Query 041127
Match_columns 285
No_of_seqs 131 out of 744
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2166 Cullins [Cell cycle co 100.0 8.6E-36 1.9E-40 288.2 23.4 279 1-284 3-314 (725)
2 KOG2284 E3 ubiquitin ligase, C 100.0 2.4E-35 5.1E-40 260.9 22.9 271 2-284 5-336 (728)
3 PF00888 Cullin: Cullin family 100.0 1.6E-35 3.4E-40 287.6 23.7 243 12-284 1-266 (588)
4 COG5647 Cullin, a subunit of E 100.0 3.3E-33 7.1E-38 261.7 25.4 275 4-284 16-338 (773)
5 KOG2285 E3 ubiquitin ligase, C 100.0 7.4E-29 1.6E-33 221.7 21.6 258 4-274 9-304 (777)
6 KOG2167 Cullins [Cell cycle co 99.9 5.9E-26 1.3E-30 208.8 16.9 220 64-284 1-248 (661)
7 PF08539 HbrB: HbrB-like; Int 97.9 0.00037 8.1E-09 56.2 12.7 133 6-153 3-156 (158)
8 KOG2167 Cullins [Cell cycle co 76.1 83 0.0018 30.9 15.4 90 5-109 65-157 (661)
9 PF05527 DUF758: Domain of unk 42.6 2E+02 0.0043 23.9 9.7 36 204-239 113-149 (186)
10 COG3120 Uncharacterized protei 32.0 1.7E+02 0.0036 22.6 5.5 75 157-235 16-95 (149)
11 PF07516 SecA_SW: SecA Wing an 31.3 3.1E+02 0.0068 22.9 9.5 61 94-157 150-210 (214)
12 smart00340 HALZ homeobox assoc 28.8 65 0.0014 19.7 2.3 20 204-223 7-26 (44)
13 KOG1086 Cytosolic sorting prot 27.9 2.3E+02 0.0051 26.8 6.8 58 8-72 22-87 (594)
14 PRK05097 Ter macrodomain organ 26.5 3.2E+02 0.007 21.5 8.3 59 158-220 17-80 (150)
15 PF08511 COQ9: COQ9; InterPro 26.4 47 0.001 23.4 1.7 23 2-24 51-73 (79)
16 COG4477 EzrA Negative regulato 20.2 8.2E+02 0.018 23.9 9.7 56 196-253 181-244 (570)
17 PRK13107 preprotein translocas 20.2 7.9E+02 0.017 25.8 9.5 61 94-157 767-827 (908)
No 1
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.6e-36 Score=288.20 Aligned_cols=279 Identities=44% Similarity=0.802 Sum_probs=240.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhh
Q 041127 1 MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPS 79 (285)
Q Consensus 1 ~~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~ 79 (285)
|-+...+++..|+.+++++..+..+.++.+...++..+++.+|+++|++|+ ++ +.+ ..+.||+++++.+.+|+..
T Consensus 3 ~~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~--~~~--~~~~lY~~l~~~~~~yl~~ 78 (725)
T KOG2166|consen 3 MAPKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKP--PHD--YSQQLYDKYREVIEEYLIQ 78 (725)
T ss_pred ccccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccC--CCc--chHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999998876544445788889999999999999 53 222 3499999999999999999
Q ss_pred hhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC-CCcchHHHH-HHHHHHHHHH-HHHHHHHHHH
Q 041127 80 KVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM-ALPELNAFG-ISCFRDLVFE-AMKDKVKDAV 156 (285)
Q Consensus 80 ~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~-~~~~i~~lg-l~~f~~~v~~-~i~~~l~~~i 156 (285)
.+.+....+.++. +|..+...|.+|+.++.+++++|+||||+|+++. +..++.+++ +.+|+..++. ++..++++++
T Consensus 79 ~~~~~~~~~~~~~-~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~al 157 (725)
T KOG2166|consen 79 TVLPALREKHDEY-MLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDAL 157 (725)
T ss_pred HHHHHHHhcCcHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHH
Confidence 8877777767777 9999999999999999999999999999999976 556666666 8888888777 6999999999
Q ss_pred HHHHHHHhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHH
Q 041127 157 VALIDREREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNER 218 (285)
Q Consensus 157 l~~I~~~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~ 218 (285)
+.+|..+|.|+.||+..|+++++|+..+ ++|+.||..++++|+..++ ++|+.+|+.++.+|.
