Query 041121
Match_columns 574
No_of_seqs 337 out of 2982
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.8E-53 1.5E-57 477.4 33.9 505 4-540 85-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-49 6.4E-54 447.8 33.7 498 11-540 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.2E-43 1.3E-47 337.9 6.3 410 41-561 55-493 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.9E-42 1.7E-46 330.3 3.7 357 42-485 82-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5.4E-40 1.2E-44 304.4 -14.5 470 12-536 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 8.9E-38 1.9E-42 289.7 -9.7 430 3-513 59-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.6E-35 7.8E-40 299.0 -1.9 436 7-536 40-489 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 1.5E-33 3.3E-38 275.0 -3.6 364 9-513 4-375 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 8.1E-32 1.8E-36 263.0 -3.4 366 3-508 23-394 (1255)
10 KOG0618 Serine/threonine phosp 100.0 6.6E-32 1.4E-36 275.3 -6.8 441 4-534 13-463 (1081)
11 KOG4237 Extracellular matrix p 99.9 7.4E-29 1.6E-33 230.3 -1.9 421 42-510 50-498 (498)
12 KOG4237 Extracellular matrix p 99.9 1.9E-27 4.1E-32 221.0 1.4 325 209-567 49-404 (498)
13 PLN03210 Resistant to P. syrin 99.9 2.5E-22 5.4E-27 228.4 27.4 331 33-486 553-903 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 3.5E-22 7.5E-27 211.0 18.0 268 12-377 201-468 (788)
15 PLN03210 Resistant to P. syrin 99.9 6.6E-21 1.4E-25 216.8 25.7 309 5-387 551-878 (1153)
16 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.7E-26 206.9 14.1 252 3-298 215-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.8E-19 6E-24 190.5 12.9 55 228-288 305-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.9E-18 4E-23 184.2 13.6 227 13-294 179-406 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.1E-23 172.1 -1.1 108 428-535 193-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-17 2.9E-22 165.2 3.2 165 6-186 17-206 (319)
21 KOG0617 Ras suppressor protein 99.7 1.3E-18 2.9E-23 144.0 -4.4 155 249-489 31-186 (264)
22 KOG0617 Ras suppressor protein 99.6 4.1E-17 8.8E-22 135.3 -5.5 131 10-186 31-163 (264)
23 PLN03150 hypothetical protein; 99.3 2.6E-12 5.6E-17 137.0 9.3 118 429-546 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 2.3E-13 5E-18 133.5 -2.9 192 232-513 55-247 (722)
25 KOG1909 Ran GTPase-activating 99.2 5.3E-13 1.1E-17 123.8 -2.2 251 6-288 24-311 (382)
26 PF14580 LRR_9: Leucine-rich r 99.2 5.7E-12 1.2E-16 109.9 3.1 127 34-182 15-149 (175)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.9E-11 4.1E-16 106.6 5.8 124 9-156 16-147 (175)
28 KOG3207 Beta-tubulin folding c 99.1 4.4E-12 9.5E-17 121.0 -1.0 207 35-289 118-340 (505)
29 KOG0532 Leucine-rich repeat (L 99.1 2E-12 4.3E-17 127.1 -4.7 175 273-537 73-248 (722)
30 KOG1909 Ran GTPase-activating 99.1 6.1E-12 1.3E-16 116.8 -1.3 222 2-264 48-311 (382)
31 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.5E-16 111.4 1.1 88 427-518 328-416 (490)
32 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 111.0 0.8 205 6-244 176-416 (490)
33 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.4E-15 118.0 7.1 80 430-513 211-290 (394)
34 COG4886 Leucine-rich repeat (L 99.1 2.6E-10 5.7E-15 116.3 8.2 165 16-188 97-270 (394)
35 KOG3207 Beta-tubulin folding c 99.1 2.4E-11 5.1E-16 116.1 0.2 214 5-241 114-340 (505)
36 PF13855 LRR_8: Leucine rich r 99.0 1.9E-10 4E-15 82.5 3.1 61 452-512 1-61 (61)
37 PLN03150 hypothetical protein; 99.0 8.5E-10 1.8E-14 117.8 8.6 93 426-518 440-533 (623)
38 PF13855 LRR_8: Leucine rich r 98.9 3.3E-10 7.2E-15 81.2 2.0 61 428-488 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 2.3E-10 4.9E-15 116.9 -0.9 237 11-289 71-319 (414)
40 KOG0531 Protein phosphatase 1, 98.9 2.9E-10 6.4E-15 116.1 -1.0 125 128-288 74-199 (414)
41 KOG1859 Leucine-rich repeat pr 98.6 1.6E-09 3.5E-14 109.8 -6.0 62 121-186 205-267 (1096)
42 KOG1859 Leucine-rich repeat pr 98.5 4.2E-09 9.2E-14 106.9 -4.5 112 422-538 181-294 (1096)
43 COG5238 RNA1 Ran GTPase-activa 98.4 3E-08 6.5E-13 89.3 -0.8 248 7-288 25-316 (388)
44 KOG4658 Apoptotic ATPase [Sign 98.4 4E-07 8.7E-12 99.8 7.4 250 38-301 523-796 (889)
45 KOG4658 Apoptotic ATPase [Sign 98.4 2.8E-07 6.1E-12 101.0 4.4 128 206-365 523-653 (889)
46 KOG4579 Leucine-rich repeat (L 98.3 3.1E-08 6.8E-13 79.8 -3.2 108 430-541 55-164 (177)
47 KOG2982 Uncharacterized conser 98.2 8.9E-07 1.9E-11 81.1 3.9 197 40-264 47-262 (418)
48 KOG2120 SCF ubiquitin ligase, 98.1 5E-08 1.1E-12 89.1 -6.0 35 58-92 210-244 (419)
49 KOG1644 U2-associated snRNP A' 98.1 4.5E-06 9.7E-11 72.4 5.5 120 41-182 22-149 (233)
50 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.3E-11 55.1 3.4 39 12-53 1-39 (44)
51 KOG1644 U2-associated snRNP A' 98.1 5.3E-06 1.2E-10 71.9 5.5 126 13-161 20-152 (233)
52 KOG2120 SCF ubiquitin ligase, 98.1 5.2E-08 1.1E-12 89.0 -7.0 154 127-287 186-350 (419)
53 KOG2982 Uncharacterized conser 98.1 1.4E-06 2.9E-11 79.9 1.4 85 10-94 69-158 (418)
54 COG5238 RNA1 Ran GTPase-activa 98.0 1.9E-06 4.1E-11 77.9 1.9 191 33-242 87-318 (388)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 53.9 3.7 40 149-189 1-40 (44)
56 KOG4579 Leucine-rich repeat (L 98.0 2.6E-07 5.7E-12 74.6 -3.4 120 59-200 28-150 (177)
57 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 77.2 8.9 138 34-183 48-187 (426)
58 PF13306 LRR_5: Leucine rich r 97.7 0.00017 3.7E-09 60.5 8.0 64 116-182 3-67 (129)
59 PF13306 LRR_5: Leucine rich r 97.5 0.00049 1.1E-08 57.7 7.6 121 145-301 8-128 (129)
60 PRK15386 type III secretion pr 97.4 0.00082 1.8E-08 66.6 9.8 137 124-286 51-188 (426)
61 KOG3665 ZYG-1-like serine/thre 97.4 0.0001 2.2E-09 79.1 3.3 17 79-95 170-186 (699)
62 KOG2739 Leucine-rich acidic nu 97.2 0.0001 2.3E-09 66.9 1.1 56 125-181 91-151 (260)
63 KOG3665 ZYG-1-like serine/thre 97.1 0.00019 4.2E-09 77.0 1.8 157 7-186 55-233 (699)
64 KOG4341 F-box protein containi 96.9 7.2E-05 1.6E-09 72.2 -3.3 80 13-92 139-226 (483)
65 KOG2123 Uncharacterized conser 96.4 0.00013 2.8E-09 66.7 -5.2 98 173-281 19-123 (388)
66 KOG2123 Uncharacterized conser 96.3 0.00012 2.6E-09 66.8 -5.9 105 9-132 16-123 (388)
67 KOG4341 F-box protein containi 96.2 0.00018 3.8E-09 69.6 -5.8 63 226-288 345-414 (483)
68 KOG2739 Leucine-rich acidic nu 96.0 0.0042 9.2E-08 56.7 2.5 88 425-514 40-130 (260)
69 KOG4308 LRR-containing protein 95.2 0.00019 4.1E-09 73.7 -10.6 164 14-189 89-278 (478)
70 KOG4308 LRR-containing protein 94.9 0.00057 1.2E-08 70.2 -8.0 169 3-187 106-304 (478)
71 PF00560 LRR_1: Leucine Rich R 94.6 0.018 3.9E-07 31.1 1.0 19 151-170 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.5E-07 31.3 0.9 12 60-71 2-13 (22)
73 PF13504 LRR_7: Leucine rich r 93.3 0.054 1.2E-06 27.1 1.3 14 13-26 2-15 (17)
74 KOG1947 Leucine rich repeat pr 93.1 0.032 7E-07 58.5 0.7 83 10-93 186-280 (482)
75 TIGR00864 PCC polycystin catio 92.8 0.06 1.3E-06 64.9 2.4 35 506-541 1-37 (2740)
76 KOG3864 Uncharacterized conser 92.6 0.014 3.1E-07 51.2 -2.2 78 13-92 102-186 (221)
77 KOG0473 Leucine-rich repeat pr 92.5 0.0048 1.1E-07 55.1 -5.4 86 425-513 39-124 (326)
78 smart00370 LRR Leucine-rich re 91.9 0.11 2.5E-06 29.2 1.6 13 477-489 3-15 (26)
79 smart00369 LRR_TYP Leucine-ric 91.9 0.11 2.5E-06 29.2 1.6 13 477-489 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 91.5 0.15 3.3E-06 28.7 1.9 21 452-472 2-22 (26)
81 smart00370 LRR Leucine-rich re 91.5 0.15 3.3E-06 28.7 1.9 21 452-472 2-22 (26)
82 KOG1947 Leucine rich repeat pr 90.1 0.096 2.1E-06 54.9 0.2 90 6-95 208-308 (482)
83 KOG3864 Uncharacterized conser 88.1 0.046 1E-06 48.1 -3.1 82 430-511 103-187 (221)
84 PF13516 LRR_6: Leucine Rich r 87.7 0.19 4.2E-06 27.6 0.3 20 81-100 1-20 (24)
85 PF13516 LRR_6: Leucine Rich r 87.2 0.27 5.9E-06 27.0 0.7 20 149-168 2-21 (24)
86 KOG0473 Leucine-rich repeat pr 85.6 0.041 8.9E-07 49.4 -4.8 58 430-489 67-124 (326)
87 smart00365 LRR_SD22 Leucine-ri 81.1 1.3 2.9E-05 24.9 1.8 16 12-27 2-17 (26)
88 smart00364 LRR_BAC Leucine-ric 79.9 1.3 2.7E-05 24.9 1.4 18 500-518 2-19 (26)
89 KOG4242 Predicted myosin-I-bin 74.0 17 0.00036 36.9 8.2 133 147-288 163-312 (553)
90 KOG3763 mRNA export factor TAP 70.5 1.7 3.7E-05 44.5 0.6 39 10-48 216-254 (585)
91 smart00368 LRR_RI Leucine rich 67.2 4.3 9.4E-05 23.2 1.6 16 12-27 2-17 (28)
92 smart00082 LRRCT Leucine rich 56.5 5.4 0.00012 26.5 0.9 10 533-542 1-10 (51)
93 KOG3763 mRNA export factor TAP 48.1 9.4 0.0002 39.4 1.4 62 35-96 215-284 (585)
94 smart00367 LRR_CC Leucine-rich 42.7 18 0.00038 20.1 1.4 13 37-49 1-13 (26)
95 TIGR00864 PCC polycystin catio 42.6 16 0.00035 45.5 2.4 30 435-464 2-31 (2740)
96 KOG4242 Predicted myosin-I-bin 36.3 61 0.0013 33.1 4.8 59 128-186 216-281 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-53 Score=477.41 Aligned_cols=505 Identities=30% Similarity=0.429 Sum_probs=427.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCC-CCchhhhcCCCCCCcEEEccCCCCCCC--CCcCCcccEEEccCCcCCCCCCccccC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLAN-CSDWFQVIGKLHSLKTLTSHSCYLRPL--SNISSNFVSIDLSFNQLQGSIPDSSQH 80 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 80 (574)
++..|..+++|++|+|++|.++. +|. ..+..+++|++|++++|++++. ....++|++|++++|.+++..|..++.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPD--DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCCh--HHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 46778999999999999999985 455 1456999999999999998765 334589999999999999899999999
Q ss_pred CCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCE
Q 041121 81 MVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKR 153 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~ 153 (574)
+++|++|++++|.+.+..|..+.++. +|++|.+++ +|. .+..+++ |++|++++|++.+..+. +.++++|++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKS-LKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCC-ccEEECcCCccCCcCChhHhcCCCCCE
Confidence 99999999999999989999888775 778888887 676 8999998 99999999999987777 999999999
Q ss_pred EEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCc
Q 041121 154 LYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSS 230 (574)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~ 230 (574)
|++++|.+.+..|..|.++++|++|++++|.++ +.+|.. +..+++|+.|++++|.+.+.+|.. +++|+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS--------GPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeee--------ccCchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 999999999899999999999999999998765 244544 567889999999999999887764 67899
Q ss_pred EEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccc--
Q 041121 231 FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQ-- 308 (574)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~-- 308 (574)
.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++++.++...
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 999999999988888888899999999999999888898899999999999999999988888888777776655322
Q ss_pred -------ccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCc
Q 041121 309 -------QFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMT 381 (574)
Q Consensus 309 -------~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 381 (574)
.+..++++ +.+++++|++.+..|..+..++.|+.|++++|.+++..+..+..+++|+
T Consensus 392 l~~~~p~~~~~~~~L----------------~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 392 LEGEIPKSLGACRSL----------------RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred ecccCCHHHhCCCCC----------------CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 11112222 7788888888888888888888888888888888887777777888888
Q ss_pred cccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCC
Q 041121 382 QERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR 461 (574)
Q Consensus 382 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 461 (574)
.+++++|.+........+...+..+.+.++.+ .+..+..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 532 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQF---SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCcc---CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCC
Confidence 88888877643222222334455555555433 344556677899999999999999999999999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 462 NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 462 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|.+++.+|..|.++++|++|++++|++++.+|..+..+++|+.+++++|++.|.+|...++..+....+.|||.+|+.+
T Consensus 533 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999888888889999999999855
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-49 Score=447.78 Aligned_cols=498 Identities=31% Similarity=0.367 Sum_probs=426.7
Q ss_pred CCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC-----CCcCCcccEEEccCCcCCCCCCccccCCCCC
Q 041121 11 LHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL-----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYL 84 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L 84 (574)
..+++.|++++|.++.. +. +|..+++|++|++++|++++. .....+|++|++++|++++.+|. ..+++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~---~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS---AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CCcEEEEEecCCCccccCCh---HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 45799999999999887 55 899999999999999998743 22348999999999999887775 568999
Q ss_pred CEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 85 EHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 85 ~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
++|++++|.+.+..|..++.+. ++++|.+.+ +|. .+.++++ |++|++++|.+.+..+. +..+++|++|+++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 9999999999988998888775 778898876 777 8999999 99999999999988777 9999999999999
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEc
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNL 234 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L 234 (574)
+|.+.+..|..|.++++|++|++++|.++ +.+|.. +..+++|+.|++++|.+.+..|.. +.+|++|++
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLT--------GPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCceec--------cccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 99999999999999999999999998775 345554 788999999999999999887765 689999999
Q ss_pred CCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCc
Q 041121 235 SKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRT 314 (574)
Q Consensus 235 ~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~ 314 (574)
++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.++...+
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n----- 366 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN----- 366 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC-----
Confidence 999999888888889999999999999999999999999999999999999999999998888888876663321
Q ss_pred cceeeeccccccccccc-----cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCc
Q 041121 315 VFIVWELLTTQTFESWE-----ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 315 ~l~~l~~~~~~~~~~~~-----~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~ 389 (574)
...+.+|.+. .+.+++++|++.+..|..+..+++|+.|++++|++++..|..|..++.|+.+++++|.
