Query 041120
Match_columns 340
No_of_seqs 352 out of 1901
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnx_A Papain; hydrolase, cyto 100.0 3.3E-83 1.1E-87 611.8 31.5 280 52-339 56-363 (363)
2 3qj3_A Cathepsin L-like protei 100.0 3.4E-81 1.1E-85 594.2 31.1 278 54-338 14-331 (331)
3 1pci_A Procaricain; zymogen, h 100.0 6.4E-81 2.2E-85 590.5 29.6 282 54-339 14-322 (322)
4 3qt4_A Cathepsin-L-like midgut 100.0 1.5E-80 5.1E-85 588.6 27.7 278 52-338 17-329 (329)
5 2c0y_A Procathepsin S; proenzy 100.0 4.5E-80 1.5E-84 583.4 27.3 279 55-338 5-315 (315)
6 1by8_A Protein (procathepsin K 100.0 1.1E-79 3.9E-84 580.3 27.3 277 55-338 4-314 (314)
7 1cs8_A Human procathepsin L; p 100.0 3.3E-79 1.1E-83 577.7 28.0 276 57-338 7-316 (316)
8 2o6x_A Procathepsin L1, secret 100.0 2E-78 6.7E-83 571.0 26.3 271 60-338 3-306 (310)
9 1xkg_A DER P I, major mite fec 100.0 3.8E-74 1.3E-78 541.3 21.5 260 61-339 7-303 (312)
10 3pdf_A Cathepsin C, dipeptidyl 100.0 5.7E-67 2E-71 511.8 20.7 252 77-337 135-434 (441)
11 3hhi_A Cathepsin B-like cystei 100.0 2E-65 7E-70 484.7 18.7 249 80-338 2-312 (325)
12 3p5u_A Actinidin; SAD, cystein 100.0 5.6E-63 1.9E-67 445.0 20.1 196 142-339 1-218 (220)
13 1ppo_A Protease omega; hydrola 100.0 7E-62 2.4E-66 436.6 21.3 194 142-339 1-216 (216)
14 1cqd_A Protein (protease II); 100.0 9.1E-62 3.1E-66 437.3 22.0 195 141-339 2-218 (221)
15 3pbh_A Procathepsin B; thiol p 100.0 3.2E-62 1.1E-66 461.8 19.7 241 89-337 11-313 (317)
16 1yal_A Chymopapain; hydrolase, 100.0 1.3E-61 4.4E-66 435.4 21.5 194 142-339 1-216 (218)
17 1iwd_A Ervatamin B; cysteine p 100.0 1.4E-61 4.6E-66 434.3 21.5 193 142-339 1-215 (215)
18 1s4v_A Cysteine endopeptidase; 100.0 2.4E-61 8.1E-66 436.7 20.0 197 141-339 1-220 (229)
19 3kwz_A Cathepsin K; enzyme inh 100.0 3.3E-61 1.1E-65 432.0 20.5 190 142-338 1-215 (215)
20 3ovx_A Cathepsin S; hydrolase, 100.0 2.3E-61 7.9E-66 433.8 19.3 192 142-338 2-218 (218)
21 2fo5_A Cysteine proteinase EP- 100.0 2.5E-61 8.6E-66 443.8 18.6 198 140-339 2-225 (262)
22 3ioq_A CMS1MS2; caricaceae, cy 100.0 4E-61 1.4E-65 430.8 19.3 190 142-339 1-212 (213)
23 3u8e_A Papain-like cysteine pr 100.0 3E-61 1E-65 434.3 18.4 192 142-338 1-219 (222)
24 1m6d_A Cathepsin F, catsf; pap 100.0 8.9E-61 3E-65 428.8 20.4 190 142-339 1-214 (214)
25 2cio_A Papain; hydrolase/inhib 100.0 1.3E-60 4.3E-65 427.2 20.9 190 142-339 1-212 (212)
26 2oul_A Falcipain 2; cysteine p 100.0 2.1E-60 7.1E-65 433.7 21.2 196 140-339 16-241 (241)
27 2xu3_A Cathepsin L1; hydrolase 100.0 1.8E-60 6.2E-65 428.6 20.3 192 142-338 1-220 (220)
28 3i06_A Cruzipain; autocatalyti 100.0 3.7E-60 1.3E-64 425.1 21.2 189 142-338 1-214 (215)
29 3bwk_A Cysteine protease falci 100.0 2.3E-60 7.7E-65 434.0 19.7 197 139-339 17-243 (243)
30 2bdz_A Mexicain; cysteine prot 100.0 4.7E-60 1.6E-64 424.0 20.5 190 142-339 1-212 (214)
31 8pch_A Cathepsin H; hydrolase, 100.0 2.6E-60 8.8E-65 427.6 18.9 191 142-338 1-218 (220)
32 2b1m_A SPE31; papain-like, sug 100.0 8.4E-60 2.9E-64 430.8 21.5 195 141-339 1-225 (246)
33 3f75_A Toxopain-2, cathepsin L 100.0 2.2E-60 7.4E-65 429.2 17.3 196 140-338 5-224 (224)
34 1o0e_A Ervatamin C; plant cyst 100.0 1E-59 3.4E-64 420.1 19.7 185 142-338 1-207 (208)
35 3f5v_A DER P 1 allergen; aller 100.0 2.5E-59 8.7E-64 421.7 17.7 188 140-338 8-222 (222)
36 3cbj_A Cathepsin B; cathepsin 100.0 4E-55 1.4E-59 404.4 17.5 192 140-338 5-257 (266)
37 1deu_A Procathepsin X; cystein 100.0 6.1E-55 2.1E-59 405.1 17.0 197 138-338 32-275 (277)
38 3qsd_A Cathepsin B-like peptid 100.0 1.3E-54 4.5E-59 398.5 18.1 191 141-338 2-253 (254)
39 2wbf_X Serine-repeat antigen p 100.0 1.5E-50 5.1E-55 373.7 19.4 190 144-337 9-260 (265)
40 3ois_A Cysteine protease; alph 100.0 2E-47 6.7E-52 357.3 11.8 209 103-319 14-273 (291)
41 2cb5_A Protein (bleomycin hydr 100.0 3.3E-39 1.1E-43 314.0 14.0 189 141-339 47-424 (453)
42 2e01_A Cysteine proteinase 1; 100.0 1.2E-38 4.2E-43 310.3 14.4 91 141-232 52-169 (457)
43 3pw3_A Aminopeptidase C; bleom 100.0 3.9E-35 1.3E-39 279.9 8.9 78 153-231 21-108 (383)
44 3f75_P Toxopain-2, cathepsin L 99.8 1.7E-19 6E-24 142.1 9.8 75 54-128 17-91 (106)
45 2l95_A Crammer, LP06209P; cyst 99.7 5E-18 1.7E-22 127.7 6.8 67 59-127 7-77 (80)
46 1pxv_A Cysteine protease; hydr 96.1 0.013 4.5E-07 49.1 7.1 130 158-318 25-162 (183)
47 1x9y_A Cysteine proteinase; ha 95.3 0.09 3.1E-06 48.7 9.9 130 158-318 201-338 (367)
48 1cv8_A Staphopain; cysteine pr 95.1 0.043 1.5E-06 45.9 6.4 121 158-305 16-145 (174)
49 1th5_A NIFU1; iron-sulfur clus 23.1 37 0.0013 24.0 1.8 27 154-182 37-63 (74)
50 2r9f_A Calpain-1 catalytic sub 20.7 1.1E+02 0.0036 28.1 4.8 37 280-316 246-312 (339)
51 2z79_A Endo-1,4-beta-xylanase 20.3 72 0.0025 26.7 3.2 37 266-307 53-89 (185)
52 1ziv_A Calpain 9; cysteine pro 20.0 1.1E+02 0.0036 28.1 4.7 37 280-316 245-312 (339)
No 1
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=100.00 E-value=3.3e-83 Score=611.85 Aligned_cols=280 Identities=41% Similarity=0.782 Sum_probs=247.2
Q ss_pred CCChhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEEcccCCCCCHHHHHHhhcCCCCCCCC
Q 041120 52 KYDPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADLSNEEFISTYLGYNKPYNE 131 (340)
Q Consensus 52 ~~~~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~~ 131 (340)
..+++.+.++|++|+++|+|+|.+.+|+.+|++||++|+++|++||+++.+|++|+|+|+|||.+||++++++.......
T Consensus 56 l~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~ 135 (363)
T 3tnx_A 56 LTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYT 135 (363)
T ss_dssp SSCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHHHHHHHSCSSCSCCC
T ss_pred hcCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHHHHHHhccccccccc
Confidence 45678999999999999999999999999999999999999999999989999999999999999999999876543221
Q ss_pred ------CCCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCC
Q 041120 132 ------PRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQG 205 (340)
Q Consensus 132 ------~~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~g 205 (340)
.........+||++||||++|+||||||||.||||||||+++++|++++++++.++.||||+|+||+.. +.|
T Consensus 136 ~~~~~~~~~~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~~--~~G 213 (363)
T 3tnx_A 136 TTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR--SYG 213 (363)
T ss_dssp CSSSSSSCCCCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCT
T ss_pred ccccccccccCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccCC--CCC
Confidence 111122234799999999999999999999999999999999999999999999999999999999886 789
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------ccc
Q 041120 206 CNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAF 263 (340)
Q Consensus 206 C~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f 263 (340)
|+||++..|++|+.++ ||++|++|||.+.++.|..........++.+|..++.. .+|
T Consensus 214 C~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a~~~~F 292 (363)
T 3tnx_A 214 CNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 292 (363)
T ss_dssp TBCCCHHHHHHHHHHT-CBCBTTTSCCCSSCCCCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECCCSHHH
T ss_pred CCCCChHHHHhHHHhc-CccccccCCCcCcCCCcccCCCCCceeeccceEEcchhhHHHHHHHHHcCCcEEEEEecchhh
Confidence 9999999999999887 89999999999988888765333445566666655443 579
Q ss_pred ccccCceecCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 264 QLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 264 ~~y~~Gi~~~~c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|++|||..+|++.+||||+|||||+ +|||||||||++|||+|||||+||.++. .|+|||++.|+||+.|
T Consensus 293 ~~Y~sGVy~~~~~~~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~-~~~CGI~~~a~yPikn 363 (363)
T 3tnx_A 293 QLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 363 (363)
T ss_dssp HTEEEEEECCCCCSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCS-SCGGGTTSCEEEEECC
T ss_pred hCCCCCEECCCCCCCCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCC-CCcCCccceeeecccC
Confidence 999999999999988999999999987 4999999999999999999999998665 7899999999999976
No 2
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=100.00 E-value=3.4e-81 Score=594.19 Aligned_cols=278 Identities=38% Similarity=0.723 Sum_probs=248.3
Q ss_pred ChhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC----CCceEEEcccCCCCCHHHHHHhhcCCCCCC
Q 041120 54 DPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNKFADLSNEEFISTYLGYNKPY 129 (340)
Q Consensus 54 ~~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~----~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~ 129 (340)
++..+...|++|+++|+|+|.+.+|+.+|++||++|+++|++||++ ..+|++|+|+|+|||.|||++++++.+.+.
T Consensus 14 ~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~~~~ 93 (331)
T 3qj3_A 14 PSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPA 93 (331)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCCCCS
T ss_pred CCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhccccccc
Confidence 3778899999999999999998899999999999999999999986 379999999999999999999998765432
Q ss_pred CC--C--CCCCC------CCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCC--ccccChhHhhhc
Q 041120 130 NE--P--RWPSV------QYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGK--LVSLSEQELVDC 197 (340)
Q Consensus 130 ~~--~--~~~~~------~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~--~~~LS~q~l~dc 197 (340)
.. . .+... ...+||++||||++|+||||||||.||||||||++++||++++++++. +++||+|+|+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSeQ~LvdC 173 (331)
T 3qj3_A 94 DLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDC 173 (331)
T ss_dssp STTTTCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCHHHHHHH
T ss_pred cccccCcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCHHHHhhh
Confidence 11 1 11111 234799999999999999999999999999999999999999999999 899999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------
Q 041120 198 DVNSENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------- 260 (340)
Q Consensus 198 ~~~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------- 260 (340)
+.. +.||+||++..|++|+.+++||++|++|||.+.++.|... .....+++++|..++..
T Consensus 174 ~~~--~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v 250 (331)
T 3qj3_A 174 VPN--ALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYD-PNQVAARLSGYVYLSGPDENMLADMVATKGPVAV 250 (331)
T ss_dssp CTT--SCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCC-TTSEEECCSEEEEESSCCHHHHHHHHHHHCCEEE
T ss_pred ccC--CCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCC-cccceeEeeEEEEeCCCCHHHHHHHHHhCCCEEE
Confidence 986 8899999999999999999899999999999999999876 34567889999888753
Q ss_pred -----cccccccCceecCC-CC-CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecc
Q 041120 261 -----YAFQLYSHGVFDEY-CG-HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQA 333 (340)
Q Consensus 261 -----~~f~~y~~Gi~~~~-c~-~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~ 333 (340)
.+|++|++|||..+ |+ ..++|||+|||||+++|++|||||||||++|||+|||||+|+.+| .|||++.+
T Consensus 251 ~i~a~~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~CgI~~~~ 326 (331)
T 3qj3_A 251 AFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANN----HCGIAGVA 326 (331)
T ss_dssp EECCCTTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSC
T ss_pred EEEcccccccccCceEeCCCCCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCC----ccCcCCce
Confidence 34999999999986 86 578999999999999999999999999999999999999999644 49999999
Q ss_pred eeeee
Q 041120 334 SYPVK 338 (340)
Q Consensus 334 ~yp~~ 338 (340)
+||++
T Consensus 327 ~~p~v 331 (331)
T 3qj3_A 327 SVPTL 331 (331)
T ss_dssp EEEEC
T ss_pred eeeeC
Confidence 99986
No 3
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=100.00 E-value=6.4e-81 Score=590.50 Aligned_cols=282 Identities=45% Similarity=0.857 Sum_probs=249.4
Q ss_pred ChhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEEcccCCCCCHHHHHHhhcCCCCCCCC--
Q 041120 54 DPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADLSNEEFISTYLGYNKPYNE-- 131 (340)
Q Consensus 54 ~~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~~-- 131 (340)
++.++..+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||+++.+|++|+|+|+|||.+||++++++...+...
