Citrus Sinensis ID: 041119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MTEWNSSEADSNNSPSSSGSSSLTNPPTGKPVTSDPDPTPTPDAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHcc
Coil and Loop (DISEMBL)
mtewnsseadsnnspsssgsssltnpptgkpvtsdpdptptpdaakkqkkrprddskhpvyrgVRMRAWGKWVSEIreprkksriwlgtfstpemAARAHDVAALSIKGASAIlnfpklagslprpaskspRDVQAAAAKAASmeifdnplpsishsssssslssssssptstptsssssssplvvpsdvstatpeELSEIVelpslgasydessesgndfvfvdsswydynydynyyynieeegecfnfmnndsmqvqnsssggaitAGFESLLWQH
Flexible Loop (DISEMBL)
mtewnsseadsnnspsssgsssltnpptgkpvtsdpdptptpdaakkqkkrprddskhpvyrgvrmrawgkwvseireprkksriwlgTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTstptsssssssplvvPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Low Complexity Region (SEG)
MTEWnsseadsnnspsssgsssltnPPTGKpvtsdpdptptpdAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNplpsishsssssslssssssptstptsssssssplvvpsdvsTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWydynydynyyynIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Disordered region (IsUnstruct)
***********************************************************VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK*****************************************************************************************************DFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMN**************************
Disordered Region (DISOPRED)
*************************************************************RGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPR***********AAA*************************************************************IVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Disordered Region (DISEMBL)
**********************************************************PVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGS******************AASMEIFDNPLP********************************************ELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Disordered Region (DISPRO)
********************************************************KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPR*************AK**********************************************************SEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEWNSSEADSNNSPSSSGSSSLTNPPTGKPVTSDPDPTPTPDAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q9LYD3	236	Dehydration-responsive el	yes	no	0.629	0.741	0.614	2e-50
Q39127	218	Ethylene-responsive trans	no	no	0.593	0.756	0.617	5e-48
Q9M080	221	Ethylene-responsive trans	no	no	0.715	0.900	0.548	5e-45
O80654	244	Ethylene-responsive trans	no	no	0.676	0.770	0.581	2e-39
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.341	0.322	0.726	2e-37
Q9LU18	236	Ethylene-responsive trans	no	no	0.615	0.724	0.477	1e-36
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.431	0.618	0.604	2e-34
Q9SUK8	179	Ethylene-responsive trans	no	no	0.320	0.497	0.764	1e-33
Q9M210	256	Ethylene-responsive trans	no	no	0.388	0.421	0.669	2e-33
Q52QU1	225	Ethylene-responsive trans	no	no	0.532	0.657	0.601	8e-33

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/197 (61%), Positives = 136/197 (69%), Gaps = 22/197 (11%)

Query: 43  DAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDV 102
           + ++K+ KR RD  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDV
Sbjct: 33  EQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDV 92

Query: 103 AALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSS 162
           AALSIKG +AILNFP+LA S PRP S SPRD+Q AA KAA ME      P+ S SSS+SS
Sbjct: 93  AALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHME------PTTSFSSSTSS 146

Query: 163 LSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYD-ESSESGNDF 221
            SS SS+ +                 D+S    EEL EIVELPSLGASYD +S+  GN+F
Sbjct: 147 SSSLSSTSSLESLVLV---------MDLSRTESEELGEIVELPSLGASYDVDSANLGNEF 197

Query: 222 VFVDSSWYDYNYDYNYY 238
           VF DS       DY  Y
Sbjct: 198 VFYDS------VDYCLY 208

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  191 bits (485), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 131/183 (71%), Gaps = 18/183 (9%)

Query: 46  KKQKKRP-RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 104
           +++KK+P +D  KHPVYRGVR R WGKWVSEIREPRKKSRIWLGTF +PEMAARAHDVAA
Sbjct: 20  EEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAA 79

Query: 105 LSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLS 164
           LSIKGASAILNFP LAGS PRP+S SPRD+Q AA KAA ME   +   S S + SSS  S
Sbjct: 80  LSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSSSSLTFSSSQSS 139

Query: 165 SSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFV 224
           SS  S  S+  + S                 EEL EIVELPSLG+SYD  ++ GN+F+F 
Sbjct: 140 SSLESLVSSSATGS-----------------EELGEIVELPSLGSSYDGLTQLGNEFIFS 182

Query: 225 DSS 227
           DS+
Sbjct: 183 DSA 185

Putative transcriptional activator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  181 bits (459), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/206 (54%), Positives = 137/206 (66%), Gaps = 7/206 (3%)

Query: 50  KRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKG 109
           K  ++++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA+SIKG
Sbjct: 8   KEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKG 67

Query: 110 ASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSS 169
            SAILNFP+L+  LPRP S SPRDV+AAA KAA M+       S + +S +++ +  S S
Sbjct: 68  TSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSNKMSES 127