T Consensus 367 -------~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 367 -------NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred -------eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 1111122111 1788999999999999999999999999999999998899999999999999999988
Q ss_pred cccc-cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC
Q 041121 390 IKVY-YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468 (574)
Q Consensus 390 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 468 (574)
+... +..+...+.+..+.+.++.... ..+..+ ..++|+.|++++|++++..|..|..+++|++|+|++|++.+.+
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~---~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFG---GLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeee---ecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC
Confidence 7542 2233445566666666655432 122222 4578999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 469 ~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|..+.++++|++|++++|++++.+|..|..+++|+.|+|++|++++.+|.. ..+..++.+++++|++.+..|
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999986 457889999999999887665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-43 Score=337.93 Aligned_cols=410 Identities=22% Similarity=0.214 Sum_probs=273.3
Q ss_pred cEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccc
Q 041121 41 KTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA 114 (574)
Q Consensus 41 ~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~ 114 (574)
+.|+++++.+..+ ..+++.-++|++++|.+....+..|.++++|+.+++..|.++ .+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-------------- 119 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-------------- 119 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--------------
Confidence 4577777777765 223356677888888888777777888888888888888877 5553
Q ss_pred cccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI 193 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 193 (574)
|+.....|+.|+|.+|.|+.+... +..++.|+.|||+.|.|+.+.-..|..=.++++|+|++|+|+++....|
T Consensus 120 ------f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F 193 (873)
T KOG4194|consen 120 ------FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF 193 (873)
T ss_pred ------ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc
Confidence 222222266666666666655544 6666666666666666665555556655666666666666665554443
Q ss_pred cccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcc
Q 041121 194 KGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDC 270 (574)
Q Consensus 194 ~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 270 (574)
. .+.+|..|.++.|+++..++.. ++.|+.|+|..|+|..+....|.++++|+.|.|..|.|......+
T Consensus 194 ~---------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 194 D---------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred c---------ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 2 2234444555555554433322 455566666666666555556666666666666666666555566
Q ss_pred hhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh
Q 041121 271 WWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350 (574)
Q Consensus 271 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~ 350 (574)
|.++.++++|+|+.|++.....+++.++.+| +.++|++|.|..+-+..+
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L-------------------------------~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSL-------------------------------EQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchh-------------------------------hhhccchhhhheeecchh
Confidence 6666666666666666665555566666666 556666666666666666
Q ss_pred cCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcc
Q 041121 351 CQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLI 430 (574)
Q Consensus 351 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 430 (574)
..+++|++|+|++|+|+...+..|. .+..|
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~--------------------------------------------------~L~~L 343 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFR--------------------------------------------------VLSQL 343 (873)
T ss_pred hhcccceeEeccccccccCChhHHH--------------------------------------------------HHHHh
Confidence 6666666666666666644444443 34556
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|+|++|.+...-..+|.++++|++|||++|.++..+. ..|.++++|+.|++.+|+|..+.-.+|.++..|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 888888898887777788889999999999998876543 35778889999999999998777778999999999999
Q ss_pred cCCcCcccCCCcchhcccCcccccCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLP----------------NKCRDEESAPGPGMTEGRD 561 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~----------------~~c~~~~~~~~~~~~~~~~ 561 (574)
.+|.|...-|..+.-..++++.+..-.++|||++. ..|+.|++-..-.+...+.
T Consensus 424 ~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~ 493 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDT 493 (873)
T ss_pred CCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeech
Confidence 99998855566655447888888777789999862 2587777755444443333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-42 Score=330.27 Aligned_cols=357 Identities=21% Similarity=0.216 Sum_probs=229.0
Q ss_pred EEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCc
Q 041121 42 TLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNK 112 (574)
Q Consensus 42 ~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~ 112 (574)
.|++++|++.++ +.-.++|+++.+.+|.++ .+|.......+|+.|+|.+|.|+....+.+..+. +|+.|.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 355555555555 122255555555555555 4454444445566666666655544444333221 444444
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANI 191 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 191 (574)
|++||...|..=.+ +++|+|++|+|+....+ |.++.+|..|.|+.|+|+...+..|+++++|+.|+|..|+|..+...
T Consensus 161 is~i~~~sfp~~~n-i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVN-IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhcccCCCCCCCCC-ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 44444435555455 77888888888766666 77777888888888888766667777788888888888777654433
Q ss_pred cccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 192 QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 192 ~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
.|.| +++|+.|.|..|.|.......|..+.++++|+|+.|+++..-..++
T Consensus 240 tFqg------------------------------L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 240 TFQG------------------------------LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred hhcC------------------------------chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 3322 4566667777777777777777777777777777777776666677
Q ss_pred hcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhc
Q 041121 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC 351 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~ 351 (574)
.+++.|+.|++|+|.|...-++.+...++| ++++|++|.+....+..|.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL-------------------------------~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-------------------------------KELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccc-------------------------------eeEeccccccccCChhHHH
Confidence 777777777777777777777777777777 7777777777777777777
Q ss_pred CCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCccc
Q 041121 352 QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIK 431 (574)
Q Consensus 352 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 431 (574)
.+..|++|+|+.|.+.......|.++.+|++|+++.|.+.-.- ......|.++++|+
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I-----------------------EDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI-----------------------EDAAVAFNGLPSLR 395 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE-----------------------ecchhhhccchhhh
Confidence 7777777777777777555556666666655555554443110 01122344566667
Q ss_pred EEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 432 SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 432 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
.|+|.+|++..+...+|.++++|++|+|.+|.|..+-+.+|..+ .|++|.+..
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777765555667777777777777777766667777666 666666543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.4e-40 Score=304.38 Aligned_cols=470 Identities=23% Similarity=0.257 Sum_probs=328.6
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEE
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 88 (574)
.-|+.+++++|.++.+.. .+.++..|.+|+.++|++...+.. ...++.++.++|+++ .+|+.+..++.|+.++
T Consensus 45 v~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhccH---hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 356778888888887744 578888888888888888776222 257778888888887 7788888888888888
Q ss_pred ccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccc
Q 041121 89 LMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNG 163 (574)
Q Consensus 89 L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~ 163 (574)
+++|++. ..|+.++.+. +..+|+++.+|. ++..+.+ +..+++.+|++....+....++.|++||...|.++
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~-~~~~~~~-l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPE-DMVNLSK-LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccccCch-HHHHHHH-HHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-
Confidence 8888887 6666777665 456788888888 7777777 88888888888877776334888888888888887
Q ss_pred ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCccc
Q 041121 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFS 240 (574)
Q Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~ 240 (574)
.+|..++.+.+|+.|++.+|+|..++ . |..|..|.++.++.|++.-..... +.++..|||+.|+++
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lP---------e--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLP---------E--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCC---------C--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 77778888888888888888877443 1 566777788888888777433322 567777888888888
Q ss_pred ccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccc--ccCccccccccccccCcccee
Q 041121 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGF--LQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+++. ....+++|++||+++|.|+ ..|..++++ .|+.|-+.+|.+...-.+.+.. -.-|+++.....-.+.++-+.
T Consensus 266 e~Pd-e~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 266 EVPD-EICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred cCch-HHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 6654 4446678888888888888 556677787 8888888888876321111100 011111111000000000000
Q ss_pred eecccccccccccc---------ceEEecCceeccCCChhhcCC---CCCCEEEccCCcccccCCccccccccCcc-ccC
Q 041121 319 WELLTTQTFESWEE---------RFVRLKSNKFHGKTPFQLCQF---AFLQVLDLSLNNISGKIPKCFNNFTAMTQ-ERS 385 (574)
Q Consensus 319 l~~~~~~~~~~~~~---------~~l~L~~n~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-l~l 385 (574)
-. ...++.|.+.. +.+++++-+++. +|...+.- .-...++++.|++. .+|..+..+..+.. +.+
T Consensus 343 ~~-e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 343 GT-ETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL 419 (565)
T ss_pred cc-cccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence 00 11111122211 667777777764 34333222 23677788888887 66666555554433 224
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
++|.+.. .+..++.++.|+.|+|++|.+. .+|..++.+..|++|+++.|++.
T Consensus 420 snn~isf---------------------------v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 420 SNNKISF---------------------------VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred hcCcccc---------------------------chHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 4444332 2234467788899999999887 88888999999999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCC
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~ 536 (574)
..|..+..+..++.+-.++|++..+.++.+.+|.+|.+|||.+|.+. .+|+. ..+++++.+.+.|||+.
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 78888888888899989999999888888999999999999999998 66665 78899999999999977
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.9e-38 Score=289.69 Aligned_cols=430 Identities=24% Similarity=0.308 Sum_probs=325.5
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCCcccEEEccCCcCCCCCCcccc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
.+.+.+.++..|.+|++++|+++..|. +++.+..++.++.++|++..++ .-..+++.++.++|.+. ..++.++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~---aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPA---AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCH---HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence 345678899999999999999999988 8999999999999999998872 22368899999999998 6778888
Q ss_pred CCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEE
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRL 154 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 154 (574)
.+-.|..++..+|+++ ..|.++..+. ++.+|+++.+|+ ..-+|.. |++||...|-+...+++++++.+|+.|
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~-L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKR-LKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCH-HHHHHHH-HHhcccchhhhhcCChhhcchhhhHHH
Confidence 9999999999999998 6777776654 778888888887 4444887 888988888888777778888888888
Q ss_pred EccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEE
Q 041121 155 YLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFL 232 (574)
Q Consensus 155 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L 232 (574)
++.+|+|. ..| .|.+|..|++|.++.|+|+. +|+...+.++++..||+.+|+++..+... +.+|++|
T Consensus 212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~---------lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM---------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL 280 (565)
T ss_pred Hhhhcccc-cCC-CCCccHHHHHHHhcccHHHh---------hHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence 88888887 555 78888888888888888774 44444567778888888888888654443 6778888
Q ss_pred EcCCCcccccccccccCCCCccEEECCCCCCCC-------------------------------------C-CCcc---h
Q 041121 233 NLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG-------------------------------------K-LPDC---W 271 (574)
Q Consensus 233 ~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------------------~-~~~~---~ 271 (574)
|+++|.|++.+. .++++ .|+.|.+.+|.+.. . .+.. .
T Consensus 281 DlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 281 DLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred cccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 888888886654 44555 67777777775420 0 0111 1
Q ss_pred hcCCCCcEEEccCcccccCCCc-ccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh
Q 041121 272 WMFDSLVILDLGNNSFSGRIPD-SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL 350 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~ 350 (574)
..+.+.++|++++-+++ .+|+ .|..-++=-. ..++++.|++.. +|..+
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~V-----------------------------t~VnfskNqL~e-lPk~L 407 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIV-----------------------------TSVNFSKNQLCE-LPKRL 407 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcce-----------------------------EEEecccchHhh-hhhhh
Confidence 23557888888888888 4444 3332221000 567777777763 44444
Q ss_pred cCCCC-CCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCc
Q 041121 351 CQFAF-LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGL 429 (574)
Q Consensus 351 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (574)
..+.. .+.+.+++|.+. .+|..+..++++..+++++|.+...+.. +.++..
T Consensus 408 ~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e---------------------------~~~lv~ 459 (565)
T KOG0472|consen 408 VELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEE---------------------------MGSLVR 459 (565)
T ss_pred HHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchh---------------------------hhhhhh
Confidence 33333 234555556555 6666677777777777777766533222 234555
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+.|+++.|++. ..|..+..+..|+.+-.++|+++.+.++.+.+|.+|.+||+.+|.+. .+|..+++|++|+.|+++|
T Consensus 460 Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 460 LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecC
Confidence 899999999998 99999999999999999999999888888999999999999999999 6778899999999999999
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|.|.
T Consensus 538 Npfr 541 (565)
T KOG0472|consen 538 NPFR 541 (565)
T ss_pred CccC
Confidence 9997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-35 Score=298.96 Aligned_cols=436 Identities=26% Similarity=0.309 Sum_probs=294.2
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCC---cCCcccEEEccCCcCCCCCCccccCCCC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSN---ISSNFVSIDLSFNQLQGSIPDSSQHMVY 83 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 83 (574)
++.+.-.|++||+++|.+...|. .+..+++|+.|++++|.|..++. -..+|+++.|.+|.+. ..|..+..+++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~---~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lkn 115 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPI---QITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKN 115 (1081)
T ss_pred HhhheeeeEEeeccccccccCCc---hhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhc
Confidence 44444558888888888888877 78888888888888888887732 1268888888888887 67888888888
Q ss_pred CCEEEccCCcCccCchhhhhccc-----CCCCC-ccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEc
Q 041121 84 LEHLSLMFNELEGGIPKFFGNML-----NLSDN-KLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYL 156 (574)
Q Consensus 84 L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n-~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L 156 (574)
|++||+++|.+. ..|..+..+. ..++| ++..++. . . ++.+++..|.+.+.+.. ...++. .|+|
T Consensus 116 l~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~-~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldL 185 (1081)
T KOG0618|consen 116 LQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----T-S-IKKLDLRLNVLGGSFLIDIYNLTH--QLDL 185 (1081)
T ss_pred ccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----c-c-chhhhhhhhhcccchhcchhhhhe--eeec
Confidence 888888888887 6666655543 45555 2222322 1 1 56666666666654443 444444 5778
Q ss_pred cCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcC
Q 041121 157 SDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLS 235 (574)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~ 235 (574)
++|.+. .-.+..+++|+.+..+.|++..+. ...++++.|+.+.|.++...+.. +.++++++++
T Consensus 186 r~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-------------~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 186 RYNEME---VLDLSNLANLEVLHCERNQLSELE-------------ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDIS 249 (1081)
T ss_pred ccchhh---hhhhhhccchhhhhhhhcccceEE-------------ecCcchheeeeccCcceeeccccccccceeeecc
Confidence 777775 234566777777777777776442 22346677777777777544443 6677777777
Q ss_pred CCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcc
Q 041121 236 KNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTV 315 (574)
Q Consensus 236 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 315 (574)
.|++++++ .+...+++|+.+...+|.++ ..|.......+|+.|++.+|.+. -+|.....+.+|
T Consensus 250 ~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL-------------- 312 (1081)
T KOG0618|consen 250 HNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL-------------- 312 (1081)
T ss_pred hhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee--------------
Confidence 77777666 55666777777777777775 55666666677777777777776 445555555555
Q ss_pred ceeeeccccccccccccceEEecCceeccCCChhhcCCCC-CCEEEccCCcccccCC-ccccccccCccccCCCCccccc
Q 041121 316 FIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAF-LQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVY 393 (574)
Q Consensus 316 l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~ 393 (574)
++|+|..|++....+..+..... ++.|+.+.|++. ..| -.=.....|+.+++.+|.+.
T Consensus 313 -----------------~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt-- 372 (1081)
T KOG0618|consen 313 -----------------RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT-- 372 (1081)
T ss_pred -----------------eeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc--
Confidence 66666666666444333333332 555555666555 222 11122344555555555542
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+.+...+.+++.|+.|+|++|++.......+.++..|++|+||||+++ .+|+.+.
T Consensus 373 ------------------------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva 427 (1081)
T KOG0618|consen 373 ------------------------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA 427 (1081)
T ss_pred ------------------------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence 333444556778888999999887555567788888889999999888 5668888
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc-ccCCCcchhcccCcccccCCCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS-GKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
.++.|++|....|++. ..| .+..++.|+.+|+|.|+++ ..+|.....+.++.++++||+|.
