Query 041121
Match_columns 574
No_of_seqs 337 out of 2982
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 06:13:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-60 7.2E-65 524.3 42.7 542 7-562 121-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 8E-55 2.7E-59 479.8 36.6 526 3-537 68-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6E-52 2E-56 452.9 42.2 488 7-541 44-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.7E-52 9.3E-57 449.6 34.8 478 3-541 26-565 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-50 1.4E-54 432.6 28.7 459 4-542 26-564 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-48 1.2E-52 423.1 40.3 532 4-547 19-627 (680)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-48 4.3E-53 421.0 33.2 470 5-519 50-566 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-49 2.4E-53 436.9 29.8 483 10-542 22-566 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-46 5.1E-51 404.9 36.3 439 5-519 49-564 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 6.2E-45 2.1E-49 389.5 33.3 473 14-542 9-537 (570)
11 2z63_A TOLL-like receptor 4, v 100.0 3.9E-45 1.3E-49 391.1 30.5 461 4-538 22-558 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-45 5.1E-50 392.4 23.2 430 12-540 26-514 (549)
13 4eco_A Uncharacterized protein 100.0 4E-44 1.4E-48 385.8 30.6 422 12-513 81-600 (636)
14 3j0a_A TOLL-like receptor 5; m 100.0 9.4E-44 3.2E-48 395.7 30.0 470 15-536 7-539 (844)
15 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-43 1.8E-47 379.6 31.6 442 13-541 53-585 (635)
16 4eco_A Uncharacterized protein 100.0 9.7E-43 3.3E-47 375.0 29.2 350 33-494 201-605 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.9E-44 1.7E-48 377.9 18.5 452 15-542 3-487 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 1.5E-42 5.3E-47 379.3 28.3 448 12-541 323-871 (876)
19 4ecn_A Leucine-rich repeat pro 100.0 1E-41 3.4E-46 372.9 29.7 415 58-537 323-841 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-42 9.1E-47 367.3 22.3 423 5-518 43-515 (549)
21 3v47_A TOLL-like receptor 5B a 100.0 4E-41 1.4E-45 349.6 29.8 384 40-519 12-414 (455)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-41 1.1E-45 359.4 21.4 449 41-542 34-516 (562)
23 2z7x_B TOLL-like receptor 1, v 100.0 6.3E-41 2.2E-45 354.1 20.9 437 3-517 14-485 (520)
24 3v47_A TOLL-like receptor 5B a 100.0 3.9E-39 1.3E-43 334.6 29.0 370 60-541 12-413 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-38 3.2E-42 338.4 35.8 442 3-517 66-584 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 1.5E-38 5.1E-43 327.6 27.0 391 5-538 5-431 (454)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-39 5.2E-44 346.3 20.1 428 11-519 30-516 (562)
28 2id5_A Lingo-1, leucine rich r 100.0 6.8E-38 2.3E-42 327.1 25.2 319 40-489 13-333 (477)
29 3bz5_A Internalin-J, INLJ; leu 100.0 5.5E-37 1.9E-41 316.2 26.4 356 7-519 37-393 (457)
30 2id5_A Lingo-1, leucine rich r 100.0 5.6E-37 1.9E-41 320.1 26.3 299 128-513 34-333 (477)
31 1o6v_A Internalin A; bacterial 100.0 9E-36 3.1E-40 309.6 32.4 346 11-518 45-392 (466)
32 1o6v_A Internalin A; bacterial 100.0 6.1E-35 2.1E-39 303.4 29.1 343 37-537 45-389 (466)
33 1jl5_A Outer protein YOPM; leu 100.0 5.7E-35 1.9E-39 300.9 27.2 363 60-537 13-410 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 7.8E-35 2.7E-39 295.7 24.6 106 430-541 274-379 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-33 1.2E-37 287.7 30.7 348 33-536 37-387 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 5E-34 1.7E-38 289.7 22.3 314 80-541 43-357 (390)
37 3oja_B Anopheles plasmodium-re 100.0 7E-34 2.4E-38 304.3 24.4 333 58-540 51-384 (597)
38 4fmz_A Internalin; leucine ric 100.0 1E-32 3.5E-37 275.6 29.5 83 427-513 264-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 4.5E-33 1.5E-37 278.2 26.9 102 428-534 243-344 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 8.6E-34 3E-38 278.3 16.3 259 228-546 51-313 (313)
41 3oja_B Anopheles plasmodium-re 100.0 5.3E-33 1.8E-37 297.5 22.4 313 80-540 49-362 (597)
42 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-31 6.5E-36 264.4 26.0 287 128-511 35-331 (332)
43 1xku_A Decorin; proteoglycan, 100.0 9E-31 3.1E-35 259.4 28.2 288 128-511 33-330 (330)
44 1xku_A Decorin; proteoglycan, 100.0 2E-30 6.7E-35 257.0 29.5 291 38-389 31-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-31 3.2E-35 259.4 26.8 289 39-389 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-34 1.1E-38 298.1 -3.6 211 227-513 170-411 (461)
47 3zyi_A Leucine-rich repeat-con 100.0 6.3E-30 2.1E-34 264.5 24.0 252 207-541 55-308 (452)
48 3zyj_A Leucine-rich repeat-con 100.0 7.8E-30 2.7E-34 262.9 24.6 252 207-541 44-297 (440)
49 1ogq_A PGIP-2, polygalacturona 100.0 9.2E-31 3.1E-35 256.7 16.7 247 128-512 52-303 (313)
50 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.8E-37 286.6 -0.4 257 12-289 3-298 (461)
51 2z66_A Variable lymphocyte rec 100.0 3E-29 1E-33 245.7 17.1 273 209-538 10-289 (306)
52 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4.2E-33 238.7 18.1 249 209-538 14-263 (285)
53 2z66_A Variable lymphocyte rec 100.0 2.8E-28 9.5E-33 238.8 18.8 280 128-519 9-293 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 5.8E-29 2E-33 248.8 14.1 276 171-540 29-318 (353)
55 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.5E-33 245.5 16.6 258 128-517 54-318 (353)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-27 5.8E-32 230.7 19.0 228 230-541 14-243 (285)
57 3zyj_A Leucine-rich repeat-con 99.9 2.7E-26 9.2E-31 236.4 24.7 246 39-367 44-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 4.3E-26 1.5E-30 235.7 25.2 246 39-345 55-305 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-25 6.4E-30 236.8 28.0 270 12-379 40-309 (622)
60 3o53_A Protein LRIM1, AGAP0063 99.9 6.9E-28 2.4E-32 236.9 5.4 89 427-517 190-280 (317)
61 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-25 2.6E-29 232.1 28.5 262 128-519 42-303 (622)
62 3ogk_B Coronatine-insensitive 99.9 6.3E-29 2.1E-33 266.7 -3.5 409 5-513 66-526 (592)
63 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 222.0 19.6 202 227-513 104-314 (328)
64 2z62_A TOLL-like receptor 4, v 99.9 2.8E-25 9.6E-30 213.9 21.1 226 211-518 12-242 (276)
65 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 220.7 19.0 222 227-534 81-312 (328)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.2E-32 232.7 5.9 250 120-495 29-282 (317)
67 2z62_A TOLL-like receptor 4, v 99.9 3.2E-25 1.1E-29 213.6 19.2 226 231-541 11-242 (276)
68 1wwl_A Monocyte differentiatio 99.9 4.6E-27 1.6E-31 230.5 6.2 249 8-289 39-310 (312)
69 3ogk_B Coronatine-insensitive 99.9 1.6E-28 5.3E-33 263.6 -4.7 394 7-510 107-548 (592)
70 1p9a_G Platelet glycoprotein I 99.9 3.2E-25 1.1E-29 214.5 18.3 110 430-540 102-212 (290)
71 2o6q_A Variable lymphocyte rec 99.9 1.2E-24 4.1E-29 208.7 21.8 205 228-516 17-221 (270)
72 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.6E-31 239.6 9.0 78 428-507 191-269 (487)
73 1wwl_A Monocyte differentiatio 99.9 9.7E-27 3.3E-31 228.2 3.8 245 206-536 43-309 (312)
74 1p9a_G Platelet glycoprotein I 99.9 1.4E-23 4.7E-28 203.0 23.7 204 202-514 6-209 (290)
75 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.8E-28 201.2 22.9 205 206-491 16-220 (270)
76 3oja_A Leucine-rich immune mol 99.9 4.8E-25 1.6E-29 229.1 11.0 244 228-542 35-288 (487)
77 2p1m_B Transport inhibitor res 99.9 2.3E-26 7.8E-31 246.9 -4.5 408 7-513 61-519 (594)
78 2p1m_B Transport inhibitor res 99.9 3E-26 1E-30 245.9 -6.6 394 6-513 99-544 (594)
79 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.5E-28 199.6 14.0 202 226-519 40-241 (272)
80 3m19_A Variable lymphocyte rec 99.9 2E-22 7E-27 190.8 18.7 212 252-548 15-232 (251)
81 2xwt_C Thyrotropin receptor; s 99.9 8.5E-23 2.9E-27 192.0 14.9 202 225-533 29-236 (239)
82 4ay9_X Follicle-stimulating ho 99.9 9.9E-23 3.4E-27 202.9 11.6 240 209-511 12-257 (350)
83 3rfs_A Internalin B, repeat mo 99.9 4.4E-22 1.5E-26 190.9 15.6 226 152-501 22-247 (272)
84 2xwt_C Thyrotropin receptor; s 99.9 2.2E-22 7.6E-27 189.2 12.8 177 276-536 32-218 (239)
85 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4E-26 185.6 17.6 183 275-541 14-198 (251)
86 3goz_A Leucine-rich repeat-con 99.9 2.3E-23 8E-28 208.6 5.7 112 62-189 2-125 (362)
87 3goz_A Leucine-rich repeat-con 99.9 2.4E-23 8.2E-28 208.5 5.1 87 429-515 197-299 (362)
88 4glp_A Monocyte differentiatio 99.9 4.5E-22 1.5E-26 194.8 12.6 223 228-536 65-307 (310)
89 4glp_A Monocyte differentiatio 99.9 1.3E-21 4.5E-26 191.5 13.9 226 37-289 63-308 (310)
90 2ca6_A RAN GTPase-activating p 99.9 3E-23 1E-27 209.9 1.7 247 3-291 23-319 (386)
91 2ca6_A RAN GTPase-activating p 99.9 2.3E-23 8E-28 210.7 -0.0 253 145-517 28-320 (386)
92 4ay9_X Follicle-stimulating ho 99.9 9.5E-21 3.3E-25 188.6 18.5 212 41-301 12-228 (350)
93 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.4E-25 184.7 17.5 194 226-517 40-233 (308)
94 2ast_B S-phase kinase-associat 99.8 4.5E-22 1.5E-26 197.4 5.5 208 227-519 93-312 (336)
95 1h6u_A Internalin H; cell adhe 99.8 3.4E-20 1.2E-24 181.0 17.5 195 120-368 36-231 (308)
96 2ast_B S-phase kinase-associat 99.8 1.8E-21 6.1E-26 193.1 7.3 151 83-286 48-206 (336)
97 2v9t_B SLIT homolog 2 protein 99.8 3.9E-20 1.3E-24 171.0 13.1 156 333-541 14-170 (220)
98 2xot_A Amphoterin-induced prot 99.8 1.8E-20 6.1E-25 187.4 11.5 111 430-541 90-207 (361)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-19 5E-24 167.2 13.4 153 333-514 14-167 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 6.9E-24 166.2 13.6 155 253-491 13-168 (220)
101 2o6s_A Variable lymphocyte rec 99.8 2.4E-19 8.4E-24 164.5 14.1 182 208-477 9-190 (208)
102 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.2E-24 188.6 13.7 34 251-288 100-133 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 2.5E-19 8.7E-24 165.6 12.9 132 333-514 35-166 (220)
104 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 163.2 13.7 130 333-519 55-184 (208)
105 3e6j_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 161.2 14.8 154 333-540 22-176 (229)
106 1h6t_A Internalin B; cell adhe 99.8 2.3E-18 7.9E-23 166.4 13.7 147 10-187 44-192 (291)
107 3cvr_A Invasion plasmid antige 99.8 5.8E-18 2E-22 177.2 16.5 183 228-519 60-249 (571)
108 2xot_A Amphoterin-induced prot 99.8 4.8E-18 1.7E-22 169.7 14.8 179 209-465 21-202 (361)
109 1h6t_A Internalin B; cell adhe 99.8 6.4E-18 2.2E-22 163.3 15.1 169 250-513 45-213 (291)
110 2wfh_A SLIT homolog 2 protein 99.8 2.8E-18 9.5E-23 154.9 11.6 140 429-570 32-188 (193)
111 3e6j_A Variable lymphocyte rec 99.8 1.5E-17 5.1E-22 154.7 16.3 134 333-517 43-176 (229)
112 1w8a_A SLIT protein; signaling 99.7 9.8E-18 3.3E-22 151.4 13.7 154 333-539 11-165 (192)
113 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 177.3 14.8 170 227-491 43-212 (605)
114 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.1E-22 150.1 13.6 139 429-567 30-185 (192)
115 1m9s_A Internalin B; cell inva 99.7 1.9E-17 6.5E-22 175.3 16.1 173 8-222 39-213 (605)
116 4ezg_A Putative uncharacterize 99.7 6.4E-18 2.2E-22 153.4 10.8 150 9-185 41-193 (197)
117 3sb4_A Hypothetical leucine ri 99.7 1.3E-17 4.6E-22 164.3 10.9 214 226-506 100-327 (329)
118 4ezg_A Putative uncharacterize 99.7 7.1E-17 2.4E-21 146.5 13.8 125 333-513 69-194 (197)
119 3sb4_A Hypothetical leucine ri 99.7 7.6E-18 2.6E-22 166.1 7.1 263 81-384 48-327 (329)
120 1xeu_A Internalin C; cellular 99.7 4.7E-17 1.6E-21 154.7 11.2 78 430-513 108-185 (263)
121 4fdw_A Leucine rich hypothetic 99.7 9.1E-16 3.1E-20 154.4 19.8 85 426-513 298-383 (401)
122 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.4E-21 151.0 12.8 162 107-290 25-187 (263)
123 4fdw_A Leucine rich hypothetic 99.7 3.4E-15 1.2E-19 150.2 20.3 68 443-513 291-358 (401)
124 1dce_A Protein (RAB geranylger 99.6 8.6E-19 2.9E-23 184.5 -8.2 213 145-483 345-567 (567)
125 1dce_A Protein (RAB geranylger 99.6 2.3E-18 8E-23 181.2 -5.0 192 248-519 346-552 (567)
126 2wfh_A SLIT homolog 2 protein 99.6 6.9E-16 2.4E-20 139.1 11.9 130 333-516 13-142 (193)
127 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.1E-20 135.2 12.4 111 430-540 30-141 (177)
128 4b8c_D Glucose-repressible alc 99.6 1.2E-16 4.1E-21 173.6 5.8 54 246-301 219-272 (727)
129 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.2E-20 133.9 11.6 93 425-518 68-164 (168)
130 4b8c_D Glucose-repressible alc 99.6 7.6E-17 2.6E-21 175.1 2.0 152 12-186 173-329 (727)
131 4fs7_A Uncharacterized protein 99.6 3.1E-14 1.1E-18 143.8 20.2 310 113-510 59-376 (394)
132 2o6r_A Variable lymphocyte rec 99.6 5.5E-15 1.9E-19 131.5 12.9 133 333-518 10-142 (177)
133 4fs7_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 142.9 19.5 323 33-505 66-393 (394)
134 2ell_A Acidic leucine-rich nuc 99.6 7E-15 2.4E-19 129.6 11.5 61 430-490 97-161 (168)
135 2je0_A Acidic leucine-rich nuc 99.6 5.5E-15 1.9E-19 127.4 10.1 125 333-509 20-149 (149)
136 3g39_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 128.3 9.9 107 431-540 12-119 (170)
137 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.1E-19 124.7 9.3 129 250-485 16-149 (149)
138 2r9u_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 125.5 9.9 107 431-540 15-122 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.4E-19 127.5 8.1 131 34-187 15-154 (176)
140 3g39_A Variable lymphocyte rec 99.5 7.6E-14 2.6E-18 122.9 10.9 91 429-519 31-121 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.5 7.7E-14 2.6E-18 123.8 9.1 86 426-513 62-153 (176)
142 1ds9_A Outer arm dynein; leuci 99.5 1.5E-15 5E-20 137.9 -2.4 82 428-513 93-185 (198)
143 2r9u_A Variable lymphocyte rec 99.5 3E-13 1E-17 119.5 10.9 88 429-516 34-121 (174)
144 4gt6_A Cell surface protein; l 99.4 1.1E-11 3.8E-16 125.1 22.9 333 113-512 51-390 (394)
145 2ifg_A High affinity nerve gro 99.4 3.5E-13 1.2E-17 133.8 8.8 107 432-540 12-120 (347)
146 1ds9_A Outer arm dynein; leuci 99.4 1.3E-14 4.6E-19 131.5 -3.2 152 251-490 18-186 (198)
147 4gt6_A Cell surface protein; l 99.4 9.6E-11 3.3E-15 118.2 23.5 59 427-489 333-391 (394)
148 3un9_A NLR family member X1; l 99.3 3.2E-13 1.1E-17 134.5 1.9 162 11-188 71-254 (372)
149 2ifg_A High affinity nerve gro 99.3 8.7E-12 3E-16 123.7 10.4 85 429-514 32-117 (347)
150 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 134.4 -3.7 186 58-288 72-283 (372)
151 4h09_A Hypothetical leucine ri 99.1 1.1E-08 3.8E-13 102.5 24.1 125 345-499 231-355 (379)
152 4h09_A Hypothetical leucine ri 99.1 9.1E-09 3.1E-13 103.1 21.4 135 346-510 209-343 (379)
153 2ra8_A Uncharacterized protein 98.8 1.4E-09 4.9E-14 107.1 4.2 68 147-219 250-320 (362)
154 1io0_A Tropomodulin; LRR prote 98.8 3.1E-09 1E-13 94.6 4.0 120 4-139 28-164 (185)
155 2ra8_A Uncharacterized protein 98.7 7.9E-09 2.7E-13 101.9 5.1 176 76-264 133-320 (362)
156 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4.2E-13 90.6 1.7 124 31-186 29-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 3.7E-07 1.2E-11 85.2 5.5 65 451-517 169-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 2.4E-07 8.1E-12 86.5 1.2 80 425-506 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 6.7E-07 2.3E-11 77.3 1.1 88 4-93 53-150 (176)
160 3rfe_A Platelet glycoprotein I 97.9 8.9E-06 3.1E-10 67.0 5.2 56 456-513 12-68 (130)
161 3e4g_A ATP synthase subunit S, 97.9 1.7E-06 5.8E-11 74.7 0.4 84 428-511 61-150 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1E-05 3.4E-10 71.3 3.9 89 4-92 33-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.5 4.3E-05 1.5E-09 67.2 3.0 111 59-185 42-169 (197)
164 3rfe_A Platelet glycoprotein I 97.1 0.00092 3.1E-08 54.8 6.6 55 41-95 11-68 (130)
165 2lz0_A Uncharacterized protein 69.3 8.8 0.0003 29.1 5.5 47 439-486 7-53 (100)
166 2lz0_A Uncharacterized protein 59.7 10 0.00036 28.6 4.2 49 461-510 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-60 Score=524.27 Aligned_cols=542 Identities=28% Similarity=0.363 Sum_probs=412.6
Q ss_pred hhcCCCCCcEEECCCCCCCCC-Cc-------------------------hhhhcCCCCCCcEEEccCCCCCCCC--CcCC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SD-------------------------WFQVIGKLHSLKTLTSHSCYLRPLS--NISS 58 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~-------------------------~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~ 58 (574)
.++++++|++|++++|.++.. +. ....+.++++|++|++++|.+++.. .-.+
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~ 200 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCT
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCC
Confidence 666777777777777666544 22 0001344445555555555444331 2236
Q ss_pred cccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc-ccccccccccccCcEEE
Q 041121 59 NFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI-IQNMSSGCLKNSLESLH 132 (574)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~~~~~~l~~~L~~L~ 132 (574)
+|++|++++|.+++.+|. +..+++|++|++++|.+++..|..|..+. ++++|.+++ +|. . .+++ |++|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~-L~~L~ 275 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L--PLKS-LQYLS 275 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C--CCTT-CCEEE
T ss_pred cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc-c--ccCC-CCEEE
Confidence 888888988888877776 88999999999999999888888888765 777888877 544 2 6777 99999
Q ss_pred ccCCcccccCCC-CCC-CCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCe
Q 041121 133 LEVNHFTGPIPD-LGG-FSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPG 210 (574)
Q Consensus 133 L~~n~l~~~~~~-l~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~ 210 (574)
+++|++++..+. +.. +++|++|++++|++++..|..|..+++|++|++++|.++ +.+|...+..+++|++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--------~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS--------GELPMDTLLKMRGLKV 347 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE--------EECCHHHHTTCTTCCE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc--------CcCCHHHHhcCCCCCE
Confidence 999999877666 555 499999999999999889999999999999999998764 3555544677888888
Q ss_pred EeccCCcccCCCCCC---C-CCCcEEEcCCCcccccccccccC--CCCccEEECCCCCCCCCCCcchhcCCCCcEEEccC
Q 041121 211 IDISSNHFEGPIPPL---P-SNSSFLNLSKNRFSRSISLCSIS--GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 211 L~l~~n~l~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 284 (574)
|++++|.+++.+|.. + .+|+.|++++|.+.+..+..+.. +++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 888888888777765 3 37888888888887766655544 67788888888888877788888888888888888
Q ss_pred cccccCCCcccccccCcccccccc---------ccccCccceeeec---ccccccccccc-----ceEEecCceeccCCC
Q 041121 285 NSFSGRIPDSMGFLQNIQTQFTQQ---------QFNRRTVFIVWEL---LTTQTFESWEE-----RFVRLKSNKFHGKTP 347 (574)
Q Consensus 285 N~l~~~~~~~~~~l~~L~~l~~~~---------~~~~~~~l~~l~~---~~~~~~~~~~~-----~~l~L~~n~~~~~~~ 347 (574)
|.+++..|..+..+++|+.++... .+..++.++.+++ ...+.+|.+.. +.+++++|++.+..|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 888888888888888888777332 3455667777777 44455555543 889999999998899
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc-cccccccCCCcccccccc-----------------
Q 041121 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK-VYYYTFVGPPYVHHYSFQ----------------- 409 (574)
Q Consensus 348 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~----------------- 409 (574)
..+..+++|++|++++|++++.+|..+..+++|+.+++++|.+. .++..+..........+.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 99999999999999999998888988999999999999888765 222222111111100000
Q ss_pred --------------------------CcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc
Q 041121 410 --------------------------DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463 (574)
Q Consensus 410 --------------------------~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 463 (574)
......+.+..+..+..+++|+.|||++|.+++.+|..|+.+++|++|+|++|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 000112334455567788999999999999999999999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~~ 543 (574)
+++.+|..|+++++|++|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++....+.|||++||.|+.
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~- 746 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP- 746 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 041121 544 KCRDEESAPGPGMTEGRDD 562 (574)
Q Consensus 544 ~c~~~~~~~~~~~~~~~~~ 562 (574)
.|..+.+..|+++.+.+..
T Consensus 747 ~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 747 RCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCSCC-------------
T ss_pred CCCCCccCCCCCCCCcccc
Confidence 8998888888887666543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-55 Score=479.84 Aligned_cols=526 Identities=26% Similarity=0.325 Sum_probs=368.6
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC------CCcCCcccEEEccCCcCCCCCCc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL------SNISSNFVSIDLSFNQLQGSIPD 76 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~L~~L~Ls~n~i~~~~~~ 76 (574)
.++.++.+++.|+.++++.+.+...+. .|..+++|++|+|++|.+++. ..-.++|++|++++|.+++..|.
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~l~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEECCC---CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred ccChhHhccCcccccCCcCCCcCCCch---hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 378889999999999999998876666 789999999999999998753 12237999999999999877777
Q ss_pred cc-cCCCCCCEEEccCCcCccCchhh---hhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCC
Q 041121 77 SS-QHMVYLEHLSLMFNELEGGIPKF---FGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGG 147 (574)
Q Consensus 77 ~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~ 147 (574)
.+ .++++|++|++++|.+++..|.. +.++. ++++|.+++... +..+++ |++|++++|++++.++.+.+
T Consensus 145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~-L~~L~Ls~n~l~~~~~~l~~ 221 (768)
T 3rgz_A 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN-LEFLDVSSNNFSTGIPFLGD 221 (768)
T ss_dssp CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTT-CCEEECCSSCCCSCCCBCTT
T ss_pred HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCc-CCEEECcCCcCCCCCccccc
Confidence 66 88999999999999999877766 44443 778888887443 367888 99999999999987777999
Q ss_pred CCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCc--------------ccCccccccCCchhhcCCCCCCeEec
Q 041121 148 FSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD--------------LANIQIKGKLPDLSSRFGTSNPGIDI 213 (574)
Q Consensus 148 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~~~lp~~~~~~~~~L~~L~l 213 (574)
+++|++|++++|.+++..|..|..+++|++|++++|.++. +..+.+.+.+|......+++|++|++
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 9999999999999998889999999999999999998762 11222223333332222344444444
Q ss_pred cCCcccCCCCCC---CCCCcEEEcCCCccccccc-ccccCCCCccEEECCCCCCCCCCCcchhcCC-CCcEEEccCcccc
Q 041121 214 SSNHFEGPIPPL---PSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSNLLSGKLPDCWWMFD-SLVILDLGNNSFS 288 (574)
Q Consensus 214 ~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 288 (574)
++|.+++.+|.. +++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.++
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 444444444332 3444445555554442222 2244444555555555554444444444444 4555555555544
Q ss_pred cCCCccccc--ccCcccccccc---------ccccCccceeeec---ccccccccccc-----ceEEecCceeccCCChh
Q 041121 289 GRIPDSMGF--LQNIQTQFTQQ---------QFNRRTVFIVWEL---LTTQTFESWEE-----RFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 289 ~~~~~~~~~--l~~L~~l~~~~---------~~~~~~~l~~l~~---~~~~~~~~~~~-----~~l~L~~n~~~~~~~~~ 349 (574)
+..|..+.. +++|+.++... .+..++.++.+++ ...+.+|.... +.+++++|.+.+..|..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 444444333 44444444211 3444555555555 33333443332 56666666666666666
Q ss_pred hcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc-cccccccCCCccccccccCcccccccCCCcccccccC
Q 041121 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK-VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLG 428 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (574)
+..+++|++|++++|++++..|..+.++++|+.+++++|.+. ..+..+...+.+..+.+.++.+. +..+..+..++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~ 538 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS---GNIPAELGDCR 538 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGGCT
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc---CcCCHHHcCCC
Confidence 666666777777777766666666666777777777766665 34444445555566665555432 34456677888
Q ss_pred cccEEEccCCcCCCCCcHhhh-----------------------------------------------------------
Q 041121 429 LIKSLELSSNKLNGAVPEEIM----------------------------------------------------------- 449 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~----------------------------------------------------------- 449 (574)
+|+.|++++|.+++.+|..+.
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 899999999988777765442
Q ss_pred -----------hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 450 -----------DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 450 -----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
.+++|++|+|++|++++.+|..|++++.|+.|+|++|++++.+|..|..+++|+.|||++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 356789999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c-chhcccCcccccCCCCCC
Q 041121 519 G-TQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 519 ~-~~~~~l~~~~l~~Np~~c 537 (574)
. ..++.++.+++++|+...
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEE
T ss_pred HHhCCCCCCEEECcCCcccc
Confidence 7 568889999999997554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6e-52 Score=452.94 Aligned_cols=488 Identities=18% Similarity=0.143 Sum_probs=314.9
Q ss_pred hhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCCC----cCCcccEEEccCCcCCCCCCccccCC
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLSN----ISSNFVSIDLSFNQLQGSIPDSSQHM 81 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~L~~L~Ls~n~i~~~~~~~~~~l 81 (574)
.|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.+.. -.++|++|++++|++++..+..|..+
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPE---LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTT---HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHH---HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 355555555555555555554 33 44555555555555555544421 12445555555555544444444445
Q ss_pred CCCCEEEccCCcCccCchhhhhccc-------------------------------CCCCCccccccccccccc------
Q 041121 82 VYLEHLSLMFNELEGGIPKFFGNML-------------------------------NLSDNKLAIIQNMSSGCL------ 124 (574)
Q Consensus 82 ~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------------~L~~n~l~~l~~~~~~~l------ 124 (574)
++|++|++++|.+++..|..+..+. ++++|.+++++...+..+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 5555555555444444333333322 445555554433333322
Q ss_pred ---------------------cccCcEEEccCCcccccCCC-CCCCCC--CCEEEccCcccccccchhhhccCCCCEEEc
Q 041121 125 ---------------------KNSLESLHLEVNHFTGPIPD-LGGFSS--MKRLYLSDNLLNGTINKSIGQIFKLEITCL 180 (574)
Q Consensus 125 ---------------------~~~L~~L~L~~n~l~~~~~~-l~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 180 (574)
+. |+.|++++|.+.+..+. |.+++. |++|++++|++++..+..|..+++|++|++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSC-CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hccccccChhhHHHHHHHhhhcc-ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 22 44555555555544444 554433 777777777776666666777777777777
Q ss_pred cCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC-----CC-------CCCCCCcEEEcCCCccccccccccc
Q 041121 181 SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP-----IP-------PLPSNSSFLNLSKNRFSRSISLCSI 248 (574)
Q Consensus 181 s~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~-----~~-------~~~~~L~~L~L~~n~i~~~~~~~~~ 248 (574)
++|.++.+. |.. +..+++|+.|++++|...+. +| ..+++|++|++++|.+.++.+..+.
T Consensus 280 ~~n~l~~~~--------~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 280 EYNNIQHLF--------SHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp CSCCBSEEC--------TTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred CCCccCccC--------hhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhc
Confidence 777665432 222 45566777777766544321 11 1257788888888888887777777
Q ss_pred CCCCccEEECCCCCCCC--CCCcchhcC--CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccc
Q 041121 249 SGSKLTYIDLSSNLLSG--KLPDCWWMF--DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTT 324 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~ 324 (574)
.+++|++|++++|.+.. .....|..+ ++|+.|++++|.+++..|..+..+++|
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L----------------------- 407 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL----------------------- 407 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC-----------------------
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC-----------------------
Confidence 88888888888876432 223344433 478888888888887777777777777
Q ss_pred ccccccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc---cccccccCC
Q 041121 325 QTFESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK---VYYYTFVGP 400 (574)
Q Consensus 325 ~~~~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~---~~~~~~~~~ 400 (574)
+.+++++|.+.+..+ ..+..+++|++|++++|++.+..+..|..++.|+.+++++|.+. ..+..+...
T Consensus 408 --------~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 408 --------EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp --------CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred --------CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 666666666655333 45666666666666666666566666666666666666666553 223334444
Q ss_pred CccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc--------HhhhhcCCCCEEeCCCCcCcccCCccc
Q 041121 401 PYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP--------EEIMDLVGLVALNLSRNHLTGQNSPKI 472 (574)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 472 (574)
..+..+.+.++.+. +..+..+..+++|++|++++|.+++..+ ..|.++++|++|+|++|+++.+.+..|
T Consensus 480 ~~L~~L~Ls~N~l~---~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 480 RNLTILDLSNNNIA---NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCCEEECCCCCCC---cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 45555555554433 3445567789999999999999975422 237899999999999999997777789
Q ss_pred cCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcc--hhcccCcccccCCCCCCCCCC
Q 041121 473 GQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT--QLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 473 ~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~~~l~~~~l~~Np~~c~~~l 541 (574)
.++++|+.|++++|+++++.+..|..+++|+.|++++|+|++..|... .++.++.+++++|||.|+|++
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999998888889999999999999999996555543 578999999999999999985
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-52 Score=449.63 Aligned_cols=478 Identities=19% Similarity=0.149 Sum_probs=343.6
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
.+|..+.. .+++|++++|.|+.+ +. +|.++++|++|++++|+++.+ ..-.++|++|++++|++++..|..
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNT---TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTT---TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChh---HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence 34555543 678888888888877 55 788888888888888887765 223478888888888888777778
Q ss_pred ccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC-CCCCCCCCCCEEEc
Q 041121 78 SQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI-PDLGGFSSMKRLYL 156 (574)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~l~~l~~L~~L~L 156 (574)
|..+++|++|++++|.+++..+. .+..+++ |++|++++|++++.. +.+.++++|++|++
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~-------------------~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFI-------------------PLHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGS-------------------CCTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred hcccccccEeeccccCcccCCcc-------------------hhccCCc-ccEEECCCCcccccCcccccCCcccCEEEc
Confidence 88888888888888887754444 4445555 666666666666533 33444666666666
Q ss_pred cCcccccccchhhhccCCCC--EEEccCCCCCcccCccccc---------------------------------------
Q 041121 157 SDNLLNGTINKSIGQIFKLE--ITCLSQNSLTDLANIQIKG--------------------------------------- 195 (574)
Q Consensus 157 ~~n~i~~~~~~~~~~l~~L~--~L~Ls~N~l~~l~~~~~~~--------------------------------------- 195 (574)
++|.+++..+..|..+++|+ .|++++|.++.+....+..
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 66666655566666666666 5666666665444332211
Q ss_pred -cCCchhhcCC--CCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCc
Q 041121 196 -KLPDLSSRFG--TSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD 269 (574)
Q Consensus 196 -~lp~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 269 (574)
.++...+..+ .+++.+++++|.+++..+.. +++|++|++++|.++.++. .+..+++|++|++++|.+++..|.
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchh
Confidence 0111111111 16778888888888766653 6788888888888885543 566788888888888888877777
Q ss_pred chhcCCCCcEEEccCcccccCCCc-ccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCC--
Q 041121 270 CWWMFDSLVILDLGNNSFSGRIPD-SMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKT-- 346 (574)
Q Consensus 270 ~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~-- 346 (574)
.+..+++|++|++++|.+.+..+. .+..+++| +.+++++|.+.+..
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENL-------------------------------RELDLSHDDIETSDCC 368 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC-------------------------------CEEECCSSCCCEEEES
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcC-------------------------------CEEECCCCccccccCc
Confidence 888888888888888888755544 47777777 66666666666544
Q ss_pred ChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccc--cccCCCccccccccCcccccccCCCcccc
Q 041121 347 PFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYY--TFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 347 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+..+..+++|++|++++|++++..+..|..+++|+.+++++|.+..... .+...+.+..+.+.++.+ .+..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~ 445 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL---DISSEQLF 445 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC---BTTCTTTT
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc---CCcCHHHH
Confidence 5556666666666666666666666666666666666666666543321 133444555555554433 23345567
Q ss_pred cccCcccEEEccCCcCCCC---CcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 425 STLGLIKSLELSSNKLNGA---VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..|.++++|++|++++|++++..|+.|..++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 7899999999999999752 3367899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 502 LSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 502 L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
| .|++++|++++..|.. ..++.++.+++++|||.|+|+.
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9 9999999999766664 5688999999999999999984
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-50 Score=432.59 Aligned_cols=459 Identities=18% Similarity=0.114 Sum_probs=295.9
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. ++|++|++++|.++.+ +. +|.++++|++|++++|+++.+ ..-.++|++|++++|.+++..|..|
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChh---hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 444443 5778888888887777 44 677788888888888877766 1223678888888888877777778
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc--ccccccccccccCcEEEccCCcccccCCC-CCCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI--IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~--l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~ 150 (574)
.++++|++|++++|.+.+..+..|+++. ++++|.+++ +|. .+.++++ |++|++++|++++..+. +..+++
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTN-LVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTT-CCEEECCSSCCCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCC-CCEEEccCCcceecChhhhhhhhc
Confidence 8888888888888877765555565554 566676664 455 6777776 77777777777766554 555544
Q ss_pred CC----EEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC-------------------
Q 041121 151 MK----RLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS------------------- 207 (574)
Q Consensus 151 L~----~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~------------------- 207 (574)
|+ +|++++|.+++..+..|... +|++|++++|.++.- ..|.. +..++.
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~-------~~~~~-~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN-------IMKTC-LQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH-------HHHHH-HHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh-------HHHHH-hccccccccccccccccccCCcccc
Confidence 43 67777777765555555444 677777777665410 00000 111111
Q ss_pred -------------CCeEec-cCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 208 -------------NPGIDI-SSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 208 -------------L~~L~l-~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
++.+++ ..+.+.+..|.. +++|+.|++++|.+..++ .+..+++|++|++++|.+. .+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~-~lp~-~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK-QFPT-L 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCS-SCCC-C
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCc-cccc-C
Confidence 111122 222333322222 344555555555554433 3334455555555555552 3332 2
Q ss_pred hcCCCCcEEEccCc----------------------ccccC--CCcccccccCccccccccccccCccceeeeccccccc
Q 041121 272 WMFDSLVILDLGNN----------------------SFSGR--IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 272 ~~l~~L~~L~L~~N----------------------~l~~~--~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
.+++|+.|++++| .+++. .+..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L-------------------------- 378 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL-------------------------- 378 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC--------------------------
T ss_pred -CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcc--------------------------
Confidence 4555555555555 44432 13333444444
Q ss_pred cccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccc
Q 041121 328 ESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 406 (574)
+.+++++|.+.+ .+..+..+++|++|++++|++.+..+ ..+..+++|+.+++++|.+.
T Consensus 379 -----~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 437 (606)
T 3vq2_A 379 -----RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK--------------- 437 (606)
T ss_dssp -----CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE---------------
T ss_pred -----cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC---------------
Confidence 455555555543 22444555555555555555554444 34555555555555554432
Q ss_pred cccCcccccccCCCcccccccCcccEEEccCCcCCC-CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG-AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
+..+..+..+++|++|++++|.+++ .+|..|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 438 -----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 438 -----------IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp -----------ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred -----------ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 2234456778999999999999986 3788899999999999999999999999999999999999999
Q ss_pred CcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhc-ccCcccccCCCCCCCCCCC
Q 041121 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQ-SFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 486 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~-~l~~~~l~~Np~~c~~~l~ 542 (574)
|++++..|..|..+++|+.|++++|+|+ .+|.. ..++ +++.+++++|||.|+|++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999998999999999999999999999 67765 3444 5899999999999999974
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-48 Score=423.10 Aligned_cols=532 Identities=20% Similarity=0.163 Sum_probs=345.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. +++++|++++|.++.+ +. +|.++++|++|++++|.++.+. .-.++|++|++++|.++...+.+|
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGG---GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHH---HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 454443 5788888888888887 44 6788888888888888887762 123788888888888886666678
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCC-C--CCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-L--GGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l--~~l~~ 150 (574)
..+++|++|++++|.+++..|..|.++. ++++|.+++++...+..+++ |++|++++|.+++..+. + ..+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc-CCEEEccCCcccccCHHHhhcccccc
Confidence 8888888888888888766556665543 55666666654445666666 66666666666655443 2 24466
Q ss_pred CCEEEccCcccccccchhhhccCCCCEEEccCCCCCc-------------------ccCccccccCCchhhcCC--CCCC
Q 041121 151 MKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD-------------------LANIQIKGKLPDLSSRFG--TSNP 209 (574)
Q Consensus 151 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------l~~~~~~~~lp~~~~~~~--~~L~ 209 (574)
|++|++++|.+++..+..|..+++|+.|+++++.+.. +..+.+.+..|.. +..+ ++|+
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~ 251 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLT 251 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCC
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hhccCcCCCC
Confidence 6666666666666666666555554444444433321 0001111111111 1222 2244
Q ss_pred eEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC-----CCC----cchhcCCCC
Q 041121 210 GIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG-----KLP----DCWWMFDSL 277 (574)
Q Consensus 210 ~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L 277 (574)
.|++++|.+++..+.. +++|++|++++|.+.+..+..+..+++|++|++++|...+ ..| ..|..+++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 5555555444433322 3444455555555544444444444455555554433221 111 134445555
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
++|++++|.+++..+..|..+++|+.++.......... +.............+.+++++|++.+..+..+..+++|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~---l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT---LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE---ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh---cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 55555555555544444555555544443221100000 000000000111228899999999999999999999999
Q ss_pred EEEccCCcccccCC-ccccccccCccccCCCCccccc-cccccCCCccccccccCcccccccCCCcccccccCcccEEEc
Q 041121 358 VLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVY-YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL 435 (574)
Q Consensus 358 ~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 435 (574)
+|++++|.+++.++ ..|.++++|+.+++++|.+... ...+...+.+..+.+.++..... +..+..+..+++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-TCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc-ccCCcccccCCCCCEEEC
Confidence 99999999987665 6899999999999999987543 33455566777777776654332 344566788999999999
Q ss_pred cCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC--------ccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 436 SSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS--------PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 436 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|.+++..+..|.++++|++|+|++|++++..+ ..|.++++|++|++++|+++.+.++.|.++++|+.|++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 9999998888889999999999999999986532 24788999999999999999777778999999999999
Q ss_pred cCCcCcccCCCc--chhcccCcccccCCCC-------------------CCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTG--TQLQSFNGSVYAGNPE-------------------LCGLPLPNKCRD 547 (574)
Q Consensus 508 s~N~l~~~~p~~--~~~~~l~~~~l~~Np~-------------------~c~~~l~~~c~~ 547 (574)
++|+++ .+|.. ..+..++.+++++|.. +.++|+.+.|..
T Consensus 568 s~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 568 GLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999 55554 3678899999998842 246778877864
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-48 Score=421.02 Aligned_cols=470 Identities=19% Similarity=0.165 Sum_probs=330.8
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
|.+|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.. ..-.++|++|++++|.++...+..+.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHED---TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hhHhccCccceEEECCCCccceeChh---hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 57899999999999999999988 66 899999999999999999876 23348999999999999987788899
Q ss_pred CCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccccccccccccccccCc--EEEccCCcccccCCCCCCCCCCC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLE--SLHLEVNHFTGPIPDLGGFSSMK 152 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~--~L~L~~n~l~~~~~~l~~l~~L~ 152 (574)
.+++|++|++++|.+.+..+..+..+. ++++|.+++++...+..+++ |+ .|++++|.+++..+......+|+
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEecCCCccCccChhHhhhcccc
Confidence 999999999999999875434443343 78899999976668889998 99 89999999998877743445666
Q ss_pred EEEccCcccc--------------------------cccchhhhccC--CCCEEEccCCCCCcccCccccccCCchhhcC
Q 041121 153 RLYLSDNLLN--------------------------GTINKSIGQIF--KLEITCLSQNSLTDLANIQIKGKLPDLSSRF 204 (574)
Q Consensus 153 ~L~L~~n~i~--------------------------~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~ 204 (574)
+|++++|... ...+..|..+. +|+.|++++|.++.++.. .+..
