BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041127
(285 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
Length = 738
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 187/288 (64%), Gaps = 32/288 (11%)
Query: 1 MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
M+RK D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C + +P HD
Sbjct: 1 MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58
Query: 61 DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
Q+YDKY++ +Y+ S VLP LREKHDE+ +LREL K W+NHK + +WLSR F L
Sbjct: 59 -SQQLYDKYREAFEEYINSTVLPALREKHDEF-MLRELFKRWSNHKVMVRWLSRFFYYLD 116
Query: 121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
+I R +LP LN G++CFRDLV+ + KVK AV+AL+D+EREGE+IDR L+KNVLD+
Sbjct: 117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDI 176
Query: 181 FVEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
+VEI +D ++YYSRKAS+WI +DS DY++ ECLK ERER +
Sbjct: 177 YVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVA 236
Query: 223 HYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLDGHS 260
HYL SS KL + ++K CR LLR K+D S
Sbjct: 237 HYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLS 284
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790
PE=3 SV=2
Length = 374
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/246 (45%), Positives = 155/246 (63%), Gaps = 26/246 (10%)
Query: 9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
EEGW +++G TKL RI EG E F + LYTI+YD+C + + + Q+Y+K
Sbjct: 15 EEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQRS-----DYSQQLYEK 69
Query: 69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-- 126
Y++++ DY VLP LREKHDE D+LREL+K W NHK + KWLS+ F+ + + R
Sbjct: 70 YRKVIEDYTIQTVLPSLREKHDE-DMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRSK 128
Query: 127 MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--- 183
+ +P L+ G++CF DLV+ M+ K+ V+ALI +EREGE+IDR LVKNVLD++VE
Sbjct: 129 IPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKNVLDIYVENGM 188
Query: 184 --------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPS 228
++D A+YYSRKAS W +DS DY++ V ECLK ERER +HYL
Sbjct: 189 GTLEKYEEDFESFMLQDTASYYSRKASRWTEEDSCPDYMIKVEECLKMERERVTHYLHSI 248
Query: 229 SNRKLA 234
+ KL
Sbjct: 249 TEPKLV 254
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140
PE=3 SV=1
Length = 721
Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 153/244 (62%), Gaps = 22/244 (9%)
Query: 9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
EEGW ++ G KL+RI E L E F+ Y+ LYTI+YD+C + +P +D ++Y+K
Sbjct: 18 EEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQ--QPPNDYS-QELYNK 74
Query: 69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
Y+ ++ Y VLP +RE+H EY +LREL+K WANHK L +WLSR L Y+ R
Sbjct: 75 YRGVVDHYNKETVLPSMRERHGEY-MLRELVKRWANHKILVRWLSRFCFYLDRFYVARRG 133
Query: 129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE----- 183
LP LN G + F DLV++ ++ + KD ++ALI +EREGE+IDRTLVKNV+D++
Sbjct: 134 LPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVYCGNGVGQ 193
Query: 184 ------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSN 230
++D A+YYSRKAS W +DS DY++ ECLK E+ER ++YL ++
Sbjct: 194 MVIYEEDFESFLLQDTASYYSRKASRWSQEDSCPDYMLKAEECLKLEKERVTNYLHSTTE 253
Query: 231 RKLA 234
KL
Sbjct: 254 PKLV 257
>sp|Q9XIE8|CLL3_ARATH Cullin-like protein 3 OS=Arabidopsis thaliana GN=At1g59800 PE=3
SV=2
Length = 255
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 148/243 (60%), Gaps = 26/243 (10%)
Query: 12 WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQ 71
W +++GFTKL R+ EG E AFN E MM++T Y IC ++P Q+YDKY++
