BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041120
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 146/221 (66%), Gaps = 25/221 (11%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+PASVDWRK+GAVT VKDQGQCGSCWAFS + AVEGIN++KT KLVSLSEQELVDCD +
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD- 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR- 260
+NQGCNGG M+ AFEFI + GG+TTE +YPY + C K AV+I G+E +P
Sbjct: 61 QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPEND 120
Query: 261 ---------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGED-HGEKYWL 298
FQ YS GVF CG +L+HGV +VGYG G KYW
Sbjct: 121 ENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWT 180
Query: 299 VKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339
VKNSWG WGE GYIRM R S G+CGI M+ASYP+K+
Sbjct: 181 VKNSWGPEWGEKGYIRMER-GISDKEGLCGIAMEASYPIKK 220
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 144/223 (64%), Gaps = 28/223 (12%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++GAVT VKDQG+CGSCWAFS V +VEGIN ++TG LVSLSEQEL+DCD +
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD-TA 62
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHA---VTITGYEAIP 258
+N GC GG M+ AFE+I GG+ TE YPYR C + ++ V I G++ +P
Sbjct: 63 DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVP 122
Query: 259 ARY----------------------AFQLYSHGVFDEYCGHQLNHGVTVVGYG-EDHGEK 295
A AF YS GVF CG +L+HGV VVGYG + G+
Sbjct: 123 ANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKA 182
Query: 296 YWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
YW VKNSWG SWGE GYIR+ ++S +S G+CGI M+ASYPVK
Sbjct: 183 YWTVKNSWGPSWGEQGYIRVEKDSGASG-GLCGIAMEASYPVK 224
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 136/219 (62%), Gaps = 24/219 (10%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP VDWR GAV +KDQGQCGSCWAFS +AAVEGINK+ TG L+SLSEQELVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+GC+GG+M F+FI GG+ TE +YPY + +C D + V+I YE +P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A Y FQ YS G+F CG ++H VT+VGYG + G YW+V
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT+WGE GY+R+ RN +G CGI +ASYPVK
Sbjct: 181 KNSWGTTWGEEGYMRIQRN--VGGVGQCGIAKKASYPVK 217
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 187/323 (57%), Gaps = 39/323 (12%)
Query: 48 GYPQKYDPQSMEER----FENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSF 103
GY Q D + ER F +W+ +++ Y + DE RF I+ N+ YID N +N S+
Sbjct: 6 GYSQ--DDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSY 63
Query: 104 KLTDNKFADLSNEEFISTYLG------YNKPYNEPRWPSVQYLGLPASVDWRKEGAVTPV 157
L N+FADLSN+EF Y+G + Y+E + + + LP +VDWRK+GAVTPV
Sbjct: 64 WLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDE-EFINEDIVNLPENVDWRKKGAVTPV 122
Query: 158 KDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEF 217
+ QG CGSCWAFSAVA VEGINK++TGKLV LSEQELVDC+ S GC GGY A E+
Sbjct: 123 RHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS--HGCKGGYPPYALEY 180
Query: 218 ITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITG------------YEAIPAR----- 260
+ K G+ YPY+ K C+ + V +G AI +
Sbjct: 181 VAK-NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVV 239
Query: 261 -----YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRM 315
FQLY G+F+ CG +++ VT VGYG+ G+ Y L+KNSWGT+WGE GYIR+
Sbjct: 240 VESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRI 299
Query: 316 ARNSPSSNIGICGILMQASYPVK 338
R +P ++ G+CG+ + YP K
Sbjct: 300 KR-APGNSPGVCGLYKSSYYPTK 321
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 135/219 (61%), Gaps = 24/219 (10%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP VDWR GAV +KDQGQCGS WAFS +AAVEGINK+ TG L+SLSEQELVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+GC+GG+M F+FI GG+ TE +YPY + +C D + V+I YE +P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A Y FQ YS G+F CG ++H VT+VGYG + G YW+V
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT+WGE GY+R+ RN +G CGI +ASYPVK
Sbjct: 181 KNSWGTTWGEEGYMRIQRN--VGGVGQCGIAKKASYPVK 217
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 177/319 (55%), Gaps = 43/319 (13%)
Query: 53 YDPQSMEERFENWLKQYSREYGSE-DEWQRRFGIYSSNVQYIDYINSQNL----SFKLTD 107
Y + ++ +E W K + ++Y ++ DE RR I+ N++YI N + +++L
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRL-IWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 108 NKFADLSNEEFISTYLGYNKPYNEPRWPSVQYLG-----LPASVDWRKEGAVTPVKDQGQ 162
N D+++EE + G P + R Y+ P SVD+RK+G VTPVK+QGQ
Sbjct: 61 NHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQ 120
Query: 163 CGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIG 222
CGSCWAFS+V A+EG K KTGKL++LS Q LVDC SEN GC GGYM AF+++ K
Sbjct: 121 CGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDGCGGGYMTNAFQYVQKNR 178
Query: 223 GVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-----------ARY---------- 261
G+ +ED YPY G+ + C + T A GY IP AR
Sbjct: 179 GIDSEDAYPYVGQEESCMYNPTG-KAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDAS 237
Query: 262 --AFQLYSHGV-FDEYC-GHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
+FQ YS GV +DE C LNH V VGYG G K+W++KNSWG +WG GYI MAR
Sbjct: 238 LTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 297
Query: 318 NSPSSNIGICGILMQASYP 336
N ++ CGI AS+P
Sbjct: 298 NKNNA----CGIANLASFP 312
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 132/219 (60%), Gaps = 24/219 (10%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP+ VDWR GAV +K QG+CG CWAFSA+A VEGINK+ TG L+SLSEQEL+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+GCNGGY+ F+FI GG+ TE++YPY ++ C D VTI YE +P
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A AF+ YS G+F CG ++H VT+VGYG + G YW+V
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSW T+WGE GY+R+ RN + G CGI SYPVK
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGA--GTCGIATMPSYPVK 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 138/220 (62%), Gaps = 26/220 (11%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP S+DWR+ GAV PVK+QG CGSCWAFS VAAVEGIN++ TG L+SLSEQ+LVDC +
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC--TT 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
N GC GG+M AF+FI GG+ +E+ YPYRG++ C + V+I YE +P
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNS-TVNAPVVSIDSYENVPSHN 119
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F C NH +TVVGYG ++ + +W+V
Sbjct: 120 EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIV 179
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339
KNSWG +WGE+GYIR RN + + G CGI ASYPVK+
Sbjct: 180 KNSWGKNWGESGYIRAERNIENPD-GKCGITRFASYPVKK 218
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 206 bits (524), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 134/219 (61%), Gaps = 27/219 (12%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP+ VDWR +GAV +K+Q QCGSCWAFSAVAAVE INK++TG+L+SLSEQELVDCD S
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGG+M AF++I GG+ T+ +YPY C+ + + V+I G++ +
Sbjct: 61 H--GCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLR--VVSINGFQRVTRNN 116
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQ YS G+F CG NHGV +VGYG G+ YW+V
Sbjct: 117 ESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIV 176
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
+NSWG +WG GYI M RN SS G+CGI SYP K
Sbjct: 177 RNSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSYPTK 214
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 177/322 (54%), Gaps = 40/322 (12%)
Query: 48 GYPQKYDPQSME---ERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFK 104
GY Q D S E + FE+W+ ++++ Y + DE RF I+ N++YID N +N S+
Sbjct: 50 GYSQN-DLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYW 108
Query: 105 LTDNKFADLSNEEFISTYLGY---NKPYNEPRWPSVQYLG---LPASVDWRKEGAVTPVK 158
L N FAD+SN+EF Y G N E + V G +P VDWR++GAVTPVK
Sbjct: 109 LGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVK 168
Query: 159 DQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFI 218
+QG CGS WAFSAV+ +E I K++TG L SEQEL+DCD S GCNGGY A + +
Sbjct: 169 NQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRS--YGCNGGYPWSALQLV 226
Query: 219 TKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI--------------------- 257
+ G+ + YPY G C++ + +A G +
Sbjct: 227 AQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVL 285
Query: 258 -PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMA 316
A FQLY G+F CG++++H V VGYG + Y L++NSWGT WGE GYIR+
Sbjct: 286 EAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGENGYIRIK 341
Query: 317 RNSPSSNIGICGILMQASYPVK 338
R + +S G+CG+ + YPVK
Sbjct: 342 RGTGNS-YGVCGLYTSSFYPVK 362
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 204 bits (519), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 177/315 (56%), Gaps = 38/315 (12%)
Query: 54 DPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNL----SFKLTDNK 109
DP +++ + W K Y ++Y ++E R I+ N++++ N ++ S+ L N
Sbjct: 5 DP-TLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNH 63
Query: 110 FADLSNEEFISTYLGYNKPYNEPR---WPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSC 166
D+++EE +S P R + S LP SVDWR++G VT VK QG CG+
Sbjct: 64 LGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAA 123