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~---------~~~~ 276 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN---------TFHC 276 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT---------TTTT
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH---------Hhcc
Confidence 6666655310 01122222222 566666666666543322 1455
Q ss_pred CCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEE
Q 041121 205 GTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILD 281 (574)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 281 (574)
+++|++|++++|.++..++.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 666777777777666433222 4666777777777766666666666777777777776654333 3466667777777
Q ss_pred ccCcccccCC--CcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEE
Q 041121 282 LGNNSFSGRI--PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVL 359 (574)
Q Consensus 282 L~~N~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L 359 (574)
+++|.+++.. +..+..+++| +.+++++|.+.+..+..+..+++|++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHL-------------------------------QSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTC-------------------------------CEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCCCccccccCcchhcccCCCC-------------------------------CEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 7777666544 5556666666 445555555554444455555555555
Q ss_pred EccCCcccccCCc-cccccccCccccCCCCcccccc-ccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 360 DLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYY-YTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 360 ~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
++++|++++..+. .+..+++|+.+++++|.+.... ..+...+.+..+.+.++.+..........+..+++|++|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 5555555433332 2444555555555555443321 1223334444444444433221112234567899999999999
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
|.+++..|..|.++++|++|+|++|++++..|..|.+++.| .|++++|++++..|+.+..+++|+.|++++|++.+..+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998889999999999999999999999999999999999 99999999999999999999999999999999997666
Q ss_pred Cc
Q 041121 518 TG 519 (574)
Q Consensus 518 ~~ 519 (574)
..
T Consensus 565 ~~ 566 (606)
T 3t6q_A 565 NI 566 (606)
T ss_dssp GH
T ss_pred cH
Confidence 43
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-49 Score=436.95 Aligned_cols=483 Identities=20% Similarity=0.199 Sum_probs=318.9
Q ss_pred CCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCC-C----CCcCCcccEEEccCCcCCCCCCccccCCCC
Q 041121 10 RLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRP-L----SNISSNFVSIDLSFNQLQGSIPDSSQHMVY 83 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~-~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~ 83 (574)
-.++|++|+|++|.|+.+ +. +|.++++|++|++++|.... + ..-.++|++|+|++|.+++..|..|..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTAS---SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSS---SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChh---HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 347899999999999988 66 89999999999999995432 2 233479999999999999888999999999
Q ss_pred CCEEEccCCcCccCchhh--hhccc-----CCCCCcccccc-ccccccccccCcEEEccCCcccccCCC-CCCC--CCCC
Q 041121 84 LEHLSLMFNELEGGIPKF--FGNML-----NLSDNKLAIIQ-NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGF--SSMK 152 (574)
Q Consensus 84 L~~L~L~~n~l~~~~~~~--~~~l~-----~L~~n~l~~l~-~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l--~~L~ 152 (574)
|++|+|++|.+++..|.. |..+. +|++|.+++++ ...|.++++ |++|++++|.+++..+. +..+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCCCcCCeeCHHHcccccCCccc
Confidence 999999999998766554 55443 55666666642 225667776 77777777777665554 5555 6777
Q ss_pred EEEccCcccccccchhhhccCC------CCEEEccCCCCCcccCccccccCC---------------------------c
Q 041121 153 RLYLSDNLLNGTINKSIGQIFK------LEITCLSQNSLTDLANIQIKGKLP---------------------------D 199 (574)
Q Consensus 153 ~L~L~~n~i~~~~~~~~~~l~~------L~~L~Ls~N~l~~l~~~~~~~~lp---------------------------~ 199 (574)
+|++++|.+.+..+..+..+++ |++|++++|.++......+...+. .
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~ 257 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence 7777777776666655555544 777777777655322111111100 0
Q ss_pred hhhcC--CCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcC
Q 041121 200 LSSRF--GTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMF 274 (574)
Q Consensus 200 ~~~~~--~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (574)
..+.. .++++.|++++|.+.+..+.. +++|+.|+|++|.+.++.+..|..+++|++|++++|.+++..+..|.++
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 00111 245666666666665544433 4566666666666666655556666666666666666665555666666
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
++|+.|++++|.+.+..+..|..+++| +.+++++|.+.+.. .++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~i~-----~~~ 381 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKL-------------------------------QTLDLRDNALTTIH-----FIP 381 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCC-------------------------------CEEEEETCCSCCCS-----SCC
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCC-------------------------------CEEECCCCCCCccc-----CCC
Confidence 666666666666665555555556666 44444444444211 134
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCcccccccc--ccCCCccccccccCcccccccCCCcccccccCcccE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYT--FVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKS 432 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 432 (574)
+|+.|++++|+++ .+|.. ...++.++++.|.+...... +...+.+..+.+.++.+..... ...+..+++|+.
T Consensus 382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~L~~ 455 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG--DQTPSENPSLEQ 455 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS--SSSSCSCTTCCB
T ss_pred CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc--ccccccCCcccc
Confidence 4444444444444 22221 22344444444444332211 1133344444444443332211 112345788999
Q ss_pred EEccCCcCC-----CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 433 LELSSNKLN-----GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 433 L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
|++++|.++ +..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+. ++|+.|++
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L 533 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI 533 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence 999999986 34456788999999999999999999999999999999999999999988777776 79999999
Q ss_pred cCCcCcccCCCcchhcccCcccccCCCCCCCCCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
++|+|++..|.. +..+..+++++|||.|+|++.
T Consensus 534 s~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 534 SRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred CCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 999999887764 458889999999999999863
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-46 Score=404.87 Aligned_cols=439 Identities=19% Similarity=0.162 Sum_probs=368.1
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC-C---CcCCcccEEEccCCcCCCCCCcccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL-S---NISSNFVSIDLSFNQLQGSIPDSSQ 79 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~~~L~~L~Ls~n~i~~~~~~~~~ 79 (574)
+..|.++++|++|++++|.++.+ +. +|.++++|++|++++|+++.+ + .-.++|++|++++|.+++..+..+.
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDK---AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred hhhccCCccCcEEeCCCCcccccCHH---HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 35789999999999999999998 66 799999999999999999887 2 2348999999999999988888899
Q ss_pred CCCCCCEEEccCCcCcc-Cchhhhhccc-----CCCCCccccccccccccccccCc----EEEccCCcccccCCCCCCCC
Q 041121 80 HMVYLEHLSLMFNELEG-GIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLE----SLHLEVNHFTGPIPDLGGFS 149 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~----~L~L~~n~l~~~~~~l~~l~ 149 (574)
++++|++|++++|.+.+ .+|..|+++. ++++|.+++++...+..+.+ |+ +|++++|.+++..+......
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~~l~~L~l~~n~l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLNPIDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-CTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-cccccceeeccCCCcceeCcccccCc
Confidence 99999999999999986 4688888776 78899999977668888877 65 89999999998777733344
Q ss_pred CCCEEEccCccccc-ccchh--------------------------------------------------------hhcc
Q 041121 150 SMKRLYLSDNLLNG-TINKS--------------------------------------------------------IGQI 172 (574)
Q Consensus 150 ~L~~L~L~~n~i~~-~~~~~--------------------------------------------------------~~~l 172 (574)
+|++|++++|.+.+ ..+.. |..+
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 89999999987641 12222 5556
Q ss_pred CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-CCCCcEEEcCCCcccccccccccCCC
Q 041121 173 FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL-PSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 173 ~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
++|+.|++++|.++.++ .+..+++|++|++++|.+ +.+|.. +++|++|++++|...+.. .+..++
T Consensus 285 ~~L~~L~l~~~~~~~l~-----------~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-----------DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp TTCSEEEEESCCCCCCC-----------CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred CCCCEEEecCccchhhh-----------hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCC
Confidence 67777777777766433 146678899999999998 455543 788999999999554433 566889
Q ss_pred CccEEECCCCCCCCC--CCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccc
Q 041121 252 KLTYIDLSSNLLSGK--LPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+|++|++++|.+++. .+..+..+++|++|++++|.+++ .|..+..+++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L---------------------------- 401 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL---------------------------- 401 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC----------------------------
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC----------------------------
Confidence 999999999999865 37889999999999999999985 55788888888
Q ss_pred cccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 330 WEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
+.+++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.++++|+.+++++|.+...
T Consensus 402 ---~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 463 (606)
T 3vq2_A 402 ---QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--------------- 463 (606)
T ss_dssp ---CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---------------
T ss_pred ---CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---------------
Confidence 899999999998877 6889999999999999999988999999999999999999876520
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
..+..+..+++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|++++|++
T Consensus 464 ----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 464 ----------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ----------chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 1233456788999999999999988899999999999999999999999899999999999999999999
Q ss_pred cccCCCCccCCC-CCCEEeccCCcCcccCCCc
Q 041121 489 VGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 489 ~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~ 519 (574)
+ .+|..+..++ +|+.|++++|++.+..+..
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred c-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9 5556688887 5999999999999766654
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-45 Score=389.51 Aligned_cols=473 Identities=21% Similarity=0.174 Sum_probs=307.4
Q ss_pred CcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 14 LRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 14 L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
.+..+.++.+++.+|. .+. +++++|++++|+++.+. .-.++|++|++++|++++..+.+|.++++|++|++
T Consensus 9 ~~~~~c~~~~l~~ip~---~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYKIPD---NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSSCCS---SSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccccCC---Ccc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence 4578888888888876 343 57999999999988772 22479999999999999888888999999999999
Q ss_pred cCCcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCccccc-CCC-CCCCCCCCEEEccCcccc
Q 041121 90 MFNELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-IPD-LGGFSSMKRLYLSDNLLN 162 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~L~~n~i~ 162 (574)
++|++++..|..|.++. ++++|.++.++...+..+++ |++|++++|.+++. .|. |.++++|++|++++|+++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCcccccccc-ccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 99999866666665543 55566666665555666666 66666666666642 233 666666666666666666
Q ss_pred cccchhhhccCCC----CEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC-----------------
Q 041121 163 GTINKSIGQIFKL----EITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP----------------- 221 (574)
Q Consensus 163 ~~~~~~~~~l~~L----~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~----------------- 221 (574)
+..+..|..+++| +.|++++|.++.+....+ ... +|+.+++++|.....
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~---------~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT---------TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred eecHHHccchhccchhhhhcccCCCCceecCHHHh---------ccC-cceeEecccccccccchhhhhcCccccceeee
Confidence 5555666666666 566666666654433221 111 455555554421100
Q ss_pred -------------CC-CCC-----CCCcEEEcCCC-cccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 222 -------------IP-PLP-----SNSSFLNLSKN-RFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 222 -------------~~-~~~-----~~L~~L~L~~n-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
++ ..+ ..++.++++++ .+.+..+..+..+++|++|++++|.++ ..|..+..+ +|+.|+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLE 310 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEE
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEe
Confidence 00 000 01223333333 333334444455566666666666665 355555555 666666
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.+. .+|. ..+++| +.+++++|.+.+..+. ..+++|++|++
T Consensus 311 l~~n~~~-~l~~--~~l~~L-------------------------------~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 311 LVNCKFG-QFPT--LKLKSL-------------------------------KRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp EESCBCS-SCCB--CBCSSC-------------------------------CEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred eccCccc-ccCc--cccccc-------------------------------CEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 6666665 3332 234444 4444444444433322 34444555555
Q ss_pred cCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc
Q 041121 362 SLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK 439 (574)
Q Consensus 362 ~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 439 (574)
++|.+++.. +..+.++++|+.+++++|.+......+...+.+..+.+.++.+... .....+..+++|++|++++|.
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC--TTSCTTTTCTTCCEEECTTSC
T ss_pred cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc--cchhhhhcCCCCCEEeCcCCc
Confidence 555444322 3334444445555544444443333333334444444443332221 112346678999999999999
Q ss_pred CCCCCcHhhhhcCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 440 LNGAVPEEIMDLVGLVALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 440 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
+.+..|..|.++++|++|++++|+++ +..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 99888999999999999999999997 56888999999999999999999999899999999999999999999966665
Q ss_pred c-chhcccCcccccCCCCCCCCCCC
Q 041121 519 G-TQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 519 ~-~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
. ..++.++.+++++||+.|+|+..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhhcccCCcEEEecCCcccCCCcch
Confidence 4 46789999999999999999864
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-45 Score=391.06 Aligned_cols=461 Identities=20% Similarity=0.174 Sum_probs=372.5
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccc
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSS 78 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~ 78 (574)
+|..+. +++++|++++|.++.+ +. +|.++++|++|++++|+++.+. .-.++|++|++++|.++...+.+|
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTT---TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChh---HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence 454443 4799999999999888 55 7899999999999999988762 224799999999999988888899
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCcccc--ccccccccccccCcEEEccCCcccccCCC-CCCCCC
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLAI--IQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSS 150 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~~--l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~ 150 (574)
..+++|++|++++|.+++..+..|+.+. ++++|.++. +|. .+.++++ |++|++++|++++..+. +..+++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTT-CCEEECTTSCCCEECGGGGHHHHT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCC-CCEEeCcCCccceecHHHccchhc
Confidence 9999999999999999865554566654 778888887 566 8889998 99999999999887766 777777
Q ss_pred C----CEEEccCcccccccchhhhccCCCCEEEccCCCCC-------------------------------cccCc----
Q 041121 151 M----KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT-------------------------------DLANI---- 191 (574)
Q Consensus 151 L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------------------~l~~~---- 191 (574)
| ++|++++|.+.+..+..|... +|+.|++++|... .++..
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 7 899999999998888887766 7999988887321 11111
Q ss_pred ---------------cccccCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCcc
Q 041121 192 ---------------QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLT 254 (574)
Q Consensus 192 ---------------~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~ 254 (574)
.+.+..|.. +..+++|+.|++++|.+.+..+.. . +|++|++++|.+..++. ..+++|+
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~ 328 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLK 328 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCC
T ss_pred ccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc---ccccccC
Confidence 223344554 677899999999999998643322 5 89999999999986554 3678999
Q ss_pred EEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCC--CcccccccCccccccccccccCccceeeecccccccccccc
Q 041121 255 YIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRI--PDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEE 332 (574)
Q Consensus 255 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 332 (574)
+|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L------------------------------- 375 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL------------------------------- 375 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC-------------------------------
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc-------------------------------
Confidence 999999998866554 68899999999999998654 5677788888
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+..
T Consensus 376 ~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------------------- 435 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV------------------- 435 (570)
T ss_dssp CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-------------------
T ss_pred CEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-------------------
Confidence 8899999999876555 8899999999999999987665 568899999999998887642
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 490 (574)
..+..+..+++|++|++++|.++ +.+|..|..+++|++|+|++|++++..|..|.++++|++|++++|++++
T Consensus 436 -------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 436 -------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp -------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -------cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 22334567889999999999997 4688899999999999999999999989999999999999999999999
Q ss_pred cCCCCccCCCCCCEEeccCCcCcccCCCcchh-cccC--cccccCCCCCCC
Q 041121 491 GIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQL-QSFN--GSVYAGNPELCG 538 (574)
Q Consensus 491 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~l~--~~~l~~Np~~c~ 538 (574)
..++.|..+++|+.|++++|++++.+|....+ ..+. ...+.+.| .|.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~ 558 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 558 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBT
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhC
Confidence 88899999999999999999999988875333 2222 23355555 554
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-45 Score=392.37 Aligned_cols=430 Identities=20% Similarity=0.162 Sum_probs=260.0
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
++|++|++++|.++.+ +. +|..+++|++|++++|+++.+. .-.++|++|++++|++++..+..|+.+++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEECSS---TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccChh---hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 5677777777777666 44 5677777777777777666552 12256777777777776666666677777777
Q ss_pred EEccCCcCccC-chhhhhcccCCCCCccccccccccccccccCcEEEccCCc-ccccCCC-CCCCCCCCEEEccCccccc
Q 041121 87 LSLMFNELEGG-IPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH-FTGPIPD-LGGFSSMKRLYLSDNLLNG 163 (574)
Q Consensus 87 L~L~~n~l~~~-~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~-l~~~~~~-l~~l~~L~~L~L~~n~i~~ 163 (574)
|++++|.+++. .|. .+..+++ |++|++++|+ +....+. |.++++|++|++++|++++
T Consensus 103 L~Ls~n~l~~~~~~~-------------------~~~~l~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 103 LNLMGNPYQTLGVTS-------------------LFPNLTN-LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EECTTCCCSSSCSSC-------------------SCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred EECCCCcccccchhh-------------------hhhccCC-ccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 77777766642 233 4555555 6666666665 3333333 6666666666666666666
Q ss_pred ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------CCCCCCCcEEEcCCC
Q 041121 164 TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------PPLPSNSSFLNLSKN 237 (574)
Q Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~L~~L~L~~n 237 (574)
..|..+..+++|++|++++|.+..+ |...+..+++|++|++++|.+++.. .....+|+.|++++|
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFL---------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTH---------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred cChhhhhccccCceEecccCccccc---------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 6666666666666666666654422 2222344566666666666666531 112455666666666
Q ss_pred cccccccc----cccCCCCccEEECCCCCCCCCC------CcchhcCCCCcEEEccCccccc------------------
Q 041121 238 RFSRSISL----CSISGSKLTYIDLSSNLLSGKL------PDCWWMFDSLVILDLGNNSFSG------------------ 289 (574)
Q Consensus 238 ~i~~~~~~----~~~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~------------------ 289 (574)
.+.+..+. .+..+++|+.+++++|.+.+.. ...+..+++|+.|+++++.+..
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 65543221 1223455556666555543211 1123344455555555544432
Q ss_pred ----------CCCccc-ccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCCh---hhcCCCC
Q 041121 290 ----------RIPDSM-GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPF---QLCQFAF 355 (574)
Q Consensus 290 ----------~~~~~~-~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~---~~~~~~~ 355 (574)
.+|..+ ..+++| +.+++++|++.+..+. .+..+++
T Consensus 314 ~L~l~~n~l~~ip~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 314 RITVENSKVFLVPCSFSQHLKSL-------------------------------EFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp EEEEESSCCCCCCHHHHHHCTTC-------------------------------CEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred EEEeccCccccCCHHHHhcCccc-------------------------------cEEEccCCccccccccchhhhhcccc
Confidence 222222 233333 4455555555443321 2344455
Q ss_pred CCEEEccCCcccccCC--ccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEE
Q 041121 356 LQVLDLSLNNISGKIP--KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSL 433 (574)
Q Consensus 356 L~~L~L~~n~l~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 433 (574)
|++|++++|++++..+ ..+..+++|+.+++++|.+. . .+..+..+++|++|
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----------------------~----lp~~~~~~~~L~~L 415 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-----------------------P----MPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-----------------------C----CCSCCCCCTTCCEE
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-----------------------c----CChhhcccccccEE
Confidence 5555555555543221 23444555555555554433 1 12234567889999
Q ss_pred EccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 434 ELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 434 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
++++|.++ .+|..+ .++|++|+|++|++++.. ..+++|++|++++|+++ .+|. ...+++|+.|++++|+++
T Consensus 416 ~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 416 NLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 99999997 445443 268999999999998643 57899999999999999 4555 467899999999999999
Q ss_pred ccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 514 GKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 514 ~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+..|.. ..++.++.+++++|||.|+|+
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 777764 568889999999999999998
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-44 Score=385.80 Aligned_cols=422 Identities=16% Similarity=0.162 Sum_probs=295.9
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC---C---c----------------------------
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS---N---I---------------------------- 56 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~---~---~---------------------------- 56 (574)
.+++.|+|++++++.. |. +|+++++|++|+|++|.+.... + .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~---~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPD---AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECG---GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCCh---HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 5899999999999877 76 8999999999999999651110 0 0
Q ss_pred ----C------------------CcccEEEc--cCCcCCCCCCccccCCCCCCEEEccCCcCccC-chhhhhcccCCCCC
Q 041121 57 ----S------------------SNFVSIDL--SFNQLQGSIPDSSQHMVYLEHLSLMFNELEGG-IPKFFGNMLNLSDN 111 (574)
Q Consensus 57 ----~------------------~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~n 111 (574)
. ..++.+.+ ..|++++ +|..++++++|++|+|++|.+++. .+.... .-...
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---~~~~~ 233 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE---NENSE 233 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---CTTSH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc---ccccc
Confidence 0 01111111 1578887 888999999999999999999863 110000 00000
Q ss_pred cccc-ccccccc--cccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc-ccc-ccchhhhcc------CCCCEEE
Q 041121 112 KLAI-IQNMSSG--CLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL-LNG-TINKSIGQI------FKLEITC 179 (574)
Q Consensus 112 ~l~~-l~~~~~~--~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~ 179 (574)
...+ +|. .+. ++++ |++|++++|++.+..|. +.++++|++|++++|+ +++ .+|..+..+ ++|++|+
T Consensus 234 ~~~~~ip~-~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 234 YAQQYKTE-DLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp HHHHHTTS-CCCGGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred hhcccCch-hhhhcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 1111 344 556 8888 99999999999988887 9999999999999998 998 789888887 9999999
Q ss_pred ccCCCCCcccCccccccCCc-hhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCC-ccE
Q 041121 180 LSQNSLTDLANIQIKGKLPD-LSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSK-LTY 255 (574)
Q Consensus 180 Ls~N~l~~l~~~~~~~~lp~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~-L~~ 255 (574)
+++|.++. +|. ..+..+++|+.|++++|.++|.+|.. +++|++|++++|.+..+ +..+..+++ |++
T Consensus 312 L~~n~l~~---------ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~ 381 (636)
T 4eco_A 312 IGYNNLKT---------FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI-PANFCGFTEQVEN 381 (636)
T ss_dssp CCSSCCSS---------CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCE
T ss_pred CCCCcCCc---------cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccc-cHhhhhhcccCcE
Confidence 99999874 444 12678899999999999999877744 68899999999999954 445778888 999
Q ss_pred EECCCCCCCCCCCcchhcCC--CCcEEEccCcccccCCCcccc-------cccCccccccccccccCccceeeecccccc
Q 041121 256 IDLSSNLLSGKLPDCWWMFD--SLVILDLGNNSFSGRIPDSMG-------FLQNIQTQFTQQQFNRRTVFIVWELLTTQT 326 (574)
Q Consensus 256 L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~ 326 (574)
|++++|.++ .+|..+..+. +|+.|++++|.+++..|..+. .+++|
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L------------------------- 435 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV------------------------- 435 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE-------------------------
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC-------------------------
Confidence 999999999 6787777655 899999999999998888887 66667
Q ss_pred ccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc-------cCccccCCCCccccccccccC
Q 041121 327 FESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT-------AMTQERSSDPTIKVYYYTFVG 399 (574)
Q Consensus 327 ~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~l~l~~~~~~~~~~~~~~ 399 (574)
+.+++++|.+....+..+..+++|++|+|++|+++...+..+.... +|+.+++++|.+..++..+.
T Consensus 436 ------~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~- 508 (636)
T 4eco_A 436 ------SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR- 508 (636)
T ss_dssp ------EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS-
T ss_pred ------CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh-
Confidence 8899999999976666677799999999999999843333343322 55555555554431111000
Q ss_pred CCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeC------CCCcCcccCCcccc
Q 041121 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNL------SRNHLTGQNSPKIG 473 (574)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~ 473 (574)
...+++|+.|++++|.+++ +|..+..+++|++|+| ++|++.+.+|..+.
T Consensus 509 ------------------------~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 509 ------------------------ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp ------------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ------------------------hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 0134455555555555553 4555555555555555 33444455555555
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
++++|++|++++|++. .+|..+. ++|+.|++++|++.
T Consensus 564 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 564 LCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 5555555555555553 3344333 45555555555554
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=395.66 Aligned_cols=470 Identities=18% Similarity=0.127 Sum_probs=315.6
Q ss_pred cEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCC-CCccccCCCCCCEEEc
Q 041121 15 RYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGS-IPDSSQHMVYLEHLSL 89 (574)
Q Consensus 15 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L 89 (574)
+..+.++++++.+|. -.++|++|+|++|.++.+ ..-.++|++|++++|..... .|.+|.++++|++|+|
T Consensus 7 ~~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 467888888888864 347899999999998876 22337999999999955444 4888999999999999
Q ss_pred cCCcCccCchhhhhccc-----CCCCCcccc-ccc-cccccccccCcEEEccCCcccccCCC--CCCCCCCCEEEccCcc
Q 041121 90 MFNELEGGIPKFFGNML-----NLSDNKLAI-IQN-MSSGCLKNSLESLHLEVNHFTGPIPD--LGGFSSMKRLYLSDNL 160 (574)
Q Consensus 90 ~~n~l~~~~~~~~~~l~-----~L~~n~l~~-l~~-~~~~~l~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~L~~n~ 160 (574)
++|.+.+..|..|.++. +|++|.+++ ++. ..+..+++ |++|++++|.+++..+. |.++++|++|++++|.
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS-CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC-CCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 99999987788887765 667787776 333 34778887 88888888888776543 7888888888888888
Q ss_pred cccccchhhhcc--CCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC-------------
Q 041121 161 LNGTINKSIGQI--FKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL------------- 225 (574)
Q Consensus 161 i~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~------------- 225 (574)
+++..+..|..+ ++|+.|++++|.+.......+. ..+.. +. ...|+.|++++|.+.+..+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~-~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNP-FR-NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCT-TT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCc-cc-cCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 887777777777 7888888888877642211111 01100 11 124888888888776544322
Q ss_pred ----------------------------CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 226 ----------------------------PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 226 ----------------------------~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
.++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|.++++|
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 316 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC
Confidence 1345555555555555555455555555555555555554445555555555
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
++|++++|.+++..+..+..+++| +.+++++|.+....+..|..+++|+
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKV-------------------------------AYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTC-------------------------------CEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred CEEECCCCCCCccCHHHhcCCCCC-------------------------------CEEECCCCCCCccChhhhcCCCCCC
Confidence 555555555554445555555555 5556666665555555555566666
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|+|++|.+++. ..+++|+.+++++|.+..++.. ...+..+.+..+.+.... ....+..+++|+.|++++
T Consensus 366 ~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~--~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 366 TLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp EEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSST--THHHHTTCTTCCEEEEES
T ss_pred EEECCCCCCCcc-----cCCCCcchhccCCCCccccccc---ccccceeecccCccccCc--hhhhhhcCCccceeeCCC
Confidence 666666655521 1144555555555555433211 112223333333322221 112345789999999999
Q ss_pred CcCCCCCcH-hhhhcCCCCEEeCCCCcCc-----ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCc
Q 041121 438 NKLNGAVPE-EIMDLVGLVALNLSRNHLT-----GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 438 n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
|.+++..+. .+..+++|++|+|++|.++ +..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 999855443 4567899999999999997 3445678899999999999999999999999999999999999999
Q ss_pred CcccCCCcchhcccCcccccCCCCC
Q 041121 512 LSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 512 l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|++..|.... ..++.+++++|...
T Consensus 516 l~~l~~~~~~-~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 516 LTVLSHNDLP-ANLEILDISRNQLL 539 (844)
T ss_dssp CSSCCCCCCC-SCCCEEEEEEECCC
T ss_pred CCccChhhhh-ccccEEECCCCcCC
Confidence 9954444333 78889999988654
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-43 Score=379.63 Aligned_cols=442 Identities=19% Similarity=0.175 Sum_probs=313.9
Q ss_pred CCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 13 SLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 13 ~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
++++|||++|.|+.+ +. +|.++++|++|+|++|+|+.+. .-.++|++|+|++|+++...+..|.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~---~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY---SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHH---HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 678888888888777 44 6778888888888888777662 223677788888877776666777777788888
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC-CC-CCCCCCCCEEEccCccccccc
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~ 165 (574)
++++|++++..+. +|+++++ |++|++++|.++... +. +..+++|++|++++|++++..
T Consensus 130 ~Ls~N~l~~l~~~-------------------~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 130 VAVETNLASLENF-------------------PIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp ECTTSCCCCSTTC-------------------CCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ECCCCcCCCCChh-------------------hhhcCcc-cCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 7777777754433 4556666 777777777666432 33 566677777777777766666
Q ss_pred chhhhccCCC----CEEEccCCCCCcccCccccc----------------------------------------------
Q 041121 166 NKSIGQIFKL----EITCLSQNSLTDLANIQIKG---------------------------------------------- 195 (574)
Q Consensus 166 ~~~~~~l~~L----~~L~Ls~N~l~~l~~~~~~~---------------------------------------------- 195 (574)
+..|..++++ ..++++.|.++.++...+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 6665554433 24556666555332211100
Q ss_pred ---------------------------cCCchhhcCCCCCCeEeccCCcccCCCCC-CCCCCcEEEcCCCcccccccccc
Q 041121 196 ---------------------------KLPDLSSRFGTSNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSISLCS 247 (574)
Q Consensus 196 ---------------------------~lp~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~L~~n~i~~~~~~~~ 247 (574)
..+.. +.....++.+.+..+.+....+. ....++.|++.+|.+......
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhh-hhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc--
Confidence 00000 22334455556555555443221 256889999999988776553
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccccc--CCCcccccccCccccccccccccCccceeeeccccc
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG--RIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQ 325 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~ 325 (574)
.+..|+.+++..|.+.... .+..+++|+.+++++|.+.. ..+..+..+.++
T Consensus 347 -~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L------------------------ 399 (635)
T 4g8a_A 347 -KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL------------------------ 399 (635)
T ss_dssp -BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC------------------------
T ss_pred -cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhh------------------------
Confidence 3578889999998876432 34578899999999998863 344455556666
Q ss_pred cccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccc
Q 041121 326 TFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404 (574)
Q Consensus 326 ~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 404 (574)
+.+++..+.+... +..+..+++|+.++++.++.....+ ..|..+..++.++++.|.+...
T Consensus 400 -------~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~----------- 460 (635)
T 4g8a_A 400 -------KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------- 460 (635)
T ss_dssp -------CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-----------
T ss_pred -------hhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccc-----------
Confidence 7777777777643 3456778888888888877664443 4577778888888777765422
Q ss_pred cccccCcccccccCCCcccccccCcccEEEccCCcCC-CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeC
Q 041121 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN-GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDL 483 (574)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 483 (574)
.+..+..++.|+.|++++|.+. ...|..|..+++|++|+|++|+++++.|..|.++++|++|+|
T Consensus 461 ---------------~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 461 ---------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp ---------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------------cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 2233456778899999999753 456788999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcch-h-cccCcccccCCCCCCCCCC
Q 041121 484 SRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQ-L-QSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 484 ~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~-~~l~~~~l~~Np~~c~~~l 541 (574)
++|+|++..+..|.++++|++|+|++|+|++..|.... + .+++.+++++|||.|+|.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999998899999999999999999999977777643 3 6789999999999999985
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-43 Score=374.98 Aligned_cols=350 Identities=18% Similarity=0.186 Sum_probs=276.1
Q ss_pred hcCCCCCCcEEEccCCCCCC------------------CC---C--cCCcccEEEccCCcCCCCCCccccCCCCCCEEEc
Q 041121 33 VIGKLHSLKTLTSHSCYLRP------------------LS---N--ISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL 89 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~------------------~~---~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 89 (574)
+|+++++|++|++++|.+++ ++ . -.++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 67778888888888888777 41 1 2367888888888877778888888888888888
Q ss_pred cCCc-Ccc-CchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCccccccc
Q 041121 90 MFNE-LEG-GIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 90 ~~n~-l~~-~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
++|+ +++ .+|..++.+. .+..+++ |++|++++|+++.++. .+.++++|++|++++|++.+.+
T Consensus 281 s~n~~l~~~~lp~~~~~L~-------------~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALA-------------DAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHH-------------HSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred cCCCCCccccchHHHHhhh-------------ccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 8887 776 6776555431 2334477 9999999999995555 4889999999999999999888
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC-CCeEeccCCcccCCCCCC-----CCCCcEEEcCCCcc
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS-NPGIDISSNHFEGPIPPL-----PSNSSFLNLSKNRF 239 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~-L~~L~l~~n~l~~~~~~~-----~~~L~~L~L~~n~i 239 (574)
| .|..+++|++|++++|.++. +|.. +..+++ |+.|++++|.++ .+|.. +++|++|++++|.+
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~~---------lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQITE---------IPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEEE---------CCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred h-hhCCCCCCCEEECCCCcccc---------ccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 8 89999999999999998773 3443 566777 999999999998 44543 23799999999999
Q ss_pred ccccccccc-------CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccccc-------Cccccc
Q 041121 240 SRSISLCSI-------SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQ-------NIQTQF 305 (574)
Q Consensus 240 ~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~l~ 305 (574)
.+..+..+. .+++|++|++++|.++...+..+..+++|++|++++|.++...+..+.... +|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L---- 490 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL---- 490 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC----
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc----
Confidence 988776666 678999999999999965555677799999999999999943333443322 55
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhc--CCCCCCEEEccCCcccccCCccccccccCccc
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC--QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 383 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 383 (574)
+.+++++|++. .+|..+. .+++|++|+|++|++++ +|..+..+++|
T Consensus 491 ---------------------------~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L--- 538 (636)
T 4eco_A 491 ---------------------------TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL--- 538 (636)
T ss_dssp ---------------------------CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC---
T ss_pred ---------------------------cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC---
Confidence 88999999998 5667776 88999999999999986 67666555554
Q ss_pred cCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEc------cCCcCCCCCcHhhhhcCCCCEE
Q 041121 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLEL------SSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L 457 (574)
+.|++ ++|.+.+.+|..+..+++|++|
T Consensus 539 -----------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 539 -----------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp -----------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred -----------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 66766 5688888999999999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPS 494 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 494 (574)
+|++|+++ .+|..+. ++|++|++++|++......
T Consensus 572 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 572 QIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp ECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred ECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHH
Confidence 99999995 6666655 8999999999999865433
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-44 Score=377.89 Aligned_cols=452 Identities=18% Similarity=0.142 Sum_probs=308.0
Q ss_pred cEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 041121 15 RYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLM 90 (574)
Q Consensus 15 ~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 90 (574)
++||+++|+++.+|. .+. ++|++|++++|+++.+. .-.++|++|++++|++++..|..|..+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~---~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK---DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCC---SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccc---ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 578999999998866 444 88999999999888772 234788899999998887778888889999999998
Q ss_pred CCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc-CCC-CCCCCCCCEEEccCcccccccchh
Q 041121 91 FNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-IPD-LGGFSSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~L~~n~i~~~~~~~ 168 (574)
+|+++ .+|. . .+++ |++|++++|++++. .|. |+++++|++|++++|.+.+ ..
T Consensus 78 ~N~l~-~lp~-------------------~--~l~~-L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 78 HNKLV-KISC-------------------H--PTVN-LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp SSCCC-EEEC-------------------C--CCCC-CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred CCcee-ecCc-------------------c--ccCC-ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh
Confidence 88887 3442 2 4566 88888888888763 344 8888888888888888864 45
Q ss_pred hhccCCC--CEEEccCCCC--CcccCccccccCCchhhcCCC-CCCeEeccCCcccCCCCCC----CCCCcEEEcCCCc-
Q 041121 169 IGQIFKL--EITCLSQNSL--TDLANIQIKGKLPDLSSRFGT-SNPGIDISSNHFEGPIPPL----PSNSSFLNLSKNR- 238 (574)
Q Consensus 169 ~~~l~~L--~~L~Ls~N~l--~~l~~~~~~~~lp~~~~~~~~-~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~- 238 (574)
|..+++| ++|++++|.+ ... .|.. +..+. ....+++++|.+.+.++.. +++|+.+++++|.
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~--------~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKE--------DPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSC--------CTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred ccccccceeeEEEeeccccccccc--------cccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 6667777 8888888876 221 1111 11111 1223455556555544432 4556666666664
Q ss_pred ------ccccccccccCCCCccEEECCCCCCCCCCCcch---hcCCCCcEEEccCcccccCCCccc-----ccccCcccc
Q 041121 239 ------FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW---WMFDSLVILDLGNNSFSGRIPDSM-----GFLQNIQTQ 304 (574)
Q Consensus 239 ------i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~l 304 (574)
+.+..+ .+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.+|..+ ..+++|+.+
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l 281 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence 433333 44455666666666655543211111 013456666666666665555554 444444333
Q ss_pred ccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCcccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 384 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 384 (574)
+.....-..+. ......++....+.+++++|.+.... .+..+++|++|++++|++++..|..+..+++|+.++
T Consensus 282 ~l~~n~~~~p~-----~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 354 (520)
T 2z7x_B 282 QVVSDVFGFPQ-----SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354 (520)
T ss_dssp EEEECCCCSCT-----HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEE
T ss_pred cccccceecch-----hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEE
Confidence 21110000000 00000000001188899999876533 125788999999999999988888899999999999
Q ss_pred CCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH-hhhhcCCCCEEeCCCCc
Q 041121 385 SSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE-EIMDLVGLVALNLSRNH 463 (574)
Q Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~ 463 (574)
+++|.+..++. .+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|+
T Consensus 355 L~~N~l~~l~~------------------------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 355 LQMNQLKELSK------------------------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCBHHH------------------------HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ccCCccCcccc------------------------chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99888753211 112345688899999999999874665 48889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+++..+..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+|+ .+|.. ..++.++.+++++||+.|+|++
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 9877776654 79999999999999 66776779999999999999999 67764 4578899999999999999986
Q ss_pred C
Q 041121 542 P 542 (574)
Q Consensus 542 ~ 542 (574)
.
T Consensus 487 ~ 487 (520)
T 2z7x_B 487 I 487 (520)
T ss_dssp H
T ss_pred h
Confidence 3
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-42 Score=379.32 Aligned_cols=448 Identities=16% Similarity=0.137 Sum_probs=340.7
Q ss_pred CCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEc-cCCCCCCC--CC---c----------------------------
Q 041121 12 HSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTS-HSCYLRPL--SN---I---------------------------- 56 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l-~~n~l~~~--~~---~---------------------------- 56 (574)
.+++.|+|++++++.. |. +|+++++|++|+| ++|.+.+. .. .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~---~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD---AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCEEEECG---GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCCCcCch---HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 5799999999999877 77 8999999999999 77754332 00 0
Q ss_pred ----------------------CCcccEEEcc--CCcCCCCCCccccCCCCCCEEEccCCcCccC-chhhhhcccCCCCC
Q 041121 57 ----------------------SSNFVSIDLS--FNQLQGSIPDSSQHMVYLEHLSLMFNELEGG-IPKFFGNMLNLSDN 111 (574)
Q Consensus 57 ----------------------~~~L~~L~Ls--~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~n 111 (574)
...++.+.+. .|++++ +|..+.++++|++|+|++|.+++. ++..+. ..+.|
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---~~s~n 475 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---DANSD 475 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---CTTSH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---ccccc
Confidence 0122333333 377876 889999999999999999999872 221111 11223
Q ss_pred cccc-ccccccc--cccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc-ccc-ccchhhhccC-------CCCEE
Q 041121 112 KLAI-IQNMSSG--CLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL-LNG-TINKSIGQIF-------KLEIT 178 (574)
Q Consensus 112 ~l~~-l~~~~~~--~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~-i~~-~~~~~~~~l~-------~L~~L 178 (574)
.+++ +|. .+. ++++ |++|+|++|++.+.+|. |.++++|++|++++|+ +++ .+|..+..++ +|++|
T Consensus 476 ~~~g~iP~-~l~f~~L~~-L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 476 YAKQYENE-ELSWSNLKD-LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HHHHHTTS-CCCGGGCTT-CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccCCh-hhhhccCCC-CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 3333 565 555 8998 99999999999988887 9999999999999998 987 7888777766 99999
Q ss_pred EccCCCCCcccCccccccCCc-hhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCC-cc
Q 041121 179 CLSQNSLTDLANIQIKGKLPD-LSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSK-LT 254 (574)
Q Consensus 179 ~Ls~N~l~~l~~~~~~~~lp~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~-L~ 254 (574)
++++|.++. +|. ..+..+++|+.|++++|.++ .+|.. +++|+.|+|++|.+.. .+..+..+++ |+
T Consensus 554 ~Ls~N~L~~---------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 554 YMGYNNLEE---------FPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVE 622 (876)
T ss_dssp ECCSSCCCB---------CCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSC-CCTTSCEECTTCC
T ss_pred EeeCCcCCc---------cCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcccc-chHHHhhccccCC
Confidence 999999874 444 12678899999999999999 56544 7889999999999994 4445777888 99
Q ss_pred EEECCCCCCCCCCCcchhcCCC--CcEEEccCcccccCCCcccc-----cccCccccccccccccCccceeeeccccccc
Q 041121 255 YIDLSSNLLSGKLPDCWWMFDS--LVILDLGNNSFSGRIPDSMG-----FLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 255 ~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~-----~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
+|++++|.++ .+|..+..++. |+.|++++|.+.+..|.... .+++|
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L-------------------------- 675 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA-------------------------- 675 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE--------------------------
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc--------------------------
Confidence 9999999999 67888777654 99999999999876654322 22345
Q ss_pred cccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc-cccc-------cccCccccCCCCccccccccccC
Q 041121 328 ESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNN-------FTAMTQERSSDPTIKVYYYTFVG 399 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~-------l~~L~~l~l~~~~~~~~~~~~~~ 399 (574)
+.+++++|.+....+..+..+++|+.|+|++|+++ .+|. .+.. +++|+.|++++|.+..++..+.
T Consensus 676 -----~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~- 748 (876)
T 4ecn_A 676 -----STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR- 748 (876)
T ss_dssp -----EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS-
T ss_pred -----CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh-
Confidence 88999999999554445568999999999999999 4544 3332 3388888888887653221111
Q ss_pred CCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCC------CcCcccCCcccc
Q 041121 400 PPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSR------NHLTGQNSPKIG 473 (574)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~ 473 (574)
...+++|+.|+|++|.+++ +|..+..+++|++|+|++ |++.+.+|..|.