Sbjct: 13 WSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICAY-------KNPQQLYDKYRE 65
Query: 72 ILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPE 131
++ +Y VLP LREKHDE +LREL K W HK L + SR + L ++ + LP
Sbjct: 66 LIENYAIQTVLPSLREKHDEC-MLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKKGLPS 124
Query: 132 LNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE-------- 183
L G++CFRD V+ M+ +A++ALI +EREGE+IDR LV+NV+D+FVE
Sbjct: 125 LREVGLNCFRDQVYREMQSMAAEAILALIHKEREGEQIDRELVRNVIDVFVENGMGTLKK 184
Query: 184 ---------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKL 233
++D A+YYS KAS WI ++S DY + +CL+ ERER +HYL P++ KL
Sbjct: 185 YEEDFERLMLQDTASYYSSKASRWIQEESCLDYTLKPQQCLQRERERVTHYLHPTTEPKL 244
Query: 234 ANI 236
+
Sbjct: 245 FEV 247
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1
Length = 742
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 161/286 (56%), Gaps = 33/286 (11%)
Query: 1 MKRKASDSEEGWDYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHD 59
M +K S E GW +E G KL++I E + E F+ M LYT V+++C + +P +D
Sbjct: 1 MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQ--KPPND 58
Query: 60 EDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPL 119
Q+YD+Y + DY VLP +REKH EY +LREL+K WAN K L +WLS F L
Sbjct: 59 YS-QQIYDRYGGVYVDYNKQTVLPAIREKHGEY-MLRELVKRWANQKILVRWLSHFFEYL 116
Query: 120 QAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLD 179
Y R + P L+A G FRDLV++ ++ K KDAV+ALI +EREGE+IDR L+KNV+D
Sbjct: 117 DRFYTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVID 176
Query: 180 LFVE-----------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERA 221
++ +ED A+YYSR AS W ++S DY++ E L+ E+ER
Sbjct: 177 VYCGNGMGELVKYEEDFESFLLEDSASYYSRNASRWNQENSCPDYMIKAEESLRLEKERV 236
Query: 222 SHYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLD 257
++YL ++ KL + ++ CR LLR K+D
Sbjct: 237 TNYLHSTTEPKLVAKVQNELLVVVAKQLIENEHSGCRALLRDDKMD 282
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1
Length = 769
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
D +Y+ ++++ ++ + V + E DE LL EL SW NHK + + + +
Sbjct: 67 DLLYNNLKKMVDKHLKA-VAKTVSESIDEKFLL-ELNSSWINHKTSMLMIRDILMYMDRN 124
Query: 123 YIPRMALPELNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + L + G+ FRD V +KD++ + +++++ +EREGE IDR L+KN++ +
Sbjct: 125 YVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQM 184
Query: 181 FVE---------IED--------MAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
++ IED +++Y ++ I S DY+ V CLK E ER S
Sbjct: 185 LIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTLIQTCSCPDYMKKVEICLKEELERVS 244
Query: 223 HYLQPSSNRKLANI 236
HYL SS KL +
Sbjct: 245 HYLDSSSEPKLKEV 258
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3
Length = 759
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 31/270 (11%)
Query: 13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
+Y + + KL +Q +NLE+ LY V ++C P +Y +
Sbjct: 57 NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCSHKVSP-------MLYKQL 106
Query: 70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
+Q D++ +++LP+ + D L+++ W +H + +FL L Y+
Sbjct: 107 RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 166
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--- 183
LP + G+ FR + + ++ K D ++ LI+RER GE +DR+L++++L + +
Sbjct: 167 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 226
Query: 184 ---------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
+E+ Y+ + + + +YL +V + L+ E +R YL S+ + L
Sbjct: 227 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 286
Query: 234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