Query: 170 PTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWY 229
             S  T S SSSS   V S   +   ++L EIV+LPSLG S +ES    N+FV  D S  
Sbjct: 128 SESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES----NEFVIFD-SLE 182

Query: 230 DYNYDYNYYYNIEEEGECFNFMNNDS 255
           D  Y   +    EE  E F + NNDS
Sbjct: 183 DLVYMPRWLSGTEE--EVFTYNNNDS 206

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80654|ERF37_ARATH Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 145/203 (71%), Gaps = 15/203 (7%)

Query: 49  KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIK 108
           KKR R D   P YRGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD AAL+IK
Sbjct: 34  KKRVRSD---PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIK 90

Query: 109 GASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSS 168
           G SA+LNFP+LA  LPRPAS SPRDVQAAAA AA+M+   +   S    S  +++ + + 
Sbjct: 91  GTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPS--SSSLVVSDPTTVIAPAE 148

Query: 169 SPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSS- 227
           +  S+ + S+ +SS L   S+ + +T EELSEIVELPSL  SYDES    ++FV+VDS+ 
Sbjct: 149 TQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSYDESL---SEFVYVDSAY 205

Query: 228 -----WYDYNYDYNYYYNIEEEG 245
                WY  N  Y++YY+ +E G
Sbjct: 206 PPSSPWY-INNCYSFYYHSDENG 227

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 81/95 (85%)

Query: 48  QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSI 107
           ++++     KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+I
Sbjct: 87  KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query: 108 KGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 142
           KG +A LNFPKLAG LPRP + SP+D+QAAA+ AA
Sbjct: 147 KGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 120/199 (60%), Gaps = 28/199 (14%)

Query: 57  KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 116
           +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL+IKG+SA+LNF
Sbjct: 57  QHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNF 116

Query: 117 PKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTS 176
           P+LA   PRPAS SP D+Q AAA+AA+                   L     +P + P+S
Sbjct: 117 PELASLFPRPASSSPHDIQTAAAEAAA-------------MVVEEKLLEKDEAPEAPPSS 163

Query: 177 SSSSSSPLVVPSDVSTATPEELSEIVELPSL-GASYDESSESGNDFVFVD--SSWYDYNY 233
            SS  +         +   E L +IVELP++   SYDES  S  D  + +    W  Y  
Sbjct: 164 ESSYVA-------AESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDCWV-YPP 215

Query: 234 DYNYYYNIEEEGECFNFMN 252
             ++Y  I E    FNF+ 
Sbjct: 216 VMDFYEEISE----FNFVE 230

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 14/134 (10%)

Query: 56  SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILN 115
           SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTFST EMAARAHDVAAL+IKG SA LN
Sbjct: 40  SKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLN 99

Query: 116 FPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPT 175
           FP+LA  LPRPAS  P+D+QAAAA AA+    D              +   +SSP+ +PT
Sbjct: 100 FPELAYHLPRPASADPKDIQAAAAAAAAAVAID--------------MDVETSSPSPSPT 145

Query: 176 SSSSSSSPLVVPSD 189
            + +SS  ++  SD
Sbjct: 146 VTETSSPAMIALSD 159

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 74/89 (83%)

Query: 47  KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALS 106
           K K   +  SK P +RGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAL+
Sbjct: 26  KTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALA 85

Query: 107 IKGASAILNFPKLAGSLPRPASKSPRDVQ 135
           IKG SA LNFP+LA  LPRPAS  P+D+Q
Sbjct: 86  IKGGSAHLNFPELAYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 86/109 (78%), Gaps = 1/109 (0%)

Query: 44  AAKKQKKRPRDDSKHPV-YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDV 102
             K++K    DD+K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDV
Sbjct: 53  GGKRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDV 112

Query: 103 AALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPL 151
           AAL+IKG S  LNFP+L+G LPRP S SP+D+QAAA KAA    +  P+
Sbjct: 113 AALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAAEATTWHKPV 161

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU1|ERF42_ARATH Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1

 Score =  140 bits (354), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 89/148 (60%), Positives = 104/148 (70%)

Query: 60  VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 119
           VYRG RMR+WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAALSIKG+SAILNFP+L
Sbjct: 25  VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPEL 84

Query: 120 AGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSS 179
           A  LPRP S S +D+QAAAA+AA M+    P      S+   +   +      + +SSS+
Sbjct: 85  ADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTRCDTEKIEKWSSSSSSA 144

Query: 180 SSSPLVVPSDVSTATPEELSEIVELPSL 207
           SSS     S  S+    EL +IVELPSL
Sbjct: 145 SSSSSSSSSSSSSMLSGELGDIVELPSL 172