T Consensus 749 ------------------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 749 ------------------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp ------------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ------------------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 0267889999999999985 788888999999999976 778888899999
Q ss_pred CCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcc-hhcccCcccccCCCCCC--CCCC
Q 041121 474 QLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGT-QLQSFNGSVYAGNPELC--GLPL 541 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~~~l~~~~l~~Np~~c--~~~l 541 (574)
++++|+.|+|++|++. .+|..+. ++|+.|+|++|++...-+... .........+.+|++.+ +|+-
T Consensus 804 ~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp GCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred cCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 9999999999999994 6676665 589999999999984444332 23344556677777665 7653
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-41 Score=372.92 Aligned_cols=415 Identities=17% Similarity=0.192 Sum_probs=337.2
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEc-cCCcCccCchhhhhc--------------------------------
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSL-MFNELEGGIPKFFGN-------------------------------- 104 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~-------------------------------- 104 (574)
.+++.|+|++|++.+.+|.+++.+++|++|+| ++|.+.|..|.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 888876652211000
Q ss_pred ----------------------cc--CC--CCCccccccccccccccccCcEEEccCCcccc------------------
Q 041121 105 ----------------------ML--NL--SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTG------------------ 140 (574)
Q Consensus 105 ----------------------l~--~L--~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~------------------ 140 (574)
+. .+ ..|.+++||. .+.++++ |++|+|++|++++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCC-CCEEECcCCcCCCCccccccccccccccccc
Confidence 00 11 3478888998 8999999 9999999999998
Q ss_pred cCCCCC--CCCCCCEEEccCcccccccchhhhccCCCCEEEccCCC-CCc--ccCccccccCCchhhcCCCCCCeEeccC
Q 041121 141 PIPDLG--GFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS-LTD--LANIQIKGKLPDLSSRFGTSNPGIDISS 215 (574)
Q Consensus 141 ~~~~l~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~~~lp~~~~~~~~~L~~L~l~~ 215 (574)
+++.+. ++++|++|+|++|.+.+.+|..|.++++|++|++++|+ ++. ++... +.++. .+..+++|+.|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i--~~L~~-~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW--TRLAD-DEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH--HHHHH-CTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH--Hhhhh-cccccCCccEEEeeC
Confidence 444477 99999999999999999999999999999999999997 763 32110 01110 135567999999999
Q ss_pred CcccCCCCC-----CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCC-CcEEEccCccccc
Q 041121 216 NHFEGPIPP-----LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDS-LVILDLGNNSFSG 289 (574)
Q Consensus 216 n~l~~~~~~-----~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ 289 (574)
|.++ .+|. .+++|+.|+|++|.+..++ .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 9999 5666 2889999999999999555 7889999999999999999 78888999999 999999999999
Q ss_pred CCCcccccccC--ccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhh---c--CCCCCCEEEcc
Q 041121 290 RIPDSMGFLQN--IQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQL---C--QFAFLQVLDLS 362 (574)
Q Consensus 290 ~~~~~~~~l~~--L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~---~--~~~~L~~L~L~ 362 (574)
.+|..+..+.. | +.+++++|.+.+..|... . .+++|+.|+|+
T Consensus 633 ~lp~~~~~~~~~~L-------------------------------~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 633 YIPNIFNAKSVYVM-------------------------------GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SCCSCCCTTCSSCE-------------------------------EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred cCchhhhccccCCC-------------------------------CEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77777766543 6 889999999988665322 2 34589999999
Q ss_pred CCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 363 LNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 363 ~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
+|.++ .+|. .+..+++|+.|++++|.+..++...... ....+..+++|+.|+|++|.++
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-------------------~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP-------------------KDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-------------------TTSCCTTGGGCCEEECCSSCCC
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc-------------------ccccccccCCccEEECCCCCCc
Confidence 99999 4554 4568899999999999876332221110 0011234568999999999999
Q ss_pred CCCcHhhh--hcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC------CcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 442 GAVPEEIM--DLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR------NQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 442 ~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|++|+|
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 7888886 99999999999999997 688899999999999977 788889999999999999999999999
Q ss_pred ccCCCcchhcccCcccccCCCCCC
Q 041121 514 GKIPTGTQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 514 ~~~p~~~~~~~l~~~~l~~Np~~c 537 (574)
+.+|.... +.++.+++++||+..
T Consensus 819 ~~Ip~~l~-~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEKLT-PQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSCCC-SSSCEEECCSCTTCE
T ss_pred CccCHhhc-CCCCEEECCCCCCCc
Confidence 59998743 789999999999754
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-42 Score=367.28 Aligned_cols=423 Identities=18% Similarity=0.144 Sum_probs=315.4
Q ss_pred hhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCC-CCccc
Q 041121 5 LMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGS-IPDSS 78 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~-~~~~~ 78 (574)
+..|.++++|++|++++|.++.+ +. +|..+++|++|++++|+++... .-.++|++|++++|.+++. .|..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGD---AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred hhhhhcCCcccEEECCCCCcCccChh---hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh
Confidence 56799999999999999999998 56 8999999999999999999872 2348999999999999863 57789
Q ss_pred cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 041121 79 QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLS 157 (574)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~ 157 (574)
..+++|++|++++|.+.+.+|.. .+.++++ |++|++++|++++..+. +..+++|++|+++
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~------------------~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRI------------------DFAGLTS-LNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTT------------------TTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred hccCCccEEECCCCccccccCHh------------------hhhcccc-cCeeeccCCcccccChhhhhccccCceEecc
Confidence 99999999999999844444421 4445555 66666666666665554 6666666666666
Q ss_pred CcccccccchhhhccCCCCEEEccCCCCCcccCccc-------------------cc----cCCchhhcCCCCCCeEecc
Q 041121 158 DNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQI-------------------KG----KLPDLSSRFGTSNPGIDIS 214 (574)
Q Consensus 158 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------------~~----~lp~~~~~~~~~L~~L~l~ 214 (574)
+|.+.......+..+++|++|++++|.++.+..... .+ .++.. ...+++++.++++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-LRYILELSEVEFD 259 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG-GGGCTTCCEEEEE
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH-hhhhccccccccc
Confidence 666653333333456666666666666654321000 00 01111 2345566666776
Q ss_pred CCcccCCC---------CCCCCCCcEEEcCCCcccccccc-----cccCCCCccEEECCCCCCCCCCCcch-hcCCCCcE
Q 041121 215 SNHFEGPI---------PPLPSNSSFLNLSKNRFSRSISL-----CSISGSKLTYIDLSSNLLSGKLPDCW-WMFDSLVI 279 (574)
Q Consensus 215 ~n~l~~~~---------~~~~~~L~~L~L~~n~i~~~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 279 (574)
+|.+.+.. ...+.+++.+++.++.+...... .+...++|++|++++|.+. .+|..+ ..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccE
Confidence 66665421 12256777777777766543210 1123468999999999998 556554 68999999
Q ss_pred EEccCcccccCCC---cccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC--hhhcCCC
Q 041121 280 LDLGNNSFSGRIP---DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP--FQLCQFA 354 (574)
Q Consensus 280 L~L~~N~l~~~~~---~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~--~~~~~~~ 354 (574)
|++++|.+++..| ..+..+++| +.+++++|++++..+ ..+..++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSL-------------------------------QTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTC-------------------------------CEEECTTSCCCCHHHHHHHGGGCT
T ss_pred EEccCCccccccccchhhhhccccC-------------------------------cEEEccCCcccccccchhhhhcCC
Confidence 9999999987653 346677888 899999999986543 4688999
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|++++|+++ .+|..+..+++|+.+++++|.+..++.. .+++|++|+
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-----------------------------~~~~L~~L~ 437 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-----------------------------IPQTLEVLD 437 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-----------------------------SCTTCSEEE
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-----------------------------hcCCceEEE
Confidence 9999999999999 6788888999999999999887532211 124689999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|+.|++++|++++
T Consensus 438 Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 438 VSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 9999998643 57899999999999999 4554 4679999999999999999999999999999999999999998
Q ss_pred cCCC
Q 041121 515 KIPT 518 (574)
Q Consensus 515 ~~p~ 518 (574)
.+|.
T Consensus 512 ~~~~ 515 (549)
T 2z81_A 512 SCPR 515 (549)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 8774
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-41 Score=349.59 Aligned_cols=384 Identities=20% Similarity=0.164 Sum_probs=277.1
Q ss_pred CcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccc
Q 041121 40 LKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNM 119 (574)
Q Consensus 40 L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~ 119 (574)
-+.++.++++++.++.+.++|++|++++|.+++..|..|.++++|++|++++|.+.+.++..
T Consensus 12 ~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------------------ 73 (455)
T 3v47_A 12 GYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------------------ 73 (455)
T ss_dssp TTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------------------
T ss_pred ccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc------------------
Confidence 34678888888888777788999999999999888999999999999999999886544332
Q ss_pred ccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchh--hhccCCCCEEEccCCCCCcccCcccccc
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKS--IGQIFKLEITCLSQNSLTDLANIQIKGK 196 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 196 (574)
+|.++++ |++|++++|++++..+. |.++++|++|++++|.+++..+.. |..+++|++|++++|.++.+.
T Consensus 74 ~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------- 145 (455)
T 3v47_A 74 TFRGLSS-LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ------- 145 (455)
T ss_dssp TTTTCTT-CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC-------
T ss_pred ccccccc-CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC-------
Confidence 6777888 99999999999988776 999999999999999998755544 889999999999999887542
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCC-----CCCcEEEcCCCcccccccccc--------cCCCCccEEECCCCCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLP-----SNSSFLNLSKNRFSRSISLCS--------ISGSKLTYIDLSSNLL 263 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~L~~L~L~~n~i~~~~~~~~--------~~~~~L~~L~L~~n~l 263 (574)
|...+..+++|++|++++|.+++..+..+ ..++.+++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 146 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 146 -PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp -CCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred -cccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 33225678899999999999988776652 578889999999887665432 2557899999999998
Q ss_pred CCCCCcchhcC---CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCc
Q 041121 264 SGKLPDCWWMF---DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN 340 (574)
Q Consensus 264 ~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n 340 (574)
++..|..+... ++|+.|++++|...+.... ...++...... + ........+.+++++|
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~----~--------------~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNFT----F--------------KGLEASGVKTCDLSKS 285 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTTT----T--------------GGGTTSCCCEEECCSS
T ss_pred cccchhhhhccccccceeeEeeccccccccccc-hhhhccCcccc----c--------------ccccccCceEEEecCc
Confidence 87666666554 7899999998876543211 11111100000 0 0000000055555555
Q ss_pred eeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCC
Q 041121 341 KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSG 420 (574)
Q Consensus 341 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (574)
.+.+..+..+..+++|++|++++|++++..+..|.+
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------- 321 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-------------------------------------------- 321 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT--------------------------------------------
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcC--------------------------------------------
Confidence 555555555555555666666665555444444433
Q ss_pred cccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC
Q 041121 421 REYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS 500 (574)
Q Consensus 421 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~ 500 (574)
+++|++|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|++++|++++..++.|..++
T Consensus 322 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 322 ------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT 395 (455)
T ss_dssp ------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC
Confidence 44457788888888766677778888888888888888777777788888888888888888876666777788
Q ss_pred CCCEEeccCCcCcccCCCc
Q 041121 501 VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~~ 519 (574)
+|+.|++++|++++.+|..
T Consensus 396 ~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 396 SLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TCCEEECCSSCBCCCTTTT
T ss_pred cccEEEccCCCcccCCCcc
Confidence 8888888888888777754
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-41 Score=359.39 Aligned_cols=449 Identities=16% Similarity=0.159 Sum_probs=277.8
Q ss_pred cEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc-----CCCCCccc
Q 041121 41 KTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML-----NLSDNKLA 114 (574)
Q Consensus 41 ~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~n~l~ 114 (574)
+++++++|+++.++ .+.++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++. +|++|.++
T Consensus 34 ~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 44444444444442 1234444444444444444444444444444444444444443344333332 33344444
Q ss_pred cccccccccccccCcEEEccCCcccccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCC--CEEEccCCCC--Ccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKL--EITCLSQNSL--TDL 188 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L--~~L~Ls~N~l--~~l 188 (574)
.+|. . .+++ |++|++++|++++.. +. |.++++|++|++++|+++.. .|..+++| ++|++++|.+ +..
T Consensus 114 ~lp~-~--~l~~-L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 114 NISC-C--PMAS-LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp EECS-C--CCTT-CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred ccCc-c--cccc-CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 4444 2 5666 888888888888644 34 88888888888888888753 45555555 8888888877 432
Q ss_pred cCccccccCCchhhcCCC-CCCeEeccCCcccCCCCCC----CCCCcEEEcCCCc-----ccccccccccCCCCccEEEC
Q 041121 189 ANIQIKGKLPDLSSRFGT-SNPGIDISSNHFEGPIPPL----PSNSSFLNLSKNR-----FSRSISLCSISGSKLTYIDL 258 (574)
Q Consensus 189 ~~~~~~~~lp~~~~~~~~-~L~~L~l~~n~l~~~~~~~----~~~L~~L~L~~n~-----i~~~~~~~~~~~~~L~~L~L 258 (574)
....+ ..+. ..-.++++.|.+.+.++.. +.+|+.+++++|. +.+.. ..+...++++.+++
T Consensus 187 ~~~~l---------~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L 256 (562)
T 3a79_B 187 ETESL---------QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLNVTL 256 (562)
T ss_dssp SCCEE---------EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEEEEE
T ss_pred Ccccc---------cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceEEEe
Confidence 22111 1111 1114466666666544432 5667777777774 11111 23445667777777
Q ss_pred CCCCCCCCC----CcchhcCCCCcEEEccCcccccCCCccc-----ccccCccccccccccccCccceeeeccccccccc
Q 041121 259 SSNLLSGKL----PDCWWMFDSLVILDLGNNSFSGRIPDSM-----GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 259 ~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+++.+.+.. +.. ...++|++|++++|.+++.+|..+ ..++.|+..+.....-..+. -.....++.
T Consensus 257 ~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~-----~~~~~~~~~ 330 (562)
T 3a79_B 257 QHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK-----EALYSVFAE 330 (562)
T ss_dssp EEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCH-----HHHHHHHHT
T ss_pred cCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecCh-----hhhhhhhcc
Confidence 666554211 111 123477777777777776666655 33333322211100000000 000000000
Q ss_pred cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccccccc
Q 041121 330 WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 409 (574)
...+.+++++|.+.... ....+++|++|++++|.+++..|..+.++++|+.+++++|.+..++.
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------- 394 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-------------- 394 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH--------------
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc--------------
Confidence 11278899999876432 12678899999999999998888889999999999999888753211
Q ss_pred CcccccccCCCcccccccCcccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
.+..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+..+. ++|++|++++|++
T Consensus 395 ----------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l 462 (562)
T 3a79_B 395 ----------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI 462 (562)
T ss_dssp ----------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred ----------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence 11234567889999999999987344 4588899999999999999876665543 7899999999999
Q ss_pred cccCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCCCC
Q 041121 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLPLP 542 (574)
Q Consensus 489 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~l~ 542 (574)
+ .+|..+..+++|+.|++++|+|+ .+|.. ..++.++.+++++|||.|+|++.
T Consensus 463 ~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 463 M-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp C-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred c-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 9 55665669999999999999999 67764 46788889999999999999753
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-41 Score=354.05 Aligned_cols=437 Identities=18% Similarity=0.170 Sum_probs=318.4
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
.+|..+. ++|++|++++|.++.+ +. +|..+++|++|++++|+++.+ ..-.++|++|++++|+++. +|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTS---DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHH---HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC
T ss_pred ccccccc--ccccEEECCCCcccccChh---hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc
Confidence 3555444 7888888888888887 34 788888888888888888876 2223788888888888884 4544
Q ss_pred ccCCCCCCEEEccCCcCcc-Cchhhhhccc-----CCCCCccccccccccccccccC--cEEEccCCcc--cccCCC-CC
Q 041121 78 SQHMVYLEHLSLMFNELEG-GIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSL--ESLHLEVNHF--TGPIPD-LG 146 (574)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L--~~L~L~~n~l--~~~~~~-l~ 146 (574)
.+++|++|++++|.+++ ..|..|+.+. ++++|.+++ ..+..+++ | ++|++++|.+ .+..+. +.
T Consensus 88 --~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~-L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAH-LNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTT-SCEEEEEEEECTTTTSSCCTTTTT
T ss_pred --ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcccccc-ceeeEEEeeccccccccccccccc
Confidence 78888888888888886 3577777766 455666655 36677777 7 9999999988 555554 55
Q ss_pred CCC-CCCEEEccCcccccccc-hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC
Q 041121 147 GFS-SMKRLYLSDNLLNGTIN-KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP 224 (574)
Q Consensus 147 ~l~-~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~ 224 (574)
.+. +...+++++|.+.+..+ ..+..+++|+.|++++|.-.. ....+.+.+|. +..+++|+.|++++|.+.+..+.
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN-KCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT-TTHHHHHHHHG--GGGCTTCCEEEEEEEEEEHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc-ccceeecchhh--hccccchhhccccccccCHHHHH
Confidence 544 23356677777765443 467778888888888875110 00122333442 46777888888888777642211
Q ss_pred C------CCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCCCCcchhcC---CCCcEEEccCcccccC
Q 041121 225 L------PSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGKLPDCWWMF---DSLVILDLGNNSFSGR 290 (574)
Q Consensus 225 ~------~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~ 290 (574)
. .++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.+.
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccc
Confidence 1 3478888888888886555555 6778888888888888 2332445444 6788888888887643
Q ss_pred CCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccc--
Q 041121 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISG-- 368 (574)
Q Consensus 291 ~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 368 (574)
. .+..+++| +.+++++|.+.+..+..+..+++|++|++++|++++
T Consensus 318 ~--~~~~l~~L-------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 318 L--CPSKISPF-------------------------------LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp C--CCSSCCCC-------------------------------CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred c--chhhCCcc-------------------------------cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 2 12456666 778888888888778888888888888888888875
Q ss_pred cCCccccccccCccccCCCCcccc-ccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 369 KIPKCFNNFTAMTQERSSDPTIKV-YYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 369 ~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
..|..+..+++|+.+++++|.+.. . +...+..+++|++|++++|.+++..|..
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l--------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDE--------------------------KKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCG--------------------------GGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred cchHHHhhCCCCCEEECCCCcCCccc--------------------------ccchhccCccCCEEECcCCCCCcchhhh
Confidence 345667788888888888877652 1 1112456778999999999998766665
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++.+.+..|..+++|+.|++++|++++..+
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 53 79999999999999 667777799999999999999996555569999999999999999996655
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-39 Score=334.62 Aligned_cols=370 Identities=22% Similarity=0.184 Sum_probs=283.6
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc
Q 041121 60 FVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT 139 (574)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~ 139 (574)
-+.++.++++++ .+|. -.++|++|+|++|.+++..|. .|.++++ |++|++++|.+.
T Consensus 12 ~~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~-------------------~~~~l~~-L~~L~L~~n~~~ 67 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNET-------------------SFSRLQD-LQFLKVEQQTPG 67 (455)
T ss_dssp TTEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTT-------------------TTSSCTT-CCEEECCCCSTT
T ss_pred ccccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChh-------------------HhccCcc-ccEEECcCCccc
Confidence 356788888888 4554 237899999999999865555 5667788 999999999987
Q ss_pred ccC-CC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCc
Q 041121 140 GPI-PD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH 217 (574)
Q Consensus 140 ~~~-~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~ 217 (574)
+.+ +. |.++++|++|++++|++.+..|..|.++++|++|++++|.++... .+...+..+++|++|++++|.
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV-------LSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH-------HHSSTTTTCTTCCEEECCSSB
T ss_pred ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc-------cCcccccCcccCCEEECCCCc
Confidence 543 44 999999999999999999888999999999999999999887411 011114667788888888888
Q ss_pred ccCCCCCC----CCCCcEEEcCCCcccccccccccCC--CCccEEECCCCCCCCCCCcch--------hcCCCCcEEEcc
Q 041121 218 FEGPIPPL----PSNSSFLNLSKNRFSRSISLCSISG--SKLTYIDLSSNLLSGKLPDCW--------WMFDSLVILDLG 283 (574)
Q Consensus 218 l~~~~~~~----~~~L~~L~L~~n~i~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~ 283 (574)
+++..|.. +++|++|++++|.+.+..+..+..+ .+++.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 88776642 6778888888888877766665543 677888888888775544332 245678888888
Q ss_pred CcccccCCCcccccc---cCccccccccccccCccceeeeccccccccccccceEEecCceeccC----------CChhh
Q 041121 284 NNSFSGRIPDSMGFL---QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK----------TPFQL 350 (574)
Q Consensus 284 ~N~l~~~~~~~~~~l---~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~----------~~~~~ 350 (574)
+|.+++..+..+... .++ +.+++++|...+. .+..+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L-------------------------------~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKI-------------------------------QSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCE-------------------------------EEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CCcccccchhhhhccccccce-------------------------------eeEeeccccccccccchhhhccCccccc
Confidence 888776666555443 334 5555555533321 11112
Q ss_pred c--CCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccC
Q 041121 351 C--QFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLG 428 (574)
Q Consensus 351 ~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (574)
. ..++|++|++++|.+++..+..|. .++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~--------------------------------------------------~l~ 299 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFS--------------------------------------------------HFT 299 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTT--------------------------------------------------TCT
T ss_pred ccccccCceEEEecCccccccchhhcc--------------------------------------------------cCC
Confidence 1 225677777777777655555544 345
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 56999999999998888899999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 509 YNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 509 ~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+|+|++..+.. ..++.++.+++++||+.|+|+.
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999544433 4678999999999999999983
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.3e-38 Score=338.40 Aligned_cols=442 Identities=19% Similarity=0.199 Sum_probs=353.3
Q ss_pred hhh-hhhcCCCCCcEEECCCCCCCCC-CchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCc
Q 041121 3 KLL-MRSLRLHSLRYLNLEENNLANC-SDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPD 76 (574)
Q Consensus 3 ~l~-~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~ 76 (574)
.++ .+|.++++|++|+|++|+|+.+ +. +|.++++|++|+|++|+++.+. .-.++|++|++++|++++..+.
T Consensus 66 ~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~---~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTT---TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCCHHHHhCCCCCCEEECCCCcCCCcChh---HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 354 6799999999999999999999 55 8999999999999999998872 2348999999999999988888
Q ss_pred cccCCCCCCEEEccCCcCccC-chhhhhccc-----CCCCCccccccccccccccc---cCcEEEccCCcccccCCCCCC
Q 041121 77 SSQHMVYLEHLSLMFNELEGG-IPKFFGNML-----NLSDNKLAIIQNMSSGCLKN---SLESLHLEVNHFTGPIPDLGG 147 (574)
Q Consensus 77 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~---~L~~L~L~~n~l~~~~~~l~~ 147 (574)
.|+++++|++|++++|.+++. .|..+..+. ++++|.+++++...+..+.+ ....++++.|.+..+.+....
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~ 222 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 222 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc
Confidence 899999999999999999764 466666654 78899999977667777655 134788899988876666444
Q ss_pred CCCCCEEEccCccccc-ccchhhhccCCCCEEEc----------------------------------------------
Q 041121 148 FSSMKRLYLSDNLLNG-TINKSIGQIFKLEITCL---------------------------------------------- 180 (574)
Q Consensus 148 l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L---------------------------------------------- 180 (574)
...++.+++.+|.... ..+..+..+..++...+
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence 4566777777765432 12233344444433332
Q ss_pred -----------cCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccC
Q 041121 181 -----------SQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSIS 249 (574)
Q Consensus 181 -----------s~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 249 (574)
.++.+.. ++. +.....++.|++.+|.+.+..+..+..++.+++..|.+..... ...
T Consensus 303 ~~~~~l~~l~~~~~~~~~---------~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~ 369 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIER---------VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVD 369 (635)
T ss_dssp GGGTTCSEEEEESCEEEE---------CGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC--CCB
T ss_pred hhhccccccccccccccc---------ccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc--ccc
Confidence 2222211 111 3566789999999999998777778999999999998876543 346
Q ss_pred CCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccc
Q 041121 250 GSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTF 327 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~ 327 (574)
+++|+.|++++|.+.. ..+..+..+.+|+.++++.+.+.. .+..+..+++|
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L-------------------------- 422 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQL-------------------------- 422 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTC--------------------------
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccc--------------------------
Confidence 8999999999999863 355667788999999999998874 45567778888
Q ss_pred cccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccc
Q 041121 328 ESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHY 406 (574)
Q Consensus 328 ~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 406 (574)
+.+++..++.....+ ..+..+++++.++++.|.+....+..+..++.++.+++++|....
T Consensus 423 -----~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~-------------- 483 (635)
T 4g8a_A 423 -----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------------- 483 (635)
T ss_dssp -----CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------------
T ss_pred -----cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc--------------
Confidence 888898888776544 467889999999999999998888889999999999988876421
Q ss_pred cccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 041121 407 SFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN 486 (574)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 486 (574)
+..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|++++|
T Consensus 484 -----------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 484 -----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp -----------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS
T ss_pred -----------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC
Confidence 112334567888999999999999888999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccCC-CCCCEEeccCCcCcccCC
Q 041121 487 QLVGGIPSSLSPL-SVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 487 ~i~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p 517 (574)
+|++..|+.|..+ ++|+.|+|++|++++...
T Consensus 553 ~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 553 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999998 689999999999996554
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-38 Score=327.61 Aligned_cols=391 Identities=22% Similarity=0.212 Sum_probs=174.3
Q ss_pred hhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC-CC-cC--C-------------cccEEEccC
Q 041121 5 LMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL-SN-IS--S-------------NFVSIDLSF 67 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~--~-------------~L~~L~Ls~ 67 (574)
|+.+ +.++|++|++++|.+..+|. +|+++++|++|++++|++++. +. +. . ++++|++++
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~---~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPV---EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccc-ccccchhhhcccCchhhCCh---hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 3444 35789999999999877777 788999999999998877643 11 11 2 358899999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc--CCCCCccccccccccccccccCcEEEccCCcccccCCCC
Q 041121 68 NQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML--NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDL 145 (574)
Q Consensus 68 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l 145 (574)
|++++ +|. ..++|++|++++|.+++ +|..+.++. ++++|.+++++.. .++ |++|++++|++++ ++.+
T Consensus 81 ~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~----~~~-L~~L~L~~n~l~~-lp~~ 149 (454)
T 1jl5_A 81 LGLSS-LPE---LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL----PPL-LEYLGVSNNQLEK-LPEL 149 (454)
T ss_dssp SCCSC-CCS---CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC----CTT-CCEEECCSSCCSS-CCCC
T ss_pred Ccccc-CCC---CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC----CCC-CCEEECcCCCCCC-Cccc
Confidence 98885 333 23788999999888885 554333332 4444444444331 023 5555555555554 2245
Q ss_pred CCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC
Q 041121 146 GGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL 225 (574)
Q Consensus 146 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~ 225 (574)
.++++|++|++++|++++ +|.. ..+|++|++++|.++.+ |. +..+++|+.|++++|.+++ +|..
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l---------~~--~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL---------PE--LQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC---------CC--CTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC---------cc--ccCCCCCCEEECCCCcCCc-CCCC
Confidence 555555555555555553 2322 23555555555555432 11 2444555555555555554 2333
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+.+|++|++++|.+..++ .+..+++|++|++++|.+++ .|.. +++|+.|++++|.+++ +|..+ ++|
T Consensus 214 ~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L---- 279 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSL---- 279 (454)
T ss_dssp CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTC----
T ss_pred cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcC----
Confidence 345555555555555333 24445555555555555542 2221 2455555555555543 22211 233
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|.+.+... ..++|++|++++|++++. + .
T Consensus 280 ---------------------------~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~----~--------- 314 (454)
T 1jl5_A 280 ---------------------------TFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C----D--------- 314 (454)
T ss_dssp ---------------------------CEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C----C---------
T ss_pred ---------------------------CEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c----C---------
Confidence 444555554443110 013445555555544421 1 0
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
.+++|++|++++|.+++ +|.. +++|++|++++|+++
T Consensus 315 ----------------------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 315 ----------------------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ----------------------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 01246777777777764 4433 467777777777777
Q ss_pred ccCCccccCCCCCCEEeCCCCcccc--cCCCCccCC-------------CCCCEEeccCCcCcc--cCCCcchhcccCcc
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVG--GIPSSLSPL-------------SVLSVMDLSYNNLSG--KIPTGTQLQSFNGS 528 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l-------------~~L~~L~Ls~N~l~~--~~p~~~~~~~l~~~ 528 (574)
+ +|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. ++..+
T Consensus 351 ~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L 421 (454)
T 1jl5_A 351 E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDL 421 (454)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhhe
Confidence 4 343 35777777777777776 556666665 789999999999996 5664 45566
Q ss_pred cccCCCCCCC
Q 041121 529 VYAGNPELCG 538 (574)
Q Consensus 529 ~l~~Np~~c~ 538 (574)
.+.+|...|.
T Consensus 422 ~~~~~~~~~~ 431 (454)
T 1jl5_A 422 RMNSERVVDP 431 (454)
T ss_dssp ----------
T ss_pred eCcCcccCCc
Confidence 6777655443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=346.34 Aligned_cols=428 Identities=18% Similarity=0.141 Sum_probs=290.7
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC----CcCCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS----NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
+...+++++++|+++.+|. .+. ++|++|++++|.++.+. .-.++|++|++++|++++..|.+|..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~---~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK---DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSCCT---TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccCCC---CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 4455899999999998876 443 89999999999998873 22378999999999999888899999999999
Q ss_pred EEccCCcCccCchhh-hhccc--CCCCCccccccc-cccccccccCcEEEccCCcccccCCCCCCCCCC--CEEEccCcc
Q 041121 87 LSLMFNELEGGIPKF-FGNML--NLSDNKLAIIQN-MSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSM--KRLYLSDNL 160 (574)
Q Consensus 87 L~L~~n~l~~~~~~~-~~~l~--~L~~n~l~~l~~-~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L--~~L~L~~n~ 160 (574)
|++++|+++ .+|.. +.++. ++++|.+++++. ..|.++++ |++|++++|+++.. .+.++++| ++|++++|.
T Consensus 105 L~Ls~N~l~-~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 105 LDVSHNRLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK-LTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp EECTTSCCC-EECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTT-CCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred EECCCCcCC-ccCccccccCCEEECCCCCccccCchHhhcccCc-ccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence 999999998 45543 22333 889999998652 38999998 99999999999852 35666666 999999999
Q ss_pred c--ccccchhhhccC--CCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCc-------------------
Q 041121 161 L--NGTINKSIGQIF--KLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNH------------------- 217 (574)
Q Consensus 161 i--~~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~------------------- 217 (574)
+ .+..|..|..+. .+ .+++++|.+. +.++...+..+++|+.+++++|+
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~--------~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L 251 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLF--------SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCC--------CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred ccccccCcccccccCcceE-EEEecCccch--------hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence 9 777777777654 22 3344554433 12333323344445555555442
Q ss_pred ---------ccCCC-----CC-CCCCCcEEEcCCCcccccccccc-----cCCCCccEEECCCCCCCCCCC-cchhc---
Q 041121 218 ---------FEGPI-----PP-LPSNSSFLNLSKNRFSRSISLCS-----ISGSKLTYIDLSSNLLSGKLP-DCWWM--- 273 (574)
Q Consensus 218 ---------l~~~~-----~~-~~~~L~~L~L~~n~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~--- 273 (574)
+.+.. +. ...+|++|++++|.+.+..+..+ ..++.|+.++++.+.+ ..| ..+..
T Consensus 252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 22100 00 01245555555555543333222 2333333333333333 112 11111
Q ss_pred CCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCC
Q 041121 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQF 353 (574)
Q Consensus 274 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~ 353 (574)
..+|+.|++++|.+.... ....+++| +.+++++|.+.+..+..+..+
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l 376 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSF-------------------------------TFLNFTQNVFTDSVFQGCSTL 376 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCC-------------------------------CEEECCSSCCCTTTTTTCCSC
T ss_pred cCcceEEEccCCCccccc--CccCCCCc-------------------------------eEEECCCCccccchhhhhccc
Confidence 134666666666554221 11344444 778888888888778888888
Q ss_pred CCCCEEEccCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCccc
Q 041121 354 AFLQVLDLSLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIK 431 (574)
Q Consensus 354 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 431 (574)
++|++|++++|++++.. |..|.++++|+.+++++|.+... .+...+..+++|+
T Consensus 377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------------------~~~~~~~~l~~L~ 431 (562)
T 3a79_B 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-------------------------AYDRTCAWAESIL 431 (562)
T ss_dssp SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-------------------------CSSCCCCCCTTCC
T ss_pred CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-------------------------cChhhhcCcccCC
Confidence 88888888888887532 35677888888888888776420 1122345678899
Q ss_pred EEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCc
Q 041121 432 SLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 432 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
+|++++|.+++..|..+. ++|++|+|++|+++ .+|..+.++++|++|++++|+++.+.+..|..+++|+.|++++|+
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999999866555443 69999999999999 455556699999999999999996555559999999999999999
Q ss_pred CcccCCCc
Q 041121 512 LSGKIPTG 519 (574)
Q Consensus 512 l~~~~p~~ 519 (574)
+++..|..
T Consensus 509 ~~c~c~~~ 516 (562)
T 3a79_B 509 WDCTCPGI 516 (562)
T ss_dssp BCCCHHHH
T ss_pred cCCCcchH
Confidence 99776643
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-38 Score=327.10 Aligned_cols=319 Identities=18% Similarity=0.180 Sum_probs=210.8
Q ss_pred CcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccc
Q 041121 40 LKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQN 118 (574)
Q Consensus 40 L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~ 118 (574)
-+.++.++++++.+ ..+.+++++|++++|++++..+..|..+++|++|+|++|.+++..|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~------------------ 74 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG------------------ 74 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT------------------
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh------------------
Confidence 35677777777776 33557788888888888877788888899999999998888765554
Q ss_pred cccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccC
Q 041121 119 MSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKL 197 (574)
Q Consensus 119 ~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 197 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|++.+..+..|..+++|++|++++|.++.+....|
T Consensus 75 -~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---- 148 (477)
T 2id5_A 75 -AFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF---- 148 (477)
T ss_dssp -TTTTCTT-CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS----
T ss_pred -hhhCCcc-CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc----
Confidence 5666777 89999999888877766 7888899999999888888878888888888888888887765432221
Q ss_pred CchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 198 PDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 198 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
.. +++|++|++++|.++++.+..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 149 -----~~---------------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 202 (477)
T 2id5_A 149 -----SG---------------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202 (477)
T ss_dssp -----TT---------------------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTC
T ss_pred -----cC---------------------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccc
Confidence 22 2344555555555555555555666777777777777776666667777777
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
+.|++++|...+..+.......+| +.+++++|.+....+..+..+++|+
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNL-------------------------------TSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCC-------------------------------SEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred ceeeCCCCccccccCcccccCccc-------------------------------cEEECcCCcccccCHHHhcCccccC
Confidence 777777776655444443333344 5556666655544444555555566
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|+|++|.+++..+..|.+ +++|+.|+|++
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~ 281 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHE--------------------------------------------------LLRLQEIQLVG 281 (477)
T ss_dssp EEECCSSCCCEECTTSCTT--------------------------------------------------CTTCCEEECCS
T ss_pred eeECCCCcCCccChhhccc--------------------------------------------------cccCCEEECCC
Confidence 6666655555433333322 22345566666
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 6665555555666666666666666666555555555666666666666555
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.5e-37 Score=316.16 Aligned_cols=356 Identities=17% Similarity=0.105 Sum_probs=220.8
Q ss_pred hhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCC
Q 041121 7 RSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 85 (574)
.++++++|++|++++|.++.++ .+..+++|++|++++|+++.+. .-.++|++|++++|.+++. + +..+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccCh----hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 4566778888888888877764 3677788888888888777652 2235677777777776643 2 66667777
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccccc
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
+|++++|++++. .+..+++ |++|++++|++++. .+..+++|++|++++|+..+.+
T Consensus 110 ~L~L~~N~l~~l----------------------~~~~l~~-L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 110 YLNCDTNKLTKL----------------------DVSQNPL-LTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp EEECCSSCCSCC----------------------CCTTCTT-CCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC
T ss_pred EEECCCCcCCee----------------------cCCCCCc-CCEEECCCCcccee--ccccCCcCCEEECCCCCccccc
Confidence 777776666532 1233455 66777777766653 2566666777777666433233
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccc
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISL 245 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~ 245 (574)
.+..+++|++|++++|.++.++ +..+++|+.|++++|.+++..-..+++|++|++++|++++++
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~------------l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-- 228 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD------------VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-- 228 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC------------CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--
T ss_pred --ccccCCcCCEEECCCCccceec------------cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--
Confidence 3556666666666666665432 233445555555555555432222444444444444444432
Q ss_pred cccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccc
Q 041121 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQ 325 (574)
Q Consensus 246 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~ 325 (574)
+..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L-------------------------------------- 266 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL-------------------------------------- 266 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC--------------------------------------
T ss_pred -ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC--------------------------------------
Confidence 333444444444444444321 22334444444444332
Q ss_pred cccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccc
Q 041121 326 TFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405 (574)
Q Consensus 326 ~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 405 (574)
+.+++++|.+.+..| +..+++|+.|++++|...+.+|.. ...++.+++
T Consensus 267 -------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l-------------------- 314 (457)
T 3bz5_A 267 -------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDL-------------------- 314 (457)
T ss_dssp -------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCC--------------------
T ss_pred -------CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CCcceEech--------------------
Confidence 445556665544443 345677777777777765555532 233333332
Q ss_pred ccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCC
Q 041121 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSR 485 (574)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 485 (574)
+..++|++|++++|++++. + +..+++|++|++++|++++ ++.|+.|++++
T Consensus 315 -------------------~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 315 -------------------SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp -------------------TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred -------------------hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 3456789999999999964 3 8899999999999999985 35677788999
Q ss_pred CcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 486 NQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 486 N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 999875 35567888999999999999975
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-37 Score=320.14 Aligned_cols=299 Identities=18% Similarity=0.151 Sum_probs=158.4
Q ss_pred CcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC
Q 041121 128 LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~ 206 (574)
++.|++++|++++..+. |.++++|++|+|++|.+++..|.+|.++++|++|++++|.++.++... +..++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~ 104 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLS 104 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---------STTCT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---------ccCCC
Confidence 89999999999987776 899999999999999998888889999999999999999887554322 34455
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
+|++|++++|++.+ ..+..+..+++|++|++++|.+++..+..|.++++|+.|++++|.
T Consensus 105 ~L~~L~Ls~n~i~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 105 NLTKLDISENKIVI---------------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp TCCEEECTTSCCCE---------------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CCCEEECCCCcccc---------------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 55555555555544 433444444455555555555444444444455555555555555
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNI 366 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l 366 (574)
+++..+..+..+++| +.+++++|.+.+..+..|..+++|++|++++|..
T Consensus 164 l~~~~~~~l~~l~~L-------------------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 164 LTSIPTEALSHLHGL-------------------------------IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp CSSCCHHHHTTCTTC-------------------------------CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred CcccChhHhcccCCC-------------------------------cEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 443333334444444 4444444444444444444555555555555443
Q ss_pred cccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH
Q 041121 367 SGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE 446 (574)
Q Consensus 367 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 446 (574)
.+.++.......+|+.+++++|.+... ....+..+++|+.|+|++|.+++..+.
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAV--------------------------PYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSC--------------------------CHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCcccccCccccEEECcCCccccc--------------------------CHHHhcCccccCeeECCCCcCCccChh
Confidence 333322211111111111111100000 000011223334555555555444444
Q ss_pred hhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 447 EIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 447 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.|.++++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 4455555555555555555444445555555555555555555444444455555555555555554
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9e-36 Score=309.62 Aligned_cols=346 Identities=22% Similarity=0.299 Sum_probs=200.5
Q ss_pred CCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEE
Q 041121 11 LHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLS 88 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 88 (574)
+++|++|+++++.++.++. +..+++|++|++++|.++.+..+ .++|++|++++|.+++..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4556666666666665543 45566666666666666554221 2455555555555553332 55555555555
Q ss_pred ccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchh
Q 041121 89 LMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKS 168 (574)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 168 (574)
+++|.+++. + .+..+++ |++|++++|.+.+. +.+.++++|++|+++ |.+.+.. .
T Consensus 119 L~~n~l~~~-~--------------------~~~~l~~-L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~-~~~~~~~--~ 172 (466)
T 1o6v_A 119 LFNNQITDI-D--------------------PLKNLTN-LNRLELSSNTISDI-SALSGLTSLQQLSFG-NQVTDLK--P 172 (466)
T ss_dssp CCSSCCCCC-G--------------------GGTTCTT-CSEEEEEEEEECCC-GGGTTCTTCSEEEEE-ESCCCCG--G
T ss_pred CCCCCCCCC-h--------------------HHcCCCC-CCEEECCCCccCCC-hhhccCCcccEeecC-CcccCch--h
Confidence 555554422 1 1233444 55555555555432 224555555555553 2332221 2
Q ss_pred hhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccccc
Q 041121 169 IGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSI 248 (574)
Q Consensus 169 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 248 (574)
+..+++|++|++++|.++.++. +.. +++|++|++++|.+.+..+ +.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-----------l~~---------------------l~~L~~L~l~~n~l~~~~~--~~ 218 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDISV-----------LAK---------------------LTNLESLIATNNQISDITP--LG 218 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-----------GGG---------------------CTTCSEEECCSSCCCCCGG--GG
T ss_pred hccCCCCCEEECcCCcCCCChh-----------hcc---------------------CCCCCEEEecCCccccccc--cc
Confidence 4555555555555555443210 122 3445555555555544433 33
Q ss_pred CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 249 SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 249 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|
T Consensus 219 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L--------------------------- 267 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL--------------------------- 267 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC---------------------------
T ss_pred ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC---------------------------
Confidence 456666666666666532 345566666666666666654332 4455555
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
+.+++++|.+.+..+ +..+++|++|++++|++++..+ +
T Consensus 268 ----~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~---------------------------------- 305 (466)
T 1o6v_A 268 ----TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I---------------------------------- 305 (466)
T ss_dssp ----SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G----------------------------------
T ss_pred ----CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h----------------------------------
Confidence 556666666654333 5566677777777776654222 2
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQL 488 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 488 (574)
..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++
T Consensus 306 ----------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 306 ----------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ----------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ----------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 235556888888888875544 67888888888888888765 4677888888888888888
Q ss_pred cccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 489 VGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 489 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
++..| +..+++|+.|++++|++++ +|.
T Consensus 366 ~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 366 SDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp CBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred Cccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 87766 7888888888888888884 444
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-35 Score=303.38 Aligned_cols=343 Identities=23% Similarity=0.287 Sum_probs=233.9
Q ss_pred CCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccc
Q 041121 37 LHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLA 114 (574)
Q Consensus 37 l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~ 114 (574)
+++++.|+++++.++.+..+ .++|++|++++|.+++..+ +..+++|++|++++|.+.+..