T Consensus 158 l~lI~~eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~ 237 (725)
T KOG2166|consen 158 LALIHKEREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEER 237 (725)
T ss_pred HHHHHhhcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999985 9999999999999999888 999999999999999
Q ss_pred HHhcccCCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127 219 ERASHYLQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 219 ~r~~~yl~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
.|+..|++..+..++...++. ++..++||..|+.+++.++|.+||.|++|++.|++ +.+.++++++
T Consensus 238 ~r~~~yl~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~ 314 (725)
T KOG2166|consen 238 ERVTHYLHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVR 314 (725)
T ss_pred HHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 999977666554444444333 56778999999999999999999999999999976 5566666653
No 2
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=260.91 Aligned_cols=271 Identities=20% Similarity=0.326 Sum_probs=240.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127 2 KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKV 81 (285)
Q Consensus 2 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~ 81 (285)
.|+.++|++.|..|.+.|.+|.. .+++++..|..-|+.||.+|..- |.+ .|+.||+..+.++.+|+...+
T Consensus 5 kp~vv~fd~~w~~l~~si~~ii~------l~~i~~~~w~~~fsdvy~icvs~--p~p--l~erly~e~k~~i~~hvrq~~ 74 (728)
T KOG2284|consen 5 KPKVVEFDKVWVQLRPSIIDIIN------LRPITNVQWHHKFSDVYDICVSI--PTP--LSERLYNEVKACIQEHVRQKR 74 (728)
T ss_pred CceeeeHHHHHHHHHHHHHHHHh------ccchhccccccchhhHHHHHHhC--CCc--hhHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999865 34788888999999999999955 344 999999999999999998765
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC------------------CcchHHHHHHHHHHH
Q 041127 82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------------------LPELNAFGISCFRDL 143 (285)
Q Consensus 82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~------------------~~~i~~lgl~~f~~~ 143 (285)
...... +++. +|..|.+.|+.|..+..++..+|.|||+.|++.++ ...|..+|+.+||+.
T Consensus 75 ~~~v~~-~p~~-~l~~yh~~w~~~~~ga~~~~~l~~yln~qfvk~~~~t~~d~~~~y~~~~~~~~~~eig~lal~~w~~~ 152 (728)
T KOG2284|consen 75 QDIVDV-DPDL-LLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDNFAQYAAFLQIPDVKEIGCLALEIWKED 152 (728)
T ss_pred hhhhcC-CHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhcccchhhhhhhcchhcCCcHHHHhHHHHHHHHHH
Confidence 544333 3344 99999999999999999999999999999998872 346788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCC-HHHHHHHHHHHHHH----------------------------------HHHH
Q 041127 144 VFEAMKDKVKDAVVALIDREREGEEID-RTLVKNVLDLFVEI----------------------------------EDMA 188 (285)
Q Consensus 144 v~~~i~~~l~~~il~~I~~~R~g~~i~-~~~l~~~i~~l~~L----------------------------------~~t~ 188 (285)
++.++...|+.-++..|.++|.|+..+ ...+.+++++|+.+ .+|.
T Consensus 153 ~v~~i~~~lv~~ll~~i~ndr~g~~p~i~~~v~gvinsfv~~e~tdfdvvpaegaryka~~~~~~fyqe~fe~p~lt~t~ 232 (728)
T KOG2284|consen 153 LVKTILPQLVKLLLIAIDNDRKGNFPHIANEVSGVINSFVKMEETDFDVVPAEGARYKARESTTAFYQESFEKPLLTDTE 232 (728)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHhhhhhhhcccccccccccchhhccccHHHHHHHhccccccchH
Confidence 999999999999999999999999877 57788999999887 7899
Q ss_pred HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHH
Q 041127 189 AYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSI 261 (285)
Q Consensus 189 ~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ 261 (285)
+||+.+++..+.+.+ ++||++|..++++|+-||..||++|+..+++..|.+ +++++..|..+|.+++..||+.