+ GE L +G H LD + +
Sbjct: 287 IACVEKQLLGEHLTAILQKGLDHLLDENRV 316
>sp|Q24311|CUL1_DROME Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2
Length = 774
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 12 WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCK-PARPHHDEDPD------- 63
W L G + ++FE E++ YM YT VYD C A P
Sbjct: 20 WSELVEG---IMQVFE--HEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSSGKTGGAQLV 74
Query: 64 --QMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
++YD+ +Q L Y+ S++L + E LL K W +++F + L + L
Sbjct: 75 GKKLYDRLEQFLKSYL-SELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNR 133
Query: 122 GYIPR------MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVK 175
++ R + ++ + ++ +F+ + + V AV+ I+ ER+G+ I+R+LV+
Sbjct: 134 NWVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVR 193
Query: 176 NVLDLFVEI 184
+V++ +VE+
Sbjct: 194 DVIECYVEL 202
>sp|Q9WTX6|CUL1_MOUSE Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1
Length = 776
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 39 YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
YM LYT VY+ C P++ + P ++Y + ++ L +Y+
Sbjct: 42 YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101
Query: 79 SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
+ L++ D D +L+ + W +++F +K L+ + L ++ R +
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------- 183
E+ + + +RD +F + +V +AV+ LI++ER GE I+ L+ V+ +VE
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
+ D +Y+R+++ ++ Q+ +Y+ L E+ R
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277
Query: 224 YLQPSSNRKLA 234
YL S+ +LA
Sbjct: 278 YLHESTQDELA 288
>sp|Q5R4G6|CUL1_PONAB Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1
Length = 776
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 39 YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
YM LYT VY+ C P++ + P ++Y + ++ L +Y+
Sbjct: 42 YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101
Query: 79 SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
+ L++ D D +L+ + W +++F +K L+ + L ++ R +
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------- 183
E+ + + +RD +F + +V +AV+ LI++ER GE I+ L+ V+ +VE
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
+ D +Y+R+++ ++ Q+ +Y+ L E+ R
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277
Query: 224 YLQPSSNRKLA 234
YL S+ +LA
Sbjct: 278 YLHESTQDELA 288
>sp|Q13616|CUL1_HUMAN Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2
Length = 776
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 39 YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
YM LYT VY+ C P++ + P ++Y + ++ L +Y+
Sbjct: 42 YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101
Query: 79 SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
+ L++ D D +L+ + W +++F +K L+ + L ++ R +
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------- 183
E+ + + +RD +F + +V +AV+ LI++ER GE I+ L+ V+ +VE
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
+ D +Y+R+++ ++ Q+ +Y+ L E+ R
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277
Query: 224 YLQPSSNRKLA 234
YL S+ +LA
Sbjct: 278 YLHESTQDELA 288
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1
Length = 732
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 94 LLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLV--FEAMKDK 151
L EL K W H + + + + + YI ++ G++ +RD V F + +
Sbjct: 95 FLEELNKKWNEHNKALEMIRDILMYMDRTYIESTKKTHVHPMGLNLWRDNVVHFTKIHTR 154
Query: 152 VKDAVVALIDREREGEEIDRTLVKNVLDLFVEI------EDM--------AAYYSRKASN 197
+ + ++ L+ +ER GE IDR L++NV+ +F+++ ED + +Y ++
