AmiGO: BLAST Results


BLAST match view associations BLAST with CUL1 CUL1 CUL1 cullin 1	protein from Arabidopsis thaliana	3.3e-63
BLAST match view associations BLAST with AT1G59790 AT1G59790 AT1G59790	protein from Arabidopsis thaliana	2.1e-45
BLAST match view associations BLAST with CUL2 CUL2 CUL2 AT1G02980	protein from Arabidopsis thaliana	1.2e-42
BLAST match view associations BLAST with AT1G59800 AT1G59800 AT1G59800	protein from Arabidopsis thaliana	2.6e-31
BLAST match view associations BLAST with culC culC culC cullin C	gene from Dictyostelium discoideum	6.3e-07
BLAST match view associations BLAST with Cul4a Cul4a Cul4a cullin 4A	protein from Mus musculus	7.3e-06
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	2.5e-05
BLAST match view associations BLAST with CUL4A CUL4A CUL4A Cullin-4A	protein from Homo sapiens	2.7e-05
BLAST match view associations BLAST with Cul4b Cul4b Cul4b cullin 4B	protein from Mus musculus	0.00010
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Canis lupus familiaris	0.00014
BLAST match view associations BLAST with lin19 lin19 lin19 lin-19-like	protein from Drosophila melanogaster	0.00016
BLAST match view associations BLAST with CUL4A CUL4A CUL4A Uncharacterized protein	protein from Canis lupus familiaris	0.00017
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Gallus gallus	0.00026
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	0.00026
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	0.00027
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Sus scrofa	0.00055
BLAST match view associations BLAST with Cul4b Cul4b Cul4b cullin 4B	gene from Rattus norvegicus	0.00077
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Bos taurus	0.00081
BLAST match view associations BLAST with cul4b cul4b cul4b cullin 4B	gene_product from Danio rerio	0.00094
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041127
        (285 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2132377 - symbol:CUL1 "cullin 1" species:3702 ...   504  3.3e-63   2
TAIR|locus:2025881 - symbol:AT1G59790 species:3702 "Arabi...   477  2.1e-45   1
TAIR|locus:2018645 - symbol:AT1G43140 species:3702 "Arabi...   377  3.3e-45   2
TAIR|locus:2024755 - symbol:CUL2 "cullin 2" species:3702 ...   346  1.2e-42   3
TAIR|locus:2025941 - symbol:AT1G59800 species:3702 "Arabi...   344  2.6e-31   1
DICTYBASE|DDB_G0284903 - symbol:culC "cullin C" species:4...   106  6.3e-07   2
MGI|MGI:1914487 - symbol:Cul4a "cullin 4A" species:10090 ...   134  7.3e-06   1
UNIPROTKB|A6NE76 - symbol:CUL4B "Cullin-4B" species:9606 ...   121  2.5e-05   1
UNIPROTKB|Q13619 - symbol:CUL4A "Cullin-4A" species:9606 ...   129  2.7e-05   1
MGI|MGI:1919834 - symbol:Cul4b "cullin 4B" species:10090 ...   125  0.00010   1
UNIPROTKB|E2RMN1 - symbol:CUL4B "Uncharacterized protein"...   124  0.00014   1
FB|FBgn0015509 - symbol:lin19 "lin-19-like" species:7227 ...   111  0.00016   2
UNIPROTKB|F1Q284 - symbol:CUL4A "Uncharacterized protein"...   122  0.00017   1
UNIPROTKB|E1BQK9 - symbol:CUL4B "Uncharacterized protein"...   121  0.00026   1
UNIPROTKB|K4DI93 - symbol:CUL4B "Cullin 4B, isoform CRA_e...   121  0.00026   1
UNIPROTKB|Q13620 - symbol:CUL4B "Cullin-4B" species:9606 ...   121  0.00027   1
UNIPROTKB|F1RUC1 - symbol:CUL4B "Uncharacterized protein"...   117  0.00055   1
RGD|1564494 - symbol:Cul4b "cullin 4B" species:10116 "Rat...   116  0.00077   1
UNIPROTKB|E1BFD5 - symbol:CUL4B "Uncharacterized protein"...   117  0.00081   1
ZFIN|ZDB-GENE-041008-208 - symbol:cul4b "cullin 4B" speci...   116  0.00094   1


>TAIR|locus:2132377 [details] [associations]
            symbol:CUL1 "cullin 1" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0000151
            "ubiquitin ligase complex" evidence=IPI] [GO:0009733 "response to
            auxin stimulus" evidence=IMP] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=IMP] [GO:0005819 "spindle"
            evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000794 "condensed nuclear
            chromosome" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0009753 "response to jasmonic acid stimulus" evidence=IMP]
            [GO:0009867 "jasmonic acid mediated signaling pathway"
            evidence=TAS] [GO:0010265 "SCF complex assembly" evidence=IPI]
            [GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
            cycle" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006499
            "N-terminal protein myristoylation" evidence=RCA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=RCA]
            [GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA]
            [GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0009790
            "embryo development" evidence=RCA] [GO:0009880 "embryonic pattern
            specification" evidence=RCA] [GO:0010072 "primary shoot apical
            meristem specification" evidence=RCA] [GO:0010162 "seed dormancy
            process" evidence=RCA] [GO:0010431 "seed maturation" evidence=RCA]
            [GO:0010564 "regulation of cell cycle process" evidence=RCA]
            [GO:0043090 "amino acid import" evidence=RCA] [GO:0045595
            "regulation of cell differentiation" evidence=RCA] [GO:0048316
            "seed development" evidence=RCA] [GO:0048366 "leaf development"
            evidence=IMP;RCA] [GO:0048825 "cotyledon development" evidence=RCA]
            [GO:0051301 "cell division" evidence=RCA] [GO:0010087 "phloem or
            xylem histogenesis" evidence=IMP] InterPro:IPR001373
            InterPro:IPR016157 InterPro:IPR016158 InterPro:IPR019559
            Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256 PROSITE:PS50069
            SMART:SM00182 SMART:SM00884 UniPathway:UPA00143 GO:GO:0005829
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
            GO:GO:0009873 GO:GO:0005819 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0042752 GO:GO:0009793 GO:GO:0016567 GO:GO:0007049
            GO:GO:0000794 GO:GO:0006511 eggNOG:COG5647 SUPFAM:SSF75632
            GO:GO:0031461 GO:GO:0000151 GO:GO:0009524 GO:GO:0009867
            InterPro:IPR016159 SUPFAM:SSF74788 EMBL:AC002330 EMBL:AL161494
            KO:K03347 HOGENOM:HOG000176712 EMBL:AJ318017 EMBL:AY046030
            EMBL:AY133878 EMBL:AK222216 IPI:IPI00524614 PIR:T01092
            RefSeq:NP_001031575.1 RefSeq:NP_001031576.1 RefSeq:NP_001190661.1
            RefSeq:NP_567243.1 UniGene:At.24877 UniGene:At.67849
            ProteinModelPortal:Q94AH6 SMR:Q94AH6 IntAct:Q94AH6 STRING:Q94AH6
            PaxDb:Q94AH6 PRIDE:Q94AH6 EnsemblPlants:AT4G02570.1
            EnsemblPlants:AT4G02570.2 EnsemblPlants:AT4G02570.3
            EnsemblPlants:AT4G02570.4 GeneID:825648 KEGG:ath:AT4G02570
            TAIR:At4g02570 InParanoid:Q94AH6 OMA:LDEGHEN PhylomeDB:Q94AH6
            ProtClustDB:CLSN2689296 Genevestigator:Q94AH6 GermOnline:AT4G02570
            GO:GO:0010265 Uniprot:Q94AH6
        Length = 738