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------------- 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---------------- 106 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----------------
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh----------------
Confidence 45666666666666655322 2566666666666654333 566666666666666555321
Q ss_pred cccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCcccc
Q 041121 115 IIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIK 194 (574)
Q Consensus 115 ~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 194 (574)
.+..+++ |++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++ .+..+.
T Consensus 107 -----~~~~l~~-L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~~----- 171 (466)
T 1o6v_A 107 -----PLANLTN-LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDLK----- 171 (466)
T ss_dssp -----GGTTCTT-CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCCG-----
T ss_pred -----hhcCCCC-CCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCch-----
Confidence 1233444 6666666666654322 55666666666666666532 2355666666666542 222110
Q ss_pred ccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcC
Q 041121 195 GKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMF 274 (574)
Q Consensus 195 ~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 274 (574)
. +.. +++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+
T Consensus 172 ----~--~~~---------------------l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 172 ----P--LAN---------------------LTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp ----G--GTT---------------------CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred ----h--hcc---------------------CCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--cccc
Confidence 0 122 345555556655555443 25567888888888888875544 6778
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
++|+.|++++|.+++. ..+..+++| +.+++++|.+.+..+ +..++
T Consensus 221 ~~L~~L~l~~n~l~~~--~~l~~l~~L-------------------------------~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--GTLASLTNL-------------------------------TDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTC-------------------------------SEEECCSSCCCCCGG--GTTCT
T ss_pred CCCCEEECCCCCcccc--hhhhcCCCC-------------------------------CEEECCCCccccchh--hhcCC
Confidence 8888888888888743 345666666 777888887776544 67777
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|++++|.+++..+ + ..+++|+.|+
T Consensus 266 ~L~~L~l~~n~l~~~~~--~--------------------------------------------------~~l~~L~~L~ 293 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--L--------------------------------------------------AGLTALTNLE 293 (466)
T ss_dssp TCSEEECCSSCCCCCGG--G--------------------------------------------------TTCTTCSEEE
T ss_pred CCCEEECCCCccCcccc--c--------------------------------------------------cCCCccCeEE
Confidence 78888888877764322 2 2355679999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|.+++..+ +..+++|++|+|++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 99999985544 8899999999999999997765 78999999999999999975 468999999999999999997
Q ss_pred cCCCcchhcccCcccccCCCCCC
Q 041121 515 KIPTGTQLQSFNGSVYAGNPELC 537 (574)
Q Consensus 515 ~~p~~~~~~~l~~~~l~~Np~~c 537 (574)
..| ...++.++.+++++|+|..
T Consensus 368 ~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG-GTTCTTCCEEECCCEEEEC
T ss_pred cch-hhcCCCCCEEeccCCcccC
Confidence 776 6778899999999998876
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.7e-35 Score=300.89 Aligned_cols=363 Identities=24% Similarity=0.230 Sum_probs=229.9
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhccc------------------CCCCCcccccccccc
Q 041121 60 FVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNML------------------NLSDNKLAIIQNMSS 121 (574)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------------~L~~n~l~~l~~~~~ 121 (574)
|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+. ++++|.++++|. .
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~-~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE-L- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-C-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC-C-
Confidence 33334444444 24444444444444444444444444444443221 445555555554 1
Q ss_pred ccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchh
Q 041121 122 GCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLS 201 (574)
Q Consensus 122 ~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~ 201 (574)
.++ |++|++++|.+++. +. .+++|++|++++|++++. +.. .++|++|++++|.++.+ |.
T Consensus 90 --~~~-L~~L~l~~n~l~~l-p~--~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~l---------p~-- 148 (454)
T 1jl5_A 90 --PPH-LESLVASCNSLTEL-PE--LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKL---------PE-- 148 (454)
T ss_dssp --CTT-CSEEECCSSCCSSC-CC--CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSSC---------CC--
T ss_pred --cCC-CCEEEccCCcCCcc-cc--ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCCC---------cc--
Confidence 234 88888888888863 33 237888888888888743 211 26788888888877643 31
Q ss_pred hcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 202 SRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 202 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
+..+++|++|++++|++++ +|..+.+|++|++++|.+++++ .+..+++|++|++++|.+++ .|.. .++|++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 4677888888888888886 5555678888888888888754 46788888888888888874 3432 25888888
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.++ .+| .+..+++| +.+++++|++.+. |. .+++|++|++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L-------------------------------~~L~l~~N~l~~l-~~---~~~~L~~L~l 264 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFL-------------------------------TTIYADNNLLKTL-PD---LPPSLEALNV 264 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTC-------------------------------CEEECCSSCCSSC-CS---CCTTCCEEEC
T ss_pred CcCCcCC-ccc-ccCCCCCC-------------------------------CEEECCCCcCCcc-cc---cccccCEEEC
Confidence 8888887 555 37777777 7888888888763 32 2478888888
Q ss_pred cCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 362 SLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
++|++++ +|.. .++|+.+++++|.+..++ ..+++|+.|++++|.++
T Consensus 265 ~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~------------------------------~~~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 265 RDNYLTD-LPEL---PQSLTFLDVSENIFSGLS------------------------------ELPPNLYYLNASSNEIR 310 (454)
T ss_dssp CSSCCSC-CCCC---CTTCCEEECCSSCCSEES------------------------------CCCTTCCEEECCSSCCS
T ss_pred CCCcccc-cCcc---cCcCCEEECcCCccCccc------------------------------CcCCcCCEEECcCCcCC
Confidence 8888875 4433 367778888777764321 01246899999999998
Q ss_pred CCCcHhhhhc-CCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc--cCCC
Q 041121 442 GAVPEEIMDL-VGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG--KIPT 518 (574)
Q Consensus 442 ~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~ 518 (574)
+ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|+++. +|. .+++|+.|++++|++++ .+|.
T Consensus 311 ~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 311 S-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp E-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred c-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 4 22 23 589999999999996 4433 5899999999999995 555 47899999999999997 6776
Q ss_pred c-chh-------------cccCcccccCCCCCC
Q 041121 519 G-TQL-------------QSFNGSVYAGNPELC 537 (574)
Q Consensus 519 ~-~~~-------------~~l~~~~l~~Np~~c 537 (574)
. ..+ +.++.+++++|+...
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCC------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 5 223 678899999998775
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-35 Score=295.66 Aligned_cols=106 Identities=24% Similarity=0.254 Sum_probs=70.0
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|+++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++... +..+++|+.|++++
T Consensus 274 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCS
T ss_pred CCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCC
Confidence 466666666665 34445556677777777777776 34445666777777777777776442 56677888888888
Q ss_pred CcCcccCCCcchhcccCcccccCCCCCCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l 541 (574)
|++++. .....+..+....+.+++..|.++.
T Consensus 349 N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 349 NDWDCN-SLRALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp SCEEHH-HHHHHTTTCCTTTBCCCCSCCCTTC
T ss_pred CCccch-hHHHHHHHHHhhcccccCceecccc
Confidence 888742 2223455666667788888887654
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.6e-33 Score=287.65 Aligned_cols=348 Identities=17% Similarity=0.127 Sum_probs=237.9
Q ss_pred hcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
.+..+++|++|++++|.++++..+ .++|++|++++|++++. | +..+++|++|++++|.+++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~------------- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL------------- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-------------
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-------------
Confidence 567788888888888888876433 26788888888888754 3 77788888888888877743
Q ss_pred CccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCC-CCccc
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNS-LTDLA 189 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~ 189 (574)
.+..+++ |++|++++|++++. + +..+++|++|++++|++++. .+..+++|++|++++|. +..+
T Consensus 101 ---------~~~~l~~-L~~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~- 164 (457)
T 3bz5_A 101 ---------DVTPLTK-LTYLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL- 164 (457)
T ss_dssp ---------CCTTCTT-CCEEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-
T ss_pred ---------ecCCCCc-CCEEECCCCcCCee-c-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-
Confidence 2344566 88888888888764 2 77788888888888888764 26778888888888873 3222
Q ss_pred CccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCc
Q 041121 190 NIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPD 269 (574)
Q Consensus 190 ~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 269 (574)
.+..+++|+.|++++|++++.....+++|+.|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 165 -----------~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip- 228 (457)
T 3bz5_A 165 -----------DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID- 228 (457)
T ss_dssp -----------CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-
T ss_pred -----------ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-
Confidence 135567777777777777765433366777777777777765 25566777777777777775 34
Q ss_pred chhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChh
Q 041121 270 CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 270 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~ 349 (574)
+..+++|+.|++++|.+++..+ ..+++| +.+++++|
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~---~~l~~L-------------------------------~~L~l~~n--------- 264 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDV---STLSKL-------------------------------TTLHCIQT--------- 264 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCC---TTCTTC-------------------------------CEEECTTC---------
T ss_pred -ccccCCCCEEEeeCCcCCCcCH---HHCCCC-------------------------------CEEeccCC---------
Confidence 6667777777777777775432 233444 44554443
Q ss_pred hcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCc
Q 041121 350 LCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGL 429 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 429 (574)
+|+.|++++|.+.+.+| +..+++|+.+++++|..
T Consensus 265 -----~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~--------------------------------------- 298 (457)
T 3bz5_A 265 -----DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ--------------------------------------- 298 (457)
T ss_dssp -----CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT---------------------------------------
T ss_pred -----CCCEEECCCCccCCccc--ccccccCCEEECCCCcc---------------------------------------
Confidence 45666777777655554 45566676666665542
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
+..+..+.+.++ .+ .++++++|++|++++|++++. .+.++++|+.|++++|++++ ++.|..|++++
T Consensus 299 l~~l~~~~~~L~-~L--~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 299 LYLLDCQAAGIT-EL--DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CCEEECTTCCCS-CC--CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred cceeccCCCcce-Ee--chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 122222333333 11 145568999999999999975 38899999999999999985 24677788999
Q ss_pred CcCcccCCCcchhcccCcccccCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|.++|. ..+..+..+++++|...
T Consensus 365 n~l~g~----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 365 NNFEAE----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp TSEEEE----EEEEECCCBCCBTTBEE
T ss_pred CcEEec----ceeeecCccccccCcEE
Confidence 999876 24556666777777543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5e-34 Score=289.72 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=230.8
Q ss_pred CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSD 158 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~ 158 (574)
.++++++|++++|.++ .+|.. .|..+++ |++|++++|.+++..+. |.++++|++|++++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~------------------~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 102 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAA------------------LLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTH------------------HHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccCCceEEEecCCchh-hCChh------------------Hhccccc-CcEEECCCCcccccChhhccCCCCcCEEECCC
Confidence 4678888888888877 33432 4566777 99999999988887775 88889999999999
Q ss_pred cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCc
Q 041121 159 NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNR 238 (574)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~ 238 (574)
|.+.+..+..|.++++|++|++++|.++.++... +..+ ++|++|++++|.
T Consensus 103 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~l---------------------~~L~~L~L~~n~ 152 (390)
T 3o6n_A 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI---------FHNT---------------------PKLTTLSMSNNN 152 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTC---------------------TTCCEEECCSSC
T ss_pred CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH---------hcCC---------------------CCCcEEECCCCc
Confidence 9988877888888899999999988877544321 2333 444555555555
Q ss_pred ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcccee
Q 041121 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 239 i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+.++.+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...++|
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L----------------- 207 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAV----------------- 207 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSC-----------------
T ss_pred cCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcc-----------------
Confidence 5555555555666777777777766643 245566677777777666521 122233
Q ss_pred eeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcccccccccc
Q 041121 319 WELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398 (574)
Q Consensus 319 l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 398 (574)
+.+++++|.+..... ...++|++|++++|.+++. ..+
T Consensus 208 --------------~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l------------------------ 244 (390)
T 3o6n_A 208 --------------EELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWL------------------------ 244 (390)
T ss_dssp --------------SEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGG------------------------
T ss_pred --------------eEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHH------------------------
Confidence 556666666654322 1236788888888877642 122
Q ss_pred CCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCC
Q 041121 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478 (574)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 478 (574)
..+++|++|++++|.+++..|..|..+++|++|+|++|++++. +..+..+++|
T Consensus 245 --------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L 297 (390)
T 3o6n_A 245 --------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 297 (390)
T ss_dssp --------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTC
T ss_pred --------------------------cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCC
Confidence 3456679999999999988899999999999999999999854 5566789999
Q ss_pred CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCC
Q 041121 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 479 ~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l 541 (574)
++|++++|+++ .+|..+..+++|+.|++++|+|+ .+| ...++.++.+++++|||.|+|..
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~-~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC-chhhccCCEEEcCCCCccchhHH
Confidence 99999999999 45666888999999999999998 455 45678999999999999998653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7e-34 Score=304.30 Aligned_cols=333 Identities=20% Similarity=0.149 Sum_probs=176.8
Q ss_pred CcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc
Q 041121 58 SNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH 137 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~ 137 (574)
.+++.+++++|.+....+..+..+++|++|+|++|.+.+..|. .|..+++ |++|+|++|.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------~~~~l~~-L~~L~L~~n~ 110 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-------------------AFAYAHT-IQKLYMGFNA 110 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-------------------TTTTCTT-CCEEECCSSC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-------------------HhcCCCC-CCEEECCCCc
Confidence 3455555555555544444455555555555555555533332 3334444 5555555555
Q ss_pred ccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCC
Q 041121 138 FTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSN 216 (574)
Q Consensus 138 l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n 216 (574)
+++..+. |.++++|++|++++|.+++..+..|..+++|++|++++|.++.+... . +..+++|+.|++++|
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~-~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--------T-FQATTSLQNLQLSSN 181 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT--------T-TTTCTTCCEEECTTS
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh--------h-hhcCCcCcEEECcCC
Confidence 5554444 55555555555555555544444455555555555555554432211 1 233444444444444
Q ss_pred cccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccc
Q 041121 217 HFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296 (574)
Q Consensus 217 ~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 296 (574)
.+++.....+++|+.|++++|.+.+. ...++|+.|++++|.++...+...
T Consensus 182 ~l~~~~~~~l~~L~~L~l~~n~l~~l-----------------------------~~~~~L~~L~ls~n~l~~~~~~~~- 231 (597)
T 3oja_B 182 RLTHVDLSLIPSLFHANVSYNLLSTL-----------------------------AIPIAVEELDASHNSINVVRGPVN- 231 (597)
T ss_dssp CCSBCCGGGCTTCSEEECCSSCCSEE-----------------------------ECCTTCSEEECCSSCCCEEECSCC-
T ss_pred CCCCcChhhhhhhhhhhcccCccccc-----------------------------cCCchhheeeccCCcccccccccC-
Confidence 44433222234444444444444332 222344444444444432211111
Q ss_pred cccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccc
Q 041121 297 FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNN 376 (574)
Q Consensus 297 ~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 376 (574)
++| +.+++++|.+.+ +..+..+++|+.|+|++|.+++..|..|..
T Consensus 232 --~~L-------------------------------~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 232 --VEL-------------------------------TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp --SCC-------------------------------CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred --CCC-------------------------------CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 122 444555555443 234556666777777777766555555544
Q ss_pred cccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCE
Q 041121 377 FTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVA 456 (574)
Q Consensus 377 l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 456 (574)
+++ |+.|+|++|.++ .+|..+..+++|++
T Consensus 277 l~~--------------------------------------------------L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 277 MQR--------------------------------------------------LERLYISNNRLV-ALNLYGQPIPTLKV 305 (597)
T ss_dssp CSS--------------------------------------------------CCEEECTTSCCC-EEECSSSCCTTCCE
T ss_pred ccC--------------------------------------------------CCEEECCCCCCC-CCCcccccCCCCcE
Confidence 333 466666666665 34555555667777
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCC
Q 041121 457 LNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 457 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
|+|++|.++ .+|..+..+++|+.|++++|++.+.. +..+++|+.|++++|++++.. ....+..+....+.+++..
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~~~~~~~ 380 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAVDDADQH 380 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTBCCCCCC
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh-HHHHHHHHhhhcccccccc
Confidence 777777776 34555666677777777777776442 556677888888888887432 2234555556667788888
Q ss_pred CCCC
Q 041121 537 CGLP 540 (574)
Q Consensus 537 c~~~ 540 (574)
|+.+
T Consensus 381 C~~~ 384 (597)
T 3oja_B 381 CKID 384 (597)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8764
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-32 Score=275.60 Aligned_cols=83 Identities=29% Similarity=0.384 Sum_probs=52.9
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEe
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 506 (574)
+++|+.|++++|.+++. ..+..+++|++|++++|++++..+..|.++++|++|++++|++++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 33456666666666633 346666777777777777766666666677777777777777765544 66667777777
Q ss_pred ccCCcCc
Q 041121 507 LSYNNLS 513 (574)
Q Consensus 507 Ls~N~l~ 513 (574)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 7777664
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-33 Score=278.17 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=59.6
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++|++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 3346666666666532 3455666666666666666543 34556666666666666666555556666666666666
Q ss_pred cCCcCcccCCCcchhcccCcccccCCC
Q 041121 508 SYNNLSGKIPTGTQLQSFNGSVYAGNP 534 (574)
Q Consensus 508 s~N~l~~~~p~~~~~~~l~~~~l~~Np 534 (574)
++|++++..| ...++.++.+++++|+
T Consensus 319 ~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCccccccC-hhhhhccceeehhhhc
Confidence 6666663333 4455566666666665
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.6e-34 Score=278.30 Aligned_cols=259 Identities=28% Similarity=0.428 Sum_probs=181.9
Q ss_pred CCcEEEcCCCcccc--cccccccCCCCccEEECCC-CCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccc
Q 041121 228 NSSFLNLSKNRFSR--SISLCSISGSKLTYIDLSS-NLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304 (574)
Q Consensus 228 ~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l 304 (574)
.++.|+|++|.+.+ ..+..+..+++|++|++++ |.+.+..|..|..+++|++|++++|.+++..|..+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L--- 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL--- 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC---
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC---
Confidence 44455555555544 3344444555555555553 55555555555555555555555555555555555555555
Q ss_pred ccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc-cCccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT-AMTQE 383 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l 383 (574)
+++++++|.+.+..|..+..+++|++|++++|++++.+|..+..+. .|+.+
T Consensus 128 ----------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 128 ----------------------------VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp ----------------------------CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred ----------------------------CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 5555555555555555555555555555555555555555555554 55555
Q ss_pred cCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc
Q 041121 384 RSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH 463 (574)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 463 (574)
++++|.+.. ..+..+..+. |++|++++|.+++..|..|..+++|++|+|++|+
T Consensus 180 ~L~~N~l~~--------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 180 TISRNRLTG--------------------------KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSEEEE--------------------------ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCeeec--------------------------cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 555554431 1111222333 7999999999998899999999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCCCCC
Q 041121 464 LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLPLPN 543 (574)
Q Consensus 464 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~l~~ 543 (574)
+++..+. +..+++|++|++++|++++..|..|..+++|+.|++++|+++|.+|....++.++.+++.+||++|+.|++
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~- 310 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP- 310 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-
Confidence 9976665 78899999999999999999999999999999999999999999999888999999999999999998887
Q ss_pred CCC
Q 041121 544 KCR 546 (574)
Q Consensus 544 ~c~ 546 (574)
.|+
T Consensus 311 ~C~ 313 (313)
T 1ogq_A 311 ACT 313 (313)
T ss_dssp CCC
T ss_pred CCC
Confidence 573
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-33 Score=297.46 Aligned_cols=313 Identities=17% Similarity=0.154 Sum_probs=232.4
Q ss_pred CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 041121 80 HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSD 158 (574)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~ 158 (574)
.+.+++.+++++|.+.. +|.. .|..+++ |++|++++|.+++..+. |..+++|++|+|++
T Consensus 49 ~l~~l~~l~l~~~~l~~-lp~~------------------~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 108 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK-LPAA------------------LLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108 (597)
T ss_dssp GGCCCSEEEESSCEESE-ECTH------------------HHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCCceEEEeeCCCCCC-cCHH------------------HHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCC
Confidence 35667777777776663 3322 4556666 88888888888877765 78888888888888
Q ss_pred cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCc
Q 041121 159 NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNR 238 (574)
Q Consensus 159 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~ 238 (574)
|.+.+..+..|.++++|++|++++|.++.++... +.. +++|++|+|++|.
T Consensus 109 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---------~~~---------------------l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI---------FHN---------------------TPKLTTLSMSNNN 158 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTT---------------------CTTCCEEECCSSC
T ss_pred CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH---------hcc---------------------CCCCCEEEeeCCc
Confidence 8887777777788888888888887776443221 122 3556666666666
Q ss_pred ccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCcccee
Q 041121 239 FSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIV 318 (574)
Q Consensus 239 i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~ 318 (574)
+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ....+|
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L----------------- 213 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAV----------------- 213 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTC-----------------
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchh-----------------
Confidence 6666666677778888888888888754 255677888888888877632 223344
Q ss_pred eeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcccccccccc
Q 041121 319 WELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFV 398 (574)
Q Consensus 319 l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 398 (574)
+.+++++|.+....+.. .++|+.|+|++|.+++. ..+
T Consensus 214 --------------~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l------------------------ 250 (597)
T 3oja_B 214 --------------EELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWL------------------------ 250 (597)
T ss_dssp --------------SEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGG------------------------
T ss_pred --------------heeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhh------------------------
Confidence 67777777776443222 25677777777777641 222
Q ss_pred CCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCC
Q 041121 399 GPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSL 478 (574)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 478 (574)
..+++|+.|+|++|.+++..|..|..+++|++|+|++|++++. |..+..+++|
T Consensus 251 --------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L 303 (597)
T 3oja_B 251 --------------------------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTL 303 (597)
T ss_dssp --------------------------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTC
T ss_pred --------------------------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCC
Confidence 3456679999999999988899999999999999999999964 5567789999
Q ss_pred CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 479 DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 479 ~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+.|+|++|.+. .+|..+..+++|+.|+|++|+|++ +| ...++.+..+++++|||.|+|.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC-hhhcCCCCEEEeeCCCCCChhH
Confidence 99999999999 567778899999999999999984 44 3467899999999999999864
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-31 Score=264.43 Aligned_cols=287 Identities=18% Similarity=0.194 Sum_probs=199.4
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.++++++.++.++..+ .++|++|++++|.+.+..+..|.++++|++|++++|.++.+.. .. +..+++
T Consensus 35 l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~-~~~l~~ 103 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE--------KA-FSPLRK 103 (332)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------GG-STTCTT
T ss_pred CCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------hH-hhCcCC
Confidence 888888888887554434 2678888888888887777788888888888888887774422 11 456677
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N 285 (574)
|++|++++|.++...+...++|++|++++|.+.++.+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|
T Consensus 104 L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 7777777777775444445677888888888877777667777888888888888753 556667666 7888888888
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++ +|..+. ++| +.+++++|.+.+..+..+..+++|++|++++|+
T Consensus 183 ~l~~-l~~~~~--~~L-------------------------------~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 183 KLTG-IPKDLP--ETL-------------------------------NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp BCSS-CCSSSC--SSC-------------------------------SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred CCCc-cCcccc--CCC-------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 7774 333322 344 556666666666666666666666666666666
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|. .+++|++|++++|.++ .+|
T Consensus 229 l~~~~~~~~~--------------------------------------------------~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 229 IRMIENGSLS--------------------------------------------------FLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp CCCCCTTGGG--------------------------------------------------GCTTCCEEECCSSCCC-BCC
T ss_pred CCcCChhHhh--------------------------------------------------CCCCCCEEECCCCcCe-ecC
Confidence 6654444443 3444578888888887 677
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCC------CCCCEEeCCCCccc--ccCCCCccCCCCCCEEeccCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQL------KSLDFLDLSRNQLV--GGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~i~--~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
..+..+++|++|++++|++++..+..|.+. +.|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777888888888888888887766666543 56778888888776 5666777778888888887774
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=9e-31 Score=259.40 Aligned_cols=288 Identities=18% Similarity=0.185 Sum_probs=202.3
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.++++++.++..+..+. ++|++|++++|.+++..+..|.++++|++|++++|.++.+. |.. +..+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~-~~~l~~ 101 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--------PGA-FAPLVK 101 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--------TTT-TTTCTT
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--------HHH-hcCCCC
Confidence 6677777766664433332 56677777777776665566777777777777777665432 111 455666
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC--CCCcchhcCCCCcEEEccCc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG--KLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N 285 (574)
|++|++++|.++.......++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..|..+++|++|++++|
T Consensus 102 L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 6666776666665444445778888888888888777777788899999999988863 56777888889999999998
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++ +|..+. ++| +.+++++|.+.+..+..+..+++|++|++++|.
T Consensus 182 ~l~~-l~~~~~--~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 182 NITT-IPQGLP--PSL-------------------------------TELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCCS-CCSSCC--TTC-------------------------------SEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cccc-CCcccc--ccC-------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 8874 343332 455 777888888777777777777888888888887
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..+.. +++|++|++++|.++ .+|
T Consensus 228 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 228 ISAVDNGSLAN--------------------------------------------------TPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCEECTTTGGG--------------------------------------------------STTCCEEECCSSCCS-SCC
T ss_pred CceeChhhccC--------------------------------------------------CCCCCEEECCCCcCc-cCC
Confidence 77555544433 344588888888887 677
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccC------CCCCCEEeCCCCcccc--cCCCCccCCCCCCEEeccCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQ------LKSLDFLDLSRNQLVG--GIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
..+..+++|++|++++|++++..+..|.. .+.|+.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77888888888888888888777666643 3677888888887764 556777888888888888875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2e-30 Score=256.99 Aligned_cols=291 Identities=17% Similarity=0.153 Sum_probs=243.0
Q ss_pred CCCcEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccc
Q 041121 38 HSLKTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAII 116 (574)
Q Consensus 38 ~~L~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l 116 (574)
.++++++++++.++.++ .+.+.+++|++++|++++..+..|..+++|++|++++|.+++..|.
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------- 94 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---------------- 94 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT----------------
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH----------------
Confidence 37899999999888874 4568899999999999988788899999999999999999866565
Q ss_pred cccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCcccccc
Q 041121 117 QNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGK 196 (574)
Q Consensus 117 ~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~ 196 (574)
+|..+++ |++|++++|+++.....+. ++|++|++++|++.+..+..|.++++|++|++++|.++... .
T Consensus 95 ---~~~~l~~-L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~ 162 (330)
T 1xku_A 95 ---AFAPLVK-LERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG------I 162 (330)
T ss_dssp ---TTTTCTT-CCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG------B
T ss_pred ---HhcCCCC-CCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC------c
Confidence 5666777 9999999999986554443 79999999999999888888999999999999999886421 1
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDS 276 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 276 (574)
.+.. +..+++|++|++++|.++.......++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++
T Consensus 163 ~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 163 ENGA-FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp CTTG-GGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred Chhh-ccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 2222 677889999999999998766555789999999999999988888889999999999999999877888999999
Q ss_pred CcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCC---
Q 041121 277 LVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQF--- 353 (574)
Q Consensus 277 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~--- 353 (574)
|++|++++|.++ .+|..+..+++| +.+++++|++++..+..|+..
T Consensus 242 L~~L~L~~N~l~-~lp~~l~~l~~L-------------------------------~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 242 LRELHLNNNKLV-KVPGGLADHKYI-------------------------------QVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp CCEEECCSSCCS-SCCTTTTTCSSC-------------------------------CEEECCSSCCCCCCTTSSSCSSCC
T ss_pred CCEEECCCCcCc-cCChhhccCCCc-------------------------------CEEECCCCcCCccChhhcCCcccc
Confidence 999999999998 777788888888 889999999998877777543
Q ss_pred ---CCCCEEEccCCcccc--cCCccccccccCccccCCCCc
Q 041121 354 ---AFLQVLDLSLNNISG--KIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 354 ---~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l~l~~~~ 389 (574)
+.++.+++++|++.. ..|..|..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 788999999999864 556778888888888887763
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=9.5e-31 Score=259.40 Aligned_cols=289 Identities=21% Similarity=0.200 Sum_probs=243.8
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
++++++++++.++.+ ..+.+++++|++++|.++...+..|..+++|++|++++|++++..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------- 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK----------------- 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----------------
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----------------
Confidence 789999999998887 34568999999999999988888999999999999999999866565
Q ss_pred ccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccC
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKL 197 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~l 197 (574)
+|..+++ |++|++++|+++...+.+. ++|++|++++|++....+..|..+++|++|++++|.++... ..
T Consensus 97 --~~~~l~~-L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~ 165 (332)
T 2ft3_A 97 --AFSPLRK-LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG------FE 165 (332)
T ss_dssp --GSTTCTT-CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG------SC
T ss_pred --HhhCcCC-CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC------CC
Confidence 5666787 9999999999996555443 89999999999999777788999999999999999987422 11
Q ss_pred CchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCC
Q 041121 198 PDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSL 277 (574)
Q Consensus 198 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 277 (574)
|.. +..+ +|+.|++++|++++......++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 166 ~~~-~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGA-FDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTS-SCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred ccc-ccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 222 3445 89999999999998666667899999999999999988888899999999999999998888889999999
Q ss_pred cEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC-----
Q 041121 278 VILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ----- 352 (574)
Q Consensus 278 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~----- 352 (574)
+.|++++|.++ .+|..+..+++| +.+++++|++++..+..|+.
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L-------------------------------~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLL-------------------------------QVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTC-------------------------------CEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred CEEECCCCcCe-ecChhhhcCccC-------------------------------CEEECCCCCCCccChhHcccccccc
Confidence 99999999998 778788888888 88999999999887777765
Q ss_pred -CCCCCEEEccCCccc--ccCCccccccccCccccCCCCc
Q 041121 353 -FAFLQVLDLSLNNIS--GKIPKCFNNFTAMTQERSSDPT 389 (574)
Q Consensus 353 -~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~l~l~~~~ 389 (574)
.+.|+.|++++|++. ...+..|..++.|+.+++++|.
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 367899999999987 5677889999999998887653
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-34 Score=298.11 Aligned_cols=211 Identities=19% Similarity=0.104 Sum_probs=120.3
Q ss_pred CCCcEEEcCCCccccccccccc-----CCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCcccccCCC-----
Q 041121 227 SNSSFLNLSKNRFSRSISLCSI-----SGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFSGRIP----- 292 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----- 292 (574)
++|++|++++|.+.......+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+++...
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 5566666666666544332222 245777777777777643 35556667777777777777664321
Q ss_pred cccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccC----CChhhcCCCCCCEEEccCCcccc
Q 041121 293 DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK----TPFQLCQFAFLQVLDLSLNNISG 368 (574)
Q Consensus 293 ~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~----~~~~~~~~~~L~~L~L~~n~l~~ 368 (574)
..+..+++| +.+++++|.++.. ++..+..+++|++|++++|.+++
T Consensus 250 ~~~~~~~~L-------------------------------~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 250 GLLHPSSRL-------------------------------RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHTSTTCCC-------------------------------CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHhcCCCCc-------------------------------eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 111234444 6666777666543 34455556777777777777654
Q ss_pred cCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC----C
Q 041121 369 KIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA----V 444 (574)
Q Consensus 369 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~ 444 (574)
..+..+...- ....++|++|++++|.+++. +
T Consensus 299 ~~~~~l~~~l---------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 299 EGARLLCETL---------------------------------------------LEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp HHHHHHHHHH---------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred HHHHHHHHHh---------------------------------------------ccCCccceeeEcCCCCCchHHHHHH
Confidence 3332222110 00123456666666666543 2
Q ss_pred cHhhhhcCCCCEEeCCCCcCcccCCccccC-----CCCCCEEeCCCCcccc----cCCCCccCCCCCCEEeccCCcCc
Q 041121 445 PEEIMDLVGLVALNLSRNHLTGQNSPKIGQ-----LKSLDFLDLSRNQLVG----GIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 445 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~----~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+..+..+++|++|+|++|.+++..+..+.. .++|++|++++|++++ .++..+..+++|+.|++++|+++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 444555666677777766666443333322 4566677777766664 45555666666677777776665
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=6.3e-30 Score=264.53 Aligned_cols=252 Identities=21% Similarity=0.210 Sum_probs=188.2
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
....++.++..++..+...+++++.|+|++|.|+++.+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34567777777776555557889999999999999888888899999999999999988888889999999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC-c
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN-N 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n-~ 365 (574)
+++..+..|..+++| +.++|++|.+....+..|..+++|++|++++| .
T Consensus 135 l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKL-------------------------------RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp CSBCCTTTSSSCTTC-------------------------------CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CCccChhhhcccCCC-------------------------------CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence 987777778888888 88889999888877778888899999999884 4
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+....+..|.+++ +|+.|++++|.+++ +|
T Consensus 184 l~~i~~~~~~~l~--------------------------------------------------~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 184 LEYISEGAFEGLF--------------------------------------------------NLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCEECTTTTTTCT--------------------------------------------------TCCEEECTTSCCSS-CC
T ss_pred ccccChhhccCCC--------------------------------------------------CCCEEECCCCcccc-cc
Confidence 4433333454444 45677777777763 33
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQS 524 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 524 (574)
.+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|++..+.. ..+..
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 3566677777777777777666777777777777777777777766777777777777777777776333332 34566
Q ss_pred cCcccccCCCCCCCCCC
Q 041121 525 FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 525 l~~~~l~~Np~~c~~~l 541 (574)
++.+++++|||.|+|.+
T Consensus 292 L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCEEECCSSCEECSTTT
T ss_pred CCEEEccCCCcCCCCCc
Confidence 66777777777777764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=7.8e-30 Score=262.86 Aligned_cols=252 Identities=20% Similarity=0.208 Sum_probs=198.4
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 286 (574)
....++.++..++..+...+.+++.|+|++|.|.++.+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34567777777776665567889999999999999888888899999999999999987777889999999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC-c
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN-N 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n-~ 365 (574)
+++..+..|..+++| +.+++++|.+....+..|..+++|++|++++| .
T Consensus 124 l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKL-------------------------------KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp CSSCCTTTSCSCSSC-------------------------------CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred CCeeCHhHhhccccC-------------------------------ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCC
Confidence 987777778888888 88899999888877778888899999999884 4
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+....+..|.+ +++|++|++++|.++ .+|
T Consensus 173 l~~i~~~~~~~--------------------------------------------------l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 173 LSYISEGAFEG--------------------------------------------------LSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCEECTTTTTT--------------------------------------------------CSSCCEEECTTSCCS-SCC
T ss_pred cceeCcchhhc--------------------------------------------------ccccCeecCCCCcCc-ccc
Confidence 44333334444 444677888888877 444
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQS 524 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~ 524 (574)
.+..+++|++|+|++|++++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|+|++..+.. ..+..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 3677788888888888888777788888888888888888888777788888888888888888887433333 34677
Q ss_pred cCcccccCCCCCCCCCC
Q 041121 525 FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 525 l~~~~l~~Np~~c~~~l 541 (574)
++.+++++|||.|+|.+
T Consensus 281 L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 281 LERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCEEECCSSCEECSSTT
T ss_pred CCEEEcCCCCccCCCCc
Confidence 77888888888888865
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.2e-31 Score=256.75 Aligned_cols=247 Identities=27% Similarity=0.377 Sum_probs=168.1
Q ss_pred CcEEEccCCcccc--cCCC-CCCCCCCCEEEccC-cccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 128 LESLHLEVNHFTG--PIPD-LGGFSSMKRLYLSD-NLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 128 L~~L~L~~n~l~~--~~~~-l~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++.|++++|.+.+ ..+. +.++++|++|++++ |.+.+.+|..|..+++|++|++++|.++
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----------------- 114 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS----------------- 114 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-----------------
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-----------------
Confidence 6666666666665 4444 66666666666663 6665555666666666666665555443
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEcc
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLG 283 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 283 (574)
+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 115 -------------------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 115 -------------------------------------GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp -------------------------------------EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred -------------------------------------CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 2222334445666666666666665566666666666666666
Q ss_pred CcccccCCCccccccc-CccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 284 NNSFSGRIPDSMGFLQ-NIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 284 ~N~l~~~~~~~~~~l~-~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
+|.+++..|..+..++ +| +.+++++|.+.+..|..+..+. |++|+++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLF-------------------------------TSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp SSCCEEECCGGGGCCCTTC-------------------------------CEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCcccCcCCHHHhhhhhcC-------------------------------cEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 6666666666666655 55 6666666666666666666665 7888888
Q ss_pred CCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCC
Q 041121 363 LNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNG 442 (574)
Q Consensus 363 ~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 442 (574)
+|.+++..+..|..+ ++|+.|++++|.+++
T Consensus 206 ~N~l~~~~~~~~~~l--------------------------------------------------~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 206 RNMLEGDASVLFGSD--------------------------------------------------KNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSEEEECCGGGCCTT--------------------------------------------------SCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhcC--------------------------------------------------CCCCEEECCCCceee
Confidence 887776665555443 335778888888875
Q ss_pred CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcC
Q 041121 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 443 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l 512 (574)
.+|. +..+++|++|+|++|++++..|..|..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 5544 777888888888888888888888888888888888888888888776 7788888888988883
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-32 Score=286.58 Aligned_cols=257 Identities=16% Similarity=0.140 Sum_probs=165.4
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCCCCCccc-cCCC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQGSIPDSS-QHMV 82 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~~~~~~~-~~l~ 82 (574)
++|++|++++|++++.+ +...+..+++|++|++++|+++.. ....++|++|++++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56788899888887662 223477888899999999888743 1123788999999988875433333 2344
Q ss_pred ----CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCC-----C-CCCCCCCC
Q 041121 83 ----YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP-----D-LGGFSSMK 152 (574)
Q Consensus 83 ----~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~-----~-l~~l~~L~ 152 (574)
+|++|++++|.++......+.. .+..+++ |++|++++|.+++... . +...++|+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~---------------~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSS---------------TLRTLPT-LQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH---------------HTTSCTT-CCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHH---------------HHccCCc-eeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 6999999998887432222211 5666777 8999999988864322 1 33456899
Q ss_pred EEEccCccccccc----chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCC----CCC
Q 041121 153 RLYLSDNLLNGTI----NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGP----IPP 224 (574)
Q Consensus 153 ~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~----~~~ 224 (574)
+|++++|++++.. +..+..+++|++|++++|.+++.....+.. ......++|++|++++|.++.. ++.
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~----~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ----GLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH----HHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH----HHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 9999999887643 566777889999999998876433222211 1012345777777777776653 122
Q ss_pred C---CCCCcEEEcCCCccccccc-----ccccCCCCccEEECCCCCCCCC----CCcchhcCCCCcEEEccCccccc
Q 041121 225 L---PSNSSFLNLSKNRFSRSIS-----LCSISGSKLTYIDLSSNLLSGK----LPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 225 ~---~~~L~~L~L~~n~i~~~~~-----~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
. .++|++|++++|.+..... ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 1 4667777777776655332 1222456777777777776632 34455566777777777776653
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3e-29 Score=245.72 Aligned_cols=273 Identities=19% Similarity=0.195 Sum_probs=190.3
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC--CCcchhcCCCCcEEEccCcc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK--LPDCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~ 286 (574)
+.++++++.++..+...++++++|++++|.++.++...+..+++|++|++++|.++.. .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4566666666655544566777788888877777666677778888888888877632 24556677788888888887
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC-hhhcCCCCCCEEEccCCc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP-FQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~-~~~~~~~~L~~L~L~~n~ 365 (574)
++ .++..+..+++| +.+++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 90 i~-~l~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 90 VI-TMSSNFLGLEQL-------------------------------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp EE-EEEEEEETCTTC-------------------------------CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred cc-cChhhcCCCCCC-------------------------------CEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 77 345556667777 777888888776554 567777888888888888
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..+.++++|+.+++++|.+... ..+..+..+++|++|++++|.+++..|
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQEN-------------------------FLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGG-------------------------EECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred CCccchhhcccCcCCCEEECCCCccccc-------------------------cchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 7776777777777776666666654310 012233456677888888888887777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCEEeccCCcCcccCCCc---ch
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG---TQ 521 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~---~~ 521 (574)
..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+..+..++ +|+.|++++|++++..+.. ..
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 7888888888888888888877777788888888888888888887888888774 7888888888887543322 12
Q ss_pred hcccCcccccCCCCCCC
Q 041121 522 LQSFNGSVYAGNPELCG 538 (574)
Q Consensus 522 ~~~l~~~~l~~Np~~c~ 538 (574)
+...+.+.+..+...|.
T Consensus 273 l~~~~~~~~~~~~~~C~ 289 (306)
T 2z66_A 273 IKDQRQLLVEVERMECA 289 (306)
T ss_dssp HHHTGGGBSCGGGCBEE
T ss_pred HHhhhhhhccccccccC
Confidence 23333444445555554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=238.73 Aligned_cols=249 Identities=20% Similarity=0.169 Sum_probs=180.4
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc-c
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS-F 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l 287 (574)
+.++++++.++..+...++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 456777777766554557788888888888888887778888888888888888887778888888888888888887 7
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|+++
T Consensus 94 ~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 94 RSVDPATFHGLGRL-------------------------------HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CCCCTTTTTTCTTC-------------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccCHHHhcCCcCC-------------------------------CEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 76667777777777 77888888887777777777788888888888777
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
+..+..|..+ ++|++|++++|.+++..+..
T Consensus 143 ~~~~~~~~~l--------------------------------------------------~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 143 ALPDDTFRDL--------------------------------------------------GNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCTTTTTTC--------------------------------------------------TTCCEEECCSSCCCEECTTT
T ss_pred ccCHhHhccC--------------------------------------------------CCccEEECCCCcccccCHHH
Confidence 5444444433 33577777777777555556
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCc
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNG 527 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 527 (574)
|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|++.+..+....+..++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 77777777777777777777777777777777777777777766666677777777777777777754444333344444
Q ss_pred ccccCCCCCCC
Q 041121 528 SVYAGNPELCG 538 (574)
Q Consensus 528 ~~l~~Np~~c~ 538 (574)
.....+...|.
T Consensus 253 ~~~~~~~~~c~ 263 (285)
T 1ozn_A 253 FRGSSSEVPCS 263 (285)
T ss_dssp CCSEECCCBEE
T ss_pred cccccCccccC
Confidence 44555555443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-28 Score=238.82 Aligned_cols=280 Identities=20% Similarity=0.213 Sum_probs=223.2
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
-+.++.+++.++.++..+. ++|++|++++|+++...+..|.++++|++|++++|.++.+.. .|.. +..