Sbjct: 155 LLNTLLDLVQKERIGEVIDRGLMRNVIKMFMDLGESVYQEDFEKPFLDASSEFYKVESQE 214
Query: 198 WILQ-DSFDYLVNVGECLKNERERASHYLQPSSNRKLANIL 237
+I D DYL + L E ER +HYL S K+ +++
Sbjct: 215 FIESCDCGDYLKKSEKRLTEEIERVAHYLDAKSEEKITSVV 255
>sp|Q17389|CUL1_CAEEL Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1
Length = 780
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 118/308 (38%), Gaps = 75/308 (24%)
Query: 2 KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDIC----------- 50
+R DSE W L+ G R +DYM LYT VYD C
Sbjct: 7 RRMTCDSEVVWKKLQDGLDVAYR------RENMAPKDYMTLYTSVYDYCTSITLSTSRRD 60
Query: 51 -----CKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEY---DLLRELLKSW 102
+ + P D + + Q + +Y+ + V+ EK E DLL+ W
Sbjct: 61 GEDGRAESSTPARTAGADFVGHEMYQRVEEYVKAYVIAVC-EKGAELSGEDLLKYYTTEW 119
Query: 103 ANHKFLAKWLSRVFLPLQAGYIPRMALPE-------LNAFGISCFRDLVFEAMKDKVKDA 155
N + +K + +F L +I R L E + + ++ +F +KDKV DA
Sbjct: 120 ENFRISSKVMDGIFAYLNRHWI-RRELDEGHENIYMVYTLALVVWKRNLFNDLKDKVIDA 178
Query: 156 VVALIDREREGEEIDRTLVKNVLDLFVE------------------------------IE 185
++ LI ER G I+ + V++ VE +E
Sbjct: 179 MLELIRSERTGSMINSRYISGVVECLVELGVDDSETDAKKDAETKKLAVYKEFFEVKFLE 238
Query: 186 DMAAYYSRKASNWILQ--DSFDYLVNVGECLKNERERASHYLQPSSNRKLA--------- 234
+Y+++A+N++ + DY++ V L E +R YL S+ LA
Sbjct: 239 ATRGFYTQEAANFLSNGGNVTDYMIKVETRLNQEDDRCQLYLNSSTKTPLATCCESVLIS 298
Query: 235 NILSFMQK 242
N L F+Q+
Sbjct: 299 NQLDFLQR 306
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1
Length = 759
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 35/272 (12%)
Query: 13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
+Y + + KL + +Q +NLE+ LY V ++C P +Y +
Sbjct: 57 NYTQDTWRKLHEAVKAIQSSTSIRYNLEE---LYQAVENLCSHKVSP-------TLYKQL 106
Query: 70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
+Q+ D++ +++LP+ + D L+++ W +H + +FL L Y+ + +
Sbjct: 107 RQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 166
Query: 129 LPELNAFGISCFRDLVFE--AMKDKVKDAVVALIDREREGEEIDRT-------------L 173
LP + G+ FR+ + ++ K D ++ LI RER GE +DR+ +
Sbjct: 167 LPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLLRSLLSMLSDLQV 226
Query: 174 VKNVLDLFVEIEDMAAYYSRKASNWILQDS--FDYLVNVGECLKNERERASHYLQPSSNR 231
K+ +L +E+ Y+ + ++QD +YL +V + L+ E +R YL S+ +
Sbjct: 227 YKDSFELKF-LEETNCLYAAEGQR-LMQDREVPEYLNHVSKRLEEEADRVITYLDHSTQK 284
Query: 232 KLANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
L + GE L +G H LD + +
Sbjct: 285 PLIACVEKQLLGEHLTAILQKGLEHLLDENRV 316
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1
Length = 970
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
+Y + + KLK E +Q +NLE+ LY V ++C + +Y +
Sbjct: 268 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSHKISAN-------LYKQL 317
Query: 70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
+QI D++ +++ + + D L+++ + W NH + +FL L Y+ + +
Sbjct: 318 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 377
Query: 129 LPELNAFGISCFRDLVFEAMKDKVK--DAVVALIDREREGEEI 169
LP + G+ FR + K + K D ++ LI+RER GE I
Sbjct: 378 LPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAI 420
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2
Length = 777
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 107/247 (43%), Gaps = 32/247 (12%)
Query: 14 YLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQIL 73
Y+ + + LKR + +Q + + + LY Y + H E ++Y+ + ++
Sbjct: 26 YVTQTWELLKRAIQEIQRKNNSGLSFEELYRNAYTMVLHK----HGE---RLYNGLKDVI 78
Query: 74 ADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR--MALPE 131
D+M S V + E + L + +SWA+H + + + + Y+ + LP
Sbjct: 79 QDHMAS-VRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPV 137
