 66 569-641 294-361 (394)
155 2ra8_A Uncharacterized protein 97.6 4E-05 1.4E-09 79.7 4.4 168 432-632 130-318 (362)
156 3un9_A NLR family member X1; l 97.4 0.00014 4.6E-09 76.2 5.9 83 377-477 101-194 (372)
157 3rw6_A Nuclear RNA export fact 97.4 0.0002 6.9E-09 70.6 6.3 61 414-478 167-232 (267)
158 4fs7_A Uncharacterized protein 97.1 0.0017 6E-08 68.3 11.2 64 408-475 153-217 (394)
159 1io0_A Tropomodulin; LRR prote 97.1 0.00095 3.2E-08 62.2 7.4 64 412-477 31-104 (185)
160 4gt6_A Cell surface protein; l 97.1 0.013 4.6E-07 61.4 17.3 65 405-473 102-167 (394)
161 4gt6_A Cell surface protein; l 97.0 0.0037 1.2E-07 65.8 12.2 71 403-475 73-146 (394)
162 1io0_A Tropomodulin; LRR prote 96.7 0.0024 8.1E-08 59.4 6.5 105 377-496 36-161 (185)
163 3rw6_A Nuclear RNA export fact 96.6 0.0024 8.1E-08 62.9 6.1 81 377-474 170-259 (267)
164 4h09_A Hypothetical leucine ri 96.2 0.21 7.2E-06 51.7 18.6 63 405-473 57-120 (379)
165 3rfe_A Platelet glycoprotein I 95.0 0.023 7.9E-07 49.2 4.7 54 420-477 11-66 (130)
166 3rfe_A Platelet glycoprotein I 90.5 0.21 7.2E-06 43.0 4.1 35 417-452 31-66 (130)
167 4h09_A Hypothetical leucine ri 89.3 0.57 1.9E-05 48.4 7.0 88 403-493 249-340 (379)
168 1pgv_A TMD-1, tropomodulin TMD 87.8 1.2 4E-05 41.2 7.3 63 413-477 37-109 (197)
169 2qen_A Walker-type ATPase; unk 81.1 9.3 0.00032 38.2 11.4 118 201-344 226-347 (350)
170 2fna_A Conserved hypothetical 75.4 18 0.00062 36.1 11.5 117 204-344 233-355 (357)
171 1pgv_A TMD-1, tropomodulin TMD 68.8 3.7 0.00013 37.8 3.9 85 437-522 37-136 (197)
172 3mtu_A Tropomyosin alpha-1 cha 63.3 8.8 0.0003 29.0 4.3 31 55-85 38-68 (75)
173 2akf_A Coronin-1A; coiled coil 60.5 19 0.00066 21.1 4.3 24 37-60 3-26 (32)
174 1hqc_A RUVB; extended AAA-ATPa 53.4 11 0.00038 37.4 4.5 35 295-329 288-324 (324)
175 1vcs_A Vesicle transport throu 51.2 68 0.0023 25.7 8.0 53 71-131 37-89 (102)
176 2lw1_A ABC transporter ATP-bin 44.3 1E+02 0.0035 23.9 7.8 65 27-92 16-80 (89)
177 1w5s_A Origin recognition comp 40.8 41 0.0014 34.4 6.7 122 201-341 240-387 (412)
178 3ro3_B Minsc, peptide of prote 40.5 17 0.00057 19.7 1.7 14 67-80 7-20 (22)
179 2qen_A Walker-type ATPase; unk 33.4 28 0.00096 34.6 3.8 31 153-185 12-42 (350)
180 1ic2_A Tropomyosin alpha chain 32.1 1.6E+02 0.0056 22.2 9.3 63 30-92 3-65 (81)
181 2qyw_A Vesicle transport throu 28.3 2.3E+02 0.0077 22.6 11.6 55 68-130 45-99 (102)
182 3tnu_A Keratin, type I cytoske 27.6 2.7E+02 0.0092 23.2 8.8 36 29-64 41-76 (131)
183 2jee_A YIIU; FTSZ, septum, coi 25.8 2E+02 0.007 21.8 6.3 71 14-86 8-80 (81)
184 2fna_A Conserved hypothetical 25.2 40 0.0014 33.5 3.3 29 153-185 13-41 (357)
185 1w5s_A Origin recognition comp 24.0 25 0.00086 36.0 1.5 33 153-185 22-63 (412)
186 3tnu_B Keratin, type II cytosk 23.7 3.1E+02 0.011 22.7 8.9 35 30-64 40-74 (129)
187 1jbk_A CLPB protein; beta barr 23.7 48 0.0016 29.1 3.2 32 154-185 23-54 (195)
188 2lf0_A Uncharacterized protein 23.2 2E+02 0.0068 23.4 6.1 54 38-93 8-61 (123)
189 1wt6_A Myotonin-protein kinase 22.5 2.5E+02 0.0087 21.2 6.3 30 36-65 27-56 (81)
190 3a7p_A Autophagy protein 16; c 21.4 2.6E+02 0.009 24.0 6.9 9 69-77 129-137 (152)
191 3u1c_A Tropomyosin alpha-1 cha 21.2 3.1E+02 0.011 21.7 9.3 63 30-92 6-68 (101)
192 3u59_A Tropomyosin beta chain; 20.3 3.2E+02 0.011 21.5 9.1 63 30-92 6-68 (101)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=6.2e-25 Score=244.68 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=114.9
Q ss_pred ccHHHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcCCchhHHHHHH
Q 041114 197 HDILELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSLQNDVIRSCFL 276 (680)
Q Consensus 197 ~~l~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~lk~cfl 276 (680)
+++++++++|+++|+|+||||+++|+.|+.+ + |+.+ +.+.. ..+... .+++.+++.+||++||+ ++|.||+
T Consensus 313 ~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~-~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~ 383 (549)
T 2a5y_B 313 EKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNN-KLESRG--LVGVECITPYSYKSLAM-ALQRCVE 383 (549)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHH-HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHH-Hhhccc--HHHHHHHHhcccccccH-HHHHHHh
Confidence 6678899999999999999999999999874 3 4443 44544 333221 23688999999999999 9999999
Q ss_pred -----------HhcccCCCcccChHHHHHHHHHc--CCcCCCC-hhhHHHHHHHHHHHHHHccccccc---CcccEEech
Q 041114 277 -----------YCCLYPEDFAILKRDLIDCWIGE--GFLDERD-SFSAQNQGYYIVGTLVHAWLLEEV---GDDKVKLHG 339 (680)
Q Consensus 277 -----------~~s~Fp~~~~i~~~~Li~~Wiae--g~i~~~~-~~~~~~~g~~~~~~L~~~~ll~~~---~~~~~~mhd 339 (680)
|||+||+++.|+ +++|+|+ ||+...+ ....++.++ ||++|+++||+++. ....|+|||
T Consensus 384 ~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 384 VLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp TSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred ccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeCh
Confidence 999999999999 8999999 9998844 666788888 99999999999986 345799999
Q ss_pred hHHHHHHHHHhhhh
Q 041114 340 VLHDMALWISCEIE 353 (680)
Q Consensus 340 l~~d~a~~i~~~~~ 353 (680)
++|++|++++.+++
T Consensus 459 lv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 459 IIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987743
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.2e-19 Score=188.91 Aligned_cols=228 Identities=18% Similarity=0.207 Sum_probs=156.1
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhh
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKEL 482 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l 482 (680)
+.+..+|+. +.++++|++|+|++| .+..+|..++++++|++|+|++| .+..+|.. ++++++|++|++++|.....+
T Consensus 91 n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 91 VPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp SCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEEEETTCCCC
T ss_pred CCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEECCCCCCcccc
Confidence 344456655 444666666666663 55566666666666666666666 56666665 666666666666665433322
Q ss_pred cCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCc
Q 041114 483 LGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTV 562 (680)
Q Consensus 483 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (680)
+. .+....+ ......+++|+.|+++++. +..++. .+..+++|++|+++++. +..++..
T Consensus 167 p~--~~~~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~lp~-~l~~l~~L~~L~L~~N~-l~~l~~~------ 224 (328)
T 4fcg_A 167 PE--PLASTDA-----------SGEHQGLVNLQSLRLEWTG-IRSLPA-SIANLQNLKSLKIRNSP-LSALGPA------ 224 (328)
T ss_dssp CS--CSEEEC------------CCCEEESTTCCEEEEEEEC-CCCCCG-GGGGCTTCCEEEEESSC-CCCCCGG------
T ss_pred Ch--hHhhccc-----------hhhhccCCCCCEEECcCCC-cCcchH-hhcCCCCCCEEEccCCC-CCcCchh------
Confidence 21 0000000 0001124588899998886 556664 68899999999999864 4444332
Q ss_pred cCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 563 LKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 563 l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
+..+++|+.|++++|.....+| .++.+++|++|++++|+....+|.. ++.+++|+.|++++|+.+..+|..+
T Consensus 225 -----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 225 -----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp -----GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred -----hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHH
Confidence 2678999999999998887776 4789999999999999888777653 4789999999999999999999887
Q ss_pred ccccCcceEEeccccccccCccC
Q 041114 642 NSALEHKIAIRGEAGWWGCLQWE 664 (680)
Q Consensus 642 ~~~l~~L~i~~~~~~~~~~l~w~ 664 (680)
.. +..|.+...+..+...+.+.
T Consensus 298 ~~-L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 298 AQ-LPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp GG-SCTTCEEECCGGGSCC----
T ss_pred hh-ccCceEEeCCHHHHHHHhhh
Confidence 76 89999999988877766654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.5e-19 Score=186.44 Aligned_cols=212 Identities=18% Similarity=0.216 Sum_probs=145.8
Q ss_pred cceEEEEeecccccccccC-CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEecc
Q 041114 377 ETVRRLSLMQNQIKILSEA-PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLE 449 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~-~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~ 449 (680)
..++.|.+.++.+..+|.. ..+++| ++.+..+|.. |.++++|++|+|++| .+..+|..+++|++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 3556666666666655543 223333 4555577776 789999999999995 888999999999999999999
Q ss_pred CCCCccccchhhhcC---------CCCCcEeeccCCcchhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEe
Q 041114 450 WARDLVTIPLEVISN---------FSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLI 520 (680)
Q Consensus 450 ~~~~l~~lP~~~i~~---------L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~ 520 (680)
+|..+..+|.. ++. +++|++|++++|. .. .++.....+++|+.|+++
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~--------------------l~---~lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG--------------------IR---SLPASIANLQNLKSLKIR 214 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC--------------------CC---CCCGGGGGCTTCCEEEEE
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCC--------------------cC---cchHhhcCCCCCCEEEcc
Confidence 98778889986 654 5666666665542 21 222222333467777777
Q ss_pred ccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCE
Q 041114 521 RFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKC 599 (680)
Q Consensus 521 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 599 (680)
++. +..++. .+..+++|+.|++++|.....++ .. +..+++|++|+|++|...+.+| .++.+++|++
T Consensus 215 ~N~-l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p-~~----------~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 215 NSP-LSALGP-AIHHLPKLEELDLRGCTALRNYP-PI----------FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp SSC-CCCCCG-GGGGCTTCCEEECTTCTTCCBCC-CC----------TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred CCC-CCcCch-hhccCCCCCEEECcCCcchhhhH-HH----------hcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 765 334443 57778888888888776655432 22 2567888888888888777766 5778888888
Q ss_pred EeEecCcchhHhhhcCCCCCCCcccccCcc
Q 041114 600 LSLFDCTAMEEIISAGKFVHTPEMMGNTMD 629 (680)
Q Consensus 600 L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~ 629 (680)
|+|++|+.+..+|.. ++.+++|+.+.+.
T Consensus 282 L~L~~n~~~~~iP~~--l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSL--IAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCCCCGG--GGGSCTTCEEECC
T ss_pred EeCCCCCchhhccHH--HhhccCceEEeCC
Confidence 888888877777653 3666666665544
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.79 E-value=1.1e-19 Score=223.25 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=119.3
Q ss_pred cHHHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccc-c----CChhhHHHHHHHhHhcCCchhHH
Q 041114 198 DILELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEF-A----GLVKEVYPLLKFSYDSLQNDVIR 272 (680)
Q Consensus 198 ~l~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~-~----~~~~~i~~~L~~Sy~~L~~~~lk 272 (680)
++.+++++|+++|+|+||||+++|+.|+.+. ..|..+++.+.. ..+.. . ...+.+..++.+||+.||+ ++|
T Consensus 305 ~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~ 380 (1249)
T 3sfz_A 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQN-KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIK 380 (1249)
T ss_dssp TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHS-CCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTH
T ss_pred hCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhh-hhhhhcccccccchHHHHHHHHHHHHhCCH-HHH
Confidence 4456799999999999999999999998843 579999999987 54432 1 1224699999999999999 899
Q ss_pred HHHHHhcccCCCcccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHcccccccCc---ccEEechhHHHHHHHHH
Q 041114 273 SCFLYCCLYPEDFAILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEVGD---DKVKLHGVLHDMALWIS 349 (680)
Q Consensus 273 ~cfl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~---~~~~mhdl~~d~a~~i~ 349 (680)
.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++.... ..|+|||++|++++..+
T Consensus 381 ~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~ 449 (1249)
T 3sfz_A 381 DYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKN 449 (1249)
T ss_dssp HHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHT
T ss_pred HHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhh
Confidence 999999999999999999999999765 4678899999999999998733 35999999999999987
Q ss_pred hhh
Q 041114 350 CEI 352 (680)
Q Consensus 350 ~~~ 352 (680)
.++
T Consensus 450 ~~~ 452 (1249)
T 3sfz_A 450 RSQ 452 (1249)
T ss_dssp GGG
T ss_pred hHH
Confidence 663
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=183.42 Aligned_cols=274 Identities=18% Similarity=0.212 Sum_probs=188.1
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+..+..+|... ..+++.|++.+|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++ +.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-Cc
Confidence 45566666777777532 36899999999999887542 445555 6677777666689999999999999 48
Q ss_pred ccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhh
Q 041114 430 IKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQIL 504 (680)
Q Consensus 430 i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l 504 (680)
+..+|.. ++++++|++|+|++| .+..++...+.++++|++|+++++. .+..+.++++|+.|++..+....+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 169 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT- 169 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-
Confidence 8888854 788999999999999 6877765558899999999998875 34467788899999988654443221
Q ss_pred hhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCcc----------C-CC--CCCCC
Q 041114 505 VSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVL----------K-SP--QPFVF 571 (680)
Q Consensus 505 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l----------~-~~--~~~~l 571 (680)
.....+++|+.|+++++. +...+...+..+++|+.|+++++..+..++........+ . .| .+..+
T Consensus 170 -~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 170 -EALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp -HHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred -hHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 112234588888888876 444444477788888888888877666554333221100 0 11 12456
Q ss_pred CCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 572 CSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 572 ~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
++|+.|+|++|. +..++ .+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ +++.+|...
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 248 VYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEP-YAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp TTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECT-TTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred cccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECH-HHhcCcccCCEEECCCC-cCceeCHhH
Confidence 777777777765 33333 3567788888888774 3454432 24567888888888886 577777643
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=4.6e-18 Score=181.53 Aligned_cols=257 Identities=16% Similarity=0.164 Sum_probs=151.9
Q ss_pred ccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEE
Q 041114 376 WETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCV 446 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L 446 (680)
..+++++++.++.+..+|.. ..+++| ++.+..+++..|..+++|++|+|++| .+..+| ..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEE
Confidence 35566666666666555542 223333 44555555544666666666666663 555554 335666666666
Q ss_pred eccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhh--hhhhhch------------
Q 041114 447 NLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSL--QILVSSN------------ 508 (680)
Q Consensus 447 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l--~~l~~~~------------ 508 (680)
++++| .++.+|.+.++++++|++|++++|. .+..+..+++|+.|++..+....+ ..++.+.
T Consensus 123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 66666 5666665534566666666666553 122345555666665553332211 1111100
Q ss_pred ---------------------hhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCC
Q 041114 509 ---------------------KLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQ 567 (680)
Q Consensus 509 ---------------------~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~ 567 (680)
....+|+.|+++++. +... ..+..+++|+.|+++++ .+..+.+..+
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~Ls~n-~l~~~~~~~~--------- 268 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPF--------- 268 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCEEESGGG---------
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCC-Cccc--HHHcCCCCccEEECCCC-cCCCcChhHc---------
Confidence 011245556665554 2222 25677888888888875 4444444443
Q ss_pred CCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCccccC
Q 041114 568 PFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALE 646 (680)
Q Consensus 568 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~ 646 (680)
..+++|++|++++|. ++.+| ....+|+|++|++++| .+..++.. .+.+++|+.|++++|+ +..+|......|+
T Consensus 269 -~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~ 342 (390)
T 3o6n_A 269 -VKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLKLSTHHTLK 342 (390)
T ss_dssp -TTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCCCCTTCCCS
T ss_pred -cccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeCchhhccCC
Confidence 568899999999976 44444 4567999999999996 46666543 3678999999999976 8888865544566
Q ss_pred cceEEec
Q 041114 647 HKIAIRG 653 (680)
Q Consensus 647 ~L~i~~~ 653 (680)
.|.+.++
T Consensus 343 ~L~l~~N 349 (390)
T 3o6n_A 343 NLTLSHN 349 (390)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 6666554
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=2.2e-17 Score=173.30 Aligned_cols=261 Identities=15% Similarity=0.165 Sum_probs=135.3
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCcc
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIK 431 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~ 431 (680)
..+...+..+..++.....++++++++.++.+..++....+++| ++.+..+|. |..+++|++|++++ +.+.
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~-n~i~ 123 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNE-DNIS 123 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTT-SCCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcC-Cccc
Confidence 34445555555566555667788888877777766554444444 455555543 66777777777777 3666
Q ss_pred ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEEeccchhhhhhhhchh
Q 041114 432 ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFTLRCVHSLQILVSSNK 509 (680)
Q Consensus 432 ~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~ 509 (680)
.+|. +..+++|++|++++|..+..+|. ++.+++|++|++++|. .+..+..+++|+.|++..+....+..+.
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---- 196 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA---- 196 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGG----
T ss_pred Cchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccccc----
Confidence 6665 66777777777777754554443 6777777777777664 2233566666666666544333322211
Q ss_pred hhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCcc-----------CCCCCCCCCCccEEe
Q 041114 510 LQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVL-----------KSPQPFVFCSLHKVT 578 (680)
Q Consensus 510 l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l-----------~~~~~~~l~~L~~L~ 578 (680)
.+++|+.|+++++. +...+ .+..+++|++|++++|. +..++. ......+ ..+.+..+++|++|+
T Consensus 197 ~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLN 271 (347)
T ss_dssp GCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred CCCccceeecccCC-CCCCc--hhhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEE
Confidence 12345555555443 22222 24455555555555432 222111 0000000 001113445555555
Q ss_pred eeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 579 ITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 579 L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
+++|. +..++.+..+++|++|++++|.. ...+.. .++.+|+|+.|++++|+ +..+
T Consensus 272 l~~n~-l~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 272 VGSNQ-ISDISVLNNLSQLNSLFLNNNQL-GNEDME-VIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCSSC-CCCCGGGGGCTTCSEEECCSSCC-CGGGHH-HHHTCTTCSEEECCSSS-CCCC
T ss_pred ccCCc-cCCChhhcCCCCCCEEECcCCcC-CCcChh-HhhccccCCEEEccCCc-cccc
Confidence 55543 44445555555555555555432 222111 12445566666665554 4443
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.2e-18 Score=190.29 Aligned_cols=258 Identities=18% Similarity=0.185 Sum_probs=155.5
Q ss_pred ccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEE
Q 041114 376 WETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCV 446 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L 446 (680)
+++++.|.+.+|.+..++.. ..+++| ++.+..+|+..|+++++|++|+|++| .+..+|.. ++++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEE
Confidence 45666666666666555431 233333 45556666655666666666666663 66666654 3666666666
Q ss_pred eccCCCCccccchhhhcCCCCCcEeeccCCcch-hhhcCCCCCceeEEEeccchhhhhhhhc--------------hhhh
Q 041114 447 NLEWARDLVTIPLEVISNFSKLRVLRLFGTVLA-KELLGLKHLEELDFTLRCVHSLQILVSS--------------NKLQ 511 (680)
Q Consensus 447 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~-~~l~~L~~L~~L~i~~~~~~~l~~l~~~--------------~~l~ 511 (680)
+|++| .+..+|+..++++++|++|++++|..- ..+..+++|+.|++..+....+.....+ ....
T Consensus 153 ~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 153 SMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp ECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 66666 465555544666666666666665411 1233344444444432221111100000 0112
Q ss_pred ccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-C
Q 041114 512 SCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-F 590 (680)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~ 590 (680)
.+|+.|+++++. +... ..+..+++|+.|+++++ .+..+.+..+ ..+++|+.|+|++|. +..+| .
T Consensus 232 ~~L~~L~L~~n~-l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~----------~~l~~L~~L~Ls~N~-l~~l~~~ 296 (597)
T 3oja_B 232 VELTILKLQHNN-LTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPF----------VKMQRLERLYISNNR-LVALNLY 296 (597)
T ss_dssp SCCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCEEESGGG----------TTCSSCCEEECTTSC-CCEEECS
T ss_pred CCCCEEECCCCC-CCCC--hhhccCCCCCEEECCCC-ccCCCCHHHh----------cCccCCCEEECCCCC-CCCCCcc
Confidence 356777777665 3322 36778889999999875 4454444444 578999999999976 44444 4
Q ss_pred cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCccccCcceEEecc
Q 041114 591 LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALEHKIAIRGE 654 (680)
Q Consensus 591 l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~ 654 (680)
.+.+|+|+.|++++|. +..+|.. ++.+++|+.|++++|+ +..+|+.....|+.|.+.+++
T Consensus 297 ~~~l~~L~~L~Ls~N~-l~~i~~~--~~~l~~L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNH-LLHVERN--QPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SSCCTTCCEEECCSSC-CCCCGGG--HHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred cccCCCCcEEECCCCC-CCccCcc--cccCCCCCEEECCCCC-CCCcChhhcCCCCEEEeeCCC
Confidence 5679999999999964 5566543 3679999999999976 788886554457777765543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.73 E-value=4.4e-17 Score=170.99 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=129.4
Q ss_pred cccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCC
Q 041114 371 PEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLK 444 (680)
Q Consensus 371 ~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr 444 (680)
.....+++++++.+.++.+..++....+++| ++.+..+|+ |..+++|++|++++| .+..+| .++.+++|+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred ccchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 3344567999999999999888766666666 667778877 889999999999995 888876 689999999
Q ss_pred EEeccCCCCccccchhhhcCCCCCcEeeccCCc---chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEec
Q 041114 445 CVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIR 521 (680)
Q Consensus 445 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~ 521 (680)
+|++++| .+..+|. +..+++|++|++++|. .+..+..+++|+.|++..+....+..+ ..+++|+.|++++
T Consensus 114 ~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 114 ELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPI----ANLTDLYSLSLNY 186 (347)
T ss_dssp EEECTTS-CCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECTT
T ss_pred EEECcCC-cccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhh----ccCCCCCEEEccC
Confidence 9999999 7999887 8899999999999885 445577888999999886554444332 2345899999998
Q ss_pred cCCCCcccccccccCCCCCEEEEecc
Q 041114 522 FKDSKSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 522 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
+. +...+ .+..+++|+.|+++++
T Consensus 187 n~-l~~~~--~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 187 NQ-IEDIS--PLASLTSLHYFTAYVN 209 (347)
T ss_dssp SC-CCCCG--GGGGCTTCCEEECCSS
T ss_pred Cc-ccccc--cccCCCccceeecccC
Confidence 86 44444 4788999999999875
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=9.4e-17 Score=167.23 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=139.5
Q ss_pred cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--- 477 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--- 477 (680)
++.+..+++..|.++++|++|+|++| .+..+ |..++.+++|++|++++| .++.+|.. +. ++|++|++++|.
T Consensus 61 ~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 61 NNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MP--KTLQELRVHENEITK 135 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB
T ss_pred CCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hc--ccccEEECCCCcccc
Confidence 33444566655778888888888884 67666 677888888888888888 68888875 43 688888888765
Q ss_pred -chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecc
Q 041114 478 -LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTD 556 (680)
Q Consensus 478 -~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 556 (680)
....+.++++|+.|++..+........+.....+++|+.|+++++. +..++. .+ .++|+.|+++++ .+..+.+.
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~n-~l~~~~~~ 210 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ-GL--PPSLTELHLDGN-KITKVDAA 210 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS-SC--CTTCSEEECTTS-CCCEECTG
T ss_pred cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc-cc--cccCCEEECCCC-cCCccCHH
Confidence 2334677788888877754443222222223334578888887765 444442 22 267888888765 34444333
Q ss_pred cCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCC
Q 041114 557 YTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLR 635 (680)
Q Consensus 557 ~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~ 635 (680)
.+ ..+++|++|++++|......+ .+..+++|++|+++++ .+..++.. +..+++|+.|++++|+ ++
T Consensus 211 ~~----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N~-i~ 276 (330)
T 1xku_A 211 SL----------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNNN-IS 276 (330)
T ss_dssp GG----------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSSC-CC
T ss_pred Hh----------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCCc-CC
Confidence 33 466788888888765332222 4677888888888875 45555442 3667888888888764 77
Q ss_pred CCCCC
Q 041114 636 KLPLD 640 (680)
Q Consensus 636 ~lP~~ 640 (680)
.+|..
T Consensus 277 ~~~~~ 281 (330)
T 1xku_A 277 AIGSN 281 (330)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 77654
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.8e-16 Score=173.37 Aligned_cols=263 Identities=19% Similarity=0.217 Sum_probs=138.8
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCcc
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIK 431 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~ 431 (680)
..+...+..+..++.....+++++|.+.+|.+..++....+++| ++.+..+++ +.++++|++|++++| .+.
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCC
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCC
Confidence 34444555555666666667888888888887776654444544 556666665 677888888888874 777
Q ss_pred ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc-chhhhcCCCCCceeEEEeccchhhhhhhhc---
Q 041114 432 ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-LAKELLGLKHLEELDFTLRCVHSLQILVSS--- 507 (680)
Q Consensus 432 ~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~--- 507 (680)
.+|. ++++++|++|++++| .+..+|. ++.+++|++|++.++. .+..+.++++|+.|++..+....+..+...
T Consensus 126 ~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 201 (466)
T 1o6v_A 126 DIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 201 (466)
T ss_dssp CCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred CChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCC
Confidence 7765 777888888888877 5776664 5556555555554221 222344455555555543322222111111
Q ss_pred ---------------hhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCcc---------
Q 041114 508 ---------------NKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVL--------- 563 (680)
Q Consensus 508 ---------------~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l--------- 563 (680)
...+++|+.|+++++. +...+ .+..+++|+.|+++++.. ..+++ ......+
T Consensus 202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 202 ESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIG--TLASLTNLTDLDLANNQI-SNLAP-LSGLTKLTELKLGANQ 276 (466)
T ss_dssp SEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSC
T ss_pred CEEEecCCcccccccccccCCCCEEECCCCC-cccch--hhhcCCCCCEEECCCCcc-ccchh-hhcCCCCCEEECCCCc
Confidence 1123345555555543 22222 455556666666655422 21111 0000000
Q ss_pred --CCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCC
Q 041114 564 --KSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLP 638 (680)
Q Consensus 564 --~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP 638 (680)
..+.+..+++|+.|++++|. +..++.++.+++|+.|++++|. +..++. ++.+++|+.|++++| ++..+|
T Consensus 277 l~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 277 ISNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCCCG
T ss_pred cCccccccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCCch
Confidence 00112345555555555543 3444445566666666666643 333322 245666666666665 355543
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=5.7e-17 Score=173.07 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=142.7
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--- 477 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--- 477 (680)
++.+..+|..+|..+++|++|+|++| .+..+| ..++.+++|++|++++| .+..+|++.++++++|++|++++|.
T Consensus 54 ~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 54 NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence 67788999998999999999999994 888887 48999999999999999 7999887668999999999999986
Q ss_pred chhh-hcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccC--------
Q 041114 478 LAKE-LLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCE-------- 548 (680)
Q Consensus 478 ~~~~-l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------- 548 (680)
.+.. +.++++|+.|++..+....+. +.....+++|+.|+++++. +...+ +..+++|+.|+++++.
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCCSEEECCS
T ss_pred CCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccccccCCCC
Confidence 2333 578999999999865443321 1222334689999998875 33332 3344555555554321
Q ss_pred ----------CcceeecccCCC-C-------cc-CCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcch
Q 041114 549 ----------ELEEWKTDYTSG-T-------VL-KSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAM 608 (680)
Q Consensus 549 ----------~l~~l~~~~~~~-~-------~l-~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l 608 (680)
.+..++...... . .+ .++.+..+++|++|++++|......| .+..+++|++|+++++ .+
T Consensus 206 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 284 (390)
T 3o6n_A 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RL 284 (390)
T ss_dssp SCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CC
T ss_pred cceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cC
Confidence 111111100000 0 00 01222445566666666654222222 3555666666666663 34
Q ss_pred hHhhhcCCCCCCCcccccCccccccCCCCCCC
Q 041114 609 EEIISAGKFVHTPEMMGNTMDPCAKLRKLPLD 640 (680)
Q Consensus 609 ~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~ 640 (680)
..++.. .+.+|+|+.|++++| ++..+|..
T Consensus 285 ~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 285 VALNLY--GQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp CEEECS--SSCCTTCCEEECCSS-CCCCCGGG
T ss_pred cccCcc--cCCCCCCCEEECCCC-cceecCcc
Confidence 444322 245667777777665 35566543
No 13
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.70 E-value=9.5e-17 Score=167.37 Aligned_cols=209 Identities=15% Similarity=0.180 Sum_probs=109.6
Q ss_pred ccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----ch
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LA 479 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~ 479 (680)
+..+++..|.++++|++|+|++| .+..+ |..++++++|++|++++| .+..+|.. +. ++|++|++++|. ..
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCCCS
T ss_pred CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-cCCccCcc-cc--ccCCEEECCCCccCccCH
Confidence 33454444666677777777763 56555 456666777777777766 56666664 33 666777776654 11
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
..+..+++|+.|++..+........+.....+ +|+.|+++++. +..++. .+ .++|++|+++++ .+..+++..+
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~-~~--~~~L~~L~l~~n-~i~~~~~~~l- 213 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK-DL--PETLNELHLDHN-KIQAIELEDL- 213 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS-SS--CSSCSCCBCCSS-CCCCCCTTSS-
T ss_pred hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc-cc--cCCCCEEECCCC-cCCccCHHHh-
Confidence 23556666666666544332221112111112 56666666554 333332 11 146666666553 3333322222
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
..+++|+.|++++|. +..++ .+..+++|++|+++++ .+..+|.. ++.+++|+.|++++++ +..+
T Consensus 214 ---------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N~-l~~~ 279 (332)
T 2ft3_A 214 ---------LRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAG--LPDLKLLQVVYLHTNN-ITKV 279 (332)
T ss_dssp ---------TTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-CCCBCCTT--GGGCTTCCEEECCSSC-CCBC
T ss_pred ---------cCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-cCeecChh--hhcCccCCEEECCCCC-CCcc
Confidence 445666666666654 33332 3556666666666654 34444332 3456666666666643 5555
Q ss_pred CC
Q 041114 638 PL 639 (680)
Q Consensus 638 P~ 639 (680)
|.
T Consensus 280 ~~ 281 (332)
T 2ft3_A 280 GV 281 (332)
T ss_dssp CT
T ss_pred Ch
Confidence 44
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=2.7e-16 Score=178.02 Aligned_cols=138 Identities=19% Similarity=0.261 Sum_probs=112.7
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+.++..+|... ..++++|.+++|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++| .
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-P 91 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-c
Confidence 35666777788887533 37899999999999887653 455555 67788887777999999999999995 7
Q ss_pred cccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc-----chhhhcCCCCCceeEEEeccc
Q 041114 430 IKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 430 i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~~~~~ 498 (680)
+..+ |..+++|++|++|++++| .+..+|...++++++|++|++++|. .+..++++++|+.|++..+..
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred ccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 8777 788999999999999999 7988885449999999999999876 356788999999999886543
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=2.1e-16 Score=171.42 Aligned_cols=227 Identities=20% Similarity=0.220 Sum_probs=125.7
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCc
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNI 430 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i 430 (680)
.+...+..+..+|... ..+++.|.+.+|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++| .+
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l 124 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RL 124 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cC
Confidence 4555566666676432 26788888888888765432 233333 45555566555666666666666663 56
Q ss_pred cccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchh-----hhcCCCCCceeEEEeccchhhhhh
Q 041114 431 KELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAK-----ELLGLKHLEELDFTLRCVHSLQIL 504 (680)
Q Consensus 431 ~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~-----~l~~L~~L~~L~i~~~~~~~l~~l 504 (680)
..+|. .+..+++|++|+|++| .+..+|...+.++++|++|+++++..+. .+.++++|+.|++..+....+.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 66653 3666666666666666 5666665446666666666666544221 3445566666666544333222
Q ss_pred hhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCC
Q 041114 505 VSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPK 584 (680)
Q Consensus 505 ~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~ 584 (680)
.+ ..+++|+.|+++++. +...+...+..+++|+.|+++++ .+..+....+ ..+++|+.|+|++|.
T Consensus 202 -~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~----------~~l~~L~~L~L~~N~- 266 (440)
T 3zyj_A 202 -NL-TPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAF----------DNLQSLVEINLAHNN- 266 (440)
T ss_dssp -CC-TTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTSS----------TTCTTCCEEECTTSC-
T ss_pred -cc-CCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEEChhhh----------cCCCCCCEEECCCCC-
Confidence 21 122356666666654 33333235566666666666553 3443333332 445666666666653
Q ss_pred CCCCCC--cCCCCCCCEEeEecC
Q 041114 585 LKGLTF--LVFAPNLKCLSLFDC 605 (680)
Q Consensus 585 l~~l~~--l~~l~~L~~L~l~~c 605 (680)
++.+|. +..+++|+.|+++++
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCccChhHhccccCCCEEEcCCC
Confidence 344432 455666666666553
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=5.3e-16 Score=161.54 Aligned_cols=251 Identities=17% Similarity=0.200 Sum_probs=188.7
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+..+..+|... .+.++.+.+.+|.+..++.. ..+++| ++.+..+++..|..+++|++|+|++ +.
T Consensus 34 ~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~ 111 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQ 111 (330)
T ss_dssp TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SC
T ss_pred eEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-Cc
Confidence 34555555666666432 36899999999999887652 445555 6778888665699999999999999 58
Q ss_pred ccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc------hhhhcCCCCCceeEEEeccchhhhh
Q 041114 430 IKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL------AKELLGLKHLEELDFTLRCVHSLQI 503 (680)
Q Consensus 430 i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~------~~~l~~L~~L~~L~i~~~~~~~l~~ 503 (680)
+..+|..+. ++|++|++++| .+..+|...++++++|++|+++++.. +..+.++++|+.|++..+....
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 185 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--- 185 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS---
T ss_pred CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc---
Confidence 999998765 79999999999 79999887689999999999998753 4567889999999998554443
Q ss_pred hhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 504 LVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 504 l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
++.. ..++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...+ ..+++|+.|++++|.
T Consensus 186 l~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~----------~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 186 IPQG--LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSL----------ANTPHLRELHLNNNK 251 (330)
T ss_dssp CCSS--CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTG----------GGSTTCCEEECCSSC
T ss_pred CCcc--ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhc----------cCCCCCCEEECCCCc
Confidence 3322 22689999999987 55554457889999999999975 4555544333 578999999999986
Q ss_pred CCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCC-----CCCcccccCccccc
Q 041114 584 KLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFV-----HTPEMMGNTMDPCA 632 (680)
Q Consensus 584 ~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~-----~lp~L~~L~i~~C~ 632 (680)
+..+| ++..+++|++|+++++ .+..++...+.+ ..+.|+.+++.+.|
T Consensus 252 -l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 252 -LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp -CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -CccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 44554 6889999999999985 467665443211 24666777777765
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=172.33 Aligned_cols=248 Identities=18% Similarity=0.193 Sum_probs=170.2
Q ss_pred EEEEeecccccccccC--CCCccc---cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCC
Q 041114 380 RRLSLMQNQIKILSEA--PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 380 r~lsl~~~~~~~l~~~--~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~ 453 (680)
+.+...++.+..+|.. .....| ++.+..+++..|.++++|++|+|++| .+..+ |..+++|++|++|+|++| .
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-c
Confidence 4566667777777654 222333 77888888777999999999999995 88777 688999999999999999 7
Q ss_pred ccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccc
Q 041114 454 LVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID 529 (680)
Q Consensus 454 l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~ 529 (680)
++.+|.+.++++++|++|++++|. ....+..+++|+.|++..+....+. +.....+++|+.|+++++. +...+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~ 168 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCN-LTSIP 168 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCC-CSSCC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCc-CcccC
Confidence 999998767999999999999986 3456788999999999855443321 1122334689999999986 55555
Q ss_pred ccccccCCCCCEEEEeccCCcceeecccCCC-C-------------ccCCCCCCCCCCccEEeeeCCCCCCCCC--CcCC
Q 041114 530 VIALARLKHLSTLHFSKCEELEEWKTDYTSG-T-------------VLKSPQPFVFCSLHKVTITFCPKLKGLT--FLVF 593 (680)
Q Consensus 530 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-~-------------~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~ 593 (680)
...+..+++|+.|+++++ .+..++...+.. . +..++......+|++|++++|. ++.+| .+..
T Consensus 169 ~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 246 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRH 246 (477)
T ss_dssp HHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTT
T ss_pred hhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcC
Confidence 557889999999999975 344443322210 0 0001112222355666666543 44444 3567
Q ss_pred CCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 594 APNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 594 l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
+++|++|+++++. +..++. ..+..+++|+.|+++++. +..+
T Consensus 247 l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~ 287 (477)
T 2id5_A 247 LVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVV 287 (477)
T ss_dssp CTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSC-CSEE
T ss_pred ccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCc-cceE
Confidence 7777777777743 454433 234667788888777753 4444
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=1.4e-15 Score=178.56 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=104.6
Q ss_pred ccEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc-------cccccccchhhhccCCcceEEEccCC
Q 041114 357 ENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL-------HYEFKMITDGFFQFMPLLKVLNMSRE 427 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L-------~~~l~~lp~~~~~~l~~Lr~LdL~~~ 427 (680)
...+...+.++..+|. -..++++|.+++|.+..+... ..+++| +.....+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3456667778888887 568999999999999876432 444555 33456776666899999999999994
Q ss_pred CCcccc-chhhhccCCCCEEeccCCCCccc-cch-hhhcCCCCCcEeeccCCcc-----hhhhcCCCCCceeEEEeccc
Q 041114 428 TNIKEL-LGELKALVNLKCVNLEWARDLVT-IPL-EVISNFSKLRVLRLFGTVL-----AKELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 428 ~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~-lP~-~~i~~L~~L~~L~l~~~~~-----~~~l~~L~~L~~L~i~~~~~ 498 (680)
.+..+ |..+++|++|++|+|++| .+.. +|. ..+++|++|++|++++|.. ...+++|++|+.|++..+..