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~-~~~--- 76 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC------CSQS-DFG--- 76 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE------EEHH-HHS---
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC------cccc-ccc---
Confidence 4688899988886655443 689999999999986666678999999999999998874421 1111 111
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCC-cchhcCCCCcEEEccCcc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLP-DCWWMFDSLVILDLGNNS 286 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~ 286 (574)
+++|++|++++|.+.+++. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 77 ------------------~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 77 ------------------TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ------------------CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ------------------ccccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 4677888888888886554 46688999999999999986654 578899999999999999
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceecc-CCChhhcCCCCCCEEEccCCc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG-KTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~-~~~~~~~~~~~L~~L~L~~n~ 365 (574)
+.+..+..+..+++| +.+++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 138 l~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 138 TRVAFNGIFNGLSSL-------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CEECSTTTTTTCTTC-------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCccchhhcccCcCC-------------------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 988888888888888 889999999986 577788889999999999999
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|.. +++|++|++++|.+++..+
T Consensus 187 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 187 LEQLSPTAFNS--------------------------------------------------LSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CCEECTTTTTT--------------------------------------------------CTTCCEEECTTSCCSBCCS
T ss_pred cCCcCHHHhcC--------------------------------------------------CCCCCEEECCCCccCccCh
Confidence 88766666544 4446999999999997777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCC-CCCEEeCCCCcccccCC--CCccCCCCCCEEeccCCcCcccCCCc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLK-SLDFLDLSRNQLVGGIP--SSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~--~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
..|..+++|++|+|++|++++..+..+..++ +|++|++++|++++.-+ .....+...+.+....+.+.+..|..
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 7899999999999999999999999999985 99999999999986422 12333445666677788888777764
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=248.77 Aligned_cols=276 Identities=18% Similarity=0.187 Sum_probs=146.0
Q ss_pred ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC---CCCCcEEEcCCCcccccccccc
Q 041121 171 QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL---PSNSSFLNLSKNRFSRSISLCS 247 (574)
Q Consensus 171 ~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~L~~n~i~~~~~~~~ 247 (574)
.++.....+.+++.++.++.. ..+++++|++++|.+++..+.. +++|++|++++|.++++.+..+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~------------~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSG------------LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTT------------CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCCeEeeCCCCCccccccc------------ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 455556667777666654421 1135666666666666544322 5566666666666666655556
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCC-cccccccCccccccccccccCccceeeecccccc
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP-DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQT 326 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~ 326 (574)
..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L------------------------- 151 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL------------------------- 151 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC-------------------------
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC-------------------------
Confidence 666666666666666664444446666666666666666664333 345555555
Q ss_pred ccccccceEEecCc-eeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccc
Q 041121 327 FESWEERFVRLKSN-KFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHH 405 (574)
Q Consensus 327 ~~~~~~~~l~L~~n-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 405 (574)
+.+++++| .+....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 152 ------~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L------------------------- 200 (353)
T 2z80_A 152 ------QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV------------------------- 200 (353)
T ss_dssp ------CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-------------------------
T ss_pred ------cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-------------------------
Confidence 55666665 3444445556666666666666666665555555555554
Q ss_pred ccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc---CCCCCCEEe
Q 041121 406 YSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG---QLKSLDFLD 482 (574)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ 482 (574)
++|++++|.++...+..+..+++|++|++++|++++..+..+. ..+.++.++
T Consensus 201 -------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 201 -------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp -------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred -------------------------CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 5555555555422222233345555555555555543332221 233444455
Q ss_pred CCCCcccc----cCCCCccCCCCCCEEeccCCcCcccCCCc--chhcccCcccccCCCCCCCCC
Q 041121 483 LSRNQLVG----GIPSSLSPLSVLSVMDLSYNNLSGKIPTG--TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 483 L~~N~i~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~~~l~~~~l~~Np~~c~~~ 540 (574)
++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. ..++.++.+++++||+.|+|+
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 55444443 13334445555555555555555 34432 234455555555555555554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=245.55 Aligned_cols=258 Identities=19% Similarity=0.122 Sum_probs=141.7
Q ss_pred CcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCC
Q 041121 128 LESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGT 206 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~ 206 (574)
|++|++++|++++..+. |.++++|++|++++|++++..+.+|.++++|++|++++|.++.++.. .+..++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~ 124 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS---------WFKPLS 124 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH---------HHTTCT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh---------HhCCCc
Confidence 77788887777776664 77777788888877777766677777777777777777776643221 122222
Q ss_pred CCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc-ccccCCCCccEEECCCC-CCCCCCCcchhcCCCCcEEEccC
Q 041121 207 SNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSN-LLSGKLPDCWWMFDSLVILDLGN 284 (574)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 284 (574)
+|++|++++|.+.+++. ..+..+++|++|++++| .+....+..|.++++|++|++++
T Consensus 125 ---------------------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 125 ---------------------SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp ---------------------TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ---------------------cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 33333333333333332 23444555555555555 24433444555555555555555
Q ss_pred cccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCC
Q 041121 285 NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLN 364 (574)
Q Consensus 285 N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n 364 (574)
|.+++..|..+..+++| +.+++++|.+.......+..+++|++|++++|
T Consensus 184 n~l~~~~~~~l~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNV-------------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp TTCCEECTTTTTTCSEE-------------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred CCcCccCHHHHhccccC-------------------------------CeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 55554444444444444 44444444443222222333444555555555
Q ss_pred cccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCC
Q 041121 365 NISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV 444 (574)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 444 (574)
.+++..+..+..
T Consensus 233 ~l~~~~~~~l~~-------------------------------------------------------------------- 244 (353)
T 2z80_A 233 DLDTFHFSELST-------------------------------------------------------------------- 244 (353)
T ss_dssp BCTTCCCC------------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 444322211110
Q ss_pred cHhhhhcCCCCEEeCCCCcCcc----cCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 445 PEEIMDLVGLVALNLSRNHLTG----QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 445 ~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
......++.++|+++.+++ .+|..+.++++|++|++++|+++.+.+..|..+++|+.|++++|++++..|
T Consensus 245 ---~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 ---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1123344445555544443 245566777777777777777775444456777888888888888876555
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.7e-27 Score=230.66 Aligned_cols=228 Identities=21% Similarity=0.186 Sum_probs=198.1
Q ss_pred cEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccc
Q 041121 230 SFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQ 309 (574)
Q Consensus 230 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~ 309 (574)
+.++++++.++.++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------- 82 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL-------- 82 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC--------
Confidence 67889999888775422 4789999999999997777889999999999999999998888888888888
Q ss_pred cccCccceeeeccccccccccccceEEecCce-eccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCC
Q 041121 310 FNRRTVFIVWELLTTQTFESWEERFVRLKSNK-FHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP 388 (574)
Q Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~ 388 (574)
+.+++++|. +....+..+..+++|++|++++|.+++..+..|.+
T Consensus 83 -----------------------~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------ 127 (285)
T 1ozn_A 83 -----------------------EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------ 127 (285)
T ss_dssp -----------------------CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------
T ss_pred -----------------------CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC------------
Confidence 889999997 77777888889999999999999988666655544
Q ss_pred ccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccC
Q 041121 389 TIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQN 468 (574)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 468 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..
T Consensus 128 --------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 128 --------------------------------------LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp --------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 444699999999999777778999999999999999999888
Q ss_pred CccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 469 SPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 469 ~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+..|.++++|++|++++|++++..|..|..+++|+.|++++|++++..+.. ..++.++.+++++||+.|+|++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 888999999999999999999999999999999999999999999544332 4678899999999999999986
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.7e-26 Score=236.40 Aligned_cols=246 Identities=20% Similarity=0.125 Sum_probs=179.6
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
..+.++.++..++.+ ..+.+++++|+|++|+++...+..|.++++|++|+|++|.+++..+.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~----------------- 106 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG----------------- 106 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-----------------
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-----------------
Confidence 467899999999888 45668899999999999988889999999999999999998855444
Q ss_pred ccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCC-CCCcccCccccc
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQN-SLTDLANIQIKG 195 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 195 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|+++...+..|..+++|++|++++| .+..++
T Consensus 107 --~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------ 177 (440)
T 3zyj_A 107 --AFNGLAN-LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS------ 177 (440)
T ss_dssp --GGTTCSS-CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC------
T ss_pred --hccCCcc-CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC------
Confidence 5667787 99999999999987776 899999999999999999888888999999999999984 444332
Q ss_pred cCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCC
Q 041121 196 KLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFD 275 (574)
Q Consensus 196 ~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 275 (574)
...+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+..|.+++
T Consensus 178 ---~~~~~~l~~L~~L~L~~n~l~~---------------------~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 231 (440)
T 3zyj_A 178 ---EGAFEGLSNLRYLNLAMCNLRE---------------------IP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231 (440)
T ss_dssp ---TTTTTTCSSCCEEECTTSCCSS---------------------CC--CCTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred ---cchhhcccccCeecCCCCcCcc---------------------cc--ccCCCcccCEEECCCCccCccChhhhccCc
Confidence 2224555666666666665553 22 133455666666666666655555666666
Q ss_pred CCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCC
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAF 355 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~ 355 (574)
+|+.|++++|.+++..+..|..+++| +.++|++|+++...+..|..+++
T Consensus 232 ~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIERNAFDNLQSL-------------------------------VEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp TCCEEECTTCCCCEECTTSSTTCTTC-------------------------------CEEECTTSCCCCCCTTTTSSCTT
T ss_pred cCCEEECCCCceeEEChhhhcCCCCC-------------------------------CEEECCCCCCCccChhHhccccC
Confidence 66666666666665555556656655 55666666666555556666677
Q ss_pred CCEEEccCCccc
Q 041121 356 LQVLDLSLNNIS 367 (574)
Q Consensus 356 L~~L~L~~n~l~ 367 (574)
|+.|+|++|++.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 777777777765
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.3e-26 Score=235.72 Aligned_cols=246 Identities=19% Similarity=0.124 Sum_probs=212.6
Q ss_pred CCcEEEccCCCCCCC-CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccc
Q 041121 39 SLKTLTSHSCYLRPL-SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQ 117 (574)
Q Consensus 39 ~L~~L~l~~n~l~~~-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~ 117 (574)
..+.++.++..++.+ ..+.+++++|+|++|++++..+..|..+++|++|+|++|.+++..+.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----------------- 117 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG----------------- 117 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----------------
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-----------------
Confidence 457899999999888 44668999999999999988899999999999999999999865554
Q ss_pred ccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC-CCCCcccCccccc
Q 041121 118 NMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ-NSLTDLANIQIKG 195 (574)
Q Consensus 118 ~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~ 195 (574)
+|.++++ |++|+|++|+++...+. |.++++|++|++++|+++...+..|..+++|++|++++ |.+..+
T Consensus 118 --~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i------- 187 (452)
T 3zyi_A 118 --AFNGLAS-LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI------- 187 (452)
T ss_dssp --TTTTCTT-CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-------
T ss_pred --hccCccc-CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-------
Confidence 5667777 99999999999987777 88999999999999999977788899999999999998 455433
Q ss_pred cCCchhhcCCCCCCeEeccCCcccCCCCCC--CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhc
Q 041121 196 KLPDLSSRFGTSNPGIDISSNHFEGPIPPL--PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWM 273 (574)
Q Consensus 196 ~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 273 (574)
+...+..+++|+.|++++|.+++. |.. +++|++|+|++|.+.++.+..+..+++|++|++++|.+++..+..|.+
T Consensus 188 --~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 188 --SEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp --CTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred --ChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 333357788999999999999875 333 789999999999999999989999999999999999999888999999
Q ss_pred CCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccC
Q 041121 274 FDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGK 345 (574)
Q Consensus 274 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~ 345 (574)
+++|+.|++++|.+++..+..+..+++| +.+++++|++...
T Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------------------~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 265 LASLVELNLAHNNLSSLPHDLFTPLRYL-------------------------------VELHLHHNPWNCD 305 (452)
T ss_dssp CTTCCEEECCSSCCSCCCTTSSTTCTTC-------------------------------CEEECCSSCEECS
T ss_pred CCCCCEEECCCCcCCccChHHhccccCC-------------------------------CEEEccCCCcCCC
Confidence 9999999999999998888888888888 8888888887643
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.9e-25 Score=236.81 Aligned_cols=270 Identities=23% Similarity=0.246 Sum_probs=217.4
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
.++++|++++|.++.+|. .+. ++|++|++++|.++.+....++|++|++++|+++. +|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~---~l~--~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD---CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCS---CCC--TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccCh---hhC--CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 369999999999998876 444 89999999999999987777999999999999984 454 789999999999
Q ss_pred CcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhc
Q 041121 92 NELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQ 171 (574)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~ 171 (574)
|.+++ +|. .+++ |+.|++++|+++.+.. .+++|++|++++|.+++. |. .
T Consensus 111 N~l~~-l~~----------------------~l~~-L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~---~ 159 (622)
T 3g06_A 111 NPLTH-LPA----------------------LPSG-LCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASL-PA---L 159 (622)
T ss_dssp CCCCC-CCC----------------------CCTT-CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---C
T ss_pred CcCCC-CCC----------------------CCCC-cCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCCc-CC---c
Confidence 99884 332 2344 8999999999886544 248899999999998853 33 3
Q ss_pred cCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCC
Q 041121 172 IFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGS 251 (574)
Q Consensus 172 l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~ 251 (574)
+++|+.|++++|.++.++ ..+++|+.|++++|.+++ +|..+++|+.|++++|.++.++. ..+
T Consensus 160 ~~~L~~L~L~~N~l~~l~-------------~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~----~~~ 221 (622)
T 3g06_A 160 PSELCKLWAYNNQLTSLP-------------MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA----LPS 221 (622)
T ss_dssp CTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCC----CCT
T ss_pred cCCCCEEECCCCCCCCCc-------------ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCC----CCC
Confidence 578899999999888543 235678999999999886 44557899999999999987654 248
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
+|++|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L------------------------------ 263 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGL------------------------------ 263 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTC------------------------------
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccC------------------------------
Confidence 89999999999985 44 456889999999999984 444 45666
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccccc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTA 379 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 379 (574)
+.+++++|+++ .+|..+..+++|+.|+|++|++++..+..+..++.
T Consensus 264 -~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 264 -LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 88999999999 56788999999999999999999887777666553
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.9e-28 Score=236.92 Aligned_cols=89 Identities=24% Similarity=0.293 Sum_probs=68.0
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCCCccCCCCCCEE
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV-GGIPSSLSPLSVLSVM 505 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~l~~l~~L~~L 505 (574)
+++|++|++++|.+++ +|..|..+++|++|+|++|+++. +|..+..+++|+.|++++|++. +..+..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 4456888899998884 44558888899999999998884 5667888888999999999888 6667778888888888
Q ss_pred eccC-CcCcccCC
Q 041121 506 DLSY-NNLSGKIP 517 (574)
Q Consensus 506 ~Ls~-N~l~~~~p 517 (574)
++++ +.++|..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 8874 34444333
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=7.7e-25 Score=232.12 Aligned_cols=262 Identities=24% Similarity=0.202 Sum_probs=192.4
Q ss_pred CcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCC
Q 041121 128 LESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTS 207 (574)
Q Consensus 128 L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~ 207 (574)
++.|++++|.++.++..+. ++|++|++++|.|+. +|. .+++|++|++++|.|+.++. .+++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~-------------~l~~ 102 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV-------------LPPG 102 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-------------CCTT
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-------------CCCC
Confidence 8899999999985544454 789999999999884 444 57889999999998875432 3567
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
|++|++++|.+++..+ .+.+|+.|++++|.+++++. .+++|++|++++|.+++. |. .+++|+.|++++|.+
T Consensus 103 L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp CCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred CCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCC
Confidence 8888888888876444 66778888888888776554 237788888888887743 33 345777888888877
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++ +| ..+++| +.+++++|.+.+... .+++|+.|++++|.++
T Consensus 174 ~~-l~---~~~~~L-------------------------------~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 174 TS-LP---MLPSGL-------------------------------QELSVSDNQLASLPT----LPSELYKLWAYNNRLT 214 (622)
T ss_dssp SC-CC---CCCTTC-------------------------------CEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CC-Cc---ccCCCC-------------------------------cEEECCCCCCCCCCC----ccchhhEEECcCCccc
Confidence 74 33 234445 667777777665322 2356777777777766
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
.+|.. +++|+.|++++|.+++ +|
T Consensus 215 -~l~~~-----------------------------------------------------~~~L~~L~Ls~N~L~~-lp-- 237 (622)
T 3g06_A 215 -SLPAL-----------------------------------------------------PSGLKELIVSGNRLTS-LP-- 237 (622)
T ss_dssp -SCCCC-----------------------------------------------------CTTCCEEECCSSCCSC-CC--
T ss_pred -ccCCC-----------------------------------------------------CCCCCEEEccCCccCc-CC--
Confidence 23211 2447899999999984 55
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
..+++|++|+|++|+|+. +|. .+++|+.|++++|+|+ .+|..+..+++|+.|+|++|++++.+|..
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 456889999999999985 443 5688999999999999 66788999999999999999999777654
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=6.3e-29 Score=266.68 Aligned_cols=409 Identities=13% Similarity=0.045 Sum_probs=218.7
Q ss_pred hhhhcCCCCCcEEECCCCCCCC----CC--------chhhh-cCCCCCCcEEEccCCCCCCC-----CCcC-CcccEEEc
Q 041121 5 LMRSLRLHSLRYLNLEENNLAN----CS--------DWFQV-IGKLHSLKTLTSHSCYLRPL-----SNIS-SNFVSIDL 65 (574)
Q Consensus 5 ~~~l~~l~~L~~L~Ls~n~i~~----~~--------~~~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~-~~L~~L~L 65 (574)
+..+..+++|++|+++++.... +| .|... +..+++|++|+|++|.+++. .... .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3456778889999998754211 01 11112 23788899999998877654 1112 34888888
Q ss_pred cCCc-CCC-CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccccc--
Q 041121 66 SFNQ-LQG-SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-- 141 (574)
Q Consensus 66 s~n~-i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-- 141 (574)
++|. ++. .++.....+++|++|+|++|.+.+.....+.. .+..+++ |++|++++|.+++.
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~---------------~~~~~~~-L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE---------------LAQHNTS-LEVLNFYMTEFAKISP 209 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH---------------HHHHCCC-CCEEECTTCCCSSCCH
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH---------------HHhcCCC-ccEEEeeccCCCccCH
Confidence 8886 221 12223347888888888888876543322221 3345666 88888888887632
Q ss_pred --CCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcc
Q 041121 142 --IPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHF 218 (574)
Q Consensus 142 --~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l 218 (574)
.+. +.++++|++|++++|.+.+ ++..+..+++|++|+++...... .. +..+.. +..+++|+.++++++..
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~-~~----~~~~~~-l~~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI-GM----PEKYMN-LVFPRKLCRLGLSYMGP 282 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT-TC----TTSSSC-CCCCTTCCEEEETTCCT
T ss_pred HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccccccccc-ch----HHHHHH-hhccccccccCccccch
Confidence 222 5567888888888888874 56778888888888887532110 00 011111 34455666666555322
Q ss_pred cCCCCCC---CCCCcEEEcCCCccccccc-ccccCCCCccEEECCCCCCCC-CCCcchhcCCCCcEEEccC---------
Q 041121 219 EGPIPPL---PSNSSFLNLSKNRFSRSIS-LCSISGSKLTYIDLSSNLLSG-KLPDCWWMFDSLVILDLGN--------- 284 (574)
Q Consensus 219 ~~~~~~~---~~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~--------- 284 (574)
.. +|.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.. ..+..+..+++|++|++++
T Consensus 283 ~~-l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 283 NE-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp TT-GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred hH-HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 11 1111 3445555555554432222 112344555555554 22211 1122223444555555541
Q ss_pred --cccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEcc
Q 041121 285 --NSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLS 362 (574)
Q Consensus 285 --N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~ 362 (574)
|.+++.. .......+++|++|+++
T Consensus 361 ~~~~~~~~~------------------------------------------------------~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 361 EEGLVSQRG------------------------------------------------------LIALAQGCQELEYMAVY 386 (592)
T ss_dssp TTCCCCHHH------------------------------------------------------HHHHHHHCTTCSEEEEE
T ss_pred ccCccCHHH------------------------------------------------------HHHHHhhCccCeEEEee
Confidence 2222111 11112234455555554
Q ss_pred CCcccccCCccccc-cccCccccCC----CCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 363 LNNISGKIPKCFNN-FTAMTQERSS----DPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 363 ~n~l~~~~~~~~~~-l~~L~~l~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
.|.+++..+..+.. +++|+.+++. .+.+...+. .......+..+++|+.|++++
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~---------------------~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL---------------------DNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---------------------HHHHHHHHHHCTTCCEEEEEC
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH---------------------HHHHHHHHHhCCCCCEEEEec
Confidence 44444333333322 4444444432 111110000 000011134566778888875
Q ss_pred Cc--CCCCCcHhhh-hcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCccccc-CCCCccCCCCCCEEeccCCcC
Q 041121 438 NK--LNGAVPEEIM-DLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVGG-IPSSLSPLSVLSVMDLSYNNL 512 (574)
Q Consensus 438 n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~-~~~~l~~l~~L~~L~Ls~N~l 512 (574)
|. +++..+..+. .+++|++|+|++|++++. .+..+.++++|++|++++|.+++. .+..+..+++|+.|++++|++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 43 5544444443 377888888888887753 344456778888888888887643 333445677888888888887
Q ss_pred c
Q 041121 513 S 513 (574)
Q Consensus 513 ~ 513 (574)
+
T Consensus 526 t 526 (592)
T 3ogk_B 526 S 526 (592)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.1e-25 Score=221.98 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=111.6
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCccccc---------
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGF--------- 297 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------- 297 (574)
++|++|+|++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 34444555555544 22334556677777777777776 55666777777777777777666666655432
Q ss_pred ccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCcccccc
Q 041121 298 LQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 298 l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+++| +.+++++|.++ .+|..+..+++|++|++++|.+++ +|..+.
T Consensus 182 l~~L-------------------------------~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~-- 226 (328)
T 4fcg_A 182 LVNL-------------------------------QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIH-- 226 (328)
T ss_dssp STTC-------------------------------CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGG--
T ss_pred CCCC-------------------------------CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhc--
Confidence 3333 44444444444 333444444444444444444442 222222
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 457 (574)
.+++|++|++++|.+.+.+|..|.++++|++|
T Consensus 227 ------------------------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 227 ------------------------------------------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ------------------------------------------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred ------------------------------------------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 23334556666655555555555556666666
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+|++|.+.+.+|..+.++++|++|++++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66665555555555556666666666666555555666666666666655555544
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.8e-25 Score=213.94 Aligned_cols=226 Identities=22% Similarity=0.195 Sum_probs=155.9
Q ss_pred EeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccC
Q 041121 211 IDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGR 290 (574)
Q Consensus 211 L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 290 (574)
++..+..+...+...++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 44445555544444456788888888888887777777888888888888888866677788888888888888888776
Q ss_pred CCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccccc-
Q 041121 291 IPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGK- 369 (574)
Q Consensus 291 ~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~- 369 (574)
.+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 92 ~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 140 (276)
T 2z62_A 92 ALGAFSGLSSL-------------------------------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (276)
T ss_dssp CTTTTTTCTTC-------------------------------CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ChhhhcCCccc-------------------------------cEEECCCCCccccCchhcccCCCCCEEECcCCccceec
Confidence 66677777776 6677777777666655666777777777777776642
Q ss_pred CCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhh
Q 041121 370 IPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIM 449 (574)
Q Consensus 370 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 449 (574)
+|..|.+ +++|++|++++|++++..+..|.
T Consensus 141 l~~~~~~--------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 141 LPEYFSN--------------------------------------------------LTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp CCGGGGG--------------------------------------------------CTTCCEEECCSSCCCEECGGGGH
T ss_pred Cchhhcc--------------------------------------------------CCCCCEEECCCCCCCcCCHHHhh
Confidence 2444433 33357777777777766666666
Q ss_pred hcCCCC----EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCC
Q 041121 450 DLVGLV----ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 450 ~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
.+.+|+ +|++++|++++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++..|.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 666666 6777777777655555443 3677777777777766666667777777777777777755553
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.6e-25 Score=220.71 Aligned_cols=222 Identities=23% Similarity=0.246 Sum_probs=175.6
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccc
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFT 306 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~ 306 (574)
..++.|+|++|.+..++. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L----- 152 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL----- 152 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC-----
T ss_pred cceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC-----
Confidence 456666666666664433 3445777888888888877 66777777888888888888777 667777777777
Q ss_pred ccccccCccceeeeccccccccccccceEEecCceeccCCChhhcC---------CCCCCEEEccCCcccccCCcccccc
Q 041121 307 QQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQ---------FAFLQVLDLSLNNISGKIPKCFNNF 377 (574)
Q Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l 377 (574)
+.+++++|++.+..|..+.. +++|++|++++|.++ .+|..+..
T Consensus 153 --------------------------~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~- 204 (328)
T 4fcg_A 153 --------------------------RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN- 204 (328)
T ss_dssp --------------------------CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-
T ss_pred --------------------------CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-
Confidence 77777777766666665543 777777777777776 55544433
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVAL 457 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 457 (574)
+++|++|++++|.++ .+|..+..+++|++|
T Consensus 205 -------------------------------------------------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 205 -------------------------------------------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp -------------------------------------------------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred -------------------------------------------------CCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence 455699999999999 566689999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCC
Q 041121 458 NLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNP 534 (574)
Q Consensus 458 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np 534 (574)
+|++|.+.+.+|..|.++++|++|++++|++.+.+|..+..+++|+.|+|++|++.+.+|.. ..++.+..+.+..|.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 567777777776653
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-27 Score=232.69 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=156.5
Q ss_pred ccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCC
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLP 198 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp 198 (574)
.+..+++ |++|++++|++++..+. |.++++|++|++++|++++..+ |..+++|++|++++|.++.++
T Consensus 29 ~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~--------- 96 (317)
T 3o53_A 29 LRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--------- 96 (317)
T ss_dssp HHTTGGG-CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE---------
T ss_pred HhccCCC-CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc---------
Confidence 4455666 88888888888876655 7888888888888888875554 778888888888888766432
Q ss_pred chhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCc
Q 041121 199 DLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278 (574)
Q Consensus 199 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 278 (574)
..++|+.|++++|.+++..+..+++ |++|++++|.+++..+..+..+++|+
T Consensus 97 -----~~~~L~~L~l~~n~l~~~~~~~~~~------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 97 -----VGPSIETLHAANNNISRVSCSRGQG------------------------KKNIYLANNKITMLRDLDEGCRSRVQ 147 (317)
T ss_dssp -----ECTTCCEEECCSSCCSEEEECCCSS------------------------CEEEECCSSCCCSGGGBCTGGGSSEE
T ss_pred -----CCCCcCEEECCCCccCCcCccccCC------------------------CCEEECCCCCCCCccchhhhccCCCC
Confidence 1245555555555555444333444 45555555555444444444455555
Q ss_pred EEEccCcccccCCCccc-ccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCC
Q 041121 279 ILDLGNNSFSGRIPDSM-GFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQ 357 (574)
Q Consensus 279 ~L~L~~N~l~~~~~~~~-~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~ 357 (574)
+|++++|.+++..+..+ ..+++| +.+++++|.+.+.. ....+++|+
T Consensus 148 ~L~Ls~N~l~~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~--~~~~l~~L~ 194 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAELAASSDTL-------------------------------EHLNLQYNFIYDVK--GQVVFAKLK 194 (317)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTC-------------------------------CEEECTTSCCCEEE--CCCCCTTCC
T ss_pred EEECCCCCCCcccHHHHhhccCcC-------------------------------CEEECCCCcCcccc--cccccccCC
Confidence 55555555544333333 234444 44555555544331 122367788
Q ss_pred EEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC
Q 041121 358 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS 437 (574)
Q Consensus 358 ~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 437 (574)
+|++++|++++. +..+.. +++|++|++++
T Consensus 195 ~L~Ls~N~l~~l-~~~~~~--------------------------------------------------l~~L~~L~L~~ 223 (317)
T 3o53_A 195 TLDLSSNKLAFM-GPEFQS--------------------------------------------------AAGVTWISLRN 223 (317)
T ss_dssp EEECCSSCCCEE-CGGGGG--------------------------------------------------GTTCSEEECTT
T ss_pred EEECCCCcCCcc-hhhhcc--------------------------------------------------cCcccEEECcC
Confidence 888888888743 333433 33457788888
Q ss_pred CcCCCCCcHhhhhcCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCCCC-cccccCCCC
Q 041121 438 NKLNGAVPEEIMDLVGLVALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRN-QLVGGIPSS 495 (574)
Q Consensus 438 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~ 495 (574)
|.++ .+|..+..+++|++|++++|.+. +..+..+..++.|+.|+++++ .+++..+..
T Consensus 224 N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp SCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred Cccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 8887 56667777888888888888887 666777778888888888744 555554443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.2e-25 Score=213.59 Aligned_cols=226 Identities=21% Similarity=0.183 Sum_probs=186.1
Q ss_pred EEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccccccc
Q 041121 231 FLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQF 310 (574)
Q Consensus 231 ~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~ 310 (574)
.++..+..+..++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 11 ~~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 78 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL--------- 78 (276)
T ss_dssp EEECTTSCCSSCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC---------
T ss_pred eEEecCCCccccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC---------
Confidence 4666777666655422 2579999999999987777788999999999999999987777788888888
Q ss_pred ccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCcc
Q 041121 311 NRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 390 (574)
Q Consensus 311 ~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~ 390 (574)
+.+++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus 79 ----------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------- 121 (276)
T 2z62_A 79 ----------------------STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--------------- 121 (276)
T ss_dssp ----------------------CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT---------------
T ss_pred ----------------------CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcc---------------
Confidence 8889999998888888888889999999999888755444443
Q ss_pred ccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCC-CcHhhhhcCCCCEEeCCCCcCcccCC
Q 041121 391 KVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA-VPEEIMDLVGLVALNLSRNHLTGQNS 469 (574)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 469 (574)
.+++|++|++++|.+++. +|..|..+++|++|++++|++++..+
T Consensus 122 -----------------------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 122 -----------------------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp -----------------------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred -----------------------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 345579999999999864 58999999999999999999998888
Q ss_pred ccccCCCCCC----EEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 470 PKIGQLKSLD----FLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 470 ~~~~~l~~L~----~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
..|..+++|+ +|++++|++++..+..+... +|+.|++++|++++..+.. ..++.++.+++++||+.|+|+.
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 8888777777 99999999998777766654 8999999999999444433 4588999999999999999973
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.6e-27 Score=230.45 Aligned_cols=249 Identities=19% Similarity=0.162 Sum_probs=197.7
Q ss_pred hcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCC--CC----------cCCcccEEEccCCcCCCCCC
Q 041121 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPL--SN----------ISSNFVSIDLSFNQLQGSIP 75 (574)
Q Consensus 8 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~----------~~~~L~~L~Ls~n~i~~~~~ 75 (574)
+...++|++|++++|.+ .+|. .+... |++|++++|.++.. .. -.++|++|++++|++++..|
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~---~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLG---QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCH---HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeeccccc-ccHH---HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 45667889999999999 6665 33333 88889999988653 11 14789999999999998888
Q ss_pred ccc--cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCC
Q 041121 76 DSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMK 152 (574)
Q Consensus 76 ~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~ 152 (574)
..+ ..+++|++|++++|++++. |..+..+ ....+++ |++|++++|++++..+. |.++++|+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l--------------~~~~~~~-L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAEL--------------QQWLKPG-LKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH--------------HTTCCTT-CCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHH--------------HHhhcCC-CcEEEeeCCCCccchHHHhccCCCCC
Confidence 876 8999999999999999866 6654432 1111266 99999999999988866 99999999
Q ss_pred EEEccCcccccc--cchhh--hccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCC--C-
Q 041121 153 RLYLSDNLLNGT--INKSI--GQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPP--L- 225 (574)
Q Consensus 153 ~L~L~~n~i~~~--~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~--~- 225 (574)
+|++++|++.+. .+..+ ..+++|++|++++|.++.++ .++...+..+++|++|++++|++++..|. .
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 999999998754 33444 88999999999999988543 12223256788999999999999986642 2
Q ss_pred -CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccccc
Q 041121 226 -PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 226 -~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
+++|++|++++|.|+.++...+ ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6899999999999996655332 8999999999999966 65 8899999999999999874
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.6e-28 Score=263.61 Aligned_cols=394 Identities=13% Similarity=0.061 Sum_probs=251.0
Q ss_pred hhcCCCCCcEEECCCCCCCCC-CchhhhcCC-CCC-CcEEEccCCCC-CCC-----CCcCCcccEEEccCCcCCCC----
Q 041121 7 RSLRLHSLRYLNLEENNLANC-SDWFQVIGK-LHS-LKTLTSHSCYL-RPL-----SNISSNFVSIDLSFNQLQGS---- 73 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~~-l~~-L~~L~l~~n~l-~~~-----~~~~~~L~~L~Ls~n~i~~~---- 73 (574)
.+..+++|++|+|++|.+++. .. .+.. ++. |++|++++|.- +.. ..-.++|++|+|++|.+++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~---~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLD---RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHH---HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHH---HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 344899999999999988765 33 3444 444 99999999872 211 12248999999999998765
Q ss_pred CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCE
Q 041121 74 IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKR 153 (574)
Q Consensus 74 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~ 153 (574)
++..+..+++|++|++++|.+++.....+.. .+..+++ |++|++++|.+.+....+..+++|++
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~---------------~~~~~~~-L~~L~L~~~~~~~l~~~~~~~~~L~~ 247 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLET---------------IARNCRS-LVSVKVGDFEILELVGFFKAAANLEE 247 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHH---------------HHHHCTT-CCEEECSSCBGGGGHHHHHHCTTCCE
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHH---------------HHhhCCC-CcEEeccCccHHHHHHHHhhhhHHHh
Confidence 3345568899999999999987444443332 3445666 77777777777654333666777777
Q ss_pred EEccCcccc---cccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCC----CCC
Q 041121 154 LYLSDNLLN---GTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP----PLP 226 (574)
Q Consensus 154 L~L~~n~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~----~~~ 226 (574)
|++++.... ...+..+..+++|+.|+++++... .+|.. +..+++|++|++++|.+++... ..+
T Consensus 248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~ 317 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN---------EMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKC 317 (592)
T ss_dssp EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT---------TGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTC
T ss_pred hcccccccccchHHHHHHhhccccccccCccccchh---------HHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhC
Confidence 777643222 223345566677777777664322 23333 4556677777777777543221 236
Q ss_pred CCCcEEEcCCCcccccc-cccccCCCCccEEECCC-----------CCCCCC-CCcchhcCCCCcEEEccCcccccCCCc
Q 041121 227 SNSSFLNLSKNRFSRSI-SLCSISGSKLTYIDLSS-----------NLLSGK-LPDCWWMFDSLVILDLGNNSFSGRIPD 293 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~-~~~~~~~~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~ 293 (574)
++|++|+++ +.+.... +.....+++|++|++++ |.+++. .+..+..+++|++|+++.|.+++..+.
T Consensus 318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 788888888 4443322 22224578899999983 555532 222345688999999988888765544
Q ss_pred cccc-ccCccccccccccccCccceeeeccccccccccccceEEec----CceeccC-----CChhhcCCCCCCEEEccC
Q 041121 294 SMGF-LQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK----SNKFHGK-----TPFQLCQFAFLQVLDLSL 363 (574)
Q Consensus 294 ~~~~-l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~----~n~~~~~-----~~~~~~~~~~L~~L~L~~ 363 (574)
.+.. +++| +.++++ .|.+++. ++..+..+++|++|++++
T Consensus 397 ~l~~~~~~L-------------------------------~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 397 SIGTYLKNL-------------------------------CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHCCSC-------------------------------CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHhhCCCC-------------------------------cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 4443 6666 666664 5555543 223356678888888875
Q ss_pred Cc--ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 364 NN--ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 364 n~--l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
+. +++.....+. ..+++|+.|++++|+++
T Consensus 446 ~~~~l~~~~~~~~~-------------------------------------------------~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 446 RQGGLTDLGLSYIG-------------------------------------------------QYSPNVRWMLLGYVGES 476 (592)
T ss_dssp CGGGCCHHHHHHHH-------------------------------------------------HSCTTCCEEEECSCCSS
T ss_pred CCCCccHHHHHHHH-------------------------------------------------HhCccceEeeccCCCCC
Confidence 33 4322221111 12556788999988887
Q ss_pred CC-CcHhhhhcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCcccccCCCCc-cCCCCCCEEeccCC
Q 041121 442 GA-VPEEIMDLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVGGIPSSL-SPLSVLSVMDLSYN 510 (574)
Q Consensus 442 ~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~l-~~l~~L~~L~Ls~N 510 (574)
+. ++..+.++++|++|+|++|.+++. .+..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 42 344557788899999999987644 33344578889999999998876433333 34566665555544
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.2e-25 Score=214.46 Aligned_cols=110 Identities=26% Similarity=0.278 Sum_probs=63.4
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|+++...++.|..+++|+.|++++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 45566666666544445556666666666666666655555555566666666666666655555555566666666666
Q ss_pred CcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|+|+ .+|.. .....++.+++++|||.|+|.
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 6665 44433 344455555566666666554
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.2e-24 Score=208.68 Aligned_cols=205 Identities=22% Similarity=0.235 Sum_probs=122.7
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
..+.++++++.++.++... .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L------ 87 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL------ 87 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC------
T ss_pred CCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC------
Confidence 4566777777777654322 2567777777777776555667777777777777777765444455555555
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+++++++|.+....+..|..+++|++|++++|.+++..+..|..
T Consensus 88 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 131 (270)
T 2o6q_A 88 -------------------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------- 131 (270)
T ss_dssp -------------------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred -------------------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------
Confidence 55666666665555555555556666666666555433333322
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 467 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 132 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 132 ---------------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 23346666666666644444566666666666666666655
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccC
Q 041121 468 NSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKI 516 (574)
Q Consensus 468 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~ 516 (574)
.+..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 5555666666666666666666555555666666666666666665433
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-26 Score=239.62 Aligned_cols=78 Identities=24% Similarity=0.272 Sum_probs=45.9
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc-ccCCCCccCCCCCCEEe
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV-GGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~l~~l~~L~~L~ 506 (574)
++|+.|+|++|.+++. |..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +..|..+..++.|+.++
T Consensus 191 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred CCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 3456777777777643 3346666677777777776664 3445566666666666666665 33444455555554444
Q ss_pred c
Q 041121 507 L 507 (574)
Q Consensus 507 L 507 (574)
+
T Consensus 269 ~ 269 (487)
T 3oja_A 269 K 269 (487)
T ss_dssp H
T ss_pred c
Confidence 4
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=9.7e-27 Score=228.18 Aligned_cols=245 Identities=23% Similarity=0.216 Sum_probs=163.2
Q ss_pred CCCCeEeccCCcccCCCCC-CCCCCcEEEcCCCcccccc-ccccc-------CCCCccEEECCCCCCCCCCCcch--hcC
Q 041121 206 TSNPGIDISSNHFEGPIPP-LPSNSSFLNLSKNRFSRSI-SLCSI-------SGSKLTYIDLSSNLLSGKLPDCW--WMF 274 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~L~~n~i~~~~-~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~--~~l 274 (574)
++|+.+++++|.+ .+|. ....++.|+|++|.+.... +..+. .+++|++|++++|.+++..|..+ ..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455555555555 2222 2333667777777775422 22221 47888888888888887777765 788
Q ss_pred CCCcEEEccCcccccCCCcccccc-----cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChh
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFL-----QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQ 349 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~ 349 (574)
++|++|++++|.+++. |..+..+ ++| +++++++|++.+..+..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L-------------------------------~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGL-------------------------------KVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTC-------------------------------CEEEEESCSCCCCCTTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCC-------------------------------cEEEeeCCCCccchHHH
Confidence 8888888888888866 7666666 666 77888888888777778
Q ss_pred hcCCCCCCEEEccCCcccccC--CccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccccc
Q 041121 350 LCQFAFLQVLDLSLNNISGKI--PKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTL 427 (574)
Q Consensus 350 ~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (574)
+..+++|++|++++|++.+.. +..+ .+..+
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------~~~~l 200 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISAL------------------------------------------------CPLKF 200 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHS------------------------------------------------CTTSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHH------------------------------------------------HhccC
Confidence 888888888888888865431 1111 01234
Q ss_pred CcccEEEccCCcCCCC---CcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCCCccCCCCCC
Q 041121 428 GLIKSLELSSNKLNGA---VPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLS 503 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~ 503 (574)
++|++|++++|.+++. ....+..+++|++|+|++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 5567777777777621 11334566778888888887776553 45556777888888888777 4555554 6777
Q ss_pred EEeccCCcCcccCCCcchhcccCcccccCCCCC
Q 041121 504 VMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPEL 536 (574)
Q Consensus 504 ~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~ 536 (574)
.|++++|+|++. |....++.++.+++++||+.
T Consensus 278 ~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred EEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 888888887743 66556677777777777754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.4e-23 Score=202.96 Aligned_cols=204 Identities=24% Similarity=0.243 Sum_probs=136.0
Q ss_pred hcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEE
Q 041121 202 SRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILD 281 (574)
Q Consensus 202 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 281 (574)
+..+++++.++++++.++..++..++.++.|+|++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 34555666666666666655444466777777777777777777777777777788777777643322 5667777777
Q ss_pred ccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEc
Q 041121 282 LGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDL 361 (574)
Q Consensus 282 L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L 361 (574)
+++|.++ .+|. .+..+++|++|++
T Consensus 84 Ls~N~l~-~l~~-------------------------------------------------------~~~~l~~L~~L~l 107 (290)
T 1p9a_G 84 LSHNQLQ-SLPL-------------------------------------------------------LGQTLPALTVLDV 107 (290)
T ss_dssp CCSSCCS-SCCC-------------------------------------------------------CTTTCTTCCEEEC
T ss_pred CCCCcCC-cCch-------------------------------------------------------hhccCCCCCEEEC
Confidence 7777665 3333 3445566677777
Q ss_pred cCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCC
Q 041121 362 SLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLN 441 (574)
Q Consensus 362 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 441 (574)
++|++++..+..|.+++ +|++|+|++|.++
T Consensus 108 ~~N~l~~l~~~~~~~l~--------------------------------------------------~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG--------------------------------------------------ELQELYLKGNELK 137 (290)
T ss_dssp CSSCCCCCCSSTTTTCT--------------------------------------------------TCCEEECTTSCCC
T ss_pred CCCcCcccCHHHHcCCC--------------------------------------------------CCCEEECCCCCCC
Confidence 77776654444444333 3467777777777
Q ss_pred CCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 442 GAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 442 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+....+|+.+++++|++.+
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666666677777777777777777666666677777777777777777 455556666677777777777763
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=201.21 Aligned_cols=205 Identities=22% Similarity=0.246 Sum_probs=179.8
Q ss_pred CCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCc
Q 041121 206 TSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN 285 (574)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 285 (574)
...+.++++++.++..+...+.++++|++++|.+.++.+..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35677888888888655555778999999999999998888999999999999999999777778899999999999999
Q ss_pred ccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCc
Q 041121 286 SFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNN 365 (574)
Q Consensus 286 ~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 365 (574)
.+++..+..+..+++| +.+++++|.+.+..+..|..+++|++|++++|.