Query: 167 WAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS-ENQGCNGGYMEKAFEFITKIGGVT 225
WAFSAV A+E KLKTGKLVSLS Q LVDC N+GCNGG+M AF++I G+
Sbjct: 124 WAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGID 183
Query: 226 TEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP----------------------ARY-A 262
++ YPY+ + +CQ D +K+ A T + Y +P AR+ +
Sbjct: 184 SDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPS 242
Query: 263 FQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPS 321
F LY GV+ E C +NHGV VVGYG+ +G++YWLVKNSWG ++GE GYIRMARN +
Sbjct: 243 FFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGN 302
Query: 322 SNIGICGILMQASYP 336
CGI SYP
Sbjct: 303 H----CGIASFPSYP 313
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 129/219 (58%), Gaps = 24/219 (10%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP+ VDWR GAV +K QG+CG WAFSA+A VEGINK+ +G L+SLSEQEL+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+GC+GGY+ F+FI GG+ TE++YPY ++ C VTI YE +P
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A AF+ Y+ G+F CG ++H + +VGYG + G YW+V
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSW T+WGE GY+R+ RN + G CGI SYPVK
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGA--GTCGIATMPSYPVK 217
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 170/316 (53%), Gaps = 40/316 (12%)
Query: 56 QSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNKFA 111
S+E ++ W ++R YG +E RR ++ N++ I+ N + SF + N F
Sbjct: 2 HSLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFG 60
Query: 112 DLSNEEF--ISTYLGYNKPYNEPRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAF 169
D+++EEF + L KP + + P SVDWR++G VTPVK+QGQCGS WAF
Sbjct: 61 DMTSEEFRQVMNGLQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAF 120
Query: 170 SAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDD 229
SA A+EG KTG+L+SLSEQ LVDC N+GCNGG M+ AF+++ GG+ +E+
Sbjct: 121 SATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEES 180
Query: 230 YPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYS 267
YPY + C+ + K+ G+ IP + +F Y
Sbjct: 181 YPYEATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 239
Query: 268 HGV-FDEYCGHQ-LNHGVTVVGYG----EDHGEKYWLVKNSWGTSWGEAGYIRMARNSPS 321
G+ F+ C + ++HGV VVGYG E G KYWLVKNSWG WG GY++MA++ +
Sbjct: 240 EGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRN 299
Query: 322 SNIGICGILMQASYPV 337
CGI ASYP
Sbjct: 300 H----CGIASAASYPT 311
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 130/220 (59%), Gaps = 27/220 (12%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LPA VDWR G VTPVKDQ CGSCWAFS A+EG + KTGKLVSLSEQEL+DC
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR- 260
NQ C+GG M AF+++ GG+ +ED YPY +++ C+ ++ V I G++ +P R
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRA-QSCEKVVKILGFKDVPRRS 125
Query: 261 ---------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEK--YW 297
FQ Y GVFD CG L+HGV +VGYG D K +W
Sbjct: 126 EAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFW 185
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
++KNSWGT WG GY+ MA + G CG+L+ AS+PV
Sbjct: 186 IMKNSWGTGWGRDGYMYMAMHKGEE--GQCGLLLDASFPV 223
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 40/316 (12%)
Query: 56 QSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNKFA 111
S+E ++ W ++R YG +E RR ++ N++ I+ N + SF + N F
Sbjct: 6 HSLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFG 64
Query: 112 DLSNEEFISTYLGYN--KPYNEPRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAF 169
D+++EEF G+ KP + + P SVDWR++G VTPVK+QGQCGS WAF
Sbjct: 65 DMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXWAF 124
Query: 170 SAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDD 229
SA A+EG KTG+L+SLSEQ LVDC N+GCNGG M+ AF+++ GG+ +E+
Sbjct: 125 SATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEES 184
Query: 230 YPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYS 267
YPY + C+ + K+ G+ IP + +F Y
Sbjct: 185 YPYEATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 243
Query: 268 HGV-FDEYCGHQ-LNHGVTVVGYG----EDHGEKYWLVKNSWGTSWGEAGYIRMARNSPS 321
G+ F+ C + ++HGV VVGYG E KYWLVKNSWG WG GY++MA++ +
Sbjct: 244 EGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN 303
Query: 322 SNIGICGILMQASYPV 337
CGI ASYP
Sbjct: 304 H----CGIASAASYPT 315
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 176/319 (55%), Gaps = 45/319 (14%)
Query: 55 PQSM-EERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNK 109
P+S+ +E++ + + + Y S E RR I+ NV I N++ +++ N+
Sbjct: 19 PKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQ 78
Query: 110 FADLSNEEFISTYLGYNKPYNEPRWPS---VQYLG----LPASVDWRKEGAVTPVKDQGQ 162
F D+S EEF++ Y+ K +P+ P + Y+ L ASVDWR AV+ VKDQGQ
Sbjct: 79 FGDMSKEEFLA-YVNRGKA-QKPKHPENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQ 135
Query: 163 CGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIG 222
CGS W+FS AVEG L+ G+L SLSEQ L+DC + N GC+GG+M+ AF +I
Sbjct: 136 CGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYIHDY- 194
Query: 223 GVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP----------------------AR 260
G+ +E YPY + D C+ D ++ T++GY +P A
Sbjct: 195 GIMSESAYPYEAQGDYCRFDSSQ-SVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT 253
Query: 261 YAFQLYSHGVF-DEYCGHQ-LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARN 318
Q YS G+F D+ C LNHGV VVGYG D+G+ YW++KNSWG+ WGE+GY R RN
Sbjct: 254 DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRN 313
Query: 319 SPSSNIGICGILMQASYPV 337
++ CGI ASYP
Sbjct: 314 YGNN----CGIATAASYPA 328
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 129/218 (59%), Gaps = 26/218 (11%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P S+DWR +GAVTPVK+QG CGS WAFS +A VEGINK+ TG L+ LSEQELVDCD +S
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHS- 60
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPARY- 261
GC GGY + +++ GV T YPY+ K +C+ V ITGY+ +P+
Sbjct: 61 -YGCKGGYQTTSLQYVAN-NGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 262 ---------------------AFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVK 300
FQLY GVFD CG +L+H VT VGYG G+ Y ++K
Sbjct: 119 TSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIK 178
Query: 301 NSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
NSWG +WGE GY+R+ R S +S G CG+ + YP K
Sbjct: 179 NSWGPNWGEKGYMRLKRQSGNSQ-GTCGVYKSSYYPFK 215
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 128/219 (58%), Gaps = 34/219 (15%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP +DWRK+GAVTPVK+QG CGSCWAFS V+ VE IN+++TG L+SLSEQELVDCD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--K 58
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+N GC GG A+++I GG+ T+ +YPY+ CQ V+I GY +P
Sbjct: 59 KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQ---AASKVVSIDGYNGVPFCN 115
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
+ FQ YS G+F CG +LNHGVT+VGY + YW+V
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQAN----YWIV 171
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
+NSWG WGE GYIRM R G+CGI YP K
Sbjct: 172 RNSWGRYWGEKGYIRMLR---VGGCGLCGIARLPYYPTK 207
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 134/219 (61%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVD+R++G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SE
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 59
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ K G+ +ED YPY G+ + C + T A GY IP
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPT-GKAAKCRGYREIPEGNE 118
Query: 259 -------ARY------------AFQLYSHGV-FDEYC-GHQLNHGVTVVGYGEDHGEKYW 297
AR +FQ YS GV +DE C LNH V VGYGE G K+W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHW 178
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG +WG GYI+MARN ++ CGI AS+P
Sbjct: 179 IIKNSWGENWGMGGYIKMARNKNNA----CGIANLASFP 213
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 129/219 (58%), Gaps = 34/219 (15%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP +DWRK+GAVTPVK+QG+CGSCWAFS V+ VE IN+++TG L+SLSEQ+LVDC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDC--NK 58
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+N GC GG A+++I GG+ TE +YPY+ C+ K V I GY+ +P
Sbjct: 59 KNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAK---KVVRIDGYKGVPHCN 115
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
+ FQ Y G+F CG +LNHGV +VGY +D YW+V
Sbjct: 116 ENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKD----YWIV 171
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
+NSWG WGE GYIRM R G+CGI YP K
Sbjct: 172 RNSWGRYWGEQGYIRMKR---VGGCGLCGIARLPYYPTK 207
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 122
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 182
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 120
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 120
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 216
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 133/219 (60%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P S+D+RK+G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SE
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 59
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ + G+ +ED YPY G+++ C + T A GY IP