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 77766 788999999999999999 6765 443 2378899999999998752 24678899999999886543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=4.8e-16 Score=169.37 Aligned_cols=276 Identities=18% Similarity=0.237 Sum_probs=176.4
Q ss_pred ccEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------ccccc-ccchhhhccCCcceEEEccCC
Q 041114 357 ENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFK-MITDGFFQFMPLLKVLNMSRE 427 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~-~lp~~~~~~l~~Lr~LdL~~~ 427 (680)
...+...+.++..+|. -.+++++|++++|.+..++.. ..+++| ++.+. .+++..|.++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3456666777777776 347899999999999886432 445555 44443 676767899999999999995
Q ss_pred CCcccc-chhhhccCCCCEEeccCCCCccc-cc-hhhhcCCCCCcEeeccCCcc----hhh-hcCCCCCceeEEEeccch
Q 041114 428 TNIKEL-LGELKALVNLKCVNLEWARDLVT-IP-LEVISNFSKLRVLRLFGTVL----AKE-LLGLKHLEELDFTLRCVH 499 (680)
Q Consensus 428 ~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~-lP-~~~i~~L~~L~~L~l~~~~~----~~~-l~~L~~L~~L~i~~~~~~ 499 (680)
.+..+ |..++++++|++|++++| .+.. +| ...++++++|++|++++|.. +.. +.++++|+.|++..+...
T Consensus 90 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 -QFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp -TTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred -ccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 77665 688999999999999999 6775 23 23378899999999998862 233 778899999998754432
Q ss_pred hhh--hhhhc------------------------------hhhhccccEEEEeccCCCCccc------------------
Q 041114 500 SLQ--ILVSS------------------------------NKLQSCTRALVLIRFKDSKSID------------------ 529 (680)
Q Consensus 500 ~l~--~l~~~------------------------------~~l~~~L~~L~l~~~~~~~~~~------------------ 529 (680)
... .+... ....++|+.|+++++.-....+
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 211 11110 0011356666666553211000
Q ss_pred --------------------------------------------ccccccCCCCCEEEEeccCCcceeecccCCCCccCC
Q 041114 530 --------------------------------------------VIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKS 565 (680)
Q Consensus 530 --------------------------------------------~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 565 (680)
...+..+++|+.|+++++ .+..++ +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~----------~ 316 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKID----------D 316 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEEC----------T
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccC----------h
Confidence 012233334444444332 122221 2
Q ss_pred CCCCCCCCccEEeeeCCCCCCCC-C-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc
Q 041114 566 PQPFVFCSLHKVTITFCPKLKGL-T-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS 643 (680)
Q Consensus 566 ~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~ 643 (680)
..+..+++|++|+|++|.. +.+ | .++.+++|++|+++++. +..++. ..++.+++|+.|+++++ +++.+|.....
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 392 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGD-QSFLGLPNLKELALDTN-QLKSVPDGIFD 392 (455)
T ss_dssp TTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSS-CCSCCCTTTTT
T ss_pred hHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCCc-ccccCh-hhccccccccEEECCCC-ccccCCHhHhc
Confidence 2336778888888888753 443 2 46788999999999864 555533 34577999999999985 58888875433
Q ss_pred ---ccCcceEE
Q 041114 644 ---ALEHKIAI 651 (680)
Q Consensus 644 ---~l~~L~i~ 651 (680)
.|+.|.+.
T Consensus 393 ~l~~L~~L~l~ 403 (455)
T 3v47_A 393 RLTSLQKIWLH 403 (455)
T ss_dssp TCTTCCEEECC
T ss_pred cCCcccEEEcc
Confidence 34444443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.1e-16 Score=180.60 Aligned_cols=261 Identities=14% Similarity=0.103 Sum_probs=170.3
Q ss_pred cccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCE
Q 041114 375 EWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKC 445 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~ 445 (680)
...+++.+.+.++.+..+|.. ..+++| ++.+..+|+..|..+++|++|+|++| .+..+|. .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 456889999999998888764 334444 66777888766888999999999984 7877764 4689999999
Q ss_pred EeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEec
Q 041114 446 VNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIR 521 (680)
Q Consensus 446 L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~ 521 (680)
|+|++| .+..+|.+.++++++|++|++++|. .+..+..+++|+.|++..+....+. ...+++|+.|++++
T Consensus 128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSY 201 (597)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCS
T ss_pred EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhccc
Confidence 999998 7888988756889999999998875 2345778888888888755443321 12234666666665
Q ss_pred cCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCC--------cc-CCCCCCCCCCccEEeeeCCCCCCCCC-Cc
Q 041114 522 FKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGT--------VL-KSPQPFVFCSLHKVTITFCPKLKGLT-FL 591 (680)
Q Consensus 522 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--------~l-~~~~~~~l~~L~~L~L~~c~~l~~l~-~l 591 (680)
+. +. .+...++|+.|+++++. +..++......- .+ .++.+..+++|+.|+|++|.....+| .+
T Consensus 202 n~-l~-----~l~~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 202 NL-LS-----TLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SC-CS-----EEECCTTCSEEECCSSC-CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred Cc-cc-----cccCCchhheeeccCCc-ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 43 11 22334455555555432 222211110000 00 12233677888888888876443333 47
Q ss_pred CCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc--ccCcceEEec
Q 041114 592 VFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS--ALEHKIAIRG 653 (680)
Q Consensus 592 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~--~l~~L~i~~~ 653 (680)
+.+++|+.|+++++ .+..++.. .+.+|+|+.|++++|+ +..+|..+.. .|+.|.+.++
T Consensus 275 ~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 275 VKMQRLERLYISNN-RLVALNLY--GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp TTCSSCCEEECTTS-CCCEEECS--SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred cCccCCCEEECCCC-CCCCCCcc--cccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence 78888888888884 45555432 3668899999888874 6677765432 3444444444
No 21
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.68 E-value=7.7e-17 Score=182.91 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHhCCChhHHHHHHHHhccC-CCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcCCchhH-HHHHHHhcccCCCc
Q 041114 208 KECGGSPLALITIGRAMAYK-KKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSLQNDVI-RSCFLYCCLYPEDF 285 (680)
Q Consensus 208 ~kc~GlPLai~~lg~~L~~k-~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L~~~~l-k~cfl~~s~Fp~~~ 285 (680)
+.|+|+||||+++|+.|+.+ .+.++|... . ...+..+|.+||+.||+ +. |.||+|||+||+++
T Consensus 321 eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-----~---------~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~ 385 (1221)
T 1vt4_I 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHV-----N---------CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSA 385 (1221)
T ss_dssp HHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-----S---------CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTS
T ss_pred HHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-----C---------hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCC
Confidence 45999999999999999986 378889762 1 24799999999999999 78 99999999999999
Q ss_pred ccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHccccccc-CcccEEechhHHHHH
Q 041114 286 AILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEV-GDDKVKLHGVLHDMA 345 (680)
Q Consensus 286 ~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~-~~~~~~mhdl~~d~a 345 (680)
.|+++.++.+|+++| ++.++.++++|+++||++.. ....|+|||++++++
T Consensus 386 ~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 386 HIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp CEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999999987 13588899999999999986 467899999999966
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=1.9e-16 Score=163.47 Aligned_cols=240 Identities=14% Similarity=0.077 Sum_probs=133.4
Q ss_pred cceEEEEeecccccc---cccC-CCCccc-----c--cccc-ccchhhhccCCcceEEEccCCCCcc-ccchhhhccCCC
Q 041114 377 ETVRRLSLMQNQIKI---LSEA-PTCPHL-----H--YEFK-MITDGFFQFMPLLKVLNMSRETNIK-ELLGELKALVNL 443 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~---l~~~-~~~~~L-----~--~~l~-~lp~~~~~~l~~Lr~LdL~~~~~i~-~lP~~i~~L~~L 443 (680)
.+++++.+.++.+.. +|.. ..+++| . +.+. .+|.. |.++++|++|+|++| .+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 478889998888763 3322 222333 1 3333 34444 666677777777663 554 566666677777
Q ss_pred CEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc----chhhhcCCC-CCceeEEEeccchhhhhhhhchhhhccccEE
Q 041114 444 KCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV----LAKELLGLK-HLEELDFTLRCVHSLQILVSSNKLQSCTRAL 517 (680)
Q Consensus 444 r~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~-~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L 517 (680)
++|++++| .+. .+|.. ++++++|++|++++|. .+..+..+. +|+.|++..+.... .++.....+ .|+.|
T Consensus 128 ~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--~~~~~~~~l-~L~~L 202 (313)
T 1ogq_A 128 VTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANL-NLAFV 202 (313)
T ss_dssp CEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE--ECCGGGGGC-CCSEE
T ss_pred CEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec--cCChHHhCC-cccEE
Confidence 77777766 455 55654 6667777777776654 334555665 66666665433221 111111222 26666
Q ss_pred EEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCC
Q 041114 518 VLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPN 596 (680)
Q Consensus 518 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~ 596 (680)
+++++.-....+ ..+..+++|+.|+++++.. ....+. ...+++|++|++++|.....+| ++..+++
T Consensus 203 ~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~-----------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 269 (313)
T 1ogq_A 203 DLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSL-AFDLGK-----------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269 (313)
T ss_dssp ECCSSEEEECCG-GGCCTTSCCSEEECCSSEE-CCBGGG-----------CCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred ECcCCcccCcCC-HHHhcCCCCCEEECCCCce-eeecCc-----------ccccCCCCEEECcCCcccCcCChHHhcCcC
Confidence 666654222222 3566667777777765432 211111 1445677777777765433444 4666777
Q ss_pred CCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 597 LKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 597 L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
|++|+++++.....+|.. +.+++|+.+++.++|.|-..|.
T Consensus 270 L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEESTTS
T ss_pred CCEEECcCCcccccCCCC---ccccccChHHhcCCCCccCCCC
Confidence 777777775433333332 5677777777777666655544
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.8e-16 Score=161.76 Aligned_cols=237 Identities=17% Similarity=0.203 Sum_probs=155.0
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCcccc---ch
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKEL---LG 435 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l---P~ 435 (680)
.+...+.++..+|... ..++++|.+.++.+. .+|..+|.++++|++|+|++| .+..+ |.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~----------------~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 72 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQ----------------SLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQ 72 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCC----------------CCCTTTTTTCTTCSEEECCSS-CCCEEEEEEH
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccC----------------ccCHhHhhccccCCEEECCCC-ccCcccCccc
Confidence 3445555566666422 257788888777665 566666888999999999994 66654 67
Q ss_pred hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc-----hhhhcCCCCCceeEEEeccchhhhhhhhchhh
Q 041114 436 ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL-----AKELLGLKHLEELDFTLRCVHSLQILVSSNKL 510 (680)
Q Consensus 436 ~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~-----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l 510 (680)
.+..+++|++|++++| .+..+|.. +..+++|++|+++++.. ...+..+++|+.|++..+..... .+.....
T Consensus 73 ~~~~~~~L~~L~Ls~n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~ 148 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA--FNGIFNG 148 (306)
T ss_dssp HHHSCSCCCEEECCSC-SEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--STTTTTT
T ss_pred ccccccccCEEECCCC-ccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--chhhccc
Confidence 7888999999999999 78889987 88999999999998751 13566777888877764332211 1122223
Q ss_pred hccccEEEEeccCCCC-cccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC
Q 041114 511 QSCTRALVLIRFKDSK-SIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 511 ~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~ 589 (680)
+++|+.|+++++.-.. ..+ ..+..+++|+.|+++++ .+..+++..+ ..+++|++|++++|. +..++
T Consensus 149 l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~----------~~l~~L~~L~L~~N~-l~~~~ 215 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSPTAF----------NSLSSLQVLNMSHNN-FFSLD 215 (306)
T ss_dssp CTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECTTTT----------TTCTTCCEEECTTSC-CSBCC
T ss_pred CcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCC-CcCCcCHHHh----------cCCCCCCEEECCCCc-cCccC
Confidence 4577788877765222 123 36677788888888765 4444433333 466778888888765 33333
Q ss_pred --CcCCCCCCCEEeEecCcchhHhhhcCCCCCCC-cccccCccccc
Q 041114 590 --FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTP-EMMGNTMDPCA 632 (680)
Q Consensus 590 --~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp-~L~~L~i~~C~ 632 (680)
.+..+++|++|+++++. +...+.. .+..+| +|+.|++++++
T Consensus 216 ~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SGGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred hhhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 35677888888888754 4333222 234453 67777666654
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=4.7e-16 Score=178.47 Aligned_cols=163 Identities=20% Similarity=0.214 Sum_probs=122.3
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+..+..+|... ..++++|.+.+|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++| .
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-c
Confidence 45666677777777533 37899999999999887653 445555 67788887777999999999999994 8
Q ss_pred ccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhh
Q 041114 430 IKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQIL 504 (680)
Q Consensus 430 i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l 504 (680)
+..+|. .++++++|++|++++| .+..+|+..++++++|++|++++|. .+..+.++++|+.|++..+....+..-
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 999996 5999999999999999 7888886559999999999999885 344567889999999875543322110
Q ss_pred hhchhhhccccEEEEeccC
Q 041114 505 VSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 505 ~~~~~l~~~L~~L~l~~~~ 523 (680)
.-.....++|+.|+++++.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp HHGGGTTCEESEEECTTCC
T ss_pred HhhccccccccEEECCCCc
Confidence 0000112578888887764
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=1e-15 Score=167.40 Aligned_cols=257 Identities=18% Similarity=0.195 Sum_probs=136.9
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccc-----cccccccchhhhccCCcceEEEccCCCCcccc
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL-----HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL 433 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L-----~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l 433 (680)
.+...+..+..++.....+++++|.+.+|.+..++....+++| .+.+..+++ +.++++|++|++++| .+..+
T Consensus 116 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~ 192 (466)
T 1o6v_A 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSN-KVSDI 192 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred EEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchh--hccCCCCCEEECcCC-cCCCC
Confidence 3444444455555555667777777777777766554444444 333334443 667777777777774 56666
Q ss_pred chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEEeccchhhhhhhhchhhh
Q 041114 434 LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQ 511 (680)
Q Consensus 434 P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~ 511 (680)
+ .++.+++|++|++++| .+..++. ++.+++|++|++++|. .+..+..+++|+.|++..+....+..+ ..+
T Consensus 193 ~-~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~l 264 (466)
T 1o6v_A 193 S-VLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPL----SGL 264 (466)
T ss_dssp G-GGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG----TTC
T ss_pred h-hhccCCCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhh----hcC
Confidence 4 4677777777777777 5666665 5667777777777664 334556666777777664443332221 122
Q ss_pred ccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC-CCcc-----------CCCCCCCCCCccEEee
Q 041114 512 SCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS-GTVL-----------KSPQPFVFCSLHKVTI 579 (680)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~-~~~l-----------~~~~~~~l~~L~~L~L 579 (680)
++|+.|+++++. +...+ .+..+++|+.|+++++. +..+++ .. ...+ ..+....+++|+.|++
T Consensus 265 ~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 265 TKLTELKLGANQ-ISNIS--PLAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp TTCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCc-cCccc--cccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence 356666666554 22222 24555566666665532 222211 00 0000 0000134555555555
Q ss_pred eCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCC
Q 041114 580 TFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLP 638 (680)
Q Consensus 580 ~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP 638 (680)
++|. +..++.+..+++|+.|++++|. +..+++ .+.+++|+.|++++|+ +..+|
T Consensus 339 ~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 339 YNNK-VSDVSSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp CSSC-CCCCGGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE-EECCC
T ss_pred CCCc-cCCchhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc-ccCCc
Confidence 5543 4444555555666666665543 222222 2455666666655543 33344
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=8.3e-16 Score=167.39 Aligned_cols=229 Identities=20% Similarity=0.202 Sum_probs=170.4
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+.++..+|... ..++++|.+.+|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++ +.
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SC
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-Cc
Confidence 34556666777777432 36899999999999877433 344555 6778888877788999999999999 48
Q ss_pred ccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchh-----hhcCCCCCceeEEEeccchhhhh
Q 041114 430 IKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAK-----ELLGLKHLEELDFTLRCVHSLQI 503 (680)
Q Consensus 430 i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~-----~l~~L~~L~~L~i~~~~~~~l~~ 503 (680)
+..+|.. ++.+++|++|+|++| .+..+|...+.++++|++|++++|..+. .+.++++|+.|++..+....+..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 8888854 888999999999999 7888888668899999999998865333 45678888888887655444432
Q ss_pred hhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 504 LVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 504 l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
+ ..+.+|+.|+++++. +...+...+..+++|+.|+++++ .+..+.+..+ ..+++|+.|+|++|.
T Consensus 214 ~----~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~----------~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 214 L----TPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAF----------DGLASLVELNLAHNN 277 (452)
T ss_dssp C----TTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEECTTTT----------TTCTTCCEEECCSSC
T ss_pred c----cccccccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceECHHHh----------cCCCCCCEEECCCCc
Confidence 2 233489999999886 44444357888999999999875 4555544443 578899999999975
Q ss_pred CCCCCCC--cCCCCCCCEEeEecCc
Q 041114 584 KLKGLTF--LVFAPNLKCLSLFDCT 606 (680)
Q Consensus 584 ~l~~l~~--l~~l~~L~~L~l~~c~ 606 (680)
++.+|. +..+++|+.|++++++
T Consensus 278 -l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 -LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -CCccChHHhccccCCCEEEccCCC
Confidence 556653 6788999999998754
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=5.5e-16 Score=172.01 Aligned_cols=133 Identities=25% Similarity=0.332 Sum_probs=96.7
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
+.+...+..+..+|.... +++++|++++|.+..++.. ..+++| ++.+..+++..|.++++|++|||++ +.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-Cc
Confidence 455666667777775433 7999999999998876532 444444 6677777666688899999999998 48
Q ss_pred ccccchhhhccCCCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCCcch-hhhcCCCCC--ceeEEEec
Q 041114 430 IKELLGELKALVNLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGTVLA-KELLGLKHL--EELDFTLR 496 (680)
Q Consensus 430 i~~lP~~i~~L~~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~~~-~~l~~L~~L--~~L~i~~~ 496 (680)
+..+|.. .+++|++|++++| .+.. +|.. ++++++|++|++++|..- ..+..+++| +.|++..+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEEC
T ss_pred eeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccchhhccccccceeeEEEeecc
Confidence 8888876 7889999999988 6775 4565 888999999988877522 334455555 66666543
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=3.1e-16 Score=163.49 Aligned_cols=251 Identities=18% Similarity=0.186 Sum_probs=189.2
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+..+..+|... .++++.|.+.+|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++ +.
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~ 113 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NH 113 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SC
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-Cc
Confidence 44556666677776533 36899999999999887542 455555 6778888666699999999999999 58
Q ss_pred ccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc------hhhhcCCCCCceeEEEeccchhhhh
Q 041114 430 IKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL------AKELLGLKHLEELDFTLRCVHSLQI 503 (680)
Q Consensus 430 i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~------~~~l~~L~~L~~L~i~~~~~~~l~~ 503 (680)
+..+|..+. ++|++|++++| .+..+|...++++++|++|+++++.. +..+..+ +|+.|++..+....
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--- 186 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--- 186 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS---
T ss_pred CCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc---
Confidence 999998776 89999999999 79999987689999999999998763 3445566 88888887554443
Q ss_pred hhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 504 LVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 504 l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
++.. ..++|+.|+++++. +...+...+..+++|+.|+++++ .+..+++..+ ..+++|+.|++++|.
T Consensus 187 l~~~--~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 187 IPKD--LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSL----------SFLPTLRELHLDNNK 252 (332)
T ss_dssp CCSS--SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGG----------GGCTTCCEEECCSSC
T ss_pred cCcc--ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChhHh----------hCCCCCCEEECCCCc
Confidence 3322 22589999999886 44444457889999999999975 4554444333 578999999999986
Q ss_pred CCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCC-----CCcccccCcccccc
Q 041114 584 KLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVH-----TPEMMGNTMDPCAK 633 (680)
Q Consensus 584 ~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~-----lp~L~~L~i~~C~~ 633 (680)
+..+| .+..+++|++|+++++ .+..++...+.+. +++|+.|++.++|-
T Consensus 253 -l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 253 -LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp -CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred -CeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 44555 5889999999999985 5676654432222 57788899998873
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=5.8e-16 Score=168.62 Aligned_cols=233 Identities=18% Similarity=0.160 Sum_probs=123.4
Q ss_pred eEEEEeecccccccccC--CCCccc---cccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCC
Q 041114 379 VRRLSLMQNQIKILSEA--PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWAR 452 (680)
Q Consensus 379 ~r~lsl~~~~~~~l~~~--~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~ 452 (680)
.+.+...+..+..+|.. .....| ++.+..+++..|.++++|++|+|++| .+..++ ..+..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-
Confidence 34566666666666543 112222 55566665555667777777777773 666555 55667777777777776
Q ss_pred CccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhh-chhhhccccEEEEeccCCCCc
Q 041114 453 DLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVS-SNKLQSCTRALVLIRFKDSKS 527 (680)
Q Consensus 453 ~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~~~~ 527 (680)
.+..+|.+.++.+++|++|++++|.. ...+.++++|+.|++..+ ..+..++. ....+++|+.|+++++. +..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~ 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL--KKLEYISEGAFEGLFNLKYLNLGMCN-IKD 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC--TTCCEECTTTTTTCTTCCEEECTTSC-CSS
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC--CCccccChhhccCCCCCCEEECCCCc-ccc
Confidence 56666665566677777777776641 123455566666655421 11222211 11223356666666554 333
Q ss_pred ccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCc
Q 041114 528 IDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 528 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 606 (680)
++ .+..+++|+.|+++++ .+..+.+..+ ..+++|+.|+|++|......+ .+..+++|++|+++++
T Consensus 211 ~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N- 276 (452)
T 3zyi_A 211 MP--NLTPLVGLEELEMSGN-HFPEIRPGSF----------HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN- 276 (452)
T ss_dssp CC--CCTTCTTCCEEECTTS-CCSEECGGGG----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred cc--cccccccccEEECcCC-cCcccCcccc----------cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-
Confidence 33 4555666666666553 3333333333 345666666666654222212 3455666666666653
Q ss_pred chhHhhhcCCCCCCCcccccCcccc
Q 041114 607 AMEEIISAGKFVHTPEMMGNTMDPC 631 (680)
Q Consensus 607 ~l~~i~~~~~~~~lp~L~~L~i~~C 631 (680)
.+..++. ..+..+++|+.|+++++
T Consensus 277 ~l~~~~~-~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 277 NLSSLPH-DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CCSCCCT-TSSTTCTTCCEEECCSS
T ss_pred cCCccCh-HHhccccCCCEEEccCC
Confidence 3444432 22345556655555443
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1.5e-15 Score=171.77 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=96.1
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+.++..+|... ...+++|++++|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++| .
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-P 92 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-c
Confidence 45566666777777432 35899999999999877432 444544 56666776666888888888888884 6
Q ss_pred cccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEecc
Q 041114 430 IKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRC 497 (680)
Q Consensus 430 i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~ 497 (680)
+..+ |..++.+++|++|++++| .+..++...++++++|++|++++|.. +..+..+++|+.|++..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred ccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 6555 567888888888888888 67777443478888888888887652 2344457777777776543
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=4.5e-16 Score=180.43 Aligned_cols=271 Identities=14% Similarity=0.140 Sum_probs=144.2
Q ss_pred ccccceEEEEeeccc-ccc--cccC--------CCCccc------cccccccch-hhhccCCcceEEEccCCCCccccch
Q 041114 374 KEWETVRRLSLMQNQ-IKI--LSEA--------PTCPHL------HYEFKMITD-GFFQFMPLLKVLNMSRETNIKELLG 435 (680)
Q Consensus 374 ~~~~~~r~lsl~~~~-~~~--l~~~--------~~~~~L------~~~l~~lp~-~~~~~l~~Lr~LdL~~~~~i~~lP~ 435 (680)
...+++++|.+.+|. +.. +|.. ..+++| ++.+..+|. ..|.++++|++|+|++| .+..+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp- 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE- 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-
Confidence 445677777777776 543 3321 111233 555666776 22677777777777774 666777
Q ss_pred hhhccCCCCEEeccCCCCccccchhhhcCCCC-CcEeeccCCcc---hhhhcCC--CCCceeEEEeccchhh-hhhhhch
Q 041114 436 ELKALVNLKCVNLEWARDLVTIPLEVISNFSK-LRVLRLFGTVL---AKELLGL--KHLEELDFTLRCVHSL-QILVSSN 508 (680)
Q Consensus 436 ~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~-L~~L~l~~~~~---~~~l~~L--~~L~~L~i~~~~~~~l-~~l~~~~ 508 (680)
.++.+++|++|+|++| .+..+|.. ++++++ |++|++++|.. +..+..+ ++|+.|+++.+..... ..++...
T Consensus 590 ~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6777777777777777 56677765 777776 77777776641 2222222 2255555554332211 1111000
Q ss_pred h--hhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCC--------cc------------CCC
Q 041114 509 K--LQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGT--------VL------------KSP 566 (680)
Q Consensus 509 ~--l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--------~l------------~~~ 566 (680)
. ...+|+.|+++++. +..++...+..+++|+.|+++++ .+..++....... .+ .|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG
T ss_pred ccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccchH
Confidence 0 01244555555443 22333222234444555555443 2222222111100 00 011
Q ss_pred CCC--CCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecC------cchhHhhhcCCCCCCCcccccCccccccCCCC
Q 041114 567 QPF--VFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDC------TAMEEIISAGKFVHTPEMMGNTMDPCAKLRKL 637 (680)
Q Consensus 567 ~~~--~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c------~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~l 637 (680)
.+. .+++|+.|+|++|..- .+| .++.+++|+.|+++++ .....+|. .++.+++|+.|++++|. +..+
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~-L~~I 821 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQLQIGSND-IRKV 821 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCS-SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-CCBC
T ss_pred HhhhccCCCcCEEEeCCCCCC-ccchhhhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCEEECCCCC-CCcc
Confidence 112 5677888888876533 344 4677888888888662 22223322 33668888888888875 5888
Q ss_pred CCCCccccCcceEEecc
Q 041114 638 PLDSNSALEHKIAIRGE 654 (680)
Q Consensus 638 P~~~~~~l~~L~i~~~~ 654 (680)
|......|+.|.+.+++
T Consensus 822 p~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 822 DEKLTPQLYILDIADNP 838 (876)
T ss_dssp CSCCCSSSCEEECCSCT
T ss_pred CHhhcCCCCEEECCCCC
Confidence 87655556666666664
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=5.2e-16 Score=173.39 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=98.6
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCcc
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIK 431 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~ 431 (680)
+...+.++..+|... .+++++|++++|.+..++.. ..+++| ++.+..+++..|.++++|++|||++| .+.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC
Confidence 334455666777533 36899999999988876432 445555 67777888777889999999999994 787
Q ss_pred ccchh-hhccCCCCEEeccCCCCcccc--chhhhcCCCCCcEeeccCCcch-----hhhcCCCCCceeEEEecc
Q 041114 432 ELLGE-LKALVNLKCVNLEWARDLVTI--PLEVISNFSKLRVLRLFGTVLA-----KELLGLKHLEELDFTLRC 497 (680)
Q Consensus 432 ~lP~~-i~~L~~Lr~L~L~~~~~l~~l--P~~~i~~L~~L~~L~l~~~~~~-----~~l~~L~~L~~L~i~~~~ 497 (680)
.+|.. ++.+++|++|++++| .+..+ |.. ++++++|++|++++|..+ ..+.++++|+.|++..+.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 77754 899999999999998 67744 554 888999999999877522 356677777777776443
No 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=165.07 Aligned_cols=216 Identities=20% Similarity=0.262 Sum_probs=104.0
Q ss_pred eEEEEeecccccccccCC--CCccc---cccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCC
Q 041114 379 VRRLSLMQNQIKILSEAP--TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWAR 452 (680)
Q Consensus 379 ~r~lsl~~~~~~~l~~~~--~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~ 452 (680)
.+.+...+..+..+|... ....| ++.+..++...|.++++|++|+|++| .+..++ ..+..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-
Confidence 345666666666555431 11111 44555555444556666666666663 555544 44555666666666665
Q ss_pred CccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcc
Q 041114 453 DLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSI 528 (680)
Q Consensus 453 ~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~ 528 (680)
.++.+|.+.+..+++|++|++++|.. ...+.+++ +|+.|+++++..+..+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--------------------------~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP--------------------------SLRRLDLGELKRLSYI 176 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT--------------------------TCCEEECCCCTTCCEE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc--------------------------ccCEeCCCCCCCccee
Confidence 45555554455566666666655531 11233344 4555555544444444
Q ss_pred cccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCC-C-CcCCCCCCCEEeEecCc
Q 041114 529 DVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGL-T-FLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 529 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~l~~c~ 606 (680)
+...+..+++|+.|+++++ .+..++ .+..+++|+.|+|++|. +..+ | .+..+++|++|+++++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n-~l~~~~------------~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n- 241 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMC-NLREIP------------NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS- 241 (440)
T ss_dssp CTTTTTTCSSCCEEECTTS-CCSSCC------------CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-
T ss_pred CcchhhcccccCeecCCCC-cCcccc------------ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-
Confidence 4334455555555555543 222221 11344555555555543 2222 1 2445555555555553
Q ss_pred chhHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 607 AMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 607 ~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
.+..++. ..+..+++|+.|+++++ +|..+|.
T Consensus 242 ~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~ 272 (440)
T 3zyj_A 242 QIQVIER-NAFDNLQSLVEINLAHN-NLTLLPH 272 (440)
T ss_dssp CCCEECT-TSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred ceeEECh-hhhcCCCCCCEEECCCC-CCCccCh
Confidence 2333322 22344555555555553 3445444
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=2.5e-15 Score=163.64 Aligned_cols=259 Identities=18% Similarity=0.179 Sum_probs=168.8
Q ss_pred EEEecCCCccccc--ccccccceEEEEeeccccc-cccc--CCCCccc------cccccccchhhhccCCcceEEEccCC
Q 041114 359 FLVCAGRGLKEAP--EVKEWETVRRLSLMQNQIK-ILSE--APTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRE 427 (680)
Q Consensus 359 ~~~~~~~~~~~~~--~~~~~~~~r~lsl~~~~~~-~l~~--~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~ 427 (680)
.+...+..+..++ ......++++|.+.++.+. .++. ...+++| ++.+..+++..|.++++|++|+|++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC
Confidence 3444444444432 2345578888888888764 3322 1334444 56666765555888888888888885
Q ss_pred CCccc-cchh--hhccCCCCEEeccCCCCcccc-chhhhcCCCCCcEeeccCCcc----hhhhc----------------
Q 041114 428 TNIKE-LLGE--LKALVNLKCVNLEWARDLVTI-PLEVISNFSKLRVLRLFGTVL----AKELL---------------- 483 (680)
Q Consensus 428 ~~i~~-lP~~--i~~L~~Lr~L~L~~~~~l~~l-P~~~i~~L~~L~~L~l~~~~~----~~~l~---------------- 483 (680)
.+.. .|.. ++.+++|++|++++| .+..+ |...++++++|++|++++|.. +..+.
T Consensus 114 -~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 114 -NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp -CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred -CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 6654 4544 788888888888888 67766 443367888888888887641 11111
Q ss_pred ------------------CCCCCceeEEEeccchh---------------------------------------------
Q 041114 484 ------------------GLKHLEELDFTLRCVHS--------------------------------------------- 500 (680)
Q Consensus 484 ------------------~L~~L~~L~i~~~~~~~--------------------------------------------- 500 (680)
.+++|+.|+++.+....
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG
T ss_pred ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccc
Confidence 22455555554332110
Q ss_pred -----hh----------h-hhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccC
Q 041114 501 -----LQ----------I-LVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLK 564 (680)
Q Consensus 501 -----l~----------~-l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~ 564 (680)
++ . .+.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..+.+..+
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~------ 343 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMF------ 343 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGG------
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCcChhHh------
Confidence 00 0 01112234578888888776 44443347889999999999986 5565555554
Q ss_pred CCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccccc
Q 041114 565 SPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAK 633 (680)
Q Consensus 565 ~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~ 633 (680)
..+++|++|+|++|......| .+..+++|++|+++++ .+..++.. .++.+++|+.|+++++|-
T Consensus 344 ----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 344 ----ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp ----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred ----cCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCCc
Confidence 578999999999987443333 5789999999999995 57776543 457899999999988763
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=1.1e-15 Score=172.93 Aligned_cols=237 Identities=17% Similarity=0.116 Sum_probs=100.0
Q ss_pred ceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEec
Q 041114 378 TVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNL 448 (680)
Q Consensus 378 ~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L 448 (680)
+++.+.+.++.+..++.. ..+++| ++.+..+|.. +..+++|++|++++| .+..+ |..++.+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccC-CcCcCchhhhhccCcCCEEEC
Confidence 677788777776654332 122222 3334444443 344444444444442 33333 234444444444444
Q ss_pred cCCCCccccchhhhcCCCCCcEeeccCCcc------hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEecc
Q 041114 449 EWARDLVTIPLEVISNFSKLRVLRLFGTVL------AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRF 522 (680)
Q Consensus 449 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~------~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~ 522 (680)
++|.....+|.+.++++++|++|++++|.. +..+..+++|+.|++..+....+ .+.....+++|+.|+++++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE--CTTTTTTCTTCSEEECTTC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC--CHHHhcCCccCCeEECCCC
Confidence 444211134333344444444444444431 22334444444444442221111 0111112234445554444
Q ss_pred CCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCC----CCCCcCCCCCCC
Q 041114 523 KDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLK----GLTFLVFAPNLK 598 (680)
Q Consensus 523 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~----~l~~l~~l~~L~ 598 (680)
.-....+...+..+++|+.|+++++. +....+.. +..+++|++|++++|.... ....+..+++|+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQL----------FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTT----------TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred cCCCcccchhhhCcccCCEEECCCCc-cCCcCHHH----------HhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 32111111124444555555554432 11111111 1345556666665554221 112244555666
Q ss_pred EEeEecCcchhHhhhcCCCCCCCcccccCcccc
Q 041114 599 CLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPC 631 (680)
Q Consensus 599 ~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C 631 (680)
+|++++|. +..++. ..++.+++|+.|++++|
T Consensus 480 ~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 480 ILVLSFCD-LSSIDQ-HAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp EEECTTSC-CCEECT-TTTTTCTTCCEEECCSS
T ss_pred EEECCCCc-cCccCh-hhhccccCCCEEECCCC
Confidence 66665543 333322 12345566666666555
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=1.7e-15 Score=164.74 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=113.2
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCcc
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIK 431 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~ 431 (680)
..+...+..+..+|......+++++.+.+|.+..++ ...+++| ++.+..+| ++.+++|++|++++| .+.
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~ 119 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLT 119 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCS
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCC
Confidence 344555555555665566678888888888887764 3334444 55666664 677888888888884 777
Q ss_pred ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchh--hhcCCCCCceeEEEeccchhhhhhhhchh
Q 041114 432 ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAK--ELLGLKHLEELDFTLRCVHSLQILVSSNK 509 (680)
Q Consensus 432 ~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~--~l~~L~~L~~L~i~~~~~~~l~~l~~~~~ 509 (680)
.+| ++.+++|++|++++| .++.+| ++.+++|++|++++|..+. .+..+++|+.|++..+....+. ..
T Consensus 120 ~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----l~ 188 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----VS 188 (457)
T ss_dssp CCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----CT
T ss_pred eec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-----cc
Confidence 776 778888888888888 677774 6788888888888775333 3566777888887755444332 12
Q ss_pred hhccccEEEEeccCCCCcccccccccCCCCCEEEEecc
Q 041114 510 LQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 510 l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
.+++|+.|+++++. +... .+..+++|+.|+++++
T Consensus 189 ~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 189 QNKLLNRLNCDTNN-ITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp TCTTCCEEECCSSC-CSCC---CCTTCTTCSEEECCSS
T ss_pred cCCCCCEEECcCCc-CCee---ccccCCCCCEEECcCC
Confidence 23467777777664 3332 3566677777777654
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=2.5e-16 Score=162.60 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=165.0
Q ss_pred ccccc---ccchhhhccCCcceEEEccCCCCc-cccchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCC
Q 041114 402 HYEFK---MITDGFFQFMPLLKVLNMSRETNI-KELLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 402 ~~~l~---~lp~~~~~~l~~Lr~LdL~~~~~i-~~lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~ 476 (680)
++.+. .+|+. |.++++|++|+|++++.+ ..+|..++++++|++|++++| .+. .+|.. ++++++|++|++++|
T Consensus 59 ~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 59 GLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN 135 (313)
T ss_dssp CCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS
T ss_pred CCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC
Confidence 44554 46766 899999999999952355 478999999999999999999 676 78886 999999999999998
Q ss_pred c----chhhhcCCCCCceeEEEeccchhhhhhhhchhhh-ccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcc
Q 041114 477 V----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQ-SCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELE 551 (680)
Q Consensus 477 ~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 551 (680)
. .+..+..+++|+.|++..+.... .++.....+ ++|+.|+++++.-....+ ..+..++ |+.|+++++ .+.
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~~L~Ls~N-~l~ 210 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LAFVDLSRN-MLE 210 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEE--ECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CSEEECCSS-EEE
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccC--cCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-ccEEECcCC-ccc
Confidence 5 45678899999999998554331 223222223 389999999886333444 3677776 999999975 444
Q ss_pred eeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccc
Q 041114 552 EWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPC 631 (680)
Q Consensus 552 ~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C 631 (680)
...+..+ ..+++|+.|++++|.....+|.+..+++|++|+++++.....+|. .++.+++|+.|+++++
T Consensus 211 ~~~~~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 211 GDASVLF----------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ECCGGGC----------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSS
T ss_pred CcCCHHH----------hcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCC
Confidence 3334333 578999999999988666677788999999999999654334443 3478999999999998
Q ss_pred ccCCCCCCC
Q 041114 632 AKLRKLPLD 640 (680)
Q Consensus 632 ~~L~~lP~~ 640 (680)
+--..+|..