 Score = 504 (182.5 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 100/207 (48%), Positives = 134/207 (64%)

Query:     1 MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
             M+RK  D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C +  +P HD 
Sbjct:     1 MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58

Query:    61 DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
                Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL K W+NHK + +WLSR F  L 
Sbjct:    59 S-QQLYDKYREAFEEYINSTVLPALREKHDEF-MLRELFKRWSNHKVMVRWLSRFFYYLD 116

Query:   121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDL 180
               +I R +LP LN  G++CFRDLV+  +  KVK AV+AL             L+KNVLD+
Sbjct:   117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDI 176

Query:   181 FVEIE-DMAAYYSRKASNWILQDSFDY 206
             +VEI       Y     +++LQD+  Y
Sbjct:   177 YVEIGMGQMERYEEDFESFMLQDTSSY 203

 Score = 163 (62.4 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 38/85 (44%), Positives = 52/85 (61%)

Query:   184 IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLAN------I 236
             ++D ++YYSRKAS+WI +DS  DY++   ECLK ERER +HYL  SS  KL        +
Sbjct:   197 LQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELL 256

Query:   237 LSF----MQKGEFRCRQLLRGHKLD 257
             + F    ++K    CR LLR  K+D
Sbjct:   257 VVFASQLLEKEHSGCRALLRDDKVD 281

 Score = 50 (22.7 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 26/83 (31%), Positives = 37/83 (44%)

Query:   206 YLVNVGECLKNE---RERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSII 262
             Y+V V EC +N     +      +   N+ +A   S      F C  +L   K  G    
Sbjct:   349 YMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATF-CDNIL---KKGG---- 400

Query:   263 CCYSKKSKNELAFEETLEKVLKL 285
                S+K  +E A E+TLEKV+KL
Sbjct:   401 ---SEKLSDE-AIEDTLEKVVKL 419


>TAIR|locus:2025881 [details] [associations]
            symbol:AT1G59790 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
            InterPro:IPR001373 Pfam:PF00888 PROSITE:PS01256 PROSITE:PS50069
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC007258 GO:GO:0006511
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788 KO:K03347
            HOGENOM:HOG000176712 IPI:IPI00517906 PIR:H96621 RefSeq:NP_176188.1
            UniGene:At.52273 ProteinModelPortal:Q9XIE9 SMR:Q9XIE9 PRIDE:Q9XIE9
            EnsemblPlants:AT1G59790.1 GeneID:842272 KEGG:ath:AT1G59790
            TAIR:At1g59790 OMA:QNELLVM ProtClustDB:CLSN2679703
            Genevestigator:Q9XIE9 Uniprot:Q9XIE9
        Length = 374

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 104/245 (42%), Positives = 145/245 (59%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             EEGW  +++G TKL RI EG  E  F   +   LYTI+YD+C +  R  + +   Q+Y+K
Sbjct:    15 EEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQ--RSDYSQ---QLYEK 69

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-- 126
             Y++++ DY    VLP LREKHDE D+LREL+K W NHK + KWLS+ F+ +    + R  
Sbjct:    70 YRKVIEDYTIQTVLPSLREKHDE-DMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRSK 128

Query:   127 MALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--- 183
             + +P L+  G++CF DLV+  M+   K+ V+AL             LVKNVLD++VE   
Sbjct:   129 IPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKNVLDIYVENGM 188

Query:   184 --------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPS 228
                           ++D A+YYSRKAS W  +DS  DY++ V ECLK ERER +HYL   
Sbjct:   189 GTLEKYEEDFESFMLQDTASYYSRKASRWTEEDSCPDYMIKVEECLKMERERVTHYLHSI 248

Query:   229 SNRKL 233
             +  KL
Sbjct:   249 TEPKL 253


>TAIR|locus:2018645 [details] [associations]
            symbol:AT1G43140 species:3702 "Arabidopsis thaliana"
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] InterPro:IPR001373 InterPro:IPR016158
            InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256
            PROSITE:PS50069 SMART:SM00182 SMART:SM00884 EMBL:CP002684
            GenomeReviews:CT485782_GR Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006511 SUPFAM:SSF75632 GO:GO:0031461 InterPro:IPR016159
            SUPFAM:SSF74788 KO:K03347 EMBL:AC005687 IPI:IPI00938797
            RefSeq:NP_175007.2 UniGene:At.74523 ProteinModelPortal:P0CH31
            SMR:P0CH31 EnsemblPlants:AT1G43140.1 GeneID:3767291
            KEGG:ath:AT1G43140 TAIR:At1g43140 HOGENOM:HOG000176712 OMA:RTISKTD
            Uniprot:P0CH31
        Length = 721