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPT-GKAAKCRGYREIPEGNE 118
Query: 259 -------ARY------------AFQLYSHGV-FDEYCGH-QLNHGVTVVGYGEDHGEKYW 297
AR +FQ YS GV +DE C LNH V VGYG G K+W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHW 178
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG SWG GYI MARN ++ CGI AS+P
Sbjct: 179 IIKNSWGESWGNKGYILMARNKNNA----CGIANLASFP 213
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 135/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCRKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH----CGIASFPSYP 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 132/219 (60%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVD+RK+G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SE
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 58
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ K G+ +ED YPY G+ + C + T A GY IP
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPT-GKAAKCRGYREIPEGNE 117
Query: 259 -------ARY------------AFQLYSHGV-FDEYCGH-QLNHGVTVVGYGEDHGEKYW 297
AR +FQ YS GV +DE C LNH V VGYG G K+W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG +WG GYI MARN ++ CGI AS+P
Sbjct: 178 IIKNSWGENWGNKGYILMARNKNNA----CGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 132/219 (60%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVD+RK+G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SE
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ K G+ +ED YPY G+ + C + T A GY IP
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPT-GKAAKCRGYREIPEGNE 120
Query: 259 -------ARY------------AFQLYSHGV-FDEYCGH-QLNHGVTVVGYGEDHGEKYW 297
AR +FQ YS GV +DE C LNH V VGYG G K+W
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 180
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG +WG GYI MARN ++ CGI AS+P
Sbjct: 181 IIKNSWGENWGNKGYILMARNKNNA----CGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 132/219 (60%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVD+RK+G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SE
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 59
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ K G+ +ED YPY G+ + C + T A GY IP
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPT-GKAAKCRGYREIPEGNE 118
Query: 259 -------ARY------------AFQLYSHGV-FDEYCGH-QLNHGVTVVGYGEDHGEKYW 297
AR +FQ YS GV +DE C LNH V VGYG G K+W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG +WG GYI MARN ++ CGI AS+P
Sbjct: 179 IIKNSWGENWGNKGYILMARNKNNA----CGIANLASFP 213
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 130/218 (59%), Gaps = 30/218 (13%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P S+DWR++GAVTPVK+Q CGSCWAFS VA +EGINK+ TG+L+SLSEQEL+DC+ S
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRS- 60
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
GC+GGY + +++ GV TE +YPY K RC+ K V ITGY+ +PA
Sbjct: 61 -HGCDGGYQTTSLQYVVD-NGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDE 118
Query: 261 --------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVK 300
FQ Y G+++ CG +H VT VGYG+ Y L+K
Sbjct: 119 ISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT----YLLLK 174
Query: 301 NSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
NSWG +WGE GYIR+ R S S G CG+ + +P+K
Sbjct: 175 NSWGPNWGEKGYIRIKRASGRSK-GTCGVYTSSFFPIK 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 136/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLV+LS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 215
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 34/219 (15%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP VDWR +GAV P+K+QG+CGSCWAFS V VE IN+++TG L+SLSEQ+LVDC +
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDC--SK 58
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP--- 258
+N GC GGY ++A+++I GG+ TE +YPY+ C+ K V I G + +P
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK---KVVRIDGCKGVPQCN 115
Query: 259 -------------------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
+ FQ Y G+F CG +LNHGV +VGYG+D YW+V
Sbjct: 116 ENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKD----YWIV 171
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
+NSWG WGE GY RM R G+CGI YP K
Sbjct: 172 RNSWGRHWGEQGYTRMKR---VGGCGLCGIARLPFYPTK 207
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 134/220 (60%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+CWAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D + + A T Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SAYRAATCRKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH----CGIASFPSYP 215
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 143/260 (55%), Gaps = 35/260 (13%)
Query: 108 NKFADLSNEEFISTYLGYN--KPYNEPRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGS 165
N F D+++EEF G+ KP + + P SVDWR++G VTPVK+QGQCGS
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGS 62
Query: 166 CWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVT 225
CWAFSA A+EG KTG+L+SLSEQ LVDC N+GCNGG M+ AF+++ GG+
Sbjct: 63 CWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLD 122
Query: 226 TEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAF 263
+E+ YPY + C+ + K+ G+ IP + +F
Sbjct: 123 SEESYPYEATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESF 181
Query: 264 QLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
Y G+ F+ C + ++HGV VVGYG E KYWLVKNSWG WG GY++MA+
Sbjct: 182 LFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK 241
Query: 318 NSPSSNIGICGILMQASYPV 337
+ + CGI ASYP
Sbjct: 242 DRRNH----CGIASAASYPT 257
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 131/217 (60%), Gaps = 32/217 (14%)
Query: 145 SVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQ 204
SVD+RK+G VTPVK+QGQCGSCWAFS+V A+EG K KTGKL++LS Q LVDC SEN
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SEND 59
Query: 205 GCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP------ 258
GC GGYM AF+++ K G+ +ED YPY G+ + C + T A GY IP
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPT-GKAAKCRGYREIPEGNEKA 118
Query: 259 -----ARY------------AFQLYSHGV-FDEYC-GHQLNHGVTVVGYGEDHGEKYWLV 299
AR +FQ YS GV +DE C LNH V VGYG G K+W++
Sbjct: 119 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWII 178
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
KNSWG +WG GYI MARN ++ CGI AS+P
Sbjct: 179 KNSWGENWGNKGYILMARNKNNA----CGIANLASFP 211
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 135/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+ WAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 135/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+ WAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 121
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 181
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 135/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+ WAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYD-SKYRAATCSKYTELPYG 120
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 216
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 131/219 (59%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P S+D+RK+G VTPVK+QGQCGSCWAFS+V A+EG K TG L++L+ Q LVDC SE
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCV--SE 59
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
N GC GGYM AF+++ + G+ +ED YPY G+++ C + T A GY IP
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPT-GKAAKCRGYREIPEGNE 118
Query: 259 -------------------ARYAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYGEDHGEKYW 297
+ +FQ YS GV +DE C LNH V VGYG G K+W
Sbjct: 119 AALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHW 178
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
++KNSWG SWG AGYI MARN ++ CGI AS+P
Sbjct: 179 IIKNSWGESWGNAGYILMARNKNNA----CGIANLASFP 213
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 135/220 (61%), Gaps = 30/220 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR++G VT VK QG CG+ WAFSAV A+E KLKTGKLVSLS Q LVDC
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 202 -ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-- 258
N+GCNGG+M AF++I G+ ++ YPY+ + +CQ D +K+ A T + Y +P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYD-SKYRAATCSKYTELPYG 119
Query: 259 --------------------ARY-AFQLYSHGVFDE-YCGHQLNHGVTVVGYGEDHGEKY 296
AR+ +F LY GV+ E C +NHGV VVGYG+ +G++Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
WLVKNSWG ++GE GYIRMARN + CGI SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH----CGIASFPSYP 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 132/219 (60%), Gaps = 26/219 (11%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP +VDWRK+GAVTPV+ QG CGSCWAFSAVA VEGINK++TGKLV LSEQELVDC+ S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR- 260
GC GGY A E++ K G+ YPY+ K C+ + V +G +
Sbjct: 61 --HGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 261 ---------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
FQLY G+F+ CG +++H VT VGYG+ G+ Y L+
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILI 177