Query: 132 LNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------ 183
N G+ +R + + D+++DA++ LI +R+ +I+ +KN D+ +
Sbjct: 138 YN-LGLDAYRTEILRQNGIGDRIRDALLELIKLDRKSNQINWHGIKNACDMLISLGIDSR 196
Query: 184 -----------IEDMAAYYSRKASNWIL--QDSFDYLVNVGECLKNERERASHYLQPSSN 230
+++ + YY NW+ D+ YL V + +E RAS YL +
Sbjct: 197 TVYEDEFERPLLKETSDYYRDVCKNWLSGDNDACFYLAQVEIAMHDEASRASRYLDKMTE 256
Query: 231 RKLANIL 237
K+ ++
Sbjct: 257 AKILQVM 263
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4
Length = 913
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
+Y + + KLK E +Q +NLE+ LY V ++C + +Y +
Sbjct: 211 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 260
Query: 70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
+QI D++ +++ + + D L+++ + W NH + +FL L Y+ + +
Sbjct: 261 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 320
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEI 169
LP + G+ FR + + +++K D ++ LI+RER GE I
Sbjct: 321 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAI 363
>sp|Q21346|CUL6_CAEEL Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1
Length = 729
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 39 YMMLYTIVYDICCKPARPHHDEDPDQMYDK--YQQILADYMPSKVLPYLREKHDEY---D 93
YMMLY VY+IC + + + + + Y+Q L +Y+ + V+ +R++ +
Sbjct: 28 YMMLYDAVYNICTTTTLANSNNNSPEFASEFLYKQ-LENYIRTYVIA-IRDRISACSGDE 85
Query: 94 LLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------LPELNAFGISCFRDLVFEA 147
LL + W N KF + + +F L ++ + + E+ + ++ F+
Sbjct: 86 LLGKCTIEWDNFKFSTRICNCIFQYLNRNFVSKKVEDKNGEIVEIYKLALDIWKAEFFDN 145
Query: 148 MKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIE-----------DMAAYYSRKAS 196
K K DA++ LI ER G I+ T + +V++ E++ D + ++
Sbjct: 146 FKVKTIDAILELILLERCGSTINSTHISSVVECLTELDIYKVSFEPQFLDATKLFYKQEV 205
Query: 197 NWILQDSFDYLVNVGECLKNERERASHYLQPSSN 230
+ +Y++ V L E R+ YL PS+N
Sbjct: 206 LNSKETVIEYMITVENRLFQEEYRSRRYLGPSTN 239
>sp|O60999|CUL1_DICDI Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1
Length = 770
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 50/266 (18%)
Query: 12 WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC--------KPARPHHDEDP- 62
W LE G K I L + F + ++ LYT VYD C K P
Sbjct: 19 WPELEEGIYK---IITDLN-KGFPKQKWIALYTHVYDYCAASQSKSSAKVGMPKQQASGA 74
Query: 63 ----DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLP 118
+ +Y++ L +M S++L K DE LL W + K+++ +F
Sbjct: 75 NYVGEDLYNRLNLFLKKHM-SQLLKLTETKMDE-PLLNYYYTEWDRYTSAMKYINNIFQY 132
Query: 119 LQAGYIPR------MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRT 172
+ +I R + E+ + +RD +F +K ++ ++++ +I+ ER G +I+
Sbjct: 133 MNRYWIKREIDDGKKEVYEIFILSLVIWRDCLFTPLKQRLTNSLLDIIESERNGYQINTH 192
Query: 173 LVKNVLDLFVE------------------------IEDMAAYYSRKASNWILQDSF-DYL 207
L+K V++ +V + YY+ +++ +I ++S DY+
Sbjct: 193 LIKGVINGYVSLGLNREKPKETILQVYKSGFEELFLTATENYYTNESAKFISENSVADYM 252
Query: 208 VNVGECLKNERERASHYLQPSSNRKL 233
V L E +R YL ++ +L
Sbjct: 253 KKVETRLNEEVKRVQQYLHQNTESEL 278
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1
Length = 732
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 98 LLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVK--DA 155
L + W +H + + + + + Y+ ++ G+ +RD V + K + + +
Sbjct: 99 LNRKWNDHNKALQMIRDILMYMDRTYVSTTKKTHVHELGLHLWRDNVVYSSKIQTRLLNT 158
Query: 156 VVALIDREREGEEIDRTLVKNVLDLFVE--------------IEDMAAYYSRKASNWILQ 201
++ L+ +ER GE IDR L++NV+ +F++ +E A +Y ++ +I
Sbjct: 159 LLDLVHKERTGEVIDRVLMRNVIKMFMDLGESVYQDDFEKPFLEASAEFYKVESMEFIES 218
Query: 202 -DSFDYLVNVGECLKNERERASHYLQPSSNRKLANIL 237
D +YL + L E ER +YL S K+ +++