T Consensus 233 ~yy~~~a~~~l~~~~cs~yme~vi~~l~~ee~r~~kylh~ss~~kvi~~cq~~mi~~h~~~lha~ch~~i~~e~~~d~~n 312 (728)
T KOG2284|consen 233 QYYSALAQKMLTDLSCSEYMEQVIVLLEQEEMRAKKYLHESSVEKVITLCQKVMIKAHKDKLHAVCHDLITNEENKDLRN 312 (728)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999 999999999999999999999999999999988877 6778899999999999999999
Q ss_pred HHHhhcccccchh-hHHHHHHhhc
Q 041127 262 ICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 262 ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
||.|++.+..|+. .+..+.++++
T Consensus 313 my~ll~~i~~gl~~mv~e~~~~v~ 336 (728)
T KOG2284|consen 313 MYRLLKPIQAGLSVMVKEFEEYVK 336 (728)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHH
Confidence 9999999999976 3445555543
No 3
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=100.00 E-value=1.6e-35 Score=287.55 Aligned_cols=243 Identities=33% Similarity=0.610 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhHhhcCCH
Q 041127 12 WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDE 91 (285)
Q Consensus 12 W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~l~~~~~~ 91 (285)
|+.|++||+.|+. ..+++.+||++|+.||++|..+ +|+.||+++++.+.+|+..++ +.+...+++
T Consensus 1 W~~l~~~i~~i~~-------~~~~~~~~~~lY~~vy~l~~~~-------~~~~LY~~l~~~i~~~~~~~~-~~l~~~~~~ 65 (588)
T PF00888_consen 1 WEILEEAIDQIFK-------KSISKLSYMELYTCVYNLCDNK-------YGEQLYDKLKEFISEYLKNII-ESLLSSSDE 65 (588)
T ss_dssp HHHHHHHHHHHHT-------T-GCCSHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHHHHHH-HHHCTTTTC
T ss_pred ChHHHHHHHHHHc-------CCCChhHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHHHHHHHH-HHHHhcChh
Confidence 9999999999873 2467788999999999998854 999999999999999999864 455554555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Q 041127 92 YDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDR 171 (285)
Q Consensus 92 ~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~~i~~~l~~~il~~I~~~R~g~~i~~ 171 (285)
. +|..|...|.+|+.++.+++++|+||||+|+.++ +|++.++.++.+.+.++++.+|.++|.|+.+++
T Consensus 66 ~-~l~~~~~~w~~~~~~~~~i~~if~yLdr~yv~~~-----------~f~~~v~~~~~~~i~~~ll~~I~~~R~g~~~~~ 133 (588)
T PF00888_consen 66 D-LLEEYVQEWEKYKKAIKYISDIFSYLDRNYVKRN-----------LFREQVFKPLKDKIINALLNLIKNEREGEKIDR 133 (588)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTHHHHHTSTTTT-----------HHHHHTTTSHHHHHHHHHHHHHHHHHTTTTSHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 6 9999999999999999999999999999999887 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHH
Q 041127 172 TLVKNVLDLFVEI---------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLAN 235 (285)
Q Consensus 172 ~~l~~~i~~l~~L---------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~ 235 (285)
.+++.+++|++++ +.|.+||+.++ ++..+ .+|+.+|+.++++|.+|+..|++++|.+++.+
T Consensus 134 ~~l~~~~~~~~~l~~~~~y~~~fe~~~l~~t~~yY~~~~---i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~ki~~ 210 (588)
T PF00888_consen 134 SLLKNVIEMFVELGSLEVYEEEFEKPFLEETKEYYKSES---IQENSVSEYLKKVENRLKEEEERVQKYLHPSTKEKIIK 210 (588)
T ss_dssp HHHHHHHHHHHHTTHTHHHHHHTHHHHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHHHHCS-GGGHHHHHH
T ss_pred HHHHHHHHHHhccchHHhhHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Confidence 9999999999743 99999999999 77789 99999999999999999999999999999999