T Consensus 279 ~l~~~ip~~ 287 (313)
T 1ogq_A 279 NLCGEIPQG 287 (313)
T ss_dssp EEEEECCCS
T ss_pred cccccCCCC
Confidence 644477765
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=162.05 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=150.4
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccc-hhhh
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELK 438 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~ 438 (680)
+...+..+..+|... .+++++|.+.+|.+. .+|...|.++++|++|+|++| .+..++ ..++
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~----------------~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 97 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT----------------YISNSDLQRCVNLQALVLTSN-GINTIEEDSFS 97 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCC----------------EECTTTTTTCTTCCEEECTTS-CCCEECTTTTT
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCc----------------ccCHHHhccCCCCCEEECCCC-ccCccCHhhcC
Confidence 444455566666422 247888888877766 445544677788888888874 676664 4577
Q ss_pred ccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--ch---hhhcCCCCCceeEEEeccchhhhhh-hhchhhhc
Q 041114 439 ALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LA---KELLGLKHLEELDFTLRCVHSLQIL-VSSNKLQS 512 (680)
Q Consensus 439 ~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~---~~l~~L~~L~~L~i~~~~~~~l~~l-~~~~~l~~ 512 (680)
++++|++|++++| .++.+|.+.++++++|++|++++|. .+ ..+..+++|+.|++..+. .+..+ +.....++
T Consensus 98 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 98 SLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD--TFTKIQRKDFAGLT 174 (353)
T ss_dssp TCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS--SCCEECTTTTTTCC
T ss_pred CCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc--cccccCHHHccCCC
Confidence 7888888888877 6777777656778888888887764 11 235667777777777442 11111 11222345
Q ss_pred cccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC---
Q 041114 513 CTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT--- 589 (680)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--- 589 (680)
+|+.|+++++. +.......+..+++|++|+++++. +..++.... ..+++|+.|++++|. +...+
T Consensus 175 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~----------~~~~~L~~L~L~~n~-l~~~~~~~ 241 (353)
T 2z80_A 175 FLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFV----------DVTSSVECLELRDTD-LDTFHFSE 241 (353)
T ss_dssp EEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHHHHHH----------HHTTTEEEEEEESCB-CTTCCCC-
T ss_pred CCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccchhhhh----------hhcccccEEECCCCc-cccccccc
Confidence 77888888776 333322467777888888887654 343333222 346788888888765 33322
Q ss_pred --CcCCCCCCCEEeEecCcc----hhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 590 --FLVFAPNLKCLSLFDCTA----MEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 590 --~l~~l~~L~~L~l~~c~~----l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
.....+.++.++++++.. +..++. .++.+++|+.|++++| +++.+|...
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~ 296 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGI 296 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cccccccchhhccccccccccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHH
Confidence 223456677777776532 222332 2356778888888876 477777654
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=4.6e-15 Score=164.55 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=104.5
Q ss_pred EEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCC
Q 041114 380 RRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWAR 452 (680)
Q Consensus 380 r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~ 452 (680)
+++.++++.+..+|.... +++ ++.+..+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-
Confidence 678899999998886532 343 77788888777999999999999995 88777 688999999999999999
Q ss_pred CccccchhhhcCCCCCcEeeccCCc-----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccc--cEEEEeccC
Q 041114 453 DLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCT--RALVLIRFK 523 (680)
Q Consensus 453 ~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L--~~L~l~~~~ 523 (680)
.++.+|.. .+++|++|++++|. .+..++++++|+.|++..+.... ..+.. +++| +.|+++++.
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~----l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLP----IAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGG----GTTSCEEEEEEEECT
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-hhccc----cccceeeEEEeeccc
Confidence 79999983 89999999999986 23678999999999998765443 11222 2233 666666553
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=5.9e-16 Score=175.74 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=56.1
Q ss_pred CCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecC------cchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc
Q 041114 570 VFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDC------TAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS 643 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c------~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~ 643 (680)
.+++|+.|+|++|.....++.++.+++|+.|+++++ .....+|. .++.+++|+.|++++|. +..+|.....
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~~ip~~~~~ 587 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSND-IRKVNEKITP 587 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSC-CCBCCSCCCT
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCc-CCccCHhHhC
Confidence 678888888888764442335778888898888643 22333332 34678889999998876 5888876555
Q ss_pred ccCcceEEecc
Q 041114 644 ALEHKIAIRGE 654 (680)
Q Consensus 644 ~l~~L~i~~~~ 654 (680)
.|+.|.+.+++
T Consensus 588 ~L~~L~Ls~N~ 598 (636)
T 4eco_A 588 NISVLDIKDNP 598 (636)
T ss_dssp TCCEEECCSCT
T ss_pred cCCEEECcCCC
Confidence 56666666664
No 41
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=172.42 Aligned_cols=135 Identities=21% Similarity=0.270 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCcc-cc----CChhhHHHHHHHhHhcCCchhHHHH
Q 041114 200 LELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSE-FA----GLVKEVYPLLKFSYDSLQNDVIRSC 274 (680)
Q Consensus 200 ~~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~-~~----~~~~~i~~~L~~Sy~~L~~~~lk~c 274 (680)
.+.+.+|+++|+|+||||..+|+.|+.+ ...|..+++.+.. ..+. +. .....+..++..||+.||+ +.|.|
T Consensus 307 ~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~-~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~ 382 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQN-KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDY 382 (591)
T ss_dssp CTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHS-CCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHH
T ss_pred cHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHH-hHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHH
Confidence 4678899999999999999999999884 2479999988887 4332 11 1234799999999999999 89999
Q ss_pred HHHhcccCCCcccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHccccccc---CcccEEechhHHHHHHHHH
Q 041114 275 FLYCCLYPEDFAILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEV---GDDKVKLHGVLHDMALWIS 349 (680)
Q Consensus 275 fl~~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~---~~~~~~mhdl~~d~a~~i~ 349 (680)
|++||+||+++.|+.+.++.+|.++ .+.+..++++|+++||++.. ....|+||+++|+++....
T Consensus 383 l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 383 YTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999999999999999999999654 24567899999999999865 2357999999999998873
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=3.2e-15 Score=167.77 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=36.2
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCC
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~ 476 (680)
+.+..+|+..|.++++|++|++++ +.+..+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTS
T ss_pred CcCCccCHhhhcCccccccccccc-cccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCC
Confidence 334444444445555555555555 24444443 3555555555555555 3443 4554 555666666665554
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.3e-15 Score=176.61 Aligned_cols=145 Identities=13% Similarity=0.176 Sum_probs=100.7
Q ss_pred cccccceEEEEeecccccc------------------cccCC---CCccc------cc-cccccchhhhccCCcceEEEc
Q 041114 373 VKEWETVRRLSLMQNQIKI------------------LSEAP---TCPHL------HY-EFKMITDGFFQFMPLLKVLNM 424 (680)
Q Consensus 373 ~~~~~~~r~lsl~~~~~~~------------------l~~~~---~~~~L------~~-~l~~lp~~~~~~l~~Lr~LdL 424 (680)
...+.+++.|.+.+|.+.. +|... .+++| ++ ....+|.. |.++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 3455788999999988887 66653 35555 33 34566755 788888999999
Q ss_pred cCCCCcc--ccchhhhccC-------CCCEEeccCCCCccccch--hhhcCCCCCcEeeccCCc--chhhhcCCCCCcee
Q 041114 425 SRETNIK--ELLGELKALV-------NLKCVNLEWARDLVTIPL--EVISNFSKLRVLRLFGTV--LAKELLGLKHLEEL 491 (680)
Q Consensus 425 ~~~~~i~--~lP~~i~~L~-------~Lr~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L 491 (680)
++|..+. .+|.++++|. +|++|+|++| .+..+|. . ++++++|++|++++|. .+..+..+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASAS-LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHH-HTTCTTCCEEECTTSCCCBCCCCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhh-hhcCCCCCEEECCCCCcccchhhcCCCcceEE
Confidence 8853265 4888888776 8888888888 6888887 6 8888888888888775 22256677777777
Q ss_pred EEEeccchhhhhhhhchhhhcc-ccEEEEeccC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSC-TRALVLIRFK 523 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~-L~~L~l~~~~ 523 (680)
++..+... .++.....+++ |+.|+++++.
T Consensus 601 ~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 601 KLDYNQIE---EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ECCSSCCS---CCCTTSCEECTTCCEEECCSSC
T ss_pred ECcCCccc---cchHHHhhccccCCEEECcCCC
Confidence 77754433 33332333345 7777777665
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=1.6e-15 Score=171.52 Aligned_cols=249 Identities=16% Similarity=0.101 Sum_probs=162.3
Q ss_pred cccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEE
Q 041114 373 VKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCV 446 (680)
Q Consensus 373 ~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L 446 (680)
.....+++.+.+.++.+..++....+++| ++.+..+|. + .+++|++|++++|..+... .++.+++|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence 44456778888888877777644444444 555667773 4 7788888888876444433 45677888888
Q ss_pred eccCCCCcccc---chhhhcCCCCCcEeeccCCc---chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEe
Q 041114 447 NLEWARDLVTI---PLEVISNFSKLRVLRLFGTV---LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLI 520 (680)
Q Consensus 447 ~L~~~~~l~~l---P~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~ 520 (680)
++++| .+..+ |.. ++.+++|++|++++|. .+..+..+++|+.|++..+........ .....+++|+.|+++
T Consensus 356 ~ls~n-~l~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 356 DLSRN-ALSFSGCCSYS-DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDIS 432 (606)
T ss_dssp ECCSS-CEEEEEECCHH-HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECT
T ss_pred ECcCC-ccCCCcchhhh-hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECc
Confidence 88887 56665 554 7788888888888775 234566777777777764433322111 122234578888888
Q ss_pred ccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCE
Q 041114 521 RFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKC 599 (680)
Q Consensus 521 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 599 (680)
++.-....+ ..+..+++|+.|+++++.......+..+ ..+++|+.|++++|.....+| .++.+++|++
T Consensus 433 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 433 YTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVF----------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCC----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHHhh----------ccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 876333333 3677888888888887643332223332 567888888888876444333 4678888888
Q ss_pred EeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc
Q 041114 600 LSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS 643 (680)
Q Consensus 600 L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~ 643 (680)
|++++|. +..+++ ..++.+++|+.|++++|. ++.+|..+..
T Consensus 502 L~Ls~N~-l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~ 542 (606)
T 3vq2_A 502 LNMSHNN-LLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQH 542 (606)
T ss_dssp EECCSSC-CSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGG
T ss_pred EECCCCc-CCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhh
Confidence 8888864 444422 234678888888888875 7788876433
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=6.2e-15 Score=165.14 Aligned_cols=133 Identities=24% Similarity=0.341 Sum_probs=101.2
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCC
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETN 429 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~ 429 (680)
..+...+..+..+|... .+++++|++++|.+..++.. ..+++| ++.+..++++.|.++++|++|||++ +.
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-Cc
Confidence 56777777788777533 37999999999999887642 445555 7788888777789999999999999 48
Q ss_pred ccccchhhhccCCCCEEeccCCCCccccc--hhhhcCCCCCcEeeccCCcch-hhhcCCCCC--ceeEEEec
Q 041114 430 IKELLGELKALVNLKCVNLEWARDLVTIP--LEVISNFSKLRVLRLFGTVLA-KELLGLKHL--EELDFTLR 496 (680)
Q Consensus 430 i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP--~~~i~~L~~L~~L~l~~~~~~-~~l~~L~~L--~~L~i~~~ 496 (680)
+..+|.. .+++|++|++++| .+..+| .. ++++++|++|+++++..- ..+..+++| +.|++..+
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred CCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence 8899977 8999999999999 688765 55 899999999999987521 223333444 66666544
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=158.53 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=140.7
Q ss_pred cccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---ch
Q 041114 404 EFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LA 479 (680)
Q Consensus 404 ~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~ 479 (680)
.+..+|.++ .++|++|++++ +.+..+|. .++++++|++|++++| .++.++.+.++++++|++|++++|. .+
T Consensus 42 ~l~~iP~~~---~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 42 SLNSIPSGL---TEAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TCSSCCTTC---CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred Ccccccccc---cccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 445677653 35899999999 58998885 7999999999999999 7998876559999999999999886 22
Q ss_pred h-hhcCCCCCceeEEEeccchhhhhhhh--chhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecc
Q 041114 480 K-ELLGLKHLEELDFTLRCVHSLQILVS--SNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTD 556 (680)
Q Consensus 480 ~-~l~~L~~L~~L~i~~~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 556 (680)
. .+.++++|+.|++..+... .++. ....+++|+.|+++++......+...+..+++|++|+++++. +..+.+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYK---TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCS---SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT
T ss_pred HhHhCCCccCCEEECCCCCCc---ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH
Confidence 3 3788999999998755433 3333 233456899999999865666654578889999999998764 4444344
Q ss_pred cCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHh
Q 041114 557 YTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEI 611 (680)
Q Consensus 557 ~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i 611 (680)
.+ ..+++|++|+++++. +..+|. +..+++|++|+++++. +..+
T Consensus 193 ~l----------~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 193 SL----------KSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp TT----------TTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTC
T ss_pred HH----------hccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccc
Confidence 33 578899999999876 455542 3468999999999864 4443
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=7.6e-15 Score=149.34 Aligned_cols=213 Identities=18% Similarity=0.167 Sum_probs=119.2
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCcccc-chhhh
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELK 438 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~ 438 (680)
+...+.++..+|.. ...++++|.+.++.+. .+++..|..+++|++|+|++| .+..+ |..++
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~----------------~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~ 77 (285)
T 1ozn_A 16 TSCPQQGLQAVPVG-IPAASQRIFLHGNRIS----------------HVPAASFRACRNLTILWLHSN-VLARIDAAAFT 77 (285)
T ss_dssp EECCSSCCSSCCTT-CCTTCSEEECTTSCCC----------------EECTTTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred EEcCcCCcccCCcC-CCCCceEEEeeCCcCC----------------ccCHHHcccCCCCCEEECCCC-ccceeCHhhcC
Confidence 33444455555432 2356677777666654 445445777888888888884 67666 56788
Q ss_pred ccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccc
Q 041114 439 ALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCT 514 (680)
Q Consensus 439 ~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L 514 (680)
.+++|++|++++|..++.++...+..+++|++|++++|.. +..+..+++|+.|++..+....+. +.....+++|
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L 155 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNL 155 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTC
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC--HhHhccCCCc
Confidence 8888888888888337777444478888888888887651 233555666666666533222111 0111223355
Q ss_pred cEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCC--cC
Q 041114 515 RALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTF--LV 592 (680)
Q Consensus 515 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~ 592 (680)
+.|+++++. +...+...+..+++|+.|+++++ .+..+.+..+ ..+++|+.|++++|. +..++. +.
T Consensus 156 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~----------~~l~~L~~L~l~~n~-l~~~~~~~~~ 222 (285)
T 1ozn_A 156 THLFLHGNR-ISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAF----------RDLGRLMTLYLFANN-LSALPTEALA 222 (285)
T ss_dssp CEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT----------TTCTTCCEEECCSSC-CSCCCHHHHT
T ss_pred cEEECCCCc-ccccCHHHhcCccccCEEECCCC-cccccCHhHc----------cCcccccEeeCCCCc-CCcCCHHHcc
Confidence 555555553 33333334555556666666543 2333322222 345556666665543 333332 45
Q ss_pred CCCCCCEEeEecC
Q 041114 593 FAPNLKCLSLFDC 605 (680)
Q Consensus 593 ~l~~L~~L~l~~c 605 (680)
.+++|++|+++++
T Consensus 223 ~l~~L~~L~l~~N 235 (285)
T 1ozn_A 223 PLRALQYLRLNDN 235 (285)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCcccCEEeccCC
Confidence 5555666655554
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=9.3e-16 Score=158.69 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=156.2
Q ss_pred ccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGL 485 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L 485 (680)
..+...+..+++|++|+|++| .+..+| ..++.+++|++|++++| .+..+++ ++.+++|++|++++|. +.++...
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~~ 98 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNY-VQELLVG 98 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSE-EEEEEEC
T ss_pred hhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCc-cccccCC
Confidence 455555777888999999994 777766 67899999999999998 6887776 8899999999998875 4455566
Q ss_pred CCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCC
Q 041114 486 KHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKS 565 (680)
Q Consensus 486 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 565 (680)
++|+.|++..+....+. . ...++|+.|+++++. +...+...+..+++|+.|+++++ .+..+.+....
T Consensus 99 ~~L~~L~l~~n~l~~~~---~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~------ 165 (317)
T 3o53_A 99 PSIETLHAANNNISRVS---C--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA------ 165 (317)
T ss_dssp TTCCEEECCSSCCSEEE---E--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG------
T ss_pred CCcCEEECCCCccCCcC---c--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHh------
Confidence 88888888754433322 1 124578899998876 44444346778889999999875 45555444331
Q ss_pred CCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcccc
Q 041114 566 PQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSAL 645 (680)
Q Consensus 566 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l 645 (680)
..+++|++|++++|. ++.++....+++|++|+++++ .+..++.. +..+++|+.|++++| +++.+|..+.. +
T Consensus 166 ---~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~-l 236 (317)
T 3o53_A 166 ---ASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRF-S 236 (317)
T ss_dssp ---GGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCC-C
T ss_pred ---hccCcCCEEECCCCc-CcccccccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhc-C
Confidence 356888999998876 555566667888999999885 46666443 467888888888886 57788866544 4
Q ss_pred CcceEEec
Q 041114 646 EHKIAIRG 653 (680)
Q Consensus 646 ~~L~i~~~ 653 (680)
..|+..+.
T Consensus 237 ~~L~~L~l 244 (317)
T 3o53_A 237 QNLEHFDL 244 (317)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 44444443
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=4.4e-15 Score=161.38 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=106.7
Q ss_pred cccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEE
Q 041114 373 VKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCV 446 (680)
Q Consensus 373 ~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L 446 (680)
....++++++++.++.+..+|....+++| ++.+..+| ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 34457999999999999877644445554 55666665 677888888888884 677775 7788888888
Q ss_pred eccCCCCccccchhhhcCCCCCcEeeccCCcch-hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCC
Q 041114 447 NLEWARDLVTIPLEVISNFSKLRVLRLFGTVLA-KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDS 525 (680)
Q Consensus 447 ~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~-~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~ 525 (680)
++++| .++.+| ++.+++|++|++++|..- -.+..+++|+.|++..+. .+..+ . ...+++|+.|+++++. +
T Consensus 112 ~L~~N-~l~~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~--~~~~~-~-~~~l~~L~~L~ls~n~-l 182 (457)
T 3bz5_A 112 NCDTN-KLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNK--KITKL-D-VTPQTQLTTLDCSFNK-I 182 (457)
T ss_dssp ECCSS-CCSCCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCS--CCCCC-C-CTTCTTCCEEECCSSC-C
T ss_pred ECCCC-cCCeec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCC--ccccc-c-cccCCcCCEEECCCCc-c
Confidence 88888 677775 677888888888876521 135667777777776432 11111 1 1234578888888775 4
Q ss_pred CcccccccccCCCCCEEEEecc
Q 041114 526 KSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 526 ~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
..++ +..+++|+.|+++++
T Consensus 183 ~~l~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 183 TELD---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CCCC---CTTCTTCCEEECCSS
T ss_pred ceec---cccCCCCCEEECcCC
Confidence 4443 667788888888764
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=7.2e-15 Score=164.85 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=112.2
Q ss_pred ccEEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCC
Q 041114 357 ENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRET 428 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~ 428 (680)
...+...+.++..+|.. -..++++|++++|.+..++.. ..+++| ++.+..+++..|.++++|++|+|++|
T Consensus 9 ~~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n- 86 (570)
T 2z63_A 9 NITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86 (570)
T ss_dssp TTEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CcEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-
Confidence 34566667777778753 236899999999999887643 455555 66788888888999999999999994
Q ss_pred Cccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc-----chhhhcCCCCCceeEEEecc
Q 041114 429 NIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFTLRC 497 (680)
Q Consensus 429 ~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~~~~ 497 (680)
.+..+| ..++.+++|++|++++| .+..+|...++++++|++|++++|. .+..++++++|+.|++..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 788777 67999999999999999 7999987448999999999999885 36678899999999987544
No 51
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=2.5e-15 Score=174.56 Aligned_cols=243 Identities=14% Similarity=0.003 Sum_probs=162.5
Q ss_pred ccccc-ccchhhhccCCcceEEEccCCCCcc-ccchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc-
Q 041114 402 HYEFK-MITDGFFQFMPLLKVLNMSRETNIK-ELLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV- 477 (680)
Q Consensus 402 ~~~l~-~lp~~~~~~l~~Lr~LdL~~~~~i~-~lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~- 477 (680)
++.+. .+|.. |..+++|++|+|++| .+. .+|..++.+++|++|++++| .+. .+|.. ++.+++|++|++++|.
T Consensus 403 ~n~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 403 NNGFTGKIPPT-LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLETLILDFNDL 478 (768)
T ss_dssp SSEEEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCccccccCHH-HhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCC-cccCcCCHH-HcCCCCceEEEecCCcc
Confidence 44444 34544 788899999999985 554 67888899999999999988 455 67776 8889999999998875
Q ss_pred ---chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceee
Q 041114 478 ---LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWK 554 (680)
Q Consensus 478 ---~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 554 (680)
.+..+.++++|+.|++..+... ..++.....+++|+.|+++++.-....| ..+..+++|+.|+++++.....++
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLT--GEIPKWIGRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCC
T ss_pred cCcCCHHHhcCCCCCEEEccCCccC--CcCChHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCC
Confidence 4556788888988888755433 1233334445689999999887544555 378889999999998765433333
Q ss_pred cccCCC-----------------------------------------------------------CccCCCCCCCCCCcc
Q 041114 555 TDYTSG-----------------------------------------------------------TVLKSPQPFVFCSLH 575 (680)
Q Consensus 555 ~~~~~~-----------------------------------------------------------~~l~~~~~~~l~~L~ 575 (680)
...... .+..|+.+..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 221110 011233445677888
Q ss_pred EEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc--ccCcceEEe
Q 041114 576 KVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS--ALEHKIAIR 652 (680)
Q Consensus 576 ~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~--~l~~L~i~~ 652 (680)
.|+|++|.....+| .++.+++|+.|+++++.....+|.. ++.+++|+.|+++++.--..+|..+.. .|+.|.+.+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE--VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH--HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 88888876555555 4778888888888875543345442 367888888888876543466655443 244444443
Q ss_pred c
Q 041114 653 G 653 (680)
Q Consensus 653 ~ 653 (680)
+
T Consensus 714 N 714 (768)
T 3rgz_A 714 N 714 (768)
T ss_dssp S
T ss_pred C
Confidence 3
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=3.8e-15 Score=173.00 Aligned_cols=257 Identities=19% Similarity=0.152 Sum_probs=113.2
Q ss_pred cccceEEEEeeccccc-ccccCC--CCccc------cccccccchhhhccCCcceEEEccCCCCcc-ccchh-hhccCCC
Q 041114 375 EWETVRRLSLMQNQIK-ILSEAP--TCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIK-ELLGE-LKALVNL 443 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~-~l~~~~--~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~-~lP~~-i~~L~~L 443 (680)
...+++++.+.+|.+. .+|... .+++| ++.+....+..|..+++|++|+|++| .+. .+|.. ++.+++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCC
Confidence 3455666666666554 333321 12333 33343222223566666666666663 443 55544 6666666
Q ss_pred CEEeccCCCCcc-ccchhhhcCCC-CCcEeeccCCcc----hhhhcC--CCCCceeEEEeccchhhhhhhhchhhhcccc
Q 041114 444 KCVNLEWARDLV-TIPLEVISNFS-KLRVLRLFGTVL----AKELLG--LKHLEELDFTLRCVHSLQILVSSNKLQSCTR 515 (680)
Q Consensus 444 r~L~L~~~~~l~-~lP~~~i~~L~-~L~~L~l~~~~~----~~~l~~--L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~ 515 (680)
++|++++| .+. .+|.. ++++. +|++|++++|.. +..+.. +++|+.|++..+.... .++.....+++|+
T Consensus 346 ~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 346 KVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG--KIPPTLSNCSELV 421 (768)
T ss_dssp CEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--ECCGGGGGCTTCC
T ss_pred CEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--ccCHHHhcCCCCC
Confidence 66666666 343 55554 55554 555555555431 222222 4445555544222110 1122222233555
Q ss_pred EEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCC-------------CccCCCCCCCCCCccEEeeeCC
Q 041114 516 ALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSG-------------TVLKSPQPFVFCSLHKVTITFC 582 (680)
Q Consensus 516 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-------------~~l~~~~~~~l~~L~~L~L~~c 582 (680)
.|+++++.-....+ ..+..+++|+.|+++++.....++...... .+..|..+..+++|+.|+|++|
T Consensus 422 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 500 (768)
T 3rgz_A 422 SLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500 (768)
T ss_dssp EEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECcCCcccCccc-HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC
Confidence 55555553222222 245555555555555443222211111000 0001111234455555555555
Q ss_pred CCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 583 PKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 583 ~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
.....+| +++.+++|++|++++|.....+|. .++.+++|+.|++++|+--..+|.
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCG
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCCh
Confidence 4333333 345555555555555433223322 124455555555555543334444
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.59 E-value=2.8e-15 Score=170.16 Aligned_cols=263 Identities=14% Similarity=0.152 Sum_probs=151.8
Q ss_pred cccceEEEEeecccccc-cccC-CCCccc------ccc-cc--ccchhhhccC------CcceEEEccCCCCccccch--
Q 041114 375 EWETVRRLSLMQNQIKI-LSEA-PTCPHL------HYE-FK--MITDGFFQFM------PLLKVLNMSRETNIKELLG-- 435 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~-l~~~-~~~~~L------~~~-l~--~lp~~~~~~l------~~Lr~LdL~~~~~i~~lP~-- 435 (680)
...++++|.+.+|.+.. +|.. ..+++| ++. +. .+|.. +..+ ++|++|++++| .+..+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCccCchh
Confidence 46788888888887543 4432 334444 343 54 36665 4444 77888888874 6777777
Q ss_pred hhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc---chhhhcCCCC-CceeEEEeccchhhhhhhhchhh
Q 041114 436 ELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV---LAKELLGLKH-LEELDFTLRCVHSLQILVSSNKL 510 (680)
Q Consensus 436 ~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~---~~~~l~~L~~-L~~L~i~~~~~~~l~~l~~~~~l 510 (680)
.++++++|++|++++| .+. .+| . ++.+++|++|++++|. .+..+.++++ |+.|++..+... .++.....
T Consensus 325 ~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~---~lp~~~~~ 398 (636)
T 4eco_A 325 SLQKMKKLGMLECLYN-QLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK---YIPNIFDA 398 (636)
T ss_dssp HHTTCTTCCEEECCSC-CCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS---SCCSCCCT
T ss_pred hhccCCCCCEEeCcCC-cCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc---ccchhhhh
Confidence 7888888888888887 566 777 4 7777788888877764 3445666666 777777644433 22322221
Q ss_pred h--ccccEEEEeccCCC------------------------------CcccccccccCCCCCEEEEeccCCcceeecccC
Q 041114 511 Q--SCTRALVLIRFKDS------------------------------KSIDVIALARLKHLSTLHFSKCEELEEWKTDYT 558 (680)
Q Consensus 511 ~--~~L~~L~l~~~~~~------------------------------~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (680)
. .+|+.|+++++.-. ..++...+..+++|+.|+++++. +..++....
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHh
Confidence 1 14555555544322 22222222334555555554432 223322221
Q ss_pred CCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcC--CCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccc-----
Q 041114 559 SGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLV--FAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDP----- 630 (680)
Q Consensus 559 ~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~--~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~----- 630 (680)
.. ..+....+++|+.|+|++|. ++.+| .+. .+++|++|+++++. +..+|.. ++.+++|+.|++++
T Consensus 478 ~~---~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 478 KD---ENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ--PLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp EE---TTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG--GGGCSSCCEEECCSCBCTT
T ss_pred cc---ccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChh--hhcCCCCCEEECCCCcccc
Confidence 10 00001123388999998876 44555 344 88999999998854 5555443 36789999998854
Q ss_pred -cccCCCCCCCCcc--ccCcceEEec
Q 041114 631 -CAKLRKLPLDSNS--ALEHKIAIRG 653 (680)
Q Consensus 631 -C~~L~~lP~~~~~--~l~~L~i~~~ 653 (680)
+.-...+|..+.. .|+.|.+.++
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred cCcccccChHHHhcCCCCCEEECCCC
Confidence 4445567766544 3444444444
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.2e-14 Score=149.63 Aligned_cols=188 Identities=20% Similarity=0.254 Sum_probs=135.8
Q ss_pred cccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCc
Q 041114 375 EWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDL 454 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l 454 (680)
..++++++++.++.+.. +|. +..+++|++|+|++| .+..+|. ++.+++|++|++++| .+
T Consensus 39 ~l~~L~~L~l~~~~i~~----------------l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n-~l 97 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT----------------IEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGN-PL 97 (308)
T ss_dssp HHHTCCEEECTTSCCCC----------------CTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSC-CC
T ss_pred HcCCcCEEEeeCCCccC----------------chh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCC-cC
Confidence 45688999988887663 332 678999999999994 8888887 899999999999999 69
Q ss_pred cccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccc
Q 041114 455 VTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIA 532 (680)
Q Consensus 455 ~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~ 532 (680)
+.+|. ++.+++|++|++++|. .+..+..+++|+.|++..+....+..+ ..+++|+.|+++++. +...+ .
T Consensus 98 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~~~~--~ 168 (308)
T 1h6u_A 98 KNVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQ-VSDLT--P 168 (308)
T ss_dssp SCCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSC-CCCCG--G
T ss_pred CCchh--hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccc----cCCCCccEEEccCCc-CCCCh--h
Confidence 88875 8999999999999886 344577778888888775544443332 223477888887775 44443 3
Q ss_pred cccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCc
Q 041114 533 LARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 533 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~ 606 (680)
+..+++|+.|+++++ .+..++. + ..+++|++|++++|. +..++.+..+++|+.|++++++
T Consensus 169 l~~l~~L~~L~l~~n-~l~~~~~--l----------~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 LANLSKLTTLKADDN-KISDISP--L----------ASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG--G----------GGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred hcCCCCCCEEECCCC-ccCcChh--h----------cCCCCCCEEEccCCc-cCccccccCCCCCCEEEccCCe
Confidence 677778888888765 3343321 1 466778888888765 4555567778888888887743
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=4.8e-15 Score=146.65 Aligned_cols=195 Identities=15% Similarity=0.045 Sum_probs=114.4
Q ss_pred cceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC-Cc----chhhhcCCCCCcee
Q 041114 418 LLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG-TV----LAKELLGLKHLEEL 491 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~-~~----~~~~l~~L~~L~~L 491 (680)
+|++|++++ +.++.+|. .++.+++|++|++++|..++.+|...++++++|++|++++ +. ....+.++++|+.|
T Consensus 32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 677777777 46777664 5667777777777777227777664467777777777776 32 11234455666666
Q ss_pred EEEeccchhhhhhhhchhhhcccc---EEEEeccCCCCcccccccccCCCCC-EEEEeccCCcceeecccCCCCccCCCC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSCTR---ALVLIRFKDSKSIDVIALARLKHLS-TLHFSKCEELEEWKTDYTSGTVLKSPQ 567 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~l~~~~ 567 (680)
++..+....+..+ ..+.+|+ .|+++++..+..++...+..+++|+ .|+++++ .++.++....
T Consensus 111 ~l~~n~l~~lp~~----~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~--------- 176 (239)
T 2xwt_C 111 GIFNTGLKMFPDL----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAF--------- 176 (239)
T ss_dssp EEEEECCCSCCCC----TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTT---------
T ss_pred eCCCCCCcccccc----ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhc---------
Confidence 6654433332221 1122444 7777776445555544567777777 7777654 4444443322
Q ss_pred CCCCCCccEEeeeCCCCCCCCC--CcCCC-CCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccC
Q 041114 568 PFVFCSLHKVTITFCPKLKGLT--FLVFA-PNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKL 634 (680)
Q Consensus 568 ~~~l~~L~~L~L~~c~~l~~l~--~l~~l-~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L 634 (680)
..++|+.|++++|..++.+| .+..+ ++|+.|++++ +.++.++. ..+++|+.|.+.+++.|
T Consensus 177 --~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 --NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNTWTL 239 (239)
T ss_dssp --TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC---
T ss_pred --CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCCh----hHhccCceeeccCccCC
Confidence 12577777777765455554 25566 7777777777 44555543 24677777777666543
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=5.5e-15 Score=152.11 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=159.1
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCce
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEE 490 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~ 490 (680)
+..+++|++|++++ ..+..+| .+..+++|++|++++| .+..+|. ++.+++|++|++++|. .+..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeC-CCccCch-hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence 45688999999999 4898888 7999999999999999 7999998 8999999999999986 4567888999999
Q ss_pred eEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCC
Q 041114 491 LDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFV 570 (680)
Q Consensus 491 L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~ 570 (680)
|++..+....+..+ ..+++|+.|+++++. +...+ .+..+++|+.|+++++ .+..++. + ..
T Consensus 112 L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~l~~n-~l~~~~~--l----------~~ 171 (308)
T 1h6u_A 112 LDLTSTQITDVTPL----AGLSNLQVLYLDLNQ-ITNIS--PLAGLTNLQYLSIGNA-QVSDLTP--L----------AN 171 (308)
T ss_dssp EECTTSCCCCCGGG----TTCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--G----------TT
T ss_pred EECCCCCCCCchhh----cCCCCCCEEECCCCc-cCcCc--cccCCCCccEEEccCC-cCCCChh--h----------cC
Confidence 99986655544332 334589999999986 44444 4889999999999986 4454322 2 57
Q ss_pred CCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 571 FCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 571 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
+++|+.|++++|. +..++.+..+++|++|++++|. +..++. +..+++|+.|++++++ +...|...
T Consensus 172 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~-i~~~~~~~ 236 (308)
T 1h6u_A 172 LSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQT-ITNQPVFY 236 (308)
T ss_dssp CTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEE-EECCCEEC
T ss_pred CCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCe-eecCCeee
Confidence 8999999999976 6777778999999999999964 555543 4789999999998876 66666533
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=8.3e-15 Score=149.06 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=149.5
Q ss_pred cccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc-----h
Q 041114 406 KMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL-----A 479 (680)
Q Consensus 406 ~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~-----~ 479 (680)
..+|.+ -.++|++|++++ +.+..+| ..++.+++|++|++++| .+..++...++.+++|++|++++|.. +
T Consensus 24 ~~ip~~---~~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 24 QAVPVG---IPAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp SSCCTT---CCTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred ccCCcC---CCCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 355654 247899999999 5888888 56999999999999999 78888544499999999999999852 3
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
..+..+++|+.|++..+....+. +.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~- 173 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAF- 173 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTT-
T ss_pred HHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHHHh-
Confidence 45677889999988754433221 2222335588999998876 44555446788899999999875 5555544433
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCC-CCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGL-TFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
..+++|+.|++++|...... ..+..+++|+.|+++++ .+..++.. .++.+++|+.|+++++|
T Consensus 174 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 174 ---------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred ---------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence 56789999999987643332 35778899999999885 45555432 23668888888877765
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=6.1e-14 Score=157.05 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=105.8
Q ss_pred ceEEEEeecccccccccCC--CCccc---cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCC
Q 041114 378 TVRRLSLMQNQIKILSEAP--TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWA 451 (680)
Q Consensus 378 ~~r~lsl~~~~~~~l~~~~--~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~ 451 (680)
..+++.+.++.+..+|... ....| ++.+..+++..|.++++|++|+|++| .+..+ |..++.+++|++|+|++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 4489999999999888642 22233 77888999877999999999999995 88887 577999999999999999
Q ss_pred CCccccchhhhcCCCCCcEeeccCCcc-----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccC
Q 041114 452 RDLVTIPLEVISNFSKLRVLRLFGTVL-----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 452 ~~l~~lP~~~i~~L~~L~~L~l~~~~~-----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~ 523 (680)
.++.+|.. .+++|++|++++|.. +..+.++++|+.|+++.+.... ..+.....+ +|+.|+++++.
T Consensus 111 -~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L--~L~~L~L~~n~ 180 (562)
T 3a79_B 111 -RLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL--HLSCILLDLVS 180 (562)
T ss_dssp -CCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS--CEEEEEEEESS
T ss_pred -cCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc--eeeEEEeeccc
Confidence 79999983 899999999999862 3578899999999998655432 112222211 33667666654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=9e-15 Score=150.42 Aligned_cols=212 Identities=13% Similarity=0.080 Sum_probs=155.4
Q ss_pred ccccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCcccc---chhhhcCCCCCcEeeccCCc---
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTI---PLEVISNFSKLRVLRLFGTV--- 477 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~l---P~~~i~~L~~L~~L~l~~~~--- 477 (680)
+..+|..+ .++|++|+|++ +.+..+|.. ++++++|++|++++| .+..+ |.. +..+++|++|++++|.
T Consensus 19 l~~ip~~~---~~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~ 92 (306)
T 2z66_A 19 LTSVPTGI---PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT 92 (306)
T ss_dssp CSSCCSCC---CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSCSEEE
T ss_pred cccCCCCC---CCCCCEEECCC-CccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCCcccc
Confidence 34566542 36899999999 589999966 689999999999999 68766 565 7789999999999986
Q ss_pred chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeeccc
Q 041114 478 LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDY 557 (680)
Q Consensus 478 ~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 557 (680)
.+..+..+++|+.|++..+....+.... ....+++|+.|+++++.- .......+..+++|++|+++++.......+..
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTT-TTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ChhhcCCCCCCCEEECCCCcccccccch-hhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCccccccchhH
Confidence 3445778999999998755443332211 223345899999998863 33333468889999999999864333222333
Q ss_pred CCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCC
Q 041114 558 TSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRK 636 (680)
Q Consensus 558 ~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~ 636 (680)
+ ..+++|++|++++|......| .+..+++|++|+++++. +..++.. .++.+++|+.|++++|+ +..