T Consensus 14 ~e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~~~ 93 (322)
T 1pci_A 14 STERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQ 93 (322)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSCTTTTSCHHHHHHHHCCCBCCCSSCC
T ss_pred chHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEecCccccCCHHHHHHHhcCCCCcccccc
Confidence 366788899999999999999889999999999999999999999878999999999999999999988876533211
Q ss_pred C---CCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCC
Q 041120 132 P---RWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNG 208 (340)
Q Consensus 132 ~---~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~G 208 (340)
. .+......+||++||||++|+||||||||.||||||||++++||+++++++|.+++||+|+|+||+. .+.||+|
T Consensus 94 ~~~~~~~~~~~~~lP~~~DwR~~g~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~--~~~gC~G 171 (322)
T 1pci_A 94 SYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKG 171 (322)
T ss_dssp CCSEECCCCCCCCSCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCT--TSCGGGC
T ss_pred ccccccccccccCCCCeEecccCCCCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcC--CCCCCCC
Confidence 1 1222233579999999999999999999999999999999999999999999999999999999986 4789999
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccc
Q 041120 209 GYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLY 266 (340)
Q Consensus 209 G~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y 266 (340)
|++..|++|+.++ ||++|++|||.+..+.|.........+++++|..++.. .+|++|
T Consensus 172 G~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~GPV~v~i~~~~~~f~~Y 250 (322)
T 1pci_A 172 GYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLY 250 (322)
T ss_dssp BCHHHHHHHHHHH-CBCBTTTSCCCSSCCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHHSCEEEEECTTCHHHHTE
T ss_pred CCHHHHHHHHHHh-CCCchhhCCCCCCCCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHHCCEEEEEeccccccccc
Confidence 9999999999998 69999999999999999876333356788899888753 369999
Q ss_pred cCceecCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 267 SHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 267 ~~Gi~~~~c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|||.++|+..++|||+|||||+++|++|||||||||++|||+|||||+|+.+.. .|.|||++.++||+++
T Consensus 251 ~~Gvy~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~-~n~CgI~~~~~yp~~~ 322 (322)
T 1pci_A 251 KGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS-PGVCGLYKSSYYPTKN 322 (322)
T ss_dssp EEEEECCSCCSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBS-SCGGGGGGCCEEECCC
T ss_pred CCeEeCCCCCCCCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCC-CCcCCcccceeEEEeC
Confidence 99999988988889999999999999999999999999999999999999996322 3569999999999975
No 4
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=100.00 E-value=1.5e-80 Score=588.58 Aligned_cols=278 Identities=43% Similarity=0.816 Sum_probs=244.3
Q ss_pred CCChhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC---C-CceEEEcccCCCCCHHHHHHhhcCCCC
Q 041120 52 KYDPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ---N-LSFKLTDNKFADLSNEEFISTYLGYNK 127 (340)
Q Consensus 52 ~~~~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~---~-~s~~~g~N~FsDlt~eEf~~~~~g~~~ 127 (340)
.+++..+...|++|+++|+|.|.+.+|+.+|+.||++|+++|++||++ + .+|++|+|+|+|||.|||++ +++.++
T Consensus 17 ~~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~-~~g~~~ 95 (329)
T 3qt4_A 17 SLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLA-YVNRGK 95 (329)
T ss_dssp ---CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHH-HHHHTC
T ss_pred ccCHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHH-hcCCcc
Confidence 445778999999999999999998889999999999999999999985 3 79999999999999999999 776443
Q ss_pred CCC--CC-----CCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCC
Q 041120 128 PYN--EP-----RWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVN 200 (340)
Q Consensus 128 ~~~--~~-----~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~ 200 (340)
+.. .. .+.... .+||++||||++ +||||||||.||||||||++++||++++++++++++||||+|+||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~lP~~~DwR~~-~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC~~~ 173 (329)
T 3qt4_A 96 AQKPKHPENLRMPYVSSK-KPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSS 173 (329)
T ss_dssp CC------CCEEECCCCC-SCCCSCEECTTT-SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGG
T ss_pred cccccccccccccccCCc-cCCCCCEEcccc-ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHhccc
Confidence 211 00 122122 479999999999 999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC--------------------
Q 041120 201 SENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-------------------- 260 (340)
Q Consensus 201 ~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-------------------- 260 (340)
+++.||+||++..|++|++++ ||++|++|||.+.++.|.... ....+++++|..++..
T Consensus 174 ~g~~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~ 251 (329)
T 3qt4_A 174 YGNAGCDGGWMDSAFSYIHDY-GIMSESAYPYEAQGDYCRFDS-SQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251 (329)
T ss_dssp GTCCTTBCCCHHHHHHHHHHS-CBCBTTTSCCCSSCCCCCCCG-GGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEEC
T ss_pred cCCCCCCCCChhHHHHHHHHc-CCCcHHHeeeecCCCCCCCCc-ccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEe
Confidence 568899999999999999999 899999999999999998763 4456788999888753
Q ss_pred --cccccccCceecCC-CC-CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceee
Q 041120 261 --YAFQLYSHGVFDEY-CG-HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYP 336 (340)
Q Consensus 261 --~~f~~y~~Gi~~~~-c~-~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp 336 (340)
.+|++|++|||..+ |+ ..++|||+|||||+++|++|||||||||++|||+|||||+|+.+| .|||++.++||
T Consensus 252 a~~~f~~Y~~GVy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~CgI~~~~~yp 327 (329)
T 3qt4_A 252 ATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGN----NCGIATAASYP 327 (329)
T ss_dssp CCGGGTTEEEEEECCSSCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSS----GGGTTTTCEEE
T ss_pred cChhhhhccCceeecCCCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCC----ccCCCCceeEe
Confidence 48999999999986 86 578999999999999999999999999999999999999999644 49999999999
Q ss_pred ee
Q 041120 337 VK 338 (340)
Q Consensus 337 ~~ 338 (340)
++
T Consensus 328 ~v 329 (329)
T 3qt4_A 328 AL 329 (329)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 5
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=100.00 E-value=4.5e-80 Score=583.37 Aligned_cols=279 Identities=44% Similarity=0.787 Sum_probs=244.1
Q ss_pred hhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC---C-CceEEEcccCCCCCHHHHHHhhcCCCCCCC
Q 041120 55 PQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ---N-LSFKLTDNKFADLSNEEFISTYLGYNKPYN 130 (340)
Q Consensus 55 ~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~---~-~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~ 130 (340)
+.++..+|++|+++|+|.|.+.+|+.+|+.+|++|+++|++||++ + .+|++|+|+|+|||.+||++++++.+.+..
T Consensus 5 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~ 84 (315)
T 2c0y_A 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQ 84 (315)
T ss_dssp CGGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCG
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCcc
Confidence 557788999999999999988889999999999999999999985 2 789999999999999999988877654321
Q ss_pred C---CCCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhcc-CCCCCCCC
Q 041120 131 E---PRWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCD-VNSENQGC 206 (340)
Q Consensus 131 ~---~~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~-~~~~~~gC 206 (340)
. ..+......+||++||||++|+||||||||.||||||||++++||+++++++|..++||||+|+||+ ..+++.||
T Consensus 85 ~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvdC~~~~~~~~gC 164 (315)
T 2c0y_A 85 WQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGC 164 (315)
T ss_dssp GGSCBCC------CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGG
T ss_pred ccCCccccCcccCCCCCeEecCCCCCcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHhhcccccCCCCC
Confidence 1 1121111237999999999999999999999999999999999999999999999999999999998 54458899
Q ss_pred CCCchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------------ccc
Q 041120 207 NGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-----------------------YAF 263 (340)
Q Consensus 207 ~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-----------------------~~f 263 (340)
+||++..|++|+.+++||++|++|||.+..+.|.... ....+++++|..++.. .+|
T Consensus 165 ~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f 243 (315)
T 2c0y_A 165 NGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSF 243 (315)
T ss_dssp GCBCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCG-GGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHH
T ss_pred CCCCHHHHHHHHHHhCCcCchhcCCCccCCCCcccCC-cccccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhh
Confidence 9999999999999766999999999999999998763 3456788999888753 369
Q ss_pred ccccCceecCC-CCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 264 QLYSHGVFDEY-CGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 264 ~~y~~Gi~~~~-c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
++|++|||..+ |++.++|||+|||||+++|++|||||||||++|||+|||||+|+..| .|||++.++||++
T Consensus 244 ~~Y~~Gvy~~~~c~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~CgI~~~~~~p~~ 315 (315)
T 2c0y_A 244 FLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGN----HCGIASFPSYPEI 315 (315)
T ss_dssp HTEEEEEECCTTCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSCEEEEC
T ss_pred hccCCCcccCCCCCCcCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCC----ccCcCceeEEeeC
Confidence 99999999987 98889999999999999999999999999999999999999998534 4999999999985
No 6
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=100.00 E-value=1.1e-79 Score=580.34 Aligned_cols=277 Identities=43% Similarity=0.802 Sum_probs=242.7
Q ss_pred hhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC---C-CceEEEcccCCCCCHHHHHHhhcCCCCCCC
Q 041120 55 PQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ---N-LSFKLTDNKFADLSNEEFISTYLGYNKPYN 130 (340)
Q Consensus 55 ~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~---~-~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~ 130 (340)
+.++..+|++|+++|+|+|.+.+|+.+|+.+|++|+++|++||++ + .+|++|+|+|+|||.+||++++++...+..
T Consensus 4 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~ 83 (314)
T 1by8_A 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLS 83 (314)
T ss_dssp -CTHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSC
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCcc
Confidence 346788999999999999998899999999999999999999985 2 789999999999999999988887654321
Q ss_pred C----CCCCCC-CCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCC
Q 041120 131 E----PRWPSV-QYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQG 205 (340)
Q Consensus 131 ~----~~~~~~-~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~g 205 (340)
. ..+... ....||++||||++|+||||||||.||||||||+++++|+++++++|.+++||||+|+||+. ++.|
T Consensus 84 ~~~~~~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~~--~~~g 161 (314)
T 1by8_A 84 HSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDG 161 (314)
T ss_dssp CCCSSSSSBCCCCSSCCCSCCBSTTTTCSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTCT--TSCG
T ss_pred cccCCccccccccccCCCCeEeCCCCCCCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcC--CCCC
Confidence 1 112111 11239999999999999999999999999999999999999999999999999999999996 4889
Q ss_pred CCCCchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------------cc
Q 041120 206 CNGGYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-----------------------YA 262 (340)
Q Consensus 206 C~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-----------------------~~ 262 (340)
|+||++..|++|+.+++||++|++|||.+..+.|.... ....+++++|..++.. .+
T Consensus 162 C~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~ 240 (314)
T 1by8_A 162 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNP-TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTS 240 (314)
T ss_dssp GGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCCCCCCCG-GGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHH
T ss_pred CcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCCCcCCCC-ccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHH
Confidence 99999999999999766999999999999999998753 3356788899888753 36
Q ss_pred cccccCceecCC-CCC-CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 263 FQLYSHGVFDEY-CGH-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 263 f~~y~~Gi~~~~-c~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
|++|++|||..+ |+. .++|||+|||||+++|++|||||||||++|||+|||||+|+..| .|||++.++||++
T Consensus 241 f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~CgI~~~~~~p~~ 314 (314)
T 1by8_A 241 FQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN----ACGIANLASFPKM 314 (314)
T ss_dssp HHTEEEECBCCTTCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSC----GGGTTSSCEEECC
T ss_pred hhhccCceecCCCCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCC----cCCccCeeEEeeC
Confidence 999999999987 885 78999999999999999999999999999999999999998544 4999999999985
No 7
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=100.00 E-value=3.3e-79 Score=577.72 Aligned_cols=276 Identities=42% Similarity=0.833 Sum_probs=242.3
Q ss_pred hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC----CCceEEEcccCCCCCHHHHHHhhcCCCCCCCCC
Q 041120 57 SMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNKFADLSNEEFISTYLGYNKPYNEP 132 (340)
Q Consensus 57 ~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~----~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~~~ 132 (340)
.+..+|++|+++|+|+| +.+|+.+|+.+|++|+++|++||++ ..+|++|+|+|+|||.+||++++++.+.+....
T Consensus 7 ~~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~~ 85 (316)
T 1cs8_A 7 SLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRK 85 (316)
T ss_dssp GGHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCCSC
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCcccc
Confidence 57789999999999999 7889999999999999999999985 378999999999999999998888755332111
Q ss_pred --CCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCc
Q 041120 133 --RWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGY 210 (340)
Q Consensus 133 --~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~ 210 (340)
.+......+||++||||++|+||||||||.||||||||++++||+++++++|++++||||+|+||+..+++.||+||+
T Consensus 86 ~~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~ 165 (316)
T 1cs8_A 86 GKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL 165 (316)
T ss_dssp CEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC
T ss_pred CccccCccccCCCCcEecCCCCCcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhccccCCCCCCCCC
Confidence 122122237999999999999999999999999999999999999999999999999999999999754578999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccC
Q 041120 211 MEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSH 268 (340)
Q Consensus 211 ~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~ 268 (340)
+..|++|+.+++||++|++|||.+..+.|.... ....+++++|..++.+ .+|++|++
T Consensus 166 ~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~ 244 (316)
T 1cs8_A 166 MDYAFQYVQDNGGLDSEESYPYEATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 244 (316)
T ss_dssp HHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCG-GGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEE
T ss_pred HHHHHHHHHHhCCcCchhccCCCCCCCCcCCCC-ccceeEeccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccC
Confidence 999999998666999999999999999998763 3456788899888754 36999999
Q ss_pred ceecCC-CCC-CCCeEEEEEEEe---ec-CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 269 GVFDEY-CGH-QLNHGVTVVGYG---ED-HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 269 Gi~~~~-c~~-~~~Hav~iVGyg---~~-~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
|||..+ |+. .++|||+||||| ++ +|++|||||||||++|||+|||||+|+.+| .|||++.++||++
T Consensus 245 Gvy~~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~CgI~~~~~~p~~ 316 (316)
T 1cs8_A 245 GIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPTV 316 (316)
T ss_dssp EEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSCEEECC
T ss_pred ceECCCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCC----ccCccceeeEeeC
Confidence 999987 885 789999999999 66 799999999999999999999999998644 4999999999985
No 8
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=100.00 E-value=2e-78 Score=570.98 Aligned_cols=271 Identities=39% Similarity=0.790 Sum_probs=236.7
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC----CCceEEEcccCCCCCHHHHHHhhcC-CCCCCCC--C
Q 041120 60 ERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ----NLSFKLTDNKFADLSNEEFISTYLG-YNKPYNE--P 132 (340)
Q Consensus 60 ~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~----~~s~~~g~N~FsDlt~eEf~~~~~g-~~~~~~~--~ 132 (340)
.+|++|+++|+|+|.+.+|+.+| .+|++|+++|++||++ ..+|++|+|+|+|||.+||++++++ .+.+... .
T Consensus 3 ~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~ 81 (310)
T 2o6x_A 3 DLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSH 81 (310)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGGGSCS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCccccccc
Confidence 47999999999999877899999 9999999999999986 3789999999999999999988887 4432111 1
Q ss_pred --CCCCCCCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCc
Q 041120 133 --RWPSVQYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGY 210 (340)
Q Consensus 133 --~~~~~~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~ 210 (340)
.+...+. +||++||||++|+||||||||.||||||||++++||++++++++.+++||||+|+||+..+++.||+||+
T Consensus 82 ~~~~~~~~~-~lP~~~DwR~~g~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~ 160 (310)
T 2o6x_A 82 GVPYEANNR-AVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGL 160 (310)
T ss_dssp SEECCC-----CCSCEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCC
T ss_pred CCccccccC-CCCCeEecCcCCCCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCC
Confidence 1221122 6999999999999999999999999999999999999999999999999999999998754578999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccC
Q 041120 211 MEKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSH 268 (340)
Q Consensus 211 ~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~ 268 (340)
+..|++|+.. +||++|++|||.+..+.|.... ....+++++|..++.. .+|++|++
T Consensus 161 ~~~a~~yi~~-~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~ 238 (310)
T 2o6x_A 161 MENAYQYLKQ-FGLETESSYPYTAVEGQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRS 238 (310)
T ss_dssp HHHHHHHHTT-SCBCBTTTSCCCSSCCCCCCCG-GGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEE
T ss_pred HHHHHHHHHH-CCcCchhcCCCCCCCCCccCCC-CCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCC
Confidence 9999999985 5899999999999999998753 3456889999888743 47999999
Q ss_pred ceecCC-CC-CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 269 GVFDEY-CG-HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 269 Gi~~~~-c~-~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
|||..+ |+ ..++|||+|||||+++|++|||||||||++|||+|||||+|+.+| .|||++.++||++
T Consensus 239 Gvy~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n----~Cgi~~~~~~p~~ 306 (310)
T 2o6x_A 239 GIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGN----MCGIASLASLPMV 306 (310)
T ss_dssp EEECCSSCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSEEEEEE
T ss_pred ceecCCCCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCC----cCCccceeeEEEe
Confidence 999865 87 478999999999999999999999999999999999999998544 4999999999986
No 9
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=100.00 E-value=3.8e-74 Score=541.33 Aligned_cols=260 Identities=31% Similarity=0.561 Sum_probs=226.0
Q ss_pred HHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEEcccCCCCCHHHHHHhhcCCCCCCC----CCCCCC
Q 041120 61 RFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADLSNEEFISTYLGYNKPYN----EPRWPS 136 (340)
Q Consensus 61 ~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~----~~~~~~ 136 (340)
+|++|+++|+|.|.+.+|+.+|+.+|++|+++|++ |+ + |+|+|+|||.+||++++++.+.+.. ...+..