Q ss_pred HHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127 236 ILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 236 ~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
++.+ +..+.+|+..|+++++.++|++||+|+++++++++ +.++++++++
T Consensus 211 ~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~ 266 (588)
T PF00888_consen 211 TLEEVLISDHLDELSSGFRDLLEEDDKEDLKRLYRLFSRVPNGLESLRDAFKEYIK 266 (588)
T ss_dssp HHHHHHTGGGHHHHHTCHHHHHHTT-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Confidence 9988 33457899999999999999999999999977755 6677777653
No 4
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-33 Score=261.69 Aligned_cols=275 Identities=20% Similarity=0.335 Sum_probs=239.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCC--------CChHHHHHHHHHHHH
Q 041127 4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHD--------EDPDQMYDKYQQILA 74 (285)
Q Consensus 4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~--------~~~~~Ly~~l~~~l~ 74 (285)
...||++.|..++.||.+|+..|.. .+...+||++|+.+|+.|+ +.++-..+ ..++.+|+++....+
T Consensus 16 ~~~df~~~W~~i~~~I~~I~~~l~~----~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li~~L~~~~k 91 (773)
T COG5647 16 SEEDFESTWEFIERAIGQIFERLYD----SMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLIQKLVDYAK 91 (773)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999976653 3555679999999999999 53221111 368899999999999
Q ss_pred HHhhhhhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-----CCCcchHHHHHHHHHHHHHHHHH
Q 041127 75 DYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-----MALPELNAFGISCFRDLVFEAMK 149 (285)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~-----~~~~~i~~lgl~~f~~~v~~~i~ 149 (285)
+++...-.. ....+..+||..+++.|++|+.++.+++.+|.||||.|+++ .....+..+++..|+..+|.++.
T Consensus 92 ~~i~~~~~~--~s~~~~~~fl~~~v~~W~~~~~~~~~i~~~f~Ymdr~~~k~~~~~~~~~~E~~slcl~~~~~~~f~~i~ 169 (773)
T COG5647 92 NYIEEYNRG--RSQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIV 169 (773)
T ss_pred HHHHHhccc--ccchhHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHhhh
Confidence 998875432 22222234999999999999999999999999999999992 23557888999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhCC-hh
Q 041127 150 DKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI-----------------------EDMAAYYSRKASNWILQDS-FD 205 (285)
Q Consensus 150 ~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L-----------------------~~t~~yY~~~s~~~i~~~s-~~ 205 (285)
+.+++.+|..+++.|.|+.+|+..+..++.|+..+ +.|.+||..++++.+..++ .+
T Consensus 170 ~~lin~LL~~~~~~r~~~~id~~yi~~~~~~l~~l~~~s~~~k~~l~~y~s~Fep~fL~~t~~fY~~ess~~i~~~~~~e 249 (773)
T COG5647 170 DSLINPLLYYVERYRALQSIDRKYIEDAKDMLESLERPSDYKKENLSYYKSVFEPIFLEETWEFYEMESSEVIELLSVTE 249 (773)
T ss_pred HHHHHHHHHHHHHHHhcCccCchHHHHHHHHHHhhcccchhccccchhhHHhhhHHHHHHhHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999998887 9999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------H---HcchhhHHHHHhcCChhHHHHHHHhhcccccchhh-
Q 041127 206 YLVNVGECLKNERERASHYLQPSSNRKLANILSF------M---QKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAF- 275 (285)
Q Consensus 206 Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l---~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~~- 275 (285)
||++|..++++|..++..|++.++..++.+++++ + ...++||..|++..+.+.|+.||+++++.+.|++.