T Consensus 428 ~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 8888888888888888 455 6788888888999988888 44555544578888888888863
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-33 Score=274.95 Aligned_cols=364 Identities=23% Similarity=0.264 Sum_probs=241.4
Q ss_pred cCCCCCcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 9 LRLHSLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
+-++-++-.|+++|.++.. |. ....+.+++.|.|.+.++. .+|+.++++.+|++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~---~v~qMt~~~WLkLnrt~L~---------------------~vPeEL~~lqkLEH 59 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPH---DVEQMTQMTWLKLNRTKLE---------------------QVPEELSRLQKLEH 59 (1255)
T ss_pred cccceeecccccCCcCCCCcCch---hHHHhhheeEEEechhhhh---------------------hChHHHHHHhhhhh
Confidence 3455667777777777644 55 5666777777766665554 67888888888999
Q ss_pred EEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc--ccCCCCCCCCCCCEEEccCcccccc
Q 041121 87 LSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT--GPIPDLGGFSSMKRLYLSDNLLNGT 164 (574)
Q Consensus 87 L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~L~~n~i~~~ 164 (574)
|.+++|++... -. .+..+|. |+.+.+..|++. ++++++..+..|+.|||++|++. .
T Consensus 60 Ls~~HN~L~~v-hG-------------------ELs~Lp~-LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-E 117 (1255)
T KOG0444|consen 60 LSMAHNQLISV-HG-------------------ELSDLPR-LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-E 117 (1255)
T ss_pred hhhhhhhhHhh-hh-------------------hhccchh-hHHHhhhccccccCCCCchhcccccceeeecchhhhh-h
Confidence 88888887732 11 4555676 888888888775 45555778899999999999998 7
Q ss_pred cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCccccc
Q 041121 165 INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRS 242 (574)
Q Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~ 242 (574)
.|..+..-.++-+|+||+|+|..|+ ...+.+++-|-.||+++|++...+|.. +..|+.|.|++|.+...
T Consensus 118 vP~~LE~AKn~iVLNLS~N~IetIP---------n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIETIP---------NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred cchhhhhhcCcEEEEcccCccccCC---------chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence 8888888889999999999888544 333566666777778888777666654 66777777777766654
Q ss_pred ccccccCCCCccEEECCCCCCC-CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeec
Q 041121 243 ISLCSISGSKLTYIDLSSNLLS-GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWEL 321 (574)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~ 321 (574)
.-..+-.+.+|+.|.+++.+=+ .-+|..+.++.+|..+|+|.|.+. .+|+++..+++|
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-------------------- 247 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-------------------- 247 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh--------------------
Confidence 4444445556666666665432 235666777777777777777776 566666666666
Q ss_pred cccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCC
Q 041121 322 LTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPP 401 (574)
Q Consensus 322 ~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 401 (574)
+.++|++|+|+. +......+.+|++|+||.|+++ ..|.++..++.|
T Consensus 248 -----------rrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL--------------------- 293 (1255)
T KOG0444|consen 248 -----------RRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL--------------------- 293 (1255)
T ss_pred -----------heeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHH---------------------
Confidence 556666666653 2223334455666666666665 555555554444
Q ss_pred ccccccccCcccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 041121 402 YVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDF 480 (574)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 480 (574)
+.|++.+|+++ .-+|..++.+.+|+++..++|.+. ..|+.+..++.|+.
T Consensus 294 -----------------------------~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 294 -----------------------------TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred -----------------------------HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 33444444443 235566666666666666666665 66666666666666
Q ss_pred EeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 481 LDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 481 L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
|.|++|++- ..|+++.-++.|+.||+..|.=-
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 666666665 56666666666666666666543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.1e-32 Score=262.99 Aligned_cols=366 Identities=23% Similarity=0.290 Sum_probs=278.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCC-CCCccc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQG-SIPDSS 78 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~-~~~~~~ 78 (574)
..|..+..+++++.|.|...++..+|. .++.|.+|++|.+++|++..+.+- .+.|+.+++..|+++. -+|..+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPe---EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPE---ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChH---HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 367888999999999999999999988 899999999999999999988332 3889999999999974 378888
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
.++..|++||||+|+++ ..|.. +..-.+ +-.|+|++|+|..++.. |.+++.|-.|||+
T Consensus 100 F~l~dLt~lDLShNqL~-EvP~~-------------------LE~AKn-~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLR-EVPTN-------------------LEYAKN-SIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred cccccceeeecchhhhh-hcchh-------------------hhhhcC-cEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 99999999999999998 67764 334455 78889999999877666 8889999999999
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCC
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKN 237 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n 237 (574)
+|++. ..|.....+..|++|.|++|++...-- ..+|. +++|+.|.+++.+-+-
T Consensus 159 ~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL----rQLPs-----mtsL~vLhms~TqRTl----------------- 211 (1255)
T KOG0444|consen 159 NNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL----RQLPS-----MTSLSVLHMSNTQRTL----------------- 211 (1255)
T ss_pred cchhh-hcCHHHHHHhhhhhhhcCCChhhHHHH----hcCcc-----chhhhhhhcccccchh-----------------
Confidence 99997 677778888899999999988763321 12222 3344444444443221
Q ss_pred cccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccce
Q 041121 238 RFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFI 317 (574)
Q Consensus 238 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~ 317 (574)
...|.++..+.+|..+|+++|.+. ..|+.+..+++|+.|+||+|.|+ ..........++
T Consensus 212 ---~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l---------------- 270 (1255)
T KOG0444|consen 212 ---DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL---------------- 270 (1255)
T ss_pred ---hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh----------------
Confidence 122334445677788888888887 77888888888888888888887 444444555555
Q ss_pred eeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc-cCCccccccccCccccCCCCcccccccc
Q 041121 318 VWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKVYYYT 396 (574)
Q Consensus 318 ~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 396 (574)
.+++++.|+++ .+|.+++.++.|+.|++.+|+++- -+|..++.+..
T Consensus 271 ---------------EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~----------------- 317 (1255)
T KOG0444|consen 271 ---------------ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ----------------- 317 (1255)
T ss_pred ---------------hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh-----------------
Confidence 77888888887 688899999999999999998862 23444444333
Q ss_pred ccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCC
Q 041121 397 FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLK 476 (574)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 476 (574)
|+++..++|.+. .+|+.+..|..|+.|.|++|++- ..|+++.-++
T Consensus 318 ---------------------------------Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 318 ---------------------------------LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred ---------------------------------hHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 577888888887 89999999999999999999987 6888999999
Q ss_pred CCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 477 SLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 477 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
.|++||+..|.---..|.--..-++|..-+++
T Consensus 363 ~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99999999996553555443333556654444
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=6.6e-32 Score=275.29 Aligned_cols=441 Identities=23% Similarity=0.265 Sum_probs=306.9
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCCcccEEEccCCcCCCCCCccccC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISSNFVSIDLSFNQLQGSIPDSSQH 80 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~~ 80 (574)
+|..+-.--.++.|+++.|.+-..| .+...+.-+|+.|++++|.+...+ ...+.|+.|+++.|.|. ..|.+..+
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 4555555555788888888876654 224555566888888888887762 22368888888888887 66777888
Q ss_pred CCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEE
Q 041121 81 MVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLY 155 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 155 (574)
+.+|++|.|.+|++. ..|..+..+. +++.|++..+|. .+..+.. ++.+..++|... ..++.. .++.++
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~-~~~~~~s~N~~~---~~lg~~-~ik~~~ 162 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPL-VIEVLTA-EEELAASNNEKI---QRLGQT-SIKKLD 162 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCch-hHHhhhH-HHHHhhhcchhh---hhhccc-cchhhh
Confidence 888888888888887 6676555433 555666666665 5555555 556666665111 112222 266666
Q ss_pred ccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcC
Q 041121 156 LSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLS 235 (574)
Q Consensus 156 L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~ 235 (574)
+..|.+.+.++.....+.. .|+|++|.+..+. ...+..++.+....|++....- .-++++.|+.+
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d------------ls~~~~l~~l~c~rn~ls~l~~-~g~~l~~L~a~ 227 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD------------LSNLANLEVLHCERNQLSELEI-SGPSLTALYAD 227 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhhhhh------------hhhccchhhhhhhhcccceEEe-cCcchheeeec
Confidence 6666666666666655555 6777777665221 3455666677777776653221 13677777788
Q ss_pred CCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcc
Q 041121 236 KNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTV 315 (574)
Q Consensus 236 ~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 315 (574)
.|.++...... ...+|+++++++|+++ ..|+|...+.+|+.++..+|.++ ..|..+...++|
T Consensus 228 ~n~l~~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L-------------- 289 (1081)
T KOG0618|consen 228 HNPLTTLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL-------------- 289 (1081)
T ss_pred cCcceeecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH--------------
Confidence 88777443322 3467788888888887 45578888888888888888885 666666666666
Q ss_pred ceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccc-cc-cCccccCCCCccccc
Q 041121 316 FIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN-FT-AMTQERSSDPTIKVY 393 (574)
Q Consensus 316 l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~l~l~~~~~~~~ 393 (574)
+.++...|.+.. +|....+.++|++|+|..|++. ..|+.|-. .. .+..+..+.+++...
T Consensus 290 -----------------~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 290 -----------------VSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred -----------------HHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccc
Confidence 667777777774 3445566778888888888887 44443222 11 134444444444322
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+. +. -..++.|+.|++.+|.+++..-..+.+..+|+.|+|++|++.......+.
T Consensus 351 p~------------~~--------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 351 PS------------YE--------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cc------------cc--------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 20 00 02456689999999999988888899999999999999999966667788
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNP 534 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np 534 (574)
++..|++|+||+|+++ .+|.....++.|++|...+|+|. +.|...+++.++.++++.|.
T Consensus 405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 9999999999999999 77899999999999999999999 89988899999999998874
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=7.4e-29 Score=230.28 Aligned_cols=421 Identities=20% Similarity=0.188 Sum_probs=269.2
Q ss_pred EEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc------CCCCCccc
Q 041121 42 TLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML------NLSDNKLA 114 (574)
Q Consensus 42 ~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~n~l~ 114 (574)
..+.++-.++.+ .++++.-++++|..|+|+.+++.+|+.+++|+.|||++|.|+.+.|.+|.++. .+++|+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 456666677777 56778999999999999999999999999999999999999999999999876 66779999
Q ss_pred cccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI 193 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 193 (574)
.+|..+|.++.. ++.|.+.-|++.-+..+ |..+++|..|.+.+|.++.+....|..+..++.+.+..|.+-..-.-..
T Consensus 130 ~l~k~~F~gL~s-lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 130 DLPKGAFGGLSS-LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhHhhhHHH-HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 999999999998 99999999999987777 9999999999999999996666699999999999999988431110000
Q ss_pred -c---ccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEE----EcCCCcccccccccccCCCCccEEECCCCCCC
Q 041121 194 -K---GKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFL----NLSKNRFSRSISLCSISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 194 -~---~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L----~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~ 264 (574)
. ...|. +++......-..+.+.++..+.+.. ...++.+ ....+.....+..+|..+++|++|+|++|+|+
T Consensus 209 la~~~a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 209 LADDLAMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhHHhhchh-hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 0 00010 0222222222233333333322211 1122221 22222233333456777888888888888888
Q ss_pred CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceecc
Q 041121 265 GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344 (574)
Q Consensus 265 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~ 344 (574)
++.+.+|.++..+++|.|..|++...-...|.++..| ++++|.+|+|+.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-------------------------------~tL~L~~N~it~ 336 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-------------------------------KTLSLYDNQITT 336 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-------------------------------eeeeecCCeeEE
Confidence 7777888888888888888888876666677777777 778888888888
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREY 423 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (574)
..|.+|....+|.+|+|-.|.+.....- ++. ..|+.-...++ .....+..++.+.+++..+..+.-..++.
T Consensus 337 ~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~--~Wlr~~~~~~~------~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee 408 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG--EWLRKKSVVGN------PRCQSPGFVRQIPISDVAFGDFRCGGPEE 408 (498)
T ss_pred EecccccccceeeeeehccCcccCccchHHHH--HHHhhCCCCCC------CCCCCCchhccccchhccccccccCCccc
Confidence 8888888888888888887776532211 110 01111000000 00111112222222222222221111100
Q ss_pred c---------cccCcc-cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 041121 424 R---------STLGLI-KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIP 493 (574)
Q Consensus 424 ~---------~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 493 (574)
. ..++-+ ++...|+..++ .+|..+. ..-.+|++.+|.++ .+|+. .+.+| .+|+++|+|....-
T Consensus 409 ~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn 481 (498)
T KOG4237|consen 409 LGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSN 481 (498)
T ss_pred cCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhc
Confidence 0 001111 23344555554 4443332 23456777777777 34443 45666 77888887776666
Q ss_pred CCccCCCCCCEEeccCC
Q 041121 494 SSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 494 ~~l~~l~~L~~L~Ls~N 510 (574)
..|.++.+|.+|-|++|
T Consensus 482 ~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 482 YTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccccchhhhheeEEecC
Confidence 67777777777777765
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-27 Score=221.01 Aligned_cols=325 Identities=20% Similarity=0.163 Sum_probs=240.6
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccC-ccc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN-NSF 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 287 (574)
..++.++-.++.++...++..++++|..|.|+.+++.+|..+++|+.|||++|.|+.+.|++|.++++|.+|.+.+ |+|
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3567777778877777789999999999999999999999999999999999999999999999999988877766 999
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++...+.|.++.++ +.+.+..|++..+....|..++++..|.+-.|.+.
T Consensus 129 ~~l~k~~F~gL~sl-------------------------------qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSL-------------------------------QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhhHhhhHHHH-------------------------------HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 98888899999999 67888888888888889999999999999999988
Q ss_pred ccCCccccccccCccccCCCCcccc-cccc------------ccCCCccccccccCcccccccCCCcccc-cccCcccEE
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKV-YYYT------------FVGPPYVHHYSFQDKVMPTWKGSGREYR-STLGLIKSL 433 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L 433 (574)
.+...+|..+..++.+.+..|.... .... +.+.....-..+.. ..........| ....++..-
T Consensus 178 ~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~---~Ri~q~~a~kf~c~~esl~s~ 254 (498)
T KOG4237|consen 178 SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY---KRINQEDARKFLCSLESLPSR 254 (498)
T ss_pred hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH---HHhcccchhhhhhhHHhHHHh
Confidence 5555588888888888776665211 0000 00000000000000 00001111111 111122111
Q ss_pred EccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 434 ELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 434 ~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
..+.+...++-| ..|.++++|++|+|++|+|+.+.+.+|.++..+++|.|..|+|..+....|.++..|+.|+|.+|+|
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCee
Confidence 122222222334 5789999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cccCCCcc-hhcccCcccccCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCCCCCCCcc
Q 041121 513 SGKIPTGT-QLQSFNGSVYAGNPELCGLPLP--------------NKCRDEESAPGPGMTEGRDDADTSE 567 (574)
Q Consensus 513 ~~~~p~~~-~~~~l~~~~l~~Np~~c~~~l~--------------~~c~~~~~~~~~~~~~~~~~~~~~~ 567 (574)
+..-|..+ ...++..+.+.+|||-|+|.+. ..|..+..-..-.+++.+-++-+|.
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred EEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 97777664 3677888899999999999973 2576666655556666665555554
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.5e-22 Score=228.40 Aligned_cols=331 Identities=21% Similarity=0.171 Sum_probs=217.3
Q ss_pred hcCCCCCCcEEEccCCCCCC-----------CCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhh
Q 041121 33 VIGKLHSLKTLTSHSCYLRP-----------LSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKF 101 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 101 (574)
+|.++++|++|.+..+.... ...++.+|+.|.+.++.++ .+|..| ...+|+.|++++|++. .++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~- 628 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD- 628 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc-
Confidence 78899999999887654321 1223457888888888877 556666 5678888888888776 3443
Q ss_pred hhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEcc
Q 041121 102 FGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLS 181 (574)
Q Consensus 102 ~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 181 (574)
.+..+++ |+.|+++++.....+|.+..+++|++|++++|..-..+|..+..+++|+.|+++
T Consensus 629 ------------------~~~~l~~-Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 629 ------------------GVHSLTG-LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ------------------ccccCCC-CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4456777 999999987655566678888999999999887666788889999999999999
Q ss_pred CCC-CCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCC
Q 041121 182 QNS-LTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSS 260 (574)
Q Consensus 182 ~N~-l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~ 260 (574)
+|. ++ .+|.. ..+++|+.|++++|.....+|..+.+|++|++++|.+..++... .+++|++|.+.+
T Consensus 690 ~c~~L~---------~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~ 756 (1153)
T PLN03210 690 RCENLE---------ILPTG--INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--RLENLDELILCE 756 (1153)
T ss_pred CCCCcC---------ccCCc--CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc--cccccccccccc
Confidence 853 33 33432 25678888888888766666666777888888888876654321 456777777766
Q ss_pred CCCC-------CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccc
Q 041121 261 NLLS-------GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEER 333 (574)
Q Consensus 261 n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 333 (574)
+... ...+..+...++|+.|++++|...+.+|..+..+++| +
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-------------------------------~ 805 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-------------------------------E 805 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-------------------------------C
Confidence 4321 1112222234566666666665555556556555555 5
Q ss_pred eEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCccc
Q 041121 334 FVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVM 413 (574)
Q Consensus 334 ~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (574)
.|++++|.....+|..+ .+++|+.|++++|......|.