T Consensus 7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~-N~---~---g~N~F~Dlt~eEf~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T 1xkg_A 7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NG---G---AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNA 79 (312)
T ss_dssp SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH-HC---C---CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-cc---C---CCCcccCCCHHHHHHHhcCCCCccccccCCccccc
Confidence 59999999999998889999999999999999999 75 2 9999999999999987766321110 001111
Q ss_pred C-----CCCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCch
Q 041120 137 V-----QYLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYM 211 (340)
Q Consensus 137 ~-----~~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~ 211 (340)
. ...+||++||||++|+||||||||.||||||||++++||+++++++|..++||||+|+||+. ..||+||++
T Consensus 80 ~~~~~~~~~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~---~~GC~GG~~ 156 (312)
T 1xkg_A 80 ETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS---QHGCHGDTI 156 (312)
T ss_dssp --CBCCCCSCCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC---SSTTBCCCH
T ss_pred ccccccccccCCCccccccCCCcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhccC---CCCCCCCCH
Confidence 1 12379999999999999999999999999999999999999999999999999999999982 389999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------------c--ccccc
Q 041120 212 EKAFEFITKIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-----------------------Y--AFQLY 266 (340)
Q Consensus 212 ~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-----------------------~--~f~~y 266 (340)
..|++|+.+. ||++|++|||.+..+.|. . .....+++++|..++.. . +|++|
T Consensus 157 ~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~-~-~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y 233 (312)
T 1xkg_A 157 PRGIEYIQHN-GVVQESYYRYVAREQSCR-R-PNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHY 233 (312)
T ss_dssp HHHHHHHHHH-CEEBGGGSCCCSSCCCCC-C-CSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTC
T ss_pred HHHHHHHHHc-CCCccccCCccCCCCCCC-C-CCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccccccccc
Confidence 9999999996 899999999999999998 4 34456889999888642 3 89999
Q ss_pred cCceecCC-CC-C-CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 267 SHGVFDEY-CG-H-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 267 ~~Gi~~~~-c~-~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|||..+ |+ . . +|||+|||||+++|++|||||||||++|||+|||||+|+ .| .|||++.++||++.
T Consensus 234 ~~GVy~~~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~-~n----~CgI~~~~~~~~~~ 303 (312)
T 1xkg_A 234 DGRTIIQRDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAAN-ID----LMMIEEYPYVVILG 303 (312)
T ss_dssp CSSSCBCCCCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECS-SC----GGGTTTCCEEEECT
T ss_pred CCcEEcCCCCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcC-CC----cccccceeEEeecc
Confidence 99999875 87 4 5 999999999999999999999999999999999999998 34 49999999999974
No 10
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=100.00 E-value=5.7e-67 Score=511.80 Aligned_cols=252 Identities=30% Similarity=0.569 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEE-cccCCCCCHHHHHHhhcCCCCCCCC---CC---CCCCCCCCCCCeeecc
Q 041120 77 DEWQRRFGIYSSNVQYIDYINSQNLSFKLT-DNKFADLSNEEFISTYLGYNKPYNE---PR---WPSVQYLGLPASVDWR 149 (340)
Q Consensus 77 ~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g-~N~FsDlt~eEf~~~~~g~~~~~~~---~~---~~~~~~~~lP~~~Dwr 149 (340)
.|+.+|++||++|+++|++||+++.+|+++ +|+|+|||.+||++++++.+.+... .. .......+||++||||
T Consensus 135 ~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR 214 (441)
T 3pdf_A 135 SQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDWR 214 (441)
T ss_dssp -----------------------------------------------------------------------CCCSCEETT
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHHHHHhCCCcccccccccCccccccccccccCCCCEECC
Confidence 567899999999999999999988899998 8999999999999988765432111 11 1122345899999999
Q ss_pred CCC---CCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCcc--ccChhHhhhccCCCCCCCCCCCchHHH-HHHHHHhCC
Q 041120 150 KEG---AVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLV--SLSEQELVDCDVNSENQGCNGGYMEKA-FEFITKIGG 223 (340)
Q Consensus 150 ~~g---~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~--~LS~q~l~dc~~~~~~~gC~GG~~~~a-~~~i~~~~G 223 (340)
+++ +||||||||.||||||||++++||++++|+++..+ .||||+|+||+.. +.||+||++..| ++|++++ |
T Consensus 215 ~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~--~~GC~GG~~~~aa~~yi~~~-G 291 (441)
T 3pdf_A 215 NVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY--AQGCEGGFPYLIAGKYAQDF-G 291 (441)
T ss_dssp CBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHTTHHHHHT-C
T ss_pred cCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccC--CCCCCCCchhHHHHHHHHhc-C
Confidence 964 89999999999999999999999999999998765 5999999999974 889999999997 8999887 8
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCC-----C---------------------cccccccCceecCC-CC
Q 041120 224 VTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPA-----R---------------------YAFQLYSHGVFDEY-CG 276 (340)
Q Consensus 224 i~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~-----~---------------------~~f~~y~~Gi~~~~-c~ 276 (340)
|++|++|||.+..+.|.... ....+.+.+|..++. + .+|++|++|||..+ |.
T Consensus 292 i~tE~~yPY~~~~~~C~~~~-~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~~~~~ 370 (441)
T 3pdf_A 292 LVEEACFPYTGTDSPCKMKE-DCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR 370 (441)
T ss_dssp BCBGGGSCCCSSCCCSCCCS-SCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECCC---
T ss_pred CCcHHHeeecccCCCCCCcc-ccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceEecCCCC
Confidence 99999999999999998753 334556677777652 1 68999999999876 32
Q ss_pred ------CCCCeEEEEEEEeec--CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeee
Q 041120 277 ------HQLNHGVTVVGYGED--HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337 (340)
Q Consensus 277 ------~~~~Hav~iVGyg~~--~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~ 337 (340)
..++|||+|||||++ +|++|||||||||++|||+|||||+|+. | .|||++.++++.
T Consensus 371 ~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~-n----~CGI~s~~~a~~ 434 (441)
T 3pdf_A 371 DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGT-D----ECAIESIAVAAT 434 (441)
T ss_dssp CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSS-C----GGGTTSCCEEEE
T ss_pred cccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCC-C----ccCCCCceEEee
Confidence 248999999999986 6899999999999999999999999985 4 499999987653
No 11
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=100.00 E-value=2e-65 Score=484.73 Aligned_cols=249 Identities=28% Similarity=0.490 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHHhccCC-CceEEEcc-cCCCCCHHHHHHhhcCCCCCCCC----C--CCCCCC-CCCCCCeeeccC
Q 041120 80 QRRFGIYSSNVQYIDYINSQN-LSFKLTDN-KFADLSNEEFISTYLGYNKPYNE----P--RWPSVQ-YLGLPASVDWRK 150 (340)
Q Consensus 80 ~~R~~iF~~Nl~~I~~~N~~~-~s~~~g~N-~FsDlt~eEf~~~~~g~~~~~~~----~--~~~~~~-~~~lP~~~Dwr~ 150 (340)
+.|+..+..+.++|++||+++ .+|++++| +|+|||.|||++++ +....... . .+...+ ..+||++||||+
T Consensus 2 ~~~~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~ 80 (325)
T 3hhi_A 2 LVAEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLN-GVIKKNNNASILPKRRFTEEEARAPLPSSFDSAE 80 (325)
T ss_dssp -------------------------------------------------------CCSCBCCCCHHHHHCCCCSCEEHHH
T ss_pred CcccccccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHh-CCCCCCcccccccCccccccccccCCCCcEehhH
Confidence 357788888999999999976 89999999 89999999998864 43321111 1 111111 257999999999
Q ss_pred C----CCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCC-ccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHhCCCC
Q 041120 151 E----GAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGK-LVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVT 225 (340)
Q Consensus 151 ~----g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~-~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~~Gi~ 225 (340)
+ |.||||||||.||||||||++++||++++|+++. +++||||+|+||+.. .+.||+||++..|++|++++ ||+
T Consensus 81 ~w~~~g~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~-~~~GC~GG~~~~A~~yi~~~-Gi~ 158 (325)
T 3hhi_A 81 AWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSD-CGDGCNGGDPDRAWAYFSST-GLV 158 (325)
T ss_dssp HSTTCTTTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGG-GBCTTBCBCHHHHHHHHHHT-CBC
T ss_pred hcCCCCccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccC-CCCCCCCCCHHHHHHHHHHh-CCC
Confidence 8 8999999999999999999999999999999997 899999999999874 46899999999999999998 899
Q ss_pred CCCCCCCC-CC----------CCCcCCC--------------C-CCceeEEeceeEEcCCC-------------------
Q 041120 226 TEDDYPYR-GK----------NDRCQTD--------------K-TKHHAVTITGYEAIPAR------------------- 260 (340)
Q Consensus 226 ~e~~yPy~-~~----------~~~c~~~--------------~-~~~~~~~i~~y~~~~~~------------------- 260 (340)
+|++|||. +. .+.|... . .......+.+|. + .+
T Consensus 159 ~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~-v-~~~~~i~~~i~~~GPV~v~i~ 236 (325)
T 3hhi_A 159 SDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYA-L-QGEDDYMRELFFRGPFEVAFD 236 (325)
T ss_dssp BTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEE-E-CSHHHHHHHHHHHCCEEEEEE
T ss_pred cccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecceE-e-CCHHHHHHHHHHCCCEEEEEE
Confidence 99999998 32 2556510 0 001123455665 3 22
Q ss_pred --cccccccCceecCCCCC-CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeee
Q 041120 261 --YAFQLYSHGVFDEYCGH-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337 (340)
Q Consensus 261 --~~f~~y~~Gi~~~~c~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~ 337 (340)
.+|++|++|||..+|+. .++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.+++++
T Consensus 237 ~~~~f~~Y~~GVy~~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~-n----~CGI~~~~~~g~ 311 (325)
T 3hhi_A 237 VYEDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGS-S----ECGIEDGGSAGI 311 (325)
T ss_dssp EEHHHHTCCSSEECCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSS-C----GGGTTSCEEEEE
T ss_pred eccccccccCceecCCCCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCC-C----eecCccceEEee
Confidence 57999999999987664 469999999999999999999999999999999999999985 4 499999988776
Q ss_pred e
Q 041120 338 K 338 (340)
Q Consensus 338 ~ 338 (340)
.
T Consensus 312 p 312 (325)
T 3hhi_A 312 P 312 (325)
T ss_dssp E
T ss_pred c
Confidence 3
No 12
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=100.00 E-value=5.6e-63 Score=444.96 Aligned_cols=196 Identities=55% Similarity=1.093 Sum_probs=178.2
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||++++||+++++++++.++||||+|+||+...++.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~lE~~~~i~~~~~~~LS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~ 80 (220)
T 3p5u_A 1 LPDYVDWRSSGAVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFIINN 80 (220)
T ss_dssp CCSCEETTTTTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCCSSCCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHhHcEECCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999986558899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
+|+++|++|||.+..+.|.........+++.+|..++.. .+|++|++|||..+|+..+
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~l~~~l~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~~~ 160 (220)
T 3p5u_A 81 GGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAV 160 (220)
T ss_dssp TCBCBTTTSCCCSSCCCCCHHHHTCCSBCCCEEEECCTTCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCCCCSC
T ss_pred CCcCcccccccccCCCCcCcCCCCCceEEEccEEEeCCCcHHHHHHHHhcCCEEEEEecCchhhccccCceECCCCCCcc
Confidence 889999999999999999864333345678888887643 3699999999998898889
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+++|++|||||||||++|||+|||||+|+.++ .|.|||++.++||+++
T Consensus 161 ~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~--~~~Cgi~~~~~~p~~~ 218 (220)
T 3p5u_A 161 DHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGG--VGQCGIAKKASYPVKY 218 (220)
T ss_dssp CEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCCT--TCGGGTTSSCEEEECS
T ss_pred ceEEEEEEEecCCCceEEEEECCCCCCcccCCEEEEECCCCC--CCccCcccccceEEEe
Confidence 999999999999999999999999999999999999999653 4679999999999975
No 13
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=100.00 E-value=7e-62 Score=436.57 Aligned_cols=194 Identities=52% Similarity=1.039 Sum_probs=176.1
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|++++++++..++||||+|+||+. .+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~yi~~~ 78 (216)
T 1ppo_A 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVAKN 78 (216)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCS--SSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccC--CCCCCCCCCHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999999999986 37899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
|+++|++|||.+..+.|+........+++++|..++.. .+|++|++|||..+|++.+
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~~~ 157 (216)
T 1ppo_A 79 -GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKV 157 (216)
T ss_dssp -CBCBTTTSCCCSSCCCCCGGGCCSCCBCCCEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCSCCSCC
T ss_pred -CcCccccCCccCCCCCcCCCCCCCceEEeccEEEECCCCHHHHHHHHHhCCEEEEEecCChhhhhcCCceECCCCCCCC
Confidence 79999999999999999865333456788888887653 3699999999998898888
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+++|++|||||||||++|||+|||||+|+.++. .|.|||+++++||+++
T Consensus 158 ~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~-~n~Cgi~~~~~~p~~~ 216 (216)
T 1ppo_A 158 DHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS-PGVCGLYKSSYYPTKN 216 (216)
T ss_dssp CEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSS-SCGGGTTSCCEEEECC
T ss_pred CEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCC-CCcCccccceeeEeeC
Confidence 9999999999999999999999999999999999999996332 4569999999999975
No 14
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=100.00 E-value=9.1e-62 Score=437.27 Aligned_cols=195 Identities=55% Similarity=1.100 Sum_probs=177.0
Q ss_pred CCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHH
Q 041120 141 GLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITK 220 (340)
Q Consensus 141 ~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~ 220 (340)
+||++||||++|+|+||||||.||||||||+++++|++++++++..++||||+|+||+.. +.||+||++..|++|+++
T Consensus 2 ~lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~y~~~ 79 (221)
T 1cqd_A 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA--NHGCRGGWMNPAFQFIVN 79 (221)
T ss_dssp -CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHH
T ss_pred CCCCcCcCCCCCCcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCC--CCCCCCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999875 789999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCC
Q 041120 221 IGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQ 278 (340)
Q Consensus 221 ~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~ 278 (340)
++||++|++|||.+..+.|.... ....+++++|..++.. .+|++|++|||..+|+..
T Consensus 80 ~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~~ 158 (221)
T 1cqd_A 80 NGGINSEETYPYRGQDGICNSTV-NAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNIS 158 (221)
T ss_dssp HTSBCBTTTSCCCSSCCCCCSSS-CCCSBCCSEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCCCCCC
T ss_pred hCCccccccCCccCCCCCcCCCC-CCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEeccCcccccccCccccCCCCCc
Confidence 87899999999999999998753 3456788888877643 379999999999889888
Q ss_pred CCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 279 LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 279 ~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|||+|||||+++|++|||||||||++|||+|||||+|+.++. .|.|||+++++||++.
T Consensus 159 ~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~-~~~Cgi~~~~~~p~~~ 218 (221)
T 1cqd_A 159 ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENP-DGKCGITRFASYPVKK 218 (221)
T ss_dssp CCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSST-TCGGGTTSSCEEEECC
T ss_pred CCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCC-CcccceeeeeeEEEec
Confidence 99999999999999999999999999999999999999986432 4679999999999974
No 15
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=100.00 E-value=3.2e-62 Score=461.81 Aligned_cols=241 Identities=29% Similarity=0.589 Sum_probs=190.8
Q ss_pred HHHHHHHhccCCCceEEEcccCCCCCHHHHHHhhcCCCCCCCC--CCCCCCCCCCCCCeeeccCC----CCCCccCCCCC
Q 041120 89 NVQYIDYINSQNLSFKLTDNKFADLSNEEFISTYLGYNKPYNE--PRWPSVQYLGLPASVDWRKE----GAVTPVKDQGQ 162 (340)
Q Consensus 89 Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~g~~~~~~~--~~~~~~~~~~lP~~~Dwr~~----g~vtpV~nQg~ 162 (340)
+.++|++||+++.+|++++| |+|+|.||++. ++|.+..... .++......+||++||||++ +.||||||||.