T Consensus 250 yL~ka~~~~~~E~~~v~~yl~~~~~kpl~~~~edvLi~~hld~l~~~~s~f~~~~d~~~~e~l~~lY~l~se~~~~v~pl 329 (773)
T COG5647 250 YLEKAHKILEREEELVEIYLKVSTKKPLLEVLEDVLITRHLDDLEEQGSGFREALDASNLEKLQVLYRLLSETKYGVQPL 329 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhhccHHHHHhchHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhH
Confidence 9999999999999999999999999999999887 3 33346999999999999999999999999999887
Q ss_pred HHHHHHhhc
Q 041127 276 EETLEKVLK 284 (285)
Q Consensus 276 ~~~~~~~~~ 284 (285)
.+.+++|++
T Consensus 330 ~~~f~~yV~ 338 (773)
T COG5647 330 QEVFERYVK 338 (773)
T ss_pred HHHHHHHHH
Confidence 888999886
No 5
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-29 Score=221.68 Aligned_cols=258 Identities=18% Similarity=0.334 Sum_probs=227.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 041127 4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPSKVL 82 (285)
Q Consensus 4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~ 82 (285)
....|++.|+..++.+-++++ +..++...|+.||..||.+|. ...+| ..+|+.++..|.+++... +
T Consensus 9 ~r~qFee~W~~~rpIVlkLLr------Q~sVt~~~WqDLF~~Vh~vclWddkGp------aKI~d~L~~dI~efi~qA-q 75 (777)
T KOG2285|consen 9 DRDQFEEEWSKARPIVLKLLR------QKSVTPAAWQDLFYHVHKVCLWDDKGP------AKIRDILTRDINEFIHQA-Q 75 (777)
T ss_pred chhhhhhhccccchHHHHHHh------hccCCHHHHHHHHhhheeeeeecCCCc------HHHHHHHHHHHHHHHHHH-H
Confidence 345899999999999999876 347899999999999999999 54223 789999999999999875 3
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--------CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 041127 83 PYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--------ALPELNAFGISCFRDLVFEAMKDKVKD 154 (285)
Q Consensus 83 ~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--------~~~~i~~lgl~~f~~~v~~~i~~~l~~ 154 (285)
....+..++..+|..|..+|.+|.....++.-.|.-|+..-..+. .-.+|..+.+.-|.+.+|..|++++..
T Consensus 76 ~rv~s~q~d~aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~ 155 (777)
T KOG2285|consen 76 KRVRSLQTDGALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGSVKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQV 155 (777)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554455459999999999999999999999999998754443 134789999999999999999999999
Q ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Q 041127 155 AVVALIDREREGEEIDRTLVKNVLDLFVEI--------------------EDMAAYYSRKASNWILQDS-FDYLVNVGEC 213 (285)
Q Consensus 155 ~il~~I~~~R~g~~i~~~~l~~~i~~l~~L--------------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~ 213 (285)
+.+.+++.+|.|+++|.+++-++-.+++.| ++|.+||+..+..++++++ -+||++|+..
T Consensus 156 sAmklVhaER~G~a~DaQlViGvRESyVnL~snaEDkL~iYR~nFE~ayl~~T~efYr~~~~~~lqenGVl~YMkYAD~K 235 (777)
T KOG2285|consen 156 SAMKLVHAERDGNAIDAQLVIGVRESYVNLNSNAEDKLLIYRQNFERAYLEQTTEFYRKICGNLLQENGVLEYMKYADKK 235 (777)
T ss_pred HHHHHHHHHhccchhhhhhhhhhHHhHhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhh
Confidence 999999999999999999999999999998 9999999999999999999 9999999999
Q ss_pred HHHHHHHhcccCCc--chHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh
Q 041127 214 LKNERERASHYLQP--SSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA 274 (285)
Q Consensus 214 l~eE~~r~~~yl~~--~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~ 274 (285)
+++|+.|+..||.+ .|..++++++.. .+.+-..|..||...+++.|++||+|+.|+..|.+
T Consensus 236 L~EEe~RAkRYLE~~~~s~~~lme~~VnaLv~sf~~tIlAEC~~lI~~~etErL~lmfrLmdrv~~Gie 304 (777)
T KOG2285|consen 236 LEEEEQRAKRYLEMNSPSSGKLMEKAVNALVESFEDTILAECSKLIASKETERLQLMFRLMDRVRSGIE 304 (777)
T ss_pred hhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcch
Confidence 99999999999876 677888888776 34556789999999999999999999999999865
No 6
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.9e-26 Score=208.76 Aligned_cols=220 Identities=18% Similarity=0.317 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--CCcchHHHHHHHH
Q 041127 64 QMYDKYQQILADYMPSKVLPYLRE-KHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--ALPELNAFGISCF 140 (285)
Q Consensus 64 ~Ly~~l~~~l~~~~~~~~~~~l~~-~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--~~~~i~~lgl~~f 140 (285)
.||+.|++.+++|++..+. .+.. ..+...+|+++.++|..|+..+..+++||.||||.|+... ..+|+|++|+.+|
T Consensus 1 ~ly~~l~~~~~~~~~~~~~-q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LF 79 (661)
T KOG2167|consen 1 VLYKQLRQICEQHIKAQIE-QLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLF 79 (661)
T ss_pred ChHHHHHHHHHHHHHHHHh-hCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHH
Confidence 3899999999999996654 3333 2232339999999999999999999999999999999873 4789999999999
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-
Q 041127 141 RDLVFE----AMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS- 203 (285)
Q Consensus 141 ~~~v~~----~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s- 203 (285)
|.+++. .+..++.++++..++++|.|+++|+++|++++.|+.++ +.+.++|.+++.+..++..