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT+WGE GYIR+ R +P ++ G+CG+ + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYYPTK 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 131/219 (59%), Gaps = 26/219 (11%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP +VDWRK+GAVTPV+ QG CGSCWAFSAVA VEGINK++TGKLV LSEQELVDC+ S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR- 260
GC GGY A E++ K G+ YPY+ K C+ + V +G +
Sbjct: 61 --HGCKGGYPPYALEYVAK-NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 261 ---------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
FQLY G+F+ CG ++ H VT VGYG+ G+ Y L+
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILI 177
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT+WGE GYIR+ R +P ++ G+CG+ + YP K
Sbjct: 178 KNSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYYPTK 215
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 130/223 (58%), Gaps = 32/223 (14%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWRK+G VTPVK+Q QCGSCWAFSA A+EG KTGKLVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQ-------------------TD 242
NQGCNGG+M +AF+++ + GG+ +E+ YPY ++ C+ +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 243 KTKHHAVTITGYEAI---PARYAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHG 293
K AV G ++ +FQ Y G+ F+ C + L+HGV VVGYG
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 294 EKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
KYWLVKNSWG WG GY+++A++ + CGI ASYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNH----CGIATAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 129/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGSCWAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDTGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 129/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGSCWAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDTGFVDIPKQEK 121
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 220
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 129/223 (57%), Gaps = 32/223 (14%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWRK+G VTPVK+Q QCGS WAFSA A+EG KTGKLVSLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQ-------------------TD 242
NQGCNGG+M +AF+++ + GG+ +E+ YPY ++ C+ +
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 243 KTKHHAVTITGYEAI---PARYAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHG 293
K AV G ++ +FQ Y G+ F+ C + L+HGV VVGYG
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 294 EKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336
KYWLVKNSWG WG GY+++A++ + CGI ASYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNH----CGIATAASYP 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGSCWAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ G+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDAGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGS WAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDTGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGS WAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDTGFVDIPKQEK 121
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 122 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 181
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 220
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 128/223 (57%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGS WAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDTGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNN 180
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 219
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 160/311 (51%), Gaps = 39/311 (12%)
Query: 59 EERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQN----LSFKLTDNKFADLS 114
++ + W + Y++EY D+ RR I+ NV++I N ++ +++ L N+F D++
Sbjct: 2 DDLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMT 60
Query: 115 NEEFISTYLGYNKPYNEPRWPSVQY----LGLPASVDWRKEGAVTPVKDQGQCGSCWAFS 170
EEF + YL ++ V Y +P +DWR+ G VT VKDQG CGS WAFS
Sbjct: 61 FEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 171 AVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDY 230
+EG +S SEQ+LVDC N GC GG ME A++++ + G+ TE Y
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQF-GLETESSY 179
Query: 231 PYRGKNDRCQTDKTKHHAVTITGYEAI----------------PARYA------FQLYSH 268
PY +C+ +K + +TG+ + PA A F +Y
Sbjct: 180 PYTAVEGQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRS 238
Query: 269 GVF-DEYCGH-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGI 326
G++ + C ++NH V VGYG G YW+VKNSWG SWGE GYIRM RN + +
Sbjct: 239 GIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGN----M 294
Query: 327 CGILMQASYPV 337
CGI AS P+
Sbjct: 295 CGIASLASLPM 305
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 127/223 (56%), Gaps = 33/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGS WAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ G+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDAGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG----EDHGE 294
+F Y G+ F+ C + ++HGV VVGYG E
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDDN 180
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 219
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P VDWR++GAVTPVK+QG CGSCWAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 --YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F CG++++H V VGYG + Y L+
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P VDWR++GAVTPVK+QG CGSCWAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 --YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F CG++++H V VGYG + Y L+
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 125/221 (56%), Gaps = 31/221 (14%)
Query: 143 PASVDWRKEGA-VTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
P S+DWRK+G V+PVK+QG CGSCW FS A+E + TGK++SL+EQ+LVDC N
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHA-------VTITGY 254
N GC GG +AFE+I G+ ED YPY+G++D C+ K A +T+
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 255 EAI--------PARYAFQ------LYSHGVFDEYCGH----QLNHGVTVVGYGEDHGEKY 296
EA+ P +AF+ +Y G++ H ++NH V VGYGE++G Y
Sbjct: 122 EAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPY 181
Query: 297 WLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
W+VKNSWG WG GY + R +CG+ ASYP+
Sbjct: 182 WIVKNSWGPQWGMNGYFLIERGK-----NMCGLAACASYPI 217
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 124/218 (56%), Gaps = 30/218 (13%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P VDWR++GAVTPVK+QG CGSCWAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS- 60
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI----- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 -YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 258 -----------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVK 300
A FQLY G+F CG++++H V VGYG + Y L+K
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILIK 174
Query: 301 NSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
NSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 126/219 (57%), Gaps = 26/219 (11%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
LP SVDWR +GAVTPVK QG C SCWAFS VA VEGINK+KTG LV LSEQELVDCD+ S
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCN GY + +++ + G+ YPY K C+ ++ V G +
Sbjct: 61 --YGCNRGYQSTSLQYVAQ-NGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQ Y G+F+ CG +++H VT VGYG+ G+ Y L+
Sbjct: 118 EGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILI 177
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWG WGE GYIR+ R S +S G+CG+ + YP+K
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSP-GVCGVYRSSYYPIK 215
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 124/219 (56%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P VDWR++GAVTPVK+QG CGS WAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 --YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F CG++++H V VGYG + Y L+
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 124/219 (56%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P VDWR++GAVTPVK+QG CGS WAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 --YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F CG++++H V VGYG + Y L+
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 124/219 (56%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P VDWR++GAVTPVK+QG CGS WAFSAV +EGI K++TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI---- 257
GCNGGY A + + + G+ + YPY G C++ + +A G +
Sbjct: 61 --YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 258 ------------------PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
A FQLY G+F CG++++H V VGYG + Y L+
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R + +S G+CG+ + YPVK
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVK 211
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 125/220 (56%), Gaps = 30/220 (13%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCG+ +AFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ G+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYN-PKYSVANDVGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGVF--DEYCGHQLNHGVTVVGYG-EDHGEKYW 297
+F Y G++ + LNH + VVGYG + +KYW
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYW 180
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
LVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 216