T Consensus 11 ~~~~i~~~N~~~~~~~~~~n-f~~~~~e~~~~-~lg~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~~~c~~vtpVkdQg~ 88 (317)
T 3pbh_A 11 SDELVNYVNKRNTTWQAGHN-FYNVDMSYLKR-LCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGS 88 (317)
T ss_dssp CHHHHHHHHHHTCSEEECCC-CSSCCHHHHHH-TCCBCTTCCCCSEEECCCSCCCCCSSEEHHHHCTTCGGGTCCCBCCS
T ss_pred cHHHHHHHHCCCCCeEEeec-cccCCHHHHHH-HcCCCCCccccCcccccccccCCCCCEechhccCCCCCcCCccccCC
Confidence 46789999988889999999 99888877765 5665543221 11222223589999999987 68999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHcCC--ccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHhCCCCCCCCC-------CCC
Q 041120 163 CGSCWAFSAVAAVEGINKLKTGK--LVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDDY-------PYR 233 (340)
Q Consensus 163 cGsCwAfA~~~~lE~~~~~~~~~--~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~y-------Py~ 233 (340)
||||||||++++||++++|+++. .+.||||+|+||+....+.||+||++..|++|++++ ||++|++| ||.
T Consensus 89 CGSCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~-Gi~te~~Y~~~~~c~PY~ 167 (317)
T 3pbh_A 89 CGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRK-GLVSGGLYESHVGCRPYS 167 (317)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHT-CEEBBCSTTCCCBSSCCC
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHh-CCCcchhccCCCCCcCcc
Confidence 99999999999999999999875 799999999999873357899999999999999998 89999988 998
Q ss_pred C---------CCCCcCCCCCC-------ceeE---------EeceeEEcCCC---------------------ccccccc
Q 041120 234 G---------KNDRCQTDKTK-------HHAV---------TITGYEAIPAR---------------------YAFQLYS 267 (340)
Q Consensus 234 ~---------~~~~c~~~~~~-------~~~~---------~i~~y~~~~~~---------------------~~f~~y~ 267 (340)
. ..+.|...... .... .......++.+ .+|++|+
T Consensus 168 ~~~c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~ 247 (317)
T 3pbh_A 168 IPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYK 247 (317)
T ss_dssp SCCCCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEE
T ss_pred cCcccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCC
Confidence 4 34456421000 0000 00111233322 6899999
Q ss_pred CceecCCCCCC-CCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeee
Q 041120 268 HGVFDEYCGHQ-LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPV 337 (340)
Q Consensus 268 ~Gi~~~~c~~~-~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~ 337 (340)
+|||..+|+.. ++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.++.++
T Consensus 248 ~GVy~~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~-n----~CgI~~~~~a~~ 313 (317)
T 3pbh_A 248 SGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ-D----HCGIESEVVAGI 313 (317)
T ss_dssp EEEECCCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSS-C----GGGTTTSCEECC
T ss_pred CcEEccCCCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCC-C----cccCCCceEeee
Confidence 99999887754 59999999999999999999999999999999999999985 3 499999987654
No 16
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=100.00 E-value=1.3e-61 Score=435.42 Aligned_cols=194 Identities=52% Similarity=1.053 Sum_probs=176.0
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+|+||||||.||||||||+++++|++++++++..++||||+|+||+. .+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~~~~~~ 78 (218)
T 1yal_A 1 YPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--HSYGCKGGYQTTSLQYVANN 78 (218)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcC--CCCCCCCCCHHHHHHHHHHc
Confidence 6999999999999999999999999999999999999999999999999999999984 47899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
|+++|++|||.+..+.|+........+++++|..++.. .+|++|++|||.++|++.+
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~~~ 157 (218)
T 1yal_A 79 -GVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKL 157 (218)
T ss_dssp -CBCBTTTSCCCSSCCCCCGGGCCSCCBCCSEEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCSCC
T ss_pred -CCCccccccccCCCCCcccCcCCCceEEEeeEEEeCCCCHHHHHHHHHhCCEEEEEeccchhccccCCceECCCCCCCC
Confidence 69999999999999999875333456788888887653 3699999999998898888
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+++|++|||||||||++|||+|||||+|+.++. .|.|||++.++||+++
T Consensus 158 ~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~~~Cgi~~~~~~p~~~ 216 (218)
T 1yal_A 158 DHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNS-QGTCGVYKSSYYPFKG 216 (218)
T ss_dssp CEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBS-CCGGGTTSSCEEEECC
T ss_pred CEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCC-CCccccccceeeEEEe
Confidence 9999999999999999999999999999999999999986322 4569999999999986
No 17
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=100.00 E-value=1.4e-61 Score=434.32 Aligned_cols=193 Identities=54% Similarity=1.083 Sum_probs=176.0
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+|+||||||.||||||||+++++|+++++++++.++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~~~ 78 (215)
T 1iwd_A 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA--SHGCNGGWMNNAFQYIITN 78 (215)
T ss_dssp CCSCEEGGGGTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCC--CCCCCCCCHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999864 7899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC---------------------c-ccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR---------------------Y-AFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~---------------------~-~f~~y~~Gi~~~~c~~~~ 279 (340)
+|+++|++|||.+..+.|.... ...+++++|..++.. . +|+.|++|||..+|++.+
T Consensus 79 ~Gi~~e~~yPY~~~~~~C~~~~--~~~~~i~~~~~v~~~~~~~ik~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~~ 156 (215)
T 1iwd_A 79 GGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQ 156 (215)
T ss_dssp TCBCBTTTSCCCSSCCCCCTTC--CCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCCCC
T ss_pred CCcccccccCccCCCCCCCCCC--CceEEeCcEEEeCCCcHHHHHHHHHhCCEEEEEecCCcchhhcCCceECCCCCCcC
Confidence 7899999999999999998753 356778888877643 2 699999999998898888
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+++|++|||||||||++|||+|||||+|+.++. .|.|||++.++||+++
T Consensus 157 ~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~~~Cgi~~~~~~p~~~ 215 (215)
T 1iwd_A 157 NHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSYPTKA 215 (215)
T ss_dssp CEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSST-TCGGGTTSSCEEEECC
T ss_pred CEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCC-CCCCCccccceeeeeC
Confidence 9999999999999999999999999999999999999986422 3679999999999974
No 18
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=100.00 E-value=2.4e-61 Score=436.74 Aligned_cols=197 Identities=62% Similarity=1.165 Sum_probs=176.7
Q ss_pred CCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHH
Q 041120 141 GLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITK 220 (340)
Q Consensus 141 ~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~ 220 (340)
+||++||||++|+|+||||||.||||||||+++++|++++++++..++||||+|+||+.. .+.||+||++..|++|+++
T Consensus 1 ~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~-~~~gC~GG~~~~a~~y~~~ 79 (229)
T 1s4v_A 1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD-QNQGCNGGLMDYAFEFIKQ 79 (229)
T ss_dssp CCCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCS-SCCTTBCBCHHHHHHHHHH
T ss_pred CCCCCEeCCCCCCCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCC-CCCCCCCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999863 4789999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCC
Q 041120 221 IGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQ 278 (340)
Q Consensus 221 ~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~ 278 (340)
++|+++|++|||.+..+.|.........+++++|..++.. .+|++|++|||..+|+..
T Consensus 80 ~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Giy~~~c~~~ 159 (229)
T 1s4v_A 80 RGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTE 159 (229)
T ss_dssp HTCBCBTTTSCCCSSCCCCCHHHHTCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCCC
T ss_pred hCCccccccCCccCCCCCCCCCCCCCcEEEeeeEEEeCCccHHHHHHHHhcCCEEEEEEeCcHHHhhCCCcEECCCCCCC
Confidence 8789999999999999999864222345778888877643 469999999999889888
Q ss_pred CCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 279 LNHGVTVVGYGEDH-GEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 279 ~~Hav~iVGyg~~~-g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|||+|||||+++ |++|||||||||++|||+|||||+|+.++. .|.|||++.++||+++
T Consensus 160 ~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~-~~~Cgi~~~~~~p~~~ 220 (229)
T 1s4v_A 160 LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASYPIKK 220 (229)
T ss_dssp CCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSST-TCGGGTTSSCEEEECC
T ss_pred CCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCC-CCcCcccccceeeEec
Confidence 89999999999986 999999999999999999999999996322 4679999999999975
No 19
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=100.00 E-value=3.3e-61 Score=432.01 Aligned_cols=190 Identities=53% Similarity=1.015 Sum_probs=174.2
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|++++++++..++||+|+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~Dwr~~~~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~--~~gC~GG~~~~a~~~~~~~ 78 (215)
T 3kwz_A 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKN 78 (215)
T ss_dssp CTTCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCccCcCCCCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCC--CCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999973 8899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------------cccccccCceecCC-CC-
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-----------------------YAFQLYSHGVFDEY-CG- 276 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-----------------------~~f~~y~~Gi~~~~-c~- 276 (340)
+|+++|++|||.+..+.|.... .....++++|..++.. .+|++|++|||..+ |+
T Consensus 79 ~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~ 157 (215)
T 3kwz_A 79 RGIDSEDAYPYVGQEESCMYNP-TGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS 157 (215)
T ss_dssp TCEEBTTTSCCCSSCCCCCCCG-GGEEECCCCEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCT
T ss_pred CCccccccCCCccCCCccccCC-CCceeEecceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCCCCCC
Confidence 7899999999999999998763 4456788888888753 37999999999876 75
Q ss_pred CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 277 HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 277 ~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
..++|||+|||||+++|++|||||||||++|||+|||||+|+.+| .|||++.++||++
T Consensus 158 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n----~Cgi~~~~~~p~~ 215 (215)
T 3kwz_A 158 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNN----ACGIANLASFPKM 215 (215)
T ss_dssp TCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSS----GGGTTSSCEEECC
T ss_pred ChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCC----ccCcCCceeeeeC
Confidence 478999999999999999999999999999999999999999644 4999999999985
No 20
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=100.00 E-value=2.3e-61 Score=433.85 Aligned_cols=192 Identities=55% Similarity=1.010 Sum_probs=175.0
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhcc-CCCCCCCCCCCchHHHHHHHHH
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCD-VNSENQGCNGGYMEKAFEFITK 220 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~-~~~~~~gC~GG~~~~a~~~i~~ 220 (340)
||++||||++|+||||||||.||||||||+++++|+++++++++.++||+|+|+||+ ....+.||+||++..|++|+.+
T Consensus 2 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~~~ 81 (218)
T 3ovx_A 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIID 81 (218)
T ss_dssp CCSCEEGGGGTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHHHH
T ss_pred CCCCCCcccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 4445889999999999999987
Q ss_pred hCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-----------------------cccccccCceecCC-CC
Q 041120 221 IGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-----------------------YAFQLYSHGVFDEY-CG 276 (340)
Q Consensus 221 ~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-----------------------~~f~~y~~Gi~~~~-c~ 276 (340)
++|+++|++|||.+..+.|.... .....++.+|..++.. .+|++|++|||..+ |.
T Consensus 82 ~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~ 160 (218)
T 3ovx_A 82 NKGIDSDASYPYKAMDQKCQYDS-KYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT 160 (218)
T ss_dssp HTCEEBTTTSCCCSSCCCCCCCG-GGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCTTCC
T ss_pred hCCcCcccccCccCCCCcccCCC-ccceeeeccEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCCCCC
Confidence 66999999999999999998763 4456788888888653 36999999999976 87
Q ss_pred CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 277 HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 277 ~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
..++|||+|||||+++|++|||||||||++|||+|||||+|+..| .|||++.++||++
T Consensus 161 ~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n----~cgi~~~~~~p~~ 218 (218)
T 3ovx_A 161 QNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGN----HCGIASFPSYPEI 218 (218)
T ss_dssp SCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSCEEEEC
T ss_pred cccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCC----cccccCceeeeeC
Confidence 789999999999999999999999999999999999999998534 4999999999985
No 21
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=100.00 E-value=2.5e-61 Score=443.83 Aligned_cols=198 Identities=59% Similarity=1.119 Sum_probs=178.3
Q ss_pred CCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHH
Q 041120 140 LGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFIT 219 (340)
Q Consensus 140 ~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~ 219 (340)
.+||++||||++|+||||||||.||||||||+++++|+++++++++.++||||+|+||+.. .+.||+||++..|++|++
T Consensus 2 ~~lP~~~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~-~~~GC~GG~~~~a~~yi~ 80 (262)
T 2fo5_A 2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDGCQGGLMDNAFEYIK 80 (262)
T ss_dssp -CCCSCEETTTTTCCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCS-SCCGGGCBCHHHHHHHHH
T ss_pred CCCCCcccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCC-CCCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999864 478999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCcCCCC--CCce-eEEeceeEEcCCC----------------------cccccccCceecCC
Q 041120 220 KIGGVTTEDDYPYRGKNDRCQTDK--TKHH-AVTITGYEAIPAR----------------------YAFQLYSHGVFDEY 274 (340)
Q Consensus 220 ~~~Gi~~e~~yPy~~~~~~c~~~~--~~~~-~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~ 274 (340)
+++|+++|++|||.+..+.|.... .... .+++++|..++.. .+|++|++|||..+
T Consensus 81 ~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~i~~y~~v~~~~e~~ik~al~~GPV~v~i~~~~~~f~~Y~sGVy~~~ 160 (262)
T 2fo5_A 81 NNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE 160 (262)
T ss_dssp HTTCEEBTTTSCCCSSCCCCCHHHHHHHCCCEECCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCC
T ss_pred HcCCcCchhcCCCcCccCccCCcccccCCceeEEeceEEEcCCchHHHHHHHHHhCCEEEEEecChHHHhccCCceECCC
Confidence 987899999999999999998642 1234 6788899888753 37999999999988
Q ss_pred CCCCCCeEEEEEEEeec-CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 275 CGHQLNHGVTVVGYGED-HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 275 c~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
|++.++|||+|||||++ +|++|||||||||++|||+|||||+|+.++. .|+|||++.++||+++
T Consensus 161 c~~~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~-~~~CgI~~~~~~p~~~ 225 (262)
T 2fo5_A 161 CGTELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGAS-GGLCGIAMEASYPVKT 225 (262)
T ss_dssp CCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCT-TCGGGTTTSCEEEECC
T ss_pred CCCcCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCC-CCccceeeeeeEEEec
Confidence 98888999999999998 6999999999999999999999999996443 5789999999999975
No 22
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=100.00 E-value=4e-61 Score=430.81 Aligned_cols=190 Identities=49% Similarity=1.011 Sum_probs=173.9
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|+++++++++.++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~~~ 78 (213)
T 3ioq_A 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR--SYGCRGGFPLYALQYVANS 78 (213)
T ss_dssp CCSCEEGGGGTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCcccCCCCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCC--CCCCCCCCHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999974 8899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
|+++|++|||.+..+.|.........+++.+|..++.. .+|+.|++|||..+|+..+
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~~~~ 157 (213)
T 3ioq_A 79 -GIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSI 157 (213)
T ss_dssp -CEEBGGGSCCCSSCCCCCGGGCCSCEECCCEEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCCSCC
T ss_pred -CCCchhccCcCCCCCCCCCCccCCceEEeccEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCCCCCcc
Confidence 89999999999999999875344567788899888654 4699999999999888889
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+ +|||||||||++|||+|||||+|+.+.. .|.|||++.++||+++
T Consensus 158 ~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~-~~~Cgi~~~~~~p~~~ 212 (213)
T 3ioq_A 158 DHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNP-QGACGVLSDSVFPTKN 212 (213)
T ss_dssp CEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSST-TCGGGTTSCCEEEECC
T ss_pred CceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCC-CCcccccCcceEeEec
Confidence 99999999986 7999999999999999999999997432 4679999999999986
No 23
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=100.00 E-value=3e-61 Score=434.25 Aligned_cols=192 Identities=47% Similarity=0.987 Sum_probs=170.7
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|+++++++++.++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~~~~~ 78 (222)
T 3u8e_A 1 APASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX--XXXXXGGDADDAFRWVITN 78 (222)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC--------CCCHHHHHHHHHHH
T ss_pred CCCcCcCCcCCCCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCc--ccccCCCCHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999986 8899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC---------------------cccccccC-ceecC-CCCC-
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR---------------------YAFQLYSH-GVFDE-YCGH- 277 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~---------------------~~f~~y~~-Gi~~~-~c~~- 277 (340)
+||++|++|||.+..+.|...... .+++++|..++.. .+|++|++ |||.. +|+.