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
255550908	270	Transcriptional factor TINY, putative [R	0.640	0.659	0.679	2e-52
359484553	266	PREDICTED: dehydration-responsive elemen	0.823	0.860	0.570	1e-51
224114549	288	AP2/ERF domain-containing transcription	0.830	0.802	0.558	1e-51
255546373	279	Transcriptional factor TINY, putative [R	0.794	0.792	0.568	2e-51
292668955	278	AP2 domain class transcription factor [M	0.830	0.830	0.576	1e-50
224142189	295	AP2/ERF domain-containing transcription	0.834	0.786	0.509	2e-49
297811277	236	hypothetical protein ARALYDRAFT_487996 [	0.600	0.707	0.663	2e-49
292668975	252	AP2 domain class transcription factor [M	0.719	0.793	0.553	9e-49
15239113	236	dehydration-responsive element-binding p	0.629	0.741	0.614	1e-48
449501287	250	PREDICTED: dehydration-responsive elemen	0.730	0.812	0.538	5e-48

>gi|255550908|ref|XP_002516502.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544322|gb|EEF45843.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 142/181 (78%), Gaps = 3/181 (1%)

Query: 47  KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALS 106
           K+ KR RD +KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALS
Sbjct: 39  KKIKRIRDTNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALS 98

Query: 107 IKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSS 166
           IKG SAILNFP+LA SLPRPAS +PRDVQ AAAKAA M+ FD  +   + ++  ++ +++
Sbjct: 99  IKGNSAILNFPELADSLPRPASLAPRDVQIAAAKAAQMDTFDKKITDSTAATPMTATTTT 158

Query: 167 SSSPTSTPTSSSSSSSPLVVPSDVSTATP-EELSEIVELPSLGASYDESSESGNDFVFVD 225
           SSS  S  +S S  SS +    D+ST  P EELSEIVELPSLG SY ESSE  +DFV+VD
Sbjct: 159 SSSSLSLSSSDSCLSSLVSA-MDLSTTGPEEELSEIVELPSLGTSY-ESSELRSDFVYVD 216

Query: 226 S 226
           S
Sbjct: 217 S 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484553|ref|XP_002280555.2| PREDICTED: dehydration-responsive element-binding protein 3-like [Vitis vinifera]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 154/270 (57%), Positives = 178/270 (65%), Gaps = 41/270 (15%)

Query: 23  LTNPPTGKPVTSDPDPTPTPDAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKK 82
           + NPP  +  TSDPD        +++ KR RD SKHPVYRGVRMR WGKWVSEIREPRKK
Sbjct: 24  IQNPPAKRSKTSDPD--------QERPKRGRDSSKHPVYRGVRMRTWGKWVSEIREPRKK 75

Query: 83  SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 142
           SRIWLGTFSTPEMAARAHDVAALSIKG SAILNFP+LA SLPRPAS SPRDVQAAAAKAA
Sbjct: 76  SRIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPELASSLPRPASSSPRDVQAAAAKAA 135

Query: 143 SMEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVS------TATPE 196
           SME  +    S S SSSSSSL S S SP+ +P+SSSSS +     S  S       +TPE
Sbjct: 136 SMEHLNPSSSSSSSSSSSSSLPSPSPSPSPSPSSSSSSMAITSSSSMSSLISTSDASTPE 195

Query: 197 ELSEIVELPSLGASYDESSESGNDFVFVDSS--------WYDYNYDYNYYYNIEEEGECF 248
           EL EIVELPSLG S+ E+ ESGNDFVFVDS         W     D  Y+          
Sbjct: 196 ELGEIVELPSLGTSF-ETPESGNDFVFVDSVDGWLYPPPWLHTADDCGYF---------- 244

Query: 249 NFMNNDSMQVQNSSSGGAITAGFESLLWQH 278
               ++ + + ++     I   FE+LLW++
Sbjct: 245 ----SEHLPITDT----LIPTSFEALLWEY 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114549|ref|XP_002332357.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372069|gb|ABQ62966.1| TINY-like protein [Populus trichocarpa] gi|222832078|gb|EEE70555.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 147/263 (55%), Positives = 177/263 (67%), Gaps = 32/263 (12%)

Query: 36  PDPTPTPDAAK--KQKKRPRD-----DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLG 88
           P+P   PD  K  ++ KRPR+     +SKHPV+RGVRMR WGKWVSEIREPRKK+RIWLG
Sbjct: 38  PNPVSKPDPEKNLRKPKRPRETNSSNNSKHPVFRGVRMRTWGKWVSEIREPRKKNRIWLG 97

Query: 89  TFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI-- 146
           TFSTPEMAARAHDVAALSIKG SAILNFP LAGSLPRPAS SPRDVQAAAAKAASM+   
Sbjct: 98  TFSTPEMAARAHDVAALSIKGNSAILNFPGLAGSLPRPASNSPRDVQAAAAKAASMDFNS 157

Query: 147 ----------FDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPE 196
                      D    + + ++S+++ SSSS    S+ +SSSSSSS + V SDV  ATPE
Sbjct: 158 TVTTVTTNVCNDENNSNNNSTASNNNGSSSSQMTQSSSSSSSSSSSTVRVTSDV--ATPE 215