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 36/226 (15%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P S DW K+G +T VK QGQCGS WAFSA A+E + + TG LVSLSEQEL+DC E
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC--VDE 60
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYE------- 255
++GC G+ ++FE++ K GG+ +E DYPY+ ++ +C+ ++ + VTI Y
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSNE 119
Query: 256 ---------------------AIPARYAFQLYSHGVFD-EYCG--HQLNHGVTVVGYGED 291
+I A+ F YS G++D C + +NH V +VGYG +
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDAK-DFHFYSGGIYDGGNCSSPYGINHFVLIVGYGSE 178
Query: 292 HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
G YW+ KNSWG WG GYIR+ RN+ + +G+CG+ ASYP+
Sbjct: 179 DGVDYWIAKNSWGEDWGIDGYIRIQRNT-GNLLGVCGMNYFASYPI 223
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 124/223 (55%), Gaps = 32/223 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PAS+DWRK+GAVT VKDQG CG CWAF A A+EGI+ + TG+L+S+SEQ++VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP---- 258
GG + AF ++ GG+ ++ +YPY G + C D K A I GY +P
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVDGTC--DLNKPIAARIDGYTNVPNSSS 117
Query: 259 -----------------ARYAFQLYSH-GVF-DEYCGHQ---LNHGVTVVGYGED-HGEK 295
+ +FQLY+ G+F C ++H V +VGYG +
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 296 YWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
YW+VKNSWGT WG GYI + RN+ + G+C I SYP K
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPD-GVCAIDAWGSYPTK 219
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 161/320 (50%), Gaps = 47/320 (14%)
Query: 58 MEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQN----LSFKLTDNKFADL 113
+ E++EN+ Y+R Y + E R I+ ++ + N + +S+ L N F D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 114 SNEEFISTYLGYNKPY----NEPRWPSVQYLGL------PASVDWRKEGAVTPVKDQGQC 163
+ EE + G P N + + LGL PAS DWR +G V+PVK+QG C
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSC 137
Query: 164 GSCWAFSAVAAVEGINKLKTGK--LVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221
GS WAFS+ A+E K+ G S+SEQ+LVDC N+ GC+GG+M AF ++ +
Sbjct: 138 GSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA--LGCSGGWMNDAFTYVAQN 195
Query: 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGY----------------------EAIPA 259
GG+ +E YPY + C D + A ++GY A A
Sbjct: 196 GGIDSEGAYPYEMADGNCHYDPNQ-VAARLSGYVYLSGPDENMLADMVATKGPVAVAFDA 254
Query: 260 RYAFQLYSHGV-FDEYC-GHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
F YS GV ++ C ++ H V +VGYG ++G+ YWLVKNSWG WG GY ++AR
Sbjct: 255 DDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIAR 314
Query: 318 NSPSSNIGICGILMQASYPV 337
N+ + CGI AS P
Sbjct: 315 NANNH----CGIAGVASVPT 330
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 125/219 (57%), Gaps = 30/219 (13%)
Query: 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNS 201
+P S+DWR++GAVTPV++QG CGSCW FS+VAAVEGINK+ TG+L+SLSEQEL+DC+ S
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 202 ENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR- 260
GC GG+ A +++ G+ YPY G +C+ + K V G +P
Sbjct: 61 --YGCRGGFPLYALQYVAN-SGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNN 117
Query: 261 ---------------------YAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLV 299
AFQ Y G+F CG ++H V VGYG D Y L+
Sbjct: 118 EQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGND----YILI 173
Query: 300 KNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338
KNSWGT WGE GYIR+ R S + G CG+L + +P K
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQ-GACGVLSDSVFPTK 211
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA+VDWR GAVT VKDQGQCGSCWAFSA+ VE L L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KT 59
Query: 203 NQGCNGGYMEKAFEFITK--IGGVTTEDDYPYRGKNDRCQTDKTKHHAV--TITGYEAIP 258
+ GC+GG M AFE+I + G V TED YPY T H V TITG+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 259 ARYA--------------------FQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWL 298
A + Y+ GV QL+HGV +VGY + YW+
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWI 179
Query: 299 VKNSWGTSWGEAGYIRMARNS 319
+KNSW T WGE GYIR+A+ S
Sbjct: 180 IKNSWTTQWGEEGYIRIAKGS 200
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA+VDWR GAVT VKDQGQCGSCWAFSA+ VE L L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KT 59
Query: 203 NQGCNGGYMEKAFEFITK--IGGVTTEDDYPYRGKNDRCQTDKTKHHAV--TITGYEAIP 258
+ GC+GG M AFE+I + G V TED YPY T H V TITG+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 259 ARYA--------------------FQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWL 298
A + Y+ GV QL+HGV +VGY + YW+
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWI 179
Query: 299 VKNSWGTSWGEAGYIRMARNS 319
+KNSW T WGE GYIR+A+ S
Sbjct: 180 IKNSWTTQWGEEGYIRIAKGS 200
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA+VDWR GAVT VKDQGQCGSCWAFSA+ VE L L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KT 59
Query: 203 NQGCNGGYMEKAFEFITK--IGGVTTEDDYPYRGKNDRCQTDKTKHHAV--TITGYEAIP 258
+ GC+GG M AFE+I + G V TED YPY T H V TITG+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 259 ARYA--------------------FQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWL 298
A + Y+ GV QL+HGV +VGY + YW+
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYWI 179
Query: 299 VKNSWGTSWGEAGYIRMARNS 319
+KNSW T WGE GYIR+A+ S
Sbjct: 180 IKNSWTTQWGEEGYIRIAKGS 200
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 107/201 (53%), Gaps = 26/201 (12%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA+VDWR GAVT VKDQGQCGSCWAFSA+ VE L L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KT 59
Query: 203 NQGCNGGYMEKAFEFITK--IGGVTTEDDYPYRGKNDRCQTDKTKHHAV--TITGYEAIP 258
+ GC+GG M AFE+I + G V TED YPY T H V TITG+ +P
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 259 ARYA--------------------FQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWL 298
A + Y+ GV L+HGV +VGY + YW+
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYWI 179
Query: 299 VKNSWGTSWGEAGYIRMARNS 319
+KNSW T WGE GYIR+A+ S
Sbjct: 180 IKNSWTTQWGEEGYIRIAKGS 200
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 118/223 (52%), Gaps = 32/223 (14%)
Query: 144 ASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSEN 203
A+ DWR VTPVKDQ CGSCWAFS++ +VE ++ KL++LSEQELVDC +N
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KN 77
Query: 204 QGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKN------DRCQ-----------TDKTKH 246
GCNGG + AFE + ++GG+ + DYPY DRC D
Sbjct: 78 YGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLK 137
Query: 247 HAVTITGYEAIPARYA--FQLYSHGVFDEYCGHQLNHGVTVVGYG--------EDHGEK- 295
A+ G +I + F Y G+FD CG QLNH V +VG+G GEK
Sbjct: 138 EALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKH 197
Query: 296 -YWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
Y+++KNSWG WGE G+I + + S + CG+ A P+
Sbjct: 198 YYYIIKNSWGQQWGERGFINIETDE-SGLMRKCGLGTDAFIPL 239
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 115/202 (56%), Gaps = 28/202 (13%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA+VDWR++GAVTPVKDQGQCGSCWAFS + +EG ++ LVSLSEQ LV CD +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD--TI 59
Query: 203 NQGCNGGYMEKAFEFI--TKIGGVTTEDDYPY---RGKNDRCQTDKTKHHAVTITGYEAI 257
+ GC GG M+ AF +I + G V TE YPY G+ +CQ + + A IT + +
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGA-AITDHVDL 118
Query: 258 P------ARY--------------AFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYW 297
P A Y +F Y+ G+ QL+HGV +VGY + YW
Sbjct: 119 PQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPYW 178
Query: 298 LVKNSWGTSWGEAGYIRMARNS 319
++KNSW WGE GYIR+ + +
Sbjct: 179 IIKNSWSNMWGEDGYIRIEKGT 200
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 117/223 (52%), Gaps = 32/223 (14%)
Query: 144 ASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSEN 203
A+ DWR VTPVKDQ CGS WAFS++ +VE ++ KL++LSEQELVDC +N
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSF--KN 76
Query: 204 QGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKN------DRCQ-----------TDKTKH 246
GCNGG + AFE + ++GG+ + DYPY DRC D
Sbjct: 77 YGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLK 136
Query: 247 HAVTITGYEAIPARYA--FQLYSHGVFDEYCGHQLNHGVTVVGYG--------EDHGEK- 295
A+ G +I + F Y G+FD CG QLNH V +VG+G GEK
Sbjct: 137 EALRFLGPISISVAVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKH 196
Query: 296 -YWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
Y+++KNSWG WGE G+I + + S + CG+ A P+
Sbjct: 197 YYYIIKNSWGQQWGERGFINIETDE-SGLMRKCGLGTDAFIPL 238
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 110/220 (50%), Gaps = 32/220 (14%)
Query: 147 DWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGC 206
DWR G VTPVKDQ CGSCWAFS+V +VE ++ L SEQELVDC V +N GC
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSV--KNNGC 82
Query: 207 NGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIP-------- 258
GGY+ AF+ + +GG+ ++DDYPY K + TI Y +IP
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEAL 142
Query: 259 -----------ARYAFQLYSHGVFDEYCGHQLNHGVTVVGYG------EDHGEK----YW 297
A F Y G +D CG NH V +VGYG ED G Y+
Sbjct: 143 RYLGPISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKFYYY 202