 Score = 377 (137.8 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 79/200 (39%), Positives = 117/200 (58%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             EEGW  ++ G  KL+RI E L E  F+   Y+ LYTI+YD+C +  +P +D    ++Y+K
Sbjct:    18 EEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQ--QPPNDYS-QELYNK 74

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
             Y+ ++  Y    VLP +RE+H EY +LREL+K WANHK L +WLSR    L   Y+ R  
Sbjct:    75 YRGVVDHYNKETVLPSMRERHGEY-MLRELVKRWANHKILVRWLSRFCFYLDRFYVARRG 133

Query:   129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--IED 186
             LP LN  G + F DLV++ ++ + KD ++AL            TLVKNV+D++    +  
Sbjct:   134 LPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVYCGNGVGQ 193

Query:   187 MAAYYSRKASNWILQDSFDY 206
             M  Y      +++LQD+  Y
Sbjct:   194 MVIY-EEDFESFLLQDTASY 212

 Score = 130 (50.8 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 25/51 (49%), Positives = 36/51 (70%)

Query:   184 IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
             ++D A+YYSRKAS W  +DS  DY++   ECLK E+ER ++YL  ++  KL
Sbjct:   206 LQDTASYYSRKASRWSQEDSCPDYMLKAEECLKLEKERVTNYLHSTTEPKL 256


>TAIR|locus:2024755 [details] [associations]
            symbol:CUL2 "cullin 2" species:3702 "Arabidopsis
            thaliana" [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
            [GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001373
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 GO:GO:0019005
            eggNOG:COG5647 SUPFAM:SSF75632 EMBL:AC009525 InterPro:IPR016159
            SUPFAM:SSF74788 KO:K03347 HOGENOM:HOG000176712
            ProtClustDB:CLSN2689296 EMBL:AK117909 EMBL:BT006231 IPI:IPI00541917
            PIR:D86160 RefSeq:NP_171797.2 UniGene:At.42569 HSSP:Q9JLV5
            ProteinModelPortal:Q9SRZ0 SMR:Q9SRZ0 STRING:Q9SRZ0 PaxDb:Q9SRZ0
            PRIDE:Q9SRZ0 EnsemblPlants:AT1G02980.1 GeneID:839415
            KEGG:ath:AT1G02980 TAIR:At1g02980 InParanoid:Q9SRZ0 OMA:NDYHERS
            PhylomeDB:Q9SRZ0 Genevestigator:Q9SRZ0 Uniprot:Q9SRZ0
        Length = 742

 Score = 346 (126.9 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
 Identities = 81/209 (38%), Positives = 115/209 (55%)

Query:     1 MKRKASDSEEGWDYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHD 59
             M +K S  E GW  +E G  KL++I E +  E  F+    M LYT V+++C +  +P +D
Sbjct:     1 MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQ--KPPND 58

Query:    60 EDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPL 119
                 Q+YD+Y  +  DY    VLP +REKH EY +LREL+K WAN K L +WLS  F  L
Sbjct:    59 YS-QQIYDRYGGVYVDYNKQTVLPAIREKHGEY-MLRELVKRWANQKILVRWLSHFFEYL 116

Query:   120 QAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLD 179
                Y  R + P L+A G   FRDLV++ ++ K KDAV+AL             L+KNV+D
Sbjct:   117 DRFYTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVID 176

Query:   180 LFVEIEDMAAY--YSRKASNWILQDSFDY 206
             ++     M     Y     +++L+DS  Y
Sbjct:   177 VYCG-NGMGELVKYEEDFESFLLEDSASY 204

 Score = 118 (46.6 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
 Identities = 31/85 (36%), Positives = 46/85 (54%)

Query:   184 IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLA----NIL- 237
             +ED A+YYSR AS W  ++S  DY++   E L+ E+ER ++YL  ++  KL     N L 
Sbjct:   198 LEDSASYYSRNASRWNQENSCPDYMIKAEESLRLEKERVTNYLHSTTEPKLVAKVQNELL 257

Query:   238 -----SFMQKGEFRCRQLLRGHKLD 257
                    ++     CR LLR  K+D
Sbjct:   258 VVVAKQLIENEHSGCRALLRDDKMD 282

 Score = 40 (19.1 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query:   267 KKSKNELAFEETLEKVLKL 285
             +K +NE   E TLEKV+KL
Sbjct:   406 EKLENE-DLELTLEKVVKL 423


>TAIR|locus:2025941 [details] [associations]
            symbol:AT1G59800 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
            InterPro:IPR001373 Pfam:PF00888 PROSITE:PS01256 PROSITE:PS50069
            EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC007258 GO:GO:0006511
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788 KO:K03347
            HOGENOM:HOG000176712 IPI:IPI00546899 PIR:A96622 RefSeq:NP_176189.1
            UniGene:At.52274 ProteinModelPortal:Q9XIE8 SMR:Q9XIE8
            EnsemblPlants:AT1G59800.1 GeneID:842273 KEGG:ath:AT1G59800
            TAIR:At1g59800 eggNOG:NOG310081 InParanoid:Q9XIE8 OMA:DECMLRE
            PhylomeDB:Q9XIE8 ProtClustDB:CLSN2913533 Genevestigator:Q9XIE8
            Uniprot:Q9XIE8
        Length = 255

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 80/221 (36%), Positives = 115/221 (52%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             E  W  +++GFTKL R+ EG  E AFN E  MM++T  Y IC         ++P Q+YDK
Sbjct:    10 EVEWSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICAY-------KNPQQLYDK 62

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
             Y++++ +Y    VLP LREKHDE  +LREL K W  HK L +  SR  + L   ++ +  
Sbjct:    63 YRELIENYAIQTVLPSLREKHDEC-MLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKKG 121

Query:   129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIEDMA 188
             LP L   G++CFRD V+  M+    +A++AL             LV+NV+D+FVE   M 
Sbjct:   122 LPSLREVGLNCFRDQVYREMQSMAAEAILALIHKEREGEQIDRELVRNVIDVFVE-NGMG 180