T Consensus 80 R~~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v 159 (661)
T KOG2167|consen 80 RAHFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEV 159 (661)
T ss_pred HHHhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhccc
Confidence 999997 67888999999999999999999999999999999988 8999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HH-cchhhHHHHHhcCChhHHHHHHHhhcccc-cchhh
Q 041127 204 FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQ-KGEFRCRQLLRGHKLDGHSIICCYSKKSK-NELAF 275 (285)
Q Consensus 204 ~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~-~~~~g~~~ll~~~~~~~L~~ly~L~~~~~-~~~~~ 275 (285)
++||++++.++.+|..|+..|++.+|+.++..++++ |. +...|+..+++.++..++.+||.|++++. +.+..
T Consensus 160 ~eYl~h~e~~l~~E~~~~i~~~D~st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~q~~d~~rly~L~~r~~~g~l~l 239 (661)
T KOG2167|consen 160 PEYLEHVEGRLEEENDRVIEYFDSSTKKPLIATVERCLLSRHLDLILTKGLDSLVDMRQTSDLTRLYMLFSRVQGGQLSL 239 (661)
T ss_pred HHHHHhhhhcccchHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcchHHhhhhhhccchHhHHHHHHHHhcchHHH
Confidence 999999999999999999999999996667777776 33 35689999999999999999999999998 55779
Q ss_pred HHHHHHhhc
Q 041127 276 EETLEKVLK 284 (285)
Q Consensus 276 ~~~~~~~~~ 284 (285)
+..|++++|
T Consensus 240 ~qq~sdylk 248 (661)
T KOG2167|consen 240 LQQWSDYLK 248 (661)
T ss_pred HHHHHHHHh
Confidence 999999987
No 7
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=97.91 E-value=0.00037 Score=56.19 Aligned_cols=133 Identities=22% Similarity=0.333 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhH---hhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 041127 6 SDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYD---ICCKPARPHHDEDPDQMYDKYQQILADYMPSKVL 82 (285)
Q Consensus 6 ~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~---lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~ 82 (285)
...++.|+.+..++-.+|+ |... ..+ -+.+-..|-. .|... . ....+-+.+++.+..-+... .
T Consensus 3 ~~~~~~W~~~~~~vl~lF~---g~~l-~~~---iEdlN~lv~~~i~~~~~~----~--~~~~~~~dl~elL~tg~~~L-~ 68 (158)
T PF08539_consen 3 MSSDDAWNSLCAKVLPLFQ---GERL-RLP---IEDLNELVRFHIKLCIQS----F--PPSYFLEDLEELLTTGMYIL-E 68 (158)
T ss_pred CchhhhHHHHHHHHHHHHc---CCCC-CcC---HHHHHHHHHHHHHHhhcc----c--chHHHHHHHHHHHHHHHHHH-H
Confidence 4578999999999999775 4322 233 5666666644 44421 0 33566677777777766654 4
Q ss_pred hhHhhcCCHHHHHHHHHHHHHHH-HHHHHHHhhcccccccccccc-----------------CCCcchHHHHHHHHHHHH
Q 041127 83 PYLREKHDEYDLLRELLKSWANH-KFLAKWLSRVFLPLQAGYIPR-----------------MALPELNAFGISCFRDLV 144 (285)
Q Consensus 83 ~~l~~~~~~~~~L~~~~~~W~~~-~~~~~~l~~if~YLdr~y~~~-----------------~~~~~i~~lgl~~f~~~v 144 (285)
..+...+++. +|..+...|.-| +.-+-++..+|..|++.+-.. ....+|..+++..||+.|
T Consensus 69 ~~l~~~~~~~-~l~rL~eiW~~Ff~~VlP~lqavFlPLq~~f~~~~~~~~~~~~~~~~~~~~~~~l~Vr~l~L~~FRD~I 147 (158)
T PF08539_consen 69 NQLNEVPDNR-LLKRLVEIWQFFFTQVLPYLQAVFLPLQLEFQGNGKYMNPSEAREFWGNKAGSELDVRRLLLIAFRDSI 147 (158)
T ss_pred HHHhhcchhH-HHHHHHHHHHHHhcchHHHHHHHHhhhHHhhcccCccCChhhhhccccccCCCCCcHHHHHHHHHHHHh
Confidence 4565556666 999999999974 777789999999999543221 234789999999999999
Q ss_pred HHHHHHHHH
Q 041127 145 FEAMKDKVK 153 (285)
Q Consensus 145 ~~~i~~~l~ 153 (285)
+-|..+++.