T Consensus 79 ~Gi~~e~~yPY~~~~~~C~~~~~~--~~~i~~~~~v~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~ 156 (222)
T 3u8e_A 79 GGIASDANYPYTGVDGTCDLNKPI--AARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDD 156 (222)
T ss_dssp TCBCBTTTSCCCSSCCCCCCCSCC--CBCCCEEEECCSCHHHHHHHHHHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCC
T ss_pred CCccchhcCCCcccCCccccCCCC--eEEEccEEEeCCcHHHHHHHHhCCCEEEEEEecChhhhcEeCCceECCCcccCC
Confidence 889999999999999999876332 6788888888633 37999999 99998 5876
Q ss_pred --CCCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 278 --QLNHGVTVVGYGEDH-GEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 278 --~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
.++|||+|||||+++ |++|||||||||++|||+|||||+|+.++. .|.|||++.++||++
T Consensus 157 ~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~-~g~Cgi~~~~~~p~~ 219 (222)
T 3u8e_A 157 PATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRP-DGVCAIDAWGSYPTK 219 (222)
T ss_dssp GGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCT-TCGGGTTSSCEEEEC
T ss_pred CCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCC-CCcCCccccceEEEE
Confidence 689999999999987 999999999999999999999999997543 678999999999986
No 24
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=100.00 E-value=8.9e-61 Score=428.84 Aligned_cols=190 Identities=45% Similarity=0.865 Sum_probs=171.2
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|++++++++..++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~~i~~~ 78 (214)
T 1m6d_A 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACMGGLPSNAYSAIKNL 78 (214)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSS--SCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCC--CCCCCCCCHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999864 7899999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC--------------------cccccccCceecCC---CCC-
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR--------------------YAFQLYSHGVFDEY---CGH- 277 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~--------------------~~f~~y~~Gi~~~~---c~~- 277 (340)
+|+++|++|||.+..+.|.... ....+++.++..++.+ .+|++|++|||.++ |+.
T Consensus 79 ~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~ 157 (214)
T 1m6d_A 79 GGLETEDDYSYQGHMQSCQFSA-EKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPW 157 (214)
T ss_dssp TCBCBTTTSCCCSSCCCCCCCG-GGCCBCCSEEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTT
T ss_pred cCcccccCcCcCCCCCcCCCCc-ccceEEecCEEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCC
Confidence 7899999999999999998653 2345667777777644 35899999999863 764
Q ss_pred CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 278 QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 278 ~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
.++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.++||++|
T Consensus 158 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n----~Cgi~~~~~~~~~~ 214 (214)
T 1m6d_A 158 LIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGS-G----ACGVNTMASSAVVD 214 (214)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSS-C----GGGTTTTCEEEECC
T ss_pred cCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCC-C----ccccCceeEEEEeC
Confidence 589999999999999999999999999999999999999984 3 49999999999986
No 25
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=100.00 E-value=1.3e-60 Score=427.20 Aligned_cols=190 Identities=48% Similarity=0.985 Sum_probs=172.0
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+|+||||||.||||||||+++++|++++++++..++||||+|+||+. .+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~yi~~~ 78 (212)
T 2cio_A 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYGCNGGYPWSALQLVAQY 78 (212)
T ss_dssp CCSCEETTTTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHT
T ss_pred CCCcccCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCC--CCCCCCCCCHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999999999986 37899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
|+++|++|||.+..+.|+........+++++|..++.. .+|++|++|||..+|++.+
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~~~ 157 (212)
T 2cio_A 79 -GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKV 157 (212)
T ss_dssp -CBCBTTTSCCCSSCCCCCTTTTCSCSBCCSEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCSCC
T ss_pred -CcCcccccCCcCCCCCcCCCCCCCceEEEeeEEEeCCccHHHHHHHHHhCCEEEEEeccCcchhhcCCceecCCCCCCC
Confidence 79999999999999999876423456788888887653 2699999999998898888
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+ +|||||||||++|||+|||||+|+.++. .|.|||++.++||+++
T Consensus 158 ~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~~~Cgi~~~~~~p~~~ 212 (212)
T 2cio_A 158 DHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212 (212)
T ss_dssp CEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCT-TCGGGTTSCCEEEECC
T ss_pred CEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCC-CCccCcccceeEEEeC
Confidence 99999999998 7999999999999999999999996322 4679999999999975
No 26
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=100.00 E-value=2.1e-60 Score=433.71 Aligned_cols=196 Identities=42% Similarity=0.857 Sum_probs=176.9
Q ss_pred CCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHH
Q 041120 140 LGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFIT 219 (340)
Q Consensus 140 ~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~ 219 (340)
.+||++||||++|+|+||||||.||||||||+++++|++++++++..++||||+|+||+.. +.||+||++..|++|+.
T Consensus 16 ~~lP~~~DwR~~~~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~--~~gC~GG~~~~a~~yi~ 93 (241)
T 2oul_A 16 NFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGCNGGLINNAFEDMI 93 (241)
T ss_dssp CCCSSCEEGGGTTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTT--SCTTBCBCHHHHHHHHH
T ss_pred ccCCCccccCcCCCCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCC--CCCCCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999875 78999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCC-cCCCCCCceeEEeceeEEcCCC-------------------cccccccCceecCCCCCCC
Q 041120 220 KIGGVTTEDDYPYRGKNDR-CQTDKTKHHAVTITGYEAIPAR-------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 220 ~~~Gi~~e~~yPy~~~~~~-c~~~~~~~~~~~i~~y~~~~~~-------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
+++|+++|++|||.+..+. |+... ....+++++|..++.. .+|++|++|||..+|+..+
T Consensus 94 ~~~Gi~~e~~yPY~~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~ik~~lGPV~v~i~~~~~f~~Y~~Giy~~~c~~~~ 172 (241)
T 2oul_A 94 ELGGICPDGDYPYVSDAPNLCNIDR-CTEKYGIKNYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGIFDGECGDQL 172 (241)
T ss_dssp HTTSBCBTTSSCCCTTSCCCCCTTS-SSCCBCCSEEEECCTTCHHHHHHHTCCEEEEECBCHHHHTCCSSBCCSCBCSSC
T ss_pred HhCCcCccccCCCcCCCCCcCCCCC-CccceeeeeEEEeCCCCHHHHHHhhCCEEEEEecCcchhhcCCcEEcCcCCCCC
Confidence 8558999999999998888 98753 3456778888777652 4799999999998887669
Q ss_pred CeEEEEEEEeecC----------CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDH----------GEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~----------g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+++ |++|||||||||++|||+|||||+|+.++. .|+|||++.++||++.
T Consensus 173 ~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~g~Cgi~~~~~~~~~~ 241 (241)
T 2oul_A 173 NHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGL-MRKCGLGTDAFIPLIE 241 (241)
T ss_dssp CEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSC-CCGGGTTSSEEEEECC
T ss_pred CEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCC-CCcCCccceEEEEeeC
Confidence 9999999999985 889999999999999999999999996554 5779999999999874
No 27
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=100.00 E-value=1.8e-60 Score=428.61 Aligned_cols=192 Identities=51% Similarity=1.018 Sum_probs=173.0
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+|+||||||.||||||||+++++|+++++++++.++||||+|+||+...++.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~~~ 80 (220)
T 2xu3_A 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 80 (220)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCCCCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999975457899999999999999754
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCC-CCC-
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEY-CGH- 277 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~-c~~- 277 (340)
.|+++|++|||.+..+.|+..+ ....+++++|..++.+ .+|++|++|||..+ |+.
T Consensus 81 ~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~~ 159 (220)
T 2xu3_A 81 GGLDSEESYPYEATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE 159 (220)
T ss_dssp TCEEBTTTSCCCSSCCCCCCCG-GGEEECCSEEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCSS
T ss_pred CCcccccccCCcccCcCccCCC-CCcceeeeeEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCCC
Confidence 5899999999999999998763 3456788888888643 36999999999886 874
Q ss_pred CCCeEEEEEEEe----ecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 278 QLNHGVTVVGYG----EDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 278 ~~~Hav~iVGyg----~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
.++|||+||||| +++|++|||||||||++|||+|||||+|+.+| .|||++.++||++
T Consensus 160 ~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n----~Cgi~~~~~~p~~ 220 (220)
T 2xu3_A 160 DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPTV 220 (220)
T ss_dssp CCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSS----GGGTTTSCEEEEC
T ss_pred CCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCC----cCCccccceeeeC
Confidence 789999999999 56789999999999999999999999998644 4999999999985
No 28
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=100.00 E-value=3.7e-60 Score=425.11 Aligned_cols=189 Identities=49% Similarity=0.874 Sum_probs=168.8
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||++++||++++++++..++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~Dwr~~g~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~y~~~~ 78 (215)
T 3i06_A 1 APAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT--DSGCSGGLMNNAFEWIVQE 78 (215)
T ss_dssp CCSEEEGGGGTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSS--SCGGGCCCHHHHHHHHHHH
T ss_pred CCCcccCCcCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCC--CCCCCCCCHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999875 7899999999999999985
Q ss_pred --CCCCCCCCCCCCCCCC---CcCCCCCCceeEEeceeEEcCCC--------------------cccccccCceecCCCC
Q 041120 222 --GGVTTEDDYPYRGKND---RCQTDKTKHHAVTITGYEAIPAR--------------------YAFQLYSHGVFDEYCG 276 (340)
Q Consensus 222 --~Gi~~e~~yPy~~~~~---~c~~~~~~~~~~~i~~y~~~~~~--------------------~~f~~y~~Gi~~~~c~ 276 (340)
+|+++|++|||....+ .|.... ....+++++|..++.+ .+|++|++|||.....
T Consensus 79 ~~gGi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~~~~ 157 (215)
T 3i06_A 79 NNGAVYTEDSYPYASGEGISPPCTTSG-HTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVS 157 (215)
T ss_dssp STTEEEC-CCSCCCCTTSCCCCCCCSS-CCEEEEEEEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECSCCC
T ss_pred ccccccccCccCCcCCCCCCCccccCC-cccceEecceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccCCCC
Confidence 5799999999997543 687653 3456788888888755 6899999999986334
Q ss_pred CCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 277 HQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 277 ~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
..++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.++||++
T Consensus 158 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~-n----~cgi~~~~~~~~~ 214 (215)
T 3i06_A 158 EQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGS-N----QCLVKEEASSAVV 214 (215)
T ss_dssp SCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSS-C----GGGTTSSEEEEEE
T ss_pred CccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCC-C----eecCCCceeEEec
Confidence 5689999999999999999999999999999999999999984 3 4999999999986
No 29
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=100.00 E-value=2.3e-60 Score=433.99 Aligned_cols=197 Identities=42% Similarity=0.812 Sum_probs=176.5
Q ss_pred CCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHH
Q 041120 139 YLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFI 218 (340)
Q Consensus 139 ~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i 218 (340)
..+||++||||++|+|+||||||.||||||||++++||++++++++..++||||+|+||+.. +.||+||++..|++|+
T Consensus 17 ~~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~--~~gC~GG~~~~a~~y~ 94 (243)
T 3bwk_A 17 AKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK--NNGCYGGYITNAFDDM 94 (243)
T ss_dssp CCCCCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTT--SCGGGCCCHHHHHHHH
T ss_pred cccCCCceecCcCCCCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCC--CCCCCCCCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999875 7899999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCC-cCCCCCCceeEEeceeEEcCCC-------------------cccccccCceecCCCCCC
Q 041120 219 TKIGGVTTEDDYPYRGKNDR-CQTDKTKHHAVTITGYEAIPAR-------------------YAFQLYSHGVFDEYCGHQ 278 (340)
Q Consensus 219 ~~~~Gi~~e~~yPy~~~~~~-c~~~~~~~~~~~i~~y~~~~~~-------------------~~f~~y~~Gi~~~~c~~~ 278 (340)
.+++|+++|++|||.+..+. |+... ....+++++|..++.. .+|+.|++|||...|+..
T Consensus 95 ~~~~Gi~~e~~yPY~~~~~~~C~~~~-~~~~~~i~~~~~v~~~~~~~ik~~lGPV~v~i~~~~~f~~Y~~Giy~~~c~~~ 173 (243)
T 3bwk_A 95 IDLGGLCSQDDYPYVSNLPETCNLKR-CNERYTIKSYVSIPDDKFKEALRYLGPISISIAASDDFAFYRGGFYDGECGAA 173 (243)
T ss_dssp HHTTSBCBTTTSCCCTTSCCCCCGGG-CSSCBCCCEEEECCTTCHHHHHHHTCCEEEEECCCHHHHTCCSSSCCCCCCSS
T ss_pred HHhCCcccccccCCcCCCCCcCCCCC-CccceeeeeEEEeCCCCHHHHHHhhCCEEEEEecChhHHhcCCceecCCCCCc
Confidence 98558999999999998888 98653 2345778888777642 479999999998888766
Q ss_pred CCeEEEEEEEeecC----------CeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 279 LNHGVTVVGYGEDH----------GEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 279 ~~Hav~iVGyg~~~----------g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
++|||+|||||+++ |++|||||||||++|||+|||||+|+.++. .|+|||++.++||+++
T Consensus 174 ~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~g~Cgi~~~~~~~~~~ 243 (243)
T 3bwk_A 174 PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGY-KKTCSIGTEAYVPLLE 243 (243)
T ss_dssp CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSC-CCSTTTTSSEEEEEC-
T ss_pred CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCC-CCcCCccceEEEEecC
Confidence 99999999999985 889999999999999999999999996554 5779999999999874
No 30
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=100.00 E-value=4.7e-60 Score=424.03 Aligned_cols=190 Identities=52% Similarity=1.057 Sum_probs=172.6
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|++++++++..++||||+|+||+.. +.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~~a~~y~~~~ 78 (214)
T 2bdz_A 1 YPESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR--SHGCDGGYQTTSLQYVVDN 78 (214)
T ss_dssp CCSCEETTTTTCCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTT--SCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCCCCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCC--CCCCCCCCHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999863 7899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
|+++|++|||.+..+.|.........+++++|..++.. .+|++|++|||..+|++.+
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~gPV~v~i~~~~~~f~~Y~~Giy~~~~~~~~ 157 (214)
T 2bdz_A 79 -GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNT 157 (214)
T ss_dssp -CEEBTTTSCCCSSCCCCCTTTCCSCEECCCEEEEECSSBHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCSCCSCC
T ss_pred -CCCccccCCCCCCCCCCCCCCCCCceeeecCEEEeCCCcHHHHHHHHHhCCEEEEEeeChhHhhcccCceecCCCCCCC
Confidence 89999999999999999876433456788888877653 3799999999999898889
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
+|||+|||||+ +|||||||||++|||+|||||+|+.++. .|.|||++.++||++.
T Consensus 158 ~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~~~Cgi~~~~~~p~~~ 212 (214)
T 2bdz_A 158 DHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRS-KGTCGVYTSSFFPIKG 212 (214)
T ss_dssp CEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBS-SCGGGTTSCEEEEECC
T ss_pred CeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCC-CCcccccccceEEEec
Confidence 99999999997 7999999999999999999999986332 3679999999999975
No 31
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=100.00 E-value=2.6e-60 Score=427.61 Aligned_cols=191 Identities=45% Similarity=0.959 Sum_probs=174.1
Q ss_pred CCCeeeccCCC-CCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHH
Q 041120 142 LPASVDWRKEG-AVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITK 220 (340)
Q Consensus 142 lP~~~Dwr~~g-~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~ 220 (340)
||++||||++| +||||||||.||||||||+++++|+++++++++.++||||+|+||+....+.||+||++..|++|+++
T Consensus 1 lP~~~DwR~~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~ 80 (220)
T 8pch_A 1 YPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRY 80 (220)
T ss_dssp CCSCEEHHHHSSCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHHH
T ss_pred CCCCEecCcCCCcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHHH
Confidence 79999999999 89999999999999999999999999999999999999999999997656789999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCC-CCC
Q 041120 221 IGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEY-CGH 277 (340)
Q Consensus 221 ~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~-c~~ 277 (340)
++|+++|++|||.+..+.|... ......++.+|..++.. .+|+.|++|||..+ |..