Query: 197 ELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYY-YNIEEEGECFNFMNNDS 255
           ELSEIVELPSL  SY+ES E    FV    SW   N  + Y  Y ++  G    + ++  
Sbjct: 216 ELSEIVELPSLETSYEESPE----FVLFGDSWPYINQSWCYEDYGVKSNG----YFSDQY 267

Query: 256 MQVQNSSSGGAITAGFESLLWQH 278
           + +        IT+GFE+LLW+H
Sbjct: 268 LSI--IPENNVITSGFETLLWEH 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546373|ref|XP_002514246.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223546702|gb|EEF48200.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/248 (56%), Positives = 165/248 (66%), Gaps = 27/248 (10%)

Query: 40  PTPDAAKKQKKRPRDDS-KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAAR 98
           P P+   ++ KR RD S KHPVYRGVRMR WGKWVSEIREPRKK+RIWLGTFSTPEMAAR
Sbjct: 46  PGPEENPRKPKRARDSSNKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFSTPEMAAR 105

Query: 99  AHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI--------FDNP 150
           AHDVAALSIKG SAILNFP+LAG+LPRPAS SPRDVQAAAAKAASM+           N 
Sbjct: 106 AHDVAALSIKGNSAILNFPELAGTLPRPASNSPRDVQAAAAKAASMDFNIGNDDNSNSNN 165

Query: 151 LPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGAS 210
               +H +SSSS  + SSS + T    +S+SSP  V      ATPEELS+IVELPSLG S
Sbjct: 166 ENDNNHKTSSSSTVTQSSSSSITTAEVTSTSSPYNV------ATPEELSQIVELPSLGTS 219

Query: 211 YDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGECF--NFMNNDSMQVQNSSSGGAIT 268
           ++ES E  ++FVF D  W    Y+   +Y    E  C   N   +D + +   S    I 
Sbjct: 220 FEESPELRDEFVFSDDPWL---YNNPAWY----EDYCCGGNGYFSDQLSLMPES---VIN 269

Query: 269 AGFESLLW 276
           +GFE  LW
Sbjct: 270 SGFEFFLW 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668955|gb|ADE41132.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 147/255 (57%), Positives = 175/255 (68%), Gaps = 24/255 (9%)

Query: 31  PVTSDPDPTPTPDAAKKQKKRPRD-DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGT 89
           PV SD   +P PD  +K+ KR R+  SKHPVYRGVRMR WGKWVSEIREPRKK+RIWLGT
Sbjct: 41  PVRSD---SPGPD--QKRAKRVRETSSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGT 95

Query: 90  FSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDN 149
           FSTPEMAARAHDVAA++IKG SAILNFP LAGSLPRP S SPRD+QAAAAKAASME  + 
Sbjct: 96  FSTPEMAARAHDVAAMTIKGNSAILNFPGLAGSLPRPDSNSPRDIQAAAAKAASMETLNP 155

Query: 150 PLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGA 209
           PL      SSSSS + S SS +S+   ++S+S            TPEEL EIV+LPSLG 
Sbjct: 156 PLLPPPSHSSSSSSALSQSSSSSSMVGTTSTSG--------DAGTPEELGEIVKLPSLGT 207

Query: 210 SYDESSESGNDFVFVDSSWYDYNYDYNYYYN--IEEEGECFNFMN----NDSMQVQNSSS 263
           SY ES+ESG++FVF DS    + Y   +++N  +EEE    N +N    +D M +  S  
Sbjct: 208 SY-ESAESGSEFVFADSV-EGWLYPPPWWHNSYLEEENGYNNLINSIIRDDQMLM--SEP 263

Query: 264 GGAITAGFESLLWQH 278
             A   G E+ LWQH
Sbjct: 264 PAAECVGVEAFLWQH 278

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142189|ref|XP_002324441.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|134038602|gb|ABO48369.1| TINY-like protein 2 [Populus trichocarpa] gi|222865875|gb|EEF03006.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/271 (50%), Positives = 169/271 (62%), Gaps = 39/271 (14%)

Query: 36  PDPT--PTPDAAKKQKKRPRDDS----------KHPVYRGVRMRAWGKWVSEIREPRKKS 83
           P+P   P P+   ++ KRPR+ +          KHPV+RGVRMR WGKWVSEIREPRKK+
Sbjct: 36  PNPVSKPDPEENPRKPKRPRESTSTSSNSNSNSKHPVFRGVRMRTWGKWVSEIREPRKKN 95

Query: 84  RIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 143
           RIWLGTFSTPEMAARAHDVAALSIKG SAILNFPKLAGSLPRPAS SPRDVQAAAAKAAS
Sbjct: 96  RIWLGTFSTPEMAARAHDVAALSIKGNSAILNFPKLAGSLPRPASNSPRDVQAAAAKAAS 155