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------------------------- 843 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD----------------------------------------- 843 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----------------------------------------
Confidence 55555554333334333 455566666665432212221
Q ss_pred ccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCCCCCCEEeCCCC
Q 041121 414 PTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQLKSLDFLDLSRN 486 (574)
Q Consensus 414 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 486 (574)
...+|+.|+|++|.++ .+|..+..+++|++|+|++|+ ++ .+|..+..+++|+.+++++|
T Consensus 844 ------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 ------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 1234677778887776 667777777788888887743 54 35556667777777777776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=3.5e-22 Score=211.04 Aligned_cols=268 Identities=23% Similarity=0.247 Sum_probs=194.3
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
..-..|++++++++.+|. .+. ++|+.|++++|+++.++...++|++|++++|+++. +|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~---~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD---CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCc---chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 457789999999998876 454 48999999999999998888999999999999984 4532 46889999999
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.++ .+|..+ .. |+.|++++|+++..+. ..++|++|++++|++.+. |..
T Consensus 272 N~L~-~Lp~lp----------------------~~-L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~L-p~l--- 320 (788)
T PRK15387 272 NPLT-HLPALP----------------------SG-LCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PAL--- 320 (788)
T ss_pred Cchh-hhhhch----------------------hh-cCEEECcCCccccccc---cccccceeECCCCccccC-CCC---
Confidence 9887 344321 22 7777888887775432 236788888888877743 332
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
...|+.|++++|.|+.++. . ..+|+.|++++|++++ +|..+.+|+.|++++|.+..++.. ..
T Consensus 321 p~~L~~L~Ls~N~L~~LP~---------l----p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l----~~ 382 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPT---------L----PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPAL----PS 382 (788)
T ss_pred cccccccccccCccccccc---------c----ccccceEecCCCccCC-CCCCCcccceehhhccccccCccc----cc
Confidence 2356777788877764432 1 1367788888888875 444567788888888888865532 35
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
+|+.|++++|.+++ +|.. .++|+.|++++|.+++ +|..+ .+|
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L------------------------------ 424 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGL------------------------------ 424 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhh------------------------------
Confidence 78888888888884 4433 3578888999988874 45432 234
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+.+++++|+++ .+|..++.+++|+.|+|++|++++..+..+..+
T Consensus 425 -~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 425 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 66888888887 567788888999999999999987776655433
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.6e-21 Score=216.85 Aligned_cols=309 Identities=18% Similarity=0.168 Sum_probs=220.4
Q ss_pred hhhhcCCCCCcEEECCCCCCCC-------CCchhhhcCCC-CCCcEEEccCCCCCCCCC-c-CCcccEEEccCCcCCCCC
Q 041121 5 LMRSLRLHSLRYLNLEENNLAN-------CSDWFQVIGKL-HSLKTLTSHSCYLRPLSN-I-SSNFVSIDLSFNQLQGSI 74 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~-------~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-~-~~~L~~L~Ls~n~i~~~~ 74 (574)
+.+|.++++|+.|.+..+.... +|. .|..+ .+|+.|.+.++.++.++. + ..+|++|++++|.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~---~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE---GFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCc---chhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cc
Confidence 3679999999999997664321 233 56665 469999999999888733 2 379999999999998 57
Q ss_pred CccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCE
Q 041121 75 PDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKR 153 (574)
Q Consensus 75 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~ 153 (574)
+..+..+++|+.|+|+++.....+| .+..+++ |++|++++|......|. +..+++|++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip--------------------~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP--------------------DLSMATN-LETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC--------------------ccccCCc-ccEEEecCCCCccccchhhhccCCCCE
Confidence 7888999999999999875433444 3445666 99999998765555555 888899999
Q ss_pred EEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEE
Q 041121 154 LYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFL 232 (574)
Q Consensus 154 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L 232 (574)
|++++|..-..+|..+ ++++|+.|++++|... +.+|.. ..+|+.|++++|.+...+... +++|++|
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--------~~~p~~----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL--------KSFPDI----STNISWLDLDETAIEEFPSNLRLENLDEL 752 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc--------cccccc----cCCcCeeecCCCccccccccccccccccc
Confidence 9998875444566554 6888999999887421 122322 357888999998877543332 6778888
Q ss_pred EcCCCcccc-------cccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 233 NLSKNRFSR-------SISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 233 ~L~~n~i~~-------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
.+.++.... ..+..+...++|++|++++|......|..+..+++|+.|++++|...+.+|... .+++|
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL---- 827 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL---- 827 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc----
Confidence 887644322 112222345789999999997766788899999999999999876544666554 56667
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|......|.. ..+|+.|+|++|.++ .+|..+..+++|+.+++
T Consensus 828 ---------------------------~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 828 ---------------------------ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred ---------------------------CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEEC
Confidence 77778776544444332 357888888888887 56767777777766665
Q ss_pred CC
Q 041121 386 SD 387 (574)
Q Consensus 386 ~~ 387 (574)
++
T Consensus 877 ~~ 878 (1153)
T PLN03210 877 NG 878 (1153)
T ss_pred CC
Confidence 54
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.2e-21 Score=206.91 Aligned_cols=252 Identities=25% Similarity=0.268 Sum_probs=200.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCC
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMV 82 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 82 (574)
.+|..+. ++|+.|++++|+++.+|. ..++|++|++++|+++.++...++|++|++++|.++. +|.. ..
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~-Lp~l---p~ 282 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPAL---PS 282 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCcccccceeeccCCchhh-hhhc---hh
Confidence 4666665 389999999999999875 2589999999999999998778999999999999984 4443 36
Q ss_pred CCCEEEccCCcCccCchhhhhccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcc
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNL 160 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~ 160 (574)
+|+.|++++|+++ .+|....++. ++++|.++.+|. ++.+|+.|++++|++++++ .+ ..+|++|++++|+
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~L~Ls~N~L~~LP-~l--p~~Lq~LdLS~N~ 353 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTSLP-TL--PSGLQELSVSDNQ 353 (788)
T ss_pred hcCEEECcCCccc-cccccccccceeECCCCccccCCC-----CcccccccccccCcccccc-cc--ccccceEecCCCc
Confidence 7889999999998 5565444444 888999998876 2223889999999998543 32 2589999999999
Q ss_pred cccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccc
Q 041121 161 LNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFS 240 (574)
Q Consensus 161 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~ 240 (574)
|+. +|.. ..+|+.|++++|+|+.++. . ..+|+.|++++|++++ +|..+.+|+.|++++|.+.
T Consensus 354 Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~---------l----~~~L~~LdLs~N~Lt~-LP~l~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 354 LAS-LPTL---PSELYKLWAYNNRLTSLPA---------L----PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT 415 (788)
T ss_pred cCC-CCCC---CcccceehhhccccccCcc---------c----ccccceEEecCCcccC-CCCcccCCCEEEccCCcCC
Confidence 984 4443 3578889999999885542 1 2468999999999996 5555789999999999999
Q ss_pred ccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccc
Q 041121 241 RSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298 (574)
Q Consensus 241 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 298 (574)
+++.. ..+|+.|++++|+|+ .+|..+..+++|+.|++++|++++..+..+..+
T Consensus 416 sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 416 SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 76542 357899999999998 678889999999999999999998777665443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.8e-19 Score=190.49 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
+|+.|++++|.++.++... .++|++|++++|.++. +|..+. ++|+.|++++|.++
T Consensus 305 sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 305 GITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred hHHHHHhcCCccccCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 3444444444444332211 1455555555555553 333222 45555566555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.9e-18 Score=184.18 Aligned_cols=227 Identities=23% Similarity=0.310 Sum_probs=144.6
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
+..+|+++++.++.+|. .+. +.|+.|++++|+++.+ ..+..+|++|++++|+++ .+|..+. ++|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~---~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCc---ccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 56788888888888865 332 5788888888888877 334468888888888887 4455443 4688888888
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.+. .+|..+. .. |+.|++++|+++.++..+. ++|++|++++|+++. +|..+.
T Consensus 251 N~L~-~LP~~l~---------------------s~-L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp- 303 (754)
T PRK15370 251 NRIT-ELPERLP---------------------SA-LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLP- 303 (754)
T ss_pred CccC-cCChhHh---------------------CC-CCEEECcCCccCccccccC--CCCcEEECCCCcccc-Ccccch-
Confidence 8877 4554322 12 7777777777774333232 467777777777763 343332
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
+.|+.|++++|.++.++.. ..++|+.|++++|.+++.....+++|+.|++++|.|..++. .+ .+
T Consensus 304 -~sL~~L~Ls~N~Lt~LP~~------------l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~-~l--p~ 367 (754)
T PRK15370 304 -SGITHLNVQSNSLTALPET------------LPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPE-TL--PP 367 (754)
T ss_pred -hhHHHHHhcCCccccCCcc------------ccccceeccccCCccccCChhhcCcccEEECCCCCCCcCCh-hh--cC
Confidence 3567777777776643321 12456777777777766443345677777777777765433 22 25
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDS 294 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 294 (574)
+|++|++++|.++. +|..+. ..|+.|++++|++. .+|..
T Consensus 368 ~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~s 406 (754)
T PRK15370 368 TITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPES 406 (754)
T ss_pred CcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchh
Confidence 67777777777773 344333 25777777777776 44443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=1.5e-18 Score=172.10 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=67.0
Q ss_pred CcccEEEccCCcCCCCC----cHhhhhcCCCCEEeCCCCcCcccCCcccc-----CCCCCCEEeCCCCcccc----cCCC
Q 041121 428 GLIKSLELSSNKLNGAV----PEEIMDLVGLVALNLSRNHLTGQNSPKIG-----QLKSLDFLDLSRNQLVG----GIPS 494 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~----~~~~ 494 (574)
++|++|++++|.+++.. ...+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. ....
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 45677888888776332 23445667788888888877743222221 23678888888887752 2233
Q ss_pred CccCCCCCCEEeccCCcCccc----CCCc-chh-cccCcccccCCCC
Q 041121 495 SLSPLSVLSVMDLSYNNLSGK----IPTG-TQL-QSFNGSVYAGNPE 535 (574)
Q Consensus 495 ~l~~l~~L~~L~Ls~N~l~~~----~p~~-~~~-~~l~~~~l~~Np~ 535 (574)
.+..+++|+.+++++|.++.. +... ... ..++.+++.+|||
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 455567888888888888722 1111 122 5667777777775
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.3e-17 Score=165.17 Aligned_cols=165 Identities=24% Similarity=0.223 Sum_probs=78.7
Q ss_pred hhhcCCCCCcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCC----------CCcCCcccEEEccCCcCCCC
Q 041121 6 MRSLRLHSLRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL----------SNISSNFVSIDLSFNQLQGS 73 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~L~~L~Ls~n~i~~~ 73 (574)
..+..+++|++|+++++.++.. ..+...+...+.+++|+++++.+... ..-.++|++|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 3444555566666666665443 22223445555566666666655420 01124555555555555443
Q ss_pred CCccccCCCC---CCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc-cccCcEEEccCCccccc----CCC-
Q 041121 74 IPDSSQHMVY---LEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL-KNSLESLHLEVNHFTGP----IPD- 144 (574)
Q Consensus 74 ~~~~~~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l-~~~L~~L~L~~n~l~~~----~~~- 144 (574)
.+..+..+.+ |++|++++|++.......+.. .+..+ ++ |+.|++++|.+++. ...
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~---------------~l~~~~~~-L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK---------------GLKDLPPA-LEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHH---------------HHHhCCCC-ceEEEcCCCcCCchHHHHHHHH
Confidence 3333333333 555555555554211111111 22333 34 66666666665521 111
Q ss_pred CCCCCCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCC
Q 041121 145 LGGFSSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 44455566666666655521 2233444456666666666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-18 Score=144.04 Aligned_cols=155 Identities=30% Similarity=0.471 Sum_probs=107.2
Q ss_pred CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 249 SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+..++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ ..|..++.+++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl--------------------------- 81 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL--------------------------- 81 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh---------------------------
Confidence 5677788888888888 56666788888888888888887 666677777766
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc-cCCccccccccCccccCCCCccccccccccCCCcccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYS 407 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 407 (574)
+.++++-|++. ..|..|+.+|.|+.|||++|++.. ..|..|-.++.
T Consensus 82 ----r~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t---------------------------- 128 (264)
T KOG0617|consen 82 ----RILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT---------------------------- 128 (264)
T ss_pred ----hheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHH----------------------------
Confidence 55666655555 566667777777777777776643 23444433333
Q ss_pred ccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCc
Q 041121 408 FQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQ 487 (574)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 487 (574)
|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+
T Consensus 129 ----------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 129 ----------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ----------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 356667777776 66777777777777777777765 566667777777777777777
Q ss_pred cc
Q 041121 488 LV 489 (574)
Q Consensus 488 i~ 489 (574)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 76
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=4.1e-17 Score=135.26 Aligned_cols=131 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
++.+++.|.||+|.++.+|. .+..+.+|++|++++|+|+ .+|..++.+++|++|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp---nia~l~nlevln~~nnqie---------------------~lp~~issl~klr~lnv 86 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP---NIAELKNLEVLNLSNNQIE---------------------ELPTSISSLPKLRILNV 86 (264)
T ss_pred chhhhhhhhcccCceeecCC---cHHHhhhhhhhhcccchhh---------------------hcChhhhhchhhhheec
Confidence 34445555555555555533 3455555555555554444 45556666666666666
Q ss_pred cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccc-cCCC-CCCCCCCCEEEccCcccccccch
Q 041121 90 MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG-PIPD-LGGFSSMKRLYLSDNLLNGTINK 167 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~-~~~~-l~~l~~L~~L~L~~n~i~~~~~~ 167 (574)
+-|++. ..|. .|+.+|. |+.||+++|++.. ..|+ |..++.|+.|++++|.+. ++|.
T Consensus 87 gmnrl~-~lpr-------------------gfgs~p~-levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~ 144 (264)
T KOG0617|consen 87 GMNRLN-ILPR-------------------GFGSFPA-LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP 144 (264)
T ss_pred chhhhh-cCcc-------------------ccCCCch-hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh
Confidence 666655 4444 4455555 6666666666654 3344 666666666666666665 5566
Q ss_pred hhhccCCCCEEEccCCCCC
Q 041121 168 SIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 168 ~~~~l~~L~~L~Ls~N~l~ 186 (574)
.++++++|+.|.+.+|.+-
T Consensus 145 dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhhhhcceeEEeeccCchh
Confidence 6666666666666666554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=2.6e-12 Score=136.97 Aligned_cols=118 Identities=36% Similarity=0.638 Sum_probs=107.6
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCcch--hcccCcccccCCCCCCCCCCCCCCC
Q 041121 509 YNNLSGKIPTGTQ--LQSFNGSVYAGNPELCGLPLPNKCR 546 (574)
Q Consensus 509 ~N~l~~~~p~~~~--~~~l~~~~l~~Np~~c~~~l~~~c~ 546 (574)
+|+++|.+|.... ...+..+++.+|+.+|++|-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999998632 2345677899999999987666774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.3e-13 Score=133.53 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=117.4
Q ss_pred EEcCCCccccccccccc-CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccccc
Q 041121 232 LNLSKNRFSRSISLCSI-SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310 (574)
Q Consensus 232 L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~ 310 (574)
|.|++-++...+...+. .+.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~l--------- 123 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEAL--------- 123 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHH---------
Confidence 44444444443332222 2233345677777776 66776777777777777777777 666677777777
Q ss_pred ccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcc
Q 041121 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390 (574)
Q Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 390 (574)
++++|+.|+++ ..|..+|.++ |+.|-+++|+++ ..|..++....|
T Consensus 124 ----------------------t~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl---------- 168 (722)
T KOG0532|consen 124 ----------------------TFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTL---------- 168 (722)
T ss_pred ----------------------HHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhH----------
Confidence 66777777776 4666777776 888888888887 666665544444
Q ss_pred ccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCc
Q 041121 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP 470 (574)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 470 (574)
..||.+.|.+. .+|..+.++.+|+.|+++.|.+. ..|.