T Consensus 96 ~l~~~~~~~~~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNL-------------------------------AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp CCCCCCTTTTTTCSSC-------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHhHcccccCC-------------------------------CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 9998777788889999 899999999999888889999999999999999
Q ss_pred ccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc
Q 041121 366 ISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP 445 (574)
Q Consensus 366 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 445 (574)
+++..+..|.. +++|++|++++|.+++..+
T Consensus 145 l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 145 LQSLPKGVFDK--------------------------------------------------LTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCTTTTTT--------------------------------------------------CTTCCEEECCSSCCSCCCT
T ss_pred CCccCHhHccC--------------------------------------------------CcccceeEecCCcCcEeCh
Confidence 98655544544 4446999999999997777
Q ss_pred HhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 446 EEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 446 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
..|..+++|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7899999999999999999988888899999999999999998753
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.8e-25 Score=229.11 Aligned_cols=244 Identities=21% Similarity=0.142 Sum_probs=149.1
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
+|++|+|++|.+.+..+..+..+++|++|++++|.+++..| |..+++|++|++++|.+++.. ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L------ 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI------ 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc------
Confidence 44444444444444444444445555555555555543322 444555555555555544221 11333
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+.+++++|.+.+..+. .+++|+.|+|++|.+++..|..+..+++|+.|++++
T Consensus 102 -------------------------~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 102 -------------------------ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp -------------------------CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred -------------------------CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 4455555554443322 234455555555555544444555555555555555
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccc-cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR-STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 466 (574)
|.+... .+..+ ..+++|+.|+|++|.+++. +. +..+++|++|+|++|.+++
T Consensus 154 N~l~~~--------------------------~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 154 NEIDTV--------------------------NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp SCCCEE--------------------------EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCc--------------------------ChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC
Confidence 444311 01111 2466789999999999855 32 3468999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc-ccCCCc-chhcccCccccc-------CCCCCC
Q 041121 467 QNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS-GKIPTG-TQLQSFNGSVYA-------GNPELC 537 (574)
Q Consensus 467 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~-~~~~~l~~~~l~-------~Np~~c 537 (574)
.++ .|..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.. ..+..+..+.+. +||+.|
T Consensus 206 ~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c 283 (487)
T 3oja_A 206 MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (487)
T ss_dssp ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCC
T ss_pred CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccc
Confidence 666 48899999999999999995 6777899999999999999998 444443 334445555554 899999
Q ss_pred CCCCC
Q 041121 538 GLPLP 542 (574)
Q Consensus 538 ~~~l~ 542 (574)
.|+..
T Consensus 284 ~~~~~ 288 (487)
T 3oja_A 284 TVPTL 288 (487)
T ss_dssp SSTTC
T ss_pred cCCcc
Confidence 88754
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.3e-26 Score=246.89 Aligned_cols=408 Identities=13% Similarity=0.045 Sum_probs=208.3
Q ss_pred hhcCCCCCcEEECCCCC-CCCC---C--------chhh-hcCCCCCCcEEEccCCCCCCC--CC---cCCcccEEEccCC
Q 041121 7 RSLRLHSLRYLNLEENN-LANC---S--------DWFQ-VIGKLHSLKTLTSHSCYLRPL--SN---ISSNFVSIDLSFN 68 (574)
Q Consensus 7 ~l~~l~~L~~L~Ls~n~-i~~~---~--------~~~~-~~~~l~~L~~L~l~~n~l~~~--~~---~~~~L~~L~Ls~n 68 (574)
.+..+++|++|+++++. +.+. + .|.. .+..+++|++|++++|.+++. .. ..++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45667888888888765 2211 1 0111 234677888888888876654 11 2367888888877
Q ss_pred -cCCCC-CCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc--ccc-cCC
Q 041121 69 -QLQGS-IPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH--FTG-PIP 143 (574)
Q Consensus 69 -~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~--l~~-~~~ 143 (574)
.++.. ++..+..+++|++|++++|.+++..+..+.. ....+++ |++|++++|. +.. ...
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~---------------~~~~~~~-L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH---------------FPDTYTS-LVSLNISCLASEVSFSALE 204 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG---------------SCTTCCC-CCEEECTTCCSCCCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH---------------HhhcCCc-CcEEEecccCCcCCHHHHH
Confidence 44432 3334456778888888887776554443332 2234556 8888888776 211 111
Q ss_pred C-CCCCCCCCEEEccCc-ccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeE-eccCCcccC
Q 041121 144 D-LGGFSSMKRLYLSDN-LLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGI-DISSNHFEG 220 (574)
Q Consensus 144 ~-l~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L-~l~~n~l~~ 220 (574)
. +..+++|++|++++| .+. .++..+..+++|++|+++.+... +..+.+.+ ++.. +..+++|+.+ .+......
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-l~~~-l~~~~~L~~Ls~~~~~~~~- 279 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAE-VRPDVYSG-LSVA-LSGCKELRCLSGFWDAVPA- 279 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCC-CCHHHHHH-HHHH-HHTCTTCCEEECCBTCCGG-
T ss_pred HHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCc-cchhhHHH-HHHH-HhcCCCcccccCCcccchh-
Confidence 1 234578888888877 333 36667777788888877655321 11112221 2221 4566666666 23222111
Q ss_pred CCCC---CCCCCcEEEcCCCccccccccc-ccCCCCccEEECCCCCCCCC-CCcchhcCCCCcEEEccC---------cc
Q 041121 221 PIPP---LPSNSSFLNLSKNRFSRSISLC-SISGSKLTYIDLSSNLLSGK-LPDCWWMFDSLVILDLGN---------NS 286 (574)
Q Consensus 221 ~~~~---~~~~L~~L~L~~n~i~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------N~ 286 (574)
.++. .+++|++|++++|.++...... +..+++|++|++++| +... .+.....+++|++|++++ +.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 1111 1355666666665544322111 224455666666555 2211 111222355566665532 22
Q ss_pred cccCCCcccc-cccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhc-CCCCCCEEEcc--
Q 041121 287 FSGRIPDSMG-FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLC-QFAFLQVLDLS-- 362 (574)
Q Consensus 287 l~~~~~~~~~-~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~-~~~~L~~L~L~-- 362 (574)
+++.....+. .+++| +.+.+..+.++......+. .+++|++|+++
T Consensus 359 l~~~~l~~l~~~~~~L-------------------------------~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKL-------------------------------ESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp CCHHHHHHHHHHCTTC-------------------------------CEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred CCHHHHHHHHHhchhH-------------------------------HHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 2211111111 12333 3444444444332222222 34555555555
Q ss_pred C----CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCC
Q 041121 363 L----NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN 438 (574)
Q Consensus 363 ~----n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 438 (574)
+ +.++....+. .....+..+++|+.|++++
T Consensus 408 ~~~~~~~l~~~~~~~---------------------------------------------~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDI---------------------------------------------GFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp STTCCCTTTCCCTHH---------------------------------------------HHHHHHHHCTTCCEEECCS-
T ss_pred cCCCcccccCCchhh---------------------------------------------HHHHHHhhCCCccEEeecC-
Confidence 2 2222110000 0001123455677777766
Q ss_pred cCCCCCcHhhhh-cCCCCEEeCCCCcCcccCCccc-cCCCCCCEEeCCCCcccccCCC-CccCCCCCCEEeccCCcCc
Q 041121 439 KLNGAVPEEIMD-LVGLVALNLSRNHLTGQNSPKI-GQLKSLDFLDLSRNQLVGGIPS-SLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 439 ~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~-~l~~l~~L~~L~Ls~N~l~ 513 (574)
.+++..+..+.. +++|++|+|++|.+++.....+ .++++|++|++++|.+++.... .+..+++|+.|++++|+++
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 555444444444 6777777777777765444333 5577777777777777543322 3445677777777777764
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3e-26 Score=245.92 Aligned_cols=394 Identities=12% Similarity=0.026 Sum_probs=261.4
Q ss_pred hhhcCCCCCcEEECCCCCCCCC-CchhhhcC-CCCCCcEEEccCC-CCCCC-----CCcCCcccEEEccCCcCCCCCCcc
Q 041121 6 MRSLRLHSLRYLNLEENNLANC-SDWFQVIG-KLHSLKTLTSHSC-YLRPL-----SNISSNFVSIDLSFNQLQGSIPDS 77 (574)
Q Consensus 6 ~~l~~l~~L~~L~Ls~n~i~~~-~~~~~~~~-~l~~L~~L~l~~n-~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~ 77 (574)
..+..+++|++|+|++|.+++. .. .+. .+++|++|++++| .++.. ..-.++|++|++++|.+++..+..
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLE---LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHH---HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHH---HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3346789999999999998766 33 454 6899999999999 55442 223489999999999987655444
Q ss_pred c----cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCC-cccccCCC-CCCCCCC
Q 041121 78 S----QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVN-HFTGPIPD-LGGFSSM 151 (574)
Q Consensus 78 ~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n-~l~~~~~~-l~~l~~L 151 (574)
+ ..+++|++|++++|. .......+.. .+..+++ |++|++++| .+.+ .+. +..+++|
T Consensus 176 l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~---------------l~~~~~~-L~~L~L~~~~~~~~-l~~~~~~~~~L 237 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA-SEVSFSALER---------------LVTRCPN-LKSLKLNRAVPLEK-LATLLQRAPQL 237 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC-SCCCHHHHHH---------------HHHHCTT-CCEEECCTTSCHHH-HHHHHHHCTTC
T ss_pred HHHHhhcCCcCcEEEecccC-CcCCHHHHHH---------------HHHhCCC-CcEEecCCCCcHHH-HHHHHhcCCcc
Confidence 4 477899999999987 2122232222 2344677 999999998 4444 444 7788999
Q ss_pred CEEEccC-------cccccccchhhhccCCCCEE-EccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC-
Q 041121 152 KRLYLSD-------NLLNGTINKSIGQIFKLEIT-CLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI- 222 (574)
Q Consensus 152 ~~L~L~~-------n~i~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~- 222 (574)
++|+++. +.+.+ .+..+.++++|+.| .+.+... +.++.. ...+++|++|++++|.+++..
T Consensus 238 ~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~---------~~l~~~-~~~~~~L~~L~L~~~~l~~~~l 306 (594)
T 2p1m_B 238 EELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP---------AYLPAV-YSVCSRLTTLNLSYATVQSYDL 306 (594)
T ss_dssp SEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG---------GGGGGG-HHHHTTCCEEECTTCCCCHHHH
T ss_pred eEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch---------hhHHHH-HHhhCCCCEEEccCCCCCHHHH
Confidence 9999554 44443 44578899999998 3433221 233333 446789999999999866422
Q ss_pred ---CCCCCCCcEEEcCCCcccccccccc-cCCCCccEEECCC---------CCCCCCCCcch-hcCCCCcEEEccCcccc
Q 041121 223 ---PPLPSNSSFLNLSKNRFSRSISLCS-ISGSKLTYIDLSS---------NLLSGKLPDCW-WMFDSLVILDLGNNSFS 288 (574)
Q Consensus 223 ---~~~~~~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 288 (574)
...+++|++|++++| +.......+ ..+++|++|++++ +.+++.....+ .++++|+.|+++.|.++
T Consensus 307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 123689999999988 443222222 2478999999843 44543222223 35899999999988887
Q ss_pred cCCCcccc-cccCccccccccccccCccceeeeccccccccccccceEEec--C----ceeccCC-----ChhhcCCCCC
Q 041121 289 GRIPDSMG-FLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLK--S----NKFHGKT-----PFQLCQFAFL 356 (574)
Q Consensus 289 ~~~~~~~~-~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~--~----n~~~~~~-----~~~~~~~~~L 356 (574)
+.....+. .+++| +.++++ + +.++... +..+..+++|
T Consensus 386 ~~~~~~l~~~~~~L-------------------------------~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 386 NAALITIARNRPNM-------------------------------TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp HHHHHHHHHHCTTC-------------------------------CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhCCCc-------------------------------ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 65444443 46777 777777 3 3444211 1225678899
Q ss_pred CEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEcc
Q 041121 357 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELS 436 (574)
Q Consensus 357 ~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 436 (574)
++|++++ .+++.....+.. .+++|+.|+++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~-------------------------------------------------~~~~L~~L~L~ 464 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGT-------------------------------------------------YAKKMEMLSVA 464 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHH-------------------------------------------------HCTTCCEEEEE
T ss_pred cEEeecC-cccHHHHHHHHH-------------------------------------------------hchhccEeecc
Confidence 9999977 554322222211 24557899999
Q ss_pred CCcCCCCCcHhh-hhcCCCCEEeCCCCcCcccCCc-cccCCCCCCEEeCCCCcccccCCCCc-cCCCCCCEEeccCCcCc
Q 041121 437 SNKLNGAVPEEI-MDLVGLVALNLSRNHLTGQNSP-KIGQLKSLDFLDLSRNQLVGGIPSSL-SPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 437 ~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~l-~~l~~L~~L~Ls~N~l~ 513 (574)
+|.+++.....+ .++++|++|+|++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-.
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 998875544444 6789999999999998644333 34557899999999998864333333 45677776666666543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.5e-23 Score=199.62 Aligned_cols=202 Identities=18% Similarity=0.166 Sum_probs=139.4
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+.+++.|++++|.+.... .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---- 111 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL---- 111 (272)
T ss_dssp HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----
T ss_pred ccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC----
Confidence 455566666666655443 244567777777777777642 356677777777777777776666666666666
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|++.+..+..+..+++|++|++++|.+++..+..|..
T Consensus 112 ---------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 155 (272)
T 3rfs_A 112 ---------------------------KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------- 155 (272)
T ss_dssp ---------------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------
T ss_pred ---------------------------CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc---------
Confidence 66777777776666666677777777777777776544443433
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
+++|+.|++++|.+++..+..|..+++|++|++++|+++
T Consensus 156 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 156 -----------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 334577888888887666666777888888888888888
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
+..+..|..+++|+.|++++|++.+. ++.|+.++++.|+++|.+|..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 77777777888888888888877633 446777888888888777763
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2e-22 Score=190.85 Aligned_cols=212 Identities=21% Similarity=0.186 Sum_probs=146.1
Q ss_pred CccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc
Q 041121 252 KLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
..++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L------------------------------ 61 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKL------------------------------ 61 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTC------------------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccC------------------------------
Confidence 3455666666665 3333322 356666666666665555556666666
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.+..+..|..+++|++|+|++|++++..+..|..
T Consensus 62 -~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------- 105 (251)
T 3m19_A 62 -TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH----------------------------------- 105 (251)
T ss_dssp -CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------------------
T ss_pred -CEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc-----------------------------------
Confidence 56666666666666666777888888888888888555555544
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++.
T Consensus 106 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 106 ---------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp ---------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 34468999999999877777788999999999999999988888899999999999999999988
Q ss_pred CCCCccCCCCCCEEeccCCcCcccCCCcchhc------ccCcccccCCCCCCCCCCCCCCCCC
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQ------SFNGSVYAGNPELCGLPLPNKCRDE 548 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~------~l~~~~l~~Np~~c~~~l~~~c~~~ 548 (574)
.+..|..+++|+.|++++|++++.......+. .....+..|+. .|+.+-...|..+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 88889999999999999999986544432211 11122233442 4555555567654
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=8.5e-23 Score=192.03 Aligned_cols=202 Identities=17% Similarity=0.242 Sum_probs=112.9
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCC-CCCCCCcchhcCCCCcEEEccC-cccccCCCcccccccCcc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNL-LSGKLPDCWWMFDSLVILDLGN-NSFSGRIPDSMGFLQNIQ 302 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 302 (574)
.+.++++|++++|.++++.+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.+++..+..
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-------- 100 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-------- 100 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS--------
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH--------
Confidence 44566666666666666666566666666666666665 6545555666666666666665 6665444444
Q ss_pred ccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCcc
Q 041121 303 TQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQ 382 (574)
Q Consensus 303 ~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 382 (574)
|..+++|++|++++|++++ +|. |..+++|
T Consensus 101 -----------------------------------------------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L-- 129 (239)
T 2xwt_C 101 -----------------------------------------------LKELPLLKFLGIFNTGLKM-FPD-LTKVYST-- 129 (239)
T ss_dssp -----------------------------------------------EECCTTCCEEEEEEECCCS-CCC-CTTCCBC--
T ss_pred -----------------------------------------------hCCCCCCCEEeCCCCCCcc-ccc-ccccccc--
Confidence 4445555555555555553 332 3332222
Q ss_pred ccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCC-cCCCCCcHhhhhcCCCC-EEeCC
Q 041121 383 ERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSN-KLNGAVPEEIMDLVGLV-ALNLS 460 (574)
Q Consensus 383 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~-~L~Ls 460 (574)
..|++|++++| .+++..+..|.++++|+ +|+++
T Consensus 130 ---------------------------------------------~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 130 ---------------------------------------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp ---------------------------------------------CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ---------------------------------------------ccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 11235666666 55544444566666666 66666
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCc-ccccCCCCccCC-CCCCEEeccCCcCcccCCCcchhcccCcccccCC
Q 041121 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQ-LVGGIPSSLSPL-SVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGN 533 (574)
Q Consensus 461 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~N 533 (574)
+|+++.+.+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|+++ .+|.. .+..++.+.+.++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 66665444444444 566666666663 665555556666 66666666666665 44443 4455555555544
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=9.9e-23 Score=202.94 Aligned_cols=240 Identities=17% Similarity=0.112 Sum_probs=152.6
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC-CCcchhcCCCCcE-EEccCcc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK-LPDCWWMFDSLVI-LDLGNNS 286 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~-L~L~~N~ 286 (574)
+.++.++++++.++...+.++++|+|++|+|+.+++.+|.++++|++|+|++|.+.+. .+.+|.+++++.+ +.++.|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4567777777755444567888899999988888888888888999999999887654 3457888887765 5566788
Q ss_pred cccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccC-Cc
Q 041121 287 FSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSL-NN 365 (574)
Q Consensus 287 l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~-n~ 365 (574)
+++..+..|..+++| +.+++++|++....+..+.....+..+++.+ +.
T Consensus 92 l~~l~~~~f~~l~~L-------------------------------~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 92 LLYINPEAFQNLPNL-------------------------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140 (350)
T ss_dssp CCEECTTSBCCCTTC-------------------------------CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTT
T ss_pred ccccCchhhhhcccc-------------------------------ccccccccccccCCchhhcccchhhhhhhccccc
Confidence 887778888888888 7888888888877776777777788888865 56
Q ss_pred ccccCCccccccc-cCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccC-CcCCCC
Q 041121 366 ISGKIPKCFNNFT-AMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSS-NKLNGA 443 (574)
Q Consensus 366 l~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ 443 (574)
+....+..|..+. .++.+++++|.+..++... + ...+|++|++++ |.++..
T Consensus 141 i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~--------------------------f-~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSA--------------------------F-NGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp CCEECTTSSTTSBSSCEEEECCSSCCCEECTTS--------------------------S-TTEEEEEEECTTCTTCCCC
T ss_pred cccccccchhhcchhhhhhccccccccCCChhh--------------------------c-cccchhHHhhccCCcccCC
Confidence 6655555665554 3444555555443221110 0 122356666653 445433
Q ss_pred CcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCC-cccccCCCCccCCCCCCEEeccCCc
Q 041121 444 VPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN-QLVGGIPSSLSPLSVLSVMDLSYNN 511 (574)
Q Consensus 444 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~Ls~N~ 511 (574)
.++.|.++++|++|+|++|+|+.+.+..| .+|+.|.+.++ .++ ..| .+..+++|+.++++++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCCc
Confidence 33456666666666666666664444333 33444443333 233 333 25556666666665443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.4e-22 Score=190.92 Aligned_cols=226 Identities=18% Similarity=0.203 Sum_probs=170.5
Q ss_pred CEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcE
Q 041121 152 KRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSF 231 (574)
Q Consensus 152 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 231 (574)
..+++.++.+... ..+..+++|+.|++++|.++.++. +..+ ++|++
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~-----------l~~l---------------------~~L~~ 67 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG-----------IQYL---------------------PNVRY 67 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTT-----------GGGC---------------------TTCCE
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccccc-----------cccC---------------------CCCcE
Confidence 3344444544422 335567788888888877764431 2333 45555
Q ss_pred EEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccc
Q 041121 232 LNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFN 311 (574)
Q Consensus 232 L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~ 311 (574)
|++++|.+.+.. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 68 L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---------- 135 (272)
T 3rfs_A 68 LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL---------- 135 (272)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC----------
Confidence 555555555432 45577888888888888887777778888888888888888887777777888888
Q ss_pred cCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccc
Q 041121 312 RRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 391 (574)
Q Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~ 391 (574)
+.+++++|.+.+..+..+..+++|++|++++|++++..+..|..
T Consensus 136 ---------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 179 (272)
T 3rfs_A 136 ---------------------TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK--------------- 179 (272)
T ss_dssp ---------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred ---------------------CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------
Confidence 88888888888777777888999999999999998665555544
Q ss_pred cccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcc
Q 041121 392 VYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPK 471 (574)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 471 (574)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 180 -----------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 219 (272)
T 3rfs_A 180 -----------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 219 (272)
T ss_dssp -----------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-----
T ss_pred -----------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-----
Confidence 3446899999999998888888999999999999998873
Q ss_pred ccCCCCCCEEeCCCCcccccCCCCccCCCC
Q 041121 472 IGQLKSLDFLDLSRNQLVGGIPSSLSPLSV 501 (574)
Q Consensus 472 ~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 501 (574)
.++.|+.|+++.|.+++.+|..++.+..
T Consensus 220 --~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 --TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp --CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred --cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 4668999999999999999988776543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.2e-22 Score=189.17 Aligned_cols=177 Identities=13% Similarity=0.099 Sum_probs=136.5
Q ss_pred CCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCce-eccCCChhhcCCC
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNK-FHGKTPFQLCQFA 354 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~-~~~~~~~~~~~~~ 354 (574)
+|++|++++|.+++..+..|..+++| +.+++++|+ +..+.+..|..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L-------------------------------~~L~l~~n~~l~~i~~~~f~~l~ 80 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNI-------------------------------SRIYVSIDVTLQQLESHSFYNLS 80 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTC-------------------------------CEEEEECCSSCCEECTTTEESCT
T ss_pred cccEEEEeCCcceEECHHHccCCCCC-------------------------------cEEeCCCCCCcceeCHhHcCCCc
Confidence 55566666666555555455555555 556666664 5555566777888
Q ss_pred CCCEEEccC-CcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEE
Q 041121 355 FLQVLDLSL-NNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSL 433 (574)
Q Consensus 355 ~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 433 (574)
+|++|++++ |.++...+..|.++++ |++|
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~--------------------------------------------------L~~L 110 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPL--------------------------------------------------LKFL 110 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTT--------------------------------------------------CCEE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCC--------------------------------------------------CCEE
Confidence 999999998 9998666666655444 5999
Q ss_pred EccCCcCCCCCcHhhhhcCCCC---EEeCCCC-cCcccCCccccCCCCCC-EEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 434 ELSSNKLNGAVPEEIMDLVGLV---ALNLSRN-HLTGQNSPKIGQLKSLD-FLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 434 ~Ls~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
++++|.+++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++.+.+..|.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 665 88899998 9999999 99988888899999999 9999999999666666666 899999999
Q ss_pred CCc-CcccCCCc-chh-cccCcccccCCCCC
Q 041121 509 YNN-LSGKIPTG-TQL-QSFNGSVYAGNPEL 536 (574)
Q Consensus 509 ~N~-l~~~~p~~-~~~-~~l~~~~l~~Np~~ 536 (574)
+|+ +++..+.. ..+ ..++.+++++|+..
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 995 98444443 345 78999999999754
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.2e-21 Score=185.62 Aligned_cols=183 Identities=21% Similarity=0.240 Sum_probs=152.7
Q ss_pred CCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCC
Q 041121 275 DSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFA 354 (574)
Q Consensus 275 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~ 354 (574)
...+.++++++.++ .+|..+. +.+ +.+++++|.+.+..+..|..++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l-------------------------------~~L~L~~n~l~~~~~~~~~~l~ 59 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADT-------------------------------EKLDLQSTGLATLSDATFRGLT 59 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTC-------------------------------CEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCC-------------------------------CEEEccCCCcCccCHhHhcCcc
Confidence 35678888888887 4454443 344 7788888888888887888888
Q ss_pred CCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEE
Q 041121 355 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLE 434 (574)
Q Consensus 355 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 434 (574)
+|++|+|++|.+++..+..|.+ +++|++|+
T Consensus 60 ~L~~L~L~~n~l~~~~~~~~~~--------------------------------------------------l~~L~~L~ 89 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAGVFDD--------------------------------------------------LTELGTLG 89 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTT--------------------------------------------------CTTCCEEE
T ss_pred cCCEEECCCCcCCccCHhHhcc--------------------------------------------------CCcCCEEE
Confidence 8888888888888666555544 44469999
Q ss_pred ccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcc
Q 041121 435 LSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 435 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998888889999999999999999998888889999999999999999998888889999999999999999995
Q ss_pred cCCCc-chhcccCcccccCCCCCCC-CCC
Q 041121 515 KIPTG-TQLQSFNGSVYAGNPELCG-LPL 541 (574)
Q Consensus 515 ~~p~~-~~~~~l~~~~l~~Np~~c~-~~l 541 (574)
..|.. ..+..++.+++++|||.|+ |.+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 198 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEI 198 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTH
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCcccc
Confidence 55543 4678899999999999998 654
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.3e-23 Score=208.60 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=71.2
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccccccccc-ccCcEEEccCCcccc
Q 041121 62 SIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLK-NSLESLHLEVNHFTG 140 (574)
Q Consensus 62 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~-~~L~~L~L~~n~l~~ 140 (574)
++.+++|++++.+|..+...++|++|++++|.+++..+..+.. ++..++ + |++|++++|++++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------~l~~~~~~-L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQ---------------AFANTPAS-VTSLNLSGNSLGF 65 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------HHHTCCTT-CCEEECCSSCGGG
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHH---------------HHHhCCCc-eeEEECcCCCCCH
Confidence 3566677777666666666666777777777777555533332 455555 5 7777777777776
Q ss_pred cCCC-CCCC-----CCCCEEEccCcccccccchhhhc----c-CCCCEEEccCCCCCccc
Q 041121 141 PIPD-LGGF-----SSMKRLYLSDNLLNGTINKSIGQ----I-FKLEITCLSQNSLTDLA 189 (574)
Q Consensus 141 ~~~~-l~~l-----~~L~~L~L~~n~i~~~~~~~~~~----l-~~L~~L~Ls~N~l~~l~ 189 (574)
..+. +..+ ++|++|++++|++++..+..+.. + ++|++|++++|.++...
T Consensus 66 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 66 KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 5443 4443 77777777777777655554333 3 67777777777766443
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.4e-23 Score=208.52 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=60.9
Q ss_pred cccEEEccCCcCCCC----CcHhhhh-cCCCCEEeCCCCcCcccCC----ccccCCCCCCEEeCCCCccccc-------C
Q 041121 429 LIKSLELSSNKLNGA----VPEEIMD-LVGLVALNLSRNHLTGQNS----PKIGQLKSLDFLDLSRNQLVGG-------I 492 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~-------~ 492 (574)
+|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+... .
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 467888888887643 3445555 3478888888888876544 3346678888888888874432 3
Q ss_pred CCCccCCCCCCEEeccCCcCccc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGK 515 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~ 515 (574)
+..+..+++|+.||+++|++...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 44677788888899999998754
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=194.81 Aligned_cols=223 Identities=23% Similarity=0.254 Sum_probs=140.6
Q ss_pred CCcEEEcCCCcccccccc---cccCCCCccEEECCCCCCCCCCCcch--hcCCCCcEEEccCcccccCCC----cccccc
Q 041121 228 NSSFLNLSKNRFSRSISL---CSISGSKLTYIDLSSNLLSGKLPDCW--WMFDSLVILDLGNNSFSGRIP----DSMGFL 298 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l 298 (574)
.++.+.+.++.+...... .+...++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 345555555555432111 11133567888888888777777666 777788888888887775444 122345
Q ss_pred cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccccc--C--Cccc
Q 041121 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGK--I--PKCF 374 (574)
Q Consensus 299 ~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~~ 374 (574)
++| +.+++++|.+.+..+..+..+++|++|+|++|++.+. . +..+
T Consensus 145 ~~L-------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 145 PGL-------------------------------KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp SCC-------------------------------CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred cCC-------------------------------CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 555 6677777777766666777777777777777776431 1 1111
Q ss_pred cccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcH----hhhh
Q 041121 375 NNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPE----EIMD 450 (574)
Q Consensus 375 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~ 450 (574)
. .+++|++|++++|.++ .++. .+..
T Consensus 194 ~--------------------------------------------------~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 194 H--------------------------------------------------KFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp T--------------------------------------------------SSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred h--------------------------------------------------cCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 2 3445677777777775 3333 2466
Q ss_pred cCCCCEEeCCCCcCcccCCccccCC---CCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCcchhcccCc
Q 041121 451 LVGLVALNLSRNHLTGQNSPKIGQL---KSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNG 527 (574)
Q Consensus 451 l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~ 527 (574)
+++|++|+|++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+|+ .+|....++.++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccE
Confidence 6777777777777776666666555 57777777777777 4455443 57777777777777 3344455677777
Q ss_pred ccccCCCCC
Q 041121 528 SVYAGNPEL 536 (574)
Q Consensus 528 ~~l~~Np~~ 536 (574)
+++++||+.
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 777777654
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=191.45 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=178.2
Q ss_pred CCCCcEEEccCCCCCCC--C---C--cCCcccEEEccCCcCCCCCCccc--cCCCCCCEEEccCCcCccCchhhhhcccC
Q 041121 37 LHSLKTLTSHSCYLRPL--S---N--ISSNFVSIDLSFNQLQGSIPDSS--QHMVYLEHLSLMFNELEGGIPKFFGNMLN 107 (574)
Q Consensus 37 l~~L~~L~l~~n~l~~~--~---~--~~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 107 (574)
...++.+.+.++.++.. . . ..++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+. +...
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~-- 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAEL-- 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHH--
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHH--
Confidence 34578888888877653 1 1 12579999999999998888888 8999999999999999864431 1111
Q ss_pred CCCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccc--c--chhhhccCCCCEEEccC
Q 041121 108 LSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGT--I--NKSIGQIFKLEITCLSQ 182 (574)
Q Consensus 108 L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~--~--~~~~~~l~~L~~L~Ls~ 182 (574)
.+..+++ |++|++++|++.+..+. |.++++|++|++++|++.+. . +..+..+++|++|++++
T Consensus 140 ------------~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 140 ------------QQWLKPG-LKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp ------------HTTBCSC-CCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ------------HhhhccC-CCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 4456777 99999999999988877 99999999999999998642 2 23357899999999999
Q ss_pred CCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCC------CCCCcEEEcCCCcccccccccccCCCCccEE
Q 041121 183 NSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPL------PSNSSFLNLSKNRFSRSISLCSISGSKLTYI 256 (574)
Q Consensus 183 N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L 256 (574)
|.++.++. .+...+..+++|++|++++|++.+..|.. +++|++|+|++|+|+.++... .++|++|
T Consensus 207 N~l~~l~~------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L 277 (310)
T 4glp_A 207 TGMETPTG------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVL 277 (310)
T ss_dssp SCCCCHHH------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCE
T ss_pred CCCCchHH------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEE
Confidence 99875432 11122467889999999999999875533 369999999999999765433 3899999
Q ss_pred ECCCCCCCCCCCcchhcCCCCcEEEccCccccc
Q 041121 257 DLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSG 289 (574)
Q Consensus 257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 289 (574)
++++|++++. |. +..+++|+.|++++|++++
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999999954 33 6788999999999999874
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3e-23 Score=209.92 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=161.2
Q ss_pred hhhhhhcCCCCCcEEECCCCCCCCC-C-chhhhcCCCCCCcEEEccCCCCCCCC--------------CcCCcccEEEcc
Q 041121 3 KLLMRSLRLHSLRYLNLEENNLANC-S-DWFQVIGKLHSLKTLTSHSCYLRPLS--------------NISSNFVSIDLS 66 (574)
Q Consensus 3 ~l~~~l~~l~~L~~L~Ls~n~i~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~~~~L~~L~Ls 66 (574)
.+++.+..+++|++|+|++|.++.. + .+...+..+++|++|++++|.+..+. .-.++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4667888899999999999988876 2 23345788999999999998665431 123677888888
Q ss_pred CCcCCC----CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc---------cccCcEEEc
Q 041121 67 FNQLQG----SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL---------KNSLESLHL 133 (574)
Q Consensus 67 ~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l---------~~~L~~L~L 133 (574)
+|.++. .++..+..+++|++|+|++|.++...+..+.. .+..+ ++ |++|++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~---------------~l~~l~~~~~~~~~~~-L~~L~L 166 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---------------ALQELAVNKKAKNAPP-LRSIIC 166 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---------------HHHHHHHHHHHHTCCC-CCEEEC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH---------------HHHHHhhhhhcccCCC-CcEEEC
Confidence 888775 35666777788888888888776444444332 22223 55 777777
Q ss_pred cCCcccc-cCC---C-CCCCCCCCEEEccCccccc-----ccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhc
Q 041121 134 EVNHFTG-PIP---D-LGGFSSMKRLYLSDNLLNG-----TINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSR 203 (574)
Q Consensus 134 ~~n~l~~-~~~---~-l~~l~~L~~L~L~~n~i~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~ 203 (574)
++|+++. ..+ . +..+++|++|++++|++.. ..+..+..+++|++|+|++|.++.... +.+|.. +.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~-l~ 241 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIA-LK 241 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHH-GG
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHH-Hc
Confidence 7777752 222 1 4566777777777777762 233366677777777777776642111 112221 22
Q ss_pred CCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccc----ccc--cCCCCccEEECCCCCCCC----CCCcch-h
Q 041121 204 FGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSIS----LCS--ISGSKLTYIDLSSNLLSG----KLPDCW-W 272 (574)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~--~~~~~L~~L~L~~n~l~~----~~~~~~-~ 272 (574)
. +++|++|+|++|.|++... ..+ ..+++|++|++++|.+++ .+|..+ .
T Consensus 242 ~---------------------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 242 S---------------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 300 (386)
T ss_dssp G---------------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred c---------------------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence 2 3456666666666655421 222 237888999999998885 256655 5
Q ss_pred cCCCCcEEEccCcccccCC
Q 041121 273 MFDSLVILDLGNNSFSGRI 291 (574)
Q Consensus 273 ~l~~L~~L~L~~N~l~~~~ 291 (574)
.+++|+.|++++|.+++..
T Consensus 301 ~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HCTTCCEEECTTSBSCTTS
T ss_pred cCCCceEEEccCCcCCcch
Confidence 5789999999999888655
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.3e-23 Score=210.74 Aligned_cols=253 Identities=19% Similarity=0.177 Sum_probs=163.9
Q ss_pred CCCCCCCCEEEccCcccccccc----hhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccC
Q 041121 145 LGGFSSMKRLYLSDNLLNGTIN----KSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEG 220 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~ 220 (574)
+..+++|++|++++|.+....+ ..|..+++|++|++++|.+..+. +.+|.. +
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~-----~~~~~~-~------------------ 83 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK-----DEIPEA-L------------------ 83 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG-----GGSHHH-H------------------
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc-----cchhHH-H------------------
Confidence 5566677777777777765433 33556677777777766554322 112211 0
Q ss_pred CCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC----CCCcchhcCCCCcEEEccCcccccCCCcccc
Q 041121 221 PIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG----KLPDCWWMFDSLVILDLGNNSFSGRIPDSMG 296 (574)
Q Consensus 221 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 296 (574)
. .....+..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 84 -------------------~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 143 (386)
T 2ca6_A 84 -------------------R-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143 (386)
T ss_dssp -------------------H-HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH
T ss_pred -------------------H-HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH
Confidence 0 000123456777777777777765 2455667777888888888877643333222
Q ss_pred c----c---------cCccccccccccccCccceeeeccccccccccccceEEecCceec-cCCC---hhhcCCCCCCEE
Q 041121 297 F----L---------QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFH-GKTP---FQLCQFAFLQVL 359 (574)
Q Consensus 297 ~----l---------~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~-~~~~---~~~~~~~~L~~L 359 (574)
. + ++| +.+++++|++. ...+ ..+..+++|++|
T Consensus 144 ~~l~~l~~~~~~~~~~~L-------------------------------~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 144 RALQELAVNKKAKNAPPL-------------------------------RSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHHHHHHTCCCC-------------------------------CEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhhhhcccCCCC-------------------------------cEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2 2 444 66667766665 2233 355667788888
Q ss_pred EccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc
Q 041121 360 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK 439 (574)
Q Consensus 360 ~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 439 (574)
++++|+++......+ .+..+..+++|+.|+|++|.
T Consensus 193 ~L~~n~l~~~g~~~l---------------------------------------------~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHL---------------------------------------------LLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp ECCSSCCCHHHHHHH---------------------------------------------HHTTGGGCTTCCEEECCSSC
T ss_pred ECcCCCCCHhHHHHH---------------------------------------------HHHHhhcCCCccEEECcCCC
Confidence 888887762110000 00012345667999999999
Q ss_pred CC----CCCcHhhhhcCCCCEEeCCCCcCccc----CCcccc--CCCCCCEEeCCCCcccc----cCCCCc-cCCCCCCE
Q 041121 440 LN----GAVPEEIMDLVGLVALNLSRNHLTGQ----NSPKIG--QLKSLDFLDLSRNQLVG----GIPSSL-SPLSVLSV 504 (574)
Q Consensus 440 l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~L~~N~i~~----~~~~~l-~~l~~L~~ 504 (574)
++ ..+|..+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.++. .+|..+ ..+++|+.
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 85 46778889999999999999999865 455663 38999999999999997 366666 66899999
Q ss_pred EeccCCcCcccCC
Q 041121 505 MDLSYNNLSGKIP 517 (574)
Q Consensus 505 L~Ls~N~l~~~~p 517 (574)
|++++|++++..|
T Consensus 308 L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 308 LELNGNRFSEEDD 320 (386)
T ss_dssp EECTTSBSCTTSH
T ss_pred EEccCCcCCcchh
Confidence 9999999996554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=9.5e-21 Score=188.58 Aligned_cols=212 Identities=15% Similarity=0.159 Sum_probs=157.1
Q ss_pred cEEEccCCCCCCCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCcccccccc
Q 041121 41 KTLTSHSCYLRPLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNM 119 (574)
Q Consensus 41 ~~L~l~~n~l~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~ 119 (574)
++++.++++++.++ ++.+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~------------------ 73 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD------------------ 73 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT------------------
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh------------------
Confidence 56777777787773 45678888888888888767778899999999999999886555432
Q ss_pred ccccccccCcE-EEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccC-CCCCcccCcccccc
Q 041121 120 SSGCLKNSLES-LHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQ-NSLTDLANIQIKGK 196 (574)
Q Consensus 120 ~~~~l~~~L~~-L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~~ 196 (574)
+|.++++ +++ +.+..|+++.+.+. |.++++|++|++++|++....+..+....++..|++.+ +.+..++...|.+
T Consensus 74 ~f~~L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~- 151 (350)
T 4ay9_X 74 VFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG- 151 (350)
T ss_dssp SBCSCTT-CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-
T ss_pred Hhhcchh-hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhh-
Confidence 6666776 554 56677888887777 88889999999999988877666777777788888855 4566554433321
Q ss_pred CCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECC-CCCCCCCCCcchhcCC
Q 041121 197 LPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLS-SNLLSGKLPDCWWMFD 275 (574)
Q Consensus 197 lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~ 275 (574)
....++.|+|++|+|+.+....| ...++++|+++ +|.++.+.+++|.+++
T Consensus 152 ----------------------------~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 152 ----------------------------LSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp ----------------------------SBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred ----------------------------cchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCc
Confidence 12356778888888887777665 44678899987 4778766667889999
Q ss_pred CCcEEEccCcccccCCCcccccccCc
Q 041121 276 SLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 276 ~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
+|++||+++|+++...+..+..+++|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ccchhhcCCCCcCccChhhhccchHh
Confidence 99999999999986655566655554
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1e-20 Score=184.72 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=128.2
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQF 305 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 305 (574)
+++|++|++++|.+..+. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 40 l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L---- 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI---- 109 (308)
T ss_dssp HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC----
T ss_pred cCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC----
Confidence 345555666666555443 34456677777777776664333 66667777777777766642 245555555
Q ss_pred cccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccC
Q 041121 306 TQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 385 (574)
Q Consensus 306 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l 385 (574)
+.+++++|.+.+.. .+..+++|++|++++|.+++..+ +.