T Consensus 171 ~----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~ 237 (306)
T 2z66_A 171 F----------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH-IMT 237 (306)
T ss_dssp C----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC-CCB
T ss_pred H----------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC-Ccc
Confidence 3 678999999999986433333 57889999999999954 5555332 34779999999999986 444
Q ss_pred C
Q 041114 637 L 637 (680)
Q Consensus 637 l 637 (680)
.
T Consensus 238 ~ 238 (306)
T 2z66_A 238 S 238 (306)
T ss_dssp C
T ss_pred c
Confidence 3
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=6.5e-14 Score=157.01 Aligned_cols=243 Identities=17% Similarity=0.136 Sum_probs=150.2
Q ss_pred ccEEEecCCCcccccccccccceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCc
Q 041114 357 ENFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNI 430 (680)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i 430 (680)
...+...+..+..+|.... ++++.|.+.+|.+..+|. .+++| ++.+..+|. .+++|++|+|++ +.+
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~-N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS-NPL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECS-CCC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcC-CcC
Confidence 3566667777777775433 789999999999988776 33444 666777776 578888888888 478
Q ss_pred cccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhh-cCCCCCceeEEEeccchhhhhhhhchh
Q 041114 431 KELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKEL-LGLKHLEELDFTLRCVHSLQILVSSNK 509 (680)
Q Consensus 431 ~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l-~~L~~L~~L~i~~~~~~~l~~l~~~~~ 509 (680)
..+|. .+.+|++|++++| .++.+|.. +++|++|++++|.. ..+ ..+.+|+.|.+..+....+ + .
T Consensus 114 ~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l---~---~ 178 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSL---P---M 178 (622)
T ss_dssp CCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCC---C---C
T ss_pred CCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCCCC---c---c
Confidence 88876 6678888888888 68888863 37888888887742 222 2345666666654433332 2 2
Q ss_pred hhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC
Q 041114 510 LQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 510 l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~ 589 (680)
..++|+.|+++++. +..++. .+++|+.|+++++ .+..++ ..+++|+.|++++|. ++.+|
T Consensus 179 ~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N-~l~~l~--------------~~~~~L~~L~Ls~N~-L~~lp 237 (622)
T 3g06_A 179 LPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNN-RLTSLP--------------ALPSGLKELIVSGNR-LTSLP 237 (622)
T ss_dssp CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSSCC--------------CCCTTCCEEECCSSC-CSCCC
T ss_pred cCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCC-cccccC--------------CCCCCCCEEEccCCc-cCcCC
Confidence 34577777777765 333331 2356777777654 233221 123566777776653 45555
Q ss_pred CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCccccCcceEEec
Q 041114 590 FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALEHKIAIRG 653 (680)
Q Consensus 590 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~ 653 (680)
..+++|++|+++++ .+..++. .+++|+.|++++| +|+.+|..+.. +.+|...+.
T Consensus 238 --~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~-l~~L~~L~L 291 (622)
T 3g06_A 238 --VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIH-LSSETTVNL 291 (622)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGG-SCTTCEEEC
T ss_pred --CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhh-ccccCEEEe
Confidence 45566777777664 3444433 3566666666665 46666654433 444444433
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=3.1e-14 Score=161.69 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=81.6
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCc
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNI 430 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i 430 (680)
.+.+.+.++..+|... ..++++|.+++|.+..++.. ..+++| ++.+..+|++.|.++++|++|+|++| .+
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PI 112 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cC
Confidence 3445566677776432 25788888888888887643 445555 66777887777888888888888884 77
Q ss_pred cccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC
Q 041114 431 KELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 431 ~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 476 (680)
+.+|. .+++|++|++|+|++| .++.+|...+++|++|++|++++|
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS
T ss_pred CCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC
Confidence 77774 4677888888888887 677777655677777777777653
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.5e-14 Score=143.01 Aligned_cols=206 Identities=15% Similarity=0.149 Sum_probs=150.8
Q ss_pred cccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCE
Q 041114 367 LKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKC 445 (680)
Q Consensus 367 ~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~ 445 (680)
+..+|. -..+++++.+.+|.+. .+|+..|..+++|++|++++|..+..+|. .++.+++|++
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~----------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~ 84 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLR----------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCS----------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCE
T ss_pred ccccCC--CCCcccEEEEeCCcce----------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcE
Confidence 455555 3357888888888776 45665588899999999999534888885 6889999999
Q ss_pred EeccC-CCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCc---eeEEEeccchhhhhhhh-chhhhcccc-EE
Q 041114 446 VNLEW-ARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLE---ELDFTLRCVHSLQILVS-SNKLQSCTR-AL 517 (680)
Q Consensus 446 L~L~~-~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~---~L~i~~~~~~~l~~l~~-~~~l~~~L~-~L 517 (680)
|++++ + .++.+|...++.+++|++|++++|. .+..+..+++|+ .|++..+ ..+..++. ....+++|+ .|
T Consensus 85 L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N--~~l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 85 IEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN--PYMTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp EEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESC--TTCCEECTTTTTTTBSSEEEE
T ss_pred EECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCC--cchhhcCcccccchhcceeEE
Confidence 99998 6 7999987668899999999999875 223355666666 8888754 12222222 123456899 99
Q ss_pred EEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCC-CCccEEeeeCCCCCCCCCCcCCCCC
Q 041114 518 VLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF-CSLHKVTITFCPKLKGLTFLVFAPN 596 (680)
Q Consensus 518 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l-~~L~~L~L~~c~~l~~l~~l~~l~~ 596 (680)
+++++. +..++...+.. ++|+.|+++++..++.++...+ ..+ ++|+.|+++++. ++.+|.- .+++
T Consensus 162 ~l~~n~-l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~----------~~l~~~L~~L~l~~N~-l~~l~~~-~~~~ 227 (239)
T 2xwt_C 162 KLYNNG-FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAF----------GGVYSGPSLLDVSQTS-VTALPSK-GLEH 227 (239)
T ss_dssp ECCSCC-CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTT----------TTCSBCCSEEECTTCC-CCCCCCT-TCTT
T ss_pred EcCCCC-CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHh----------hccccCCcEEECCCCc-cccCChh-Hhcc
Confidence 998876 55666434444 8999999998766777755554 567 899999999965 6666643 8999
Q ss_pred CCEEeEecCcc
Q 041114 597 LKCLSLFDCTA 607 (680)
Q Consensus 597 L~~L~l~~c~~ 607 (680)
|+.|++.++..
T Consensus 228 L~~L~l~~~~~ 238 (239)
T 2xwt_C 228 LKELIARNTWT 238 (239)
T ss_dssp CSEEECTTC--
T ss_pred CceeeccCccC
Confidence 99999988653
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.55 E-value=2.2e-14 Score=160.11 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=88.6
Q ss_pred EEEecCCCccccc--ccccccceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCC
Q 041114 359 FLVCAGRGLKEAP--EVKEWETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRET 428 (680)
Q Consensus 359 ~~~~~~~~~~~~~--~~~~~~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~ 428 (680)
.+...+..+..++ ......++++|.+.+|.+..++.. ..+++| ++.+..+|+..|+++++|++|+|++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n- 108 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN- 108 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-
Confidence 3444444444442 234567899999999998887642 444555 77788888888899999999999995
Q ss_pred Cccc--cchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 429 NIKE--LLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 429 ~i~~--lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.+.. .|..++++++|++|++++|..+..+|...++++++|++|++++|.
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 7774 467889999999999999854788875448889999999988764
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.55 E-value=7.2e-14 Score=163.98 Aligned_cols=269 Identities=17% Similarity=0.118 Sum_probs=167.8
Q ss_pred EEEEeecccccccccC-CCCccc---cccccccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCc
Q 041114 380 RRLSLMQNQIKILSEA-PTCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDL 454 (680)
Q Consensus 380 r~lsl~~~~~~~l~~~-~~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l 454 (680)
+.+..+++++..+|.. .....| ++.+..+++..|.++++|++|||++|..+..+ |..+++|++|++|+|++| .+
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l 85 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KI 85 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CC
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cC
Confidence 4566667778877762 112222 77788887666999999999999997667777 688999999999999999 78
Q ss_pred cccchhhhcCCCCCcEeeccCCcc----hhh--hcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcc
Q 041114 455 VTIPLEVISNFSKLRVLRLFGTVL----AKE--LLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSI 528 (680)
Q Consensus 455 ~~lP~~~i~~L~~L~~L~l~~~~~----~~~--l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~ 528 (680)
..++++.+++|++|++|++++|.. +.. +.+|++|+.|+++.+....+. .+.....+++|+.|+++++.-....
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeC
Confidence 888444499999999999999863 333 788999999999866544331 1112233457888888776421111
Q ss_pred cccccccC--CC------------------------------CCEEEEeccCCcc----------------eee------
Q 041114 529 DVIALARL--KH------------------------------LSTLHFSKCEELE----------------EWK------ 554 (680)
Q Consensus 529 ~~~~l~~l--~~------------------------------L~~L~l~~~~~l~----------------~l~------ 554 (680)
+ ..+..+ ++ |+.|+++++.... .+.
T Consensus 165 ~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 E-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp S-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred H-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 1 122211 22 6666666541110 000
Q ss_pred -----------------------------cccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEec
Q 041114 555 -----------------------------TDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFD 604 (680)
Q Consensus 555 -----------------------------~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~ 604 (680)
...-...++.+..+..+++|+.|+|++|..-...| .+..+++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 00000001112233556777777777765333222 366777888888877
Q ss_pred CcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc---ccCcceEEecc
Q 041114 605 CTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS---ALEHKIAIRGE 654 (680)
Q Consensus 605 c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~---~l~~L~i~~~~ 654 (680)
+. +..++. ..++.+++|+.|+++++ ++..+|..... .|+.|.+.++.
T Consensus 324 N~-l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 324 NL-LGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC-CSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CC-CCccCH-HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 53 444422 24467888888888876 46776653222 35555555554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=2.7e-14 Score=147.32 Aligned_cols=197 Identities=16% Similarity=0.109 Sum_probs=123.6
Q ss_pred ccceEEEEeecccccccccCCCCccccccccccchhhh-ccCCcceEEEccCCCCccccchhhhcc-----CCCCEEecc
Q 041114 376 WETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFF-QFMPLLKVLNMSRETNIKELLGELKAL-----VNLKCVNLE 449 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~-~~l~~Lr~LdL~~~~~i~~lP~~i~~L-----~~Lr~L~L~ 449 (680)
..++++|.+.+|.+.. .+|..+| ..+++|++|+|++| .+..+|..++.+ ++|++|+++
T Consensus 94 l~~L~~L~L~~n~l~~---------------~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG---------------TAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp TSCCCEEEEEEEBCBS---------------CCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred cCCccEEEccCCcccc---------------hhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEee
Confidence 4577788887777652 2444433 78899999999994 787778888887 899999999
Q ss_pred CCCCccccchhhhcCCCCCcEeeccCCcc------hhhh--cCCCCCceeEEEeccchhhhhhh-hchhhhccccEEEEe
Q 041114 450 WARDLVTIPLEVISNFSKLRVLRLFGTVL------AKEL--LGLKHLEELDFTLRCVHSLQILV-SSNKLQSCTRALVLI 520 (680)
Q Consensus 450 ~~~~l~~lP~~~i~~L~~L~~L~l~~~~~------~~~l--~~L~~L~~L~i~~~~~~~l~~l~-~~~~l~~~L~~L~l~ 520 (680)
+| .+..+|...++++++|++|++++|.. +..+ ..+++|+.|++..+....+..++ .....+++|+.|+++
T Consensus 158 ~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 158 QA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 98 68888854588999999999998863 2233 66777777777655444333322 111233466666666
Q ss_pred ccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEE
Q 041114 521 RFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCL 600 (680)
Q Consensus 521 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L 600 (680)
++.-....+...+..+++|+.|+++++ .++.++. . .+++|++|+++++. ++.+|.+..+++|++|
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~-~------------~~~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L 301 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK-G------------LPAKLSVLDLSYNR-LDRNPSPDELPQVGNL 301 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS-S------------CCSEEEEEECCSSC-CCSCCCTTTSCEEEEE
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCC-ccChhhh-h------------ccCCceEEECCCCC-CCCChhHhhCCCCCEE
Confidence 665322222234445566666666654 2332211 1 11566666666654 4444556666666666
Q ss_pred eEec
Q 041114 601 SLFD 604 (680)
Q Consensus 601 ~l~~ 604 (680)
++++
T Consensus 302 ~L~~ 305 (312)
T 1wwl_A 302 SLKG 305 (312)
T ss_dssp ECTT
T ss_pred eccC
Confidence 6665
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=1.1e-14 Score=159.60 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=125.7
Q ss_pred CcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEe
Q 041114 417 PLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTL 495 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~ 495 (680)
++|++|+|++| .+..+| ..++.+++|++|+|++| .+..+++ ++.+++|++|++++|. +..+...++|+.|++..
T Consensus 34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNY-VQELLVGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCS
T ss_pred CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcC
Confidence 37777777774 666654 56777777777777777 5766665 6777777777777763 34444556777777764
Q ss_pred ccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCcc
Q 041114 496 RCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLH 575 (680)
Q Consensus 496 ~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~ 575 (680)
+....+. . ..+++|+.|+++++. +...+...+..+++|+.|+++++ .+....+..+. ..+++|+
T Consensus 109 N~l~~~~---~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~---------~~l~~L~ 172 (487)
T 3oja_A 109 NNISRVS---C--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA---------ASSDTLE 172 (487)
T ss_dssp SCCCCEE---E--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGG---------GGTTTCC
T ss_pred CcCCCCC---c--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHh---------hhCCccc
Confidence 4333221 1 113467777777766 33333236677777788877764 44444333331 2567777
Q ss_pred EEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCcc
Q 041114 576 KVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNS 643 (680)
Q Consensus 576 ~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~ 643 (680)
.|+|++|. ++.+|....+++|++|+++++ .+..++.. ++.+++|+.|++++|. |..+|..+..
T Consensus 173 ~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l~~ 235 (487)
T 3oja_A 173 HLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK-LVLIEKALRF 235 (487)
T ss_dssp EEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-CCEECTTCCC
T ss_pred EEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-Ccccchhhcc
Confidence 77777765 455555566777777777774 35555443 3567777777777753 6666665433
No 67
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.8e-14 Score=148.70 Aligned_cols=214 Identities=15% Similarity=0.110 Sum_probs=128.6
Q ss_pred CcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC-Cc----chhhhcCCCCCce
Q 041114 417 PLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG-TV----LAKELLGLKHLEE 490 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~-~~----~~~~l~~L~~L~~ 490 (680)
++++.|+|++ +.|+.+|. .+.+|++|++|+|++|..++.+|.+++.+|++|+++...+ +. .+..+..|++|+.
T Consensus 30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 4567777777 47777774 3677777777777777323556665566777666544333 22 1234566777777
Q ss_pred eEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCC-CCCEEEEeccCCcceeecccCCCCccCCCCCC
Q 041114 491 LDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLK-HLSTLHFSKCEELEEWKTDYTSGTVLKSPQPF 569 (680)
Q Consensus 491 L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 569 (680)
|++..+....+...... ...++..|++.++..+..++...+..+. .|+.|++++ +.++.++....
T Consensus 109 L~l~~n~l~~~~~~~~~--~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f----------- 174 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF----------- 174 (350)
T ss_dssp EEEEEECCSSCCCCTTC--CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS-----------
T ss_pred ccccccccccCCchhhc--ccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhc-----------
Confidence 77765443332211111 1224566777666556665544455543 577788875 45565544332
Q ss_pred CCCCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCccccCc
Q 041114 570 VFCSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALEH 647 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~ 647 (680)
...+|++|.+.++..++.+|. +..+++|++|++++ +.++.+|. +.+.+|+.|.+.+|.+|+.+|. ... +.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~-l~~-l~~ 247 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPS----YGLENLKKLRARSTYNLKKLPT-LEK-LVA 247 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS----SSCTTCCEEECTTCTTCCCCCC-TTT-CCS
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccCh----hhhccchHhhhccCCCcCcCCC-chh-CcC
Confidence 345788888887777777774 57788888888887 45776654 3366666676777777888874 222 455
Q ss_pred ceEEe
Q 041114 648 KIAIR 652 (680)
Q Consensus 648 L~i~~ 652 (680)
|....
T Consensus 248 L~~l~ 252 (350)
T 4ay9_X 248 LMEAS 252 (350)
T ss_dssp CCEEE
T ss_pred hhhCc
Confidence 55544
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.53 E-value=9.2e-14 Score=159.37 Aligned_cols=213 Identities=12% Similarity=0.084 Sum_probs=135.3
Q ss_pred cceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCcee
Q 041114 418 LLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEEL 491 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L 491 (680)
.|++|++++| .+..+ |..++.+++|++|++++| .+. .+|...++.+++|++|++++|. ....+..+++|+.|
T Consensus 382 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 382 PLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp CCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCceEECCCC-CCCeEChhhhhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 4555555553 44433 355666677777777766 443 3553336667777777776664 22345556666666
Q ss_pred EEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF 571 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l 571 (680)
++..+....+..++.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...... ..+..+..+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--~~~~~~~~l 535 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPG--GPIYFLKGL 535 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTT--SCCCTTTTC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccC--CcchhhcCC
Confidence 66544433333344444455688888888876 44555446788888888888875 344332221110 011123678
Q ss_pred CCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCC
Q 041114 572 CSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLD 640 (680)
Q Consensus 572 ~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~ 640 (680)
++|+.|+|+++. +..+|. +..+++|+.|++++ +.++.++.. .++.+++|+.|+++++ +|+.+|..
T Consensus 536 ~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 536 SHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGL-NNLNTLPAS-VFNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred CCCCEEECCCCC-CCCCCHHHcccccCcceeECCC-CCCCcCCHh-HhCCCCCCCEEECCCC-cCCccChh
Confidence 999999999975 556663 78899999999987 567777543 4577899999999997 58887754
No 69
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=3.5e-14 Score=121.64 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=74.6
Q ss_pred ecchhhhhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHH
Q 041114 8 TCDDAFFNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQ--QLRRLDQVQVWLSRVEAVKTETD 85 (680)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~--~~~~~~~v~~Wl~~v~~~~~d~e 85 (680)
+++.+ ++||.+.+.+|+.++.+++++++.|+++|++|+++ +.||+++ +.. ++.|+.|+++|++++||+|
T Consensus 2 ~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~-------L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 2 AISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAA-------LIKIGEVPREQL-DSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp TTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-------HHHHHHhccccC-CHHHHHHHHHHHHHHHHHH
Confidence 45666 99999999999999999999999999999999999 9999988 444 8999999999999999999
Q ss_pred HHHHHhHHHhcc
Q 041114 86 ELIRRSSKEIDK 97 (680)
Q Consensus 86 d~ld~~~~~~~~ 97 (680)
|++|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999998863
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=5.4e-14 Score=143.32 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=38.3
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
+.+..+|.++ .++|++|+|++| .+..++ ..+..+++|++|+|++| .++.+|. .+.+++|++|+++++.
T Consensus 20 ~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 20 RNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp SCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSC
T ss_pred CCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCc
Confidence 3444555542 245666666663 555443 45666666666666666 5666655 3566666666666553
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=1.6e-13 Score=138.71 Aligned_cols=213 Identities=21% Similarity=0.188 Sum_probs=136.5
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch-hh
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-EL 437 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i 437 (680)
.+...+..+..+|... ..++++|.+.+|.+. .++...|.++++|++|+|++| .+..+|. .+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~----------------~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 72 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLR----------------HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY 72 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCC----------------EECTTTTTTCTTCSEEECTTC-CCCEECTTTT
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCccc----------------ccCHhHhccccCCcEEECCCC-cCCccCHHHc
Confidence 3444455555565422 256888888877765 344444788899999999984 7877774 68
Q ss_pred hccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhcc
Q 041114 438 KALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSC 513 (680)
Q Consensus 438 ~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~ 513 (680)
+.+++|++|++++| .+..+|.+.++++++|++|+++++.. ...+..+++|+.|++..+....+. ++.....+++
T Consensus 73 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~ 150 (276)
T 2z62_A 73 QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTN 150 (276)
T ss_dssp TTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTT
T ss_pred cCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-CchhhccCCC
Confidence 88999999999998 68888755588899999999988752 113667777777777644333211 2222333457
Q ss_pred ccEEEEeccCCCCcccccccccCCCCC----EEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC
Q 041114 514 TRALVLIRFKDSKSIDVIALARLKHLS----TLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 514 L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~ 589 (680)
|+.|+++++. +...+...+..+++|+ .|+++++ .+..++.... ...+|+.|++++|. ++.+|
T Consensus 151 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~-----------~~~~L~~L~L~~n~-l~~~~ 216 (276)
T 2z62_A 151 LEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF-----------KEIRLKELALDTNQ-LKSVP 216 (276)
T ss_dssp CCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSS-----------CSCCEEEEECCSSC-CSCCC
T ss_pred CCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCcccc-----------CCCcccEEECCCCc-eeecC
Confidence 7777777765 3433333455555555 6777653 4444433322 23468888888765 44544
Q ss_pred C--cCCCCCCCEEeEecC
Q 041114 590 F--LVFAPNLKCLSLFDC 605 (680)
Q Consensus 590 ~--l~~l~~L~~L~l~~c 605 (680)
. +..+++|++|+++++
T Consensus 217 ~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTTTTTCCSCCEEECCSS
T ss_pred HhHhcccccccEEEccCC
Confidence 3 467778888887754
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=4.5e-14 Score=148.15 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=117.0
Q ss_pred cEEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch-h
Q 041114 358 NFLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-E 436 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~ 436 (680)
..+...+.++.++|... ..++++|.+++|.+.. +|++.|.++++|++|+|++|.-.+.+|. .
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~----------------i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRV----------------IQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSE----------------ECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCC----------------cCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 34555666677777532 3578888888887764 4555566777777777777422344553 3
Q ss_pred hhccCCCCEE-eccCCCCccccchhhhcCCCCCcEeeccCCcc--hhhh--cCCCCCceeEEEeccchhhhhhhh--chh
Q 041114 437 LKALVNLKCV-NLEWARDLVTIPLEVISNFSKLRVLRLFGTVL--AKEL--LGLKHLEELDFTLRCVHSLQILVS--SNK 509 (680)
Q Consensus 437 i~~L~~Lr~L-~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~--~~~l--~~L~~L~~L~i~~~~~~~l~~l~~--~~~ 509 (680)
+.+|++|+.+ .+.++ ++..+|++.+..|++|++|+++++.. +... ....++..+.+. +...+..++. +..
T Consensus 75 f~~L~~l~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~--~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ--DNINIHTIERNSFVG 151 (350)
T ss_dssp BCSCTTCCEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE--SCTTCCEECTTSSTT
T ss_pred hhcchhhhhhhcccCC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc--cccccccccccchhh
Confidence 5666666543 33344 67777655566777777777766531 1111 112223333332 2222222221 112
Q ss_pred hhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC
Q 041114 510 LQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT 589 (680)
Q Consensus 510 l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~ 589 (680)
....++.|+++++. +..++. ......+|+.|.+.+++.++.++.+.+ ..+++|+.|+|+++. ++.+|
T Consensus 152 ~~~~l~~L~L~~N~-i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f----------~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 152 LSFESVILWLNKNG-IQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVF----------HGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp SBSSCEEEECCSSC-CCEECT-TSSTTEEEEEEECTTCTTCCCCCTTTT----------TTEECCSEEECTTSC-CCCCC
T ss_pred cchhhhhhcccccc-ccCCCh-hhccccchhHHhhccCCcccCCCHHHh----------ccCcccchhhcCCCC-cCccC
Confidence 22345555555543 333332 222334555555555555555443333 344555555555542 44444
Q ss_pred CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccC
Q 041114 590 FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNT 627 (680)
Q Consensus 590 ~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~ 627 (680)
. ..+.+|+.|.+.++..++.+|. ...+++|+.++
T Consensus 219 ~-~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~ 252 (350)
T 4ay9_X 219 S-YGLENLKKLRARSTYNLKKLPT---LEKLVALMEAS 252 (350)
T ss_dssp S-SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEE
T ss_pred h-hhhccchHhhhccCCCcCcCCC---chhCcChhhCc
Confidence 2 3345555555555555555542 13344444443
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=7.3e-15 Score=151.57 Aligned_cols=198 Identities=16% Similarity=0.076 Sum_probs=117.7
Q ss_pred cCCcceEEEccCCCCcc-ccchhh--hccCCCCEEeccCCCCccccchhhhcCC-----CCCcEeeccCCc----chhhh
Q 041114 415 FMPLLKVLNMSRETNIK-ELLGEL--KALVNLKCVNLEWARDLVTIPLEVISNF-----SKLRVLRLFGTV----LAKEL 482 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~-~lP~~i--~~L~~Lr~L~L~~~~~l~~lP~~~i~~L-----~~L~~L~l~~~~----~~~~l 482 (680)
.+++|++|+|++| .+. .+|..+ +.+++|++|++++| .+..+|.. ++.+ ++|++|++++|. .+..+
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 5788888888884 565 677765 78888888888888 67777764 6666 788888888765 22456
Q ss_pred cCCCCCceeEEEeccchhhhhhhhch--hhhccccEEEEeccCCCCcc---cccccccCCCCCEEEEeccCCcceeeccc
Q 041114 483 LGLKHLEELDFTLRCVHSLQILVSSN--KLQSCTRALVLIRFKDSKSI---DVIALARLKHLSTLHFSKCEELEEWKTDY 557 (680)
Q Consensus 483 ~~L~~L~~L~i~~~~~~~l~~l~~~~--~l~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 557 (680)
..+++|+.|+++.+.......++... ..+++|+.|+++++. +... +...+..+++|+.|+++++. +....+.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~- 246 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA- 246 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC-
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch-
Confidence 67777777777754432211111111 334577777777765 3321 11133456777777777643 3322110
Q ss_pred CCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 558 TSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 558 ~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
+....+++|++|++++|. ++.+|.-.. ++|++|+++++ .++.++. ++.+++|+.|++++.+
T Consensus 247 --------~~~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 247 --------PSCDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------SCCCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTCT
T ss_pred --------hhhhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCC-CCCCChh---HhhCCCCCEEeccCCC
Confidence 111345677777777765 344443111 67777777763 4555532 3566777777666643
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.7e-13 Score=138.08 Aligned_cols=163 Identities=19% Similarity=0.177 Sum_probs=100.7
Q ss_pred ccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGL 485 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L 485 (680)
.+|+..|.++++|++|+|++ +.+..+|.. +..+++|++|++++| .+..+|.+.+..+++|++|+++++.
T Consensus 51 ~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-------- 120 (270)
T 2o6q_A 51 SLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQ-------- 120 (270)
T ss_dssp CCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSC--------
T ss_pred eeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCc--------
Confidence 34443455666666666666 355566544 355666666666666 4666665445566666666666543
Q ss_pred CCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCC
Q 041114 486 KHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKS 565 (680)
Q Consensus 486 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 565 (680)
...+. +.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...+
T Consensus 121 ------------l~~~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~------- 177 (270)
T 2o6q_A 121 ------------LKSLP--PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAF------- 177 (270)
T ss_dssp ------------CCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT-------
T ss_pred ------------cCeeC--HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC-cCcEeChhHh-------
Confidence 11111 0111223477777877765 45555445788899999999875 4454443333
Q ss_pred CCCCCCCCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCc
Q 041114 566 PQPFVFCSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCT 606 (680)
Q Consensus 566 ~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~ 606 (680)
..+++|++|+|++|. ++.+|. +..+++|+.|++++++
T Consensus 178 ---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 178 ---DKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---ccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 567899999999975 555553 6788999999998754
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=6.6e-14 Score=141.32 Aligned_cols=200 Identities=18% Similarity=0.184 Sum_probs=133.6
Q ss_pred ccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCC
Q 041114 374 KEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 374 ~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~ 453 (680)
....+++.+.+.++.+..+ +. +..+++|++|++++| .+..+| .++.+++|++|++++| .
T Consensus 38 ~~l~~L~~L~l~~~~i~~~----------------~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n-~ 96 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV----------------QG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGN-Q 96 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC----------------TT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTS-C
T ss_pred ccccceeeeeeCCCCcccc----------------cc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCC-c
Confidence 3446788888887766533 22 677888999999984 777765 7888999999999998 7
Q ss_pred ccccchhhhcCCCCCcEeeccCCcch----hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccc
Q 041114 454 LVTIPLEVISNFSKLRVLRLFGTVLA----KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID 529 (680)
Q Consensus 454 l~~lP~~~i~~L~~L~~L~l~~~~~~----~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~ 529 (680)
++.+|...++++++|++|++++|..- ..+..+ ++|+.|+++++. +...+
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------~~L~~L~L~~n~-l~~~~ 149 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL--------------------------TNLTYLNLAHNQ-LQSLP 149 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------TTCCEEECCSSC-CCCCC
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC--------------------------CCCCEEECCCCc-cCccC
Confidence 88888765688899999999887411 012222 356666666664 44444
Q ss_pred ccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcc
Q 041114 530 VIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTA 607 (680)
Q Consensus 530 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~ 607 (680)
...+..+++|+.|+++++ .+..++...+ ..+++|+.|++++|. +..++. +..+++|++|++++++.
T Consensus 150 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~----------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYN-QLQSLPEGVF----------DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTT----------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCccCCEEECCCC-CcCccCHHHh----------cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCc
Confidence 335677888888888875 3444433322 567888888888876 444443 57788888888887642
Q ss_pred hhHhhhcCCCCCCCcccccCccccccCCCCCCCCc
Q 041114 608 MEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSN 642 (680)
Q Consensus 608 l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~ 642 (680)
.+.+|+|++|.+..+.---.+|....
T Consensus 218 ---------~~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 218 ---------DCTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp ---------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ---------cccCcHHHHHHHHHHhCCCcccCccc
Confidence 14567777777665543345555443
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.51 E-value=5.3e-14 Score=154.21 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=42.5
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT 456 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~ 456 (680)
+++++|.+.+|.+..+ ++..|..+++|++|+|++| .+...|. ++.+++|++|+|++| .++.
T Consensus 34 ~~L~~L~Ls~n~l~~~----------------~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~ 94 (487)
T 3oja_A 34 WNVKELDLSGNPLSQI----------------SAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNN-YVQE 94 (487)
T ss_dssp GGCCEEECCSSCCCCC----------------CGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSS-EEEE
T ss_pred CCccEEEeeCCcCCCC----------------CHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCC-cCCC
Confidence 4788898888887654 3333555555555555553 4443333 555555555555555 4554
Q ss_pred cchhhhcCCCCCcEeeccCCc
Q 041114 457 IPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 457 lP~~~i~~L~~L~~L~l~~~~ 477 (680)
+|.. ++|++|++++|.
T Consensus 95 l~~~-----~~L~~L~L~~N~ 110 (487)
T 3oja_A 95 LLVG-----PSIETLHAANNN 110 (487)
T ss_dssp EEEC-----TTCCEEECCSSC
T ss_pred CCCC-----CCcCEEECcCCc
Confidence 4431 445555555443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=6.8e-14 Score=141.55 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=146.9
Q ss_pred ccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----ch
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LA 479 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~ 479 (680)
+..+|..+ .++|++|++++ +.+..+|. .++++++|++|++++| .+..+|...++++++|++|++++|. .+
T Consensus 19 l~~ip~~l---~~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 19 FYKIPDNL---PFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CSSCCSSS---CTTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ccccCCCC---CCCccEEECCC-CcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 44566652 25799999999 58988885 7999999999999999 7999987668999999999999986 23
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCc--ccccccccCCCCCEEEEeccCCcceeeccc
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKS--IDVIALARLKHLSTLHFSKCEELEEWKTDY 557 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 557 (680)
..+.++++|+.|++..+....+... ....+++|+.|+++++. +.. ++ ..+..+++|+.|+++++ .+..++...
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~l~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 168 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNL-IQSFKLP-EYFSNLTNLEHLDLSSN-KIQSIYCTD 168 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTC--CCTTCTTCCEEECCSSC-CCCCCCC-GGGGGCTTCCEEECCSS-CCCEECGGG
T ss_pred hhhcCCccccEEECCCCCccccCch--hcccCCCCCEEECcCCc-cceecCc-hhhccCCCCCEEECCCC-CCCcCCHHH
Confidence 5678889999998875544333221 12334589999998876 333 33 37888899999999875 455554433
Q ss_pred CCCCccCCCCCCCCCCcc----EEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 558 TSGTVLKSPQPFVFCSLH----KVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 558 ~~~~~l~~~~~~~l~~L~----~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
+ ..+++|+ +|+++++..-...+......+|++|+++++. +..++. ..++.+++|+.|++++.|
T Consensus 169 ~----------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 169 L----------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp G----------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred h----------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCH-hHhcccccccEEEccCCc
Confidence 3 3344555 7888887643333444555689999999854 666644 344678888888877543
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=2.1e-13 Score=137.51 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=132.9
Q ss_pred CcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEe
Q 041114 417 PLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTL 495 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~ 495 (680)
++|+.|+|++ +.+..+|. .++.+++|++|++++| .+..+|.+.+..+++|++|+++++..- .+ .
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~-------~~---~--- 101 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQ-------AL---P--- 101 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCC-------CC---C---
T ss_pred CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCC-------cC---C---
Confidence 5789999999 48888884 6899999999999999 799999875688999999999887411 00 0
Q ss_pred ccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCcc
Q 041114 496 RCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLH 575 (680)
Q Consensus 496 ~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~ 575 (680)
+.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...+ ..+++|+
T Consensus 102 ---------~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~----------~~l~~L~ 160 (270)
T 2o6q_A 102 ---------IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVF----------DKLTSLK 160 (270)
T ss_dssp ---------TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT----------TTCTTCC
T ss_pred ---------HhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHc----------cCCcccc
Confidence 0011223478888888776 44455446889999999999975 4555544333 5789999
Q ss_pred EEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 576 KVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 576 ~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
.|++++|. ++.++. +..+++|++|+++++ .+..++. ..++.+++|+.|+++++|
T Consensus 161 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred eeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 99999976 555553 778999999999996 5666654 345779999999988766
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=6.5e-14 Score=144.80 Aligned_cols=233 Identities=14% Similarity=0.118 Sum_probs=125.2
Q ss_pred cceEEEEeecccccccccC--CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEec
Q 041114 377 ETVRRLSLMQNQIKILSEA--PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNL 448 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~--~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L 448 (680)
+++++|.+.+|.+..++.. ..+++| ++.+..+++ |..+++|++|++++| .+..+| .+++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence 4778888888777654321 222222 333333333 455555666666553 454444 2355556666
Q ss_pred cCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCC
Q 041114 449 EWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKD 524 (680)
Q Consensus 449 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~ 524 (680)
++| .+..+|.. .+++|++|++++|.. ...+..+++|+.|+++.+....+. .......+++|+.|+++++.
T Consensus 107 ~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~- 180 (317)
T 3o53_A 107 ANN-NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNF- 180 (317)
T ss_dssp CSS-CCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSC-
T ss_pred CCC-ccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCc-
Confidence 655 45555542 355666666666541 223445566666666543322211 01111223466777776665
Q ss_pred CCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEe
Q 041114 525 SKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLF 603 (680)
Q Consensus 525 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~ 603 (680)
+...+ ....+++|+.|+++++ .+..++.. + ..+++|+.|++++|. ++.+| .+..+++|+.|+++
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N-~l~~l~~~-~----------~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 181 IYDVK--GQVVFAKLKTLDLSSN-KLAFMGPE-F----------QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CCEEE--CCCCCTTCCEEECCSS-CCCEECGG-G----------GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECT
T ss_pred Ccccc--cccccccCCEEECCCC-cCCcchhh-h----------cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEcc
Confidence 33333 3334667777777654 34444332 1 456777777777765 33443 46677778888877
Q ss_pred cCcch-hHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 604 DCTAM-EEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 604 ~c~~l-~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
+++.. ..++. .++.+++|+.+++.+|+.++..+.
T Consensus 246 ~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 246 GNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCccCcCHHH--HHhccccceEEECCCchhccCCch
Confidence 75543 22222 235677777777777776665543
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.2e-14 Score=151.53 Aligned_cols=188 Identities=20% Similarity=0.157 Sum_probs=104.9
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccc--cchhhhccCCCCEEeccCCCCcc-ccchhhhcCCCCCcEeeccCCcc
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKE--LLGELKALVNLKCVNLEWARDLV-TIPLEVISNFSKLRVLRLFGTVL 478 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~--lP~~i~~L~~Lr~L~L~~~~~l~-~lP~~~i~~L~~L~~L~l~~~~~ 478 (680)
++.+...++. +..+++|++|+|++| .+.. +|..+..+++|++|++++| .+. ..|.. ++++++|++|++++|..