Query: 144 MEIFDNPLPSISHSSSSSSLSSSSSSPTSTPTSSSSSSSPLVV---------------PS 188
           M+   N +PS          +S+S+  T++  + SSSS                    PS
Sbjct: 156 MDF--NIVPSAPTKVCDDENNSNSNDSTASNNNRSSSSLVTQSSSSPSSSSTAEVTSSPS 213

Query: 189 DVSTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSWYDYNYDYNYYYNIEEEGEC- 247
           DV  ATPEELSEIVELPSL  + +E  E    FV +  SW  YN + ++Y   E+ G   
Sbjct: 214 DV--ATPEELSEIVELPSLETNLEEFPE----FVLLGDSW-PYNINQSWY--CEDYGAVG 264

Query: 248 FNFMNNDSMQVQNSSSGGAITAGFESLLWQH 278
             + ++  + +   S+    T  FE+ LW+H
Sbjct: 265 TGYFSDQYLSIIPESNVITTTGAFETSLWEH 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811277|ref|XP_002873522.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata] gi|297319359|gb|EFH49781.1| hypothetical protein ARALYDRAFT_487996 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/184 (66%), Positives = 134/184 (72%), Gaps = 17/184 (9%)

Query: 47  KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALS 106
           K+ KR  D  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALS
Sbjct: 38  KKTKRVIDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALS 97

Query: 107 IKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSSS 166
           IKG SAILNFP+LA S PRP S SPRD+Q AA KAA ME      P+ S SSS+SS SSS
Sbjct: 98  IKGTSAILNFPELADSFPRPVSLSPRDIQTAALKAAHME------PTTSFSSSTSSSSSS 151

Query: 167 SSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYD-ESSESGNDFVFVD 225
           S+S   +          LV+  D+S    EEL EIVELPSLGASYD +S+  GN+FVF D
Sbjct: 152 STSSLES----------LVLVMDLSRTESEELGEIVELPSLGASYDFDSANLGNEFVFSD 201

Query: 226 SSWY 229
           S  Y
Sbjct: 202 SVDY 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668975|gb|ADE41142.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/233 (55%), Positives = 146/233 (62%), Gaps = 33/233 (14%)

Query: 46  KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAL 105
           K   KR RD SKHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAAL
Sbjct: 51  KNNAKRVRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAL 110

Query: 106 SIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSSLSS 165
           SIKG SAILNFP+L+ SLPRP S +PRDVQAAA KAA M  FD+         SSSS SS
Sbjct: 111 SIKGNSAILNFPELSNSLPRPVSLAPRDVQAAATKAAQMHQFDSIRSMSPSILSSSSSSS 170

Query: 166 SSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGNDFVFVD 225
            SS  ++    S+ S               +ELSEIVELPSL  SY ES+E  ++FVFV+
Sbjct: 171 LSSLVSAIDNLSTES---------------DELSEIVELPSL--SY-ESTELRSEFVFVE 212

Query: 226 SSWYDYNYDYNYYYNIEEEGECFNFMNNDSMQVQNSSSGGAITAGFESLLWQH 278
           S    + Y   +   + EE EC                G A + GFE LLW +
Sbjct: 213 SE-DQWVYPPPWLQRV-EEFECGEL-------------GAASSVGFEGLLWDY 250

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239113|ref|NP_196720.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana] gi|75264381|sp|Q9LYD3.1|DREB3_ARATH RecName: Full=Dehydration-responsive element-binding protein 3; AltName: Full=Protein TINY 2 gi|7573416|emb|CAB87719.1| transcription factor like protein [Arabidopsis thaliana] gi|48479294|gb|AAT44918.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana] gi|61104875|gb|AAX38232.1| DREB3 [Arabidopsis thaliana] gi|332004315|gb|AED91698.1| dehydration-responsive element-binding protein 3 [Arabidopsis thaliana]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/197 (61%), Positives = 136/197 (69%), Gaps = 22/197 (11%)

Query: 43  DAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDV 102
           + ++K+ KR RD  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDV
Sbjct: 33  EQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDV 92

Query: 103 AALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSSSSS 162
           AALSIKG +AILNFP+LA S PRP S SPRD+Q AA KAA ME      P+ S SSS+SS
Sbjct: 93  AALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHME------PTTSFSSSTSS 146

Query: 163 LSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYD-ESSESGNDF 221
            SS SS+ +                 D+S    EEL EIVELPSLGASYD +S+  GN+F
Sbjct: 147 SSSLSSTSSLESLVLV---------MDLSRTESEELGEIVELPSLGASYDVDSANLGNEF 197

Query: 222 VFVDSSWYDYNYDYNYY 238
           VF DS       DY  Y
Sbjct: 198 VFYDS------VDYCLY 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501287|ref|XP_004161329.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Cucumis sativus]

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/245 (53%), Positives = 163/245 (66%), Gaps = 42/245 (17%)