Query:   189 AY--YSRKASNWILQDSFDYLVNVGECLKNERERASHYLQP 227
                 Y       +LQD+  Y  +       E     + L+P
Sbjct:   181 TLKKYEEDFERLMLQDTASYYSSKASRWIQEESCLDYTLKP 221


>DICTYBASE|DDB_G0284903 [details] [associations]
            symbol:culC "cullin C" species:44689 "Dictyostelium
            discoideum" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0016567 "protein ubiquitination" evidence=IEA]
            InterPro:IPR001373 InterPro:IPR016157 InterPro:IPR016158
            InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256
            PROSITE:PS50069 SMART:SM00182 SMART:SM00884 UniPathway:UPA00143
            dictyBase:DDB_G0284903 GO:GO:0005634 GenomeReviews:CM000153_GR
            EMBL:AAFI02000073 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0016567 GO:GO:0006511 eggNOG:COG5647 SUPFAM:SSF75632
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788 HSSP:Q9JLV5
            KO:K03869 RefSeq:XP_639922.1 ProteinModelPortal:Q54NZ5 SMR:Q54NZ5
            STRING:Q54NZ5 EnsemblProtists:DDB0266742 GeneID:8624834
            KEGG:ddi:DDB_G0284903 OMA:YRTESEN Uniprot:Q54NZ5
        Length = 769

 Score = 106 (42.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 39/175 (22%), Positives = 81/175 (46%)

Query:    13 DYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQ 71
             D+ +R +  LK     + Q+ A NL  +  LY   Y++  +     H    D +Y+  ++
Sbjct:    24 DFPKRTWKLLKTAMRQIHQQNASNLS-FEELYRNGYNMVLQK----HG---DLLYNNLKK 75

Query:    72 ILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPE 131
             ++  ++ + V   + E  DE  LL EL  SW NHK     +  + + +   Y+ +  L  
Sbjct:    76 MVDKHLKA-VAKTVSESIDEKFLL-ELNSSWINHKTSMLMIRDILMYMDRNYVKQNNLSS 133

Query:   132 LNAFGISCFRDLVFEA--MKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI 184
             +   G+  FRD V     +KD++ + ++++             L+KN++ + +++
Sbjct:   134 VFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQMLIDL 188

 Score = 83 (34.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query:   188 AAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLANI 236
             +++Y  ++   I   S  DY+  V  CLK E ER SHYL  SS  KL  +
Sbjct:   209 SSHYQAQSQTLIQTCSCPDYMKKVEICLKEELERVSHYLDSSSEPKLKEV 258


>MGI|MGI:1914487 [details] [associations]
            symbol:Cul4a "cullin 4A" species:10090 "Mus musculus"
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
            [GO:0007346 "regulation of mitotic cell cycle" evidence=IMP]
            [GO:0019048 "virus-host interaction" evidence=IEA] [GO:0031461
            "cullin-RING ubiquitin ligase complex" evidence=IEA] [GO:0031464
            "Cul4A-RING ubiquitin ligase complex" evidence=ISO] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=ISO]
            [GO:0045750 "positive regulation of S phase of mitotic cell cycle"
            evidence=IMP] [GO:0051246 "regulation of protein metabolic process"
            evidence=IMP] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
            evidence=ISO] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            UniPathway:UPA00143 MGI:MGI:1914487 GO:GO:0019048 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567 GO:GO:0006511
            GO:GO:0045732 eggNOG:COG5647 SUPFAM:SSF75632 GO:GO:0045750
            InterPro:IPR016159 SUPFAM:SSF74788 GeneTree:ENSGT00550000074299
            HOGENOM:HOG000176712 KO:K10609 GO:GO:0031464 HOVERGEN:HBG003619
            CTD:8451 EMBL:AK168215 EMBL:AK170722 EMBL:BC010211 IPI:IPI00321407
            RefSeq:NP_666319.2 UniGene:Mm.212861 ProteinModelPortal:Q3TCH7
            SMR:Q3TCH7 STRING:Q3TCH7 PhosphoSite:Q3TCH7 PaxDb:Q3TCH7
            PRIDE:Q3TCH7 Ensembl:ENSMUST00000016680 GeneID:99375 KEGG:mmu:99375
            UCSC:uc009kww.2 InParanoid:Q3TCH7 OMA:DREVPEY OrthoDB:EOG42FSH0
            ChiTaRS:CUL4A NextBio:353901 Bgee:Q3TCH7 CleanEx:MM_CUL4A
            Genevestigator:Q3TCH7 GermOnline:ENSMUSG00000031446 Uniprot:Q3TCH7
        Length = 759

 Score = 134 (52.2 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 55/261 (21%), Positives = 115/261 (44%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KL    + +Q      +NLE+   LY  V ++C       H   P  +Y + 
Sbjct:    57 NYTQDTWRKLHEAVKAIQSSTSIRYNLEE---LYQAVENLCS------HKVSPT-LYKQL 106

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +Q+  D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+ + + 
Sbjct:   107 RQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 166

Query:   129 LPELNAFGISCFRD-LVFEAM-KDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI-- 184
             LP +   G+  FR+ ++ + M + K  D ++ L            +L++++L +  ++  
Sbjct:   167 LPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLLRSLLSMLSDLQV 226

Query:   185 ----------EDMAAYYSRKASNWILQDSF--DYLVNVGECLKNERERASHYLQPSSNRK 232
                       E+    Y+ +    ++QD    +YL +V + L+ E +R   YL  S+ + 
Sbjct:   227 YKDSFELKFLEETNCLYAAEGQR-LMQDREVPEYLNHVSKRLEEEADRVITYLDHSTQKP 285

Query:   233 LANILSFMQKGEFRCRQLLRG 253
             L   +     GE     L +G
Sbjct:   286 LIACVEKQLLGEHLTAILQKG 306


>UNIPROTKB|A6NE76 [details] [associations]
            symbol:CUL4B "Cullin-4B" species:9606 "Homo sapiens"
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] InterPro:IPR001373 Pfam:PF00888 GO:GO:0006511
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788 EMBL:AC002476
            EMBL:AL451005 HGNC:HGNC:2555 IPI:IPI00644450
            ProteinModelPortal:A6NE76 SMR:A6NE76 STRING:A6NE76 PRIDE:A6NE76
            Ensembl:ENST00000371323 HOGENOM:HOG000006909 HOVERGEN:HBG084579
            ArrayExpress:A6NE76 Bgee:A6NE76 Uniprot:A6NE76
        Length = 234