T Consensus 169 ----------------------------------------~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 169 ----------------------------------------AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ----------------------------------------HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 55555566554 55555556666666666666655 2333
Q ss_pred cccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 471 KIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 471 ~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+..+ .|..||+++|+|. .+|-.|..|+.|++|-|.+|.++
T Consensus 207 El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 207 ELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 33333 3556666666665 45555666666666666666665
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=5.3e-13 Score=123.75 Aligned_cols=251 Identities=16% Similarity=0.136 Sum_probs=130.0
Q ss_pred hhhcCCCCCcEEECCCCCCCCC-C-chhhhcCCCCCCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCC
Q 041121 6 MRSLRLHSLRYLNLEENNLANC-S-DWFQVIGKLHSLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMV 82 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~ 82 (574)
+.+..+..++.|+||+|.+..- . .+...+.+.++|+..++++--.... ..+...|. ....++..+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------~l~~aL~~~~ 92 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------MLSKALLGCP 92 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------HHHHHHhcCC
Confidence 4456677888888888887766 2 2334567777888887776433222 00000000 0112233444
Q ss_pred CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccc----c---------CCC-CCCC
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG----P---------IPD-LGGF 148 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~----~---------~~~-l~~l 148 (574)
+|++||||+|.+....+..|..+ +..+.. |++|.|.+|.+.- . ... .+.-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~l---------------l~s~~~-L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEEL---------------LSSCTD-LEELYLNNCGLGPEAGGRLGRALFELAVNKKAASK 156 (382)
T ss_pred ceeEeeccccccCccchHHHHHH---------------HHhccC-HHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCC
Confidence 55555555555544444444332 222333 4444444444321 0 011 3334
Q ss_pred CCCCEEEccCccccc----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC---
Q 041121 149 SSMKRLYLSDNLLNG----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP--- 221 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~--- 221 (574)
++|+++...+|++.. .+...|...+.|+.+.++.|.|..-.. .+-...+.+|++|+.||+.+|.++..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----TALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-----HHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 555555555555532 123344455555555555555432111 01111144555555555555555421
Q ss_pred ----CCCCCCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCcccc
Q 041121 222 ----IPPLPSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 222 ----~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
.-..+++|+++++.+|.+..-....+ ...|+|+.|.+.+|.|+.. ........+.|+.|+|++|.+.
T Consensus 232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 11113577788888887766554332 2568889999999888732 2233455788999999999883
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=5.7e-12 Score=109.90 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=47.8
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcC---CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNIS---SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
+.+..++++|+|++|+|+.+.++. .+|+.|++++|.|+.. +.+..+++|++|++++|+|+...+ .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l-------- 83 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GL-------- 83 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HH--------
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-ch--------
Confidence 345556677777777777664332 4677777777777743 247778889999999998884322 11
Q ss_pred CccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCccccccc---chhhhccCCCCEEEccC
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTI---NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~ 182 (574)
...+|+ |++|++++|++.....- +..+++|++|++.+|.+.... ...+..+|+|+.||-..
T Consensus 84 ----------~~~lp~-L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 84 ----------DKNLPN-LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ----------HHH-TT---EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ----------HHhCCc-CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 124677 89999999988764443 778899999999999887432 23567889999887654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.9e-11 Score=106.61 Aligned_cols=124 Identities=23% Similarity=0.247 Sum_probs=40.1
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcC-CCCCCcEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccc-cCCCCC
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIG-KLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSS-QHMVYL 84 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 84 (574)
.+..++++|+|++|.|+.+.. ++ .+.+|+.|++++|+|+.+.++. +.|++|++++|+|+.. ...+ ..+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~----L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN----LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNL 90 (175)
T ss_dssp --------------------S------TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccccc----hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcc-ccchHHhCCcC
Confidence 344456777777777776643 33 4667777777777777764443 6777777777777643 3333 356777
Q ss_pred CEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC----CCCCCCCCEEEc
Q 041121 85 EHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD----LGGFSSMKRLYL 156 (574)
Q Consensus 85 ~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~L 156 (574)
++|++++|+|.... .+. .+..+++ |+.|++.+|.++..... +..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~--~l~----------------~L~~l~~-L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLN--ELE----------------PLSSLPK-LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCC--CCG----------------GGGG-TT---EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChH--HhH----------------HHHcCCC-cceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777765321 111 3445666 77777777777644321 456677777764
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.4e-12 Score=120.96 Aligned_cols=207 Identities=21% Similarity=0.179 Sum_probs=112.6
Q ss_pred CCCCCCcEEEccCCCCCCCC-----CcCCcccEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCccCchhhhhcccC
Q 041121 35 GKLHSLKTLTSHSCYLRPLS-----NISSNFVSIDLSFNQLQG--SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLN 107 (574)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~-----~~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 107 (574)
+++++|+.+.|.++.+.... ..+++++.||||+|-+.. .+......+|+|+.|+|+.|++..-....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~------ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN------ 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc------
Confidence 34556666666665554432 223555566666655442 12233456777777777777765211110
Q ss_pred CCCCccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCC
Q 041121 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 108 L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
.-..++. |+.|.++.|.++..... +..+|+|+.|++.+|....+......-++.|+.|+|++|++
T Consensus 192 ------------~~~~l~~-lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 192 ------------TTLLLSH-LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ------------chhhhhh-hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 1112444 77777777777643222 55677777788777754334445555677777778887777
Q ss_pred CcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccc------ccCCCCccEEECC
Q 041121 186 TDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC------SISGSKLTYIDLS 259 (574)
Q Consensus 186 ~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~------~~~~~~L~~L~L~ 259 (574)
.+.+..... +.++.|+.|.++.+.+. ++.... ....++|++|++.
T Consensus 259 i~~~~~~~~--------~~l~~L~~Lnls~tgi~---------------------si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 259 IDFDQGYKV--------GTLPGLNQLNLSSTGIA---------------------SIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ccccccccc--------ccccchhhhhccccCcc---------------------hhcCCCccchhhhcccccceeeecc
Confidence 655433222 23333344444444433 322111 1245777777777
Q ss_pred CCCCCCC-CCcchhcCCCCcEEEccCccccc
Q 041121 260 SNLLSGK-LPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 260 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
.|+|... ....+..+++|+.|.+..|.++.
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccccc
Confidence 7777521 11234455666777777777653
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=2e-12 Score=127.10 Aligned_cols=175 Identities=30% Similarity=0.468 Sum_probs=138.2
Q ss_pred cCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC
Q 041121 273 MFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ 352 (574)
Q Consensus 273 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~ 352 (574)
++.--...|++.|++. ++|..+..+..| ..+.|..|.+. .+|.++++
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~L-------------------------------e~liLy~n~~r-~ip~~i~~ 119 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSL-------------------------------ESLILYHNCIR-TIPEAICN 119 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHH-------------------------------HHHHHHhccce-ecchhhhh
Confidence 4445567778888877 667666666666 55666777766 46667777
Q ss_pred CCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccE
Q 041121 353 FAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS 432 (574)
Q Consensus 353 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 432 (574)
+..|+.+||+.|+++ ..|..+..++ |+.
T Consensus 120 L~~lt~l~ls~NqlS-~lp~~lC~lp---------------------------------------------------Lkv 147 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLS-HLPDGLCDLP---------------------------------------------------LKV 147 (722)
T ss_pred hhHHHHhhhccchhh-cCChhhhcCc---------------------------------------------------cee
Confidence 778888888888877 5554433222 689
Q ss_pred EEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 433 LELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 433 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
|-+++|+++ .+|..++.+..|..|+.+.|.+. ..|..++++.+|+.|.+..|++.. .|..+..+ .|.+||+|.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCce
Confidence 999999998 88888999999999999999998 567788999999999999999995 45555655 599999999999
Q ss_pred cccCCCc-chhcccCcccccCCCCCC
Q 041121 513 SGKIPTG-TQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 513 ~~~~p~~-~~~~~l~~~~l~~Np~~c 537 (574)
+ .||.. ..+..+..+.+..||...
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC
Confidence 9 88876 578999999999999653
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=6.1e-12 Score=116.79 Aligned_cols=222 Identities=18% Similarity=0.163 Sum_probs=136.1
Q ss_pred hhhhhhhcCCCCCcEEECCCCCCCCC----Cc----hhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEc
Q 041121 2 RKLLMRSLRLHSLRYLNLEENNLANC----SD----WFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDL 65 (574)
Q Consensus 2 ~~l~~~l~~l~~L~~L~Ls~n~i~~~----~~----~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~L 65 (574)
+.+-+.+.+.++|++-++|.--.... |. +.+++-.+++|++|+||+|.+..- ..-+..|++|.|
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 44556677777777777775432222 11 234566677777777777766543 111357777777
Q ss_pred cCCcCCCC-------------CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 66 SFNQLQGS-------------IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 66 s~n~i~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
.+|.+.-. ..+....-++|+++..++|++.......+.. .|...+. |+.+.
T Consensus 128 ~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~---------------~~~~~~~-leevr 191 (382)
T KOG1909|consen 128 NNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE---------------AFQSHPT-LEEVR 191 (382)
T ss_pred hcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH---------------HHHhccc-cceEE
Confidence 77776522 1223345678888888888887444333332 5666777 88888
Q ss_pred ccCCcccccCC----C-CCCCCCCCEEEccCccccc----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 133 LEVNHFTGPIP----D-LGGFSSMKRLYLSDNLLNG----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 133 L~~n~l~~~~~----~-l~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
+.+|.|..... . |..++.|++|||.+|-++. .+...++.++.|+.|+++++.++.-....+...+..
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~---- 267 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE---- 267 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc----
Confidence 88887763211 2 6777888888888887753 245566677778888888877765443333322211
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc----ccccCCCCccEEECCCCCCC
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS----LCSISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~~~~L~~L~L~~n~l~ 264 (574)
. .+.|+.+.+.+|.|+.-.. .+....+.|.+|++++|.+.
T Consensus 268 ~---------------------~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 268 S---------------------APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred c---------------------CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1 3556666666666654222 22334677888888888873
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.6e-11 Score=111.40 Aligned_cols=88 Identities=27% Similarity=0.265 Sum_probs=59.1
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC-CCCccCCCCCCEE
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI-PSSLSPLSVLSVM 505 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~l~~l~~L~~L 505 (574)
+++|+.||||+|.++ .+.++-..+-+.++|.|++|.|... ..++.+-+|..||+++|+|.... -..++++|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 455677777777776 5555666677777777777777522 24556667777777777777432 2356777777777
Q ss_pred eccCCcCcccCCC
Q 041121 506 DLSYNNLSGKIPT 518 (574)
Q Consensus 506 ~Ls~N~l~~~~p~ 518 (574)
.|.+|++. .+|+
T Consensus 405 ~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLA-GSVD 416 (490)
T ss_pred hhcCCCcc-ccch
Confidence 77777777 4443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.9e-11 Score=110.99 Aligned_cols=205 Identities=20% Similarity=0.142 Sum_probs=131.2
Q ss_pred hhhcCCCCCcEEECCCCC--CCC--C-Cch-hhhcCCCCCCcEEEccCCCCCCC---CCcCCcccEEEccCCcCCCC---
Q 041121 6 MRSLRLHSLRYLNLEENN--LAN--C-SDW-FQVIGKLHSLKTLTSHSCYLRPL---SNISSNFVSIDLSFNQLQGS--- 73 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~--i~~--~-~~~-~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~L~~L~Ls~n~i~~~--- 73 (574)
..+.-+.+|++|..++.. +.. + +.. .-.+.-+++|..+.++.|.-..+ ....|.|+++...+..++..
T Consensus 176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred HHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccc
Confidence 344556778888877642 111 1 110 00345567788888888764444 44457888888876655421
Q ss_pred CCcc--------------------ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEc
Q 041121 74 IPDS--------------------SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHL 133 (574)
Q Consensus 74 ~~~~--------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L 133 (574)
.|.. +....-|+++||++|.|+ .+.+ ++.-.|+ ++.|++
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDE-------------------SvKL~Pk-ir~L~l 314 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDE-------------------SVKLAPK-LRRLIL 314 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhh-------------------hhhhccc-eeEEec
Confidence 2211 122345677777777666 2222 4555677 888888
Q ss_pred cCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEec
Q 041121 134 EVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDI 213 (574)
Q Consensus 134 ~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l 213 (574)
++|.+..+. .++.+++|++|||++|.++ .+..+=.++-+.++|.|++|.|.+++. ...+-+|..||+
T Consensus 315 S~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSG-----------L~KLYSLvnLDl 381 (490)
T KOG1259|consen 315 SQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSG-----------LRKLYSLVNLDL 381 (490)
T ss_pred cccceeeeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhh-----------hHhhhhheeccc
Confidence 888888433 3778888888888888887 334444567788888888888876543 456667888888
Q ss_pred cCCcccCCCC----CCCCCCcEEEcCCCccccccc
Q 041121 214 SSNHFEGPIP----PLPSNSSFLNLSKNRFSRSIS 244 (574)
Q Consensus 214 ~~n~l~~~~~----~~~~~L~~L~L~~n~i~~~~~ 244 (574)
++|++..... ..++.|+.+.|.+|.+.++..
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888775321 127888888899998876554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.5e-10 Score=117.99 Aligned_cols=80 Identities=38% Similarity=0.492 Sum_probs=41.7
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++++++|++++|+++.+.. +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 355555555433 344445555555555555555542 23444555555555555555553332 55555555555555
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|.++
T Consensus 287 n~~~ 290 (394)
T COG4886 287 NSLS 290 (394)
T ss_pred cccc
Confidence 5554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.6e-10 Score=116.30 Aligned_cols=165 Identities=28% Similarity=0.438 Sum_probs=88.4
Q ss_pred EEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC---CcCC-cccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 16 YLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS---NISS-NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 16 ~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
.++++.+.+..... .+..+..++.|++.+|.++.+. .... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch---hhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46666666633322 3455577777777777777762 2232 6777777777777 4455677777888888887
Q ss_pred CcCccCchhhh---hccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccc
Q 041121 92 NELEGGIPKFF---GNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 92 n~l~~~~~~~~---~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
|++. .+|... ..+. ++++|.+..+|. ....... |++|.+++|++...+..+..+.++..+.+.+|++. ..+
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~-L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISDLPP-EIELLSA-LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccccCch-hhhhhhh-hhhhhhcCCcceecchhhhhcccccccccCCceee-ecc
Confidence 7777 333321 1111 344444444443 2222222 55555555543323333444555555555555554 223
Q ss_pred hhhhccCCCCEEEccCCCCCcc
Q 041121 167 KSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
..+..++.+++|++++|.++++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred chhccccccceecccccccccc
Confidence 4444555555555555555543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-11 Score=116.05 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=132.5
Q ss_pred hhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
-+.=+++..|+.+.|.+..+...+.- +....|++++.|||++|-+..+ ..-.++|+.|+++.|++........