Query: 46  KKQKKRPRDD------SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARA 99
           +K+ KRPR++      SKHPV+RGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARA
Sbjct: 36  RKRLKRPRENNNNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARA 95

Query: 100 HDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNPLPSISHSSS 159
           HDVAAL+IKG SAILNFP+LA   PRPAS SPRDVQAAAAKAASMEI             
Sbjct: 96  HDVAALTIKGTSAILNFPELAHQFPRPASTSPRDVQAAAAKAASMEI------------- 142

Query: 160 SSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIVELPSLGASYDESSESGN 219
                  +   +S+ ++S+SSSS     + +  ++PEEL+EIVELPSLG SY E++E GN
Sbjct: 143 ------PTPPLSSSSSTSTSSSSSSSSSASLCPSSPEELTEIVELPSLGTSY-ETAELGN 195

Query: 220 DFVFVDS--SW-YDYNYDYNYYYN---IEEEGECFNFMNNDSMQVQNSSSGGAITAGFES 273
           +FVFVDS   W Y Y + YN   N   +EE  E +     D + + + +         ++
Sbjct: 196 EFVFVDSVEGWLYSYPW-YNRVSNAEQVEELQEDYGLFFKDQILMADYT---------DT 245

Query: 274 LLWQH 278
            LWQ+
Sbjct: 246 FLWQN 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.359	0.458	0.801	2e-49
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.600	0.707	0.573	4.8e-46
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.618	0.704	0.572	2.4e-44
TAIR|locus:2134128	221	AT4G32800 [Arabidopsis thalian	0.733	0.923	0.478	1.4e-41
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.352	0.415	0.688	5.1e-39
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.370	0.530	0.715	1.5e-35
TAIR|locus:2043495	225	ESE2 "ethylene and salt induci	0.597	0.737	0.491	4e-35
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.341	0.322	0.726	6.5e-35
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.348	0.378	0.734	1.1e-34
TAIR|locus:2129111	179	AT4G16750 [Arabidopsis thalian	0.363	0.564	0.722	1.1e-34

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 81/101 (80%), Positives = 89/101 (88%)

Query:    46 KKQKKRP-RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 104
             +++KK+P +D  KHPVYRGVR R WGKWVSEIREPRKKSRIWLGTF +PEMAARAHDVAA
Sbjct:    20 EEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAA 79

Query:   105 LSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 145
             LSIKGASAILNFP LAGS PRP+S SPRD+Q AA KAA ME
Sbjct:    80 LSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHME 120

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 105/183 (57%), Positives = 114/183 (62%)

Query:    45 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 104
             ++K+ KR RD  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAA
Sbjct:    35 SEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAA 94

Query:   105 LSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXX 164
             LSIKG +AILNFP+LA S PRP S SPRD+Q AA KAA ME                   
Sbjct:    95 LSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHME---------------PTTS 139

Query:   165 XXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYD-ESSESGNDFVF 223
                                            EEL EIVELPSLGASYD +S+  GN+FVF
Sbjct:   140 FSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF 199

Query:   224 VDS 226
              DS
Sbjct:   200 YDS 202

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 103/180 (57%), Positives = 114/180 (63%)

Query:    49 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIK 108
             KKR R D   P YRGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD AAL+IK
Sbjct:    34 KKRVRSD---PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIK 90

Query:   109 GASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXXXXXX 168
             G SA+LNFP+LA  LPRPAS SPRDVQAAAA AA+M+   +                   
Sbjct:    91 GTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQ 150

Query:   169 XXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSW 228
                                    TA  EELSEIVELPSL  SYDES    ++FV+VDS++
Sbjct:   151 LSSSSYSTCTSSSLSPSSEEAASTA--EELSEIVELPSLETSYDESL---SEFVYVDSAY 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2134128 AT4G32800 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 102/213 (47%), Positives = 119/213 (55%)

Query:    44 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVA 103
             A     K  ++++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVA
Sbjct:     2 ADSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVA 61

Query:   104 ALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXX 163
             A+SIKG SAILNFP+L+  LPRP S SPRDV+AAA KAA M+ FD               
Sbjct:    62 AMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMD-FDTTAFRSDTETSETTT 120

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAT-PEELSEIVELPSLGASYDESSESGNDFV 222
                                          +T  ++L EIV+LPSLG S +ES    N+FV
Sbjct:   121 SNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES----NEFV 176

Query:   223 FVDSSWXXXXXXXXXXXXIEEEGECFNFMNNDS 255
               DS               EEE   F + NNDS
Sbjct:   177 IFDSL-EDLVYMPRWLSGTEEE--VFTYNNNDS 206

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
 Identities = 73/106 (68%), Positives = 87/106 (82%)

Query:    49 KKRPRDDS--------KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAH 100
             +KR RD S        +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAH
Sbjct:    41 RKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAH 100

Query:   101 DVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI 146
             DVAAL+IKG+SA+LNFP+LA   PRPAS SP D+Q AAA+AA+M +
Sbjct:   101 DVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVV 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 78/109 (71%), Positives = 87/109 (79%)