T Consensus 79 ~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 79 RSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSG 154 (336)
T ss_dssp TCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBS
T ss_pred Cccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCC
Confidence 3344444444 345777777777774 4542 6666777777777777777 454 34554 67777777777777631
Q ss_pred h------hhhcCCCCCceeEEEec-cchhhhhhhhchhhhc-cccEEEEeccC-CCC--cccccccccCCCCCEEEEecc
Q 041114 479 A------KELLGLKHLEELDFTLR-CVHSLQILVSSNKLQS-CTRALVLIRFK-DSK--SIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 479 ~------~~l~~L~~L~~L~i~~~-~~~~l~~l~~~~~l~~-~L~~L~l~~~~-~~~--~~~~~~l~~l~~L~~L~l~~~ 547 (680)
+ ..+.++++|+.|++..+ .... ..++.....++ +|+.|++++|. .+. .++ ..+..+++|+.|++++|
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTE-KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCH-HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTC
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcCh-HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCC
Confidence 1 22455667777766644 2221 11233333344 67777776663 222 122 14456667777777666
Q ss_pred CCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCC--CCCcCCCCCCCEEeEecC
Q 041114 548 EELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKG--LTFLVFAPNLKCLSLFDC 605 (680)
Q Consensus 548 ~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~l~~c 605 (680)
..+....+..+ ..+++|++|++++|..+.. +..++.+++|++|++++|
T Consensus 233 ~~l~~~~~~~l----------~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKNDCFQEF----------FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGGGGGG----------GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCHHHHHHH----------hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 54432222222 4556777777777653221 113556677777777766
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.49 E-value=2.5e-13 Score=152.34 Aligned_cols=226 Identities=20% Similarity=0.161 Sum_probs=166.1
Q ss_pred cceEEEEeecccccccccCCCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccC
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEW 450 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~ 450 (680)
.+++.+.+.++.+..+|.... ++| ++.+..+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 468899999999998876432 333 677888886 4788999999994 7888886 788999999999
Q ss_pred CCCccccchhhhcCCCCCcEeeccCCcchhhhc-CCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccc
Q 041114 451 ARDLVTIPLEVISNFSKLRVLRLFGTVLAKELL-GLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID 529 (680)
Q Consensus 451 ~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~ 529 (680)
| .++.+|. .+.+|++|++++|..- .++ .+++|+.|+++.+....+ +. ...+|+.|.++++. +..++
T Consensus 111 N-~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l---~~---~~~~L~~L~L~~N~-l~~l~ 177 (622)
T 3g06_A 111 N-PLTHLPA----LPSGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASL---PA---LPSELCKLWAYNNQ-LTSLP 177 (622)
T ss_dssp C-CCCCCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSC-CSCCC
T ss_pred C-cCCCCCC----CCCCcCEEECCCCCCC-cCCCCCCCCCEEECcCCcCCCc---CC---ccCCCCEEECCCCC-CCCCc
Confidence 8 7888886 5678899999887522 222 357888888875544333 22 34578899988875 44444
Q ss_pred ccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchh
Q 041114 530 VIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAME 609 (680)
Q Consensus 530 ~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~ 609 (680)
..+++|+.|+++++ .+..++ ..+++|+.|++++|. ++.+|. .+++|+.|+++++ .++
T Consensus 178 ----~~~~~L~~L~Ls~N-~l~~l~--------------~~~~~L~~L~L~~N~-l~~l~~--~~~~L~~L~Ls~N-~L~ 234 (622)
T 3g06_A 178 ----MLPSGLQELSVSDN-QLASLP--------------TLPSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGN-RLT 234 (622)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCC--------------CCCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSS-CCS
T ss_pred ----ccCCCCcEEECCCC-CCCCCC--------------CccchhhEEECcCCc-ccccCC--CCCCCCEEEccCC-ccC
Confidence 45689999999875 344331 235789999999975 566663 4699999999985 566
Q ss_pred HhhhcCCCCCCCcccccCccccccCCCCCCCCccccCcceEEecc
Q 041114 610 EIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALEHKIAIRGE 654 (680)
Q Consensus 610 ~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~~~ 654 (680)
.++ ..+++|+.|++++| +|+.+|..+.+ |+.|.+.+|.
T Consensus 235 ~lp-----~~l~~L~~L~Ls~N-~L~~lp~~~~~-L~~L~Ls~N~ 272 (622)
T 3g06_A 235 SLP-----VLPSELKELMVSGN-RLTSLPMLPSG-LLSLSVYRNQ 272 (622)
T ss_dssp CCC-----CCCTTCCEEECCSS-CCSCCCCCCTT-CCEEECCSSC
T ss_pred cCC-----CCCCcCcEEECCCC-CCCcCCccccc-CcEEeCCCCC
Confidence 654 45799999999997 69999984433 7777766664
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.47 E-value=6.5e-13 Score=144.14 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=101.1
Q ss_pred CCCcccccccccccceEEEEeecccccccccCC-CCccc---cccccccchhhhccCCcceEEEccCCCCccccchhhhc
Q 041114 364 GRGLKEAPEVKEWETVRRLSLMQNQIKILSEAP-TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKA 439 (680)
Q Consensus 364 ~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~-~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~ 439 (680)
+..+..+|......+++++.+.+|.+..+|... ....| ++.+..+|. |..+++|++|++++| .+..+|...
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N-~l~~l~~~~-- 214 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNN-SLKKLPDLP-- 214 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS-CCSSCCCCC--
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCcc--ccCCCCCCEEECCCC-cCCcCCCCc--
Confidence 333333443344445555555555555443321 11111 444444442 455555555555553 444444322
Q ss_pred cCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhc-CCCCCceeEEEeccchhhhhhhhchhhhccccEEE
Q 041114 440 LVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELL-GLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALV 518 (680)
Q Consensus 440 L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~ 518 (680)
.+|++|++++| .+..+|. ++.+++|++|++++|..- .++ .+++|+.|++..+.... ++. ..++|+.|+
T Consensus 215 -~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~---l~~---~~~~L~~L~ 283 (454)
T 1jl5_A 215 -LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD---LPE---LPQSLTFLD 283 (454)
T ss_dssp -TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSC---CCC---CCTTCCEEE
T ss_pred -CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccc---cCc---ccCcCCEEE
Confidence 35555555555 4555553 556666666666554311 111 12455555554332222 111 123555555
Q ss_pred EeccCCCCcccccccccCCCCCEEEEeccCCcceee----------cccCCCCccCCCCCCCCCCccEEeeeCCCCCCCC
Q 041114 519 LIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWK----------TDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGL 588 (680)
Q Consensus 519 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~----------~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l 588 (680)
++++. +..++ .+ .++|+.|+++++ .+..++ ...-...+ .| ..+++|+.|++++|. ++.+
T Consensus 284 ls~N~-l~~l~--~~--~~~L~~L~l~~N-~l~~i~~~~~~L~~L~Ls~N~l~~--lp--~~~~~L~~L~L~~N~-l~~l 352 (454)
T 1jl5_A 284 VSENI-FSGLS--EL--PPNLYYLNASSN-EIRSLCDLPPSLEELNVSNNKLIE--LP--ALPPRLERLIASFNH-LAEV 352 (454)
T ss_dssp CCSSC-CSEES--CC--CTTCCEEECCSS-CCSEECCCCTTCCEEECCSSCCSC--CC--CCCTTCCEEECCSSC-CSCC
T ss_pred CcCCc-cCccc--Cc--CCcCCEEECcCC-cCCcccCCcCcCCEEECCCCcccc--cc--ccCCcCCEEECCCCc-cccc
Confidence 55543 22211 00 134555555432 111111 00000000 11 124677788887764 5566
Q ss_pred CCcCCCCCCCEEeEecCcchhH---hhhcCCCCCC-------------CcccccCccccccCCCCCCCCccccCcceEEe
Q 041114 589 TFLVFAPNLKCLSLFDCTAMEE---IISAGKFVHT-------------PEMMGNTMDPCAKLRKLPLDSNSALEHKIAIR 652 (680)
Q Consensus 589 ~~l~~l~~L~~L~l~~c~~l~~---i~~~~~~~~l-------------p~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~~ 652 (680)
|. .+++|++|+++++. +.. +|. .++.+ ++|+.|++++++ ++.+|..+.. +..|.+..
T Consensus 353 p~--~l~~L~~L~L~~N~-l~~l~~ip~--~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~iP~s-l~~L~~~~ 425 (454)
T 1jl5_A 353 PE--LPQNLKQLHVEYNP-LREFPDIPE--SVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDIPES-VEDLRMNS 425 (454)
T ss_dssp CC--CCTTCCEEECCSSC-CSSCCCCCT--TCCEEECCC-----------------------------------------
T ss_pred cc--hhhhccEEECCCCC-CCcCCCChH--HHHhhhhcccccccccccCcCCEEECCCCc-CCccccchhh-HhheeCcC
Confidence 65 56788888887754 333 322 12334 677888887754 5544333322 55555544
Q ss_pred c
Q 041114 653 G 653 (680)
Q Consensus 653 ~ 653 (680)
|
T Consensus 426 ~ 426 (454)
T 1jl5_A 426 E 426 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=4.9e-13 Score=136.18 Aligned_cols=186 Identities=17% Similarity=0.117 Sum_probs=127.5
Q ss_pred cceEEEEeecccccccccCC--CCccc---cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCC
Q 041114 377 ETVRRLSLMQNQIKILSEAP--TCPHL---HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWA 451 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~--~~~~L---~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~ 451 (680)
.+++.+.+.++.+..+|... ....| ++.+..+++..|..+++|++|+|++ +.+..+|.. +.+++|++|++++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSS
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCC
Confidence 45556666666665554331 11122 4555567666699999999999999 589888865 89999999999999
Q ss_pred CCccccchhhhcCCCCCcEeeccCCcch----hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCc
Q 041114 452 RDLVTIPLEVISNFSKLRVLRLFGTVLA----KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKS 527 (680)
Q Consensus 452 ~~l~~lP~~~i~~L~~L~~L~l~~~~~~----~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~ 527 (680)
.++.+|.. +..+++|++|++++|..- ..+..+ ++|+.|+++++. +..
T Consensus 88 -~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l--------------------------~~L~~L~L~~N~-l~~ 138 (290)
T 1p9a_G 88 -QLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGL--------------------------GELQELYLKGNE-LKT 138 (290)
T ss_dssp -CCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTC--------------------------TTCCEEECTTSC-CCC
T ss_pred -cCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCC--------------------------CCCCEEECCCCC-CCc
Confidence 79999996 899999999999987411 122223 356666666654 444
Q ss_pred ccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC-CcCCCCCCCEEeEecC
Q 041114 528 IDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT-FLVFAPNLKCLSLFDC 605 (680)
Q Consensus 528 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~l~~c 605 (680)
++...+..+++|+.|+++++ .++.++...+ ..+++|+.|+|+++. ++.+| .+..+++|+.|++++.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~----------~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANN-NLTELPAGLL----------NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTS-CCSCCCTTTT----------TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred cChhhcccccCCCEEECCCC-cCCccCHHHh----------cCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence 44445677788888888764 4554443333 457788888888765 44444 4566778888888754
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=2.7e-13 Score=136.85 Aligned_cols=180 Identities=17% Similarity=0.192 Sum_probs=133.8
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeE
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELD 492 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~ 492 (680)
+..+++|+.|++++ +.+..++ +++.+++|++|++++| .+..+|. ++.+++|++|++++|..- .+.
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n~l~-~~~--------- 101 (272)
T 3rfs_A 37 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGN-KLHDISA--LKELTNLTYLILTGNQLQ-SLP--------- 101 (272)
T ss_dssp HHHHTTCCEEECTT-SCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECTTSCCC-CCC---------
T ss_pred cccccceeeeeeCC-CCccccc-ccccCCCCcEEECCCC-CCCCchh--hcCCCCCCEEECCCCccC-ccC---------
Confidence 56788999999999 4788776 6889999999999999 7888874 899999999999987411 000
Q ss_pred EEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCC
Q 041114 493 FTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFC 572 (680)
Q Consensus 493 i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~ 572 (680)
+.....+++|+.|+++++. +...+...+..+++|+.|+++++ .+..++...+ ..++
T Consensus 102 ------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~----------~~l~ 157 (272)
T 3rfs_A 102 ------------NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVF----------DKLT 157 (272)
T ss_dssp ------------TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT----------TTCT
T ss_pred ------------hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHHHh----------ccCc
Confidence 0001122367777777765 44454446789999999999986 5555544333 5789
Q ss_pred CccEEeeeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccC
Q 041114 573 SLHKVTITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKL 634 (680)
Q Consensus 573 ~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L 634 (680)
+|+.|++++|. ++.++. ++.+++|++|+++++. +..++. ..++.+++|+.|++++++-.
T Consensus 158 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 158 NLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred cCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCH-HHHhCCcCCCEEEccCCCcc
Confidence 99999999986 555554 6889999999999964 666644 34578999999999887643
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=4.1e-13 Score=136.86 Aligned_cols=168 Identities=21% Similarity=0.206 Sum_probs=111.7
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCce
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEE 490 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~ 490 (680)
+..+++|++|++++ +.+..+| .++.+++|++|++++| .+..+|. ++++++|++|++++|. .+..+..+++|+.
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCE
T ss_pred hhhcCcccEEEccC-CCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCE
Confidence 34566677777777 3666665 4667777777777777 5666665 6677777777777664 3444566666666
Q ss_pred eEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCC
Q 041114 491 LDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFV 570 (680)
Q Consensus 491 L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~ 570 (680)
|++..+....+..+. .+++|+.|+++++. +... ..+..+++|+.|+++++ .+..+++ + ..
T Consensus 117 L~L~~n~i~~~~~l~----~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l----------~~ 176 (291)
T 1h6t_A 117 LSLEHNGISDINGLV----HLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--L----------AG 176 (291)
T ss_dssp EECTTSCCCCCGGGG----GCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCCGG--G----------TT
T ss_pred EECCCCcCCCChhhc----CCCCCCEEEccCCc-CCcc--hhhccCCCCCEEEccCC-ccccchh--h----------cC
Confidence 666544433332222 23478888888775 4444 36788888999999875 4444322 2 56
Q ss_pred CCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCc
Q 041114 571 FCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 571 l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~ 606 (680)
+++|+.|++++|. ++.++.+..+++|+.|++++++
T Consensus 177 l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 LTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 7889999998875 6677778888999999998854
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.1e-13 Score=144.30 Aligned_cols=205 Identities=17% Similarity=0.073 Sum_probs=132.2
Q ss_pred hccC--CcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc--cchhhhcCCCCCcEeeccCCc----chhhhcC
Q 041114 413 FQFM--PLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT--IPLEVISNFSKLRVLRLFGTV----LAKELLG 484 (680)
Q Consensus 413 ~~~l--~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~--lP~~~i~~L~~L~~L~l~~~~----~~~~l~~ 484 (680)
+..+ +++++|++++ +.+...+..+..+++|++|++++| .+.. +|.. ++++++|++|++++|. .+..+..
T Consensus 64 ~~~~~~~~l~~L~l~~-n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPR-SFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHTTCSEEECTT-CEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHhhhhccceEEEcCC-ccccccchhhccCCCCCEEEccCC-CcCHHHHHHH-HhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 4555 7788888888 467666666777888888888888 4653 6664 7888888888888875 3445677
Q ss_pred CCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccc-ccccccCC-CCCEEEEeccC-Cccee-ecccCCC
Q 041114 485 LKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID-VIALARLK-HLSTLHFSKCE-ELEEW-KTDYTSG 560 (680)
Q Consensus 485 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~~l~~l~-~L~~L~l~~~~-~l~~l-~~~~~~~ 560 (680)
+++|+.|++..+..-.-..++.....+++|+.|++++|..+.... ...+..++ +|++|++++|. .+..- .+...
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-- 218 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-- 218 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH--
Confidence 888888887744211111234433445678888888874454321 12466777 88888888764 23210 11111
Q ss_pred CccCCCCCCCCCCccEEeeeCCCCCC--CCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccc
Q 041114 561 TVLKSPQPFVFCSLHKVTITFCPKLK--GLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPC 631 (680)
Q Consensus 561 ~~l~~~~~~~l~~L~~L~L~~c~~l~--~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C 631 (680)
..+++|++|++++|..++ .++.+..+++|++|++++|..+..... ..++.+|+|+.|++++|
T Consensus 219 --------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 --------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred --------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 356788888888887543 245577788888888888763332211 12356888888888887
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=3.5e-13 Score=146.23 Aligned_cols=155 Identities=17% Similarity=0.105 Sum_probs=82.4
Q ss_pred CcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEE
Q 041114 417 PLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFT 494 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~ 494 (680)
++|++|++++ +.+..+|.. +.+|++|++++| .+..+|. + .++|++|++++|. .+.+++++++|+.|++.
T Consensus 91 ~~L~~L~l~~-n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASC-NSLTELPEL---PQSLKSLLVDNN-NLKALSD--L--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCS-SCCSSCCCC---CTTCCEEECCSS-CCSCCCS--C--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred CCCCEEEccC-CcCCccccc---cCCCcEEECCCC-ccCcccC--C--CCCCCEEECcCCCCCCCcccCCCCCCCEEECC
Confidence 3455555554 244444432 244555555555 4544443 1 1466677776654 22245666777777776
Q ss_pred eccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCc
Q 041114 495 LRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSL 574 (680)
Q Consensus 495 ~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L 574 (680)
.+.... ++.. ..+|+.|+++++. +..++ .+..+++|+.|+++++. +..++ ...++|
T Consensus 162 ~N~l~~---lp~~---~~~L~~L~L~~n~-l~~l~--~~~~l~~L~~L~l~~N~-l~~l~--------------~~~~~L 217 (454)
T 1jl5_A 162 NNSLKK---LPDL---PPSLEFIAAGNNQ-LEELP--ELQNLPFLTAIYADNNS-LKKLP--------------DLPLSL 217 (454)
T ss_dssp SSCCSC---CCCC---CTTCCEEECCSSC-CSSCC--CCTTCTTCCEEECCSSC-CSSCC--------------CCCTTC
T ss_pred CCcCcc---cCCC---cccccEEECcCCc-CCcCc--cccCCCCCCEEECCCCc-CCcCC--------------CCcCcc
Confidence 443332 2221 2377777777764 44444 57777788888887653 32221 112356
Q ss_pred cEEeeeCCCCCCCCCCcCCCCCCCEEeEecC
Q 041114 575 HKVTITFCPKLKGLTFLVFAPNLKCLSLFDC 605 (680)
Q Consensus 575 ~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c 605 (680)
++|++++|. +..+|.++.+++|++|+++++
T Consensus 218 ~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 218 ESIVAGNNI-LEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CEEECCSSC-CSSCCCCTTCTTCCEEECCSS
T ss_pred cEEECcCCc-CCcccccCCCCCCCEEECCCC
Confidence 666666553 334555555666666666553
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=5.9e-13 Score=149.03 Aligned_cols=167 Identities=22% Similarity=0.213 Sum_probs=97.7
Q ss_pred ccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCcee
Q 041114 414 QFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEEL 491 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L 491 (680)
..+.+|+.|++++ +.+..+| .++.|++|++|+|++| .+..+|. ++.|++|++|++++|. .+..+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 3455555555555 2455554 3555555555555555 4555554 5555555555555543 23344445555555
Q ss_pred EEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF 571 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l 571 (680)
++..+....+..+. .+++|+.|+|++|. +..+ ..+..+++|+.|+|++| .+..+++ + ..+
T Consensus 115 ~Ls~N~l~~l~~l~----~l~~L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l----------~~l 174 (605)
T 1m9s_A 115 SLEHNGISDINGLV----HLPQLESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDIVP--L----------AGL 174 (605)
T ss_dssp ECTTSCCCCCGGGG----GCTTCSEEECCSSC-CCCC--GGGGSCTTCSEEECCSS-CCCCCGG--G----------TTC
T ss_pred EecCCCCCCCcccc----CCCccCEEECCCCc-cCCc--hhhcccCCCCEEECcCC-cCCCchh--h----------ccC
Confidence 55433333322222 23467777777765 3333 36777888888888775 3443322 2 567
Q ss_pred CCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCc
Q 041114 572 CSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 572 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~ 606 (680)
++|+.|+|++|. +..+|.+..+++|+.|+|++|+
T Consensus 175 ~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 888888888865 5666778888888888888754
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=134.45 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=93.9
Q ss_pred ccCCcceEEEccCCCCccc-cc----hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchh--------
Q 041114 414 QFMPLLKVLNMSRETNIKE-LL----GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAK-------- 480 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~-lP----~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~-------- 480 (680)
..+++|++|+|++| .+.. .| ..+..+++|++|++++| .+..+|...++.+++|++|++++|....
T Consensus 114 ~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 67777888888874 5543 22 34456778888888887 5777665447778888888888775321
Q ss_pred hhcCCCCCceeEEEeccchhhhhhhh-chhhhccccEEEEeccCCCCcccccccccC---CCCCEEEEeccCCcceeecc
Q 041114 481 ELLGLKHLEELDFTLRCVHSLQILVS-SNKLQSCTRALVLIRFKDSKSIDVIALARL---KHLSTLHFSKCEELEEWKTD 556 (680)
Q Consensus 481 ~l~~L~~L~~L~i~~~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~l~~l~~~ 556 (680)
.+..+++|+.|+++.+....+...+. ....+++|+.|+++++.-....|. .+..+ ++|++|+++++ .++.++.
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N-~l~~lp~- 268 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFA-GLEQVPK- 268 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSS-CCCSCCS-
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCC-CCCchhh-
Confidence 12456666666666544433332221 112334566666665542222121 22222 46666666543 2332211
Q ss_pred cCCCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEec
Q 041114 557 YTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFD 604 (680)
Q Consensus 557 ~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~ 604 (680)
..+++|+.|+|++|. ++.+|.+..+++|+.|++++
T Consensus 269 ------------~~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 269 ------------GLPAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDG 303 (310)
T ss_dssp ------------CCCSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSS
T ss_pred ------------hhcCCCCEEECCCCc-CCCCchhhhCCCccEEECcC
Confidence 112456666666544 44444455556666666655
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=2.2e-13 Score=144.90 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=155.6
Q ss_pred ccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCC--CCcc-ccchhh-------hccCCCCE
Q 041114 376 WETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRE--TNIK-ELLGEL-------KALVNLKC 445 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~--~~i~-~lP~~i-------~~L~~Lr~ 445 (680)
.+++++|.+.+|.+.... ...++.. +..+++|++|+|++| +.+. .+|.++ ..+++|++
T Consensus 31 ~~~L~~L~L~~n~i~~~~-----------~~~l~~~-l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEA-----------ARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp CSCCCEEECTTSEECHHH-----------HHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred CCCccEEECCCCCCCHHH-----------HHHHHHH-HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 357888988888775421 1123332 678999999999985 2222 445554 78899999
Q ss_pred EeccCCCCccc-----cchhhhcCCCCCcEeeccCCcc----hhh----hcCC---------CCCceeEEEeccch--hh
Q 041114 446 VNLEWARDLVT-----IPLEVISNFSKLRVLRLFGTVL----AKE----LLGL---------KHLEELDFTLRCVH--SL 501 (680)
Q Consensus 446 L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~----~~~----l~~L---------~~L~~L~i~~~~~~--~l 501 (680)
|+|++| .+.. +|.. +.++++|++|++++|.. +.. +..+ ++|+.|++..+... .+
T Consensus 99 L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 99 VRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp EECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred EECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 999999 6776 7775 88999999999999863 222 3334 88999998866543 34
Q ss_pred hhhhhchhhhccccEEEEeccCCCCc-----ccccccccCCCCCEEEEeccCCc----ceeecccCCCCccCCCCCCCCC
Q 041114 502 QILVSSNKLQSCTRALVLIRFKDSKS-----IDVIALARLKHLSTLHFSKCEEL----EEWKTDYTSGTVLKSPQPFVFC 572 (680)
Q Consensus 502 ~~l~~~~~l~~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l----~~l~~~~~~~~~l~~~~~~~l~ 572 (680)
..+......+++|+.|++++|. +.. +....+..+++|+.|+++++..- ..++ ..+ ..++
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l----------~~~~ 244 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IAL----------KSWP 244 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHG----------GGCT
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHH----------ccCC
Confidence 4343444445689999999885 331 11126778999999999986531 2221 222 4678
Q ss_pred CccEEeeeCCCCCCCC------CCc--CCCCCCCEEeEecCcchh----HhhhcCCCCCCCcccccCccccc
Q 041114 573 SLHKVTITFCPKLKGL------TFL--VFAPNLKCLSLFDCTAME----EIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 573 ~L~~L~L~~c~~l~~l------~~l--~~l~~L~~L~l~~c~~l~----~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
+|++|+|++|. ++.. ..+ +.+++|++|++++|..-. .++.. ..+++|+|+.|++++|+
T Consensus 245 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 245 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH-HHHHCTTCCEEECTTSB
T ss_pred CcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH-HHhcCCCceEEEccCCc
Confidence 99999999987 3332 233 458999999999975333 24432 22458999999999876
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=3.9e-12 Score=129.58 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=130.6
Q ss_pred ccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCC
Q 041114 374 KEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 374 ~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~ 453 (680)
....+++.+.+.++.+..+ +. +..+++|++|+|++ +.+..+|. ++.+++|++|++++| .
T Consensus 43 ~~l~~L~~L~l~~~~i~~~----------------~~--~~~l~~L~~L~L~~-n~l~~~~~-l~~l~~L~~L~l~~n-~ 101 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV----------------QG--IQYLPNVTKLFLNG-NKLTDIKP-LANLKNLGWLFLDEN-K 101 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC----------------TT--GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-C
T ss_pred hhcCcccEEEccCCCcccC----------------hh--HhcCCCCCEEEccC-CccCCCcc-cccCCCCCEEECCCC-c
Confidence 3456889999988877643 32 67789999999999 48888887 899999999999999 7
Q ss_pred ccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccccc
Q 041114 454 LVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVI 531 (680)
Q Consensus 454 l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~ 531 (680)
++.+|. ++.+++|++|++++|. .+..+..+++|+.|++..+....+..+ ..+++|+.|+++++. +...+
T Consensus 102 l~~~~~--l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~L~~N~-l~~~~-- 172 (291)
T 1h6t_A 102 VKDLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL----SRLTKLDTLSLEDNQ-ISDIV-- 172 (291)
T ss_dssp CCCGGG--GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSC-CCCCG--
T ss_pred CCCChh--hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhh----ccCCCCCEEEccCCc-cccch--
Confidence 888876 8999999999999886 456778889999999986655555333 234589999999886 45444
Q ss_pred ccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 532 ALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
.+..+++|+.|+++++ .++.++ .+ ..+++|+.|++++++
T Consensus 173 ~l~~l~~L~~L~L~~N-~i~~l~--~l----------~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 PLAGLTKLQNLYLSKN-HISDLR--AL----------AGLKNLDVLELFSQE 211 (291)
T ss_dssp GGTTCTTCCEEECCSS-CCCBCG--GG----------TTCTTCSEEEEEEEE
T ss_pred hhcCCCccCEEECCCC-cCCCCh--hh----------ccCCCCCEEECcCCc
Confidence 3888999999999976 455432 12 578999999999976
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=9.5e-12 Score=123.82 Aligned_cols=164 Identities=20% Similarity=0.254 Sum_probs=102.2
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhh
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKE 481 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~ 481 (680)
+.+..+|..+ ...|+.|+|++ +.+..++ ..++.+++|++|+|++| .+..+|.+.+..+++|++|+++++..-
T Consensus 24 ~~l~~~p~~~---~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-- 96 (251)
T 3m19_A 24 KSLDSVPSGI---PADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLA-- 96 (251)
T ss_dssp CCCSSCCSCC---CTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC--
T ss_pred CCccccCCCC---CCCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCccc--
Confidence 3455666652 25677777777 4666655 45777777777777777 677776655677777777777766311
Q ss_pred hcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCC
Q 041114 482 LLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGT 561 (680)
Q Consensus 482 l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 561 (680)
.+. +.....+++|+.|+++++. +..++...+..+++|+.|+++++ .+..++...+
T Consensus 97 ------------------~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~--- 151 (251)
T 3m19_A 97 ------------------SLP--LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAF--- 151 (251)
T ss_dssp ------------------CCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT---
T ss_pred ------------------ccC--hhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCC-cCCccCHHHc---
Confidence 000 0011122366677776664 44444445677788888888764 4554433333
Q ss_pred ccCCCCCCCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCc
Q 041114 562 VLKSPQPFVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 562 ~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 606 (680)
..+++|+.|+|+++. ++.++ .+..+++|++|++++++
T Consensus 152 -------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 152 -------DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -------CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 567788888888865 44444 36678888888887754
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=5.2e-12 Score=141.34 Aligned_cols=168 Identities=19% Similarity=0.218 Sum_probs=126.7
Q ss_pred ccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCC
Q 041114 374 KEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 374 ~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~ 453 (680)
..+.+++.|.+.++.+. .+|. |..+++|+.|+|++| .+..+|. ++.|++|++|+|++| .
T Consensus 40 ~~L~~L~~L~l~~n~i~----------------~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~ 98 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK----------------SVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-K 98 (605)
T ss_dssp HHHTTCCCCBCTTCCCC----------------CCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-C
T ss_pred hcCCCCCEEECcCCCCC----------------CChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-C
Confidence 34467777777776665 3442 778899999999994 8888876 889999999999999 7
Q ss_pred ccccchhhhcCCCCCcEeeccCCc--chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCccccc
Q 041114 454 LVTIPLEVISNFSKLRVLRLFGTV--LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVI 531 (680)
Q Consensus 454 l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~ 531 (680)
+..+|. ++.|++|++|++++|. .+..+..|++|+.|+++.+....+..+. .+++|+.|+|++|. +...+
T Consensus 99 l~~l~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~Ls~N~-l~~~~-- 169 (605)
T 1m9s_A 99 IKDLSS--LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQ-ISDIV-- 169 (605)
T ss_dssp CCCCTT--STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGG----SCTTCSEEECCSSC-CCCCG--
T ss_pred CCCChh--hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhc----ccCCCCEEECcCCc-CCCch--
Confidence 888874 8999999999999876 4567788889999998866655553332 34589999999886 44443
Q ss_pred ccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCC
Q 041114 532 ALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPK 584 (680)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~ 584 (680)
.+..+++|+.|+|++| .+..+ ..+ ..+++|+.|+|++|+.
T Consensus 170 ~l~~l~~L~~L~Ls~N-~i~~l--~~l----------~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKN-HISDL--RAL----------AGLKNLDVLELFSQEC 209 (605)
T ss_dssp GGTTCTTCCEEECCSS-CCCBC--GGG----------TTCTTCSEEECCSEEE
T ss_pred hhccCCCCCEEECcCC-CCCCC--hHH----------ccCCCCCEEEccCCcC
Confidence 3788999999999876 44433 122 5788999999998763
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=3.8e-12 Score=121.64 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=104.2
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCC
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHL 488 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L 488 (680)
...+++|++|++++ +.+..+| ++..+++|++|++++| .+..+|. ++.+++|++|++++|.. +..+..+
T Consensus 40 ~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l--- 111 (197)
T 4ezg_A 40 EAQMNSLTYITLAN-INVTDLT-GIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGL--- 111 (197)
T ss_dssp HHHHHTCCEEEEES-SCCSCCT-TGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTC---
T ss_pred hhhcCCccEEeccC-CCccChH-HHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCcccChhhcCC---
Confidence 35678899999998 5888888 7889999999999998 7877764 88899999999888742 1222222
Q ss_pred ceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCC
Q 041114 489 EELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQP 568 (680)
Q Consensus 489 ~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~ 568 (680)
++|+.|+++++. +.......+..+++|+.|++++|..+..++ .+
T Consensus 112 -----------------------~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l---------- 155 (197)
T 4ezg_A 112 -----------------------TSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM--PL---------- 155 (197)
T ss_dssp -----------------------TTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GG----------
T ss_pred -----------------------CCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH--hh----------
Confidence 255566666554 222112356777888888888765455432 12
Q ss_pred CCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecC
Q 041114 569 FVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDC 605 (680)
Q Consensus 569 ~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c 605 (680)
..+++|+.|++++|. +..++.+..+++|++|++++.
T Consensus 156 ~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 156 KTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred cCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCc
Confidence 567888888888865 566667778888888888774
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.29 E-value=2.4e-11 Score=120.92 Aligned_cols=173 Identities=23% Similarity=0.271 Sum_probs=121.4
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccc-hhh
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GEL 437 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i 437 (680)
.+...+..+..+|.... .+++.|.+.+|.+. .+++..|.++++|++|+|++| .+..+| ..+
T Consensus 18 ~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~----------------~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 79 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA----------------TLSDATFRGLTKLTWLNLDYN-QLQTLSAGVF 79 (251)
T ss_dssp EEECTTCCCSSCCSCCC-TTCCEEECTTSCCC----------------CCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred EEecCCCCccccCCCCC-CCCCEEEccCCCcC----------------ccCHhHhcCcccCCEEECCCC-cCCccCHhHh
Confidence 34455555555554322 46667777666654 455555889999999999994 888776 458
Q ss_pred hccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEE
Q 041114 438 KALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRAL 517 (680)
Q Consensus 438 ~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L 517 (680)
..+++|++|+|++| .++.+|...++.+++|++|++++|..- .+. +.....+++|+.|
T Consensus 80 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---------------------~~~~~~l~~L~~L 136 (251)
T 3m19_A 80 DDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLK-SLP---------------------SGVFDRLTKLKEL 136 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCC---------------------TTTTTTCTTCCEE
T ss_pred ccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCC-CcC---------------------hhHhccCCcccEE
Confidence 99999999999999 799999776899999999999987411 100 0001122367777
Q ss_pred EEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCC
Q 041114 518 VLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPK 584 (680)
Q Consensus 518 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~ 584 (680)
+++++. +..++...+..+++|+.|+++++ .+..++...+ ..+++|+.|+|++++.
T Consensus 137 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 137 RLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF----------DRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT----------TTCTTCCEEECCSCCB
T ss_pred ECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH----------hCCCCCCEEEeeCCce
Confidence 777764 45555446788899999999875 4555544333 5678999999999774
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=4.4e-12 Score=130.50 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=123.7
Q ss_pred cCCcceEEEccCCCCcc-ccchhh--hccCCCCEEeccCCCCccc-cc---hhhhcCCCCCcEeeccCCcc----hhhhc
Q 041114 415 FMPLLKVLNMSRETNIK-ELLGEL--KALVNLKCVNLEWARDLVT-IP---LEVISNFSKLRVLRLFGTVL----AKELL 483 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~-~lP~~i--~~L~~Lr~L~L~~~~~l~~-lP---~~~i~~L~~L~~L~l~~~~~----~~~l~ 483 (680)
.+++|++|++++| .+. ..|..+ +.+++|++|++++| .+.. .| ...+..+++|++|++++|.. +..+.
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 3466899999885 554 566666 88889999999988 5664 22 11256788899999988762 34566
Q ss_pred CCCCCceeEEEeccchhhhhhhhc--hhhhccccEEEEeccCCCCccccc---ccccCCCCCEEEEeccCCcceeecccC
Q 041114 484 GLKHLEELDFTLRCVHSLQILVSS--NKLQSCTRALVLIRFKDSKSIDVI---ALARLKHLSTLHFSKCEELEEWKTDYT 558 (680)
Q Consensus 484 ~L~~L~~L~i~~~~~~~l~~l~~~--~~l~~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (680)
.+++|+.|+++.+.......++.. ...+++|+.|+++++. +..++.. .+..+++|++|+++++. +....+...
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~ 244 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA 244 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH
Confidence 788888888876554332222211 1334578888888775 3333311 23567888888887653 443322211
Q ss_pred CCCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 559 SGTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 559 ~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
. ....+++|++|+|++|. ++.+|. ..+++|++|+++++ .+..++. ...+|+|+.|++++.+
T Consensus 245 ~-------~~~~~~~L~~L~Ls~N~-l~~lp~-~~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 245 P-------RCMWSSALNSLNLSFAG-LEQVPK-GLPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp S-------SCCCCTTCCCEECCSSC-CCSCCS-CCCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred H-------hccCcCcCCEEECCCCC-CCchhh-hhcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence 1 00123688888888765 445553 22378888888874 3554432 2567777777776644
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=5e-12 Score=126.69 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=105.8
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhh
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKEL 482 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l 482 (680)
+.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++| .+..+|. ++++++|++|++++|.
T Consensus 29 ~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~----- 96 (263)
T 1xeu_A 29 QSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR----- 96 (263)
T ss_dssp SCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-----
T ss_pred CCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-----
Confidence 34444542 556677777777773 666666 5667777777777776 5666665 6667777777776653
Q ss_pred cCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCc
Q 041114 483 LGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTV 562 (680)
Q Consensus 483 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (680)
...+.. ... .+|+.|+++++. +...+ .+..+++|+.|+++++ .++.++ .+
T Consensus 97 ---------------l~~l~~---~~~--~~L~~L~L~~N~-l~~~~--~l~~l~~L~~L~Ls~N-~i~~~~--~l---- 146 (263)
T 1xeu_A 97 ---------------LKNLNG---IPS--ACLSRLFLDNNE-LRDTD--SLIHLKNLEILSIRNN-KLKSIV--ML---- 146 (263)
T ss_dssp ---------------CSCCTT---CCC--SSCCEEECCSSC-CSBSG--GGTTCTTCCEEECTTS-CCCBCG--GG----
T ss_pred ---------------cCCcCc---ccc--CcccEEEccCCc-cCCCh--hhcCcccccEEECCCC-cCCCCh--HH----
Confidence 111111 111 478889988875 55544 6888999999999875 455442 22
Q ss_pred cCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCc
Q 041114 563 LKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 563 l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~ 606 (680)
..+++|+.|++++|. +..++.+..+++|+.|++++++
T Consensus 147 ------~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 147 ------GFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp ------GGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred ------ccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 578999999999976 5556788899999999999854
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=3.5e-12 Score=135.57 Aligned_cols=222 Identities=14% Similarity=0.054 Sum_probs=148.6
Q ss_pred ccccchhhhccCCcceEEEccCCCCccc-----cchhhhccCCCCEEeccCCCCcc----ccchhh------hcCCCCCc
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKE-----LLGELKALVNLKCVNLEWARDLV----TIPLEV------ISNFSKLR 469 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~-----lP~~i~~L~~Lr~L~L~~~~~l~----~lP~~~------i~~L~~L~ 469 (680)
+..++.. +..+++|++|+|++| .+.. ++..+..+++|++|+|++| .+. .+|.++ +.++++|+
T Consensus 21 ~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 21 EKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCccc
Confidence 3355655 788999999999995 6654 4445778999999999998 454 345441 37899999
Q ss_pred EeeccCCcc--------hhhhcCCCCCceeEEEeccchh--hhhhhhchhhh---------ccccEEEEeccCCC-Cccc
Q 041114 470 VLRLFGTVL--------AKELLGLKHLEELDFTLRCVHS--LQILVSSNKLQ---------SCTRALVLIRFKDS-KSID 529 (680)
Q Consensus 470 ~L~l~~~~~--------~~~l~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~---------~~L~~L~l~~~~~~-~~~~ 529 (680)
+|++++|.. +..+.++++|+.|++..+.... ...++.....+ ++|+.|+++++.-. ...+
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 999998862 3367889999999998665432 22233322222 69999999998632 1222
Q ss_pred c--cccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCC----CCCC-CcCCCCCCCEEeE
Q 041114 530 V--IALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKL----KGLT-FLVFAPNLKCLSL 602 (680)
Q Consensus 530 ~--~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l----~~l~-~l~~l~~L~~L~l 602 (680)
. ..+..+++|++|++++|. +........ .+..+..+++|++|+|++|..- ..+| .+..+++|++|++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l-----~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNG-IRPEGIEHL-----LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSC-CCHHHHHHH-----HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred HHHHHHHhCCCcCEEECcCCC-CCHhHHHHH-----HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 1 256688999999999874 331100000 0012257899999999998731 2333 4678999999999
Q ss_pred ecCcchhH----hhhcCCCCCCCcccccCccccccCCC
Q 041114 603 FDCTAMEE----IISAGKFVHTPEMMGNTMDPCAKLRK 636 (680)
Q Consensus 603 ~~c~~l~~----i~~~~~~~~lp~L~~L~i~~C~~L~~ 636 (680)
++|..-.. ++.....+.+++|+.|++++|+ +..