Sbjct: 219 CDCGEYLKKAEKPLVEEVERVVNYLDAKSEAKITSVV 255
>sp|Q9XZJ3|CUL2_DICDI Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1
Length = 771
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 116/284 (40%), Gaps = 50/284 (17%)
Query: 40 MMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELL 99
M LY VY +C +P+ + +Y+ ++ ++ +L L K D + E L
Sbjct: 36 MFLYEDVYKLCIAQPQPY----CEPLYENIKKFFEQHVDQILLIILDTKSDT---ISEYL 88
Query: 100 KSW------------ANHKFLA-KWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFE 146
K W ++L W+++ L + G+ P + E+ G+ +++ +F
Sbjct: 89 KQWKLFFSGCELCNKVIFRYLNLNWINKKILDKKFGHPPDVY--EIQILGLMIWKERLFF 146
Query: 147 AMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE-------------------IEDM 187
+KD+V V LI ++R+GE + + ++ ++ +E+
Sbjct: 147 KIKDRVLKCVEILIQKDRDGELVQHQFISQFMESLIKLDSVDKDRTLYLIEYEASYLENT 206
Query: 188 AAYYSRKASNWILQDSFDYLVNVGEC-LKNERERASHYLQPSSNRKLANILS--FMQKG- 243
+Y+R++ +I + E + E +R+ YL SS+ K+ +L ++K
Sbjct: 207 RQFYTRESVAFIASSGISSYMKKAETRIDEEEQRSQKYLNSSSHDKMRRLLHSILIEKHK 266
Query: 244 ---EFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLK 284
+ C L+ KLD I Y S+ E LE V K
Sbjct: 267 ELLQSECINYLKDEKLD--EIYNMYKLLSRIEGGLAPVLETVQK 308
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1
Length = 768
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1
Length = 768
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1
Length = 768
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/195 (17%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 63 DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
+++Y ++++ +++ +KV + + + L+ L ++W +H+ + + + +
Sbjct: 71 EKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMDRV 129
Query: 123 YIPRMALPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
Y+ + + + G+ FRD V + ++D ++ ++ +I RER+GE +DR ++N +
Sbjct: 130 YVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQM 189
Query: 181 FVE-----------------IEDMAAYYSRKASNWILQDSFD-YLVNVGECLKNERERAS 222
+ +E A ++ ++ ++ ++S Y+ V + E ER
Sbjct: 190 LMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249
Query: 223 HYLQPSSNRKLANIL 237
H L S+ + ++
Sbjct: 250 HCLDKSTEEPIVKVV 264
>sp|O13790|CUL1_SCHPO Cullin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul1 PE=1 SV=1
Length = 767
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 110/280 (39%), Gaps = 64/280 (22%)
Query: 4 KASDSEEG-WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDP 62
K DS G WD+L+ G + +IFE L E + YM LYT +++ C ++
Sbjct: 15 KKYDSLNGTWDFLKTG---VSQIFERLDE-GMTITKYMELYTAIHNYCADASKTI---TV 67
Query: 63 DQMYDKYQQILADYMPSKVLPYLRE-------------KHDEYDLLRELLKSWANHKFLA 109
D D+ +L + + + ++ YL E H+E L K W A
Sbjct: 68 DNFNDQTANVLGEALYNNLVLYLEEYLARLRKECISQTNHEEQ--LAAYAKYWTRFTTSA 125
Query: 110 KWLSRVFLPLQAGYIPRMALPELNAFGISCFRDL-----------VFEAMKDKVKDAVVA 158
++++ +F GY+ R + N F + D+ VF ++D + ++
Sbjct: 126 RFINHLF-----GYLNRYWVKLKNRFTETLVYDIYTLCLVSWHHHVFSHIRDSLLQNLLY 180
Query: 159 LIDREREGEEIDRTLVKNVLD---------------------LFVE---IEDMAAYYSRK 194
+ ++R E D V+ +D F E IE+ +Y+++
Sbjct: 181 MFTKKRLYEPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFETNFIENTKNFYAKE 240
Query: 195 ASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
+S ++ S DYL L E E YL S+ + L
Sbjct: 241 SSEYLASHSITDYLKKAEIRLAEEEELVRLYLHESTLKPL 280
>sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC53 PE=1 SV=1
Length = 815
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/211 (18%), Positives = 93/211 (44%), Gaps = 32/211 (15%)
Query: 4 KASDSEEGWDYLERGFTKL-----------KRIFEGLQERAFNLEDYMMLYTIVYDICCK 52
++ D E W+++E G ++ KR+++ L YM +YT +Y+ C