T Consensus 110 ---------------------------~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~---------- 148 (308)
T 1h6u_A 110 ---------------------------KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LA---------- 148 (308)
T ss_dssp ---------------------------CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GG----------
T ss_pred ---------------------------CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--cc----------
Confidence 66666666666432 26667777777777777663322 22
Q ss_pred CCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCc
Q 041121 386 SDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLT 465 (574)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 465 (574)
.+++|+.|++++|.+++ ++. +..+++|++|++++|+++
T Consensus 149 ----------------------------------------~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 149 ----------------------------------------GLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ----------------------------------------GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------CCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 34556888888888874 333 778888888888888887
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCC
Q 041121 466 GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 466 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++ ..|
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~-~~~ 233 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQP 233 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE-CCC
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee-cCC
Confidence 5443 7778888888888888886553 778888888888888887 444
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.5e-22 Score=197.40 Aligned_cols=208 Identities=18% Similarity=0.188 Sum_probs=124.5
Q ss_pred CCCcEEEcCCCccccc-ccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCc-ccccC-CCcccccccCccc
Q 041121 227 SNSSFLNLSKNRFSRS-ISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNN-SFSGR-IPDSMGFLQNIQT 303 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~ 303 (574)
++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-- 170 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-- 170 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC--
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC--
Confidence 4455555555554432 2333445566666666666665445555566666666666666 34431 23334444444
Q ss_pred cccccccccCccceeeeccccccccccccceEEecCc-eeccC-CChhhcCCC-CCCEEEccCCc--cc-ccCCcccccc
Q 041121 304 QFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSN-KFHGK-TPFQLCQFA-FLQVLDLSLNN--IS-GKIPKCFNNF 377 (574)
Q Consensus 304 l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n-~~~~~-~~~~~~~~~-~L~~L~L~~n~--l~-~~~~~~~~~l 377 (574)
+.+++++| .+++. .+..+..++ +|++|++++|. ++ +.++..
T Consensus 171 -----------------------------~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---- 217 (336)
T 2ast_B 171 -----------------------------DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---- 217 (336)
T ss_dssp -----------------------------CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----
T ss_pred -----------------------------CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH----
Confidence 45555555 44432 334455666 77777777763 32 111111
Q ss_pred ccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCc-CCCCCcHhhhhcCCCCE
Q 041121 378 TAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNK-LNGAVPEEIMDLVGLVA 456 (574)
Q Consensus 378 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 456 (574)
+..+++|+.|++++|. +++..+..+..+++|++
T Consensus 218 ----------------------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 218 ----------------------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp ----------------------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred ----------------------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 2345567888888888 66666778888888899
Q ss_pred EeCCCCc-CcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCEEeccCCcCcccCCCc
Q 041121 457 LNLSRNH-LTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 457 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~ 519 (574)
|++++|. +.......+.++++|++|++++| +. .+.+..+. .+..|++++|++++..|..
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 9998885 33222235778888999999888 33 33444443 4777778889988777764
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.4e-20 Score=180.98 Aligned_cols=195 Identities=21% Similarity=0.217 Sum_probs=159.0
Q ss_pred ccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCc
Q 041121 120 SSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPD 199 (574)
Q Consensus 120 ~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~ 199 (574)
.+..+++ |++|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++.
T Consensus 36 ~~~~l~~-L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------- 102 (308)
T 1h6u_A 36 TQADLDG-ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--------- 102 (308)
T ss_dssp CHHHHHT-CCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG---------
T ss_pred cHHHcCC-cCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh---------
Confidence 4556787 99999999999864 468889999999999999986554 8999999999999999886531
Q ss_pred hhhcCCCCCCeEeccCCcccCCCC-CCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCc
Q 041121 200 LSSRFGTSNPGIDISSNHFEGPIP-PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLV 278 (574)
Q Consensus 200 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 278 (574)
+..+++|+.|++++|.+++..+ ..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 103 --~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 103 --IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp --GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred --hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 5678899999999999887543 227889999999999887765 6678899999999999885433 88889999
Q ss_pred EEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCE
Q 041121 279 ILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQV 358 (574)
Q Consensus 279 ~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~ 358 (574)
.|++++|.+++..+ +..+++| +.+++++|++.+.. .+..+++|+.
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L-------------------------------~~L~L~~N~l~~~~--~l~~l~~L~~ 221 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNL-------------------------------IEVHLKNNQISDVS--PLANTSNLFI 221 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTC-------------------------------CEEECTTSCCCBCG--GGTTCTTCCE
T ss_pred EEECCCCccCcChh--hcCCCCC-------------------------------CEEEccCCccCccc--cccCCCCCCE
Confidence 99999999885443 6777777 88899999888655 3788889999
Q ss_pred EEccCCcccc
Q 041121 359 LDLSLNNISG 368 (574)
Q Consensus 359 L~L~~n~l~~ 368 (574)
|++++|++++
T Consensus 222 L~l~~N~i~~ 231 (308)
T 1h6u_A 222 VTLTNQTITN 231 (308)
T ss_dssp EEEEEEEEEC
T ss_pred EEccCCeeec
Confidence 9999998874
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.8e-21 Score=193.10 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccc--cccCcEEEccCCcccccCCCCCCCCCCCEEEccCcc
Q 041121 83 YLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCL--KNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNL 160 (574)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l--~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~ 160 (574)
.+++++++++.+. +. .+..+ +. ++.|++++|.+.+..+.+..+++|++|++++|.
T Consensus 48 ~~~~l~l~~~~~~---~~-------------------~~~~~~~~~-l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PD-------------------VTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TSSEEECTTCBCC---HH-------------------HHHHHHHTT-CSEEECTTCEECSCCCSCCCCBCCCEEECTTCE
T ss_pred hheeeccccccCC---HH-------------------HHHhhhhcc-ceEEEcCCccccccchhhccCCCCCEEEccCCC
Confidence 4788888888765 33 23333 55 999999999999877777789999999999999
Q ss_pred cccc-cchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCC-c
Q 041121 161 LNGT-INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKN-R 238 (574)
Q Consensus 161 i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n-~ 238 (574)
+.+. .+..+..+++|++|++++|.++.. .+.. +..+ ++|++|++++| .
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--------~~~~-l~~~---------------------~~L~~L~L~~~~~ 154 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDP--------IVNT-LAKN---------------------SNLVRLNLSGCSG 154 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHH--------HHHH-HTTC---------------------TTCSEEECTTCBS
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHH--------HHHH-HhcC---------------------CCCCEEECCCCCC
Confidence 8865 778888999999999999876531 1111 2223 34444444444 3
Q ss_pred cccc-ccccccCCCCccEEECCCC-CCCCC-CCcchhcCC-CCcEEEccCcc
Q 041121 239 FSRS-ISLCSISGSKLTYIDLSSN-LLSGK-LPDCWWMFD-SLVILDLGNNS 286 (574)
Q Consensus 239 i~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~N~ 286 (574)
+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 3321 2222345677777777777 66532 345566667 77777777763
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=3.9e-20 Score=171.04 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=119.8
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++.+..+ |..+. +++++|++++|.+++..+..|..+++
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~--------------------------------- 57 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKK--------------------------------- 57 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTT---------------------------------
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCC---------------------------------
Confidence 6678888887754 33332 67889999998888666555554444
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
|+.|+|++|.+++..|..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|++..
T Consensus 58 -----------------L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 58 -----------------LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp -----------------CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----------------CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 578888888888777788888888888888888888777777788888888888888888877
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPL 541 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l 541 (574)
+..|..+++|+.|+|++|+|++..+.. ..+..++.+++++|||.|+|++
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888888888888888888544443 3467778888888888888875
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.8e-20 Score=187.39 Aligned_cols=111 Identities=32% Similarity=0.357 Sum_probs=76.1
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCc---cCCCCCCEEe
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSL---SPLSVLSVMD 506 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l---~~l~~L~~L~ 506 (574)
|++|+|++|.|+...+..|.++++|++|+|++|+|++..+..|.++++|+.|+|++|+|+...+..| ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 4677777777775556667777777777777777777777777777777777777777776555555 4577788888
Q ss_pred ccCCcCcccCCCc--chhcc--cCcccccCCCCCCCCCC
Q 041121 507 LSYNNLSGKIPTG--TQLQS--FNGSVYAGNPELCGLPL 541 (574)
Q Consensus 507 Ls~N~l~~~~p~~--~~~~~--l~~~~l~~Np~~c~~~l 541 (574)
|++|+|+ .+|.. ..++. +..+++++|||.|+|.+
T Consensus 170 L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 170 LSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCCCCC-ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 8888877 45532 12222 35677888888888764
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=167.19 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=84.3
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCC-ccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.++. +|..+ .+.+++|+|++|.+++..+ ..|..+++|+.+++++|.+..+
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------ 72 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------------------ 72 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------------------
Confidence 678888888875 34433 3457899999999886644 3466666665555444443311
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
.+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++.
T Consensus 73 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 73 --------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred --------CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 111223344455555555555544444455555555555555555554455555555555555555555544
Q ss_pred CCCCccCCCCCCEEeccCCcCcc
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
.|..|..+++|+.|++++|++++
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEEC
T ss_pred CHHHhcCCCCCCEEEecCcCCcC
Confidence 45555555555555555555543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=166.21 Aligned_cols=155 Identities=23% Similarity=0.227 Sum_probs=132.9
Q ss_pred ccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCC-cccccccCccccccccccccCccceeeeccccccccccc
Q 041121 253 LTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIP-DSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE 331 (574)
Q Consensus 253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~ 331 (574)
-+.+++++|.++. +|..+ .+.++.|++++|.+++..+ ..|..+++|
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L------------------------------ 59 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL------------------------------ 59 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC------------------------------
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC------------------------------
Confidence 3589999999984 56544 3467999999999997754 457888888
Q ss_pred cceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 332 ERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 332 ~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+++..+..|..+++|++|+|++|.+++..+..|.+
T Consensus 60 -~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 103 (220)
T 2v70_A 60 -RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG----------------------------------- 103 (220)
T ss_dssp -CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------------------------------
T ss_pred -CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------------------------------
Confidence 88999999999888888999999999999999998666655544
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.
T Consensus 104 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 104 ---------------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ---------------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ---------------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 44469999999999988899999999999999999999999899999999999999999999854
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.4e-19 Score=164.47 Aligned_cols=182 Identities=17% Similarity=0.180 Sum_probs=144.3
Q ss_pred CCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 208 NPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 208 L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
.+.++++++.++......++++++|++++|.++++.+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 9 ~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45677777777766655677899999999999888887788889999999999999877777788999999999999999
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..+..+++| +.+++++|.+.+..+..+..+++|++|++++|+++
T Consensus 89 ~~~~~~~~~~l~~L-------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 89 QSLPNGVFDKLTQL-------------------------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTC-------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCHhHhcCccCC-------------------------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 87777777888888 88999999998877777888999999999999988
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
+..+..|..+++ |+.|++++|.+.+
T Consensus 138 ~~~~~~~~~l~~--------------------------------------------------L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 138 SVPDGVFDRLTS--------------------------------------------------LQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCTTTTTTCTT--------------------------------------------------CCEEECCSCCBCC-----
T ss_pred eeCHHHhccCCC--------------------------------------------------ccEEEecCCCeec-----
Confidence 655555544444 5777788777653
Q ss_pred hhhcCCCCEEeCCCCcCcccCCccccCCCC
Q 041121 448 IMDLVGLVALNLSRNHLTGQNSPKIGQLKS 477 (574)
Q Consensus 448 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 477 (574)
.+++|++|+++.|++++.+|..++.++.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3456777778888888777777766654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.8e-19 Score=188.59 Aligned_cols=34 Identities=41% Similarity=0.575 Sum_probs=14.8
Q ss_pred CCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccc
Q 041121 251 SKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFS 288 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 288 (574)
++|++|++++|.|++ +|. +.. +|+.|++++|.++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC
Confidence 444444444444443 222 222 4444444444444
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.5e-19 Score=165.56 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=103.4
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.+..+..|..+++|++|+|++|++++..|..|.++++
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------------------------------- 81 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------------------------------- 81 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS---------------------------------
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC---------------------------------
Confidence 44555555555455556667778888888888887666666654444
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
|++|+|++|.|+...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..
T Consensus 82 -----------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 82 -----------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp -----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -----------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 588888888888666667788889999999999988888888888899999999999998888
Q ss_pred CCCccCCCCCCEEeccCCcCcc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSG 514 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~ 514 (574)
+..|..+++|+.|++++|++.+
T Consensus 145 ~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 145 KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCEEC
T ss_pred HHHHhCCCCCCEEEeCCCCcCC
Confidence 7888888999999999999874
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=163.22 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=98.1
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|++.+..+..|..+++|++|++++|++++..+..|..
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------ 98 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK------------------------------------ 98 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC------------------------------------
Confidence 44444444444444445667778888888888887554444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.+
T Consensus 99 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 99 --------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred --------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 3445888888888887767778888999999999999987777778889999999999997763
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
.++.|+.|+++.|+++|.+|..
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCT
T ss_pred -----CCCCHHHHHHHHHhCCceeecc
Confidence 4567889999999999999864
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.6e-18 Score=161.23 Aligned_cols=154 Identities=27% Similarity=0.303 Sum_probs=86.6
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++.+++.+..+ |..+ .++|++|+|++|.+++..+..|.++++|
T Consensus 22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------------------------- 66 (229)
T 3e6j_A 22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINL-------------------------------- 66 (229)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCC--------------------------------
Confidence 6788888887754 3333 3789999999999987777777766665
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
++|+|++|.++...+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++ .+
T Consensus 67 ------------------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 67 ------------------KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127 (229)
T ss_dssp ------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SC
T ss_pred ------------------cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-cc
Confidence 45555555554333344455555555555555555444444455555555555555555 33
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|..+..+++|+.|++++|+|++..+.. ..+..++.+++.+|||.|+|+
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 444455555555555555555222221 234444555555555555543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.3e-18 Score=166.43 Aligned_cols=147 Identities=23% Similarity=0.266 Sum_probs=74.6
Q ss_pred CCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCEE
Q 041121 10 RLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHL 87 (574)
Q Consensus 10 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 87 (574)
.+++|++|++++|.++.++ .+..+++|++|++++|+++++..+ .++|++|++++|.++. + ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 4455566666666555553 245555566666555555554222 2455555555555543 1 125555555555
Q ss_pred EccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccch
Q 041121 88 SLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINK 167 (574)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 167 (574)
++++|++++. + .+..+++ |+.|++++|++++. +.+..+++|++|++++|++++..+
T Consensus 118 ~L~~n~i~~~-~--------------------~l~~l~~-L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 118 SLEHNGISDI-N--------------------GLVHLPQ-LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp ECTTSCCCCC-G--------------------GGGGCTT-CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred ECCCCcCCCC-h--------------------hhcCCCC-CCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-
Confidence 5555555421 1 2334444 55555555555543 235555555555555555554333
Q ss_pred hhhccCCCCEEEccCCCCCc
Q 041121 168 SIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 168 ~~~~l~~L~~L~Ls~N~l~~ 187 (574)
+..+++|++|++++|.++.
T Consensus 174 -l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp -GTTCTTCCEEECCSSCCCB
T ss_pred -hcCCCccCEEECCCCcCCC
Confidence 5555555555555555543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=5.8e-18 Score=177.19 Aligned_cols=183 Identities=23% Similarity=0.310 Sum_probs=135.3
Q ss_pred CCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccc
Q 041121 228 NSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQ 307 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 307 (574)
+++.|+|++|.+++++... .++|++|++++|.|+ .+| ..+++|+.|++++|.+++ +|. +.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L------ 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SL------ 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TC------
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CC------
Confidence 5566666666666544322 267888888888888 455 456889999999999986 555 543 56
Q ss_pred cccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCC
Q 041121 308 QQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 387 (574)
Q Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~ 387 (574)
+.+++++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 123 -------------------------~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------- 158 (571)
T 3cvr_A 123 -------------------------KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------- 158 (571)
T ss_dssp -------------------------CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------
T ss_pred -------------------------CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------
Confidence 888889988887 443 57888999999888874 443 1
Q ss_pred CccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc
Q 041121 388 PTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ 467 (574)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 467 (574)
+++|+.|+|++|.+++ +|. |. ++|++|+|++|+|+ .
T Consensus 159 ---------------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 159 ---------------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred ---------------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 2346889999999985 555 55 88999999999998 4
Q ss_pred CCccccCCCCC-------CEEeCCCCcccccCCCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 468 NSPKIGQLKSL-------DFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 468 ~~~~~~~l~~L-------~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
+|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 454 544 67 99999999998 46676777999999999999998877765
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.8e-18 Score=169.69 Aligned_cols=179 Identities=26% Similarity=0.186 Sum_probs=132.8
Q ss_pred CeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccccc-CCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc
Q 041121 209 PGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSI-SGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF 287 (574)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 287 (574)
+.++++++.++..+...+..++.|+|++|.|+++.+..+. .+++|++|++++|.|++..+..|..+++|++|+|++|.+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 5677777777765545567788888888888888887776 788899999999988877777888888999999999888
Q ss_pred ccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCccc
Q 041121 288 SGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNIS 367 (574)
Q Consensus 288 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 367 (574)
++..+..|..+++| +.|+|++|.+....+..|..+++|++|+|++|+++
T Consensus 101 ~~~~~~~~~~l~~L-------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 101 HTLDEFLFSDLQAL-------------------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CEECTTTTTTCTTC-------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCHHHhCCCcCC-------------------------------CEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 87777777777777 77888888887777777777888888888888777
Q ss_pred ccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHh
Q 041121 368 GKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEE 447 (574)
Q Consensus 368 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 447 (574)
...+..|..+ ..+++|+.|+|++|.|+...+..
T Consensus 150 ~l~~~~~~~~-----------------------------------------------~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 150 RFPVELIKDG-----------------------------------------------NKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp SCCGGGTC---------------------------------------------------CTTCCEEECCSSCCCCCCHHH
T ss_pred eeCHHHhcCc-----------------------------------------------ccCCcCCEEECCCCCCCccCHHH
Confidence 4333333211 12455678888888887666667
Q ss_pred hhhcCC--CCEEeCCCCcCc
Q 041121 448 IMDLVG--LVALNLSRNHLT 465 (574)
Q Consensus 448 ~~~l~~--L~~L~Ls~N~l~ 465 (574)
|..++. ++.|+|++|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 777766 377788877765
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.4e-18 Score=163.29 Aligned_cols=169 Identities=23% Similarity=0.249 Sum_probs=108.6
Q ss_pred CCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccc
Q 041121 250 GSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFES 329 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 329 (574)
+++|++|++++|.++.. + .+..+++|+.|++++|.+++..+ +..+++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L---------------------------- 92 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNL---------------------------- 92 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTC----------------------------
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCC----------------------------
Confidence 45566666666665532 2 25556666666666666654332 4555555
Q ss_pred cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCcccccccc
Q 041121 330 WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQ 409 (574)
Q Consensus 330 ~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 409 (574)
+.+++++|.+.+. ..+..+++|++|++++|++++. ..+.
T Consensus 93 ---~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~---------------------------------- 131 (291)
T 1h6t_A 93 ---GWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV---------------------------------- 131 (291)
T ss_dssp ---CEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG----------------------------------
T ss_pred ---CEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc----------------------------------
Confidence 5555666655542 2366677777777777777642 1222
Q ss_pred CcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 410 DKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
.+++|+.|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 132 ----------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 132 ----------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ----------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 244467788888887744 567778888888888888875544 777788888888888887
Q ss_pred ccCCCCccCCCCCCEEeccCCcCc
Q 041121 490 GGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 490 ~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+. + .+..+++|+.|++++|+++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 54 3 3777788888888888876
No 110
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=154.91 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=111.7
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|++++|.++ .+|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|+++.+..|.++++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3689999999998 777899999999999999999998888899999999999999999998888899999999999999
Q ss_pred CCcCcccCCC-c-chhcccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCccccc
Q 041121 509 YNNLSGKIPT-G-TQLQSFNGSVYAGNPELCGLPLP---------------NKCRDEESAPGPGMTEGRDDADTSEDDM 570 (574)
Q Consensus 509 ~N~l~~~~p~-~-~~~~~l~~~~l~~Np~~c~~~l~---------------~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (574)
+|+|+ .+|. . ..+..++.+++++|||.|+|.+. ..|..+....+....+.+.+.-.+.+++
T Consensus 111 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~~~~ 188 (193)
T 2wfh_A 111 GNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAAAH 188 (193)
T ss_dssp SSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC----
T ss_pred CCCCC-eeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeehhhc
Confidence 99999 4554 3 45788899999999999999853 2466555555555555555554444433
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.5e-17 Score=154.71 Aligned_cols=134 Identities=25% Similarity=0.221 Sum_probs=102.7
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.+..+..|..+++|++|+|++|+++...+..|.+
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~------------------------------------ 86 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS------------------------------------ 86 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc------------------------------------
Confidence 44555555555555556667778888888888887544444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|+.|+|++|.|++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..
T Consensus 87 --------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 87 --------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred --------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 344588888888888776777888899999999999988 56777888899999999999999777
Q ss_pred CCCccCCCCCCEEeccCCcCcccCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p 517 (574)
+..|..+++|+.|++++|++.+..+
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7788889999999999999986655
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=9.8e-18 Score=151.37 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=115.4
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc-cccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+.. +|..+. .++++|++++|.+++..+. .|.
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~------------------------------------ 51 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFG------------------------------------ 51 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGG------------------------------------
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccc------------------------------------
Confidence 667888887764 443332 3788888888887754443 233
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
.+++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|.++++|++|++++|++++.
T Consensus 52 --------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 52 --------------RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp --------------GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred --------------cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 344568999999999888888899999999999999999988888888999999999999999988
Q ss_pred CCCCccCCCCCCEEeccCCcCcccCCCcchhcccCcccccCCCCCCCC
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLSGKIPTGTQLQSFNGSVYAGNPELCGL 539 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~ 539 (574)
.|..|..+++|+.|++++|++++..+.......+....+.++...|+-
T Consensus 118 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 118 MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence 888999999999999999999876654322233333345555555543
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1e-17 Score=177.34 Aligned_cols=170 Identities=22% Similarity=0.266 Sum_probs=92.4
Q ss_pred CCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccccc
Q 041121 227 SNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFT 306 (574)
Q Consensus 227 ~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~ 306 (574)
..|+.|++++|.+..+. .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. + .+..+++|
T Consensus 43 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L----- 111 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL----- 111 (605)
T ss_dssp TTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC-----
T ss_pred CCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC-----
Confidence 44444555555544433 23445566666666666654332 55566666666666665531 1 34444444
Q ss_pred ccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCC
Q 041121 307 QQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 386 (574)
Q Consensus 307 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~ 386 (574)
+.|+|++|.+... ..+..+++|+.|+|++|.+++. ..+.
T Consensus 112 --------------------------~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~----------- 150 (605)
T 1m9s_A 112 --------------------------KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS----------- 150 (605)
T ss_dssp --------------------------CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-----------
T ss_pred --------------------------CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc-----------
Confidence 5555555555542 2355556666666666665532 1222
Q ss_pred CCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcc
Q 041121 387 DPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTG 466 (574)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 466 (574)
.+++|+.|+|++|.+++..| +..+++|++|+|++|.|++
T Consensus 151 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 151 ---------------------------------------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ---------------------------------------SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ---------------------------------------ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 23445666666666664433 6666666666666666664
Q ss_pred cCCccccCCCCCCEEeCCCCccccc
Q 041121 467 QNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 467 ~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
. ..+..+++|+.|+|++|++...
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEECC
T ss_pred C--hHHccCCCCCEEEccCCcCcCC
Confidence 3 2456666666666666666643
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.5e-17 Score=150.14 Aligned_cols=139 Identities=22% Similarity=0.261 Sum_probs=118.6
Q ss_pred cccEEEccCCcCCCCCcH-hhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 429 LIKSLELSSNKLNGAVPE-EIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
++++|++++|.+++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|+.|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 369999999999866654 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCCc-chhcccCcccccCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCcc
Q 041121 508 SYNNLSGKIPTG-TQLQSFNGSVYAGNPELCGLPLP---------------NKCRDEESAPGPGMTEGRDDADTSE 567 (574)
Q Consensus 508 s~N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~l~---------------~~c~~~~~~~~~~~~~~~~~~~~~~ 567 (574)
++|+|++..|.. ..++.++.+++++|||.|+|++. ..|..+....+..+.+.+.++-.|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcC
Confidence 999999888876 46789999999999999999963 2577666665555555555554443
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.9e-17 Score=175.28 Aligned_cols=173 Identities=21% Similarity=0.198 Sum_probs=118.1
Q ss_pred hcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCC
Q 041121 8 SLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLE 85 (574)
Q Consensus 8 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 85 (574)
+..+++|+.|++++|.+..++ .|..+++|++|+|++|+++.+..+ .++|++|+|++|.++. ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 345677777778777777764 366777788888877777776332 3677777777777764 22 577777777
Q ss_pred EEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCccccccc
Q 041121 86 HLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
+|+|++|.+.+. + .+..+++ |+.|+|++|++++. +.+..+++|++|+|++|.+.+..
T Consensus 113 ~L~Ls~N~l~~l-~--------------------~l~~l~~-L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 113 SLSLEHNGISDI-N--------------------GLVHLPQ-LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp EEECTTSCCCCC-G--------------------GGGGCTT-CSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred EEEecCCCCCCC-c--------------------cccCCCc-cCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 777777777632 2 3455666 78888888877755 44777778888888888777555
Q ss_pred chhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC
Q 041121 166 NKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI 222 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~ 222 (574)
| +..+++|+.|+|++|.|+.++ . +..+++|+.|++++|.+.+..
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~---------~--l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR---------A--LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG---------G--GTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCCCh---------H--HccCCCCCEEEccCCcCcCCc
Confidence 5 777777888888877776432 1 355666666666666666543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.4e-18 Score=153.43 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=81.4
Q ss_pred cCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCc--CCcccEEEccCCcCCCCCCccccCCCCCCE
Q 041121 9 LRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNI--SSNFVSIDLSFNQLQGSIPDSSQHMVYLEH 86 (574)
Q Consensus 9 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 86 (574)
..+++|++|++++|.++.++. +..+++|++|++++|.++.+..+ .++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHH----HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 345566777777776665542 55666666666666665554222 255566666666555545555555666666
Q ss_pred EEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCc-ccccCCCCCCCCCCCEEEccCccccccc
Q 041121 87 LSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNH-FTGPIPDLGGFSSMKRLYLSDNLLNGTI 165 (574)
Q Consensus 87 L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~-l~~~~~~l~~l~~L~~L~L~~n~i~~~~ 165 (574)
|++++|++++..+. .+..+++ |++|++++|+ ++. .+.+..+++|++|++++|++++.
T Consensus 117 L~Ls~n~i~~~~~~-------------------~l~~l~~-L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 117 LDISHSAHDDSILT-------------------KINTLPK-VNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp EECCSSBCBGGGHH-------------------HHTTCSS-CCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCC-
T ss_pred EEecCCccCcHhHH-------------------HHhhCCC-CCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcCh-
Confidence 66666555543333 2333444 5566665555 332 22355555555555555555532
Q ss_pred chhhhccCCCCEEEccCCCC
Q 041121 166 NKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 166 ~~~~~~l~~L~~L~Ls~N~l 185 (574)
+ .+..+++|++|++++|+|
T Consensus 175 ~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp T-TGGGCSSCCEEEECBC--
T ss_pred H-HhccCCCCCEEEeeCccc
Confidence 1 455555555555555554
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.3e-17 Score=164.32 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=127.1
Q ss_pred CCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCccc----ccCCCcccccccCc
Q 041121 226 PSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSF----SGRIPDSMGFLQNI 301 (574)
Q Consensus 226 ~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L 301 (574)
+.+|++++|.+ .++.+...+|.++++|+++++.+|.+..+.+.+|.++.++..+....+.. .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 35555666666 66667777777777888888887777666677777777776666655322 22223344444444
Q ss_pred cccccccccccCccceeeeccccccccc---------cccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCc
Q 041121 302 QTQFTQQQFNRRTVFIVWELLTTQTFES---------WEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPK 372 (574)
Q Consensus 302 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 372 (574)
+.. +.+...+.++. .....+.+.++-...........+++|+.++|++|+++.+.+.
T Consensus 179 ~~~--------------i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 179 ETT--------------IQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp EEE--------------EEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred cee--------------EEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 210 01100000000 0002233322211100001111367778888887777755556
Q ss_pred cccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcC
Q 041121 373 CFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLV 452 (574)
Q Consensus 373 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 452 (574)
+|.++.+ |+.+++.+| ++.+.+.+|.++.
T Consensus 245 aF~~~~~--------------------------------------------------L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 245 TFAQKKY--------------------------------------------------LLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp TTTTCTT--------------------------------------------------CCEEECCTT-CCEECTTTTTTCT
T ss_pred hhhCCCC--------------------------------------------------CCEEECCcc-cceehHHHhhCCh
Confidence 6655554 467777776 6656667788888
Q ss_pred CCC-EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEe
Q 041121 453 GLV-ALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMD 506 (574)
Q Consensus 453 ~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 506 (574)
+|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 887 888877 67767777888888888888888888777777888888888775
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.1e-17 Score=146.48 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=92.5
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.+++++|.+.. ...+..+++|++|++++|.+++..+..+..
T Consensus 69 ~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------------------ 110 (197)
T 4ezg_A 69 KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG------------------------------------ 110 (197)
T ss_dssp SEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT------------------------------------
T ss_pred CEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcC------------------------------------
Confidence 555555554332 235667788888888888887655555543
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCCCCCCEEeCCCCccccc
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQLKSLDFLDLSRNQLVGG 491 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 491 (574)
+++|++|++++|.+++..+..+..+++|++|++++|+ ++. ++ .+..+++|++|++++|++++.
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh
Confidence 3446888999999887778888899999999999998 664 44 688889999999999998854
Q ss_pred CCCCccCCCCCCEEeccCCcCc
Q 041121 492 IPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 492 ~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
. .+..+++|+.|++++|+|.
T Consensus 175 ~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp T--TGGGCSSCCEEEECBC---
T ss_pred H--HhccCCCCCEEEeeCcccC
Confidence 3 6888899999999999886
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.6e-18 Score=166.09 Aligned_cols=263 Identities=11% Similarity=0.045 Sum_probs=155.7
Q ss_pred CCCCCEEEccCCcCc--cCchhhhhcccCCCCCcccccccccccc--------ccccCcEEEccCCcccccCCC-CCCCC
Q 041121 81 MVYLEHLSLMFNELE--GGIPKFFGNMLNLSDNKLAIIQNMSSGC--------LKNSLESLHLEVNHFTGPIPD-LGGFS 149 (574)
Q Consensus 81 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~n~l~~l~~~~~~~--------l~~~L~~L~L~~n~l~~~~~~-l~~l~ 149 (574)
+++|++|||++|++. ...+..+.. ..+.......||..+|.+ +++ |+.+++.. .++.+.+. |.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~-~~~~~~~~~~I~~~aF~~~~~~~~~g~~~-L~~l~L~~-~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPN-GKFYIYMANFVPAYAFSNVVNGVTKGKQT-LEKVILSE-KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGG-GCCEEECTTEECTTTTEEEETTEEEECTT-CCC-CBCT-TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccc-cccccccccccCHHHhcccccccccccCC-CcEEECCc-cccchhHHHhhcCc
Confidence 677888888877776 222222222 111111222567778888 898 99999999 88877776 99999
Q ss_pred CCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCC-eEeccCCc-ccCC---CCC
Q 041121 150 SMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNP-GIDISSNH-FEGP---IPP 224 (574)
Q Consensus 150 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~-~L~l~~n~-l~~~---~~~ 224 (574)
+|++|++.+|.+..+.+.+|.++.++..+.+..+.... -...+....+..+..++ .+.+.... +... ...
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~-----~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR-----FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH-----TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh-----ccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 99999999999987888899988888777766532100 00011111133344444 23332211 0000 000
Q ss_pred CCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCcccc
Q 041121 225 LPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQ 304 (574)
Q Consensus 225 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l 304 (574)
.+.++..+.+.++-...........+++|+++++++|.++.+.+.+|.++.+|+.+++.+| ++...+.+|.++.+|
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L--- 275 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL--- 275 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC---
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc---
Confidence 1233444444443211111111112567777777777776666666777777777777766 665666667777666
Q ss_pred ccccccccCccceeeeccccccccccccc-eEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccc
Q 041121 305 FTQQQFNRRTVFIVWELLTTQTFESWEER-FVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 383 (574)
Q Consensus 305 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 383 (574)
+ .+++.+ .+..+.+.+|.+|++|+.++++.|.++.+.+.+|.++++|+.+
T Consensus 276 ----------------------------~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 276 ----------------------------AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp ----------------------------CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ----------------------------cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 5 666666 5555666777777777777777777776666777777777665
Q ss_pred c
Q 041121 384 R 384 (574)
Q Consensus 384 ~ 384 (574)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 4
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=4.7e-17 Score=154.65 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=58.2
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|+.|++++|.+++ ++ .+..+++|++|+|++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 5777888887764 33 477778888888888887754 2 577778888888888888765 5677778888888888
Q ss_pred CcCc
Q 041121 510 NNLS 513 (574)
Q Consensus 510 N~l~ 513 (574)
|+++
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8877
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=9.1e-16 Score=154.42 Aligned_cols=85 Identities=7% Similarity=0.034 Sum_probs=63.1
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCC-CCCE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS-VLSV 504 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~ 504 (574)
++++|+.+++.+ .++.+...+|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCE
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccE
Confidence 344456777763 466566678888888888888554 666777888888 888888888888877777788774 6788
Q ss_pred EeccCCcCc
Q 041121 505 MDLSYNNLS 513 (574)
Q Consensus 505 L~Ls~N~l~ 513 (574)
|++..+.+.
T Consensus 375 l~vp~~~~~ 383 (401)
T 4fdw_A 375 IRVPAESVE 383 (401)
T ss_dssp EEECGGGHH
T ss_pred EEeCHHHHH
Confidence 888777655
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=151.02 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=133.7
Q ss_pred CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCC
Q 041121 107 NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 107 ~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (574)
+++.+.++.++ .+..+++ |++|++++|+++.. +.+..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 25 ~l~~~~i~~~~--~~~~l~~-L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 25 NLGKQSVTDLV--SQKELSG-VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTCSCTTSEE--CHHHHTT-CSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred HhcCCCccccc--chhhcCc-CcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence 34455555544 4677888 99999999999864 468899999999999999986655 999999999999999998
Q ss_pred cccCccccccCCchhhcCCCCCCeEeccCCcccCCCC-CCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCC
Q 041121 187 DLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIP-PLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSG 265 (574)
Q Consensus 187 ~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 265 (574)
.++. . .. ++|+.|++++|++++... ..+++|+.|++++|+++++. .+..+++|++|++++|.+++
T Consensus 99 ~l~~---------~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 99 NLNG---------I--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCTT---------C--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CcCc---------c--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 6543 1 22 789999999999987532 22789999999999999875 56788999999999999986
Q ss_pred CCCcchhcCCCCcEEEccCcccccC
Q 041121 266 KLPDCWWMFDSLVILDLGNNSFSGR 290 (574)
Q Consensus 266 ~~~~~~~~l~~L~~L~L~~N~l~~~ 290 (574)
. ..+..+++|+.|++++|.+.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 6788999999999999999855
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=3.4e-15 Score=150.20 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 443 AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 443 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
+.+.+|.+|++|+.+.|. +.++.+...+|.++++|+.+++..| ++.+...+|.++ +|+.+++++|.+.
T Consensus 291 I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 344566666666666666 3455556666666666666666444 555556666666 6666666666655
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=8.6e-19 Score=184.50 Aligned_cols=213 Identities=17% Similarity=0.130 Sum_probs=129.5
Q ss_pred CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCC-Cccc----CccccccCCchhhcCCCCCCeEe-ccCCcc
Q 041121 145 LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSL-TDLA----NIQIKGKLPDLSSRFGTSNPGID-ISSNHF 218 (574)
Q Consensus 145 l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~----~~~~~~~lp~~~~~~~~~L~~L~-l~~n~l 218 (574)
+...++|+.|+|++|+++ .+|..++.+++|+.|++++|.. ..++ .....+..|.. +..+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhccc
Confidence 356788888888888887 6788888888888888866531 0000 00011222222 44455555555 444433
Q ss_pred cCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccc
Q 041121 219 EGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFL 298 (574)
Q Consensus 219 ~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 298 (574)
. .|..+.+.+|.+..+.+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|
T Consensus 423 ~--------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp------ 479 (567)
T 1dce_A 423 D--------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP------ 479 (567)
T ss_dssp H--------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC------
T ss_pred c--------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc------
Confidence 2 34445556666655443 247777777777774 454 777777777777777766 334
Q ss_pred cCccccccccccccCccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccc
Q 041121 299 QNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFT 378 (574)
Q Consensus 299 ~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 378 (574)
..+..+++|+.|+|++|.+++ +| .+..
T Consensus 480 -------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~-- 506 (567)
T 1dce_A 480 -------------------------------------------------PALAALRCLEVLQASDNALEN-VD-GVAN-- 506 (567)
T ss_dssp -------------------------------------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTT--
T ss_pred -------------------------------------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCC--
Confidence 344555666777777777664 33 3332
Q ss_pred cCccccCCCCccccccccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCC-cHhhhhcCCCCEE
Q 041121 379 AMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAV-PEEIMDLVGLVAL 457 (574)
Q Consensus 379 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 457 (574)
+++|+.|+|++|.|++.. |..|..+++|++|
T Consensus 507 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 507 ------------------------------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp ------------------------------------------------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ------------------------------------------------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 333577777777777554 7777777777777
Q ss_pred eCCCCcCcccCCc---cccCCCCCCEEeC
Q 041121 458 NLSRNHLTGQNSP---KIGQLKSLDFLDL 483 (574)
Q Consensus 458 ~Ls~N~l~~~~~~---~~~~l~~L~~L~L 483 (574)
+|++|.+++.++. .+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777777755442 2334677777754
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.3e-18 Score=181.20 Aligned_cols=192 Identities=21% Similarity=0.175 Sum_probs=129.0
Q ss_pred cCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcc-------------cccCCCcccccccCccccc-cccccccC
Q 041121 248 ISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNS-------------FSGRIPDSMGFLQNIQTQF-TQQQFNRR 313 (574)
Q Consensus 248 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~l~-~~~~~~~~ 313 (574)
...+.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.++ .... ..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n--~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA--YL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH--HH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc--cc
Confidence 35677778888888776 567777778888888877664 3334444555555554332 1100 00
Q ss_pred ccceeeeccccccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccc
Q 041121 314 TVFIVWELLTTQTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVY 393 (574)
Q Consensus 314 ~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~ 393 (574)
..+ ..+.+.+|.+....+ ..|+.|+|++|.+++ +|. +..
T Consensus 423 ~~L----------------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~----------------- 461 (567)
T 1dce_A 423 DDL----------------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ----------------- 461 (567)
T ss_dssp HHH----------------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-----------------
T ss_pred chh----------------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-----------------
Confidence 000 233344444443211 247888888888874 443 443
Q ss_pred cccccCCCccccccccCcccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCcccc
Q 041121 394 YYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIG 473 (574)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 473 (574)
+++|+.|+|++|.|+ .+|..|..+++|++|+|++|+|++ +| .|.
T Consensus 462 ---------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~ 505 (567)
T 1dce_A 462 ---------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVA 505 (567)
T ss_dssp ---------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGT
T ss_pred ---------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccC
Confidence 344588888888888 777888888888888888888886 45 788
Q ss_pred CCCCCCEEeCCCCcccccC-CCCccCCCCCCEEeccCCcCcccCCCc
Q 041121 474 QLKSLDFLDLSRNQLVGGI-PSSLSPLSVLSVMDLSYNNLSGKIPTG 519 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~ 519 (574)
++++|++|+|++|+|++.. |..+..+++|+.|+|++|++++..|..
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8888888888888888776 888888888888888888888655543
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=139.14 Aligned_cols=130 Identities=24% Similarity=0.262 Sum_probs=110.3
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++.+..+ |..+ .+++++|++++|.++ .+|..|.+
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 6788888888753 4333 257888999988887 55555544
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|+.|+|++|.|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|+...
T Consensus 53 --------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 53 --------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred --------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 444699999999999888889999999999999999999999999999999999999999999888
Q ss_pred CCCccCCCCCCEEeccCCcCcccC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKI 516 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~ 516 (574)
+..|..+++|+.|++++|++.+..
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSG
T ss_pred hhhhhcCccccEEEeCCCCeecCC
Confidence 888999999999999999998543
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.5e-15 Score=135.21 Aligned_cols=111 Identities=27% Similarity=0.277 Sum_probs=67.6
Q ss_pred ccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 430 IKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 46666666666655555556666666666666666655555566666666666666666655555566666666666666
Q ss_pred CcCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|++++..+.. ..++.++.+++++||+.|+|+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666322222 235566666666666666655
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.2e-16 Score=173.56 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=24.8
Q ss_pred cccCCCCccEEECCCCCCCCCCCcchhcCCCCcEEEccCcccccCCCcccccccCc
Q 041121 246 CSISGSKLTYIDLSSNLLSGKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNI 301 (574)
Q Consensus 246 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 301 (574)
.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 3344455555555555554 33333334555555555555554 444444444444
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.5e-15 Score=133.87 Aligned_cols=93 Identities=28% Similarity=0.294 Sum_probs=80.6
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCC---CCccCCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIP---SSLSPLS 500 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~l~~l~ 500 (574)
..+++|++|++++|.+++.+|..+..+++|++|+|++|++++... ..+..+++|++|++++|++++..+ ..+..++
T Consensus 68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 346668999999999997788888889999999999999986532 788999999999999999996655 4789999
Q ss_pred CCCEEeccCCcCcccCCC
Q 041121 501 VLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 501 ~L~~L~Ls~N~l~~~~p~ 518 (574)
+|+.|++++|.+. .+|.
T Consensus 148 ~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 148 QLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp SCCEETTEETTSC-BCCS
T ss_pred cCcEecCCCCChh-hccc
Confidence 9999999999998 6665
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=7.6e-17 Score=175.07 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCCCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccC
Q 041121 12 HSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCYLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMF 91 (574)
Q Consensus 12 ~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 91 (574)
+.++.|+|.+|.+...+. ..|+.++|+.+.|. .++++.|.+. ..+..+..+++|++|+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~--------~~l~~l~Ls~~~i~----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ--------ALLQHKKLSQYSID----------EDDDIENRMV-MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccceEEeeCCCCCcchh--------hHhhcCccCccccc----------Ccccccccee-cChhhhccCCCCcEEECCC
Confidence 446666666666655532 12334444444433 2344445444 5566677777777777777
Q ss_pred CcCccCchhhhhccc-----CCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEEccCcccccccc
Q 041121 92 NELEGGIPKFFGNML-----NLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLYLSDNLLNGTIN 166 (574)
Q Consensus 92 n~l~~~~~~~~~~l~-----~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~ 166 (574)
|.+. .+|..+..+. +|++|.++.+|. .+..+++ |++|+|++|+++.++..|.++++|++|+|++|.|+ .+|
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~-L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSN-LRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTT-CCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCC-CCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 7776 4444332221 233333333333 4444554 55555555555533222555555555555555554 334
Q ss_pred hhhhccCCCCEEEccCCCCC
Q 041121 167 KSIGQIFKLEITCLSQNSLT 186 (574)
Q Consensus 167 ~~~~~l~~L~~L~Ls~N~l~ 186 (574)
..|..+++|++|+|++|.|+
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCC
T ss_pred hhhhcCCCccEEeCCCCccC
Confidence 44555555555555555544
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.1e-14 Score=143.84 Aligned_cols=310 Identities=10% Similarity=0.030 Sum_probs=184.7
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCcccCc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTDLANI 191 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 191 (574)
++.|+..+|.++.+ |+.+.+.. .++.+... |.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...