Query:    46 KKQKKRPRDD------SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARA 99
             K +KKR +DD      SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTFST EMAARA
Sbjct:    24 KPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARA 83

Query:   100 HDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFD 148
             HDVAAL+IKG SA LNFP+LA  LPRPAS  P+D+QAAAA AA+    D
Sbjct:    84 HDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAID 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2043495 ESE2 "ethylene and salt inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 84/171 (49%), Positives = 100/171 (58%)

Query:    44 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVA 103
             ++KK+K++ ++     VYRG RMR+WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVA
Sbjct:    12 SSKKKKEKTKEKG---VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVA 68

Query:   104 ALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXX 163
             ALSIKG+SAILNFP+LA  LPRP S S +D+QAAAA+AA M+                  
Sbjct:    69 ALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDSTPLQTR 128

Query:   164 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSL--GASYD 212
                                         +    EL +IVELPSL     YD
Sbjct:   129 CDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYD 179

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 69/95 (72%), Positives = 81/95 (85%)

Query:    48 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSI 107
             ++++     KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+I
Sbjct:    87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAI 146

Query:   108 KGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 142
             KG +A LNFPKLAG LPRP + SP+D+QAAA+ AA
Sbjct:   147 KGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/98 (73%), Positives = 83/98 (84%)

Query:    46 KKQKKRPRDDSKHPV-YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 104
             K++K    DD+K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAA
Sbjct:    55 KRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAA 114

Query:   105 LSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 142
             L+IKG S  LNFP+L+G LPRP S SP+D+QAAA KAA
Sbjct:   115 LAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2129111 AT4G16750 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/101 (72%), Positives = 83/101 (82%)

Query:    45 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 104
             + K K   +  SK P +RGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA
Sbjct:    24 SSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAA 83

Query:   105 LSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 145
             L+IKG SA LNFP+LA  LPRPAS  P+D+Q AAA AA+++
Sbjct:    84 LAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVD 124

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYD3	DREB3_ARATH	No assigned EC number	0.6142	0.6294	0.7415	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-32
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14
PHA02638	417	PHA02638, PHA02638, CC chemokine receptor-like pro	1e-04

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (292), Expect = 2e-33
 Identities = 38/57 (66%), Positives = 43/57 (75%)

Query: 61  YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 117
           YRGVR R WGKWV+EIR+P K  R+WLGTF T E AARA+D AA   +G SA LNFP
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  112 bits (283), Expect = 4e-32
 Identities = 39/57 (68%), Positives = 46/57 (80%)

Query: 61  YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 117
           YRGVR R WGKWV+EIR+P    RIWLGTF T E AARA+D AAL ++G+SA+LNFP
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 4/54 (7%)

Query: 59  PVYRGVRMR-AWGKWVSEIREP--RKKSRIWLGTFSTPEMAARAHDVAALSIKG 109
             Y+GVR    WG+WV+EIR+P  +KK R  LGTF T E AARA   A L ++G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 157 SSSSSSLSSSSSSPTSTPTSSSSSSSPLVVPSDVSTATPEELSEIV--ELPSLGASYDES 214
            +SS++LSS      S+ T S ++   +    D S +     +EI+  E+P+  +    S
Sbjct: 2   DNSSTTLSSII---LSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNS 58

Query: 215 SESGNDFVFVDSSWYDYNYDYNYYYNI 241
           + S +      S  YDY Y+ N  Y +
Sbjct: 59  NSSSSSSSSSSSITYDYEYENNITYEL 85

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.83
PHA00280	121	putative NHN endonuclease	99.82
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.81
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.11

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.83  E-value=9.2e-21  Score=138.27  Aligned_cols=61  Identities=64%  Similarity=1.111  Sum_probs=57.3

Q ss_pred             CceeEEEeCCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041119           59 PVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL  119 (278)
Q Consensus        59 S~YRGVr~r~~GKW~AeI~~~~~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~lNFP~~  119 (278)
                      |+||||+++++|||+|+|+++..++++|||+|+|+||||+|||+|+++++|.++.+|||+.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5799999988899999999965599999999999999999999999999999999999973

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.82  E-value=2.6e-20  Score=155.19  Aligned_cols=88  Identities=11%  Similarity=0.106  Sum_probs=82.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCchHhhccCCCCCCCCCCceeEEEeC-CCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHH
Q 041119           23 LTNPPTGKPVTSDPDPTPTPDAAKKQKKRPRDDSKHPVYRGVRMR-AWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD  101 (278)
Q Consensus        23 l~~~~tG~p~dNr~~NlR~~t~~~n~rnr~~~s~~~S~YRGVr~r-~~GKW~AeI~~~~~~kri~LGtFdT~EeAArAYD  101 (278)
                      .++|.+|++.+|+++|||.+++.+|.+|+...++++++||||.++ ..|||+|+|+.  +||+++||.|+++|+|+.||+
T Consensus        31 ~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~  108 (121)
T PHA00280         31 YIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR  108 (121)
T ss_pred             EEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH
Confidence            589999999999999999999999999999888999999999975 57999999999  999999999999999999997