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~ 288 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IEL 288 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCH
Confidence 99763222 2222111458999999998875 554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=3.8e-11 Score=115.73 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=83.8
Q ss_pred CCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEE
Q 041114 416 MPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFT 494 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~ 494 (680)
.++|++|++++ +.+..+|.. ++.+++|++|++++| .++.+|...++.+++|++|++++|..- .+.
T Consensus 27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~----------- 92 (208)
T 2o6s_A 27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLP----------- 92 (208)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-----------
T ss_pred CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC-ccC-----------
Confidence 35677777777 366666643 567777777777777 677777654567777777777765310 000
Q ss_pred eccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCc
Q 041114 495 LRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSL 574 (680)
Q Consensus 495 ~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L 574 (680)
+.....+++|+.|+++++. +..++...+..+++|+.|+++++ .+..++...+ ..+++|
T Consensus 93 ----------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~----------~~l~~L 150 (208)
T 2o6s_A 93 ----------NGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVF----------DRLTSL 150 (208)
T ss_dssp ----------TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT----------TTCTTC
T ss_pred ----------HhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCHHHh----------ccCCCc
Confidence 0000111244444444443 33333234566777777777764 3443333222 456777
Q ss_pred cEEeeeCCCCCCCCCCcCCCCCCCEEeEecC
Q 041114 575 HKVTITFCPKLKGLTFLVFAPNLKCLSLFDC 605 (680)
Q Consensus 575 ~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c 605 (680)
+.|++++++ +.+.+++|++|+++.+
T Consensus 151 ~~L~l~~N~------~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 151 QYIWLHDNP------WDCTCPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSCC------BCCCTTTTHHHHHHHH
T ss_pred cEEEecCCC------eecCCCCHHHHHHHHH
Confidence 777777763 3455666777766653
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.21 E-value=9.9e-11 Score=132.66 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=107.5
Q ss_pred ccCCcceEEEccCCCCcc---ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc-----chhhhcCC
Q 041114 414 QFMPLLKVLNMSRETNIK---ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-----LAKELLGL 485 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~---~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L 485 (680)
..+++|++|++++| .+. ..|..+..+.+|++|++..+ ....++.. +..+.+|+.+++.++. ....+..+
T Consensus 368 ~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 368 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CBCTTCCEEECCSS-CCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccchhhcc-ccccccccccchhhhhhhhhhhcccc-cccccccc-ccccccccchhhhhccccccccccccccc
Confidence 45677777777774 332 34556667777777777777 56666665 6677777777776654 12234455
Q ss_pred CCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCC
Q 041114 486 KHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKS 565 (680)
Q Consensus 486 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 565 (680)
++++.+++..+...... +......++++.|+++++..........+..+++|+.|+++++ .++.+++..+
T Consensus 445 ~~l~~l~ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f------- 514 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF------- 514 (635)
T ss_dssp TTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-------
T ss_pred ccccccccccccccccc--ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHH-------
Confidence 56665555433222111 1122233456666666554333222235566666666666654 4444433333
Q ss_pred CCCCCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCcchhHhhhcCCCCCC-CcccccCcccc
Q 041114 566 PQPFVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCTAMEEIISAGKFVHT-PEMMGNTMDPC 631 (680)
Q Consensus 566 ~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~l-p~L~~L~i~~C 631 (680)
..+++|+.|+|+++. ++.++ .+..+++|++|+++++ .+..++.. .++.+ ++|+.|+++++
T Consensus 515 ---~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 515 ---NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQ-ELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp ---TTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS-CCCBCCSS-CTTCCCTTCCEEECTTC
T ss_pred ---cCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC-cCCCCCHH-HHHhhhCcCCEEEeeCC
Confidence 456666666666654 34433 2456666666666663 34444332 22334 35555555543
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=1.6e-11 Score=138.32 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCCCccEEeeeCCCC-CCC--CCCc-CCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCC--CCCCCc-
Q 041114 570 VFCSLHKVTITFCPK-LKG--LTFL-VFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRK--LPLDSN- 642 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~-l~~--l~~l-~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~--lP~~~~- 642 (680)
.+++|++|+++.|.. +.. +..+ ..+++|++|++++|. +...........+++|+.|++++|+ +.. +|....
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 356677777766553 111 1112 246778888887765 3321111122457888888888887 432 221111
Q ss_pred -cccCcceEEecc
Q 041114 643 -SALEHKIAIRGE 654 (680)
Q Consensus 643 -~~l~~L~i~~~~ 654 (680)
..|+.|.+.+|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 137777777776
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=3.6e-11 Score=126.59 Aligned_cols=231 Identities=16% Similarity=0.076 Sum_probs=147.0
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCC-cceEEEccCCCCcccc-chhhhcc-----CCCCEEecc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMP-LLKVLNMSRETNIKEL-LGELKAL-----VNLKCVNLE 449 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~-~Lr~LdL~~~~~i~~l-P~~i~~L-----~~Lr~L~L~ 449 (680)
.++++|.+++|.+...+.. .+. ..|..++ +|++|+|++| .+... |..+..+ ++|++|+|+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~-----------~l~-~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTV-----------ELI-QAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TTCCEEECTTSCGGGSCHH-----------HHH-HHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred CCceEEEccCCCCChHHHH-----------HHH-HHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECc
Confidence 4588999988877643210 111 3477788 8999999995 77665 5667765 899999999
Q ss_pred CCCCccccchhh----hcCC-CCCcEeeccCCcc----hhh----hcCC-CCCceeEEEeccch--hhhhhhhchhhh-c
Q 041114 450 WARDLVTIPLEV----ISNF-SKLRVLRLFGTVL----AKE----LLGL-KHLEELDFTLRCVH--SLQILVSSNKLQ-S 512 (680)
Q Consensus 450 ~~~~l~~lP~~~----i~~L-~~L~~L~l~~~~~----~~~----l~~L-~~L~~L~i~~~~~~--~l~~l~~~~~l~-~ 512 (680)
+| .+...+... +..+ ++|++|++++|.. +.. +..+ ++|+.|+++.+... ....+....... .
T Consensus 89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred CC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 99 687655432 3344 8999999998862 222 3443 58999998755443 122333322222 4
Q ss_pred cccEEEEeccCCCCccccc----ccccC-CCCCEEEEeccCCcceeecccCCCCccCCCCCCC-CCCccEEeeeCCCCCC
Q 041114 513 CTRALVLIRFKDSKSIDVI----ALARL-KHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFV-FCSLHKVTITFCPKLK 586 (680)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~-l~~L~~L~L~~c~~l~ 586 (680)
+|+.|++++|. +...... .+... ++|+.|+++++. +.......+. ..+.. .++|++|+|++|. ++
T Consensus 168 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~------~~l~~~~~~L~~L~Ls~N~-l~ 238 (362)
T 3goz_A 168 NVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA------YIFSSIPNHVVSLNLCLNC-LH 238 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH------HHHHHSCTTCCEEECCSSC-CC
T ss_pred cccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH------HHHhcCCCCceEEECcCCC-CC
Confidence 89999999885 3332221 33445 599999999764 4431111110 00012 3689999999975 55
Q ss_pred CCC------CcCCCCCCCEEeEecCc-------chhHhhhcCCCCCCCcccccCccccc
Q 041114 587 GLT------FLVFAPNLKCLSLFDCT-------AMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 587 ~l~------~l~~l~~L~~L~l~~c~-------~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
..+ .+..+++|+.|++++|. .+..+.. .+..+++|+.|++++++
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--TSTTCCEEEEECTTSCB
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH--HhccCCceEEEecCCCc
Confidence 543 24678999999999875 1333322 33578888888888765
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=1.1e-10 Score=111.29 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=99.4
Q ss_pred ccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCC
Q 041114 374 KEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARD 453 (680)
Q Consensus 374 ~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~ 453 (680)
....+++++.+.++.+.. +| + +..+++|++|++++| .+..+| .+..+++|++|++++| .
T Consensus 41 ~~l~~L~~L~l~~n~i~~----------------l~-~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n-~ 99 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD----------------LT-G-IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGK-D 99 (197)
T ss_dssp HHHHTCCEEEEESSCCSC----------------CT-T-GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECT-T
T ss_pred hhcCCccEEeccCCCccC----------------hH-H-HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECC-c
Confidence 344689999999887763 44 2 778999999999996 776665 8899999999999999 6
Q ss_pred ccc-cchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcc
Q 041114 454 LVT-IPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSI 528 (680)
Q Consensus 454 l~~-lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~ 528 (680)
+.. .|.. ++++++|++|++++|.. +..+..+++|+ .|++++|..+..+
T Consensus 100 l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~--------------------------~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 100 VTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVN--------------------------SIDLSYNGAITDI 152 (197)
T ss_dssp CBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC--------------------------EEECCSCTBCCCC
T ss_pred cCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCCCCC--------------------------EEEccCCCCcccc
Confidence 775 5665 99999999999998752 33444444444 4444444323333
Q ss_pred cccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 529 DVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 529 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
+ .+..+++|+.|++++|. +..++ . +..+++|+.|++++++
T Consensus 153 ~--~l~~l~~L~~L~l~~n~-i~~~~--~----------l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 153 M--PLKTLPELKSLNIQFDG-VHDYR--G----------IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp G--GGGGCSSCCEEECTTBC-CCCCT--T----------GGGCSSCCEEEECBC-
T ss_pred H--hhcCCCCCCEEECCCCC-CcChH--H----------hccCCCCCEEEeeCcc
Confidence 3 45666666777766542 33221 1 1456667777776654
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=9.2e-11 Score=117.45 Aligned_cols=132 Identities=24% Similarity=0.225 Sum_probs=93.5
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--ch
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LA 479 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~ 479 (680)
++.+..+| . +..+++|++|+|++ +.+..+|. ++.+++|++|++++| .++.+|. +.. .+|++|++++|. .+
T Consensus 50 ~n~i~~l~-~-l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 50 NSNIQSLA-G-MQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRN-RLKNLNG--IPS-ACLSRLFLDNNELRDT 121 (263)
T ss_dssp TSCCCCCT-T-GGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSS-CCSCCTT--CCC-SSCCEEECCSSCCSBS
T ss_pred CCCcccch-H-HhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCC-ccCCcCc--ccc-CcccEEEccCCccCCC
Confidence 55677787 3 88999999999999 48999987 999999999999999 7999987 455 999999999875 22
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
..+..++ +|+.|+++++. +...+ .+..+++|+.|+++++ .+..+ ..+
T Consensus 122 ~~l~~l~--------------------------~L~~L~Ls~N~-i~~~~--~l~~l~~L~~L~L~~N-~i~~~--~~l- 168 (263)
T 1xeu_A 122 DSLIHLK--------------------------NLEILSIRNNK-LKSIV--MLGFLSKLEVLDLHGN-EITNT--GGL- 168 (263)
T ss_dssp GGGTTCT--------------------------TCCEEECTTSC-CCBCG--GGGGCTTCCEEECTTS-CCCBC--TTS-
T ss_pred hhhcCcc--------------------------cccEEECCCCc-CCCCh--HHccCCCCCEEECCCC-cCcch--HHh-
Confidence 2333344 45555555544 33333 4666777777777664 33322 222
Q ss_pred CCccCCCCCCCCCCccEEeeeCCC
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
..+++|+.|++++++
T Consensus 169 ---------~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 ---------TRLKKVNWIDLTGQK 183 (263)
T ss_dssp ---------TTCCCCCEEEEEEEE
T ss_pred ---------ccCCCCCEEeCCCCc
Confidence 456777777777755
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=7.3e-11 Score=130.69 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=106.2
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc--h
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL--A 479 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~--~ 479 (680)
++.+..+|..+ +++|++|+|++ +.+..+| +.+++|++|++++| .++.+|. +++ +|++|++++|.. +
T Consensus 68 ~n~L~~lp~~l---~~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 68 RLNLSSLPDNL---PPQITVLEITQ-NALISLP---ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp SSCCSCCCSCC---CTTCSEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEECCSSCCSCC
T ss_pred CCCCCccCHhH---cCCCCEEECcC-CCCcccc---cccCCCCEEEccCC-CCCCcch--hhc--CCCEEECCCCcCCCC
Confidence 44566677653 36788888888 4777777 45778888888887 6777776 554 788888877652 2
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
.. .+++|+.|+++.+.... ++. .+++|+.|+++++. +..++. +. ++|+.|+++++ .++.++. +.
T Consensus 136 p~--~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~--~~ 199 (571)
T 3cvr_A 136 PE--LPALLEYINADNNQLTM---LPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTN-LLESLPA--VP 199 (571)
T ss_dssp CC--CCTTCCEEECCSSCCSC---CCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSS-CCSSCCC--CC
T ss_pred CC--cCccccEEeCCCCccCc---CCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCC-CCCchhh--HH
Confidence 22 46677777776554333 222 34577778877775 444442 33 77788888764 4444432 21
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCCCC-cCCCCCCCEEeEecCcchhHh
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGLTF-LVFAPNLKCLSLFDCTAMEEI 611 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~l~~c~~l~~i 611 (680)
. .+ ....+.|+.|+|++|. ++.+|. +..+++|+.|++++++.-..+
T Consensus 200 ~-~L----~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 200 V-RN----HHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp -------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred H-hh----hcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 0 00 0011223778887765 455553 666788888888776543433
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=1.8e-12 Score=144.26 Aligned_cols=203 Identities=16% Similarity=0.090 Sum_probs=131.7
Q ss_pred ccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCcc-------------ccchhhhcCCCCCcEee-ccCCcch
Q 041114 414 QFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLV-------------TIPLEVISNFSKLRVLR-LFGTVLA 479 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~-------------~lP~~~i~~L~~L~~L~-l~~~~~~ 479 (680)
..+++|+.|+|++ +.++.+|.+|++|++|+.|+++++..+. .+|.. ++.|++|+.|+ ++.+ .+
T Consensus 346 ~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n-~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAA-YL 422 (567)
T ss_dssp STTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHH-HH
T ss_pred ccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhc-cc
Confidence 5678888999998 5888999999999999999987663122 22332 45555555554 2211 11
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
. +|..+.+. ...+..++. ..|+.|+++++. +..+| .+..+++|+.|+++++ .+..++. .+
T Consensus 423 ~------~L~~l~l~---~n~i~~l~~-----~~L~~L~Ls~n~-l~~lp--~~~~l~~L~~L~Ls~N-~l~~lp~-~~- 482 (567)
T 1dce_A 423 D------DLRSKFLL---ENSVLKMEY-----ADVRVLHLAHKD-LTVLC--HLEQLLLVTHLDLSHN-RLRALPP-AL- 482 (567)
T ss_dssp H------HHHHHHHH---HHHHHHHHH-----TTCSEEECTTSC-CSSCC--CGGGGTTCCEEECCSS-CCCCCCG-GG-
T ss_pred c------hhhhhhhh---cccccccCc-----cCceEEEecCCC-CCCCc--CccccccCcEeecCcc-cccccch-hh-
Confidence 1 11111111 011222211 258889999875 56666 4889999999999875 4555533 22
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCCCCcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCC
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGLTFLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL 639 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~ 639 (680)
+.+++|+.|+|+++. ++.+|.++.+++|+.|+++++ .+..++....++.+++|+.|++++++ |..+|.
T Consensus 483 ---------~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 483 ---------AALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp ---------GGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred ---------hcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 678999999999965 666888899999999999984 56666312235789999999999875 777765
Q ss_pred CCcc---ccCcceEE
Q 041114 640 DSNS---ALEHKIAI 651 (680)
Q Consensus 640 ~~~~---~l~~L~i~ 651 (680)
.... .+.+|...
T Consensus 551 ~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 551 IQERLAEMLPSVSSI 565 (567)
T ss_dssp CTTHHHHHCTTCSEE
T ss_pred HHHHHHHHCcccCcc
Confidence 4432 24455443
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.14 E-value=1.9e-11 Score=137.58 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=81.4
Q ss_pred hccCCcceEEEccCCCCcc-----ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc-------chh
Q 041114 413 FQFMPLLKVLNMSRETNIK-----ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV-------LAK 480 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~-------~~~ 480 (680)
+..+++|++|++++| .+. .++..+.++++|++|++++| .+..+|.. ++++++|++|++++.. ...
T Consensus 188 ~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred HhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-HhhhhHHHhhcccccccccchHHHHH
Confidence 456788888888874 443 45556677888888888887 67777764 7788888888886432 223
Q ss_pred hhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccc-cccccCCCCCEEEEec
Q 041114 481 ELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDV-IALARLKHLSTLHFSK 546 (680)
Q Consensus 481 ~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~ 546 (680)
.+..+++|+.|.+... ....++.....+++|+.|++++|. +..... ..+..+++|+.|++++
T Consensus 265 ~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp CCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred HhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 4556667777666422 222344444455678888888776 332222 1346677788877763
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.13 E-value=1.8e-10 Score=127.61 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=83.7
Q ss_pred cceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCC-CCceeEEEec
Q 041114 418 LLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLK-HLEELDFTLR 496 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~-~L~~L~i~~~ 496 (680)
+|++|+|++ +.+..+|..+. ++|++|+|++| .++.+| + .+++|++|++++|..- .++.+. +|+.|+++.+
T Consensus 60 ~L~~L~Ls~-n~L~~lp~~l~--~~L~~L~Ls~N-~l~~ip-~---~l~~L~~L~Ls~N~l~-~ip~l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSLPDNLP--PQITVLEITQN-ALISLP-E---LPASLEYLDACDNRLS-TLPELPASLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCS-SCCSCCCSCCC--TTCSEEECCSS-CCSCCC-C---CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred CccEEEeCC-CCCCccCHhHc--CCCCEEECcCC-CCcccc-c---ccCCCCEEEccCCCCC-CcchhhcCCCEEECCCC
Confidence 566666666 35555665442 55666666666 466665 2 3456666666655311 111111 5555555543
Q ss_pred cchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccE
Q 041114 497 CVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHK 576 (680)
Q Consensus 497 ~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~ 576 (680)
.... ++. .+++|+.|+++++. +..++. .+++|+.|+++++ .+..++. + . ++|+.
T Consensus 131 ~l~~---lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~L~~lp~--l----------~--~~L~~ 184 (571)
T 3cvr_A 131 QLTM---LPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNN-QLTFLPE--L----------P--ESLEA 184 (571)
T ss_dssp CCSC---CCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSS-CCSCCCC--C----------C--TTCCE
T ss_pred cCCC---CCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCC-CCCCcch--h----------h--CCCCE
Confidence 3332 222 23456666666554 333331 3456666666553 2332211 1 1 55666
Q ss_pred EeeeCCCCCCCCCCcCCCCCC-------CEEeEecCcchhHhhhcCCCCCCCcccccCccccc
Q 041114 577 VTITFCPKLKGLTFLVFAPNL-------KCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 577 L~L~~c~~l~~l~~l~~l~~L-------~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~ 632 (680)
|+|++|. ++.+|.+. ++| +.|+++++ .+..+|... ..+++|+.|++++++
T Consensus 185 L~Ls~N~-L~~lp~~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 185 LDVSTNL-LESLPAVP--VRNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNP 241 (571)
T ss_dssp EECCSSC-CSSCCCCC----------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSS
T ss_pred EECcCCC-CCchhhHH--HhhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCc
Confidence 6666543 44444422 144 66666653 344444322 336666666655544
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=3.8e-10 Score=108.61 Aligned_cols=176 Identities=14% Similarity=0.060 Sum_probs=125.8
Q ss_pred ceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEeccc
Q 041114 419 LKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 419 Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~ 498 (680)
-+.++.++ ..+..+|..+ ..+|++|++++| .++.+|.+.++.+++|++|+++++..- .+.
T Consensus 9 ~~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--------------- 68 (208)
T 2o6s_A 9 GTTVECYS-QGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP--------------- 68 (208)
T ss_dssp TTEEECCS-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCC-CCC---------------
T ss_pred CCEEEecC-CCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccC-ccC---------------
Confidence 35778888 5888898665 468999999999 799999876789999999999987411 000
Q ss_pred hhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEe
Q 041114 499 HSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVT 578 (680)
Q Consensus 499 ~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~ 578 (680)
+.....+++|+.|+++++. +..++...+..+++|+.|+++++ .+..++...+ ..+++|++|+
T Consensus 69 ------~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l~~L~~L~ 130 (208)
T 2o6s_A 69 ------NGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVF----------DKLTQLKDLR 130 (208)
T ss_dssp ------TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT----------TTCTTCCEEE
T ss_pred ------hhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCC-cCcccCHhHh----------ccCCcCCEEE
Confidence 0011123477788887775 44555446789999999999875 4555443333 5789999999
Q ss_pred eeCCCCCCCCCC--cCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCc
Q 041114 579 ITFCPKLKGLTF--LVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSN 642 (680)
Q Consensus 579 L~~c~~l~~l~~--l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~ 642 (680)
++++. ++.++. +..+++|++|++++++. .+.+|+|++|.++.+.--..+|....
T Consensus 131 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 131 LYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CCCCc-cceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence 99976 555553 67899999999998631 25678888888777554446665443
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=3.4e-10 Score=110.78 Aligned_cols=131 Identities=22% Similarity=0.241 Sum_probs=77.0
Q ss_pred CcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEe
Q 041114 417 PLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTL 495 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~ 495 (680)
++|++|+|++ +.+..+ |..++.+++|++|+|++| .+..+|.+.++.+++|++|++++|..- .+.
T Consensus 40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~------------ 104 (229)
T 3e6j_A 40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLT-VLP------------ 104 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCC------------
T ss_pred CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCC-ccC------------
Confidence 6677777777 366665 456777777777777777 577777654577777777777766310 000
Q ss_pred ccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCcc
Q 041114 496 RCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLH 575 (680)
Q Consensus 496 ~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~ 575 (680)
+.....+.+|+.|+++++. +..++. .+..+++|+.|+++++ .+..++...+ ..+++|+
T Consensus 105 ---------~~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l~~L~ 162 (229)
T 3e6j_A 105 ---------SAVFDRLVHLKELFMCCNK-LTELPR-GIERLTHLTHLALDQN-QLKSIPHGAF----------DRLSSLT 162 (229)
T ss_dssp ---------TTTTTTCTTCCEEECCSSC-CCSCCT-TGGGCTTCSEEECCSS-CCCCCCTTTT----------TTCTTCC
T ss_pred ---------hhHhCcchhhCeEeccCCc-ccccCc-ccccCCCCCEEECCCC-cCCccCHHHH----------hCCCCCC
Confidence 0000112245555555544 334442 5566777777777753 4444433322 4567777
Q ss_pred EEeeeCCCC
Q 041114 576 KVTITFCPK 584 (680)
Q Consensus 576 ~L~L~~c~~ 584 (680)
.|++++++.
T Consensus 163 ~L~l~~N~~ 171 (229)
T 3e6j_A 163 HAYLFGNPW 171 (229)
T ss_dssp EEECTTSCB
T ss_pred EEEeeCCCc
Confidence 777777653
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=3.1e-10 Score=110.29 Aligned_cols=143 Identities=25% Similarity=0.380 Sum_probs=98.1
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCcccc-chhh
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKEL-LGEL 437 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i 437 (680)
.+...+.++..+|... ..+++.|.+.+|.+. .+|+..|..+++|++|+|++| .+..+ |..+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~----------------~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~ 76 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIK----------------VIPPGAFSPYKKLRRIDLSNN-QISELAPDAF 76 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCC----------------EECTTSSTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCC----------------CcCHhHhhCCCCCCEEECCCC-cCCCcCHHHh
Confidence 3445555566665422 256777777776665 455555788889999999984 77776 6778
Q ss_pred hccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeEEEeccchhhhhhhhchhhhcc
Q 041114 438 KALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSC 513 (680)
Q Consensus 438 ~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~ 513 (680)
..+++|++|+|++| .++.+|.+.+..+++|++|++++|.. +..+..++ +
T Consensus 77 ~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~--------------------------~ 129 (220)
T 2v9t_B 77 QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH--------------------------N 129 (220)
T ss_dssp TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--------------------------T
T ss_pred hCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC--------------------------C
Confidence 89999999999998 78888887668889999999888741 12222333 5
Q ss_pred ccEEEEeccCCCCcccccccccCCCCCEEEEecc
Q 041114 514 TRALVLIRFKDSKSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 514 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
|+.|+++++. +..++...+..+++|+.|+++++
T Consensus 130 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 130 LNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 6666666654 34444345677788888888764
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.07 E-value=2e-11 Score=128.47 Aligned_cols=214 Identities=13% Similarity=0.040 Sum_probs=140.6
Q ss_pred ccchhhhccCCcceEEEccCCCCccccc-----hhhhccC-CCCEEeccCCCCccccchhhhcCC-----CCCcEeeccC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELL-----GELKALV-NLKCVNLEWARDLVTIPLEVISNF-----SKLRVLRLFG 475 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-----~~i~~L~-~Lr~L~L~~~~~l~~lP~~~i~~L-----~~L~~L~l~~ 475 (680)
...+.++...++|++|||++| .+...+ ..+..++ +|++|+|++| .+...+...+..+ ++|++|++++
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 444555666777999999995 788776 5678898 9999999999 7887644336665 9999999999
Q ss_pred Ccc----hh----hhcCC-CCCceeEEEeccchhhh--hhhhchhh-hccccEEEEeccCCCCcccc----cccccCC-C
Q 041114 476 TVL----AK----ELLGL-KHLEELDFTLRCVHSLQ--ILVSSNKL-QSCTRALVLIRFKDSKSIDV----IALARLK-H 538 (680)
Q Consensus 476 ~~~----~~----~l~~L-~~L~~L~i~~~~~~~l~--~l~~~~~l-~~~L~~L~l~~~~~~~~~~~----~~l~~l~-~ 538 (680)
|.. +. .+..+ ++|+.|+++.+...... .+...... .++|+.|+++++. +..... ..+..++ +
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTT
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCcc
Confidence 862 22 24555 89999999866544321 22221111 3589999999885 332111 1344555 9
Q ss_pred CCEEEEeccCCcceeecccCCCCccCCCCCCCC-CCccEEeeeCCCCCCC-----CC-CcCC-CCCCCEEeEecCcchhH
Q 041114 539 LSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF-CSLHKVTITFCPKLKG-----LT-FLVF-APNLKCLSLFDCTAMEE 610 (680)
Q Consensus 539 L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l-~~L~~L~L~~c~~l~~-----l~-~l~~-l~~L~~L~l~~c~~l~~ 610 (680)
|++|++++|. +.......+.. ....+ ++|++|+|++|. ++. ++ .+.. .++|++|+++++. +..
T Consensus 169 L~~L~Ls~n~-l~~~~~~~l~~------~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 169 VNSLNLRGNN-LASKNCAELAK------FLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHH------HHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCC
T ss_pred ccEeeecCCC-CchhhHHHHHH------HHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCc
Confidence 9999999864 43332221100 00233 599999999986 443 22 2333 4699999999964 433
Q ss_pred hhh---cCCCCCCCcccccCccccc
Q 041114 611 IIS---AGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 611 i~~---~~~~~~lp~L~~L~i~~C~ 632 (680)
... ...+..+++|+.|++++|.
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHHhcCCCccEEEeccCC
Confidence 211 1234678999999998886
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=2.6e-10 Score=119.88 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=58.5
Q ss_pred ccchhhhc-cCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hh
Q 041114 407 MITDGFFQ-FMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AK 480 (680)
Q Consensus 407 ~lp~~~~~-~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~ 480 (680)
.++...|. .+++|++|+|++ +.+..+| ..+..+++|++|+|++| .++.+|.+.+..+.+|++|++++|.. +.
T Consensus 53 ~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 53 RLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp EECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence 44555455 778888888887 4777776 45778888888888887 67777776577788888888877652 23
Q ss_pred hhcCCCCCceeEEE
Q 041114 481 ELLGLKHLEELDFT 494 (680)
Q Consensus 481 ~l~~L~~L~~L~i~ 494 (680)
.+..+++|+.|++.
T Consensus 131 ~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 131 AFEDMAQLQKLYLS 144 (361)
T ss_dssp TTTTCTTCCEEECC
T ss_pred HhCCcccCCEEECC
Confidence 34455555555554
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.06 E-value=3.4e-11 Score=131.03 Aligned_cols=204 Identities=17% Similarity=0.107 Sum_probs=105.7
Q ss_pred cceEEEccCCCCcc-----ccchhhhccCCCCEEeccCCCCcccc-----chhhhcCCCCCcEeeccCCcc--------h
Q 041114 418 LLKVLNMSRETNIK-----ELLGELKALVNLKCVNLEWARDLVTI-----PLEVISNFSKLRVLRLFGTVL--------A 479 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~l~~l-----P~~~i~~L~~L~~L~l~~~~~--------~ 479 (680)
+|++|+|++| .+. .+|..+..+++|++|++++| .+... .......+.+|++|++++|.. .
T Consensus 86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 4666666664 444 34556666666666666666 34422 111112244566666666541 2
Q ss_pred hhhcCCCCCceeEEEeccchh--hhhhhhc-hhhhccccEEEEeccCCCCccc----ccccccCCCCCEEEEeccCCcce
Q 041114 480 KELLGLKHLEELDFTLRCVHS--LQILVSS-NKLQSCTRALVLIRFKDSKSID----VIALARLKHLSTLHFSKCEELEE 552 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~--l~~l~~~-~~l~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~l~~ 552 (680)
..+..+++|+.|++..+.... ...+... ....++|+.|++++|. +.... ...+..+++|++|+++++. +..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~ 241 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGD 241 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CCh
Confidence 233445666666665433221 1111110 0112367777777764 32211 1245567788888887653 332
Q ss_pred eecccCCCCccCCCCCCCCCCccEEeeeCCCCCCC-----CC-CcCCCCCCCEEeEecCcchhHhhh----cCCCCCCCc
Q 041114 553 WKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKG-----LT-FLVFAPNLKCLSLFDCTAMEEIIS----AGKFVHTPE 622 (680)
Q Consensus 553 l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~l~~c~~l~~i~~----~~~~~~lp~ 622 (680)
.....+. +.....+++|++|++++|. ++. ++ .+..+++|++|+++++. +..... .......++
T Consensus 242 ~~~~~l~-----~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 242 VGMAELC-----PGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp HHHHHHH-----HHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHH-----HHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCcc
Confidence 2111100 0000246788888888874 443 22 34568889999998864 433211 111123478
Q ss_pred ccccCccccc
Q 041114 623 MMGNTMDPCA 632 (680)
Q Consensus 623 L~~L~i~~C~ 632 (680)
|+.|++++|.
T Consensus 315 L~~L~L~~n~ 324 (461)
T 1z7x_W 315 LESLWVKSCS 324 (461)
T ss_dssp CCEEECTTSC
T ss_pred ceeeEcCCCC
Confidence 8999988886
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=6.9e-10 Score=107.83 Aligned_cols=68 Identities=13% Similarity=0.287 Sum_probs=36.1
Q ss_pred cccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC
Q 041114 404 EFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 404 ~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 476 (680)
.+..+|..+ .++|+.|+|++ +.+..+|. .+..+++|++|+|++| .+..++++.+..+++|++|++++|
T Consensus 22 ~l~~iP~~l---~~~l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 22 GLTEIPTNL---PETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp CCSSCCSSC---CTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CcCcCCCcc---CcCCCEEECCC-CcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 344555432 14556666666 35555553 4555666666666665 455553323555555655555554
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.05 E-value=6.2e-10 Score=108.93 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=88.7
Q ss_pred ceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEeccc
Q 041114 419 LKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 419 Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~ 498 (680)
.+.++.++ ..+..+|.++. ++|++|+|++| .+..++...++.+++|++|++++|.. ..+.
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~--------------- 80 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQL-GALP--------------- 80 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCC---------------
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCC-CCcC---------------
Confidence 45677776 57777776554 67778888777 67776444477777777777777641 1000
Q ss_pred hhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEe
Q 041114 499 HSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVT 578 (680)
Q Consensus 499 ~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~ 578 (680)
+.....+++|+.|+++++. +..++...+..+++|+.|+++++ .+..++.. +..+++|+.|+
T Consensus 81 ------~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-----------~~~l~~L~~L~ 141 (229)
T 3e6j_A 81 ------VGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-----------IERLTHLTHLA 141 (229)
T ss_dssp ------TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-----------GGGCTTCSEEE
T ss_pred ------hhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCC-cccccCcc-----------cccCCCCCEEE
Confidence 0001112356666666654 44444335667777888887764 34443221 24667778888
Q ss_pred eeCCCCCCCCC--CcCCCCCCCEEeEecCc
Q 041114 579 ITFCPKLKGLT--FLVFAPNLKCLSLFDCT 606 (680)
Q Consensus 579 L~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 606 (680)
|+++. +..++ .+..+++|+.|++++++
T Consensus 142 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 142 LDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 87754 45554 25667777777777643
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.05 E-value=8.1e-11 Score=135.03 Aligned_cols=143 Identities=18% Similarity=0.130 Sum_probs=83.1
Q ss_pred cceEEEEeecccccccccC-CCCccc-----------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCC
Q 041114 377 ETVRRLSLMQNQIKILSEA-PTCPHL-----------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLK 444 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~-~~~~~L-----------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr 444 (680)
..++++++.++.+...+.. .....| ++.+. +++..|..+.+|++|+|++| .+..+|..+..|++|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 4678888877777664332 122222 23333 55556889999999999994 8889999999999999
Q ss_pred EEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCC
Q 041114 445 CVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKD 524 (680)
Q Consensus 445 ~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~ 524 (680)
+|+|++| .+..+|.+ |++|.+|++|++++|..- . ++.....+++|+.|+|+++.
T Consensus 251 ~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N~l~-~----------------------lp~~~~~l~~L~~L~L~~N~- 304 (727)
T 4b8c_D 251 RLYLNGN-SLTELPAE-IKNLSNLRVLDLSHNRLT-S----------------------LPAELGSCFQLKYFYFFDNM- 304 (727)
T ss_dssp CCBCTTS-CCSCCCGG-GGGGTTCCEEECTTSCCS-S----------------------CCSSGGGGTTCSEEECCSSC-
T ss_pred EEEeeCC-cCcccChh-hhCCCCCCEEeCcCCcCC-c----------------------cChhhcCCCCCCEEECCCCC-
Confidence 9999999 79999987 999999999999987411 1 11111223467777777764
Q ss_pred CCcccccccccCCCCCEEEEeccC
Q 041114 525 SKSIDVIALARLKHLSTLHFSKCE 548 (680)
Q Consensus 525 ~~~~~~~~l~~l~~L~~L~l~~~~ 548 (680)
+..+|. .+..+++|+.|+|+++.
T Consensus 305 l~~lp~-~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 305 VTTLPW-EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCCCCS-STTSCTTCCCEECTTSC
T ss_pred CCccCh-hhhcCCCccEEeCCCCc
Confidence 556664 58888888888888754
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=7.7e-10 Score=107.49 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=71.4
Q ss_pred cceEEEccCCCCccccc--hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCcee
Q 041114 418 LLKVLNMSRETNIKELL--GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEEL 491 (680)
Q Consensus 418 ~Lr~LdL~~~~~i~~lP--~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L 491 (680)
.+++|+|++ +.+..+| ..++.+++|++|+|++| .++.+|.+.++.+++|++|++++|.. ...+..+
T Consensus 33 ~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 104 (220)
T 2v70_A 33 YTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL------ 104 (220)
T ss_dssp TCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC------
T ss_pred CCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC------
Confidence 456777777 3666663 23667777777777777 56666654466777777777766531 0112222
Q ss_pred EEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCC
Q 041114 492 DFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVF 571 (680)
Q Consensus 492 ~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l 571 (680)
++|+.|+++++. +...+...+..+++|+.|+++++ .+..+.+..+ ..+
T Consensus 105 --------------------~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l 152 (220)
T 2v70_A 105 --------------------ESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAF----------DTL 152 (220)
T ss_dssp --------------------SSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTT----------TTC
T ss_pred --------------------cCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHh----------cCC
Confidence 244444554443 22232235666777777777653 4444433333 456
Q ss_pred CCccEEeeeCCC
Q 041114 572 CSLHKVTITFCP 583 (680)
Q Consensus 572 ~~L~~L~L~~c~ 583 (680)
++|+.|+|++++
T Consensus 153 ~~L~~L~L~~N~ 164 (220)
T 2v70_A 153 HSLSTLNLLANP 164 (220)
T ss_dssp TTCCEEECCSCC
T ss_pred CCCCEEEecCcC
Confidence 777777777765
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=2.2e-10 Score=128.97 Aligned_cols=235 Identities=13% Similarity=0.065 Sum_probs=115.7
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCC-------------------Ccc-----------ccchhhh
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWAR-------------------DLV-----------TIPLEVI 462 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~-------------------~l~-----------~lP~~~i 462 (680)
+..+++|++|++++|..+..+|..+..+++|++|++..+. +++ .+|.- +
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~-~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV-Y 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG-H
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH-H
Confidence 3456888888888876666677777777777777654431 111 22321 3
Q ss_pred cCCCCCcEeeccCCcc----hh-hhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEecc--------CCCCccc
Q 041114 463 SNFSKLRVLRLFGTVL----AK-ELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRF--------KDSKSID 529 (680)
Q Consensus 463 ~~L~~L~~L~l~~~~~----~~-~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~--------~~~~~~~ 529 (680)
..+++|++|++++|.. +. -+.++++|+.|.+..+ .....+......+++|+.|++.++ ..+....