 Score = 121 (47.7 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 48/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:    15 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 64

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:    65 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 124

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   125 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 181

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   182 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 224


>UNIPROTKB|Q13619 [details] [associations]
            symbol:CUL4A "Cullin-4A" species:9606 "Homo sapiens"
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0019048
            "virus-host interaction" evidence=IEA] [GO:0045750 "positive
            regulation of S phase of mitotic cell cycle" evidence=IEA]
            [GO:0051246 "regulation of protein metabolic process" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0016567 "protein
            ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
            ligase complex" evidence=IDA] [GO:0080008 "Cul4-RING ubiquitin
            ligase complex" evidence=IDA] [GO:0000082 "G1/S transition of
            mitotic cell cycle" evidence=TAS] [GO:0008285 "negative regulation
            of cell proliferation" evidence=TAS] [GO:0097193 "intrinsic
            apoptotic signaling pathway" evidence=TAS] [GO:0007050 "cell cycle
            arrest" evidence=TAS] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            UniPathway:UPA00143 GO:GO:0019048 GO:GO:0008285 GO:GO:0000082
            GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0007050
            GO:GO:0016567 GO:GO:0006511 GO:GO:0097193 eggNOG:COG5647
            SUPFAM:SSF75632 GO:GO:0045750 InterPro:IPR016159 SUPFAM:SSF74788
            KO:K10609 GO:GO:0031464 HOVERGEN:HBG003619 EMBL:AF077188
            EMBL:AY365124 EMBL:AB178950 EMBL:AL136221 EMBL:BC008308
            EMBL:AB012193 EMBL:U58090 IPI:IPI00419273 IPI:IPI00549919
            RefSeq:NP_001008895.1 RefSeq:NP_003580.1 UniGene:Hs.339735 PDB:2HYE
            PDB:4A0K PDBsum:2HYE PDBsum:4A0K ProteinModelPortal:Q13619
            SMR:Q13619 DIP:DIP-31610N IntAct:Q13619 MINT:MINT-4532640
            STRING:Q13619 PhosphoSite:Q13619 DMDM:108936013 PaxDb:Q13619
            PRIDE:Q13619 DNASU:8451 Ensembl:ENST00000326335
            Ensembl:ENST00000375440 Ensembl:ENST00000375441
            Ensembl:ENST00000451881 GeneID:8451 KEGG:hsa:8451 UCSC:uc010agu.3
            CTD:8451 GeneCards:GC13P113863 HGNC:HGNC:2554 MIM:603137
            neXtProt:NX_Q13619 PharmGKB:PA27050 InParanoid:Q13619 OMA:KVSATLY
            EvolutionaryTrace:Q13619 GenomeRNAi:8451 NextBio:31624
            ArrayExpress:Q13619 Bgee:Q13619 CleanEx:HS_CUL4A
            Genevestigator:Q13619 GermOnline:ENSG00000139842 GO:GO:0051246
            Uniprot:Q13619
        Length = 759

 Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 59/270 (21%), Positives = 114/270 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KL      +Q      +NLE+   LY  V ++C       H   P  +Y + 
Sbjct:    57 NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCS------HKVSP-MLYKQL 106

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
             +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+     
Sbjct:   107 RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 166

Query:   129 LPELNAFGISCFRD-LVFEAM-KDKVKDAVVALXXXXXXXXXXXXTLVKNVL----DLFV 182
             LP +   G+  FR  ++ + M + K  D ++ L            +L++++L    DL V
Sbjct:   167 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 226

Query:   183 E--------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                      +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct:   227 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 286

Query:   234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
                +     GE     L +G  H LD + +
Sbjct:   287 IACVEKQLLGEHLTAILQKGLDHLLDENRV 316


>MGI|MGI:1919834 [details] [associations]
            symbol:Cul4b "cullin 4B" species:10090 "Mus musculus"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
            [GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=IMP] [GO:0045750 "positive regulation of S phase of
            mitotic cell cycle" evidence=IMP] InterPro:IPR001373
            InterPro:IPR016157 InterPro:IPR016158 InterPro:IPR019559
            Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256 PROSITE:PS50069
            SMART:SM00182 SMART:SM00884 UniPathway:UPA00143 MGI:MGI:1919834
            GO:GO:0005634 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0016567 GO:GO:0007049 GO:GO:0006511 GO:GO:0045732
            eggNOG:COG5647 SUPFAM:SSF75632 GO:GO:0045750 EMBL:CH466570
            InterPro:IPR016159 SUPFAM:SSF74788 GeneTree:ENSGT00550000074299
            KO:K10609 HOVERGEN:HBG003619 OrthoDB:EOG42FSH0 CTD:8450
            GO:GO:0031465 EMBL:AY330868 EMBL:AK012410 EMBL:AK032701
            EMBL:AK160998 EMBL:AL513356 EMBL:BC004026 EMBL:BC010347
            EMBL:AB093259 IPI:IPI00224689 IPI:IPI00473987 RefSeq:NP_001103612.1
            RefSeq:NP_082564.3 UniGene:Mm.327675 ProteinModelPortal:A2A432
            SMR:A2A432 IntAct:A2A432 STRING:A2A432 PhosphoSite:A2A432
            PaxDb:A2A432 PRIDE:A2A432 Ensembl:ENSMUST00000050083
            Ensembl:ENSMUST00000115118 GeneID:72584 KEGG:mmu:72584
            UCSC:uc009taa.2 InParanoid:Q91YZ7 ChiTaRS:CUL4B NextBio:336543
            Bgee:A2A432 Genevestigator:A2A432 Uniprot:A2A432
        Length = 970

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 49/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C       H    + +Y + 
Sbjct:   268 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCS------HKISAN-LYKQL 317

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   318 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 377