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 33346778888888888887776310 2567889999999999887776 2334889999999998864332222
Q ss_pred -cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEc
Q 041121 79 -QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYL 156 (574)
Q Consensus 79 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L 156 (574)
..+++|+.|.|+.|.++...... ....+|. |+.|+|..|........ ...+..|++|+|
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~------------------~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQW------------------ILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHH------------------HHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccc
Confidence 35788889999988887322221 3444666 77777777742222222 555667777777
Q ss_pred cCccccccc-chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccC--CCCCC--CCCCcE
Q 041121 157 SDNLLNGTI-NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG--PIPPL--PSNSSF 231 (574)
Q Consensus 157 ~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~--~~~~~--~~~L~~ 231 (574)
++|.+.... ......++.|..|+++.+.+.++..-... .. . ....+++|+.|++..|++.. .+-.. +.+|+.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-s~-~-kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~ 330 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE-SL-D-KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKH 330 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCcc-ch-h-hhcccccceeeecccCccccccccchhhccchhhh
Confidence 777664221 23455677777777777777655321110 00 0 02455677777777777742 11111 566777
Q ss_pred EEcCCCcccc
Q 041121 232 LNLSKNRFSR 241 (574)
Q Consensus 232 L~L~~n~i~~ 241 (574)
|.+..|.+..
T Consensus 331 l~~~~n~ln~ 340 (505)
T KOG3207|consen 331 LRITLNYLNK 340 (505)
T ss_pred hhcccccccc
Confidence 7777777654
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=1.9e-10 Score=82.52 Aligned_cols=61 Identities=41% Similarity=0.497 Sum_probs=43.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 452 VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
++|++|++++|+++.+.++.|.++++|++|++++|+++.+.++.|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777766666777777777777777777766667777777777777777764
No 37
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=8.5e-10 Score=117.83 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=75.9
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCC-CCCCE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPL-SVLSV 504 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l-~~L~~ 504 (574)
.+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+... .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 34446888899998888888888889999999999999988888888889999999999999988888877653 45678
Q ss_pred EeccCCcCcccCCC
Q 041121 505 MDLSYNNLSGKIPT 518 (574)
Q Consensus 505 L~Ls~N~l~~~~p~ 518 (574)
+++++|...+..|.
T Consensus 520 l~~~~N~~lc~~p~ 533 (623)
T PLN03150 520 FNFTDNAGLCGIPG 533 (623)
T ss_pred EEecCCccccCCCC
Confidence 88888886655553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=3.3e-10 Score=81.20 Aligned_cols=61 Identities=39% Similarity=0.553 Sum_probs=57.1
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
|+|++|++++|.++...++.|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999999999999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.3e-10 Score=116.91 Aligned_cols=237 Identities=26% Similarity=0.262 Sum_probs=104.8
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCC-c--CCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSN-I--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
+..++.+.+..|.|..+.. .+..+.+|.+|++.+|+|..+.. + .++|++|++++|.|+.+. .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~---~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN---HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhhhhc---ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444444455555554322 34555555555555555555433 1 244555555555554321 23344445555
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccc
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
++++|.|+. +. .+..++. |+.+++++|++..+... ...+.+++.+.+.+|.+..+
T Consensus 146 ~l~~N~i~~-~~--------------------~~~~l~~-L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-- 201 (414)
T KOG0531|consen 146 NLSGNLISD-IS--------------------GLESLKS-LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-- 201 (414)
T ss_pred eeccCcchh-cc--------------------CCccchh-hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--
Confidence 555554441 11 2222444 55555555555533332 34455555555555555422
Q ss_pred hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC--CCCeEeccCCcccCC--CCCCCCCCcEEEcCCCccccc
Q 041121 167 KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT--SNPGIDISSNHFEGP--IPPLPSNSSFLNLSKNRFSRS 242 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~--~L~~L~l~~n~l~~~--~~~~~~~L~~L~L~~n~i~~~ 242 (574)
..+..+..+..+++..|.++.+.... ... .|+.+++++|.+... .......+..+++..|++...
T Consensus 202 ~~~~~~~~l~~~~l~~n~i~~~~~l~-----------~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 202 EGLDLLKKLVLLSLLDNKISKLEGLN-----------ELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cchHHHHHHHHhhcccccceeccCcc-----------cchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 22333333444455555544332211 011 245555555555532 122245555555555555543
Q ss_pred ccccccCCCCccEEECCCCCCCCC---CCc-chhcCCCCcEEEccCccccc
Q 041121 243 ISLCSISGSKLTYIDLSSNLLSGK---LPD-CWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 243 ~~~~~~~~~~L~~L~L~~n~l~~~---~~~-~~~~l~~L~~L~L~~N~l~~ 289 (574)
... ...+.+..+....|.+... ... .....+.++.+.+..|.+..
T Consensus 271 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 271 EGL--ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccc--cccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 321 1234444444444444311 111 13344556666666665543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.9e-10 Score=116.07 Aligned_cols=125 Identities=30% Similarity=0.288 Sum_probs=75.1
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.+.+..|.+......+..+++|+.|++.+|+|..+ ...+..+++|++|++++|.|+.+... ..
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l-----------~~--- 138 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL-----------ST--- 138 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch-----------hh---
Confidence 6666677777775344477777888888888887633 22266677777777777777755421 11
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEEccCcc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~ 286 (574)
+..|+.|++++|.|..+.... .+..|+.+++++|.++...+ . ...+.+++.+++++|.
T Consensus 139 ------------------l~~L~~L~l~~N~i~~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 139 ------------------LTLLKELNLSGNLISDISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ------------------ccchhhheeccCcchhccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 233455555555555443322 25666666666666664333 1 3555666666666666
Q ss_pred cc
Q 041121 287 FS 288 (574)
Q Consensus 287 l~ 288 (574)
+.
T Consensus 198 i~ 199 (414)
T KOG0531|consen 198 IR 199 (414)
T ss_pred hh
Confidence 64
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=1.6e-09 Score=109.79 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=30.2
Q ss_pred cccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCC
Q 041121 121 SGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 121 ~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+..+++ |++|||++|++..++.. -.++. |..|.+++|.++.. ..+.++.+|+.||+++|-|.
T Consensus 205 Lr~l~~-LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 205 LRRLPK-LKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred HHhccc-ccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 344555 55555555555533322 22322 55555555555422 33445555555555555544
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=4.2e-09 Score=106.88 Aligned_cols=112 Identities=32% Similarity=0.324 Sum_probs=88.9
Q ss_pred ccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 422 EYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 422 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
..++-++.|+.|+|++|+++.. +.+..++.|++|||++|.++.+..-.-.++. |+.|.+++|.++.. ..+.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 3456678899999999999743 3789999999999999999854433334444 99999999999844 34788999
Q ss_pred CCEEeccCCcCcccCC--CcchhcccCcccccCCCCCCC
Q 041121 502 LSVMDLSYNNLSGKIP--TGTQLQSFNGSVYAGNPELCG 538 (574)
Q Consensus 502 L~~L~Ls~N~l~~~~p--~~~~~~~l~~~~l~~Np~~c~ 538 (574)
|+.||+++|-|.+.-. .-..+..+..+.+.|||.-|.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999999999985433 224578888999999998774
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.43 E-value=3e-08 Score=89.29 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=131.8
Q ss_pred hhcCCCCCcEEECCCCCCCCC-Cc-hhhhcCCCCCCcEEEccCCCCCCC--------------CCcCCcccEEEccCCcC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SD-WFQVIGKLHSLKTLTSHSCYLRPL--------------SNISSNFVSIDLSFNQL 70 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~-~~~~~~~l~~L~~L~l~~n~l~~~--------------~~~~~~L~~L~Ls~n~i 70 (574)
-+.-+..++.+|||+|-|..- .. +...+.+-++|+..+++.--.... .--+|+|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344577888899999988776 33 224566678888888876543332 01126777777777776
Q ss_pred CCCCCccc----cCCCCCCEEEccCCcCccCchhhhhc-ccCCCCCccccccccccccccccCcEEEccCCcccccCCC-
Q 041121 71 QGSIPDSS----QHMVYLEHLSLMFNELEGGIPKFFGN-MLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD- 144 (574)
Q Consensus 71 ~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~- 144 (574)
....|..+ ++-..|++|.+++|.+....-..+++ +..|..|+ -...-|. |+......|++..-...
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK-------Kaa~kp~-Le~vicgrNRlengs~~~ 176 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK-------KAADKPK-LEVVICGRNRLENGSKEL 176 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh-------hhccCCC-ceEEEeccchhccCcHHH
Confidence 64444333 45566777777777554222122221 11111111 1122344 77777777766532211
Q ss_pred ----CCCCCCCCEEEccCcccccc-----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccC
Q 041121 145 ----LGGFSSMKRLYLSDNLLNGT-----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISS 215 (574)
Q Consensus 145 ----l~~l~~L~~L~L~~n~i~~~-----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~ 215 (574)
+..-..|+++.+..|.|.-. ....+..+++|+.||+.+|.++......+...++.|
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W--------------- 241 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW--------------- 241 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc---------------
Confidence 33335677777777766522 112234466677777777766654444443344443
Q ss_pred CcccCCCCCCCCCCcEEEcCCCccccccccc----c--cCCCCccEEECCCCCCCCCC------Ccc-hhcCCCCcEEEc
Q 041121 216 NHFEGPIPPLPSNSSFLNLSKNRFSRSISLC----S--ISGSKLTYIDLSSNLLSGKL------PDC-WWMFDSLVILDL 282 (574)
Q Consensus 216 n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~--~~~~~L~~L~L~~n~l~~~~------~~~-~~~l~~L~~L~L 282 (574)
+.|++|.+..|.++.-...+ | -..|+|..|-..+|.+.+.. +.. -..++-|..|.+
T Consensus 242 -----------~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 242 -----------NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred -----------chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 33455555555444322211 1 13466666766666654321 111 124566677777
Q ss_pred cCcccc
Q 041121 283 GNNSFS 288 (574)
Q Consensus 283 ~~N~l~ 288 (574)
.+|++.
T Consensus 311 ngNr~~ 316 (388)
T COG5238 311 NGNRIK 316 (388)
T ss_pred ccCcch
Confidence 777776
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.42 E-value=4e-07 Score=99.77 Aligned_cols=250 Identities=18% Similarity=0.155 Sum_probs=122.2
Q ss_pred CCCcEEEccCCCCCCCCC--cCCcccEEEccCCc--CCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CC
Q 041121 38 HSLKTLTSHSCYLRPLSN--ISSNFVSIDLSFNQ--LQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NL 108 (574)
Q Consensus 38 ~~L~~L~l~~n~l~~~~~--~~~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L 108 (574)
...|.+.+.+|.+..+.. ..+.|++|-+..|. +.......|..+|.|++|||++|.--+.+|..++.+- +|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 445555555555544411 12456666666664 3433344455666666666665544445555555432 34
Q ss_pred CCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCccc--ccccchhhhccCCCCEEEccCCCC
Q 041121 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLL--NGTINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 109 ~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
+...+..+|. .+.++.. |.+|++..+.....++. ...+++|++|.+..... ....-..+..+..|+.+.......
T Consensus 603 ~~t~I~~LP~-~l~~Lk~-L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 603 SDTGISHLPS-GLGNLKK-LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred cCCCccccch-HHHHHHh-hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 4444444555 6667776 88888887765545555 56688888888765542 122233344555555555533222
Q ss_pred CcccCccccccCCchhhcCCCCC----CeEeccCCcccCCCCCC--CCCCcEEEcCCCccccccccccc-----C-CCCc
Q 041121 186 TDLANIQIKGKLPDLSSRFGTSN----PGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSI-----S-GSKL 253 (574)
Q Consensus 186 ~~l~~~~~~~~lp~~~~~~~~~L----~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~-----~-~~~L 253 (574)
..+.. +..+..| +.+.+.++.....+... +.+|+.|.+.++.+......... . ++++
T Consensus 681 ~~~e~-----------l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 681 LLLED-----------LLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL 749 (889)
T ss_pred HhHhh-----------hhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence 00000 0111111 12222222222222221 67777777777776543322211 0 2233
Q ss_pred cEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 254 TYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 254 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
..+...++... ..+.+....++|+.|.+..+...+.+......+..+
T Consensus 750 ~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 750 SKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred HHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 33333333222 233344456788888887776654444444433333
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.36 E-value=2.8e-07 Score=100.95 Aligned_cols=128 Identities=23% Similarity=0.228 Sum_probs=85.6
Q ss_pred CCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCc--ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEc
Q 041121 206 TSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNR--FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~--i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (574)
...+...+-+|.+....-.. .+.|+.|-+..|. +..+....|..++.|+.||+++|.=-+..|..++++-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34455555555554332222 3467777777775 55555555667788888888877654577888888888888888
Q ss_pred cCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 283 GNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 283 ~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
++..++ .+|..+..+..| .+|++..+......+.....+.+|++|.+-
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L-------------------------------~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKL-------------------------------IYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cCCCcc-ccchHHHHHHhh-------------------------------heeccccccccccccchhhhcccccEEEee
Confidence 888887 777777777777 666666666555556666667778877777
Q ss_pred CCc
Q 041121 363 LNN 365 (574)
Q Consensus 363 ~n~ 365 (574)
...
T Consensus 651 ~s~ 653 (889)
T KOG4658|consen 651 RSA 653 (889)
T ss_pred ccc
Confidence 654
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.1e-08 Score=79.85 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=81.9
Q ss_pred ccEEEccCCcCCCCCcHhhh-hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 430 IKSLELSSNKLNGAVPEEIM-DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
|+..+|++|.+. ..|..|. ..+.++.|+|++|.|+ ..|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 577889999988 5555554 4568899999999998 56666888999999999999998 677777778889999999
Q ss_pred CCcCcccCCCcchhcccC-cccccCCCCCCCCCC
Q 041121 509 YNNLSGKIPTGTQLQSFN-GSVYAGNPELCGLPL 541 (574)
Q Consensus 509 ~N~l~~~~p~~~~~~~l~-~~~l~~Np~~c~~~l 541 (574)
+|.+. .||....+++.. .+.+..+||--+|+.
T Consensus 132 ~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred CCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99987 777664443333 344667787766554
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=8.9e-07 Score=81.09 Aligned_cols=197 Identities=19% Similarity=0.128 Sum_probs=104.3
Q ss_pred CcEEEccCCCCCCC------CCcCCcccEEEccCCcCCC--CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCC
Q 041121 40 LKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQG--SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDN 111 (574)
Q Consensus 40 L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n 111 (574)
+..|-+.++.|... ....+.++++||.+|.|+. .+...+.++|.|++|+|+.|.+...+-.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~----------- 115 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS----------- 115 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-----------
Confidence 33455556655554 2223677888888888763 3445567888999999998888733211
Q ss_pred ccccccccccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCccccc--ccchhhhcc-CCCCEEEccCCCCC
Q 041121 112 KLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNLLNG--TINKSIGQI-FKLEITCLSQNSLT 186 (574)
Q Consensus 112 ~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~i~~--~~~~~~~~l-~~L~~L~Ls~N~l~ 186 (574)
+| ....+ |+.|-|.+..+...... +..+|.+++|+++.|.+.. ......... +.+++|.+.+|...
T Consensus 116 ----lp----~p~~n-l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 116 ----LP----LPLKN-LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred ----Cc----ccccc-eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 11 12344 88888888877653332 6778888888888884432 112222222 24555555554322
Q ss_pred ccc-CccccccCCchhhcCCCCCCeEeccCCcccCCCC----CCCCCCcEEEcCCCccccccc-ccccCCCCccEEECCC
Q 041121 187 DLA-NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLPSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSS 260 (574)
Q Consensus 187 ~l~-~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~ 260 (574)
.-. .+.+ ...++++..+.+..|.+...-. ...+.+..|+|+.+.|.+... ..+.+++.|..|.+++
T Consensus 187 ~w~~~~~l--------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 187 LWLNKNKL--------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred HHHHHHhH--------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 100 0000 1234455555555555543211 113344455555555544322 2334555555555555
Q ss_pred CCCC
Q 041121 261 NLLS 264 (574)
Q Consensus 261 n~l~ 264 (574)
+.+.