Query: 298 LVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
++KNSWG+ WGE GYI + + C I +A P+
Sbjct: 203 IIKNSWGSDWGEGGYINLETDENGYK-KTCSIGTEAYVPL 241
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 100/171 (58%), Gaps = 25/171 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGSCWAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG 289
+F Y G+ F+ C + ++HGV VVGYG
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 99/171 (57%), Gaps = 25/171 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P SVDWR++G VTPVK+QGQCGS WAFSA A+EG KTG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-- 260
N+GCNGG M+ AF+++ GG+ +E+ YPY + C+ + K+ TG+ IP +
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEK 120
Query: 261 --------------------YAFQLYSHGV-FDEYCGHQ-LNHGVTVVGYG 289
+F Y G+ F+ C + ++HGV VVGYG
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 112/219 (51%), Gaps = 32/219 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
P DWR +GAVT VKDQG CGSCWAFS VEG L G L+SLSEQEL+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KM 59
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTK-----HHAVTITGYE-- 255
++ C GG A+ I +GG+ TEDDY Y+G CQ K +V ++ E
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQK 119
Query: 256 -------------AIPARYAFQLYSHGV---FDEYCGHQL-NHGVTVVGYGEDHGEKYWL 298
AI A + Q Y HG+ C L +H V +VGYG+ +W
Sbjct: 120 LAAWLAKRGPISVAINA-FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWA 178
Query: 299 VKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
+KNSWGT WGE GY + R S G CG+ AS V
Sbjct: 179 IKNSWGTDWGEKGYYYLHRGS-----GACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 100/201 (49%), Gaps = 29/201 (14%)
Query: 137 VQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVD 196
+ + +P+ +D R VTP++ QG CGSCWAFS VAA E + LSEQELVD
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVD 65
Query: 197 CDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVT------ 250
C + GC+G + + E+I + GV E YPY + RC+ ++H+ ++
Sbjct: 66 C---ASQHGCHGDTIPRGIEYIQQ-NGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIY 121
Query: 251 -----------------ITGYEAIPARYAFQLYS-HGVFDEYCGHQLN-HGVTVVGYGED 291
I I AFQ Y + G+Q N H V +VGYG
Sbjct: 122 PPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGST 181
Query: 292 HGEKYWLVKNSWGTSWGEAGY 312
G+ YW+V+NSW T+WG++GY
Sbjct: 182 QGDDYWIVRNSWDTTWGDSGY 202
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 130/300 (43%), Gaps = 50/300 (16%)
Query: 55 PQSMEERFENWLKQYSREYGS-EDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADL 113
P S++ FE + K +++ Y + EDE R S + Y+ S + N +DL
Sbjct: 2 PSSIKT-FEEYKKAFNKSYATFEDEEAARKNFLES----VKYVQSNGGAI----NHLSDL 52
Query: 114 SNEEFISTYLGYNKPYN----------EPRWPSVQYLGLPASVDWRKEGAVTPVKDQGQC 163
S +EF + +L + + E S+ PA +D R+ VTP++ QG C
Sbjct: 53 SLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSIN-GNAPAEIDLRQMRTVTPIRMQGGC 111
Query: 164 GSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGG 223
GS WAFS VAA E + + L+EQELVDC + GC+G + + E+I G
Sbjct: 112 GSAWAFSGVAATESAYLAYRDQSLDLAEQELVDC---ASQHGCHGDTIPRGIEYIQH-NG 167
Query: 224 VTTEDDYPYRGKNDRCQTDKTKHHAVT-----------------------ITGYEAIPAR 260
V E Y Y + C+ + ++ I I
Sbjct: 168 VVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDL 227
Query: 261 YAFQLYS-HGVFDEYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARN 318
AF+ Y + G+Q N H V +VGY G YW+V+NSW T+WG+ GY A N
Sbjct: 228 DAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA +D R+ VTP++ QG CGSCWAFS VAA E + + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC---AS 67
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVT------------ 250
GC+G + + E+I GV E Y Y + C+ + ++
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNK 126
Query: 251 -----------ITGYEAIPARYAFQLYS-HGVFDEYCGHQLN-HGVTVVGYGEDHGEKYW 297
I I AF+ Y + G+Q N H V +VGY G YW
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 298 LVKNSWGTSWGEAGYIRMARN 318
+V+NSW T+WG+ GY A N
Sbjct: 187 IVRNSWDTNWGDNGYGYFAAN 207
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 29/201 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA +D R+ VTP++ QG CGSCWAFS VAA E + + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC---AS 67
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVT------------ 250
GC+G + + E+I GV E Y Y + C+ + ++
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANK 126
Query: 251 -----------ITGYEAIPARYAFQLYS-HGVFDEYCGHQLN-HGVTVVGYGEDHGEKYW 297
I I AF+ Y + G+Q N H V +VGY G YW
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 298 LVKNSWGTSWGEAGYIRMARN 318
+V+NSW T+WG+ GY A N
Sbjct: 187 IVRNSWDTNWGDNGYGYFAAN 207
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 91/201 (45%), Gaps = 29/201 (14%)
Query: 143 PASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSE 202
PA +D R+ VTP++ QG CGS WAFS VAA E + + L+EQELVDC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC---AS 67
Query: 203 NQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVT------------ 250
GC+G + + E+I GV E Y Y + C+ + ++
Sbjct: 68 QHGCHGDTIPRGIEYIQH-NGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANK 126
Query: 251 -----------ITGYEAIPARYAFQLYS-HGVFDEYCGHQLN-HGVTVVGYGEDHGEKYW 297
I I AF+ Y + G+Q N H V +VGY G YW
Sbjct: 127 IREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYW 186
Query: 298 LVKNSWGTSWGEAGYIRMARN 318
+V+NSW T+WG+ GY A N
Sbjct: 187 IVRNSWDTNWGDNGYGYFAAN 207
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 127/288 (44%), Gaps = 63/288 (21%)
Query: 91 QYIDYINSQNLSFKLTDNKF-ADLSN-EEFISTYLGYNKPYNEPRWPSVQYLGLPASVDW 148
+ ++Y+N +N +++ N + D+S + T+LG KP R + L LPAS D
Sbjct: 13 ELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQ--RVMFTEDLKLPASFDA 70
Query: 149 RKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVS--LSEQELVDCDVNSE 202
R++ P ++DQG CGSCWAF AV A+ + T VS +S ++L+ C +
Sbjct: 71 REQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMC 130
Query: 203 NQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYPYRGKNDRCQ 240
GCNGGY +A+ F T+ G V+ P G+ D +
Sbjct: 131 GDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPK 190
Query: 241 TDKT------------KHHA------------VTITGYEAIPARYAFQLYS------HGV 270
K KH+ + Y+ P AF +YS GV
Sbjct: 191 CSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 250
Query: 271 FDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 251 YQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 298
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 58/314 (18%)
Query: 74 GSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTD-NKFADLSNEEFISTYLGYNKPYNEP 132
G ++++ R +YS + ++ INS S+ T ++ LS + I G++ P
Sbjct: 134 GLQEKYSER--LYSHHHNFVKAINSVQKSWTATTYRRYEKLSIRDLIRRS-GHSGRILRP 190
Query: 133 RWPSV------QYLGLPASVDWRKEGA---VTPVKDQGQCGSCWAFSAVAAVEGINKLKT 183
+ + Q L LP S DWR V+PV++Q CGSC++F+++ +E ++ T
Sbjct: 191 KPAPITDEIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILT 250
Query: 184 --GKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQ- 240
+ LS QE+V C + QGC+GG+ + GV E+ +PY + C+
Sbjct: 251 NNSQTPILSPQEVVSCSPYA--QGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKP 308
Query: 241 ---------TDKTKHHAVTITGYEAI---------PARYAFQ-----------LYSH-GV 270
++ EA+ P AF+ +Y H G+
Sbjct: 309 KENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGL 368
Query: 271 FDEYCGHQL-NHGVTVVGYGED--HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGIC 327
D + +L NH V +VGYG+D G YW+VKNSWG+ WGE+GY R+ R + C
Sbjct: 369 SDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDE-----C 423
Query: 328 GI--LMQASYPVKR 339
I + A+ P+ +
Sbjct: 424 AIESIAMAAIPIPK 437
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 136/296 (45%), Gaps = 50/296 (16%)
Query: 75 SEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTD-NKFADLSNEEFISTYLGYNKPYNEPR 133
S++++ R Y N ++ IN+ S+ T ++ L+ + I G+++ P+
Sbjct: 135 SQEKYSNRLYKYDHN--FVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPK 192
Query: 134 WPSV------QYLGLPASVDWRKEGA---VTPVKDQGQCGSCWAFSAVAAVEGINKLKTG 184
+ + L LP S DWR V+PV++Q CGSC++F+++ +E ++ T
Sbjct: 193 PAPLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTN 252
Query: 185 KLVS--LSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTD 242
+ LS QE+V C + QGC GG+ + G+ E +PY G + C+
Sbjct: 253 NSQTPILSPQEVVSC--SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMK 310
Query: 243 K-------TKHHAV---------TITGYEAI---PARYAFQLYSH------------GVF 271
+ +++H V + E + P AF++Y G+
Sbjct: 311 EDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR 370
Query: 272 DEYCGHQL-NHGVTVVGYGED--HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNI 324
D + +L NH V +VGYG D G YW+VKNSWGT WGE GY R+ R + I
Sbjct: 371 DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 426
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 103/244 (42%), Gaps = 59/244 (24%)
Query: 140 LGLPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVS--LSEQE 193
L LPAS D R++ P ++DQG CGSCWAF AV A+ + T VS +S ++
Sbjct: 1 LKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAED 60
Query: 194 LVDCDVNSENQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYP 231
L+ C + GCNGGY +A+ F T+ G V+ P
Sbjct: 61 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 120