T Consensus 59 VtsIg~~AF~~c~~-L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRK-VTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTT-EEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCC-ceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 45577778888888 88888864 36655555 888888888888654 65566678888888887766543 4444333
Q ss_pred cccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCCCcch
Q 041121 192 QIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKLPDCW 271 (574)
Q Consensus 192 ~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 271 (574)
.|.+ +.... ..+ ...+..+...+|..+.+|+.+.+.++... ....+|
T Consensus 135 aF~~---------~~~~~-~~~----------------------~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F 181 (394)
T 4fs7_A 135 AFKG---------CDFKE-ITI----------------------PEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLF 181 (394)
T ss_dssp TTTT---------CCCSE-EEC----------------------CTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTT
T ss_pred eeec---------ccccc-ccc----------------------CccccccchhhhcccCCCcEEecCCccce-eccccc
Confidence 3322 11111 110 11112223344555555555555443222 344455
Q ss_pred hcCCCCcEEEccCcccccCCCcccccccCcccccccc-------ccccCccceeeeccccccccccccceEEecCceecc
Q 041121 272 WMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQ-------QFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHG 344 (574)
Q Consensus 272 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~ 344 (574)
.++.+|+.+++..+ ++......|..+..|+.+.... .......+ +.+.+... +..
T Consensus 182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l----------------~~i~ip~~-~~~ 243 (394)
T 4fs7_A 182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV----------------KNIIIPDS-FTE 243 (394)
T ss_dssp TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC----------------CEEEECTT-CCE
T ss_pred cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCC----------------ceEEECCC-cee
Confidence 55555555555444 3323334444444443222110 00000111 33444322 222
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+...++..+..++.+.+..+... +...+|..+..++........ .....|
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~-----------------------------i~~~~F 293 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI-----------------------------VPEKTF 293 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE-----------------------------ECTTTT
T ss_pred cccccccccccceeEEcCCCcce-eeccccccccccceeccCcee-----------------------------eccccc
Confidence 34446666777777777666443 455566666665544322211 122345
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCE
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSV 504 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~ 504 (574)
..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 67788899999765 66566788999999999999754 77677889999999999999877 77788889999999999
Q ss_pred EeccCC
Q 041121 505 MDLSYN 510 (574)
Q Consensus 505 L~Ls~N 510 (574)
+++..+
T Consensus 371 i~lp~~ 376 (394)
T 4fs7_A 371 VELPKR 376 (394)
T ss_dssp EEEEGG
T ss_pred EEECCC
Confidence 988654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=5.5e-15 Score=131.50 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=111.1
Q ss_pred ceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcc
Q 041121 333 RFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKV 412 (574)
Q Consensus 333 ~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (574)
+.++++++++.... ..+ .++|++|++++|++++..+..|..
T Consensus 10 ~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~------------------------------------ 50 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDK------------------------------------ 50 (177)
T ss_dssp TEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTT------------------------------------
T ss_pred CEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcC------------------------------------
Confidence 67888888887543 222 368899999999888555444443
Q ss_pred cccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 041121 413 MPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGI 492 (574)
Q Consensus 413 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 492 (574)
+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus 51 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 51 --------------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp --------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 444699999999999777778899999999999999999888888999999999999999999887
Q ss_pred CCCccCCCCCCEEeccCCcCcccCCC
Q 041121 493 PSSLSPLSVLSVMDLSYNNLSGKIPT 518 (574)
Q Consensus 493 ~~~l~~l~~L~~L~Ls~N~l~~~~p~ 518 (574)
+..|..+++|+.|++++|++.+..|.
T Consensus 117 ~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 117 DGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhcCCcccCEEEecCCCeeccCcc
Confidence 77889999999999999999976663
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=4.2e-14 Score=142.90 Aligned_cols=323 Identities=12% Similarity=0.039 Sum_probs=170.1
Q ss_pred hcCCCCCCcEEEccCCCCCCC----CCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCC
Q 041121 33 VIGKLHSLKTLTSHSCYLRPL----SNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNL 108 (574)
Q Consensus 33 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 108 (574)
+|.+|.+|+.+.+..+ ++.+ +.-+.+|+.+++..+ ++.+...+|..+.+|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~---------------- 127 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM---------------- 127 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT----------------
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc----------------
Confidence 6777777777766532 3322 111234444444332 33344455666666655444322
Q ss_pred CCCccccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcccccccchhhhccCCCCEEEccCCCCCc
Q 041121 109 SDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNLLNGTINKSIGQIFKLEITCLSQNSLTD 187 (574)
Q Consensus 109 ~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (574)
+..++..+|.++.. ++.. +.. ....+... |.++++|+.+.+.++. ..+...+|.++.+|+.+.+..+ ++.
T Consensus 128 ----l~~i~~~aF~~~~~-~~~~-~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~ 198 (394)
T 4fs7_A 128 ----LKSIGVEAFKGCDF-KEIT-IPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI 198 (394)
T ss_dssp ----CCEECTTTTTTCCC-SEEE-CCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE
T ss_pred ----eeeecceeeecccc-cccc-cCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE
Confidence 22233335555543 2222 221 12222333 7788888888886543 3356677888888888777664 443
Q ss_pred ccCccccccCCchhhcCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCCC
Q 041121 188 LANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGKL 267 (574)
Q Consensus 188 l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 267 (574)
+.... +..+..|+.+.+..+... +... +.....|+.+.+... ++...
T Consensus 199 I~~~~---------F~~~~~L~~i~~~~~~~~----------------------i~~~-~~~~~~l~~i~ip~~-~~~i~ 245 (394)
T 4fs7_A 199 IRDYC---------FAECILLENMEFPNSLYY----------------------LGDF-ALSKTGVKNIIIPDS-FTELG 245 (394)
T ss_dssp ECTTT---------TTTCTTCCBCCCCTTCCE----------------------ECTT-TTTTCCCCEEEECTT-CCEEC
T ss_pred eCchh---------hccccccceeecCCCceE----------------------eehh-hcccCCCceEEECCC-ceecc
Confidence 33322 344555555444332211 1111 112344555555432 22233
Q ss_pred CcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccccceEEecCceeccCCC
Q 041121 268 PDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWEERFVRLKSNKFHGKTP 347 (574)
Q Consensus 268 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~L~~n~~~~~~~ 347 (574)
..+|.++..++.+.+..+... .....|..+..+ +.+......+ ..
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l-------------------------------~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL-------------------------------KKVIYGSVIV---PE 290 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC-------------------------------CEEEECSSEE---CT
T ss_pred cccccccccceeEEcCCCcce-eecccccccccc-------------------------------ceeccCceee---cc
Confidence 445556666666666554332 334444444444 3333333322 22
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccccc
Q 041121 348 FQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRSTL 427 (574)
Q Consensus 348 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 427 (574)
.+|..+.+|+.+.+..+ ++.+...+|.++.+|
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L----------------------------------------------- 322 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL----------------------------------------------- 322 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC-----------------------------------------------
T ss_pred ccccccccccccccccc-cceechhhhcCCCCC-----------------------------------------------
Confidence 35666777777777644 443444556555554
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
+.+++..+ ++.+...+|.++.+|+.+++..+ ++.+...+|.++++|+.+++..+ +. ....+|.++++|+.+
T Consensus 323 ---~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 323 ---VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ---CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ---CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 55666433 55455677888888888888766 66667778888888888888755 33 223567777777654
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7e-15 Score=129.60 Aligned_cols=61 Identities=28% Similarity=0.297 Sum_probs=38.6
Q ss_pred ccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccc
Q 041121 430 IKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 430 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~i~~ 490 (574)
|+.|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 4666666666663221 556666777777777777765544 466667777777777776663
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=5.5e-15 Score=127.42 Aligned_cols=125 Identities=22% Similarity=0.225 Sum_probs=96.3
Q ss_pred ceEEecCceec-cCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCc
Q 041121 333 RFVRLKSNKFH-GKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDK 411 (574)
Q Consensus 333 ~~l~L~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (574)
+.+++++|.+. +.++..+..+++|++|++++|.+++. ..+
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------------------------- 60 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL------------------------------------- 60 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-------------------------------------
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-------------------------------------
Confidence 66777777776 55666666777777777777776643 222
Q ss_pred ccccccCCCcccccccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCccc-CCccccCCCCCCEEeCCCCcccc
Q 041121 412 VMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQ-NSPKIGQLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 412 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~ 490 (574)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++
T Consensus 61 -------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 61 -------------PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp -------------CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred -------------hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 2355578999999999876888888899999999999999864 34778889999999999999987
Q ss_pred cCC---CCccCCCCCCEEeccC
Q 041121 491 GIP---SSLSPLSVLSVMDLSY 509 (574)
Q Consensus 491 ~~~---~~l~~l~~L~~L~Ls~ 509 (574)
..+ ..+..+++|+.|++++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 655 5788889999998864
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.1e-14 Score=128.28 Aligned_cols=107 Identities=25% Similarity=0.277 Sum_probs=75.7
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCC
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N 510 (574)
+.+++++|.++ .+|..+ .++|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 67777777776 455444 267777777777777777777777777777777777777666667777777777777777
Q ss_pred cCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 511 NLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 511 ~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+|++..|.. ..+..++.+++++|||.|+|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777433332 356677777777777777775
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.5e-14 Score=124.69 Aligned_cols=129 Identities=26% Similarity=0.247 Sum_probs=82.4
Q ss_pred CCCccEEECCCCCCC-CCCCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccccccc
Q 041121 250 GSKLTYIDLSSNLLS-GKLPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFE 328 (574)
Q Consensus 250 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~ 328 (574)
.+++++|++++|.++ +..|..+..+++|+.|++++|.+++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------------- 57 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-------------------------------------- 57 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------------------------------------
Confidence 356777777777776 55666667777777777777766533
Q ss_pred ccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccc
Q 041121 329 SWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSF 408 (574)
Q Consensus 329 ~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (574)
..+..+++|++|++++|.+++.+|..+..
T Consensus 58 -------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------------------------------- 86 (149)
T 2je0_A 58 -------------------ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------------------------------- 86 (149)
T ss_dssp -------------------TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------------------------------
T ss_pred -------------------hhhhcCCCCCEEECCCCcccchHHHHhhh--------------------------------
Confidence 23445566777777777766444433322
Q ss_pred cCcccccccCCCcccccccCcccEEEccCCcCCCC-CcHhhhhcCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCC
Q 041121 409 QDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGA-VPEEIMDLVGLVALNLSRNHLTGQNS---PKIGQLKSLDFLDLS 484 (574)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~ 484 (574)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 87 ------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 ------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33346777777777642 23566777777777777777776555 466777777777765
Q ss_pred C
Q 041121 485 R 485 (574)
Q Consensus 485 ~ 485 (574)
+
T Consensus 149 d 149 (149)
T 2je0_A 149 D 149 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.5e-14 Score=125.53 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=72.5
Q ss_pred cEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCC
Q 041121 431 KSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 431 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N 510 (574)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5555443 66777777777777666777777777777777777777666666677777777777777
Q ss_pred cCcccCCCc-chhcccCcccccCCCCCCCCC
Q 041121 511 NLSGKIPTG-TQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 511 ~l~~~~p~~-~~~~~l~~~~l~~Np~~c~~~ 540 (574)
+|++..+.. ..++.++.+++++|||.|+|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 777333322 346667777777777777765
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.2e-14 Score=127.45 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=87.5
Q ss_pred cCCCCCCcEEEccCCCCCCCCCc---CCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCC
Q 041121 34 IGKLHSLKTLTSHSCYLRPLSNI---SSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSD 110 (574)
Q Consensus 34 ~~~l~~L~~L~l~~n~l~~~~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (574)
+..+.+|++|++++|+++.+..+ .++|++|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~---------- 82 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEG---------- 82 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSC----------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcc----------
Confidence 44455555555555555544222 13566666666666643 5677888888888888887743222
Q ss_pred CccccccccccccccccCcEEEccCCcccccCC--CCCCCCCCCEEEccCcccccccch----hhhccCCCCEEEccCCC
Q 041121 111 NKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIP--DLGGFSSMKRLYLSDNLLNGTINK----SIGQIFKLEITCLSQNS 184 (574)
Q Consensus 111 n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~ 184 (574)
.|..+++ |++|++++|++..... .+..+++|++|++++|.+.. .|. .+..+++|++|++++|.
T Consensus 83 ---------~~~~l~~-L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 ---------LDQALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ---------HHHHCTT-CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred ---------hhhcCCC-CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 3456676 8888888888876554 37778888888888888873 344 47788888888888887
Q ss_pred CCc
Q 041121 185 LTD 187 (574)
Q Consensus 185 l~~ 187 (574)
+.+
T Consensus 152 ~~~ 154 (176)
T 1a9n_A 152 LKE 154 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.6e-14 Score=122.95 Aligned_cols=91 Identities=24% Similarity=0.191 Sum_probs=83.6
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|+.|+|++|.|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..++.|..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 36899999999998889999999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcccCCCc
Q 041121 509 YNNLSGKIPTG 519 (574)
Q Consensus 509 ~N~l~~~~p~~ 519 (574)
+|++++..+..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 99999555433
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=7.7e-14 Score=123.84 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=70.0
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCc--cccCCCCCCEEeCCCCcccccCCC----CccCC
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSP--KIGQLKSLDFLDLSRNQLVGGIPS----SLSPL 499 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~----~l~~l 499 (574)
.+++|+.|++++|.+++..+..|..+++|++|+|++|+++. +|. .+..+++|+.|++++|++.. .|. .+..+
T Consensus 62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l 139 (176)
T 1a9n_A 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV 139 (176)
T ss_dssp CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC
T ss_pred cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC
Confidence 45567899999999986655667889999999999999974 444 78889999999999999984 455 38888
Q ss_pred CCCCEEeccCCcCc
Q 041121 500 SVLSVMDLSYNNLS 513 (574)
Q Consensus 500 ~~L~~L~Ls~N~l~ 513 (574)
++|+.||+++|.+.
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 99999999999876
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.5e-15 Score=137.88 Aligned_cols=82 Identities=26% Similarity=0.308 Sum_probs=58.5
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccccCCCC----------c
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNS-PKIGQLKSLDFLDLSRNQLVGGIPSS----------L 496 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------l 496 (574)
++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 445778888888874 44 57778888888888888875432 46777888888888888887665543 6
Q ss_pred cCCCCCCEEeccCCcCc
Q 041121 497 SPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 497 ~~l~~L~~L~Ls~N~l~ 513 (574)
..+++|+.|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7777888776 66665
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3e-13 Score=119.53 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=80.5
Q ss_pred cccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEecc
Q 041121 429 LIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLS 508 (574)
Q Consensus 429 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 508 (574)
+|++|+|++|.|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++..+..|..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 36899999999998888999999999999999999998888888999999999999999998777789999999999999
Q ss_pred CCcCcccC
Q 041121 509 YNNLSGKI 516 (574)
Q Consensus 509 ~N~l~~~~ 516 (574)
+|++.+..
T Consensus 114 ~N~~~c~~ 121 (174)
T 2r9u_A 114 NNPWDCEC 121 (174)
T ss_dssp SSCBCTTB
T ss_pred CCCccccc
Confidence 99998433
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.1e-11 Score=125.11 Aligned_cols=333 Identities=11% Similarity=0.068 Sum_probs=162.1
Q ss_pred cccccccccccccccCcEEEccCCcccccCCC-CCCCCCCCEEEccCcc---cccccchhhhccCCCCEEEccCCCCCcc
Q 041121 113 LAIIQNMSSGCLKNSLESLHLEVNHFTGPIPD-LGGFSSMKRLYLSDNL---LNGTINKSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 113 l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
++.|++.+|.++...|+.+.+..+ ++.+... |.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 344666677766433777777643 5545555 7777888888777653 55555667777777776666543 3333
Q ss_pred cCccccccCCchhhcCCCCCCeEeccCCccc--CCCCCCCCCCcEEEcCCCcccccccccccCCCCccEEECCCCCCCCC
Q 041121 189 ANIQIKGKLPDLSSRFGTSNPGIDISSNHFE--GPIPPLPSNSSFLNLSKNRFSRSISLCSISGSKLTYIDLSSNLLSGK 266 (574)
Q Consensus 189 ~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~L~~n~l~~~ 266 (574)
+. ..+..+.+|+.+.+..+--. .........|+.+.+..+ +..+...+|.. ..|+.+.+..+-.. .
T Consensus 129 ~~---------~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i 196 (394)
T 4gt6_A 129 DS---------EAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-I 196 (394)
T ss_dssp CT---------TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-E
T ss_pred hh---------hhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-c
Confidence 22 22455566666666432111 111111445556665543 44455555533 45666666544322 4
Q ss_pred CCcchhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeeccccccccccc-cceEEecCceeccC
Q 041121 267 LPDCWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTTQTFESWE-ERFVRLKSNKFHGK 345 (574)
Q Consensus 267 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~L~~n~~~~~ 345 (574)
...+|.++..++......+.........+....... ..... .+... ...+.+. +.+..+
T Consensus 197 ~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~ip-~~v~~i 256 (394)
T 4gt6_A 197 GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD-------------YALIR------YPSQREDPAFKIP-NGVARI 256 (394)
T ss_dssp CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC-------------EEEEE------CCTTCCCSEEECC-TTEEEE
T ss_pred ccchhhhccccceecccccccccccceeeccccccc-------------ccccc------cccccccceEEcC-CcceEc
Confidence 455666666666666554443311111111000000 00000 00000 0222222 223334
Q ss_pred CChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccc
Q 041121 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS 425 (574)
Q Consensus 346 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (574)
...+|..+..|+.+.+..+... +...+|.++..|+.+.+...- .......|.
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i---------------------------~~I~~~aF~ 308 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRI---------------------------TELPESVFA 308 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC---------------------------CEECTTTTT
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCCcc---------------------------cccCceeec
Confidence 4556777777888777655443 555666666666554432110 011222344
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
++.+|+.+++..+ ++.+...+|.+|.+|+.+.|..+ ++.+...+|.++++|+.+++.++.... ..+.....|+.+
T Consensus 309 ~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i 383 (394)
T 4gt6_A 309 GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNL 383 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---
T ss_pred CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEE
Confidence 5555666666543 44344556666666666666543 444555566666666666666654432 234555556666
Q ss_pred eccCCcC
Q 041121 506 DLSYNNL 512 (574)
Q Consensus 506 ~Ls~N~l 512 (574)
.+..|.+
T Consensus 384 ~i~~~~~ 390 (394)
T 4gt6_A 384 PVAPGSI 390 (394)
T ss_dssp -------
T ss_pred EeCCCCE
Confidence 5555443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=3.5e-13 Score=133.82 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=71.7
Q ss_pred EEEccCC-cCCCCCcHhhhhcCCCCEEeCCC-CcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccC
Q 041121 432 SLELSSN-KLNGAVPEEIMDLVGLVALNLSR-NHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSY 509 (574)
Q Consensus 432 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 509 (574)
.++++++ +++ .+|. +..+++|++|+|++ |.|+++.+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4555 66777777777775 777766666777777777777777777777777777777777777777
Q ss_pred CcCcccCCCcchhcccCcccccCCCCCCCCC
Q 041121 510 NNLSGKIPTGTQLQSFNGSVYAGNPELCGLP 540 (574)
Q Consensus 510 N~l~~~~p~~~~~~~l~~~~l~~Np~~c~~~ 540 (574)
|+|++..|..+....++.+++.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 7777333333333336667777777777775
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.3e-14 Score=131.52 Aligned_cols=152 Identities=22% Similarity=0.215 Sum_probs=107.0
Q ss_pred CCccEEECCCCCCCCCCCc------chhcCCCCcEEEccCcccccCCCcccccccCccccccccccccCccceeeecccc
Q 041121 251 SKLTYIDLSSNLLSGKLPD------CWWMFDSLVILDLGNNSFSGRIPDSMGFLQNIQTQFTQQQFNRRTVFIVWELLTT 324 (574)
Q Consensus 251 ~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~~~~~~~~~l~~l~~~~~ 324 (574)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L----------------------- 72 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL----------------------- 72 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-----------------------
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-----------------------
Confidence 3444444444444444443 77788888888888888875 45 66777777
Q ss_pred ccccccccceEEecCceeccCCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccc
Q 041121 325 QTFESWEERFVRLKSNKFHGKTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVH 404 (574)
Q Consensus 325 ~~~~~~~~~~l~L~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~ 404 (574)
+.+++++|.+. .+|..+..+++|++|++++|++++ +| .+..
T Consensus 73 --------~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~---------------------------- 113 (198)
T 1ds9_A 73 --------RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK---------------------------- 113 (198)
T ss_dssp --------CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH----------------------------
T ss_pred --------CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc----------------------------
Confidence 77888888877 455566667788888888888874 22 2333
Q ss_pred cccccCcccccccCCCcccccccCcccEEEccCCcCCCCCc-HhhhhcCCCCEEeCCCCcCcccCCc----------ccc
Q 041121 405 HYSFQDKVMPTWKGSGREYRSTLGLIKSLELSSNKLNGAVP-EEIMDLVGLVALNLSRNHLTGQNSP----------KIG 473 (574)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~ 473 (574)
+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+.
T Consensus 114 ----------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 114 ----------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp ----------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred ----------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 4446889999999874332 4788899999999999998765443 377
Q ss_pred CCCCCCEEeCCCCcccc
Q 041121 474 QLKSLDFLDLSRNQLVG 490 (574)
Q Consensus 474 ~l~~L~~L~L~~N~i~~ 490 (574)
.+++|+.|| +|.++.
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 889999987 677763
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=9.6e-11 Score=118.18 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=34.6
Q ss_pred cCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 041121 427 LGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLV 489 (574)
Q Consensus 427 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 489 (574)
+.+|+.+.+..+ ++.+...+|.+|.+|+.+++.++.... ..+....+|+.+.+..|.+.
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 344577777544 665667789999999999998886542 46677788888888777554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3.2e-13 Score=134.47 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=95.6
Q ss_pred CCCCcEEECCCCCCCCC--CchhhhcCC-CCCCcEEEccCCCCCCC-----CCcCCcccEEEccCCcCCCCCCccc----
Q 041121 11 LHSLRYLNLEENNLANC--SDWFQVIGK-LHSLKTLTSHSCYLRPL-----SNISSNFVSIDLSFNQLQGSIPDSS---- 78 (574)
Q Consensus 11 l~~L~~L~Ls~n~i~~~--~~~~~~~~~-l~~L~~L~l~~n~l~~~-----~~~~~~L~~L~Ls~n~i~~~~~~~~---- 78 (574)
++.|++|+|++|.++.. ..+...+.. .++|++|+|++|.++.. ....++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35678888888887765 223333443 36788888888877653 1112467777777777764433333
Q ss_pred -cCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccC----CC-CCCCCCCC
Q 041121 79 -QHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPI----PD-LGGFSSMK 152 (574)
Q Consensus 79 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~----~~-l~~l~~L~ 152 (574)
...++|++|+|++|.++......+.. ++..++. |++|+|++|.+++.. .. +...++|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~ 214 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME---------------GLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH---------------HHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH---------------HHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcC
Confidence 24567777777777765433332222 3344555 777777777766421 22 45556677
Q ss_pred EEEccCcccccc----cchhhhccCCCCEEEccCCCCCcc
Q 041121 153 RLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDL 188 (574)
Q Consensus 153 ~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l 188 (574)
+|+|++|.|+.. ++.++..++.|++|+|++|.|++.
T Consensus 215 ~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred eEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 777777776543 233444556677777777766543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=8.7e-12 Score=123.68 Aligned_cols=85 Identities=22% Similarity=0.130 Sum_probs=62.5
Q ss_pred cccEEEccC-CcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEec
Q 041121 429 LIKSLELSS-NKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDL 507 (574)
Q Consensus 429 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~L 507 (574)
+|+.|+|++ |.|++..+..|.++++|++|+|++|+|+++.+..|.++++|+.|+|++|+|++..+..|..++ |+.|+|
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 357777775 777766667777777777777777777777777777777777777777777766666666655 777777
Q ss_pred cCCcCcc
Q 041121 508 SYNNLSG 514 (574)
Q Consensus 508 s~N~l~~ 514 (574)
++|++.+
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 7777763
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=3.3e-13 Score=134.36 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=93.8
Q ss_pred CcccEEEccCCcCCCCCCccc----c-CCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEE
Q 041121 58 SNFVSIDLSFNQLQGSIPDSS----Q-HMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLH 132 (574)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~ 132 (574)
+.|++|++++|.++......+ . ..++|++|+|++|.++......+ ...+++ |++|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l------------------~~~L~~-L~~L~ 132 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL------------------LPVFLR-ARKLG 132 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT------------------HHHHHT-EEEEE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH------------------HHHHHh-ccHhh
Confidence 456667777766654322222 2 22567777777776653322221 122344 77777
Q ss_pred ccCCcccccCCC-C-----CCCCCCCEEEccCcccccc----cchhhhccCCCCEEEccCCCCCcccCccccccCCchhh
Q 041121 133 LEVNHFTGPIPD-L-----GGFSSMKRLYLSDNLLNGT----INKSIGQIFKLEITCLSQNSLTDLANIQIKGKLPDLSS 202 (574)
Q Consensus 133 L~~n~l~~~~~~-l-----~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~ 202 (574)
|++|.++..... + ...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.....+... +
T Consensus 133 Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-----L 207 (372)
T 3un9_A 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-----L 207 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-----G
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-----H
Confidence 777766542221 2 2356677777777776542 33344566677777777776654322211111 1
Q ss_pred cCCCCCCeEeccCCcccCCCCCCCCCCcEEEcCCCccccccccc----ccCCCCccEEECCCCCCCCCCCcchhcCC---
Q 041121 203 RFGTSNPGIDISSNHFEGPIPPLPSNSSFLNLSKNRFSRSISLC----SISGSKLTYIDLSSNLLSGKLPDCWWMFD--- 275 (574)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~n~i~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--- 275 (574)
.. .++|++|+|++|.|+...... +...++|++|+|++|.|+......+..+.
T Consensus 208 ~~---------------------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 208 DR---------------------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA 266 (372)
T ss_dssp GG---------------------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC---
T ss_pred hc---------------------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCC
Confidence 11 234555666666555433222 22456777777777777643333333321
Q ss_pred --CCcEEE--ccCcccc
Q 041121 276 --SLVILD--LGNNSFS 288 (574)
Q Consensus 276 --~L~~L~--L~~N~l~ 288 (574)
.|+.+. +..+.+.
T Consensus 267 ~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 267 EGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ---CEEECCCC----CH
T ss_pred CccchhhHhhhcCCccC
Confidence 155555 4444443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=1.1e-08 Score=102.45 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCcccc
Q 041121 345 KTPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYR 424 (574)
Q Consensus 345 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (574)
+...+|..+..|+.+.+..+ ++.+...+|.++..++.+.+..+- .......|
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i---------------------------~~i~~~aF 282 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV---------------------------KTVPYLLC 282 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC---------------------------SEECTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc---------------------------eecccccc
Confidence 44556677777777777654 443445566665555433321110 00111223
Q ss_pred cccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCC
Q 041121 425 STLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPL 499 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l 499 (574)
.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 34444555555555555444455566666666666433 44444555555566666555443 443444555544
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=9.1e-09 Score=103.12 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=99.0
Q ss_pred CChhhcCCCCCCEEEccCCcccccCCccccccccCccccCCCCccccccccccCCCccccccccCcccccccCCCccccc
Q 041121 346 TPFQLCQFAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKVYYYTFVGPPYVHHYSFQDKVMPTWKGSGREYRS 425 (574)
Q Consensus 346 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (574)
....+..+..++.+.+..+ +..+...+|.++..|+.+.+..+- .......|.
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v---------------------------~~I~~~aF~ 260 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNV---------------------------TSIGSFLLQ 260 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTC---------------------------CEECTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCCc---------------------------cEeCccccc
Confidence 3456667778888887655 333556677777777665543321 112233456
Q ss_pred ccCcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEE
Q 041121 426 TLGLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVM 505 (574)
Q Consensus 426 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 505 (574)
.+.+|+.+.+..+ ++.....+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 6777888888654 55466678999999999999999998788889999999999999765 776778899999999998
Q ss_pred eccCC
Q 041121 506 DLSYN 510 (574)
Q Consensus 506 ~Ls~N 510 (574)
.+..+
T Consensus 339 ~ip~~ 343 (379)
T 4h09_A 339 SYPKS 343 (379)
T ss_dssp CCCTT
T ss_pred EECCc
Confidence 87654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.4e-09 Score=107.13 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=35.0
Q ss_pred CCCCCCEEEccCcccccccchhhh---ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCccc
Q 041121 147 GFSSMKRLYLSDNLLNGTINKSIG---QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFE 219 (574)
Q Consensus 147 ~l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~ 219 (574)
.+++|++|++++|.+....+..+. .+++|++|+|+.|.+++.....+... ...+++|+.|+++.|.++
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-----L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-----VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-----HHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-----cccCCcceEEECCCCcCC
Confidence 356666666666666543333332 35566666666666554221111110 133456666666666655
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=3.1e-09 Score=94.57 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=82.0
Q ss_pred hhhhhcCCCCCcEEECCCC-CCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--------CCcCCcccEEEccCCcCCC
Q 041121 4 LLMRSLRLHSLRYLNLEEN-NLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--------SNISSNFVSIDLSFNQLQG 72 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~L~~L~Ls~n~i~~ 72 (574)
+.+.+...+.|++|+|++| .|.+. ..+.+++...++|++|+|++|.|.+. ....+.|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 5567788899999999998 88765 44556778888999999999988764 1112578888888888774
Q ss_pred C----CCccccCCCCCCEEEc--cCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCccc
Q 041121 73 S----IPDSSQHMVYLEHLSL--MFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFT 139 (574)
Q Consensus 73 ~----~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~ 139 (574)
. +...+...+.|++|+| ++|.+.......+.. .+...+. |++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~---------------~L~~n~~-L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN---------------MLEKNTT-LLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH---------------HHHHCSS-CCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH---------------HHHhCCC-cCEEeccCCCCC
Confidence 3 4556667777888888 777776443333332 3333444 666666666554
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=7.9e-09 Score=101.87 Aligned_cols=176 Identities=12% Similarity=0.028 Sum_probs=91.7
Q ss_pred ccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEccCCcccccCCCCCCCCCCCEEE
Q 041121 76 DSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHLEVNHFTGPIPDLGGFSSMKRLY 155 (574)
Q Consensus 76 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~ 155 (574)
.+...+++|+.|.+............. ....++. .+..+|+ |+.|.+++|.-... +.+. +++|++|+
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~---------~~~~L~~-ll~~~P~-L~~L~L~g~~~l~l-~~~~-~~~L~~L~ 199 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWI---------EQVDLSP-VLDAMPL-LNNLKIKGTNNLSI-GKKP-RPNLKSLE 199 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGC---------BCCBCHH-HHHTCTT-CCEEEEECCBTCBC-CSCB-CTTCSEEE
T ss_pred HhhhhcchhhheeecCcchhhcccccc---------cccCHHH-HHhcCCC-CcEEEEeCCCCcee-cccc-CCCCcEEE
Confidence 345567899999887643321000000 0011222 4556787 99999988732212 2243 78999999
Q ss_pred ccCcccccccchhhh--ccCCCCEEEccCCCCCcccCccccccCCchhhcCCCCCCeEeccCCcccCCC------CCCCC
Q 041121 156 LSDNLLNGTINKSIG--QIFKLEITCLSQNSLTDLANIQIKGKLPDLSSRFGTSNPGIDISSNHFEGPI------PPLPS 227 (574)
Q Consensus 156 L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~ 227 (574)
+..+.+.......+. .+++|+.|+|+.+.-.......+...-+......+++|+.|++.+|.+.... ...++
T Consensus 200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~ 279 (362)
T 2ra8_A 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279 (362)
T ss_dssp EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG
T ss_pred EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC
Confidence 999888755555554 6899999998632100000000100001110123566666666666654211 01245
Q ss_pred CCcEEEcCCCcccccccccc----cCCCCccEEECCCCCCC
Q 041121 228 NSSFLNLSKNRFSRSISLCS----ISGSKLTYIDLSSNLLS 264 (574)
Q Consensus 228 ~L~~L~L~~n~i~~~~~~~~----~~~~~L~~L~L~~n~l~ 264 (574)
+|+.|+|+.|.+.......+ ..+++|+.|++++|.|+
T Consensus 280 ~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 56666666666554322111 23456666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=1.2e-08 Score=90.63 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=72.5
Q ss_pred hhhcCCCCCCcEEEccCC-CCCCCCCcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCccCchhhhhcccCCC
Q 041121 31 FQVIGKLHSLKTLTSHSC-YLRPLSNISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLS 109 (574)
Q Consensus 31 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 109 (574)
.+.+...+.|++|+|++| .+..... ..+...+...++|++|+|++|.+.......+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~----------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~----- 87 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTL----------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAE----- 87 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHH----------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-----
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHH----------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-----
Confidence 345666677777766666 5543200 013344556667777777777766433333332
Q ss_pred CCccccccccccccccccCcEEEccCCccccc-----CCCCCCCCCCCEEEc--cCcccccc----cchhhhccCCCCEE
Q 041121 110 DNKLAIIQNMSSGCLKNSLESLHLEVNHFTGP-----IPDLGGFSSMKRLYL--SDNLLNGT----INKSIGQIFKLEIT 178 (574)
Q Consensus 110 ~n~l~~l~~~~~~~l~~~L~~L~L~~n~l~~~-----~~~l~~l~~L~~L~L--~~n~i~~~----~~~~~~~l~~L~~L 178 (574)
.+...+. |++|+|++|.+... ...+...+.|++|+| ++|.|... +...+...+.|++|
T Consensus 88 ----------~L~~n~~-L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 88 ----------MLKVNNT-LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp ----------HHHHCSS-CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ----------HHHhCCC-cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 3333444 77777777776642 122555667777777 66777643 34455566778888
Q ss_pred EccCCCCC
Q 041121 179 CLSQNSLT 186 (574)
Q Consensus 179 ~Ls~N~l~ 186 (574)
++++|.+.
T Consensus 157 ~L~~n~i~ 164 (185)
T 1io0_A 157 GYHFTQQG 164 (185)
T ss_dssp ECCCSSHH
T ss_pred eccCCCCC
Confidence 88777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=3.7e-07 Score=85.21 Aligned_cols=65 Identities=29% Similarity=0.336 Sum_probs=27.9
Q ss_pred cCCCCEEeCCCCcCccc--CCccccCCCCCCEEeCCCCcccccCCCCccCCC--CCCEEeccCCcCcccCC
Q 041121 451 LVGLVALNLSRNHLTGQ--NSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLS--VLSVMDLSYNNLSGKIP 517 (574)
Q Consensus 451 l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p 517 (574)
+++|++|+|++|+|+++ ++..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44444444444444432 223333444444444444444432 1122222 45555555555544444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=2.4e-07 Score=86.49 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=64.6
Q ss_pred cccCcccEEEccCCcCCC--CCcHhhhhcCCCCEEeCCCCcCcccCCccccCCC--CCCEEeCCCCcccccCCC------
Q 041121 425 STLGLIKSLELSSNKLNG--AVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLK--SLDFLDLSRNQLVGGIPS------ 494 (574)
Q Consensus 425 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~~------ 494 (574)
..+++|+.|+|++|.|++ .++..+..+++|+.|+|++|+|++. ..+..+. .|++|+|++|.+.+..|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999986 3446788999999999999999865 3344444 999999999999875542
Q ss_pred -CccCCCCCCEEe
Q 041121 495 -SLSPLSVLSVMD 506 (574)
Q Consensus 495 -~l~~l~~L~~L~ 506 (574)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367788898886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=6.7e-07 Score=77.26 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=68.0
Q ss_pred hhhhhcCCCCCcEEECCCCCCCCCCchhhhcCCCCCCcEEEccCCC-CCCC-----CC---cCCcccEEEccCC-cCCCC
Q 041121 4 LLMRSLRLHSLRYLNLEENNLANCSDWFQVIGKLHSLKTLTSHSCY-LRPL-----SN---ISSNFVSIDLSFN-QLQGS 73 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-----~~---~~~~L~~L~Ls~n-~i~~~ 73 (574)
||.....-..|+.||++++.|++. ....+..|++|++|+|++|. |++. .. ..++|++|+|++| +|+..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~--GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSI--GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGG--GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCCccHH--HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 453333345799999999998876 12368999999999999995 6664 22 1347999999999 48866
Q ss_pred CCccccCCCCCCEEEccCCc
Q 041121 74 IPDSSQHMVYLEHLSLMFNE 93 (574)
Q Consensus 74 ~~~~~~~l~~L~~L~L~~n~ 93 (574)
.-..+.++++|++|+++++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 55677889999999999885
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.93 E-value=8.9e-06 Score=67.04 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=30.8
Q ss_pred EEeCCCCcCc-ccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCCcCc
Q 041121 456 ALNLSRNHLT-GQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYNNLS 513 (574)
Q Consensus 456 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 513 (574)
.++.++++++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 12332221 35666666666666555556666666665554444443
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.7e-06 Score=74.73 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=68.2
Q ss_pred CcccEEEccCCcCCCCCcHhhhhcCCCCEEeCCCCc-CcccCCccccCC----CCCCEEeCCCC-cccccCCCCccCCCC
Q 041121 428 GLIKSLELSSNKLNGAVPEEIMDLVGLVALNLSRNH-LTGQNSPKIGQL----KSLDFLDLSRN-QLVGGIPSSLSPLSV 501 (574)
Q Consensus 428 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N-~i~~~~~~~l~~l~~ 501 (574)
..|+.||++++.|++.--..+.++++|++|+|++|. |++..-..+..+ ++|++|+|++| +|+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 458999999999986656677899999999999995 776544555554 47999999998 588755556778999
Q ss_pred CCEEeccCCc
Q 041121 502 LSVMDLSYNN 511 (574)
Q Consensus 502 L~~L~Ls~N~ 511 (574)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.83 E-value=1e-05 Score=71.31 Aligned_cols=89 Identities=7% Similarity=0.039 Sum_probs=62.4
Q ss_pred hhhhhcCCCCCcEEECCCC-CCCCC--CchhhhcCCCCCCcEEEccCCCCCCC--CCc------CCcccEEEccCCcCCC
Q 041121 4 LLMRSLRLHSLRYLNLEEN-NLANC--SDWFQVIGKLHSLKTLTSHSCYLRPL--SNI------SSNFVSIDLSFNQLQG 72 (574)
Q Consensus 4 l~~~l~~l~~L~~L~Ls~n-~i~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------~~~L~~L~Ls~n~i~~ 72 (574)
+.+.+.+-+.|++|+|++| .|.+. ..+.+++..-..|+.|+|++|+|.+. ..+ ...|++|+|++|.|..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 4455667788888999885 77655 44556788888888888888888765 111 2578888888888764
Q ss_pred C----CCccccCCCCCCEEEccCC
Q 041121 73 S----IPDSSQHMVYLEHLSLMFN 92 (574)
Q Consensus 73 ~----~~~~~~~l~~L~~L~L~~n 92 (574)
. +.+++..-+.|++|+|+++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 3 4445566667888888754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=4.3e-05 Score=67.22 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=62.5
Q ss_pred cccEEEccCC-cCCC----CCCccccCCCCCCEEEccCCcCccCchhhhhcccCCCCCccccccccccccccccCcEEEc
Q 041121 59 NFVSIDLSFN-QLQG----SIPDSSQHMVYLEHLSLMFNELEGGIPKFFGNMLNLSDNKLAIIQNMSSGCLKNSLESLHL 133 (574)
Q Consensus 59 ~L~~L~Ls~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~n~l~~l~~~~~~~l~~~L~~L~L 133 (574)
.|++|+|++| +|.. .+.+++..-+.|++|+|++|.+.......++. ++..-.. |++|+|
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~---------------aL~~N~t-L~~L~L 105 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE---------------LIETSPS-LRVLNV 105 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH---------------HHHHCSS-CCEEEC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH---------------HHhcCCc-cCeEec
Confidence 4444455543 4432 24455566667777777777776444444332 2333333 777777
Q ss_pred cCCccccc----C-CCCCCCCCCCEEEccCc---cccc----ccchhhhccCCCCEEEccCCCC
Q 041121 134 EVNHFTGP----I-PDLGGFSSMKRLYLSDN---LLNG----TINKSIGQIFKLEITCLSQNSL 185 (574)
Q Consensus 134 ~~n~l~~~----~-~~l~~l~~L~~L~L~~n---~i~~----~~~~~~~~l~~L~~L~Ls~N~l 185 (574)
++|.|... + ..+..-+.|++|+|++| .+.. .+..++...+.|+.|+++.|.+
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 77777641 1 11445566777777654 3332 2445666677788887776543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00092 Score=54.84 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=47.4
Q ss_pred cEEEccCCCCC--CCC-CcCCcccEEEccCCcCCCCCCccccCCCCCCEEEccCCcCc
Q 041121 41 KTLTSHSCYLR--PLS-NISSNFVSIDLSFNQLQGSIPDSSQHMVYLEHLSLMFNELE 95 (574)
Q Consensus 41 ~~L~l~~n~l~--~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 95 (574)
..++.++++++ .++ .+.++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888887 774 56678999999999999888889999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.35 E-value=8.8 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=26.8
Q ss_pred cCCCCCcHhhhhcCCCCEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 041121 439 KLNGAVPEEIMDLVGLVALNLSRNHLTGQNSPKIGQLKSLDFLDLSRN 486 (574)
Q Consensus 439 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 486 (574)
.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444445556666666666666554 33345556666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.72 E-value=10 Score=28.64 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=40.6
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcccccCCCCccCCCCCCEEeccCC
Q 041121 461 RNHLTGQNSPKIGQLKSLDFLDLSRNQLVGGIPSSLSPLSVLSVMDLSYN 510 (574)
Q Consensus 461 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N 510 (574)
+..++.+...+|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44677777889999999999999876 55577789999999999988764
Done!