Sbjct: 7 RSDDLEATWNFIEPGINQILGNEKNQASTSKRVYKILSPTM-----YMEVYTAIYNYCVN 61
Query: 53 PARPHHDEDPDQMYDKYQQILADYMPSKVLPYLR------EKHDEYDLLRELLKSWANHK 106
+R D + ++ + K+ YL+ ++ + L+ +K W
Sbjct: 62 KSRSSGHFSTDSRTGQSTILVGSEIYEKLKNYLKNYILNFKQSNSETFLQFYVKRWKRFT 121
Query: 107 FLAKWLSRVFLPLQAGYIP------RMALPELNAFGISCFRDLVFEAMKDKVKDAVVALI 160
A +L+ F + ++ + + ++N + +++++F+ KD + + ++ +
Sbjct: 122 IGAIFLNHAFDYMNRYWVQKERSDGKRHIFDVNTLCLMTWKEVMFDPSKDVLINELLDQV 181
Query: 161 DREREGEEIDR----TLVKNVLDLFVEIEDM 187
REG+ I R T +K+++ L ++ +D+
Sbjct: 182 TLGREGQIIQRSNISTAIKSLVALGIDPQDL 212
>sp|Q9D4H8|CUL2_MOUSE Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2
Length = 745
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 42/174 (24%)
Query: 129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIE--- 185
L E+ + +R L+ E +++ + ++ I +R GE+ ++ ++ V++ FV +E
Sbjct: 136 LMEIGELALDMWRKLMVEPLQNILIRMLLREIKNDRGGEDPNQKVIHGVINSFVHVEQYK 195
Query: 186 ------------------DMAAYYSRKASNWILQDS--FDYLVNVGECLKNERERASHYL 225
+ YY ++ASN +LQ+S Y+ V LK+E R YL
Sbjct: 196 KKFPLKFYQGIFVSPFLTETGEYYKQEASN-LLQESNCSQYMEKVLGRLKDEEIRCRKYL 254
Query: 226 QPSSNRKLANILSFMQKGEFRCRQLLRGHKL-----DGHSIICCYSKKSKNELA 274
PSS K+ + C+Q + L + HSII ++ KN++A
Sbjct: 255 HPSSYTKVIH----------ECQQRMVADHLQFLHSECHSII---QQERKNDMA 295
>sp|Q09760|CUL3_SCHPO Cullin-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cul3 PE=1 SV=2
Length = 785
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 94 LLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLV----FEAMK 149
L L+ SW +H + +S V L Y +N GI FR++V FE +
Sbjct: 121 FLSSLVNSWKDHIVSMQMISSVLKYLDKVYSKSADKVPVNENGIYIFREVVLLNSFE-IG 179
Query: 150 DKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
+K + ++ L+ ER+G I+R L+ + LD+
Sbjct: 180 EKCVETILILVYLERKGNTINRPLINDCLDML 211
>sp|Q5RCF3|CUL2_PONAB Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1
Length = 745
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIE--- 185
L E+ + +R L+ E ++ + ++ I +R GE+ ++ ++ V++ FV +E
Sbjct: 136 LMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVINSFVHVEQYK 195
Query: 186 ------------------DMAAYYSRKASNWILQDS--FDYLVNVGECLKNERERASHYL 225
+ YY ++ASN +LQ+S Y+ V LK+E R YL
Sbjct: 196 KKFPLKFYQEIFESPFLTETGEYYKQEASN-LLQESNCSQYMEKVLGRLKDEEIRCRKYL 254
Query: 226 QPSS---------NRKLANILSFMQKGEFRCRQLLRGHK 255
PSS R +A+ L F+ C ++R K
Sbjct: 255 HPSSYTKVIHECQQRMVADHLQFLHA---ECHNIIRQEK 290
>sp|Q13617|CUL2_HUMAN Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2
Length = 745
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 36/159 (22%)
Query: 129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIE--- 185
L E+ + +R L+ E ++ + ++ I +R GE+ ++ ++ V++ FV +E
Sbjct: 136 LMEIGELALDMWRKLMVEPLQAILIRMLLREIKNDRGGEDPNQKVIHGVINSFVHVEQYK 195
Query: 186 ------------------DMAAYYSRKASNWILQDS--FDYLVNVGECLKNERERASHYL 225
+ YY ++ASN +LQ+S Y+ V LK+E R YL
Sbjct: 196 KKFPLKFYQEIFESPFLTETGEYYKQEASN-LLQESNCSQYMEKVLGRLKDEEIRCRKYL 254
Query: 226 QPSS---------NRKLANILSFMQKGEFRCRQLLRGHK 255
PSS R +A+ L F+ C ++R K
Sbjct: 255 HPSSYTKVIHECQQRMVADHLQFLHA---ECHNIIRQEK 290
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1
Length = 792
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 119/268 (44%), Gaps = 47/268 (17%)
Query: 9 EEGWDYLERGFTKLKRIFEGLQER-AFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYD 67
E W+ L+ + ++ IF L+++ +F+LE LY V ++C H D ++YD
Sbjct: 93 ENTWEKLQ---SAIRAIF--LKKKISFDLES---LYQAVDNLCL------HKLD-GKLYD 137
Query: 68 KYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM 127
+ ++ +++ + + + + D L + K W + + + L L Y+ +