Query: 232 YRGKNDRCQTDKT------------KHHA------------VTITGYEAIPARYAFQLYS 267
G+ D + K KH+ + Y+ P AF +YS
Sbjct: 121 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS 180
Query: 268 ------HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSP 320
GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQD 240
Query: 321 SSNI 324
I
Sbjct: 241 HCGI 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 59/242 (24%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVS--LSEQELV 195
LPAS D R++ P ++DQG CGSCWAF AV A+ + T VS +S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYPYR 233
C + GCNGGY +A+ F T+ G V+ P
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 234 GKNDRCQTDKT------------KHHA------------VTITGYEAIPARYAFQLYS-- 267
G+ D + K KH+ + Y+ P AF +YS
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181
Query: 268 ----HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSS 322
GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 182 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 241
Query: 323 NI 324
I
Sbjct: 242 GI 243
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 102/242 (42%), Gaps = 59/242 (24%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVS--LSEQELV 195
LPAS D R++ P ++DQG CGSCWAF AV A+ + T VS +S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYPYR 233
C + GCNGGY +A+ F T+ G V+ P
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 234 GKNDRCQTDKT------------KHHA------------VTITGYEAIPARYAFQLYS-- 267
G+ D + K KH+ + Y+ P AF +YS
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 180
Query: 268 ----HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSS 322
GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 181 LLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHC 240
Query: 323 NI 324
I
Sbjct: 241 GI 242
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 102/246 (41%), Gaps = 63/246 (25%)
Query: 140 LGLPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVS--LSEQE 193
L LPAS D R++ P ++DQG CGS WAF AV A+ + T VS +S ++
Sbjct: 5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAED 64
Query: 194 LVDCDVNSENQGCNGGYMEKAFEFITKIGGV----------------------------- 224
L+ C + GCNGGY +A+ F T+ G V
Sbjct: 65 LLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPP 124
Query: 225 -TTEDDYP------------------YRGKNDRCQTDKTKHHAVTITGYEAIPARYAFQL 265
T E D P + G N ++ K I Y+ P AF +
Sbjct: 125 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEI--YKNGPVEGAFSV 182
Query: 266 YS------HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARN 318
YS GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 183 YSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG 242
Query: 319 SPSSNI 324
I
Sbjct: 243 QDHCGI 248
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 67/288 (23%)
Query: 93 IDYINSQNLSFKLTDNKF-ADLSN-EEFISTYLGYNKPYNEPRWPSVQYLGLPASVDWRK 150
I+YIN QN +++ N + D+S ++ T LG P R + + LP S D R+
Sbjct: 14 INYINKQNTTWQAGRNFYNVDISYLKKLCGTVLG--GPKLPERVGFSEDINLPESFDARE 71
Query: 151 EGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKT-GKL-VSLSEQELVDCDVNSENQ 204
+ + P ++DQG CGS WAF AV A+ + T G++ V +S ++L+ C
Sbjct: 72 QWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGD 131
Query: 205 GCNGGYMEKAFEFITKIGGV------------------------------TTEDDYPYRG 234
GCNGGY A+ F T+ G V T E D P
Sbjct: 132 GCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPK-- 189
Query: 235 KNDRCQT------DKTKHHAVTITG------------YEAIPARYAFQLYS------HGV 270
N C+ + KH+ T Y+ P AF ++S GV
Sbjct: 190 CNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGV 249
Query: 271 FDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
+ G + H + ++G+G ++G YWLV NSW WG+ G+ ++ R
Sbjct: 250 YKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 297
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 61/243 (25%)
Query: 142 LPASVDWRKE----GAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTG--KLVSLSEQELV 195
+P+S D RK+ ++ ++DQ +CGSCWAF AV A+ + +++G + V LS +L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGVT---------------------TEDDYPYRG 234
C S GC GG + A+++ K G VT T+ YP G
Sbjct: 63 SC-CESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 235 ----KNDRCQT----------DKTKHHAVT--------------ITGYEAIPARYA---- 262
K RC+ + KH + I Y + A +
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 263 FQLYSHGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPS 321
F Y G++ G L H + ++G+G ++ YWL+ NSW WGE GY R+ R
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDE 241
Query: 322 SNI 324
+I
Sbjct: 242 CSI 244
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 102/239 (42%), Gaps = 63/239 (26%)
Query: 140 LGLPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKT-GKL-VSLSEQE 193
+ LP S D R++ + P ++DQG CGSCWAF AV A+ + T G++ V +S ++
Sbjct: 5 INLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAED 64
Query: 194 LVDCDVNSENQGCNGGYMEKAFEFITKIGGV----------------------------- 224
L+ C GCNGGY A+ F T+ G V
Sbjct: 65 LLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 225 -TTEDDYPYRGKNDRCQT------DKTKHHAVTITG------------YEAIPARYAFQL 265
T E D P N C+ + KH+ T Y+ P AF +
Sbjct: 125 CTGEGDTPK--CNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 182
Query: 266 YS------HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
+S GV+ G + H + ++G+G ++G YWLV NSW WG+ G+ ++ R
Sbjct: 183 FSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 241
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 101/237 (42%), Gaps = 63/237 (26%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAVEGINKLKT-GKL-VSLSEQELV 195
LP S D R++ + P ++DQG CGSCWAF AV A+ + T G++ V +S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGV------------------------------T 225
C GCNGGY A+ F T+ G V T
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 226 TEDDYPYRGKNDRCQT------DKTKHHAVTITG------------YEAIPARYAFQLYS 267
E D P N C+ + KH+ T Y+ P AF ++S
Sbjct: 121 GEGDTPK--CNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 178
Query: 268 ------HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
GV+ G + H + ++G+G ++G YWLV NSW WG+ G+ ++ R
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR 235
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 51/233 (21%)
Query: 142 LPASVD----WRKEGAVTPVKDQGQCGSCWAFSAVAAV-EGINKLKTGKLVSLSEQELVD 196
LP+S D W + + DQ CGSCWA +A +A+ + + + V +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 197 CDVNSENQGCNGGYMEKAFEFITKIGGVTTE-DDYPY-------RGKN----------DR 238
C + GCNGG ++A+ + + G V+ YP+ + KN D
Sbjct: 132 C-CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 239 CQTDKT-KHHAVTITGYEAI-------------------PARYAFQLY------SHGVFD 272
+ D T + + Y + P AF +Y + GV+
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH 250
Query: 273 EYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNI 324
G L H V +VG+G +G YW + NSW T WG GY + R S I
Sbjct: 251 HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 91/244 (37%), Gaps = 73/244 (29%)
Query: 142 LPASVD----WRKEGAVTPVKDQGQCGSCWAFSAVAAV-EGINKLKTGKLVSLSEQELVD 196
LP+S D W + + DQ CGSCWA +A +A+ + + + V +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 197 CDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQT---DKTKHHAVTITG 253
C + GCNGG ++A+ + + G V+ D CQ HH+ + G
Sbjct: 154 C-CSDCGDGCNGGDPDRAWAYFSSTGLVS-----------DYCQPYPFPHCSHHSKSKNG 201
Query: 254 YE-------------------AIP-------ARYAFQ----------------------- 264
Y IP YA Q
Sbjct: 202 YPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE 261
Query: 265 ---LYSHGVFDEYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSP 320
Y+ GV+ G L H V +VG+G +G YW + NSW T WG GY + R S
Sbjct: 262 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 321
Query: 321 SSNI 324
I
Sbjct: 322 ECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 91/244 (37%), Gaps = 73/244 (29%)
Query: 142 LPASVD----WRKEGAVTPVKDQGQCGSCWAFSAVAAV-EGINKLKTGKLVSLSEQELVD 196
LP+S D W + + DQ CGSCWA +A +A+ + + + V +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 197 CDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQT---DKTKHHAVTITG 253
C + GCNGG ++A+ + + G V+ D CQ HH+ + G
Sbjct: 131 C-CSDCGDGCNGGDPDRAWAYFSSTGLVS-----------DYCQPYPFPHCSHHSKSKNG 178
Query: 254 YE-------------------AIP-------ARYAFQ----------------------- 264
Y IP YA Q
Sbjct: 179 YPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE 238
Query: 265 ---LYSHGVFDEYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSP 320
Y+ GV+ G L H V +VG+G +G YW + NSW T WG GY + R S
Sbjct: 239 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 298
Query: 321 SSNI 324
I
Sbjct: 299 ECGI 302
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 50/223 (22%)
Query: 142 LPASVDWRKEGAV---TPVKDQG---QCGSCWAFSAVAAV-EGINKLKTGKLVS--LSEQ 192
LP S DWR V + ++Q CGSCWA ++ +A+ + IN + G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 193 ELVDCDVNSENQG-CNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQ--------TDK 243
++DC N G C GG +++ + G+ E Y+ K+ C +
Sbjct: 61 NVIDCG----NAGSCEGGNDLSVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQCGTCNEF 115
Query: 244 TKHHAV------------TITGYE--------------AIPARYAFQLYSHGVFDEYCGH 277
+ HA+ +++G E I A Y+ G++ EY