T Consensus 259 ~Pl~ 262 (418)
T KOG2982|consen 259 NPLS 262 (418)
T ss_pred Cccc
Confidence 5544
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5e-08 Score=89.08 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=18.7
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFN 92 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 92 (574)
..|+.|.+-++++.+.+...+++..+|+.|+|+.+
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 34455555555555555555555555555555543
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=4.5e-06 Score=72.39 Aligned_cols=120 Identities=22% Similarity=0.200 Sum_probs=72.7
Q ss_pred cEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 41 KTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 41 ~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
+.++|.+.++..+..+ ......+||++|.+. .-..|.+++.|.+|.|++|+|+.+-|. +.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~-L~-------------- 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPD-LD-------------- 84 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccc-hh--------------
Confidence 3455555555444222 245556677777664 224566777788888888877744442 11
Q ss_pred ccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccccc---chhhhccCCCCEEEccC
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTI---NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~ 182 (574)
.-+|+ |+.|.+.+|++..... .++.+|+|++|.+-+|.++... .-.+..+++|++||+.+
T Consensus 85 ----~~~p~-l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 ----TFLPN-LKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----hhccc-cceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 12455 7788888887765333 2777788888888777775322 12355677777777765
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.4e-06 Score=55.15 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=33.2
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL 53 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 53 (574)
++|++|++++|+|++++. .+++|++|++|++++|+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP---ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCc---hHhCCCCCCEEEecCCCCCCC
Confidence 589999999999999876 689999999999999998865
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=5.3e-06 Score=71.92 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=97.1
Q ss_pred CCcEEECCCCCCCCCCchhhhcC-CCCCCcEEEccCCCCCCCCCcC--CcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 13 SLRYLNLEENNLANCSDWFQVIG-KLHSLKTLTSHSCYLRPLSNIS--SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
+=+.++|.+.++..+.. ++ -+.+...+||++|.+..+..+. +.|.+|.+++|+|+.+.|.--.-+++|+.|.|
T Consensus 20 ~e~e~~LR~lkip~ien----lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIEN----LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccchhh----ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 35778888888776632 22 2457788999999999886665 89999999999999877776677899999999
Q ss_pred cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC----CCCCCCCCEEEccCccc
Q 041121 90 MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD----LGGFSSMKRLYLSDNLL 161 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~L~~n~i 161 (574)
.+|.|..... +. .+..+|+ |++|.+-+|..+....- +..+|+|+.||+.+-.-
T Consensus 96 tnNsi~~l~d--l~----------------pLa~~p~-L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 96 TNNSIQELGD--LD----------------PLASCPK-LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCcchhhhhh--cc----------------hhccCCc-cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9998873211 11 4566887 99999999998864432 77899999999986443
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.2e-08 Score=88.99 Aligned_cols=154 Identities=21% Similarity=0.143 Sum_probs=101.5
Q ss_pred cCcEEEccCCcccccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcC
Q 041121 127 SLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204 (574)
Q Consensus 127 ~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~ 204 (574)
+||+|||+...++... .. +..+.+|+.|.+.++++.+.+...+....+|+.|+++.+. .|...-....+..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------G~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------GFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-------ccchhHHHHHHHh
Confidence 4888888888777422 22 6778888888888888888888888888889988888753 1111112233677
Q ss_pred CCCCCeEeccCCcccCCCCC-----CCCCCcEEEcCCCccc---ccccccccCCCCccEEECCCCC-CCCCCCcchhcCC
Q 041121 205 GTSNPGIDISSNHFEGPIPP-----LPSNSSFLNLSKNRFS---RSISLCSISGSKLTYIDLSSNL-LSGKLPDCWWMFD 275 (574)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~L~~n~i~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 275 (574)
|+.|..|+++-|.+...... .-++++.|+|++.+=. .-...-...+|++.+|||++|- ++......|..++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 88888888888877654322 2467777877766321 1111112366778888887653 4443444566777
Q ss_pred CCcEEEccCccc
Q 041121 276 SLVILDLGNNSF 287 (574)
Q Consensus 276 ~L~~L~L~~N~l 287 (574)
.|++|.++.+..
T Consensus 339 ~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 339 YLQHLSLSRCYD 350 (419)
T ss_pred hheeeehhhhcC
Confidence 777777777763
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.4e-06 Score=79.92 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CCc---CCcccEEEccCCcCCC-CCCccccCCCCC
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SNI---SSNFVSIDLSFNQLQG-SIPDSSQHMVYL 84 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~---~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L 84 (574)
.+++++.+||.+|.|++...+..-+.++|.|++|+++.|++... ..+ ..+|++|.|.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 46678888888888887755555567788888888888887766 222 2578888887776642 234455677788
Q ss_pred CEEEccCCcC
Q 041121 85 EHLSLMFNEL 94 (574)
Q Consensus 85 ~~L~L~~n~l 94 (574)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8887777743
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.9e-06 Score=77.94 Aligned_cols=191 Identities=17% Similarity=0.063 Sum_probs=104.8
Q ss_pred hcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCCC----CC---------ccccCCCCCCEEEccC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQGS----IP---------DSSQHMVYLEHLSLMF 91 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~~----~~---------~~~~~l~~L~~L~L~~ 91 (574)
++-+|++|+..+||+|.+..- ..-...|.+|.|++|.+.-+ +. +-...-|.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 444555555555555544432 11124555555555554321 11 1223557788888888
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC------CCCCCCCCCCEEEccCccccc--
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI------PDLGGFSSMKRLYLSDNLLNG-- 163 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~------~~l~~l~~L~~L~L~~n~i~~-- 163 (574)
|++. ..+...... .+..-.. |+.+.+.+|.|.... ..+..+.+|+.||+.+|-++-
T Consensus 167 NRle-ngs~~~~a~--------------~l~sh~~-lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g 230 (388)
T COG5238 167 NRLE-NGSKELSAA--------------LLESHEN-LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG 230 (388)
T ss_pred chhc-cCcHHHHHH--------------HHHhhcC-ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh
Confidence 8776 233222211 2222334 777777777765321 114456788888888887652
Q ss_pred --ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------C----CCCCCCcE
Q 041121 164 --TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------P----PLPSNSSF 231 (574)
Q Consensus 164 --~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~----~~~~~L~~ 231 (574)
....++..++.|+.|.+.+|-++.-....+. ........++|..|-..+|...+.. + ..++-|..
T Consensus 231 S~~La~al~~W~~lrEL~lnDClls~~G~~~v~---~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 231 SRYLADALCEWNLLRELRLNDCLLSNEGVKSVL---RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred HHHHHHHhcccchhhhccccchhhccccHHHHH---HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 3445566677788888887776643322222 1222345567777777777665421 1 12566777
Q ss_pred EEcCCCccccc
Q 041121 232 LNLSKNRFSRS 242 (574)
Q Consensus 232 L~L~~n~i~~~ 242 (574)
+.+.+|+|...
T Consensus 308 le~ngNr~~E~ 318 (388)
T COG5238 308 LERNGNRIKEL 318 (388)
T ss_pred HHHccCcchhH
Confidence 77888887754
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=6.3e-06 Score=53.87 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=28.4
Q ss_pred CCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCccc
Q 041121 149 SSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLA 189 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 189 (574)
++|++|++++|+|+. +|..+.++++|++|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 467888888888873 4556788888888888888877554
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=2.6e-07 Score=74.61 Aligned_cols=120 Identities=25% Similarity=0.282 Sum_probs=88.6
Q ss_pred cccEEEccCCcCCCCCCcc---ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccC
Q 041121 59 NFVSIDLSFNQLQGSIPDS---SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEV 135 (574)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~ 135 (574)
.+-.++|++|.+- .++++ +....+|+..+|++|.+. ..|..|. ..++. ++.|++++
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft------------------~kf~t-~t~lNl~~ 86 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFT------------------IKFPT-ATTLNLAN 86 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHh------------------hccch-hhhhhcch
Confidence 4567788888775 33433 345566777788888887 5555443 23445 88999999
Q ss_pred CcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCch
Q 041121 136 NHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDL 200 (574)
Q Consensus 136 n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~ 200 (574)
|.+++++.+++.++.|+.|+++.|.+. ..|..+..+.++..|+..+|.+..++...+....|..
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al 150 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPAL 150 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHH
Confidence 999976666999999999999999997 6677777799999999999988877766554444443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=2.4e-05 Score=77.18 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=65.8
Q ss_pred cCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCC-cCccCchhhhhcccCCCCCc
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFN-ELEGGIPKFFGNMLNLSDNK 112 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~n~ 112 (574)
+..+.+++.|++++|.++.++.++++|++|.+++|.--..+|+.+ .++|++|++++| .+. .+|..+..+. ++.+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~-L~~n~ 123 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLE-IKGSA 123 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccccceEE-eCCCC
Confidence 344566777777777666666666667777776643222444433 246777777766 443 4444433321 22222
Q ss_pred cccccccccccccccCcEEEccCCcccccCCCCCCC-CCCCEEEccCcccccccchhhhccCCCCEEEccCC
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGF-SSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN 183 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 183 (574)
... +..+|.+|+.|.+.+++.......-..+ ++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 124 ~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 124 TDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred Ccc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 111 2223334666665432211000000011 45666666665543 2333332 35666666554
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.69 E-value=0.00017 Score=60.50 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=30.8
Q ss_pred ccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC
Q 041121 116 IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 116 l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 182 (574)
|++.+|.++.+ |+.+.+.. .+..+... |.++++|+.+.+.++ +..+...+|.++++++.+.+..
T Consensus 3 i~~~~F~~~~~-l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSN-LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT---EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCC-CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 44446666666 67666664 44444444 666666777766654 5545555666666666666644
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00049 Score=57.69 Aligned_cols=121 Identities=10% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC
Q 041121 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~ 224 (574)
|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +..++...| ..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F---------~~~~~----------------- 59 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF---------SNCKS----------------- 59 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT---------TT-TT-----------------
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee---------ecccc-----------------
Confidence 78888999999875 577677788989988999998875 665554433 33333
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
++.+.+.+ .+..+....|..+++++.+.+..+ +.......|.++ +|+.+.+.. .++......|.++++|
T Consensus 60 ----l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 60 ----LESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -----EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ----cccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 44455543 344444555666677777777654 443445566666 777777665 3333445556555544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.43 E-value=0.00082 Score=66.56 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=82.5
Q ss_pred ccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCC-CCCcccCccccccCCchhh
Q 041121 124 LKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN-SLTDLANIQIKGKLPDLSS 202 (574)
Q Consensus 124 l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~lp~~~~ 202 (574)
+.+ ++.|++++|.++..+ .+ -++|++|.++++.--...|..+ .++|++|++++| .+.. +|
T Consensus 51 ~~~-l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s---------LP---- 111 (426)
T PRK15386 51 ARA-SGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG---------LP---- 111 (426)
T ss_pred hcC-CCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc---------cc----
Confidence 566 889999988777543 22 2468899988743323555544 357888888887 4432 22
Q ss_pred cCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEc
Q 041121 203 RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDL 282 (574)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 282 (574)
..|+.|++..+... .++..+++|+.|.+.++...........-.++|++|++++|... ..|..+. .+|+.|++
T Consensus 112 ---~sLe~L~L~~n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 112 ---ESVRSLEIKGSATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred ---cccceEEeCCCCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 24677777665543 24445677888877543311111000011367889999888765 3444333 48888888
Q ss_pred cCcc
Q 041121 283 GNNS 286 (574)
Q Consensus 283 ~~N~ 286 (574)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 7764
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.0001 Score=79.06 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.4
Q ss_pred cCCCCCCEEEccCCcCc
Q 041121 79 QHMVYLEHLSLMFNELE 95 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~ 95 (574)
.++|+|..||+|++.++
T Consensus 170 ~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNIS 186 (699)
T ss_pred hccCccceeecCCCCcc
Confidence 45555555555555554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.0001 Score=66.93 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=26.2
Q ss_pred cccCcEEEccCCcccc--cCCCCCCCCCCCEEEccCcccccc---cchhhhccCCCCEEEcc
Q 041121 125 KNSLESLHLEVNHFTG--PIPDLGGFSSMKRLYLSDNLLNGT---INKSIGQIFKLEITCLS 181 (574)
Q Consensus 125 ~~~L~~L~L~~n~l~~--~~~~l~~l~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~Ls 181 (574)
|+ |++|+++.|++.. .++.+..+.+|..|++.+|..+.. -...|.-+++|++|+-.
T Consensus 91 P~-l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 91 PN-LKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred Cc-eeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 44 5555555555442 111244455555555555544321 12335555666655543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00019 Score=77.00 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=93.9
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC---CC-------c---------CCcccEEEccC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL---SN-------I---------SSNFVSIDLSF 67 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~-------~---------~~~L~~L~Ls~ 67 (574)
.+..-.++...++.+........ +.+.+.. |+.|.+.+-....- .. + ..+|++||+++
T Consensus 55 ~~~~~f~ltki~l~~~~~~~~~~--~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G 131 (699)
T KOG3665|consen 55 RIIRKFNLTKIDLKNVTLQHQTL--EMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG 131 (699)
T ss_pred hhhhhheeEEeeccceecchhHH--HHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc
Confidence 34445567777777766554411 2344444 66666654322111 00 0 14788888877
Q ss_pred CcCC-CCCCccc-cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCC
Q 041121 68 NQLQ-GSIPDSS-QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDL 145 (574)
Q Consensus 68 n~i~-~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l 145 (574)
...- ..-|..+ ..+|.|++|.+++-.+.. +.|.. ...++|+ |..||+++.+++.. .++
T Consensus 132 ~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~---------------lc~sFpN-L~sLDIS~TnI~nl-~GI 191 (699)
T KOG3665|consen 132 SELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQ---------------LCASFPN-LRSLDISGTNISNL-SGI 191 (699)
T ss_pred cchhhccHHHHHhhhCcccceEEecCceecc---hhHHH---------------HhhccCc-cceeecCCCCccCc-HHH
Confidence 5432 1122222 457888888887655542 22333 4556777 88888888888744 447
Q ss_pred CCCCCCCEEEccCccccc-ccchhhhccCCCCEEEccCCCCC
Q 041121 146 GGFSSMKRLYLSDNLLNG-TINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+.+++|++|.+.+-.+.. ..-..+.++++|+.||+|.....