Sbjct: 138 QIEKECEEHISAALQSLVGQNTDLTVFLSRVEKCWQDFCDQMLMIRSIALTLDRKYV--I 195
Query: 128 ALPELNAF---GISCFR---DLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
P + + G+ FR L E + VK ++++I++ER E ++RTL+ ++L +F
Sbjct: 196 QNPNVRSLWEMGLQLFRKHLSLAPEVEQRTVK-GLLSMIEKERLAEAVNRTLLSHLLKMF 254
Query: 182 VE------------IEDMAAYYSRKASNWILQ-DSFDYLVNVGECLKNERERASHYLQPS 228
+E + +Y+ + ++ Q D +YL +V L E ER Y+
Sbjct: 255 TALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSDVPEYLKHVEGRLHEENERCILYIDAV 314
Query: 229 SNRKLANILSFMQKGEFRCRQLLRGHKL 256
+ + L + RQLL H L
Sbjct: 315 TRKPLITTVE---------RQLLERHIL 333
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1
Length = 802
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 42/245 (17%)
Query: 42 LYTIVYDICCKPARPHHDEDPDQMYDK--YQQILADYMPSKVLPYLREKH---------- 89
L + + I K A E+ +M + + +ILA + +K+ + EKH
Sbjct: 74 LSSAITSINMKQATTLTQEELYKMVENLCFDKILASNLYNKISVQI-EKHITLTIKHLVL 132
Query: 90 ----DEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA--LPELNAFGISCFRDL 143
D L+ + W +H + +FL L Y+ + + + + G+ F +
Sbjct: 133 TMSSDPIIFLKSINSIWKDHTNQMIMIRSIFLYLDRTYVIQNSNTVKSIWDLGLFYFGNN 192
Query: 144 VFEA--MKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE-----------IEDMAAY 190
+ + ++ K D+++ I EREG+EIDR L+ +++ + I++ +
Sbjct: 193 LSQQSNLERKTIDSLLYSIRCEREGDEIDRDLIHSLVKMLSSLNIYTKFEIEFIKETNRF 252
Query: 191 YSRKASNWILQ-DSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQ 249
Y + ++ I + ++ YL V E L E ER YL+ S+ ++L +L RQ
Sbjct: 253 YDMEGNSKINEIETPMYLKYVCERLNQEGERLMRYLEQSTKKQLMAVLD---------RQ 303
Query: 250 LLRGH 254
L+ H
Sbjct: 304 LIERH 308
>sp|Q5AM84|SNU71_CANAL U1 small nuclear ribonucleoprotein component SNU71 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=SNU71 PE=3
SV=1
Length = 614
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 21 KLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILA------ 74
KLK +FEG++E + + + P H DE D +Y++ +A
Sbjct: 321 KLKELFEGIKENSTDSTTRKATNKAAVGVTISPKVSHRDEYEDMNDKEYEEFIAVEERNK 380
Query: 75 --DYMPSKVLPYLREKHDEYDLLRELLKSWANH 105
D K+ + +H EY L LKS N+
Sbjct: 381 LNDQYNKKLKSFQNNQHAEYIKLTNKLKSLQNY 413
>sp|A0B7V2|MTAD_METTP 5-methylthioadenosine/S-adenosylhomocysteine deaminase
OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=mtaD PE=3 SV=1
Length = 413
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIP-------RMALPELNA 134
+P L H L LL+ +A+ L WL PL+A P ++ EL
Sbjct: 50 VPGLVNSHTH--LAMTLLRGYADDMELIPWLQEKIWPLEARLKPSDVRAGVKLGCLELIR 107
Query: 135 FGISCFRDLVF 145
FG++C+ D+ +
Sbjct: 108 FGVTCYNDMYY 118
>sp|Q9CJ85|SECA_LACLA Protein translocase subunit SecA OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=secA PE=3 SV=1
Length = 865
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 99 LKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVA 158
LK N K L + L LP + L EL + +DL+F+ +K + +
Sbjct: 668 LKDEENVKNLLQTLHNTMLPEDG-----IELSELTGLSVQAMKDLIFDKVKARYASQMEK 722
Query: 159 LIDREREGEEIDRTLVKNVLD 179
L D ER+ E R ++ V+D
Sbjct: 723 LSDPERQ-LEFQRAVILRVVD 742
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,894,183
Number of Sequences: 539616
Number of extensions: 4452417
Number of successful extensions: 11517
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11450
Number of HSP's gapped (non-prelim): 52
length of query: 285
length of database: 191,569,459
effective HSP length: 116
effective length of query: 169
effective length of database: 128,974,003
effective search space: 21796606507
effective search space used: 21796606507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)