Sbjct: 116 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDT 175
Query: 278 Q-LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNS 319
+NH V+V G+G G +YW+V+NSWG WGE G++R+ ++
Sbjct: 176 TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 218
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 50/223 (22%)
Query: 142 LPASVDWRKEGAV---TPVKDQG---QCGSCWAFSAVAAV-EGINKLKTGKLVS--LSEQ 192
LP S DWR V + ++Q CGSCWA ++ +A+ + IN + G S LS Q
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 193 ELVDCDVNSENQG-CNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQ--------TDK 243
++DC N G C GG +++ + G+ E Y+ K+ C +
Sbjct: 96 NVIDCG----NAGSCEGGNDLSVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQCGTCNEF 150
Query: 244 TKHHAV------------TITGYE--------------AIPARYAFQLYSHGVFDEYCGH 277
+ HA+ +++G E I A Y+ G++ EY
Sbjct: 151 KECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDT 210
Query: 278 Q-LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNS 319
+NH V+V G+G G +YW+V+NSWG WGE G++R+ ++
Sbjct: 211 TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTST 253
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 100/235 (42%), Gaps = 59/235 (25%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAV-EGINKLKTGKL-VSLSEQELV 195
LP S D R++ P ++DQG CGSCWAF AV A+ + I G++ V +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYPYR 233
C GCNGG+ A+ F TK G V+ P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 234 GKNDRCQTDKT------------KHHA------------VTITGYEAIPARYAFQLYS-- 267
G+ D + KT KH + Y+ P AF +YS
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDF 180
Query: 268 ----HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 181 LLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 235
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 99/235 (42%), Gaps = 59/235 (25%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAV-EGINKLKTGKL-VSLSEQELV 195
LP S D R++ P ++DQG CGSCWAF AV A+ + I G++ V +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 196 DCDVNSENQGCNGGYMEKAFEFITKIGGVT----------------------TEDDYPYR 233
C GCNGG A+ F TK G V+ P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 234 GKNDRCQTDKT------------KHHA------------VTITGYEAIPARYAFQLYS-- 267
G+ D + KT KH + Y+ P AF +YS
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDF 180
Query: 268 ----HGVFDEYCGHQL-NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 181 LLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 58 MEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADLSNEE 117
++ F ++ Y++ Y +E+E QRR+ I+ +N+ YI N Q S+ L N F DLS +E
Sbjct: 21 FQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDE 80
Query: 118 FISTYLGYNKPYN 130
F YLG+ K N
Sbjct: 81 FRRKYLGFKKSRN 93
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
Query: 142 LPASVDWRKEGA---VTPVKDQGQCGSCWAFSAVAAVEGINKLKT--GKLVSLSEQELVD 196
LP S DWR V+PV++Q CGSC++F+++ +E ++ T + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 197 CDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDK 243
C + QGC GG+ + G+ E +PY G + C+ +
Sbjct: 61 C--SQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKE 105
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 280 NHGVTVVGYGEDH--GEKYWLVKNSWGTSWGEAGYIRMARNS 319
NH V +VGYG D G YW+VKNSWGT WGE GY R+ R +
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGT 51
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 53/191 (27%)
Query: 187 VSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVT--------------------- 225
V +S ++L+ C + GCNGGY +A+ F T+ G V+
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHH 62
Query: 226 -TEDDYPYRGKNDRCQTDKT------------KHHA------------VTITGYEAIPAR 260
P G+ D + K KH+ + Y+ P
Sbjct: 63 VNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVE 122
Query: 261 YAFQLYS------HGVFDEYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYI 313
AF +YS GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+
Sbjct: 123 GAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFF 182
Query: 314 RMARNSPSSNI 324
++ R I
Sbjct: 183 KILRGQDHCGI 193
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 56/221 (25%)
Query: 157 VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAF- 215
V+DQG C + W F++ +E I +K + +S + +C C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 216 EFITKIGGVTTEDDYPYRG------------------KNDRCQTDKTKHHAVTITGYEAI 257
+ I G + E +YPY N + +K + +++ GY A
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 258 PARY------AF------QLYSHGVFDEY-------------------CGHQL-NHGVTV 285
+ AF ++ + G Y CG +H V +
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 286 VGYGE---DHGEK--YWLVKNSWGTSWGEAGYIRMARNSPS 321
VGYG GEK YW+V+NSWG WG+ GY ++ P+
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT 244
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 81/221 (36%), Gaps = 56/221 (25%)
Query: 157 VKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAF- 215
V+DQG C + W F++ +E I +K + +S + +C C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 216 EFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTI---------------------TGY 254
+ I G + E +YPY Q K + H + + T Y
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 255 E---------AIPARYAFQLYSHGVFDEY-------------------CGHQL-NHGVTV 285
E A ++ + G Y CG +H V +
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 286 VGYGE---DHGEK--YWLVKNSWGTSWGEAGYIRMARNSPS 321
VGYG GEK YW+V+NSWG WG+ GY ++ P+
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT 245
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 263 FQLYSHGVFDEYCGHQLN-HGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMAR 317
F LY GV+ G + H + ++G+G ++G YWLV NSW T WG+ G+ ++ R
Sbjct: 132 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 187
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 295 KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337
KYWLVKNSWG WG GY++MA++ + CGI ASYP
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNH----CGIASAASYPT 41
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAV 175
LPAS D R++ P ++DQG CGSCWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 142 LPASVDWRKEGAVTP----VKDQGQCGSCWAFSAVAAV 175
LP S D R++ P ++DQG CGSCWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 71/230 (30%)
Query: 141 GLPASVDWRKEGAVTP---VKDQGQCGSCWAFSAVAAV--EGINKLKTGKLVSLS----- 190
LP VD +TP V DQG+ GSC A + AA+ E I+ ++ + +
Sbjct: 56 ALPPKVD------LTPPFQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYY 109
Query: 191 EQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPY------------------ 232
+ ++ VN ++ G + + + K+G V E ++PY
Sbjct: 110 NERKIEGHVNYDS----GAMIRDGIKVLHKLG-VCPEKEWPYGDTPADPRTEEFPPGAPA 164
Query: 233 -RGKNDRCQTDKTKHHAVTITGYEAI---------------PARYAFQLYSHGVFDEYCG 276
+ +D+C D + IT Y + P + F +Y+ V +
Sbjct: 165 SKKPSDQCYKDAQNY---KITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLP 221
Query: 277 HQL-----------NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRM 315
++ H V VGY D +++ ++NSWG + GE GY M
Sbjct: 222 VRIPLPTKNDTLEGGHAVLCVGY--DDEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 150 KEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGK 185
KE +T VK+Q + G+CW +S+ + +E L+ GK
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLES-ELLRXGK 52
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 258 PARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDH-GEKYWLVKNSWGTS 306
P ++ Q +D Y +HG + G +D G +Y+ VKNSWGT+
Sbjct: 296 PQKWCTQAERQLAYDNYETTD-DHGXQIYGIAKDQEGNEYYXVKNSWGTN 344
>pdb|1G0D|A Chain A, Crystal Structure Of Red Sea Bream Transglutaminase
Length = 695
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 32/108 (29%)
Query: 91 QYIDYINSQNLSFKLTDNKFADLSNEEFI------STYLG-------------------Y 125
Q+ DY+ ++ F++ DN A L N E Y+G +
Sbjct: 179 QFEDYV--MDICFEVLDNSPAALKNSEMDIEHRSDPVYVGRTITAMVNSNGDRGVLTGRW 236
Query: 126 NKPYNEPRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVA 173
+PY + P +P W K G V PVK G CW F+AVA
Sbjct: 237 EEPYTDGVAPYRWTGSVPILQQWSKAG-VRPVK----YGQCWVFAAVA 279
>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 179
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 198 DVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAI 257
D+ +Q C +M K F + K G V+ + ND + ++H + + G ++I
Sbjct: 79 DIAYYSQRCGYTHMVKEFRDVCKAGAVS-------QAYNDLASRHRARYHNIEVLGVKSI 131
Query: 258 P 258
P
Sbjct: 132 P 132
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 279 LNHGVTVVGYGE----DHGEKYWLVKNSWGTSWGEAGYIRMA 316
+ H +T E D W V+NSWG G GY+ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 279 LNHGVTVVGYGE----DHGEKYWLVKNSWGTSWGEAGYIRMA 316
+ H +T E D W V+NSWG G GY+ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 154 VTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEK 213
+ P + G+C + + S + E K+G S SE LV ++ +GCN ++
Sbjct: 36 LPPKAETGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDE 95
Query: 214 AFEFITKIGGVTTEDDYPYR 233
+++F T G + P++
Sbjct: 96 SWDFGTGAGFYVDATEDPWK 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,465,095
Number of Sequences: 62578
Number of extensions: 523478
Number of successful extensions: 1531
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 165
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)