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3567777888877761 11 1456777777777632 222223333333456777777432 2222111
Q ss_pred cccc-ccCCCCCEEEEeccCCcceeecccCCC------------------CccC--CC------CCCCCCCccEEeeeCC
Q 041114 530 VIAL-ARLKHLSTLHFSKCEELEEWKTDYTSG------------------TVLK--SP------QPFVFCSLHKVTITFC 582 (680)
Q Consensus 530 ~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~------------------~~l~--~~------~~~~l~~L~~L~L~~c 582 (680)
...+ ..+++|+.|.+. |+.+.......+.. ..+. +. -...+++|+.|+|++
T Consensus 364 l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 1111 124555555443 22222111111100 0000 00 002334555555543
Q ss_pred CCCCC--CCCcCC-CCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCC--CCc--cccCcceEEeccc
Q 041114 583 PKLKG--LTFLVF-APNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPL--DSN--SALEHKIAIRGEA 655 (680)
Q Consensus 583 ~~l~~--l~~l~~-l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~--~~~--~~l~~L~i~~~~~ 655 (680)
.+.. ++.++. +++|+.|++++|..-...+. .....+|+|+.|++++|+- ...+. ... ..|+.|.+.+|..
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1111 111222 77788888887653222211 1124489999999988874 22111 111 1477888888864
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=4.1e-11 Score=134.87 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=19.2
Q ss_pred CCCCccEEeeeCCCCCCCC--C-CcCCCCCCCEEeEecC
Q 041114 570 VFCSLHKVTITFCPKLKGL--T-FLVFAPNLKCLSLFDC 605 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~l~~l--~-~l~~l~~L~~L~l~~c 605 (680)
.+++|++|+|++|. +... + .+..+++|++|++++|
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 34666666666665 3221 1 1345666666666665
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.01 E-value=5.4e-10 Score=117.41 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=102.7
Q ss_pred cccchhhhccCCcceEEEccCCCCccccchh-hh-ccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcch----
Q 041114 406 KMITDGFFQFMPLLKVLNMSRETNIKELLGE-LK-ALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLA---- 479 (680)
Q Consensus 406 ~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~-~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~---- 479 (680)
..+|..+ ...+++|+|++ +.+..+|.. +. .+++|++|+|++| .+..+|.+.+..+.+|++|++++|..-
T Consensus 31 ~~iP~~~---~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 31 PNVPQSL---PSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp SSCCSSC---CTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccCccC---CCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 3555542 24589999999 589888865 55 8999999999999 799998766899999999999987511
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCC
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTS 559 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 559 (680)
..+..++ +|+.|+++++. +..++...+..+++|+.|+++++ .+..++...+.
T Consensus 106 ~~~~~l~--------------------------~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 157 (361)
T 2xot_A 106 FLFSDLQ--------------------------ALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIK 157 (361)
T ss_dssp TTTTTCT--------------------------TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC
T ss_pred HHhCCCc--------------------------CCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhc
Confidence 1223333 55556665554 33333236677777777777764 44444433321
Q ss_pred CCccCCCCCCCCCCccEEeeeCCCCCCCCCC--cCCCCC--CCEEeEecC
Q 041114 560 GTVLKSPQPFVFCSLHKVTITFCPKLKGLTF--LVFAPN--LKCLSLFDC 605 (680)
Q Consensus 560 ~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~--L~~L~l~~c 605 (680)
. ...+++|+.|+|+++. ++.+|. +..++. |+.|+++++
T Consensus 158 ~-------~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 158 D-------GNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp -----------CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred C-------cccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence 0 0246777788887754 555552 455665 366777663
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=1.3e-10 Score=126.56 Aligned_cols=245 Identities=16% Similarity=0.148 Sum_probs=147.9
Q ss_pred cccceEEEEeecccccccc-----cC-C----CCccc---ccccc-----ccchhhhccCCcceEEEccCCCCcccc-ch
Q 041114 375 EWETVRRLSLMQNQIKILS-----EA-P----TCPHL---HYEFK-----MITDGFFQFMPLLKVLNMSRETNIKEL-LG 435 (680)
Q Consensus 375 ~~~~~r~lsl~~~~~~~l~-----~~-~----~~~~L---~~~l~-----~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~ 435 (680)
..++++++.+.+|.+.... .. . ....| ++.+. .+|. .+..+++|++|+|++| .+... +.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~ 131 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDN-LLGDAGLQ 131 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSS-BCHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCC-cCchHHHH
Confidence 3468899999888775421 11 1 13333 44444 3344 3788999999999995 56432 33
Q ss_pred hhh-----ccCCCCEEeccCCCCccc-----cchhhhcCCCCCcEeeccCCcc----hhhhc-----CCCCCceeEEEec
Q 041114 436 ELK-----ALVNLKCVNLEWARDLVT-----IPLEVISNFSKLRVLRLFGTVL----AKELL-----GLKHLEELDFTLR 496 (680)
Q Consensus 436 ~i~-----~L~~Lr~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~----~~~l~-----~L~~L~~L~i~~~ 496 (680)
.+. .+.+|++|++++| .+.. ++.. +..+++|++|++++|.. +..+. .+++|+.|++..+
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred HHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 333 2567999999998 6765 4553 77889999999998762 22222 3568888888755
Q ss_pred cchh--hhhhhhchhhhccccEEEEeccCCCCcccc-----cccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCC
Q 041114 497 CVHS--LQILVSSNKLQSCTRALVLIRFKDSKSIDV-----IALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPF 569 (680)
Q Consensus 497 ~~~~--l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~-----~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 569 (680)
.... ...++......++|+.|+++++. +..... .....+++|++|++++| .+.......+. ..+.
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~------~~l~ 281 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLC------RVLR 281 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH------HHHH
T ss_pred CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHH------HHHh
Confidence 4432 22344444445689999998875 333211 12235789999999887 44432111110 0013
Q ss_pred CCCCccEEeeeCCCCCCCCC--Cc-----CCCCCCCEEeEecCcchhH----hhhcCCCCCCCcccccCccccccCC
Q 041114 570 VFCSLHKVTITFCPKLKGLT--FL-----VFAPNLKCLSLFDCTAMEE----IISAGKFVHTPEMMGNTMDPCAKLR 635 (680)
Q Consensus 570 ~l~~L~~L~L~~c~~l~~l~--~l-----~~l~~L~~L~l~~c~~l~~----i~~~~~~~~lp~L~~L~i~~C~~L~ 635 (680)
.+++|++|++++|. +.... .+ ...++|++|++++|..-.. ++. .+..+++|+.|++++|. +.
T Consensus 282 ~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~-i~ 354 (461)
T 1z7x_W 282 AKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS--VLAQNRFLLELQISNNR-LE 354 (461)
T ss_dssp HCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH--HHHHCSSCCEEECCSSB-CH
T ss_pred hCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH--HHhhCCCccEEEccCCc-cc
Confidence 46889999999875 32211 11 2347999999998763221 221 12457889999988873 44
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=6.4e-09 Score=107.67 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=73.2
Q ss_pred ccceEEEEeecccccccccC-CCCcc--c-cccccccchhhhcc--------CCcceEEEccCCCCccccc-hhhhccCC
Q 041114 376 WETVRRLSLMQNQIKILSEA-PTCPH--L-HYEFKMITDGFFQF--------MPLLKVLNMSRETNIKELL-GELKALVN 442 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~-~~~~~--L-~~~l~~lp~~~~~~--------l~~Lr~LdL~~~~~i~~lP-~~i~~L~~ 442 (680)
..+++.|.+++|.+...... ..++. + ......+|+..|.+ +.+|+.|+|+. .++.++ ..+..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 46799999999998722111 12222 1 22333788888999 99999999997 788888 45899999
Q ss_pred CCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 443 LKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 443 Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
|+.|++.++ .+..++...+....++..+....
T Consensus 126 L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 126 LKICQIRKK-TAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CCEEEBCCS-SCCEECTTSSCTTTCEEEECTTC
T ss_pred cceEEcCCC-CccccchhhhcCCCceEEecCcc
Confidence 999999999 78899988788888888877665
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.92 E-value=4.9e-09 Score=101.80 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=79.5
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch-hhh
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELK 438 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~ 438 (680)
+...+..+..+|... ...+++|.+.+|.+..++ |.++|..+++|++|+|++ +.+..+|. .++
T Consensus 16 l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~---------------~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~ 78 (220)
T 2v70_A 16 VDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLE---------------ATGIFKKLPQLRKINFSN-NKITDIEEGAFE 78 (220)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC---------------CCCCGGGCTTCCEEECCS-SCCCEECTTTTT
T ss_pred eEeCCCCcccCccCC-CCCCCEEEcCCCcCCccC---------------chhhhccCCCCCEEECCC-CcCCEECHHHhC
Confidence 444444455555321 235566777766665442 223356666666666666 35666553 566
Q ss_pred ccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEeccchhhhhhhhchhhhccc
Q 041114 439 ALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCT 514 (680)
Q Consensus 439 ~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L 514 (680)
.+++|++|+|++| .+..+|.+.++.+++|++|++++|. .+..+..+++|+.|++..+....+. +.....+++|
T Consensus 79 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L 155 (220)
T 2v70_A 79 GASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSL 155 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTC
T ss_pred CCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCC
Confidence 6666666666666 5666665556666666666666654 1344556666666666543332221 1222233466
Q ss_pred cEEEEeccC
Q 041114 515 RALVLIRFK 523 (680)
Q Consensus 515 ~~L~l~~~~ 523 (680)
+.|+++++.
T Consensus 156 ~~L~L~~N~ 164 (220)
T 2v70_A 156 STLNLLANP 164 (220)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCcC
Confidence 666666654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=2.4e-09 Score=99.16 Aligned_cols=132 Identities=18% Similarity=0.166 Sum_probs=90.5
Q ss_pred cCCcceEEEccCCCCcc--ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeE
Q 041114 415 FMPLLKVLNMSRETNIK--ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELD 492 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~ 492 (680)
..++|++|++++| .+. .+|..++.+++|++|++++| .++.+ .. ++.+++|++|++++|..-..
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~----------- 86 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SN-LPKLPKLKKLELSENRIFGG----------- 86 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SS-CCCCSSCCEEEEESCCCCSC-----------
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hh-hccCCCCCEEECcCCcCchH-----------
Confidence 3578999999995 777 88988899999999999999 68888 43 88999999999988742110
Q ss_pred EEeccchhhhhhhhchhhhccccEEEEeccCCCCcccc-cccccCCCCCEEEEeccCCcceeec---ccCCCCccCCCCC
Q 041114 493 FTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDV-IALARLKHLSTLHFSKCEELEEWKT---DYTSGTVLKSPQP 568 (680)
Q Consensus 493 i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~l~~~~~ 568 (680)
++.....+++|+.|+++++. +..++. ..+..+++|+.|+++++. +..++. ..+
T Consensus 87 -----------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~---------- 143 (168)
T 2ell_A 87 -----------LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVF---------- 143 (168)
T ss_dssp -----------CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHH----------
T ss_pred -----------HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHH----------
Confidence 11111223466777777664 444331 367778888888888753 333322 122
Q ss_pred CCCCCccEEeeeCCCC
Q 041114 569 FVFCSLHKVTITFCPK 584 (680)
Q Consensus 569 ~~l~~L~~L~L~~c~~ 584 (680)
..+++|++|++++|..
T Consensus 144 ~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 144 KLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCSSCCEETTEETTS
T ss_pred HhCccCcEecCCCCCh
Confidence 4678888888888764
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=2.9e-09 Score=96.39 Aligned_cols=128 Identities=18% Similarity=0.184 Sum_probs=82.5
Q ss_pred cCCcceEEEccCCCCcc--ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeE
Q 041114 415 FMPLLKVLNMSRETNIK--ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELD 492 (680)
Q Consensus 415 ~l~~Lr~LdL~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~ 492 (680)
..++|+.|++++| .+. .+|..++.+++|++|++++| .+..+ .. ++.+++|++|++++|..-..
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~Ls~n~i~~~----------- 79 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI-AN-LPKLNKLKKLELSDNRVSGG----------- 79 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TT-CCCCTTCCEEECCSSCCCSC-----------
T ss_pred CCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hh-hhcCCCCCEEECCCCcccch-----------
Confidence 3577899999995 776 78888889999999999998 78888 33 88899999999988742110
Q ss_pred EEeccchhhhhhhhchhhhccccEEEEeccCCCCccc-ccccccCCCCCEEEEeccCCcceeec---ccCCCCccCCCCC
Q 041114 493 FTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSID-VIALARLKHLSTLHFSKCEELEEWKT---DYTSGTVLKSPQP 568 (680)
Q Consensus 493 i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~l~~l~~---~~~~~~~l~~~~~ 568 (680)
++.....+++|+.|+++++. +...+ ...+..+++|+.|+++++ .+..++. ..+
T Consensus 80 -----------~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~---------- 136 (149)
T 2je0_A 80 -----------LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVF---------- 136 (149)
T ss_dssp -----------THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHH----------
T ss_pred -----------HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHH----------
Confidence 11111223356666666654 33322 135667777777777765 3333322 112
Q ss_pred CCCCCccEEeee
Q 041114 569 FVFCSLHKVTIT 580 (680)
Q Consensus 569 ~~l~~L~~L~L~ 580 (680)
..+++|+.|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (149)
T 2je0_A 137 KLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEETTB
T ss_pred HHCCCcccccCC
Confidence 456777777665
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.79 E-value=1.1e-08 Score=94.48 Aligned_cols=128 Identities=21% Similarity=0.113 Sum_probs=74.2
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT 456 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~ 456 (680)
+++++|.+.++.+..- .+|.. +..+++|++|++++| .+..+ ..++.+++|++|++++| .+..
T Consensus 24 ~~L~~L~l~~n~l~~~--------------~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N-~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDG--------------KIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSEN-RIFG 85 (168)
T ss_dssp TSCSEEECCSCBCBTT--------------BCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESC-CCCS
T ss_pred ccCCEEECCCCCCChh--------------hHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCC-cCch
Confidence 5788888888776510 23332 455666677777663 56555 55666666777777666 4655
Q ss_pred -cchhhhcCCCCCcEeeccCCc-----chhhhcCCCCCceeEEEeccchhhhhhh-hchhhhccccEEEEeccC
Q 041114 457 -IPLEVISNFSKLRVLRLFGTV-----LAKELLGLKHLEELDFTLRCVHSLQILV-SSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 457 -lP~~~i~~L~~L~~L~l~~~~-----~~~~l~~L~~L~~L~i~~~~~~~l~~l~-~~~~l~~~L~~L~l~~~~ 523 (680)
+|.. ++++++|++|++++|. .+..+..+++|+.|++..+....+.... .....+++|+.|++.++.
T Consensus 86 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 86 GLDML-AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CCCHH-HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHHH-HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4442 5556677777766654 1145556666666666644333222110 122334577777777765
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.77 E-value=1.8e-08 Score=95.46 Aligned_cols=119 Identities=22% Similarity=0.374 Sum_probs=80.0
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccch-hhhccCCcceEEEccCCCCcccc-chhh
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITD-GFFQFMPLLKVLNMSRETNIKEL-LGEL 437 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~-~~~~~l~~Lr~LdL~~~~~i~~l-P~~i 437 (680)
+...+..+..+|... ..++++|.+.+|.+. .+++ .+|..+++|++|+|++| .+..+ |..+
T Consensus 13 l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~----------------~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 74 (192)
T 1w8a_A 13 VDCTGRGLKEIPRDI-PLHTTELLLNDNELG----------------RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF 74 (192)
T ss_dssp EECTTSCCSSCCSCC-CTTCSEEECCSCCCC----------------SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT
T ss_pred EEcCCCCcCcCccCC-CCCCCEEECCCCcCC----------------ccCCccccccCCCCCEEECCCC-CCCCcCHhHc
Confidence 344444555555322 136666666666554 3343 24778888888888884 77766 5778
Q ss_pred hccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc----chhhhcCCCCCceeEEEecc
Q 041114 438 KALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV----LAKELLGLKHLEELDFTLRC 497 (680)
Q Consensus 438 ~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~----~~~~l~~L~~L~~L~i~~~~ 497 (680)
+.+++|++|+|++| .++.+|...++.+++|++|+++++. .+..+..+++|+.|++..+.
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 75 EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88888888888888 6888877657888888888888875 23455666777777665443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.77 E-value=1e-08 Score=95.71 Aligned_cols=128 Identities=19% Similarity=0.147 Sum_probs=67.1
Q ss_pred ccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCcc
Q 041114 376 WETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLV 455 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~ 455 (680)
..+++++.+.+|.+..++.. ....++|++|+|++| .+..+ ..++.+++|++|++++| .+.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~-----------------~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~ 77 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENL-----------------GATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RIC 77 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCG-----------------GGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCC
T ss_pred cCCceEEEeeCCCCchhHHh-----------------hhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-ccc
Confidence 36788899988887754321 122235666666663 55555 35556666666666666 466
Q ss_pred ccchhhhcCCCCCcEeeccCCcc---h--hhhcCCCCCceeEEEeccchhhhhh-hhchhhhccccEEEEeccC
Q 041114 456 TIPLEVISNFSKLRVLRLFGTVL---A--KELLGLKHLEELDFTLRCVHSLQIL-VSSNKLQSCTRALVLIRFK 523 (680)
Q Consensus 456 ~lP~~~i~~L~~L~~L~l~~~~~---~--~~l~~L~~L~~L~i~~~~~~~l~~l-~~~~~l~~~L~~L~l~~~~ 523 (680)
.+|++.++.+++|++|++++|.. + ..+..+++|+.|++..+....+... ......+++|+.|+++++.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66554235566666666665531 1 1445555566665553333222110 0012233456666665553
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.76 E-value=1.7e-08 Score=95.74 Aligned_cols=102 Identities=23% Similarity=0.196 Sum_probs=67.2
Q ss_pred CcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcc----hhhhcCCCCCceeE
Q 041114 417 PLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVL----AKELLGLKHLEELD 492 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~----~~~l~~L~~L~~L~ 492 (680)
++|++|+|++ +.+..+|..++.+++|++|+|++| .++.+|.+.+..|++|++|+++++.. +..+..++
T Consensus 31 ~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~------ 102 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK------ 102 (193)
T ss_dssp TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT------
T ss_pred CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC------
Confidence 4678888888 477788877888888888888888 67777765577888888888877641 11122222
Q ss_pred EEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEecc
Q 041114 493 FTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKC 547 (680)
Q Consensus 493 i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 547 (680)
+|+.|+++++. +..++...+..+++|+.|+++++
T Consensus 103 --------------------~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 103 --------------------SLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp --------------------TCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CCCEEECCCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 45555555544 33444335666777777777653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.76 E-value=2.9e-08 Score=94.11 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=88.8
Q ss_pred EEEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccc-hhh
Q 041114 359 FLVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GEL 437 (680)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i 437 (680)
.+...+..+..+|... ..+++.|.+.+|.+. .+|.. |..+++|++|+|++ +.+..+| ..+
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~----------------~ip~~-~~~l~~L~~L~Ls~-N~i~~i~~~~f 74 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT----------------LVPKE-LSNYKHLTLIDLSN-NRISTLSNQSF 74 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCC----------------SCCGG-GGGCTTCCEEECCS-SCCCCCCTTTT
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc----------------hhHHH-hhcccCCCEEECCC-CcCCEeCHhHc
Confidence 3445555556665422 256777777777665 45643 78899999999999 4888877 458
Q ss_pred hccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---ch-hhhcCCCCCceeEEEeccc
Q 041114 438 KALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LA-KELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 438 ~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~-~~l~~L~~L~~L~i~~~~~ 498 (680)
..|++|++|+|++| .++.+|...++.+++|++|++++|. .+ ..+..+++|+.|++..+..
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 75 SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 89999999999999 7888887668899999999999876 22 2467788888888875543
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=1.3e-08 Score=92.02 Aligned_cols=125 Identities=19% Similarity=0.108 Sum_probs=74.4
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVT 456 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~ 456 (680)
.+++++.+.++.+..- .+|.. +..+++|++|++++| .+..+ ..++.+++|++|++++| .+..
T Consensus 17 ~~l~~L~l~~n~l~~~--------------~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~ 78 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG--------------KLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSG 78 (149)
T ss_dssp GGCSEEECTTCBCBTT--------------BCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCS
T ss_pred ccCeEEEccCCcCChh--------------HHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccc
Confidence 5788888888877510 23332 566677777777774 66666 56677777777777777 5666
Q ss_pred -cchhhhcCCCCCcEeeccCCc--c---hhhhcCCCCCceeEEEeccchhhhhhh-hchhhhccccEEEEe
Q 041114 457 -IPLEVISNFSKLRVLRLFGTV--L---AKELLGLKHLEELDFTLRCVHSLQILV-SSNKLQSCTRALVLI 520 (680)
Q Consensus 457 -lP~~~i~~L~~L~~L~l~~~~--~---~~~l~~L~~L~~L~i~~~~~~~l~~l~-~~~~l~~~L~~L~l~ 520 (680)
+|.. ++.+++|++|++++|. . +..+..+++|+.|++..+......... .....+++|+.|+++
T Consensus 79 ~~~~~-~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 79 GLEVL-AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTHHH-HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hHHHH-hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5553 5667777777777664 1 245666677777776644333222110 122334466666543
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.74 E-value=1.5e-08 Score=112.66 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=50.3
Q ss_pred hccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---c--hhhhcCCCC
Q 041114 413 FQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---L--AKELLGLKH 487 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~--~~~l~~L~~ 487 (680)
|..+++|++|+|++ +.+..+|..++.|++|++|+|++| .++.+| + +++|++|++|++++|. . +..+.+|++
T Consensus 459 ~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 459 LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 56667777777777 366677777777777777777776 566666 3 6777777777776654 1 344555555
Q ss_pred CceeEEE
Q 041114 488 LEELDFT 494 (680)
Q Consensus 488 L~~L~i~ 494 (680)
|+.|+++
T Consensus 535 L~~L~L~ 541 (567)
T 1dce_A 535 LVLLNLQ 541 (567)
T ss_dssp CCEEECT
T ss_pred CCEEEec
Confidence 5555554
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=1.8e-08 Score=93.99 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=90.0
Q ss_pred cEEEecCCCccccccccccc-ceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchh
Q 041114 358 NFLVCAGRGLKEAPEVKEWE-TVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGE 436 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~-~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~ 436 (680)
..+...+..+..++...... +++++.+.+|.+..+ + .|..+++|++|+|++ +.+..+|..
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~----------------~--~l~~l~~L~~L~Ls~-N~l~~~~~~ 82 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL----------------D--GFPLLRRLKTLLVNN-NRICRIGEG 82 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE----------------C--CCCCCSSCCEEECCS-SCCCEECSC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc----------------c--ccccCCCCCEEECCC-CcccccCcc
Confidence 34555566666666555555 899999999987643 1 167788999999999 488888866
Q ss_pred h-hccCCCCEEeccCCCCccccch--hhhcCCCCCcEeeccCCcc---hh----hhcCCCCCceeEEEecc
Q 041114 437 L-KALVNLKCVNLEWARDLVTIPL--EVISNFSKLRVLRLFGTVL---AK----ELLGLKHLEELDFTLRC 497 (680)
Q Consensus 437 i-~~L~~Lr~L~L~~~~~l~~lP~--~~i~~L~~L~~L~l~~~~~---~~----~l~~L~~L~~L~i~~~~ 497 (680)
+ +.+++|++|++++| .++.+|. . ++.+++|++|++++|.. +. .+..+++|+.|++..+.
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5 89999999999999 7888886 5 88899999999998762 22 26778888888877544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.71 E-value=6.7e-10 Score=105.99 Aligned_cols=110 Identities=19% Similarity=0.127 Sum_probs=74.5
Q ss_pred cccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc--chhhhc
Q 041114 406 KMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV--LAKELL 483 (680)
Q Consensus 406 ~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~--~~~~l~ 483 (680)
+.+|.. |..+++|++|+|++| .+..+| .++.+++|++|++++| .+..+|.. ++.+++|++|++++|. .+..+.
T Consensus 38 ~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~~~~ 112 (198)
T 1ds9_A 38 EKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYNQIASLSGIE 112 (198)
T ss_dssp CCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEEECCCHHHHH
T ss_pred hhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCCcCCcCCccc
Confidence 355654 788888999999884 788888 8888899999999888 68888874 7777888888887763 112222
Q ss_pred CCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccc-cccccCCCCCEEEEecc
Q 041114 484 GLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDV-IALARLKHLSTLHFSKC 547 (680)
Q Consensus 484 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 547 (680)
.++ +|+.|+++++. +...+. ..+..+++|+.|+++++
T Consensus 113 ~l~--------------------------~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 KLV--------------------------NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHH--------------------------HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCC--------------------------CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 333 56666666554 232221 24566667777777654
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.69 E-value=4.9e-08 Score=92.45 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=22.0
Q ss_pred ccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCC
Q 041114 532 ALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCP 583 (680)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~ 583 (680)
.+..+++|+.|+++++ .+..+.+..+ ..+++|++|+|++++
T Consensus 97 ~~~~l~~L~~L~L~~N-~l~~~~~~~~----------~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDN-QISCVMPGSF----------EHLNSLTSLNLASNP 137 (192)
T ss_dssp SSTTCTTCCEEECCSS-CCCEECTTSS----------TTCTTCCEEECTTCC
T ss_pred HhcCCCCCCEEECCCC-cCCeeCHHHh----------hcCCCCCEEEeCCCC
Confidence 3555666666666653 3443333222 455666666666654
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=4.7e-08 Score=90.92 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=43.4
Q ss_pred ccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.+++..|.++++|++|+|++ +.+..+|.. ++.+++|++|+|++| .++.+|.+.++.+++|++|++++|.
T Consensus 47 ~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 47 KLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 44444466666677777776 366666654 466666777777666 5666666546666666666666653
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=4.6e-08 Score=91.21 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=77.0
Q ss_pred EEecCCCcccccccccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchh-hh
Q 041114 360 LVCAGRGLKEAPEVKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGE-LK 438 (680)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~ 438 (680)
+...+.++..+|.. ...++++|.+.+|.+. .+|+..|..+++|++|++++ +.+..+|.. ++
T Consensus 12 l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~----------------~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~ 73 (177)
T 2o6r_A 12 IRCNSKGLTSVPTG-IPSSATRLELESNKLQ----------------SLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFD 73 (177)
T ss_dssp EECCSSCCSSCCTT-CCTTCSEEECCSSCCC----------------CCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT
T ss_pred EEecCCCCccCCCC-CCCCCcEEEeCCCccc----------------EeCHHHhcCcccccEEECCC-CcceEeChhHcc
Confidence 33344444444422 2246666666666554 45555577788888888888 477777744 57
Q ss_pred ccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---chh-hhcCCCCCceeEEEecc
Q 041114 439 ALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LAK-ELLGLKHLEELDFTLRC 497 (680)
Q Consensus 439 ~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~-~l~~L~~L~~L~i~~~~ 497 (680)
.+++|++|++++| .++.+|...++.+++|++|+++++. .+. .+..+++|+.|++..+.
T Consensus 74 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 KLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 8888888888888 6888877656778888888888764 112 23556666666665443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.68 E-value=1.6e-09 Score=103.42 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=104.4
Q ss_pred cceEEEccCC-CCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEec
Q 041114 418 LLKVLNMSRE-TNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLR 496 (680)
Q Consensus 418 ~Lr~LdL~~~-~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~ 496 (680)
.|+.+++.++ ..++.+|..++.+++|++|++++| .+..+| . ++++++|++|++++|.. .
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~-~~~l~~L~~L~l~~n~l----~------------- 83 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-S-LSGMENLRILSLGRNLI----K------------- 83 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-C-HHHHTTCCEEEEEEEEE----C-------------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-c-cccCCCCCEEECCCCCc----c-------------
Confidence 3455555542 356778889999999999999999 799999 5 89999999999987631 1
Q ss_pred cchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeec-ccCCCCccCCCCCCCCCCcc
Q 041114 497 CVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKT-DYTSGTVLKSPQPFVFCSLH 575 (680)
Q Consensus 497 ~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~l~~~~~~~l~~L~ 575 (680)
.++.....+++|+.|+++++. +..++ .+..+++|+.|+++++ .+..++. ..+ ..+++|+
T Consensus 84 ------~l~~~~~~~~~L~~L~L~~N~-l~~l~--~~~~l~~L~~L~l~~N-~i~~~~~~~~l----------~~l~~L~ 143 (198)
T 1ds9_A 84 ------KIENLDAVADTLEELWISYNQ-IASLS--GIEKLVNLRVLYMSNN-KITNWGEIDKL----------AALDKLE 143 (198)
T ss_dssp ------SCSSHHHHHHHCSEEEEEEEE-CCCHH--HHHHHHHSSEEEESEE-ECCCHHHHHHH----------TTTTTCS
T ss_pred ------cccchhhcCCcCCEEECcCCc-CCcCC--ccccCCCCCEEECCCC-cCCchhHHHHH----------hcCCCCC
Confidence 112222334588999999885 55554 6888999999999985 3443322 223 5689999
Q ss_pred EEeeeCCCCCCCCCC-----------cCCCCCCCEEe
Q 041114 576 KVTITFCPKLKGLTF-----------LVFAPNLKCLS 601 (680)
Q Consensus 576 ~L~L~~c~~l~~l~~-----------l~~l~~L~~L~ 601 (680)
+|++++|+....+|. +..+|+|+.|+
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999874333332 67999999997
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.67 E-value=7.5e-08 Score=89.80 Aligned_cols=102 Identities=24% Similarity=0.387 Sum_probs=82.3
Q ss_pred cEEEecCCCcccccc--cccccceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccch
Q 041114 358 NFLVCAGRGLKEAPE--VKEWETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLG 435 (680)
Q Consensus 358 ~~~~~~~~~~~~~~~--~~~~~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~ 435 (680)
..+...+..+..++. .....++++|.+.+|.+. .+|+..|..+++|++|+|++ +.+..+|.
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------~~~~~~~~~l~~L~~L~l~~-N~l~~~~~ 93 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------------SLPDGVFDKLTKLTILYLHE-NKLQSLPN 93 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----------------CCCTTTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcce----------------EeChhHccCCCccCEEECCC-CCccccCH
Confidence 445555555555553 245678999999888775 45666688999999999999 58988886
Q ss_pred h-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 436 E-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 436 ~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
. ++.+++|++|++++| .++.+|.+.+..+++|++|++++|.
T Consensus 94 ~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 5 689999999999999 7999999756889999999999885
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=8.9e-08 Score=88.70 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=42.1
Q ss_pred ccchhhhccCCcceEEEccCCCCccccchh-hhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 476 (680)
.+++..|.++++|++|+|++ +.+..+|.. +..+++|++|+|++| .++.+|.+.+..+++|++|+++++
T Consensus 44 ~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 44 KLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 44444466666666666666 366666644 456666666666666 566666544666666666666665
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=1.2e-07 Score=98.13 Aligned_cols=214 Identities=16% Similarity=0.078 Sum_probs=118.8
Q ss_pred CCcceEEEccCCCCcc--------------------ccc-hhhhc--------cCCCCEEeccCCCCccccchhhhcCCC
Q 041114 416 MPLLKVLNMSRETNIK--------------------ELL-GELKA--------LVNLKCVNLEWARDLVTIPLEVISNFS 466 (680)
Q Consensus 416 l~~Lr~LdL~~~~~i~--------------------~lP-~~i~~--------L~~Lr~L~L~~~~~l~~lP~~~i~~L~ 466 (680)
+++|++|||++| .+. .+| ..+.. +.+|+.|+|.+ .++.++..++..++
T Consensus 48 l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred hccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence 788999999985 666 455 34567 89999999988 48999988899999
Q ss_pred CCcEeeccCCcc----hhhhcCCCCCceeEEEec---------------------------cchhhhhh-hhchhhhccc
Q 041114 467 KLRVLRLFGTVL----AKELLGLKHLEELDFTLR---------------------------CVHSLQIL-VSSNKLQSCT 514 (680)
Q Consensus 467 ~L~~L~l~~~~~----~~~l~~L~~L~~L~i~~~---------------------------~~~~l~~l-~~~~~l~~~L 514 (680)
+|+.|++.++.. ...+....++..+..... ....+... ....-...++
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 999999987641 122233333322221110 00000000 0000012233
Q ss_pred cEEEEeccCCCCccccccc-ccCCCCCEEEEeccCCcceeecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC--Cc
Q 041114 515 RALVLIRFKDSKSIDVIAL-ARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT--FL 591 (680)
Q Consensus 515 ~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l 591 (680)
..+.+.+.- .......+ ..+++|+.|+++++ .++.++...+ ..+++|+.|+|.+. ++.++ .+
T Consensus 205 ~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF----------~~~~~L~~l~l~~n--i~~I~~~aF 269 (329)
T 3sb4_A 205 NFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF----------AQKKYLLKIKLPHN--LKTIGQRVF 269 (329)
T ss_dssp SEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT----------TTCTTCCEEECCTT--CCEECTTTT
T ss_pred ceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh----------hCCCCCCEEECCcc--cceehHHHh
Confidence 344443321 11111111 12567777777653 3555544444 45677777777763 55544 25
Q ss_pred CCCCCCC-EEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCCccccCcceEE
Q 041114 592 VFAPNLK-CLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDSNSALEHKIAI 651 (680)
Q Consensus 592 ~~l~~L~-~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~~~~l~~L~i~ 651 (680)
..+++|+ .|.+.+ .++.+ +...|..+++|+.+.+.+ .+++.++......+.+|+.+
T Consensus 270 ~~~~~L~~~l~l~~--~l~~I-~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 270 SNCGRLAGTLELPA--SVTAI-EFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTCTTCCEEEEECT--TCCEE-CTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred hCChhccEEEEEcc--cceEE-chhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 6777777 777765 45555 334556677777777654 45666666544434555544
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.54 E-value=7.8e-08 Score=110.21 Aligned_cols=98 Identities=22% Similarity=0.234 Sum_probs=77.3
Q ss_pred ccceEEEEeecccccccccC-CCCccc------cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEec
Q 041114 376 WETVRRLSLMQNQIKILSEA-PTCPHL------HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNL 448 (680)
Q Consensus 376 ~~~~r~lsl~~~~~~~l~~~-~~~~~L------~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L 448 (680)
...++.|.+.+|.+..++.. ..+++| ++.+..+|.. |.++++|++|||++| .+..+|.+|+.|++|++|+|
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEEC
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEEC
Confidence 36789999999988877643 233333 6677778876 688888888888884 78888888888888888888
Q ss_pred cCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 449 EWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 449 ~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
++| .++.+|.+ |++|++|++|++++|.
T Consensus 301 ~~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 301 FDN-MVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSS-CCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CCC-CCCccChh-hhcCCCccEEeCCCCc
Confidence 888 68888887 8888888888888765
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.50 E-value=1.8e-07 Score=87.02 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=70.6
Q ss_pred cccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---chh-
Q 041114 406 KMITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LAK- 480 (680)
Q Consensus 406 ~~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~~- 480 (680)
..+|..+ .++|++|+|++ +.+..+ |..++.+++|++|+|++| .++.+|.+.++++++|++|++++|. .+.
T Consensus 25 ~~iP~~~---~~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 25 ASVPAGI---PTDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp SSCCSCC---CTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCc---CCCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 3566553 37899999999 488888 467999999999999999 8999998756899999999999875 222
Q ss_pred hhcCCCCCceeEEEeccc
Q 041114 481 ELLGLKHLEELDFTLRCV 498 (680)
Q Consensus 481 ~l~~L~~L~~L~i~~~~~ 498 (680)
.+..+++|+.|++..+..
T Consensus 100 ~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTTCTTCSEEECCSSCB
T ss_pred HhccccCCCEEEeCCCCc
Confidence 367788888888775543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.46 E-value=2.6e-07 Score=85.53 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=69.7
Q ss_pred ccchhhhccCCcceEEEccCCCCcccc-chhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---ch-hh
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKEL-LGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LA-KE 481 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~l-P~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~-~~ 481 (680)
.+|..+ .++|++|+|++ +.+..+ |..++.+++|++|+|++| .++.+|.+.+..+++|++|+++++. .+ ..
T Consensus 23 ~ip~~~---~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 23 SVPTGI---PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp SCCSCC---CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCccC---CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 455542 37899999999 589888 467999999999999999 7999999867899999999999986 22 24
Q ss_pred hcCCCCCceeEEEecc
Q 041114 482 LLGLKHLEELDFTLRC 497 (680)
Q Consensus 482 l~~L~~L~~L~i~~~~ 497 (680)
+..+++|+.|++..+.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEEeCCCC
Confidence 6778888888887554
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=4.1e-06 Score=88.73 Aligned_cols=227 Identities=13% Similarity=0.064 Sum_probs=135.6
Q ss_pred cccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---ch
Q 041114 404 EFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LA 479 (680)
Q Consensus 404 ~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~ 479 (680)
.+..++...|.++ +|+.+++.. .+..++ ..+.++.+|+.+++.++ .++.+|.+.+. ..+|+.+.+..+- ..
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~ 219 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLPVTLKEIGS 219 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECCTTCCEECT
T ss_pred CccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeCCchheehh
Confidence 3555666666653 566666664 566665 44667777777777776 67777776454 4677777775331 12
Q ss_pred hhhcCCCCCceeEEEeccchhhhhhhhchhhhccccEEEEeccCCCCcccccccccCCCCCEEEEeccCC----cceeec
Q 041114 480 KELLGLKHLEELDFTLRCVHSLQILVSSNKLQSCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEE----LEEWKT 555 (680)
Q Consensus 480 ~~l~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----l~~l~~ 555 (680)
..+.++.+|+.+.+.. ++..++...-...+|+.+.+.+ ++..++...+.++++|+.+.+.+... ...++.
T Consensus 220 ~aF~~~~~L~~l~l~~----~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPE----NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp TTTTTCTTCCCEECCT----TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT
T ss_pred hHhhCCCCCCEEecCC----CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH
Confidence 2345566666666541 1222221111124788888843 35566656888889999999875321 112333
Q ss_pred ccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCcccccc
Q 041114 556 DYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAK 633 (680)
Q Consensus 556 ~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~ 633 (680)
..+ ..+++|+.+.|.+ .++.++ .+..+++|+.+.|.. .++.+ ....|..+ +|+.+.+.+. .
T Consensus 294 ~aF----------~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I-~~~aF~~~-~L~~l~l~~n-~ 356 (401)
T 4fdw_A 294 YCL----------EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQI-NFSAFNNT-GIKEVKVEGT-T 356 (401)
T ss_dssp TTT----------TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEE-CTTSSSSS-CCCEEEECCS-S
T ss_pred HHh----------hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEE-cHHhCCCC-CCCEEEEcCC-C
Confidence 333 5678899998874 355554 366789999999954 36666 34456667 8888888774 4
Q ss_pred CCCCCCCCcccc-CcceEEecccccc
Q 041114 634 LRKLPLDSNSAL-EHKIAIRGEAGWW 658 (680)
Q Consensus 634 L~~lP~~~~~~l-~~L~i~~~~~~~~ 658 (680)
+..++.+....+ ..+..+..+....