T Consensus 81 ~~Gi~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~ 159 (220)
T 8pch_A 81 NKGIMGEDTYPYKGQDDHCKFQ-PDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK 159 (220)
T ss_dssp HTCEEBTTTSCCCSSCCCCCCC-GGGEEECEEEEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCC
T ss_pred cCCcCcccccCccCCCCCCCCC-CCcceEEeCCEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCC
Confidence 8789999999999999999876 34456788888888643 47999999999876 753
Q ss_pred ---CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 278 ---QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 278 ---~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
.++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.++||+.
T Consensus 160 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~-n----~cgi~~~~~~~~p 218 (220)
T 8pch_A 160 TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGK-N----MCGLAACASYPIP 218 (220)
T ss_dssp STTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSS-C----GGGTTTSCEEEEE
T ss_pred CCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCC-C----ccccCCCceeEee
Confidence 589999999999999999999999999999999999999984 3 4999999999985
No 32
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=100.00 E-value=8.4e-60 Score=430.77 Aligned_cols=195 Identities=46% Similarity=0.941 Sum_probs=173.7
Q ss_pred CCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHH
Q 041120 141 GLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITK 220 (340)
Q Consensus 141 ~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~ 220 (340)
+||++||||++|+|+||||||.||||||||+++++|++++++++..++||+|+|+||+. .+.||+||++..|++|+++
T Consensus 1 ~lP~~~DwR~~g~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~--~~~gC~GG~~~~a~~y~~~ 78 (246)
T 2b1m_A 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD--ESEGCYNGWHYQSFEWVVK 78 (246)
T ss_dssp -CCSCEEGGGTTCCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSBTTTBCCHHHHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcC--CCCCCCCCCHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999986 3789999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCCcCCCCCCceeEEecee---EEcCCC------------------------cccccccCceecC
Q 041120 221 IGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGY---EAIPAR------------------------YAFQLYSHGVFDE 273 (340)
Q Consensus 221 ~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y---~~~~~~------------------------~~f~~y~~Gi~~~ 273 (340)
++|+++|++|||.+..+.|.... ....+++++| ..++.. .+|++|++|||..
T Consensus 79 ~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~ 157 (246)
T 2b1m_A 79 HGGIASEADYPYKARDGKCKANE-IQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDG 157 (246)
T ss_dssp TTCBCBTTTSCCCSSCCCCCGGG-CCCCBCCSEEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECC
T ss_pred hCCcCccccccccCCCCcCcCCC-CCCceeEcCcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecC
Confidence 87899999999999999998652 3345677777 666532 3799999999998
Q ss_pred -CCCCC--CCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 274 -YCGHQ--LNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 274 -~c~~~--~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
.|+.. ++|||+|||||+++|++|||||||||++|||+|||||+|+.++. .|.|||++.++||++.
T Consensus 158 ~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~-~n~CgI~~~~~~p~~~ 225 (246)
T 2b1m_A 158 GNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNL-LGVCGMNYFASYPIIE 225 (246)
T ss_dssp TTCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCT-TCGGGTTSEEEEEECC
T ss_pred CCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCC-CccccccceeeEEEec
Confidence 48864 89999999999999999999999999999999999999986332 4669999999999974
No 33
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=100.00 E-value=2.2e-60 Score=429.21 Aligned_cols=196 Identities=52% Similarity=1.045 Sum_probs=176.3
Q ss_pred CCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHH
Q 041120 140 LGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFIT 219 (340)
Q Consensus 140 ~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~ 219 (340)
.+||++||||++|+|+||||||.||||||||+++++|+++++++++.++||+|+|+||+...++.||+||++..|++|+.
T Consensus 5 ~~lP~~~Dwr~~~~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~~ 84 (224)
T 3f75_A 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYVL 84 (224)
T ss_dssp GGSCSCEEHHHHTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHHH
T ss_pred cCCCCceecccCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999765588999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCC
Q 041120 220 KIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGH 277 (340)
Q Consensus 220 ~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~ 277 (340)
+++||++|++|||.+..+.|.... ....+++.+|..++.. .+|++|++|||++.|+.
T Consensus 85 ~~~Gi~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~~~~~~~~~l~~~l~~gPV~v~i~~~~~~f~~y~~Giy~~~~~~ 163 (224)
T 3f75_A 85 DSGGICSEDAYPYLARDEECRAQS-CEKVVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGT 163 (224)
T ss_dssp HHTCBCBTTTSCCCSSCCCCCGGG-SCCCBCCSEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHTEEEEEECCCCCC
T ss_pred HhCCccccccCCCcCCCCCCCcCC-CCceEEeccEEEeCCChHHHHHHHHcCCCEEEEEeccchhhhcCccceECCCCCC
Confidence 855999999999999999998653 3345678888887643 37999999999977988
Q ss_pred CCCeEEEEEEEeec--CCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 278 QLNHGVTVVGYGED--HGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 278 ~~~Hav~iVGyg~~--~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
.++|||+|||||++ +|++|||||||||++|||+|||||+|+.+. .|.|||+++++||++
T Consensus 164 ~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~--~~~cgi~~~~~~p~~ 224 (224)
T 3f75_A 164 DLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGE--EGQCGLLLDASFPVM 224 (224)
T ss_dssp CCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCT--TCGGGTTSSCEEEEC
T ss_pred ccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCC--CCcCcccCceeeeeC
Confidence 89999999999998 899999999999999999999999999621 256999999999985
No 34
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=100.00 E-value=1e-59 Score=420.13 Aligned_cols=185 Identities=55% Similarity=1.104 Sum_probs=168.5
Q ss_pred CCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHh
Q 041120 142 LPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKI 221 (340)
Q Consensus 142 lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~ 221 (340)
||++||||++|+||||||||.||||||||+++++|+++++++++.++||||+|+||+. .+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~--~~~gC~GG~~~~a~~y~~~~ 78 (208)
T 1o0e_A 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHGCLGGAFVFAYQYIINN 78 (208)
T ss_dssp CCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCT--TSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcC--CCCCCCCCCHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999999999999999986 37899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC----------------------cccccccCceecCCCCCCC
Q 041120 222 GGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR----------------------YAFQLYSHGVFDEYCGHQL 279 (340)
Q Consensus 222 ~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~----------------------~~f~~y~~Gi~~~~c~~~~ 279 (340)
+|+++|++|||.+..+.|+. ....+++++|..++.. .+|++|++|||+.+|+..+
T Consensus 79 ~Gi~~e~~yPY~~~~~~C~~---~~~~~~i~~~~~v~~~~~~~i~~~l~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~~~ 155 (208)
T 1o0e_A 79 GGIDTQANYPYKAVQGPCQA---ASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKL 155 (208)
T ss_dssp TCBCBTTTSCCCSSCCCCCC---CCCCBCCCEEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCCCCSCC
T ss_pred CCcCcccccCccCCCCcCCC---CCceEEeCeEEEeCCCCHHHHHHHHHhCCEEEEEEccCcccccccCceECCCCCCcC
Confidence 78999999999999999986 2345678888877653 2699999999998898888
Q ss_pred CeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 280 NHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 280 ~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
+|||+|||||+ +|||||||||++|||+|||||+|+.+ .|.|||++.++||++
T Consensus 156 ~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~---~~~Cgi~~~~~~p~~ 207 (208)
T 1o0e_A 156 NHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGG---CGLCGIARLPYYPTK 207 (208)
T ss_dssp CEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCST---TCGGGTTSSCEEEEC
T ss_pred CEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCC---CCcCCCcccceeeec
Confidence 99999999997 79999999999999999999999852 135999999999986
No 35
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=100.00 E-value=2.5e-59 Score=421.70 Aligned_cols=188 Identities=35% Similarity=0.617 Sum_probs=169.6
Q ss_pred CCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHH
Q 041120 140 LGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFIT 219 (340)
Q Consensus 140 ~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~ 219 (340)
.+||++||||++|+||||||||.||||||||+++++|+++++++++.++||||+|+||+. +.||+||++..|++|++
T Consensus 8 ~~lP~~~DwR~~~~vtpVkdQg~cGsCWAfa~~~~lE~~~~~~~~~~~~lS~q~l~dc~~---~~gC~GG~~~~a~~~~~ 84 (222)
T 3f5v_A 8 GNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS---QHGCHGDTIPRGIEYIQ 84 (222)
T ss_dssp CCCCSCEEHHHHTCSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC---SSTTBCCCHHHHHHHHH
T ss_pred cCCCCCCCCccCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhCcC---CCCCCCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999987 78999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCCcCCCCCCceeEEeceeEEcCCC-------------------------cccccccCceecCC
Q 041120 220 KIGGVTTEDDYPYRGKNDRCQTDKTKHHAVTITGYEAIPAR-------------------------YAFQLYSHGVFDEY 274 (340)
Q Consensus 220 ~~~Gi~~e~~yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~-------------------------~~f~~y~~Gi~~~~ 274 (340)
++ |+++|++|||.+..+.|+. .....+++++|..++.. .+|++|++|||..+
T Consensus 85 ~~-Gi~~e~~yPY~~~~~~C~~--~~~~~~~i~~~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~~ 161 (222)
T 3f5v_A 85 HN-GVVQESYYRYVAREQSCRR--PNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQR 161 (222)
T ss_dssp HH-CEEBGGGSCCCSSCCCCCC--CSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCC
T ss_pred Hc-CCCchhhCCCcccCCCccC--CcCcceeeccEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceecC
Confidence 98 8999999999999999983 34456788888877433 25999999987543
Q ss_pred -C-CCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeee
Q 041120 275 -C-GHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 275 -c-~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~ 338 (340)
| ...++|||+|||||+++|++|||||||||++|||+|||||+|+. | .|||++.++||++
T Consensus 162 ~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~r~~-n----~cgi~~~~~~p~~ 222 (222)
T 3f5v_A 162 DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANI-D----LMMIEEYPYVVIL 222 (222)
T ss_dssp CCSSSCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSS-C----GGGTTTSCEEEEC
T ss_pred CCCCCccCcEEEEEEEeccCCCEEEEEEcCCCCCcccCCEEEEEcCC-C----eecCCCceeEEeC
Confidence 4 46789999999999999999999999999999999999999983 4 4999999999985
No 36
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=100.00 E-value=4e-55 Score=404.43 Aligned_cols=192 Identities=33% Similarity=0.707 Sum_probs=158.2
Q ss_pred CCCCCeeeccCC----CCCCccCCCCCCCchHHHHHHHHHHHHHHHHcC--CccccChhHhhhccCCCCCCCCCCCchHH
Q 041120 140 LGLPASVDWRKE----GAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTG--KLVSLSEQELVDCDVNSENQGCNGGYMEK 213 (340)
Q Consensus 140 ~~lP~~~Dwr~~----g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~ 213 (340)
.+||++||||++ |.|+||||||.||||||||++++||++++|+++ ..+.||||+|+||+..+.+.||+||++..
T Consensus 5 ~~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~ 84 (266)
T 3cbj_A 5 LKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE 84 (266)
T ss_dssp CCCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHH
T ss_pred CCCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHH
Confidence 479999999987 789999999999999999999999999999875 37899999999998632368999999999
Q ss_pred HHHHHHHhCCCCC-------CCCCCCC---------CCCCCcCCCC--------C-C--------ceeEEeceeEEcCCC
Q 041120 214 AFEFITKIGGVTT-------EDDYPYR---------GKNDRCQTDK--------T-K--------HHAVTITGYEAIPAR 260 (340)
Q Consensus 214 a~~~i~~~~Gi~~-------e~~yPy~---------~~~~~c~~~~--------~-~--------~~~~~i~~y~~~~~~ 260 (340)
|++|++++ |+++ |++|||. +..+.|.... . . ...+.+..| .++.+
T Consensus 85 a~~y~~~~-Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~-~v~~~ 162 (266)
T 3cbj_A 85 AWNFWTRK-GLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNS 162 (266)
T ss_dssp HHHHHHHT-CBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCE-ECCSC
T ss_pred HHHHHHHh-CcCcCccccccccccCcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeeeeeE-EeCCC
Confidence 99999997 8999 9999998 3445564210 0 0 001112222 33322
Q ss_pred ---------------------cccccccCceecCCCCC-CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeC
Q 041120 261 ---------------------YAFQLYSHGVFDEYCGH-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARN 318 (340)
Q Consensus 261 ---------------------~~f~~y~~Gi~~~~c~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~ 318 (340)
.+|+.|++|||..+|+. .++|||+|||||+++|++|||||||||++|||+|||||+|+
T Consensus 163 ~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg 242 (266)
T 3cbj_A 163 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG 242 (266)
T ss_dssp HHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECS
T ss_pred HHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecCCCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEEcC
Confidence 58999999999987665 35999999999999999999999999999999999999998
Q ss_pred CCCCCCcccceeecceeeee
Q 041120 319 SPSSNIGICGILMQASYPVK 338 (340)
Q Consensus 319 ~~~~~~~~Cgi~~~~~yp~~ 338 (340)
. | .|||++.+++|+.
T Consensus 243 ~-n----~cgI~~~~~~~~p 257 (266)
T 3cbj_A 243 Q-D----HCGIESEVVAGIP 257 (266)
T ss_dssp S-C----GGGTTTSCEECCB
T ss_pred C-C----cccccCceEEEEe
Confidence 4 3 4999999998864
No 37
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=100.00 E-value=6.1e-55 Score=405.09 Aligned_cols=197 Identities=27% Similarity=0.589 Sum_probs=165.8
Q ss_pred CCCCCCCeeeccCC---CCCCccCCCC---CCCchHHHHHHHHHHHHHHHHcC-C--ccccChhHhhhccCCCCCCCCCC
Q 041120 138 QYLGLPASVDWRKE---GAVTPVKDQG---QCGSCWAFSAVAAVEGINKLKTG-K--LVSLSEQELVDCDVNSENQGCNG 208 (340)
Q Consensus 138 ~~~~lP~~~Dwr~~---g~vtpV~nQg---~cGsCwAfA~~~~lE~~~~~~~~-~--~~~LS~q~l~dc~~~~~~~gC~G 208 (340)
+..+||++||||++ ++|+|||||| .||||||||++++||++++++++ . .++||||+|+||+. ..||+|
T Consensus 32 ~~~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~---~~gC~G 108 (277)
T 1deu_A 32 SPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGN---AGSCEG 108 (277)
T ss_dssp CGGGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSS---SEETBE
T ss_pred ccccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcC---CCCCCC
Confidence 34589999999998 6799999999 99999999999999999999875 4 47999999999986 379999
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCCCCCCCCcCC-CC-------------CCceeEEeceeEEcCCC--------------
Q 041120 209 GYMEKAFEFITKIGGVTTEDDYPYRGKNDRCQT-DK-------------TKHHAVTITGYEAIPAR-------------- 260 (340)
Q Consensus 209 G~~~~a~~~i~~~~Gi~~e~~yPy~~~~~~c~~-~~-------------~~~~~~~i~~y~~~~~~-------------- 260 (340)
|++..|++|+.++ ||++|++|||.+.++.|.. .. .....+++.+|..++..
T Consensus 109 G~~~~a~~yi~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV~ 187 (277)
T 1deu_A 109 GNDLSVWDYAHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPIS 187 (277)
T ss_dssp ECHHHHHHHHHHT-CBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEE
T ss_pred CCHHHHHHHHHHc-CCCcCccCCCcCCCCCccccccccccccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCEE
Confidence 9999999999987 8999999999998888873 10 01123556667665432
Q ss_pred ------cccccccCceecCC-CCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCCCC--C-CCccccee
Q 041120 261 ------YAFQLYSHGVFDEY-CGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNSPS--S-NIGICGIL 330 (340)
Q Consensus 261 ------~~f~~y~~Gi~~~~-c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~--~-~~~~Cgi~ 330 (340)
.+|+.|++|||..+ |...++|||+|||||+++|++|||||||||++|||+|||||+|+.+. . +...|||+
T Consensus 188 v~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe 267 (277)
T 1deu_A 188 CGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIE 267 (277)
T ss_dssp EEECCCHHHHTCCSSEECBCCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTT
T ss_pred EEEecccccccCcCcEECCCCCCCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceec
Confidence 47999999999987 44578999999999999999999999999999999999999999530 0 00159999
Q ss_pred ecceeeee
Q 041120 331 MQASYPVK 338 (340)
Q Consensus 331 ~~~~yp~~ 338 (340)
++++|++.