Query:   129 LPELNAFGISCFRDLVFEAMKDKVK--DAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K + K  D ++ L            +L++++L +  +++ 
Sbjct:   378 LPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQ- 436

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
                 Y        LQ++       G+ L  ERE    YL   + R
Sbjct:   437 ---IYQDSFEQQFLQETNRLYAAEGQKLMQERE-VPEYLHHVNKR 477


>UNIPROTKB|E2RMN1 [details] [associations]
            symbol:CUL4B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 SUPFAM:SSF75632
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788
            GeneTree:ENSGT00550000074299 OMA:FEDSLDF EMBL:AAEX03026836
            Ensembl:ENSCAFT00000029435 Uniprot:E2RMN1
        Length = 982

 Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
 Identities = 49/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   280 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 329

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ K W NH      +  +FL L   Y+ + + 
Sbjct:   330 RQICEDHIKAQIHQFREDSLDSVLFLKKIDKCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 389

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   390 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 446

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   447 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 489


>FB|FBgn0015509 [details] [associations]
            symbol:lin19 "lin-19-like" species:7227 "Drosophila
            melanogaster" [GO:0000152 "nuclear ubiquitin ligase complex"
            evidence=ISS] [GO:0019005 "SCF ubiquitin ligase complex"
            evidence=NAS] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IEA] [GO:0007095 "mitotic G2 DNA damage
            checkpoint" evidence=IGI] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            UniPathway:UPA00143 EMBL:AE013599 GO:GO:0007095 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0016567 HOGENOM:HOG000021491 GO:GO:0006511
            GO:GO:0019005 eggNOG:COG5647 SUPFAM:SSF75632 InterPro:IPR016159
            SUPFAM:SSF74788 GeneTree:ENSGT00550000074299 KO:K03347 EMBL:L41642
            EMBL:AF136343 EMBL:BT010290 RefSeq:NP_523655.1 RefSeq:NP_724621.1
            RefSeq:NP_724622.1 RefSeq:NP_724623.1 UniGene:Dm.7926
            ProteinModelPortal:Q24311 SMR:Q24311 DIP:DIP-19461N IntAct:Q24311
            MINT:MINT-989395 STRING:Q24311 PaxDb:Q24311
            EnsemblMetazoa:FBtr0088845 EnsemblMetazoa:FBtr0088846
            EnsemblMetazoa:FBtr0088847 EnsemblMetazoa:FBtr0088848 GeneID:35742
            KEGG:dme:Dmel_CG1877 UCSC:CG1877-RA CTD:35742 FlyBase:FBgn0015509
            InParanoid:Q24311 OMA:NECIAES OrthoDB:EOG42280P PhylomeDB:Q24311
            GenomeRNAi:35742 NextBio:794991 Bgee:Q24311 GermOnline:CG1877
            Uniprot:Q24311
        Length = 774

 Score = 111 (44.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 42/198 (21%), Positives = 84/198 (42%)

Query:     3 RKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCK-PARPHHDED 61
             +K  + ++ W  L  G   + ++FE   E++     YM  YT VYD C    A P     
Sbjct:    11 QKLVNLDDIWSELVEG---IMQVFE--HEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSS 65

Query:    62 PD---------QMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWL 112
                        ++YD+ +Q L  Y+ S++L   +    E  LL    K W +++F +  L
Sbjct:    66 GKTGGAQLVGKKLYDRLEQFLKSYL-SELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVL 124

Query:   113 SRVFLPLQAGYIPR------MALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXX 166
               +   L   ++ R        + ++    +  ++  +F+ + + V  AV+         
Sbjct:   125 DGICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQG 184

Query:   167 XXXXXTLVKNVLDLFVEI 184
                  +LV++V++ +VE+
Sbjct:   185 KLINRSLVRDVIECYVEL 202

 Score = 54 (24.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query:   185 EDMAAYYSRKASNWILQDSFDYLVNVGECLKN-ERERASHYLQPSSNRKLANILSFMQKG 243
             E  AA +S +  NW+      Y +  GE + N  R  +S Y   +S  +++ +L F  + 
Sbjct:   568 EFYAARHSGRKLNWL------YQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQL 621

Query:   244 EFRCRQL 250
              F  +QL
Sbjct:   622 SFTVQQL 628


>UNIPROTKB|F1Q284 [details] [associations]
            symbol:CUL4A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 SUPFAM:SSF75632
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788
            GeneTree:ENSGT00550000074299 KO:K10609 CTD:8451 OMA:KVSATLY
            EMBL:AAEX03013408 RefSeq:XP_849542.3 Ensembl:ENSCAFT00000010211
            GeneID:607683 KEGG:cfa:607683 Uniprot:F1Q284
        Length = 761

 Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
 Identities = 55/270 (20%), Positives = 116/270 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KL      +Q      +NLE+   LY  V ++C       H   P  +Y + 
Sbjct:    59 NYTQDTWQKLHEAVRAIQSSTSIRYNLEE---LYQAVENLCS------HKVSPT-LYKQL 108

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +Q+  D++ +++L +  +  D    L+++   W +H      +  +FL L   Y+ + + 
Sbjct:   109 RQVCEDHVQAQILQFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 168

Query:   129 LPELNAFGISCFRD-LVFEAM-KDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI-- 184
             LP +   G+  FR+ ++ + M + K  D ++ L            +L++++L +  ++  
Sbjct:   169 LPSIWDMGLELFRNHIISDKMVQSKSIDGILLLIERERNGEAVDRSLLRSLLSMLSDLQV 228

Query:   185 ----------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                       E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct:   229 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 288

Query:   234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
                +     GE     L +G  H LD + +
Sbjct:   289 IACVEKQLLGEHLTAILHKGLDHLLDENRV 318


>UNIPROTKB|E1BQK9 [details] [associations]
            symbol:CUL4B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin
            ligase complex" evidence=IEA] [GO:0045732 "positive regulation of
            protein catabolic process" evidence=IEA] [GO:0045750 "positive
            regulation of S phase of mitotic cell cycle" evidence=IEA]
            InterPro:IPR001373 InterPro:IPR016157 InterPro:IPR016158
            InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256
            PROSITE:PS50069 SMART:SM00182 SMART:SM00884 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006511 GO:GO:0045732 SUPFAM:SSF75632
            GO:GO:0045750 InterPro:IPR016159 SUPFAM:SSF74788
            GeneTree:ENSGT00550000074299 OMA:FEDSLDF GO:GO:0031465
            EMBL:AADN02013619 IPI:IPI00584907 Ensembl:ENSGALT00000013942
            Uniprot:E1BQK9
        Length = 884

 Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 53/260 (20%), Positives = 109/260 (41%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   181 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 230

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ K W +H      +  +FL L   Y+ + + 
Sbjct:   231 RQICEDHIKAQIHQFREDSLDSVLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 290

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI-- 184
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +  ++  
Sbjct:   291 LPSIWDMGLELFRTHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQI 350

Query:   185 ----------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                       E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct:   351 YQDSFEHRFLEETNRLYAAEGQRLMQEREVPEYLHHVNKRLEEEADRIITYLDQSTQKPL 410

Query:   234 ANILSFMQKGEFRCRQLLRG 253
                +     GE     L +G
Sbjct:   411 IATVEKQLLGEHLTAILQKG 430


>UNIPROTKB|K4DI93 [details] [associations]
            symbol:CUL4B "Cullin 4B, isoform CRA_e" species:9606 "Homo
            sapiens" [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031625 "ubiquitin protein ligase
            binding" evidence=IEA] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511 EMBL:CH471107
            SUPFAM:SSF75632 GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788
            EMBL:AC002476 EMBL:AL451005 HGNC:HGNC:2555 Ensembl:ENST00000336592
            Uniprot:K4DI93
        Length = 900

 Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
 Identities = 48/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   198 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 247

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   248 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 307

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   308 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 364

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   365 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 407


>UNIPROTKB|Q13620 [details] [associations]
            symbol:CUL4B "Cullin-4B" species:9606 "Homo sapiens"
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0045732
            "positive regulation of protein catabolic process" evidence=IEA]
            [GO:0045750 "positive regulation of S phase of mitotic cell cycle"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0007049
            "cell cycle" evidence=NAS] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005634 GO:GO:0006281
            Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567 GO:GO:0007049
            GO:GO:0006511 EMBL:CH471107 GO:GO:0045732 eggNOG:COG5647
            SUPFAM:SSF75632 GO:GO:0045750 InterPro:IPR016159 SUPFAM:SSF74788
            PDB:4A0C PDBsum:4A0C KO:K10609 HOVERGEN:HBG003619 OrthoDB:EOG42FSH0
            EMBL:AY365125 EMBL:AF212995 EMBL:AK123688 EMBL:AK299081
            EMBL:AK315037 EMBL:BX537787 EMBL:AC002476 EMBL:AL451005
            EMBL:BC036216 EMBL:AB014595 EMBL:U58091 IPI:IPI00179057
            IPI:IPI00480142 IPI:IPI00965290 RefSeq:NP_001073341.1
            RefSeq:NP_003579.3 UniGene:Hs.102914 PDB:2DO7 PDB:4A0L PDB:4A64
            PDBsum:2DO7 PDBsum:4A0L PDBsum:4A64 ProteinModelPortal:Q13620
            SMR:Q13620 DIP:DIP-31609N IntAct:Q13620 STRING:Q13620
            PhosphoSite:Q13620 DMDM:296439468 PaxDb:Q13620 PRIDE:Q13620
            DNASU:8450 Ensembl:ENST00000371322 Ensembl:ENST00000404115
            GeneID:8450 KEGG:hsa:8450 UCSC:uc004esv.3 UCSC:uc004esw.3 CTD:8450
            GeneCards:GC0XM119658 H-InvDB:HIX0017025 HGNC:HGNC:2555
            HPA:CAB017786 HPA:HPA011880 MIM:300304 MIM:300354
            neXtProt:NX_Q13620 Orphanet:85293 PharmGKB:PA27051 OMA:FEDSLDF
            EvolutionaryTrace:Q13620 GenomeRNAi:8450 NextBio:31618
            PMAP-CutDB:Q13620 ArrayExpress:Q13620 Bgee:Q13620 CleanEx:HS_CUL4B
            Genevestigator:Q13620 GermOnline:ENSG00000158290 GO:GO:0031465
            Uniprot:Q13620
        Length = 913

 Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
 Identities = 48/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   211 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 260

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   261 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 320

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   321 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 377

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   378 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 420


>UNIPROTKB|F1RUC1 [details] [associations]
            symbol:CUL4B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0031461 "cullin-RING ubiquitin ligase complex"
            evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=IEA] InterPro:IPR001373 InterPro:IPR016158
            Pfam:PF00888 PROSITE:PS50069 GO:GO:0006511 SUPFAM:SSF75632
            GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788
            GeneTree:ENSGT00550000074299 EMBL:CU693400
            Ensembl:ENSSSCT00000013782 OMA:SSTERED Uniprot:F1RUC1
        Length = 700

 Score = 117 (46.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 48/225 (21%), Positives = 95/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   264 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 313

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +     D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   314 RQICEDHIKAQIHQFREYSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 373

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   374 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 430

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   431 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 473


>RGD|1564494 [details] [associations]
            symbol:Cul4b "cullin 4B" species:10116 "Rattus norvegicus"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005886 "plasma membrane" evidence=ISO]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
            [GO:0045732 "positive regulation of protein catabolic process"
            evidence=ISO] [GO:0045750 "positive regulation of S phase of
            mitotic cell cycle" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            RGD:1564494 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006511
            SUPFAM:SSF75632 GO:GO:0031461 InterPro:IPR016159 SUPFAM:SSF74788
            IPI:IPI00362333 PRIDE:D3ZNZ7 Ensembl:ENSRNOT00000003523
            UCSC:RGD:1564494 ArrayExpress:D3ZNZ7 Uniprot:D3ZNZ7
        Length = 754

 Score = 116 (45.9 bits), Expect = 0.00077, P = 0.00077
 Identities = 48/225 (21%), Positives = 95/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:    80 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 129

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +     D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   130 RQICEDHIKAQIHQFKTGFKDTVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 189