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CcccccccccCCCCCccEEEeCHHHH
Confidence 555555433333 2445555554443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.26 E-value=1e-05 Score=85.74 Aligned_cols=181 Identities=11% Similarity=0.077 Sum_probs=131.5
Q ss_pred cccccccchhhhccCCcceEEEccCCCCccccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---c
Q 041114 402 HYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---L 478 (680)
Q Consensus 402 ~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~ 478 (680)
.+.+..++...|.++.+|+.++|+. +.+..+|...-...+|+.+.+..+ ++.++..++..+.+|+.+++..+- .
T Consensus 165 p~~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~ 241 (401)
T 4fdw_A 165 PSTLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIG 241 (401)
T ss_dssp CTTCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEEC
T ss_pred CCCccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcc
Confidence 4467788888899999999999998 589999966555789999999854 899999889999999999997532 1
Q ss_pred hhhhcCCCCCceeEEEeccchhhhhhh-hchhhhccccEEEEeccCC----CCcccccccccCCCCCEEEEeccCCccee
Q 041114 479 AKELLGLKHLEELDFTLRCVHSLQILV-SSNKLQSCTRALVLIRFKD----SKSIDVIALARLKHLSTLHFSKCEELEEW 553 (680)
Q Consensus 479 ~~~l~~L~~L~~L~i~~~~~~~l~~l~-~~~~l~~~L~~L~l~~~~~----~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 553 (680)
...+.+ .+|+.+.+. + .+..++ .....+.+|+.+.+.+... ...++...+..+++|+.+.+.+ .++.+
T Consensus 242 ~~aF~~-~~L~~i~lp-~---~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I 314 (401)
T 4fdw_A 242 QEAFRE-SGITTVKLP-N---GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRIL 314 (401)
T ss_dssp TTTTTT-CCCSEEEEE-T---TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEE
T ss_pred cccccc-CCccEEEeC-C---CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEE
Confidence 123334 577777774 1 222222 2223456899999876532 1234545888999999999973 57776
Q ss_pred ecccCCCCccCCCCCCCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecC
Q 041114 554 KTDYTSGTVLKSPQPFVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDC 605 (680)
Q Consensus 554 ~~~~~~~~~l~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c 605 (680)
+...+ ..+++|+.+.|... ++.+. .+..+ +|+.+.+.+.
T Consensus 315 ~~~aF----------~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 315 GQGLL----------GGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTTT----------TTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred hhhhh----------cCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 55554 56789999999653 55544 36677 9999999874
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.25 E-value=1.9e-06 Score=89.53 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=41.8
Q ss_pred ccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC
Q 041114 407 MITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT 476 (680)
Q Consensus 407 ~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~ 476 (680)
.+|+..|..+++|++|+|++| .+..+| ..+++|++|++|+|++| .+..+|.+.+..+. |++|++.++
T Consensus 46 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 46 HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp EECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC-ceEEEeeCC
Confidence 445444666777777777773 666655 34567777777777776 56677665333343 777776654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.23 E-value=1.7e-06 Score=90.00 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=73.5
Q ss_pred cccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc---ch
Q 041114 404 EFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV---LA 479 (680)
Q Consensus 404 ~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~---~~ 479 (680)
.+..+|. +..+.+|++|+|++++.+..+| ..++.|++|++|+|++| .+..+|++.+++|++|++|+|++|. .+
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4557787 7889999999999635899888 56999999999999999 7999988768999999999999986 22
Q ss_pred h-hhcCCCCCceeEEEeccch
Q 041114 480 K-ELLGLKHLEELDFTLRCVH 499 (680)
Q Consensus 480 ~-~l~~L~~L~~L~i~~~~~~ 499 (680)
. .+..+. |+.|.+..+...
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp STTTCSCC-CCEEECCSSCCC
T ss_pred HHHcccCC-ceEEEeeCCCcc
Confidence 2 233344 888888755443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=6.1e-07 Score=82.35 Aligned_cols=89 Identities=21% Similarity=0.217 Sum_probs=55.9
Q ss_pred cccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcceeecccCCCCccCCCCCC--CCCCccEEeeeCCCCCCC--C
Q 041114 513 CTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEEWKTDYTSGTVLKSPQPF--VFCSLHKVTITFCPKLKG--L 588 (680)
Q Consensus 513 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~--~l~~L~~L~L~~c~~l~~--l 588 (680)
+|+.|++++|. +.......+..+++|++|++++|..+++-....+.. . ..++|++|+|++|+.+++ +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~--------~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ--------LENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT--------CHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh--------cccccCCCCEEEcCCCCcCCHHHH
Confidence 57777777776 555554566677777777777777666544333310 0 013577777777776654 3
Q ss_pred CCcCCCCCCCEEeEecCcchhH
Q 041114 589 TFLVFAPNLKCLSLFDCTAMEE 610 (680)
Q Consensus 589 ~~l~~l~~L~~L~l~~c~~l~~ 610 (680)
..+..+++|++|+|++|+.+++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 3455677777777777776554
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=5.2e-06 Score=76.16 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=29.1
Q ss_pred ccccEEEEeccCCCCcccccccccCCCCCEEEEeccCCcce
Q 041114 512 SCTRALVLIRFKDSKSIDVIALARLKHLSTLHFSKCEELEE 552 (680)
Q Consensus 512 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 552 (680)
++|+.|++++|..+....+..+.++++|++|++++|+.++.
T Consensus 114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 36777777777766666555667777788888877777664
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=8.3e-06 Score=85.46 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=61.8
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccc--cchhhhccCCCCEEeccCCCCc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKE--LLGELKALVNLKCVNLEWARDL 454 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~--lP~~i~~L~~Lr~L~L~~~~~l 454 (680)
+.++.+++.++.+.... ...+........++|++|||++| .+.. +..-...+.+|++|+|++| .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~-----------~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l 138 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVK-----------CTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SL 138 (372)
T ss_dssp TTCCEEECTTSCCCHHH-----------HHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CC
T ss_pred hhCCEEEecCCCCCHHH-----------HHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CC
Confidence 46778888877765321 11222221123368899999985 5643 2222335678889999988 67
Q ss_pred cccchhhh-----cCCCCCcEeeccCCcc--------hhhhcCCCCCceeEEEec
Q 041114 455 VTIPLEVI-----SNFSKLRVLRLFGTVL--------AKELLGLKHLEELDFTLR 496 (680)
Q Consensus 455 ~~lP~~~i-----~~L~~L~~L~l~~~~~--------~~~l~~L~~L~~L~i~~~ 496 (680)
+..+...+ ....+|++|++++|.. ...+..+++|+.|+++.+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 65432222 3467888888888752 112344555666665543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=9.7e-06 Score=84.35 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=34.6
Q ss_pred hccCCcceEEEccCCCC----c-----cccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 413 FQFMPLLKVLNMSRETN----I-----KELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~----i-----~~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
..++++|+.|.+...+. + ..++.-+..+++|+.|+|++|..+ .+|. +. +.+|++|++..|.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSB
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCC
Confidence 44567777777755211 1 134455566777777777766322 3443 32 6667777666543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.57 E-value=0.00089 Score=70.57 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=35.1
Q ss_pred CCCCCccEEeeeCCCCCCCCC--CcCCCCCCCEEeEecCcchhHhhhcCCCCCCCcccccCccccccCCCCCCCC
Q 041114 569 FVFCSLHKVTITFCPKLKGLT--FLVFAPNLKCLSLFDCTAMEEIISAGKFVHTPEMMGNTMDPCAKLRKLPLDS 641 (680)
Q Consensus 569 ~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~i~~~~~~~~lp~L~~L~i~~C~~L~~lP~~~ 641 (680)
....+|+.+.+.+. ++.++ .+..+.+|+.+.|.+ .++.+ +...|.++++|+.+.+.. +++.++...
T Consensus 294 ~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~~a 361 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEI-GKRSFRGCTSLSNINFPL--SLRKIGANA 361 (394)
T ss_dssp TTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEE-hHHhccCCCCCCEEEECc--cccEehHHH
Confidence 34566777766542 33332 245677777777743 34444 334455566666665542 355554433
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.56 E-value=4e-05 Score=79.68 Aligned_cols=168 Identities=12% Similarity=0.009 Sum_probs=83.3
Q ss_pred ccchhhhccCCCCEEeccCCCCcc----------ccchhhhcCCCCCcEeeccCCcchhhhcCCCCCceeEEEeccchhh
Q 041114 432 ELLGELKALVNLKCVNLEWARDLV----------TIPLEVISNFSKLRVLRLFGTVLAKELLGLKHLEELDFTLRCVHSL 501 (680)
Q Consensus 432 ~lP~~i~~L~~Lr~L~L~~~~~l~----------~lP~~~i~~L~~L~~L~l~~~~~~~~l~~L~~L~~L~i~~~~~~~l 501 (680)
.+++++..+++|+.|.+... ... .++. ++..+++|+.|+++++..+ .
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~-~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l--------------------~- 186 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDI-DFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL--------------------S- 186 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCC-CTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC--------------------B-
T ss_pred HHHHhhhhcchhhheeecCc-chhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc--------------------e-
Confidence 34566788999999998654 111 2333 2556667777776655210 0
Q ss_pred hhhhhchhhhccccEEEEeccCCCCccccccc--ccCCCCCEEEEeccCCc--ceeecccCCCCccCCCCCCCCCCccEE
Q 041114 502 QILVSSNKLQSCTRALVLIRFKDSKSIDVIAL--ARLKHLSTLHFSKCEEL--EEWKTDYTSGTVLKSPQPFVFCSLHKV 577 (680)
Q Consensus 502 ~~l~~~~~l~~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~l--~~l~~~~~~~~~l~~~~~~~l~~L~~L 577 (680)
++.. ...+|+.|.+..+. +.......+ ..+++|+.|+|+.+... .......+.. ......+++|+.|
T Consensus 187 --l~~~--~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~----~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 187 --IGKK--PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP----LFSKDRFPNLKWL 257 (362)
T ss_dssp --CCSC--BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG----GSCTTTCTTCCEE
T ss_pred --eccc--cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH----HHhcCCCCCcCEE
Confidence 0110 02366666666543 222111122 25677777777522110 0000000000 0001357788888
Q ss_pred eeeCCCCCCCC----CCcCCCCCCCEEeEecCcchhHhhh---cCCCCCCCcccccCccccc
Q 041114 578 TITFCPKLKGL----TFLVFAPNLKCLSLFDCTAMEEIIS---AGKFVHTPEMMGNTMDPCA 632 (680)
Q Consensus 578 ~L~~c~~l~~l----~~l~~l~~L~~L~l~~c~~l~~i~~---~~~~~~lp~L~~L~i~~C~ 632 (680)
.|.+|...... .....+|+|++|+|+.+ .+...-. ......+++|+.|++++|.
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 88876532111 01135788888888764 3444210 0111346778888887764
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=0.00014 Score=76.17 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=59.1
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccc-hhh-----hccCCCCEEeccC
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GEL-----KALVNLKCVNLEW 450 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i-----~~L~~Lr~L~L~~ 450 (680)
.+++.|.+++|.+... . ...++..+++|+.|+|++| .+.... ..+ ....+|++|+|++
T Consensus 101 ~~L~~L~Ls~n~l~~~--------------~-~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~ 164 (372)
T 3un9_A 101 HALDEVNLASCQLDPA--------------G-LRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSN 164 (372)
T ss_dssp SCEEEEECTTCCCCHH--------------H-HHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCS
T ss_pred CCceEEEecCCCCCHH--------------H-HHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCC
Confidence 5899999998877532 0 1112344668999999995 675433 233 2467899999999
Q ss_pred CCCccc-----cchhhhcCCCCCcEeeccCCc
Q 041114 451 ARDLVT-----IPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 451 ~~~l~~-----lP~~~i~~L~~L~~L~l~~~~ 477 (680)
| .++. ++.. +..+++|++|++++|.
T Consensus 165 n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 165 N-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTG 194 (372)
T ss_dssp S-CCHHHHHHHHHHH-HHTCSSCCEEECTTSS
T ss_pred C-CCChHHHHHHHHH-HhcCCCcCEEeCCCCC
Confidence 9 6765 4553 6788999999999986
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.36 E-value=0.0002 Score=70.62 Aligned_cols=61 Identities=28% Similarity=0.323 Sum_probs=47.3
Q ss_pred ccCCcceEEEccCCCCccc---cchhhhccCCCCEEeccCCCCccccchhhhcCCC--CCcEeeccCCcc
Q 041114 414 QFMPLLKVLNMSRETNIKE---LLGELKALVNLKCVNLEWARDLVTIPLEVISNFS--KLRVLRLFGTVL 478 (680)
Q Consensus 414 ~~l~~Lr~LdL~~~~~i~~---lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~--~L~~L~l~~~~~ 478 (680)
.++++|+.|+|++| .+.. +|..++.+++|++|+|++| .+..+.. +..+. +|++|++++|..
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcceEEccCCcC
Confidence 56888999999995 6655 4466788999999999998 7887743 56665 888999888763
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.15 E-value=0.0017 Score=68.31 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=38.2
Q ss_pred cchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 408 ITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 408 lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
+....|.++.+|+.+.+.. .+..++ ..+.++.+|+.+.+..+ ++.++...+....+|+.+.+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence 4444566667777777764 344555 33556667777766654 5666655566666666665543
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.08 E-value=0.00095 Score=62.17 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=47.2
Q ss_pred hhccCCcceEEEccCCCCcc-----ccchhhhccCCCCEEeccCCCCccc-----cchhhhcCCCCCcEeeccCCc
Q 041114 412 FFQFMPLLKVLNMSRETNIK-----ELLGELKALVNLKCVNLEWARDLVT-----IPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 412 ~~~~l~~Lr~LdL~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.+...+.|+.|+|++|..+. .+...+...++|++|+|++| .+.. +... +...++|++|++++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~-L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEM-LKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHH-HHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHH-HHhCCCcCEEECcCCc
Confidence 36778899999999852553 35566777889999999999 5764 3343 5566788889888875
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.08 E-value=0.013 Score=61.41 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=28.1
Q ss_pred ccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeec
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRL 473 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l 473 (680)
++.+....|..+.+|+.+.+.. ++..++ ..+..+.+|+.+.+... +..++...+....+|+.+.+
T Consensus 102 l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 102 VKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp CCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEC
T ss_pred eeEechhhchhcccceeeccCC--ccceehhhhhhhhcccccccccce--eeeecccceecccccccccc
Confidence 3344444455555555444443 233443 22344444555544432 34444433444444444444
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.02 E-value=0.0037 Score=65.82 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=54.3
Q ss_pred ccccccchhhhccCCcceEEEccCC--CCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccC
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRE--TNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFG 475 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~--~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~ 475 (680)
..++.+.+..|.++.+|+.+.++.+ +.++.++ ..+..+.+|+.+.+..+ ++.++...+..+.+|+.+.+..
T Consensus 73 ~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 73 DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPE 146 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCT
T ss_pred CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccc
Confidence 3466777888999999999998764 3466776 45777888888887754 7888877788889999988854
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.68 E-value=0.0024 Score=59.41 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=72.1
Q ss_pred cceEEEEeecc-cccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccc-----cchhhhccCCCCEEeccC
Q 041114 377 ETVRRLSLMQN-QIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKE-----LLGELKALVNLKCVNLEW 450 (680)
Q Consensus 377 ~~~r~lsl~~~-~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~-----lP~~i~~L~~Lr~L~L~~ 450 (680)
+.+++|.+.++ .+..- ....+... +...++|++|+|++| .+.. +...+...++|++|+|++
T Consensus 36 ~~L~~L~L~~n~~i~~~-----------g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVP-----------TLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp TTCCEEECTTCTTCCHH-----------HHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred CCCCEEEecCCCCCCHH-----------HHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 57889999887 66531 11233333 667889999999995 6643 556677778999999999
Q ss_pred CCCccc-----cchhhhcCCCCCcEeec--cCCcc--------hhhhcCCCCCceeEEEec
Q 041114 451 ARDLVT-----IPLEVISNFSKLRVLRL--FGTVL--------AKELLGLKHLEELDFTLR 496 (680)
Q Consensus 451 ~~~l~~-----lP~~~i~~L~~L~~L~l--~~~~~--------~~~l~~L~~L~~L~i~~~ 496 (680)
| .+.. +... +...++|++|++ ++|.. ...+...+.|+.|++..+
T Consensus 103 N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 103 N-FISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp S-CCCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred C-cCCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 9 6775 4554 777889999999 65541 123344466666666544
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.59 E-value=0.0024 Score=62.91 Aligned_cols=81 Identities=27% Similarity=0.277 Sum_probs=60.9
Q ss_pred cceEEEEeecccccccccCCCCccccccccccchhhhccCCcceEEEccCCCCccccchhhhccC--CCCEEeccCCCCc
Q 041114 377 ETVRRLSLMQNQIKILSEAPTCPHLHYEFKMITDGFFQFMPLLKVLNMSRETNIKELLGELKALV--NLKCVNLEWARDL 454 (680)
Q Consensus 377 ~~~r~lsl~~~~~~~l~~~~~~~~L~~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~~i~~L~--~Lr~L~L~~~~~l 454 (680)
++++.|.+++|.+..++ .+|.. +..+++|++|+|++ +.+..+ ..++.|. +|++|+|++|. +
T Consensus 170 ~~L~~L~Ls~N~l~~l~-------------~l~~~-~~~l~~L~~L~Ls~-N~i~~~-~~l~~l~~l~L~~L~L~~Np-l 232 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD-------------DMSSI-VQKAPNLKILNLSG-NELKSE-RELDKIKGLKLEELWLDGNS-L 232 (267)
T ss_dssp TTCCEEECTTSCCCCCG-------------GGTTH-HHHSTTCCEEECTT-SCCCSG-GGGGGGTTSCCSEEECTTST-T
T ss_pred CCCCEEECCCCCCCCCc-------------cchhH-HhhCCCCCEEECCC-CccCCc-hhhhhcccCCcceEEccCCc-C
Confidence 58999999999987553 34443 77899999999999 488877 4566666 99999999995 5
Q ss_pred c-ccch------hhhcCCCCCcEeecc
Q 041114 455 V-TIPL------EVISNFSKLRVLRLF 474 (680)
Q Consensus 455 ~-~lP~------~~i~~L~~L~~L~l~ 474 (680)
. .+|. .++..+++|+.||-.
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred ccccCcchhHHHHHHHHCcccCeECCc
Confidence 4 3442 236778888888754
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.17 E-value=0.21 Score=51.71 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=31.5
Q ss_pred ccccchhhhccCCcceEEEccCCCCccccch-hhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeec
Q 041114 405 FKMITDGFFQFMPLLKVLNMSRETNIKELLG-ELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRL 473 (680)
Q Consensus 405 l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP~-~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l 473 (680)
++.+++..|.++.+|+.++|.. .++.++. .+.+. +|..+.+.. +++.++...+.. .+|+.+.+
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CCCSEEEC
T ss_pred ccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc-CCcccccC
Confidence 4455666666666666666654 3555542 23333 344444443 245555443322 24555544
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.96 E-value=0.023 Score=49.17 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=41.7
Q ss_pred eEEEccCCCCcc--ccchhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCCc
Q 041114 420 KVLNMSRETNIK--ELLGELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 420 r~LdL~~~~~i~--~lP~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~~ 477 (680)
.+++-++ ..++ .+|..+. .+|++|+|++| .|+.||.+++..+.+|++|++.+|.
T Consensus 11 ~~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGR-RGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCS-SCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCC-CCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3677777 5777 8885532 36889999998 7999988877888889999888753
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.53 E-value=0.21 Score=42.99 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=30.4
Q ss_pred CcceEEEccCCCCccccchh-hhccCCCCEEeccCCC
Q 041114 417 PLLKVLNMSRETNIKELLGE-LKALVNLKCVNLEWAR 452 (680)
Q Consensus 417 ~~Lr~LdL~~~~~i~~lP~~-i~~L~~Lr~L~L~~~~ 452 (680)
.+|++|+|++ +.|..+|.+ +..+++|++|+|++|.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 4689999999 599999955 7889999999999984
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.28 E-value=0.57 Score=48.38 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=65.9
Q ss_pred ccccccchhhhccCCcceEEEccCCCCccccc-hhhhccCCCCEEeccCCCCccccchhhhcCCCCCcEeeccCC-cch-
Q 041114 403 YEFKMITDGFFQFMPLLKVLNMSRETNIKELL-GELKALVNLKCVNLEWARDLVTIPLEVISNFSKLRVLRLFGT-VLA- 479 (680)
Q Consensus 403 ~~l~~lp~~~~~~l~~Lr~LdL~~~~~i~~lP-~~i~~L~~Lr~L~L~~~~~l~~lP~~~i~~L~~L~~L~l~~~-~~~- 479 (680)
..+..+....|..+.+|+.+.+.. .+..++ ..+..+.+|+.+.+.++ .++.++...+..+.+|+.+.+... ..+
T Consensus 249 ~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~ 325 (379)
T 4h09_A 249 KNVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALKTIQ 325 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEEC
T ss_pred CCccEeCccccceeehhccccccc--cceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCccccEEH
Confidence 446677777888999999999975 577777 45778899999999887 688898887889999999988542 222
Q ss_pred -hhhcCCCCCceeEE
Q 041114 480 -KELLGLKHLEELDF 493 (680)
Q Consensus 480 -~~l~~L~~L~~L~i 493 (680)
..+.++.+|+.+.+
T Consensus 326 ~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 326 VYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTTTCTTCCCCCC
T ss_pred HHHhhCCCCCCEEEE
Confidence 23455666665554
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.84 E-value=1.2 Score=41.22 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=40.6
Q ss_pred hccCCcceEEEccCCCCcc-----ccchhhhccCCCCEEeccCCCCccc-----cchhhhcCCCCCcEeeccCCc
Q 041114 413 FQFMPLLKVLNMSRETNIK-----ELLGELKALVNLKCVNLEWARDLVT-----IPLEVISNFSKLRVLRLFGTV 477 (680)
Q Consensus 413 ~~~l~~Lr~LdL~~~~~i~-----~lP~~i~~L~~Lr~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~ 477 (680)
+..-+.|+.|+|+++..|. .+-+.+..=++|+.|+|++| .+.. |-. ++..=+.|++|++++|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~-aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIE-LIETSPSLRVLNVESNF 109 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHH-HHHHCSSCCEEECCSSB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHH-HHhcCCccCeEecCCCc
Confidence 4556778889998743443 24455666678888888888 5653 222 13344677777777664
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.07 E-value=9.3 Score=38.23 Aligned_cols=118 Identities=13% Similarity=0.029 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcC---CchhHHHHHHH
Q 041114 201 ELAQTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSL---QNDVIRSCFLY 277 (680)
Q Consensus 201 ~~~~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L---~~~~lk~cfl~ 277 (680)
+....|...|+|.|+++..++..+....+...+.. .+-. .+...+.-.+..+ ++ ..+..+..
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~l~~l~~~~~-~~~~~l~~ 290 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE-----------VAKGLIMGELEELRRRSP-RYVDILRA 290 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH-----------HHHHHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH-----------HHHHHHHHHHHHHHhCCh-hHHHHHHH
Confidence 46788999999999999999876533222222211 1111 1111111112222 66 78889988
Q ss_pred hcccCCCcccChHHHHHHHHHcCCcCCCChhhHHHHHHHHHHHHHHcccccccCcccEEe-chhHHHH
Q 041114 278 CCLYPEDFAILKRDLIDCWIGEGFLDERDSFSAQNQGYYIVGTLVHAWLLEEVGDDKVKL-HGVLHDM 344 (680)
Q Consensus 278 ~s~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~m-hdl~~d~ 344 (680)
+|. + ..+...+....-+.. -. . .......+++.|.+.+++... ...|.+ |.++++.
T Consensus 291 la~---g-~~~~~~l~~~~~~~~-~~----~-~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 291 IAL---G-YNRWSLIRDYLAVKG-TK----I-PEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV 347 (350)
T ss_dssp HHT---T-CCSHHHHHHHHHHTT-CC----C-CHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred HHh---C-CCCHHHHHHHHHHHh-CC----C-CHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence 887 2 245455554432211 00 0 124456789999999999875 345665 5566554
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.39 E-value=18 Score=36.10 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=67.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhccCCCHHHHHHHHHHHhcCCCccccCChhhHHHHHH-HhHh--cCCchhHHHHHHHhcc
Q 041114 204 QTVTKECGGSPLALITIGRAMAYKKKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLK-FSYD--SLQNDVIRSCFLYCCL 280 (680)
Q Consensus 204 ~~I~~kc~GlPLai~~lg~~L~~k~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~-~Sy~--~L~~~~lk~cfl~~s~ 280 (680)
..|+..|+|.|+++..++..+....+...|-.. ..+. ....+...+. +.++ .|++ ..+..+..+|+
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~ 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ--TLEY--------AKKLILKEFENFLHGREIARK-RYLNIMRTLSK 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH--HHHH--------HHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHH--HHHH--------HHHHHHHHHHHHhhccccccH-HHHHHHHHHHc
Confidence 789999999999999999887543344344221 1100 0001222222 1111 5777 78899999888
Q ss_pred cCCCcccChHHHHHHHH-HcCC-cCCCChhhHHHHHHHHHHHHHHcccccccCcccEEe-chhHHHH
Q 041114 281 YPEDFAILKRDLIDCWI-GEGF-LDERDSFSAQNQGYYIVGTLVHAWLLEEVGDDKVKL-HGVLHDM 344 (680)
Q Consensus 281 Fp~~~~i~~~~Li~~Wi-aeg~-i~~~~~~~~~~~g~~~~~~L~~~~ll~~~~~~~~~m-hdl~~d~ 344 (680)
+. +...+....- ..|. + .......+++.|.+++++.... ..|++ |+++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~~~-------~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGIEI-------SDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCSCC-------CHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred ---CC--CHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 22 4444433221 1121 1 1234567899999999998753 56764 5677654
No 171
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=68.84 E-value=3.7 Score=37.83 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=49.4
Q ss_pred hhccCCCCEEeccCCCCccc-----cchhhhcCCCCCcEeeccCCcc--------hhhhcCCCCCceeEEEeccch--hh
Q 041114 437 LKALVNLKCVNLEWARDLVT-----IPLEVISNFSKLRVLRLFGTVL--------AKELLGLKHLEELDFTLRCVH--SL 501 (680)
Q Consensus 437 i~~L~~Lr~L~L~~~~~l~~-----lP~~~i~~L~~L~~L~l~~~~~--------~~~l~~L~~L~~L~i~~~~~~--~l 501 (680)
+.+-+.|+.|+|+++..+.. +-.. +..=+.|+.|++++|.. -..|..=+.|+.|++..+... +.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 44567899999987524542 3333 56667899999998751 123334456777777654432 22
Q ss_pred hhhhhchhhhccccEEEEecc
Q 041114 502 QILVSSNKLQSCTRALVLIRF 522 (680)
Q Consensus 502 ~~l~~~~~l~~~L~~L~l~~~ 522 (680)
..+.......+.|+.|+|+++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 333333333345777777654
No 172
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=63.29 E-value=8.8 Score=29.04 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=17.2
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 041114 55 RVLDAERQQLRRLDQVQVWLSRVEAVKTETD 85 (680)
Q Consensus 55 ~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~e 85 (680)
+|.+.|..-......+...++++.++.|..+
T Consensus 38 KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~ 68 (75)
T 3mtu_A 38 KLRNIELICQENEGENDPVLQRIVDILYATD 68 (75)
T ss_dssp HHHHHHHHHHHTGGGTCHHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccC
Confidence 4444444332223344567778888777654
No 173
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=60.51 E-value=19 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041114 37 ALAIELAKLIAAKNNLITRVLDAE 60 (680)
Q Consensus 37 ~L~~~l~~l~a~~~~~~~~l~~ae 60 (680)
.|+++++.++++-+.++.+++.-|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888666666676654
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.43 E-value=11 Score=37.39 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHcCCcCC-CChhhHHHHHHHHHH-HHHHcccccc
Q 041114 295 CWIGEGFLDE-RDSFSAQNQGYYIVG-TLVHAWLLEE 329 (680)
Q Consensus 295 ~Wiaeg~i~~-~~~~~~~~~g~~~~~-~L~~~~ll~~ 329 (680)
+-+..|++.. ..+..+.+.|..||+ ++.+|+++|+
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4567899976 667788899999998 9999999985
No 175
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=51.20 E-value=68 Score=25.69 Aligned_cols=53 Identities=15% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCccCCCchhhhhHHHHHHHHHHHHHHHHhc
Q 041114 71 QVWLSRVEAVKTETDELIRRSSKEIDKLCPRAYCSKSCKSSYKFRKQVAKKLRDVRTLIGE 131 (680)
Q Consensus 71 ~~Wl~~v~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~ 131 (680)
+.-++++.....+|+++|+..+.+++.. +.-.|..+-.|++....++..+..+
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~--------p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREI--------PPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS--------CTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999998742 2234667777888877777776554
No 176
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.26 E-value=1e+02 Score=23.91 Aligned_cols=65 Identities=26% Similarity=0.216 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 27 CTRNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 27 ~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
+-+..+.+++.|...+..+.+-...+...+.+.+--+.. ...+.....++..+..+.+...+++.
T Consensus 16 LSykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d-~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 16 LSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQP-HEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888888888877777778776532222 45677888899888888888888775
No 177
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.78 E-value=41 Score=34.37 Aligned_cols=122 Identities=11% Similarity=-0.037 Sum_probs=64.9
Q ss_pred HHHHHHHHHhC------CChhHHHHHHHH-hc-----cC--CCHHHHHHHHHHHhcCCCccccCChhhHHHHHHHhHhcC
Q 041114 201 ELAQTVTKECG------GSPLALITIGRA-MA-----YK--KKPEEWRYAIEVLRKSSSSEFAGLVKEVYPLLKFSYDSL 266 (680)
Q Consensus 201 ~~~~~I~~kc~------GlPLai~~lg~~-L~-----~k--~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~~Sy~~L 266 (680)
+....|++.|+ |.|..+..+... .. +. -+.+.+..+..... . ...+.-++..|
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~------------~-~~~~~~~l~~l 306 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE------------A-ASIQTHELEAL 306 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSS
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh------------c-cchHHHHHHcC
Confidence 56678888999 999655444332 21 10 12333433322111 0 22344466789
Q ss_pred CchhHHHHHHHhcccC--CCcccChHHHHHHHH--H---cCCcCCCChhhHHHHHHHHHHHHHHccccccc-----Cccc
Q 041114 267 QNDVIRSCFLYCCLYP--EDFAILKRDLIDCWI--G---EGFLDERDSFSAQNQGYYIVGTLVHAWLLEEV-----GDDK 334 (680)
Q Consensus 267 ~~~~lk~cfl~~s~Fp--~~~~i~~~~Li~~Wi--a---eg~i~~~~~~~~~~~g~~~~~~L~~~~ll~~~-----~~~~ 334 (680)
|. +.+.++..++.++ .+..++..++...+. + .|. .. ........++++|...+++... ..+.
T Consensus 307 ~~-~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~ 380 (412)
T 1w5s_A 307 SI-HELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KP----RGYTQYHIYLKHLTSLGLVDAKPSGRGMRGR 380 (412)
T ss_dssp CH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CC----CCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred CH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CC----CCHHHHHHHHHHHHhCCCEEeecccCCCCCc
Confidence 98 8899988888754 233555555554442 2 121 10 0123455789999999999764 2334
Q ss_pred EEechhH
Q 041114 335 VKLHGVL 341 (680)
Q Consensus 335 ~~mhdl~ 341 (680)
+++|++.
T Consensus 381 ~~~~~l~ 387 (412)
T 1w5s_A 381 TTLFRLA 387 (412)
T ss_dssp CCEEEEC
T ss_pred eeEEEeC
Confidence 5555554
No 178
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=40.47 E-value=17 Score=19.70 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q 041114 67 LDQVQVWLSRVEAV 80 (680)
Q Consensus 67 ~~~v~~Wl~~v~~~ 80 (680)
-+.|+.|+++++-+
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 46899999998753
No 179
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=33.40 E-value=28 Score=34.56 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=26.6
Q ss_pred cccccHHHHHHHHHHHhhhccccceeeeccccc
Q 041114 153 QIVEGLQSQLKQVWRCLVEESIGIIGLYGMGSV 185 (680)
Q Consensus 153 ~~v~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi 185 (680)
..++||+.+++++.+.+... +++.|+|.+|+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~ 42 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRV 42 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTS
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcC
Confidence 45789999999999998764 78889999987
No 180
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.10 E-value=1.6e+02 Score=22.21 Aligned_cols=63 Identities=10% Similarity=0.146 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 30 NLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 30 ~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
.+++.+..|+.+.+.-..-.......+.+++.+.......|...-+++.-+..|+|..-+...
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777776666666666668888777666677788888888888888887766643
No 181
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=28.27 E-value=2.3e+02 Score=22.58 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCccCCCchhhhhHHHHHHHHHHHHHHHHh
Q 041114 68 DQVQVWLSRVEAVKTETDELIRRSSKEIDKLCPRAYCSKSCKSSYKFRKQVAKKLRDVRTLIG 130 (680)
Q Consensus 68 ~~v~~Wl~~v~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~ 130 (680)
+.=+.-++++.....+|+++++..+.+++.. +.-.|-.+-.|++....++..+..
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~--------p~s~R~~~~~klr~Yk~dL~~lk~ 99 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA--------PLTFRNPMMSKLRNYRKDLAKLHR 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445668999999999999999999988742 233466777778887777776643
No 182
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.64 E-value=2.7e+02 Score=23.24 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041114 29 RNLQDNVAALAIELAKLIAAKNNLITRVLDAERQQL 64 (680)
Q Consensus 29 ~~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~ 64 (680)
..++..++.|+.+++.+++....+...+.++|.+..
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888877653
No 183
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.76 E-value=2e+02 Score=21.83 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=35.8
Q ss_pred hhhhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 041114 14 FNRCLDCFLGKAACTRNLQDNVAALAIELAKLIAAKNNLITRV--LDAERQQLRRLDQVQVWLSRVEAVKTETDE 86 (680)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~l~~l~a~~~~~~~~l--~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed 86 (680)
+++|-.-+.+-+.-..-++-+++.|+.+-..+..-.+..+... .+++..+. ...-..|=.+++.+...+|+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL--k~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL--KEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhc
Confidence 5555555555444444555566666666666555422222211 11222222 24455688888777655443
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.22 E-value=40 Score=33.48 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred cccccHHHHHHHHHHHhhhccccceeeeccccc
Q 041114 153 QIVEGLQSQLKQVWRCLVEESIGIIGLYGMGSV 185 (680)
Q Consensus 153 ~~v~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi 185 (680)
..++||+.+++.+.+ +.. +++.|+|.+|+
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~ 41 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRT 41 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTS
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCC
Confidence 457899999999999 765 68999999987
No 185
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=23.96 E-value=25 Score=35.99 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=24.3
Q ss_pred cccccHHHHHHHHHHHh-hh------ccccce--eeeccccc
Q 041114 153 QIVEGLQSQLKQVWRCL-VE------ESIGII--GLYGMGSV 185 (680)
Q Consensus 153 ~~v~gr~~~~~~i~~~L-~~------~~~~vi--~i~GmgGi 185 (680)
..++||+.+++++.+.+ .. .....+ +|+|.+|+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~ 63 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGI 63 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCC
Confidence 45789999999999988 42 233344 44999997
No 186
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.70 E-value=3.1e+02 Score=22.71 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041114 30 NLQDNVAALAIELAKLIAAKNNLITRVLDAERQQL 64 (680)
Q Consensus 30 ~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~ 64 (680)
.++..++.|+.+++.+++....+...+.++|.+..
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777887776653
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=23.67 E-value=48 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred ccccHHHHHHHHHHHhhhccccceeeeccccc
Q 041114 154 IVEGLQSQLKQVWRCLVEESIGIIGLYGMGSV 185 (680)
Q Consensus 154 ~v~gr~~~~~~i~~~L~~~~~~vi~i~GmgGi 185 (680)
.++|++..++++.+.+.......+-|+|..|+
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~ 54 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGV 54 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTS
T ss_pred ccccchHHHHHHHHHHhcCCCCceEEECCCCC
Confidence 35699999999999997766666778998876
No 188
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.18 E-value=2e+02 Score=23.44 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 041114 38 LAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSSK 93 (680)
Q Consensus 38 L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~~ 93 (680)
++.++..|+...+..+.+++.|+.++.. +.+....+++..+.-+++.+-..-.+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~--~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAA--DKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCT--THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555558888766644 67778888888888888877665443
No 189
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.50 E-value=2.5e+02 Score=21.20 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 041114 36 AALAIELAKLIAAKNNLITRVLDAERQQLR 65 (680)
Q Consensus 36 ~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~ 65 (680)
+.+.++|..+++.....+.++.+|+.+...
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777666667778888776544
No 190
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.37 E-value=2.6e+02 Score=23.98 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 041114 69 QVQVWLSRV 77 (680)
Q Consensus 69 ~v~~Wl~~v 77 (680)
-|+.|+.+.
T Consensus 129 LV~RWM~rk 137 (152)
T 3a7p_A 129 LVARWLKKT 137 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 191
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.22 E-value=3.1e+02 Score=21.71 Aligned_cols=63 Identities=8% Similarity=0.147 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 30 NLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 30 ~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
.++..++.|+.+.+.-..--......+..++.+.......|...-+++.-+..|+|..-+...
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556655555555555555556666666666678888888888888888887766553
No 192
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.31 E-value=3.2e+02 Score=21.54 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041114 30 NLQDNVAALAIELAKLIAAKNNLITRVLDAERQQLRRLDQVQVWLSRVEAVKTETDELIRRSS 92 (680)
Q Consensus 30 ~~~~~~~~L~~~l~~l~a~~~~~~~~l~~ae~~~~~~~~~v~~Wl~~v~~~~~d~ed~ld~~~ 92 (680)
.++..++.|+.+.+.-..--......+..|+.+.......+...-++++-+..|+|+.-+.+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555556666666655567777777788888777777666553
Done!