T Consensus 268 ~~~~~~~p 275 (277)
T 1deu_A 268 EHCTFGDP 275 (277)
T ss_dssp SCEEEEEE
T ss_pred cccEeecc
Confidence 99999874
No 38
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=100.00 E-value=1.3e-54 Score=398.50 Aligned_cols=191 Identities=31% Similarity=0.657 Sum_probs=155.9
Q ss_pred CCCCeeeccCC----CCCCccCCCCCCCchHHHHHHHHHHHHHHHHcC--CccccChhHhhhccCCCCCCCCCCCchHHH
Q 041120 141 GLPASVDWRKE----GAVTPVKDQGQCGSCWAFSAVAAVEGINKLKTG--KLVSLSEQELVDCDVNSENQGCNGGYMEKA 214 (340)
Q Consensus 141 ~lP~~~Dwr~~----g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~--~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a 214 (340)
+||++||||++ ++||||||||.||||||||++++||++++|+++ ..++||||+|+||+.. .+.||+||++..|
T Consensus 2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~-~~~GC~GG~~~~a 80 (254)
T 3qsd_A 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCES-CGLGCEGGILGPA 80 (254)
T ss_dssp CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTT-SBCTTBCBCHHHH
T ss_pred CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcC-CCCCCCCCCHHHH
Confidence 68999999998 689999999999999999999999999999976 6799999999999864 4689999999999
Q ss_pred HHHHHHhCCCCCCCCC-------CCC---------CCCCCcCCCC----------CC--c-ee----EEeceeEEcCCC-
Q 041120 215 FEFITKIGGVTTEDDY-------PYR---------GKNDRCQTDK----------TK--H-HA----VTITGYEAIPAR- 260 (340)
Q Consensus 215 ~~~i~~~~Gi~~e~~y-------Py~---------~~~~~c~~~~----------~~--~-~~----~~i~~y~~~~~~- 260 (340)
++|++++ ||++|++| ||. +..+.|.... .. . .. ........++.+
T Consensus 81 ~~yi~~~-Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (254)
T 3qsd_A 81 WDYWVKE-GIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDE 159 (254)
T ss_dssp HHHHHHT-CBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCH
T ss_pred HHHHHHc-CCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeeeeEecCCcH
Confidence 9999998 89999988 997 3444553210 00 0 00 000011123222
Q ss_pred --------------------cccccccCceecCCCCC-CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCceEEEEeCC
Q 041120 261 --------------------YAFQLYSHGVFDEYCGH-QLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGEAGYIRMARNS 319 (340)
Q Consensus 261 --------------------~~f~~y~~Gi~~~~c~~-~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~ 319 (340)
.+|++|++|||..+|.. .++|||+|||||+++|++|||||||||++|||+|||||+|+.
T Consensus 160 ~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~rg~ 239 (254)
T 3qsd_A 160 KAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGR 239 (254)
T ss_dssp HHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEEeccccccccCCeeccCCCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEcCC
Confidence 68999999999987654 469999999999999999999999999999999999999984
Q ss_pred CCCCCcccceeecceeeee
Q 041120 320 PSSNIGICGILMQASYPVK 338 (340)
Q Consensus 320 ~~~~~~~Cgi~~~~~yp~~ 338 (340)
| .|||++.+...+-
T Consensus 240 -n----~CgI~~~~~~~~p 253 (254)
T 3qsd_A 240 -D----ECSIESEVTAGRI 253 (254)
T ss_dssp -C----GGGTTSSEEEEEC
T ss_pred -C----eecCCCceEeecc
Confidence 3 4999999887653
No 39
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=100.00 E-value=1.5e-50 Score=373.74 Aligned_cols=190 Identities=26% Similarity=0.605 Sum_probs=147.9
Q ss_pred CeeeccCC-CCCC--ccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCCCCCCCCCCCch-HHHHHHHH
Q 041120 144 ASVDWRKE-GAVT--PVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVNSENQGCNGGYM-EKAFEFIT 219 (340)
Q Consensus 144 ~~~Dwr~~-g~vt--pV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~-~~a~~~i~ 219 (340)
.-.|||++ |+++ ||||||.||||||||++++||++++++++.+++||||+|+||+...++.||+||.. ..++.|++
T Consensus 9 ~~~dWR~~~~~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~ 88 (265)
T 2wbf_X 9 YCNRLKDENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIE 88 (265)
T ss_dssp CBCGGGCTTSTGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHH
T ss_pred HHHhhccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHH
Confidence 35899999 6877 99999999999999999999999999999999999999999997655889999964 45568888
Q ss_pred HhCCCCCCCCCCCCCC--CCCcCCCCC----------------CceeEEeceeEEcCC-----------C----------
Q 041120 220 KIGGVTTEDDYPYRGK--NDRCQTDKT----------------KHHAVTITGYEAIPA-----------R---------- 260 (340)
Q Consensus 220 ~~~Gi~~e~~yPy~~~--~~~c~~~~~----------------~~~~~~i~~y~~~~~-----------~---------- 260 (340)
++|||++|++|||.+. .+.|+.... ....+++.+|..++. .
T Consensus 89 ~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~G 168 (265)
T 2wbf_X 89 DYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKG 168 (265)
T ss_dssp HHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTCEECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHS
T ss_pred HcCCCCCccccCCcCCCCCCCCCCccccccccccccccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhcC
Confidence 8866999999999863 467875321 011234556654432 0
Q ss_pred --------ccccccc-Ccee-cCCCCC-CCCeEEEEEEEeec---CC--eeEEEEEcCCCCCCCCCceEEEEeCCCCCCC
Q 041120 261 --------YAFQLYS-HGVF-DEYCGH-QLNHGVTVVGYGED---HG--EKYWLVKNSWGTSWGEAGYIRMARNSPSSNI 324 (340)
Q Consensus 261 --------~~f~~y~-~Gi~-~~~c~~-~~~Hav~iVGyg~~---~g--~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~ 324 (340)
.+|+.|+ +|++ ...|+. .++|||+|||||++ +| ++|||||||||++|||+|||||+|+..|.
T Consensus 169 PV~v~i~~~~f~~y~~~g~~~~~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~-- 246 (265)
T 2wbf_X 169 SVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH-- 246 (265)
T ss_dssp CEEEEECGGGGCSGGGGSSSEECCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTT--
T ss_pred CEEEEEEcccccccccCCcEEcCCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCc--
Confidence 4576674 4433 234874 68999999999985 56 68999999999999999999999865454
Q ss_pred cccceee---cceeee
Q 041120 325 GICGILM---QASYPV 337 (340)
Q Consensus 325 ~~Cgi~~---~~~yp~ 337 (340)
|||+. .++||+
T Consensus 247 --Cgi~~~~~~~~~~~ 260 (265)
T 2wbf_X 247 --CHFNFIHSVVIFNV 260 (265)
T ss_dssp --CSSCSCCEEEEECE
T ss_pred --cCcceeEEEEeccc
Confidence 99554 555553
No 40
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=100.00 E-value=2e-47 Score=357.29 Aligned_cols=209 Identities=20% Similarity=0.291 Sum_probs=156.3
Q ss_pred eEEEcccCCCCCHHHHHHhhcCCCCCCCC-CC--CCCCC--CCCCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 041120 103 FKLTDNKFADLSNEEFISTYLGYNKPYNE-PR--WPSVQ--YLGLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEG 177 (340)
Q Consensus 103 ~~~g~N~FsDlt~eEf~~~~~g~~~~~~~-~~--~~~~~--~~~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~ 177 (340)
..-..|++.++..|.++.. +|..++... +. +.... ..+||++||||+++ ||||||.||||||||+++++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~-lG~~p~~~d~rd~~~~~~~~~~~~lP~s~DwR~~~---pVkdQG~CGSCWAFAa~~alE~ 89 (291)
T 3ois_A 14 LVPRGSHMQTVLKRRKKSG-YGYIPDIADIRDFSYTPEKSVIAALPPKVDLTPPF---QVYDQGRIGSCTANALAAAIQF 89 (291)
T ss_dssp ---------CCCCCCCCTT-CCEECCCCCTTCCBCCCCHHHHHTCCSEEECCCSS---CCCBCTTSSCHHHHHHHHHHHH
T ss_pred cccchhhHhHhhhcccccc-CCCCCCCCcccccccCCCccccccCCcceecccCC---CcccCCCCccHHHHHHHHHHHH
Confidence 3446788999998888764 455544332 11 11111 24799999999984 9999999999999999999999
Q ss_pred HHHHHcCCccccChhHhh--hccCC-CCC-CCCCCCchHHHHHHHHHhCCCCCCCCCCCCCCC---CCcCCCC-------
Q 041120 178 INKLKTGKLVSLSEQELV--DCDVN-SEN-QGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKN---DRCQTDK------- 243 (340)
Q Consensus 178 ~~~~~~~~~~~LS~q~l~--dc~~~-~~~-~gC~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~---~~c~~~~------- 243 (340)
++. +++..+.||+|+|+ +|... .++ .+|.||++..|++|++++ ||++|++|||.+.+ +.|....
T Consensus 90 ~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~ 167 (291)
T 3ois_A 90 ERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKL-GVCPEKEWPYGDTPADPRTEEFPPGAPASKK 167 (291)
T ss_dssp HHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHT-CCCBGGGSCCCCCCCCTTTCSCCTTCGGGSC
T ss_pred HHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHh-CCCCHhhCCCCCCccccccccccccccccCC
Confidence 875 56778899999999 68642 123 468899999999999998 89999999999874 4565410
Q ss_pred C------CceeEEeceeEEcCCC---------------------cccccccC--ceecCC-CCC--CCCeEEEEEEEeec
Q 041120 244 T------KHHAVTITGYEAIPAR---------------------YAFQLYSH--GVFDEY-CGH--QLNHGVTVVGYGED 291 (340)
Q Consensus 244 ~------~~~~~~i~~y~~~~~~---------------------~~f~~y~~--Gi~~~~-c~~--~~~Hav~iVGyg~~ 291 (340)
+ ....+++++|..++.+ .+|+.|++ |||..+ |.. .++|||+|||||+
T Consensus 168 p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~~- 246 (291)
T 3ois_A 168 PSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYDD- 246 (291)
T ss_dssp CCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEET-
T ss_pred CCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEeC-
Confidence 0 1134678888888754 57999998 999877 543 2599999999984
Q ss_pred CCeeEEEEEcCCCCCCCCCceEEEEeCC
Q 041120 292 HGEKYWLVKNSWGTSWGEAGYIRMARNS 319 (340)
Q Consensus 292 ~g~~ywivkNSWG~~WGe~Gy~~i~~~~ 319 (340)
+++|||||||||++|||+|||||+|+.
T Consensus 247 -~~~ywivkNSWG~~WG~~Gy~~i~~~~ 273 (291)
T 3ois_A 247 -EIRHFRIRNSWGNNVGEDGYFWMPYEY 273 (291)
T ss_dssp -TTTEEEEECSBCTTSTBTTEEEEEHHH
T ss_pred -CCCEEEEEeCCCCCCCCCcEEEEEHHH
Confidence 678999999999999999999999983
No 41
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=100.00 E-value=3.3e-39 Score=314.04 Aligned_cols=189 Identities=19% Similarity=0.276 Sum_probs=147.7
Q ss_pred CCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHH-cCCccccCh----------------hHhhhccCC---
Q 041120 141 GLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLK-TGKLVSLSE----------------QELVDCDVN--- 200 (340)
Q Consensus 141 ~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~-~~~~~~LS~----------------q~l~dc~~~--- 200 (340)
..|..|+++....+|||+|||+||+|||||+++++|+.++++ +++.++||+ |+|+||+..
T Consensus 47 ~~~~~F~~~~~~~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~ 126 (453)
T 2cb5_A 47 RAQHVFQHAVPQEGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEP 126 (453)
T ss_dssp HCCCCCSEECSCCCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCceeeeeccCCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCC
Confidence 346778888888899999999999999999999999999998 578899999 999999854
Q ss_pred ---------CCCCCCCCCchHHHHHHHHHhCCCCCCCCCCCCCCC---------------------------C------C
Q 041120 201 ---------SENQGCNGGYMEKAFEFITKIGGVTTEDDYPYRGKN---------------------------D------R 238 (340)
Q Consensus 201 ---------~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPy~~~~---------------------------~------~ 238 (340)
..+.||+||.+..|+.++.++ |++++++|||+... + .
T Consensus 127 ~d~R~v~~l~~~~gcdGG~~~~a~~~i~ky-Gl~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~ 205 (453)
T 2cb5_A 127 EDGRLVQFLLMNPANDGGQWDMLVNIVEKY-GVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEIS 205 (453)
T ss_dssp TTSHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cchhhHHHhcCCCCCCCCChHHHHHHHHHc-CccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 247899999999999999887 89999999998741 2 1
Q ss_pred ----------------c----------CCCCC----------Cc-------eeE--EeceeEEc----------------
Q 041120 239 ----------------C----------QTDKT----------KH-------HAV--TITGYEAI---------------- 257 (340)
Q Consensus 239 ----------------c----------~~~~~----------~~-------~~~--~i~~y~~~---------------- 257 (340)
| ..... .+ ... .+.+|..+
T Consensus 206 ~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~v 285 (453)
T 2cb5_A 206 ATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTV 285 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeEE
Confidence 4 11000 00 011 33444432
Q ss_pred -----------------CCC----------------------cccccccCceecCC-C----------------------
Q 041120 258 -----------------PAR----------------------YAFQLYSHGVFDEY-C---------------------- 275 (340)
Q Consensus 258 -----------------~~~----------------------~~f~~y~~Gi~~~~-c---------------------- 275 (340)
|.. ..+.++++|||+.+ |
T Consensus 286 ~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~~~~~~~~~~fg~~~~~m~KaeRl~~~ 365 (453)
T 2cb5_A 286 EYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFG 365 (453)
T ss_dssp TTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTT
T ss_pred eecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeChhhccCCcEEcCccccchhhcCccccccCHHHHhhcc
Confidence 111 34566799999876 4
Q ss_pred CCCCCeEEEEEEEe--ec-CCe-eEEEEEcCCCCCCCCCceEEEEeCCCCCCCcccceeecceeeeec
Q 041120 276 GHQLNHGVTVVGYG--ED-HGE-KYWLVKNSWGTSWGEAGYIRMARNSPSSNIGICGILMQASYPVKR 339 (340)
Q Consensus 276 ~~~~~Hav~iVGyg--~~-~g~-~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~~~Cgi~~~~~yp~~~ 339 (340)
.+..+|||+||||| .+ +|+ +|||||||||++||++|||+|+++ .+...++.++++
T Consensus 366 ~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~---------wf~ey~~~vvV~ 424 (453)
T 2cb5_A 366 ESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE---------WFSEYVYEVVVD 424 (453)
T ss_dssp SCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH---------HHHHHEEEEEEE
T ss_pred CCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh---------hHhhceEEEEec
Confidence 23579999999999 65 787 999999999999999999999985 477777777765
No 42
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=100.00 E-value=1.2e-38 Score=310.35 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCCeeeccCCCCCCccCCCCCCCchHHHHHHHHHHHHHHHH-cCCccccCh----------------hHhhhccCCC--
Q 041120 141 GLPASVDWRKEGAVTPVKDQGQCGSCWAFSAVAAVEGINKLK-TGKLVSLSE----------------QELVDCDVNS-- 201 (340)
Q Consensus 141 ~lP~~~Dwr~~g~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~-~~~~~~LS~----------------q~l~dc~~~~-- 201 (340)
..|..|+++..+.+|||||||+||+|||||+++++|+.++++ +++.++||+ |+|+||+...