Q ss_pred             HHHHHhcCCCCC
Q 041119          102 VAALSIKGASAI  113 (278)
Q Consensus       102 ~AAikl~G~~A~  113 (278)
                       ++.+++|++|.
T Consensus       109 -~~~~lhGeFa~  119 (121)
T PHA00280        109 -TRRELHGQFAR  119 (121)
T ss_pred             -HHHHHhhcccc
Confidence             77899999875

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.81  E-value=6.2e-20  Score=135.60  Aligned_cols=62  Identities=61%  Similarity=1.025  Sum_probs=58.7

Q ss_pred             ceeEEEeCCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 041119           60 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG  121 (278)
Q Consensus        60 ~YRGVr~r~~GKW~AeI~~~~~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~lNFP~~~~  121 (278)
                      +||||+++++|||+|+|+++.+++++|||+|+|+||||+|||.|+++++|..+.+|||...+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            49999998889999999999899999999999999999999999999999999999998654

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.11  E-value=1.3e-10  Score=82.80  Aligned_cols=52  Identities=31%  Similarity=0.476  Sum_probs=45.2

Q ss_pred             CceeEEEeC-CCCcEEEEEecCCC---CeEeecCCCCCHHHHHHHHHHHHHHhcCC
Q 041119           59 PVYRGVRMR-AWGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKGA  110 (278)
Q Consensus        59 S~YRGVr~r-~~GKW~AeI~~~~~---~kri~LGtFdT~EeAArAYD~AAikl~G~  110 (278)
                      |+|+||+++ ..++|+|+|++...   +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            579999886 57999999998421   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		3e-13
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-13

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 56  SKHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAIL 114
           +K   YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+L
Sbjct: 1   AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 115 NFP 117
           NFP
Sbjct: 61  NFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 57  KHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILN 115
           KH  YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LN
Sbjct: 1   KH--YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 58
Query: 116 FP 117
           FP
Sbjct: 59  FP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-30

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  108 bits (271), Expect = 2e-30
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 61  YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 117
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	97.83
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.11

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=1.2e-24  Score=160.99  Aligned_cols=60  Identities=57%  Similarity=0.983  Sum_probs=57.0

Q ss_pred             ceeEEEeCCCCcEEEEEecCCC-CeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 041119           60 VYRGVRMRAWGKWVSEIREPRK-KSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL  119 (278)
Q Consensus        60 ~YRGVr~r~~GKW~AeI~~~~~-~kri~LGtFdT~EeAArAYD~AAikl~G~~A~lNFP~~  119 (278)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||+|+++++|..+.+|||+.
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999999999999999874 79999999999999999999999999999999999974

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=97.83  E-value=9.8e-08  Score=81.07  Aligned_cols=76  Identities=5%  Similarity=-0.064  Sum_probs=59.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCchHhhccCCCCCCCCCCceeEEEeCCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHH
Q 041119           22 SLTNPPTGKPVTSDPDPTPTPDAAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD  101 (278)
Q Consensus        22 sl~~~~tG~p~dNr~~NlR~~t~~~n~rnr~~~s~~~S~YRGVr~r~~GKW~AeI~~~~~~kri~LGtFdT~EeAArAYD  101 (278)
                      -.++|..|++.+|+++||+.+++.+|.+++...... ..++||...+.++|.+.|..  + +.++||.|++.+|||++|.
T Consensus        71 ~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           71 LVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            478899999999999999999999998776543322 12467754334678899988  4 5678999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.11  E-value=0.28  Score=37.54  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=21.7

Q ss_pred             CCCCceeEEEeC-CCCcEEEEEecCCCCeEe
Q 041119           56 SKHPVYRGVRMR-AWGKWVSEIREPRKKSRI   85 (278)
Q Consensus        56 ~~~S~YRGVr~r-~~GKW~AeI~~~~~~kri   85 (278)
                      ..+|+|+||.+. +.+.|.|.-.+  +|+|.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            457899999886 57999999998  56543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (274), Expect = 2e-31
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 61  YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 117
           YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1e-24  Score=160.22  Aligned_cols=59  Identities=56%  Similarity=0.998  Sum_probs=55.3

Q ss_pred             ceeEEEeCCCCcEEEEEecCC-CCeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 041119           60 VYRGVRMRAWGKWVSEIREPR-KKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK  118 (278)
Q Consensus        60 ~YRGVr~r~~GKW~AeI~~~~-~~kri~LGtFdT~EeAArAYD~AAikl~G~~A~lNFP~  118 (278)
                      +||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~   61 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL   61 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCc
Confidence            499999998999999999864 56899999999999999999999999999999999995