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 788888888888766653 23345667888888888876544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.91 E-value=7.2e-05 Score=72.18 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=38.2
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCC-CCCC-----CCcCCcccEEEccCC-cCCCCCCc-cccCCCCC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCY-LRPL-----SNISSNFVSIDLSFN-QLQGSIPD-SSQHMVYL 84 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L 84 (574)
.|+.|.+.|+.=......-..-..++++++|++.+|. +++. ....+.|++|++..| .|+...-+ -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4556666655422221111133456666666666664 2222 333456666666653 33322222 22356666
Q ss_pred CEEEccCC
Q 041121 85 EHLSLMFN 92 (574)
Q Consensus 85 ~~L~L~~n 92 (574)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00013 Score=66.66 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=53.4
Q ss_pred CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCcccccccc-cccCC
Q 041121 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNRFSRSISL-CSISG 250 (574)
Q Consensus 173 ~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~i~~~~~~-~~~~~ 250 (574)
.+.+.|+.-++.|++|+. ...++.|+.|.++-|+++...|-. +..|++|+|..|.|..+... .+.++
T Consensus 19 ~~vkKLNcwg~~L~DIsi-----------c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-----------CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHhhhhcccCCCccHHHH-----------HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 344455555555554432 234445555555555554433322 45666677777766655442 23366
Q ss_pred CCccEEECCCCCCCCCCCc-----chhcCCCCcEEE
Q 041121 251 SKLTYIDLSSNLLSGKLPD-----CWWMFDSLVILD 281 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 281 (574)
++|+.|.|..|.-.+..+. .+..+++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777777777765544332 355667777765
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.00012 Score=66.80 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=78.2
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCC-CccccCCCCCC
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSI-PDSSQHMVYLE 85 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 85 (574)
+.+.+.+.|+.-|+.++++. -..+++.|++|.|+-|+|+.+..+ +++|++|.|..|.|.... -..+.++|+|+
T Consensus 16 sdl~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred hHHHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 44667888999999998883 246899999999999999988444 479999999999987432 13457899999
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
+|.|..|.-.+..+...... .+..+|+ |++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~--------------VLR~LPn-LkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRK--------------VLRVLPN-LKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHH--------------HHHHccc-chhcc
Confidence 99999887766555433322 4555666 77664
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.17 E-value=0.00018 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=34.1
Q ss_pred CCCCcEEEcCCCcccccc--cccccCCCCccEEECCCCCCCCCC-----CcchhcCCCCcEEEccCcccc
Q 041121 226 PSNSSFLNLSKNRFSRSI--SLCSISGSKLTYIDLSSNLLSGKL-----PDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~--~~~~~~~~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~ 288 (574)
.+.|+.+++..+...... .....+++.|+.+.++++...... ...-.++..|+.+.+++.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 345555555555433222 111226677888888877643221 122345667788888877654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.0042 Score=56.71 Aligned_cols=88 Identities=22% Similarity=0.213 Sum_probs=62.5
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCC--cCcccCCccccCCCCCCEEeCCCCccccc-CCCCccCCCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRN--HLTGQNSPKIGQLKSLDFLDLSRNQLVGG-IPSSLSPLSV 501 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~ 501 (574)
..+..|+.|.+.+.+++.. ..|..+++|++|.++.| ++++-.+.....+++|++|++++|+|+.+ .-..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3455677777777777522 45677889999999999 55554454556679999999999998831 1123455667
Q ss_pred CCEEeccCCcCcc
Q 041121 502 LSVMDLSYNNLSG 514 (574)
Q Consensus 502 L~~L~Ls~N~l~~ 514 (574)
|..|++.+|.-+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8889999988774
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.16 E-value=0.00019 Score=73.69 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=95.6
Q ss_pred CcEEECCCCCCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--------CCc-CCcccEEEccCCcCCCC----CCccc
Q 041121 14 LRYLNLEENNLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--------SNI-SSNFVSIDLSFNQLQGS----IPDSS 78 (574)
Q Consensus 14 L~~L~Ls~n~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~~L~~L~Ls~n~i~~~----~~~~~ 78 (574)
+..|.|.+|.+.+. ....+++.....|..|++++|.+.+. ... ...+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67778888887776 44556777888888888888887754 111 14567777777777643 44555
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC----CC-CCCCCC-CC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI----PD-LGGFSS-MK 152 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~----~~-l~~l~~-L~ 152 (574)
.....++.++++.|.+....-..... . ++. .+..... +++|.+++|.++... .. +...+. +.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~--~--------l~~-~~~~~~~-le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQ--A--------LES-AASPLSS-LETLKLSRCGVTSSSCALLDEVLASGESLLR 236 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhh--h--------hhh-hhccccc-HHHHhhhhcCcChHHHHHHHHHHhccchhhH
Confidence 56777888888877764111000000 0 000 1222344 777777777765311 11 344444 66
Q ss_pred EEEccCcccccc----cchhhhcc-CCCCEEEccCCCCCccc
Q 041121 153 RLYLSDNLLNGT----INKSIGQI-FKLEITCLSQNSLTDLA 189 (574)
Q Consensus 153 ~L~L~~n~i~~~----~~~~~~~l-~~L~~L~Ls~N~l~~l~ 189 (574)
+|++..|++.+. ....+..+ ..+++++++.|.|+.-.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~ 278 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG 278 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc
Confidence 677777776533 23334444 55677777777766433
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.87 E-value=0.00057 Score=70.22 Aligned_cols=169 Identities=24% Similarity=0.262 Sum_probs=118.4
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC--CchhhhcCCC-CCCcEEEccCCCCCCC---------CCcCCcccEEEccCCcC
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC--SDWFQVIGKL-HSLKTLTSHSCYLRPL---------SNISSNFVSIDLSFNQL 70 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~~~~~l-~~L~~L~l~~n~l~~~---------~~~~~~L~~L~Ls~n~i 70 (574)
.+-+++...+.|+.|++++|.+.+. ....+.+... ..|++|++..|.++.. .. ...++.++++.|.+
T Consensus 106 ~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 106 ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK-NEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc-ccchhHHHHHhccc
Confidence 3557889999999999999999866 3333444444 6788899999998887 12 47899999999988
Q ss_pred CC----CCCcccc----CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc-
Q 041121 71 QG----SIPDSSQ----HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP- 141 (574)
Q Consensus 71 ~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~- 141 (574)
.. .++..+. ...++++|.++++.++...-..+.. ++...+..+..|++..|.+.+.
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~---------------~l~~~~~~~~el~l~~n~l~d~g 249 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE---------------VLASGESLLRELDLASNKLGDVG 249 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH---------------HHhccchhhHHHHHHhcCcchHH
Confidence 42 1333333 5788999999999887222111111 2333333256689999988753
Q ss_pred ----CCCCCCC-CCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCCc
Q 041121 142 ----IPDLGGF-SSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 142 ----~~~l~~l-~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 187 (574)
.+.+..+ ..+++++++.|.|... ....+..++.++++.++.|.+.+
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2225555 7889999999999754 34556677889999999998774
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.018 Score=31.10 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=9.6
Q ss_pred CCEEEccCcccccccchhhh
Q 041121 151 MKRLYLSDNLLNGTINKSIG 170 (574)
Q Consensus 151 L~~L~L~~n~i~~~~~~~~~ 170 (574)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3444343
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.016 Score=31.25 Aligned_cols=12 Identities=42% Similarity=0.423 Sum_probs=5.7
Q ss_pred ccEEEccCCcCC
Q 041121 60 FVSIDLSFNQLQ 71 (574)
Q Consensus 60 L~~L~Ls~n~i~ 71 (574)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.054 Score=27.07 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=6.2
Q ss_pred CCcEEECCCCCCCC
Q 041121 13 SLRYLNLEENNLAN 26 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~ 26 (574)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45556666655544
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.13 E-value=0.032 Score=58.51 Aligned_cols=83 Identities=23% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCCcEEECCCCC-CCCCCchhhhcCCCCCCcEEEccCC-CC-CCC-------CCcCCcccEEEccCCc-CCCCCCccc
Q 041121 10 RLHSLRYLNLEENN-LANCSDWFQVIGKLHSLKTLTSHSC-YL-RPL-------SNISSNFVSIDLSFNQ-LQGSIPDSS 78 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~-i~~~~~~~~~~~~l~~L~~L~l~~n-~l-~~~-------~~~~~~L~~L~Ls~n~-i~~~~~~~~ 78 (574)
.++.|+.|.+.++. ++... .......++.|+.|+++++ .. ... ....++|+.|+++++. ++...-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 35667777766664 33321 1224556777777777663 11 111 1222566666666665 443322222
Q ss_pred c-CCCCCCEEEccCCc
Q 041121 79 Q-HMVYLEHLSLMFNE 93 (574)
Q Consensus 79 ~-~l~~L~~L~L~~n~ 93 (574)
. .+++|++|.+.++.
T Consensus 265 ~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS 280 (482)
T ss_pred HhhCCCcceEccCCCC
Confidence 2 25666666655444
No 75
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.84 E-value=0.06 Score=64.91 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=20.3
Q ss_pred eccCCcCcccCCCc--chhcccCcccccCCCCCCCCCC
Q 041121 506 DLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 506 ~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l 541 (574)
||++|+|+ .+|.. ..+.++..+++++|||.|+|.+
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcccccccc
Confidence 35555555 44433 1244555566677777787776
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.014 Score=51.17 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCC-cCCCCCCccccCCCCCC
Q 041121 13 SLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFN-QLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 85 (574)
.++.+|-++..|... ..+.+..++.++.|.+.+|.--+. .+..++|+.|++++| +|+...-..+.++++|+
T Consensus 102 ~IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHH--HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 467788888777665 123678889999999999864333 556799999999998 68876667788899999
Q ss_pred EEEccCC
Q 041121 86 HLSLMFN 92 (574)
Q Consensus 86 ~L~L~~n 92 (574)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988754
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.50 E-value=0.0048 Score=55.14 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=74.8
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCE
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 504 (574)
......+.||++.|++. .....|+-++.|..|+++.|.+. ..|..+++...++.+++.+|..+ ..|..+...+.+++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34556789999999986 56677888899999999999998 78888999999999999999888 77888999999999
Q ss_pred EeccCCcCc
Q 041121 505 MDLSYNNLS 513 (574)
Q Consensus 505 L~Ls~N~l~ 513 (574)
+++-+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 999999976
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.89 E-value=0.11 Score=29.22 Aligned_cols=13 Identities=62% Similarity=0.652 Sum_probs=5.3
Q ss_pred CCCEEeCCCCccc
Q 041121 477 SLDFLDLSRNQLV 489 (574)
Q Consensus 477 ~L~~L~L~~N~i~ 489 (574)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.89 E-value=0.11 Score=29.22 Aligned_cols=13 Identities=62% Similarity=0.652 Sum_probs=5.3
Q ss_pred CCCEEeCCCCccc
Q 041121 477 SLDFLDLSRNQLV 489 (574)
Q Consensus 477 ~L~~L~L~~N~i~ 489 (574)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.54 E-value=0.15 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCcccCCccc
Q 041121 452 VGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
++|+.|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.54 E-value=0.15 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCcccCCccc
Q 041121 452 VGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 452 ~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
++|+.|+|++|+|+.+.++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544444
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.06 E-value=0.096 Score=54.93 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=62.6
Q ss_pred hhhcCCCCCcEEECCCC-C-CCCCCch-hhhcCCCCCCcEEEccCCC-CCCC-----CCcCCcccEEEccCCc-CCCC-C
Q 041121 6 MRSLRLHSLRYLNLEEN-N-LANCSDW-FQVIGKLHSLKTLTSHSCY-LRPL-----SNISSNFVSIDLSFNQ-LQGS-I 74 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n-~-i~~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-----~~~~~~L~~L~Ls~n~-i~~~-~ 74 (574)
.....+++|+.|+++++ . +...+.. ......+++|+.|+++++. +++. ....++|++|.+.+|. ++.. +
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 45678899999999973 2 2222211 1134568999999999998 6655 2335799999988886 5543 2
Q ss_pred CccccCCCCCCEEEccCCcCc
Q 041121 75 PDSSQHMVYLEHLSLMFNELE 95 (574)
Q Consensus 75 ~~~~~~l~~L~~L~L~~n~l~ 95 (574)
......+++|++|+++++...
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhcCcccEEeeecCccc
Confidence 333467889999999977553
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=0.046 Score=48.12 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=58.3
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC-Ccccc-CCCCCCEEeCCCC-cccccCCCCccCCCCCCEEe
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN-SPKIG-QLKSLDFLDLSRN-QLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~-~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~ 506 (574)
++.+|-++..|..+--+-+..++.++.|.+.+|+--+.. -+.++ ..++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 588899998887665566777888888888888633211 11122 3478999999988 78876666778888888887
Q ss_pred ccCCc
Q 041121 507 LSYNN 511 (574)
Q Consensus 507 Ls~N~ 511 (574)
+.+=.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 76543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.67 E-value=0.19 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=10.9
Q ss_pred CCCCCEEEccCCcCccCchh
Q 041121 81 MVYLEHLSLMFNELEGGIPK 100 (574)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~ 100 (574)
+++|++|+|++|+|+.....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 35677777777777654443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.16 E-value=0.27 Score=27.02 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=10.1
Q ss_pred CCCCEEEccCcccccccchh
Q 041121 149 SSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 149 ~~L~~L~L~~n~i~~~~~~~ 168 (574)
++|++|+|++|+|++....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 55666666666665444333
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.61 E-value=0.041 Score=49.43 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=45.2
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
+..|+++.|.+. ..|..+..+..+..+++-+|..+ ..|.+++..++++.+++.+|.+.
T Consensus 67 ~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 67 LVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 577788888876 77778887777778887777776 66778888888888888888755
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.05 E-value=1.3 Score=24.91 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=9.1
Q ss_pred CCCcEEECCCCCCCCC
Q 041121 12 HSLRYLNLEENNLANC 27 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~ 27 (574)
++|++|++++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666665544
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.92 E-value=1.3 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.0
Q ss_pred CCCCEEeccCCcCcccCCC
Q 041121 500 SVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 500 ~~L~~L~Ls~N~l~~~~p~ 518 (574)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36788888888887 7775
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.02 E-value=17 Score=36.91 Aligned_cols=133 Identities=20% Similarity=0.038 Sum_probs=65.9
Q ss_pred CCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-
Q 041121 147 GFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL- 225 (574)
Q Consensus 147 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~- 225 (574)
.-+.+++++++.|.+....|-.+..-. --+.++.+.+++- |...++. ...-..+++++++.|.....+|..
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lssk----fis~l~~--qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSK----FISKLLI--QSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCC--Cccchhhhhhhhh----HHHHhhh--hhccccccccccccCCCCccchhHH
Confidence 345667777777776655443332211 1144455444421 1111111 122335677788887777666654
Q ss_pred -----CCCCcEEEcCCCcccc---cccccccCCCCccEEECCCCCCC--------CCCCcchhcCCCCcEEEccCcccc
Q 041121 226 -----PSNSSFLNLSKNRFSR---SISLCSISGSKLTYIDLSSNLLS--------GKLPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 226 -----~~~L~~L~L~~n~i~~---~~~~~~~~~~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
...++.++.+...+.- ..+..+...+++...+++.|..+ +...+.|..-.++ +|++...+..
T Consensus 235 n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 235 NKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred HHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCc
Confidence 2345556666655542 12223334566777777766543 1122334444555 6665555443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.50 E-value=1.7 Score=44.52 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=17.6
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCC
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSC 48 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n 48 (574)
+.+.+..+.|++|++..+..+...-...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445555555555555444222111223445555555554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.25 E-value=4.3 Score=23.24 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=10.7
Q ss_pred CCCcEEECCCCCCCCC
Q 041121 12 HSLRYLNLEENNLANC 27 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~ 27 (574)
+.|++|||++|.|...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4677777777776543
No 92
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=56.53 E-value=5.4 Score=26.54 Aligned_cols=10 Identities=40% Similarity=0.766 Sum_probs=8.9
Q ss_pred CCCCCCCCCC
Q 041121 533 NPELCGLPLP 542 (574)
Q Consensus 533 Np~~c~~~l~ 542 (574)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999985
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.14 E-value=9.4 Score=39.42 Aligned_cols=62 Identities=23% Similarity=0.194 Sum_probs=42.0
Q ss_pred CCCCCCcEEEccCCCCCCCCCc------CCcccEEEccCCcCCCCCCcccc--CCCCCCEEEccCCcCcc
Q 041121 35 GKLHSLKTLTSHSCYLRPLSNI------SSNFVSIDLSFNQLQGSIPDSSQ--HMVYLEHLSLMFNELEG 96 (574)
Q Consensus 35 ~~l~~L~~L~l~~n~l~~~~~~------~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~ 96 (574)
.+.+.+..++|++|++..+..+ .++|.+|+|++|.....-..++. +...|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4667788888999988877333 37899999999833222223333 33457888888887763
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.73 E-value=18 Score=20.13 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=7.7
Q ss_pred CCCCcEEEccCCC
Q 041121 37 LHSLKTLTSHSCY 49 (574)
Q Consensus 37 l~~L~~L~l~~n~ 49 (574)
+++|++|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3556666666663
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.55 E-value=16 Score=45.48 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=14.4
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcC
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHL 464 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 464 (574)
|++|+|+.+.+..|..+++|++|+|++|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 445555444444444455555555554444
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.27 E-value=61 Score=33.12 Aligned_cols=59 Identities=27% Similarity=0.218 Sum_probs=37.1
Q ss_pred CcEEEccCCcccccCCC----CCCCCCCCEEEccCccccc---ccchhhhccCCCCEEEccCCCCC
Q 041121 128 LESLHLEVNHFTGPIPD----LGGFSSMKRLYLSDNLLNG---TINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~----l~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+.+++++.|.....++. .+.-..++.++.+...+.- ..+-.++.-++++..+++.|..+
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 77888888877766665 2333567777777766642 12333444567777777777654
Done!