T Consensus 52 ~~~~~F~~~~~~~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~~ 131 (457)
T 2e01_A 52 QDNRVFNTVVSTDSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDID 131 (457)
T ss_dssp HCCCCCSEECC------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCTT
T ss_pred CCCCceEEEecCCccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCccc
Confidence 346678888888899999999999999999999999999998 888999999 7889997531
Q ss_pred --------CCCCCCCCchHHHHHHHHHhCCCCCCCCCCC
Q 041120 202 --------ENQGCNGGYMEKAFEFITKIGGVTTEDDYPY 232 (340)
Q Consensus 202 --------~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPy 232 (340)
.+.||+||.+..|+.++.++ ||++|++|||
T Consensus 132 ~r~v~~l~~~~gcdGG~~~~a~~~i~ky-Givpe~~yP~ 169 (457)
T 2e01_A 132 SRLVQYLLAAPTEDGGQYSMFLNLVKKY-GLIPKDLYGD 169 (457)
T ss_dssp SHHHHHHHHCTTCSCBCHHHHHHHHHHH-CCCBGGGSCS
T ss_pred chhhhhhccCCCCCCCCHHHHHHHHHHc-CccchhhcCC
Confidence 37899999999999999887 8999999999
No 43
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=100.00 E-value=3.9e-35 Score=279.95 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCCccCCCCCCCchHHHHHHHHHHHHHHHHcCCccccChhHhhhccCC----------CCCCCCCCCchHHHHHHHHHhC
Q 041120 153 AVTPVKDQGQCGSCWAFSAVAAVEGINKLKTGKLVSLSEQELVDCDVN----------SENQGCNGGYMEKAFEFITKIG 222 (340)
Q Consensus 153 ~vtpV~nQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~----------~~~~gC~GG~~~~a~~~i~~~~ 222 (340)
.+|||||||+||||||||+++++|+.++++++..++||+|+|+||+.. ..+.||+||.+..|++|++++
T Consensus 21 ~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~- 99 (383)
T 3pw3_A 21 PITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETF- 99 (383)
T ss_dssp CCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHT-
T ss_pred CCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHc-
Confidence 389999999999999999999999999999999999999999999852 125799999999999999998
Q ss_pred CCCCCCCCC
Q 041120 223 GVTTEDDYP 231 (340)
Q Consensus 223 Gi~~e~~yP 231 (340)
||++|++||
T Consensus 100 Givpe~~YP 108 (383)
T 3pw3_A 100 GLVPEEEMR 108 (383)
T ss_dssp CCCBGGGSC
T ss_pred CcCcHHhCC
Confidence 899999999
No 44
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=99.80 E-value=1.7e-19 Score=142.10 Aligned_cols=75 Identities=36% Similarity=0.707 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccCCCceEEEcccCCCCCHHHHHHhhcCCCCC
Q 041120 54 DPQSMEERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQNLSFKLTDNKFADLSNEEFISTYLGYNKP 128 (340)
Q Consensus 54 ~~~~~~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~s~~~g~N~FsDlt~eEf~~~~~g~~~~ 128 (340)
++.++...|++|+++|+|.|.+.+|+..|+.||++|+++|++||+++.+|++|+|+|+|||.+||++.++|.+.+
T Consensus 17 ~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~sy~lglN~FaDLT~eEF~~~~lg~~~~ 91 (106)
T 3f75_P 17 KEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFKKS 91 (106)
T ss_dssp CHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSCCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred CcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence 467889999999999999999888999999999999999999999888999999999999999999999887653
No 45
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=99.72 E-value=5e-18 Score=127.70 Aligned_cols=67 Identities=27% Similarity=0.521 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHhccC---C-CceEEEcccCCCCCHHHHHHhhcCCCC
Q 041120 59 EERFENWLKQYSREYGSEDEWQRRFGIYSSNVQYIDYINSQ---N-LSFKLTDNKFADLSNEEFISTYLGYNK 127 (340)
Q Consensus 59 ~~~f~~w~~~~~k~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~---~-~s~~~g~N~FsDlt~eEf~~~~~g~~~ 127 (340)
...|++|+.+|+|.|.+.+|+..| .||++|++.|++||++ + .+|++|+|+|+|||.+|| +.++|.+.
T Consensus 7 ~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf-~~~~g~~~ 77 (80)
T 2l95_A 7 DEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF-AQRSGKKV 77 (80)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHH-HHHHTSCC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHH-HHHhCCCC
Confidence 357999999999999877899999 9999999999999985 3 689999999999999999 88888654
No 46
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=96.15 E-value=0.013 Score=49.14 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=77.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH--------HHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHhCCCCCCCC
Q 041120 158 KDQGQCGSCWAFSAVAAVEGINK--------LKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDD 229 (340)
Q Consensus 158 ~nQg~cGsCwAfA~~~~lE~~~~--------~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~ 229 (340)
..||.-+=|-+|+.++.|-+... +.+-..+.+|+++|.++. ..+...++|.+.. |..+.
T Consensus 25 ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~t~----------~~~~q~Iky~~s~-G~~~~-- 91 (183)
T 1pxv_A 25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQ-GRDIH-- 91 (183)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGCC----------BCHHHHHHHHHHT-TCCCE--
T ss_pred eccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhcC----------CCHHHHHHHHHHc-CcChh--
Confidence 46999999999999999876542 111223678888888843 4688999999876 43310
Q ss_pred CCCCCCCCCcCCCCCCceeEEeceeEEcCCCcccccccCceecCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCC
Q 041120 230 YPYRGKNDRCQTDKTKHHAVTITGYEAIPARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGE 309 (340)
Q Consensus 230 yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~~~f~~y~~Gi~~~~c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe 309 (340)
+ ... .-... . ++. .+..+.....-..+++........+||++||||-.-++.++.+|=|=|-.
T Consensus 92 ~--~nr--~ls~n-----e--V~~--~i~~Nk~I~v~~~~v~e~~~~~~~gHA~av~Gya~~~~~~~y~~WNPW~~---- 154 (183)
T 1pxv_A 92 Y--QEG--VPSYN-----Q--VDQ--LTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDT---- 154 (183)
T ss_dssp E--EES--CCCHH-----H--HHH--HHHTTCCEEEEEECCCSSTTSCCCEEEEEEEEEEEETTEEEEEEECTTCS----
T ss_pred H--hcC--CCCHH-----H--HHH--HHhcCCcEEEEccccccCCCCccCceeEEEEeeeecCCCeEEEEeCCccC----
Confidence 0 000 00000 0 000 00001111111223332222235789999999998889999999888754
Q ss_pred CceEEEEeC
Q 041120 310 AGYIRMARN 318 (340)
Q Consensus 310 ~Gy~~i~~~ 318 (340)
|++-++.+
T Consensus 155 -~~~~~~a~ 162 (183)
T 1pxv_A 155 -ELSIQDAD 162 (183)
T ss_dssp -SCEEEETT
T ss_pred -CcEeecCC
Confidence 67777654
No 47
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=95.33 E-value=0.09 Score=48.71 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH--------HHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHhCCCCCCCC
Q 041120 158 KDQGQCGSCWAFSAVAAVEGINK--------LKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDD 229 (340)
Q Consensus 158 ~nQg~cGsCwAfA~~~~lE~~~~--------~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~ 229 (340)
..||.-+=|-+|+.+++|-+... +.+.....+|+++|.++. ..+...++|++.. |....-.
T Consensus 201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~ts----------~~~~q~Iky~qsy-G~~~~~~ 269 (367)
T 1x9y_A 201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCA----------TFPNQMIEYGKSQ-GRDIHYQ 269 (367)
T ss_dssp CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGGCC----------CCHHHHHHHHHHT-TEEEEEE
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhcC----------CCHHHHHHHHHHh-Ccchhhh
Confidence 46999999999999999875431 111223678888888843 4688999999966 5431100
Q ss_pred CCCCCCCCCcCCCCCCceeEEeceeEEcCCCcccccccCceecCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCC
Q 041120 230 YPYRGKNDRCQTDKTKHHAVTITGYEAIPARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSWGE 309 (340)
Q Consensus 230 yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~~~f~~y~~Gi~~~~c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WGe 309 (340)
.+.-... . ++ ..+..+.........+....-+...+|||+||||-..++.+|.++=|=|-.
T Consensus 270 ------n~~ls~d-----e--Vk--~~id~Nk~I~v~~~~v~~~~n~~~~gHAlavvGyA~~~~~~~y~~WNPW~~---- 330 (367)
T 1x9y_A 270 ------EGVPSYN-----Q--VD--QLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDT---- 330 (367)
T ss_dssp ------ESCCCHH-----H--HH--HHHHTTCCEEEEEEETTSCSSSCCCSEEEEEEEEEEETTEEEEEEECTTCS----
T ss_pred ------cCCCCHH-----H--HH--HHHhcCCcEEEEccccccCCCCccCceeEEEEeccccCCCcEEEEecCccC----
Confidence 0000000 0 00 000000111111111111112235789999999987788899999887753
Q ss_pred CceEEEEeC
Q 041120 310 AGYIRMARN 318 (340)
Q Consensus 310 ~Gy~~i~~~ 318 (340)
+++-++..
T Consensus 331 -~~~~~sa~ 338 (367)
T 1x9y_A 331 -ELSIQDAD 338 (367)
T ss_dssp -SCEEEETT
T ss_pred -CceeecCC
Confidence 36666543
No 48
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=95.09 E-value=0.043 Score=45.92 Aligned_cols=121 Identities=15% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH--------HHcCCccccChhHhhhccCCCCCCCCCCCchHHHHHHHHHhCCCCCCCC
Q 041120 158 KDQGQCGSCWAFSAVAAVEGINK--------LKTGKLVSLSEQELVDCDVNSENQGCNGGYMEKAFEFITKIGGVTTEDD 229 (340)
Q Consensus 158 ~nQg~cGsCwAfA~~~~lE~~~~--------~~~~~~~~LS~q~l~dc~~~~~~~gC~GG~~~~a~~~i~~~~Gi~~e~~ 229 (340)
..||.-+=|-+|+.++.|-+... +.+.....+|+++|..+.. .+...++|.++.|+ .. +
T Consensus 16 ETQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~~~----------t~~e~iky~~s~g~-~~--~ 82 (174)
T 1cv8_A 16 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGL----------TPREMIYFGQTQGR-SP--Q 82 (174)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHCCC----------CHHHHHHHHHHTTC-CC--E
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHcCC-Ch--h
Confidence 46999999999999999876542 1112236899999995543 57799999988842 11 0
Q ss_pred CCCCCCCCCcCCCCCCceeEEeceeEEcCCCcccccccCceecCCCCCCCCeEEEEEEEeec-CCeeEEEEEcCCCC
Q 041120 230 YPYRGKNDRCQTDKTKHHAVTITGYEAIPARYAFQLYSHGVFDEYCGHQLNHGVTVVGYGED-HGEKYWLVKNSWGT 305 (340)
Q Consensus 230 yPy~~~~~~c~~~~~~~~~~~i~~y~~~~~~~~f~~y~~Gi~~~~c~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~ 305 (340)
+ .. +.-... . ++. .+..+.......+.| ..+-+...+||++||||-.- +|.+|.++=|=|-.
T Consensus 83 ~--~n--~~ls~~-----e--V~~--~~~~nk~i~i~~~~v-e~~~~~~~gHAlav~Gy~~~~ng~~~y~~WNPW~~ 145 (174)
T 1cv8_A 83 L--LN--RMTTYN-----E--VDN--LTKNNKGIAILGSRV-ESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDN 145 (174)
T ss_dssp E--ES--SCCCHH-----H--HHH--HHHTTCCEEEEEEES-SCBTTBCCEEEEEEEEEEEETTSCEEEEEECTTCS
T ss_pred h--hc--CCCCHH-----H--HHH--HHhcCCceEEEcccc-cCCCCCCCceeEEEEeeeeecCCceEEEEeCCccC
Confidence 0 00 000000 0 000 000001111111112 11112356899999999985 78899999888753
No 49
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=23.10 E-value=37 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=19.9
Q ss_pred CCccCCCCCCCchHHHHHHHHHHHHHHHH
Q 041120 154 VTPVKDQGQCGSCWAFSAVAAVEGINKLK 182 (340)
Q Consensus 154 vtpV~nQg~cGsCwAfA~~~~lE~~~~~~ 182 (340)
+--|+=||.|++| ......+|..++-+
T Consensus 37 ~V~v~l~GaC~gc--~Tlk~gIe~~L~~~ 63 (74)
T 1th5_A 37 IVKVRLTGPAAVV--RTVRIAVSKKLREK 63 (74)
T ss_dssp EEEECCCSSSSSS--SSHHHHHHHHHHHH
T ss_pred EEEEEEecCCcch--HHHHHHHHHHHHHH
Confidence 4468899999999 34556888777644
No 50
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=20.67 E-value=1.1e+02 Score=28.11 Aligned_cols=37 Identities=24% Similarity=0.506 Sum_probs=0.0
Q ss_pred CeEEEEEEEeec----CCeeEEEEEcCCC-CCCC-------------------------CCceEEEE
Q 041120 280 NHGVTVVGYGED----HGEKYWLVKNSWG-TSWG-------------------------EAGYIRMA 316 (340)
Q Consensus 280 ~Hav~iVGyg~~----~g~~ywivkNSWG-~~WG-------------------------e~Gy~~i~ 316 (340)
+||=.|++.... .+...-.+||-|| ..|- ++|-|||+
T Consensus 246 ~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~dG~FWMs 312 (339)
T 2r9f_A 246 GHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMS 312 (339)
T ss_dssp TCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCCCSSEEEEE
T ss_pred CceEEEeEEEEEecCCCceEEEEEeCCCCCccccCCCCcCCccccccCHHHHHHhCCCCCCCEEEEE
No 51
>2z79_A Endo-1,4-beta-xylanase A; glycoside hydrolase, glycosidase, xylan degradatio hydrolase; 1.30A {Bacillus subtilis} PDB: 2qz3_A 2dcy_A* 1xxn_A* 1bcx_A* 1xnb_A 1bvv_A 2b42_B 3hd8_B 1hv0_A 2bvv_A 1c5h_A 1c5i_A 1hv1_A 1xnc_A 2dcz_A 3exu_A* 2b46_X* 2b45_X*
Probab=20.35 E-value=72 Score=26.68 Aligned_cols=37 Identities=32% Similarity=0.573 Sum_probs=27.9
Q ss_pred ccCceecCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCC
Q 041120 266 YSHGVFDEYCGHQLNHGVTVVGYGEDHGEKYWLVKNSWGTSW 307 (340)
Q Consensus 266 y~~Gi~~~~c~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~W 307 (340)
|.+|-|.+ .++--+.|-||-.++-.+|.||. +||+..
T Consensus 53 Ynsg~~~p----sGn~yl~vYGWt~nPlvEYYIve-~~g~~~ 89 (185)
T 2z79_A 53 YNAGVWAP----NGNGYLTLYGWTRSPLIEYYVVD-SWGTYR 89 (185)
T ss_dssp EEEEEEEE----ESSEEEEEEEEEETTTEEEEEEE-EESSCC
T ss_pred eeeeEEec----CCCEEEEEEecCCCCcEEEEEEe-eecccC
Confidence 43556653 35677899999998889999998 788643
No 52
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=20.02 E-value=1.1e+02 Score=28.10 Aligned_cols=37 Identities=30% Similarity=0.633 Sum_probs=0.0
Q ss_pred CeEEEEEEEeec----CCeeEEEEEcCCCC-----CCC----------------------CCceEEEE
Q 041120 280 NHGVTVVGYGED----HGEKYWLVKNSWGT-----SWG----------------------EAGYIRMA 316 (340)
Q Consensus 280 ~Hav~iVGyg~~----~g~~ywivkNSWG~-----~WG----------------------e~Gy~~i~ 316 (340)
+||=.|++.... .+...-.+||-||. .|. ++|-|||+
T Consensus 245 ~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~~dG~FWMs 312 (339)
T 1ziv_A 245 GHAYSVTGIDQVSFRGQRIELIRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMA 312 (339)
T ss_dssp TCCEEEEEEEEEEETTEEEEEEEEECCSSCCCCCSTTSTTCHHHHHSCHHHHHHTTCCCCSSSEEEEE
T ss_pred CeeEEEeEEEEEecCCCceEEEEecCCCCCCccCCCCCcCChhccccCHHHHHHhhCCCCCCCEEEEE
Done!