Query:   129 LPELNAFGISCFRDLVFEAMKDKVK--DAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K + K  D ++ L            +L++++L++  +++ 
Sbjct:   190 LPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLLRSLLNMLSDLQ- 248

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
                 Y        LQ++       G+ L  ERE    YL   + R
Sbjct:   249 ---IYQDSFEQRFLQETNRLYAAEGQKLMQERE-VPEYLHHVNKR 289


>UNIPROTKB|E1BFD5 [details] [associations]
            symbol:CUL4B "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0045750 "positive regulation of S phase of mitotic cell
            cycle" evidence=IEA] [GO:0045732 "positive regulation of protein
            catabolic process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin
            ligase complex" evidence=IEA] [GO:0005886 "plasma membrane"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031625
            "ubiquitin protein ligase binding" evidence=IEA] [GO:0006511
            "ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR001373 InterPro:IPR016157 InterPro:IPR016158
            InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557 PROSITE:PS01256
            PROSITE:PS50069 SMART:SM00182 SMART:SM00884 Gene3D:1.10.10.10
            InterPro:IPR011991 GO:GO:0006511 GO:GO:0045732 SUPFAM:SSF75632
            GO:GO:0045750 InterPro:IPR016159 SUPFAM:SSF74788
            GeneTree:ENSGT00550000074299 OMA:FEDSLDF GO:GO:0031465
            EMBL:DAAA02067221 EMBL:DAAA02067222 IPI:IPI00707913
            Ensembl:ENSBTAT00000024713 Uniprot:E1BFD5
        Length = 965

 Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
 Identities = 48/225 (21%), Positives = 95/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:   263 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 312

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +     D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   313 RQICEDHIKAQIHQFREYSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 372

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   373 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 429

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   430 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 472


>ZFIN|ZDB-GENE-041008-208 [details] [associations]
            symbol:cul4b "cullin 4B" species:7955 "Danio rerio"
            [GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IEA]
            [GO:0006511 "ubiquitin-dependent protein catabolic process"
            evidence=IEA] InterPro:IPR001373 InterPro:IPR016157
            InterPro:IPR016158 InterPro:IPR019559 Pfam:PF00888 Pfam:PF10557
            PROSITE:PS01256 PROSITE:PS50069 SMART:SM00182 SMART:SM00884
            ZFIN:ZDB-GENE-041008-208 Gene3D:1.10.10.10 InterPro:IPR011991
            GO:GO:0006511 SUPFAM:SSF75632 GO:GO:0031461 InterPro:IPR016159
            SUPFAM:SSF74788 GeneTree:ENSGT00550000074299 EMBL:BX004980
            IPI:IPI00637421 Ensembl:ENSDART00000085295 ArrayExpress:F1R029
            Bgee:F1R029 Uniprot:F1R029
        Length = 885

 Score = 116 (45.9 bits), Expect = 0.00094, P = 0.00094
 Identities = 54/260 (20%), Positives = 109/260 (41%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y    + KLK   E +Q      +NLE+   LY  V ++C       H     ++Y + 
Sbjct:   182 NYTNETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCS------HKISA-KLYKQL 231

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             + +  D++ +++  +  +  D    L+++ K W +H      +  +FL L   Y+ + + 
Sbjct:   232 RVVCEDHIKAQIDQFREDALDSVLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 291

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVL-------- 178
             LP +   G+  FR  +   +K   K  D ++ L            +L++++L        
Sbjct:   292 LPSIWDMGLELFRFYIISDLKVQSKTIDGILLLIERERSGEAVDRSLLRSLLSMLSDLQI 351

Query:   179 --DLFVE--IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
               D F +  +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct:   352 YQDSFEQRFLEETNRLYAAEGQRLMQEREVPEYLHHVNKRLEEEADRVITYLDQSTQKSL 411

Query:   234 ANILSFMQKGEFRCRQLLRG 253
                +     GE     L +G
Sbjct:   412 IATVEKQLLGEHLTAILQKG 431


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      285       273    0.0010  114 3  11 22  0.44    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  20
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  222 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.87u 0.11s 22.98t   Elapsed:  00:00:01
  Total cpu time:  22.87u 0.11s 22.98t   Elapsed:  00:00:01
  Start:  Tue May 21 03:47:57 2013   End:  Tue May 21 03:47:58 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with CUL1 CUL1 CUL1 cullin 1	protein from Arabidopsis thaliana	3.3e-63
BLAST match view associations BLAST with AT1G59790 AT1G59790 AT1G59790	protein from Arabidopsis thaliana	2.1e-45
BLAST match view associations BLAST with CUL2 CUL2 CUL2 AT1G02980	protein from Arabidopsis thaliana	1.2e-42
BLAST match view associations BLAST with AT1G59800 AT1G59800 AT1G59800	protein from Arabidopsis thaliana	2.6e-31
BLAST match view associations BLAST with culC culC culC cullin C	gene from Dictyostelium discoideum	6.3e-07
BLAST match view associations BLAST with Cul4a Cul4a Cul4a cullin 4A	protein from Mus musculus	7.3e-06
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	2.5e-05
BLAST match view associations BLAST with CUL4A CUL4A CUL4A Cullin-4A	protein from Homo sapiens	2.7e-05
BLAST match view associations BLAST with Cul4b Cul4b Cul4b cullin 4B	protein from Mus musculus	0.00010
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Canis lupus familiaris	0.00014
BLAST match view associations BLAST with lin19 lin19 lin19 lin-19-like	protein from Drosophila melanogaster	0.00016
BLAST match view associations BLAST with CUL4A CUL4A CUL4A Uncharacterized protein	protein from Canis lupus familiaris	0.00017
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Gallus gallus	0.00026
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	0.00026
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Cullin-4B	protein from Homo sapiens	0.00027
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Sus scrofa	0.00055
BLAST match view associations BLAST with Cul4b Cul4b Cul4b cullin 4B	gene from Rattus norvegicus	0.00077
BLAST match view associations BLAST with CUL4B CUL4B CUL4B Uncharacterized protein	protein from Bos taurus	0.00081
BLAST match view associations BLAST with cul4b cul4b cul4b cullin 4B	gene_product from Danio rerio	0.00094