T Consensus 148 vLP~y~~l~ 156 (158)
T PF08539_consen 148 VLPYYQRLK 156 (158)
T ss_pred hhcchHhhh
Confidence 987776654
No 8
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=76.05 E-value=83 Score=30.89 Aligned_cols=90 Identities=3% Similarity=-0.097 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhhhhh-
Q 041127 5 ASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPSKVL- 82 (285)
Q Consensus 5 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~- 82 (285)
+.+....|....+++.+.+- ++ +. + .-......+|+..-. .. .|+.++..+-..+...+.....
T Consensus 65 np~v~siWem~l~LFR~~f~--~~-~~-~---~vqs~~~N~ll~s~er~r-------sgeAvdrslLrsll~MLsd~~iY 130 (661)
T KOG2167|consen 65 NPYVLSIWEMGLQLFRAHFS--QE-PQ-P---FVQSKTFNGLLKSIERER-------SGEAVDRSLLRSLLKMLSDLQIY 130 (661)
T ss_pred CCCcCCHHHhhHHHHHHHhh--cc-CC-c---hhhccchHHHHHHHHHHh-------hcchhhHHHHHHHHHHHHHHHhh
Confidence 55667788888888888643 21 11 1 113445566666544 32 4455664444444444332211
Q ss_pred -hhHhhcCCHHHHHHHHHHHHHHHHHHH
Q 041127 83 -PYLREKHDEYDLLRELLKSWANHKFLA 109 (285)
Q Consensus 83 -~~l~~~~~~~~~L~~~~~~W~~~~~~~ 109 (285)
+.....--+. |...|..+|.++...+
T Consensus 131 ~esF~~~fls~-f~~lY~aE~~d~~Qel 157 (661)
T KOG2167|consen 131 KESFELTFLSL-FRELYAAEGQDKRQEL 157 (661)
T ss_pred hhhhHHHHHHH-HHHHHHHHhcchhhhc
Confidence 1111111123 7778888888876655
No 9
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=42.56 E-value=2e+02 Score=23.91 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHH-HhcccCCcchHHHHHHHHHH
Q 041127 204 FDYLVNVGECLKNERE-RASHYLQPSSNRKLANILSF 239 (285)
Q Consensus 204 ~~Yl~~~~~~l~eE~~-r~~~yl~~~t~~~l~~~l~~ 239 (285)
..||..+..-.++... .+..+|.+.|..++-.+..-
T Consensus 113 ~~~L~~~L~ec~~~L~~lv~~HLT~KS~~Ri~~vF~~ 149 (186)
T PF05527_consen 113 RNYLSKLLKECRDLLHQLVEPHLTPKSHGRIDHVFNF 149 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHh
Confidence 6688888777777766 44778988888888777654
No 10
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.98 E-value=1.7e+02 Score=22.60 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHH
Q 041127 157 VALIDREREGEEID----RTLVKNVLDLFVEIEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNR 231 (285)
Q Consensus 157 l~~I~~~R~g~~i~----~~~l~~~i~~l~~L~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~ 231 (285)
.-+|.+.|+|+.|. .+.....++-|..+ +.+-...+.||..+- ++-+.+....|..-..|.=.-=+..|++
T Consensus 16 ~YLikKhreGE~iTRyie~S~~e~av~~Ll~~----eneP~~v~~WI~~Hmsp~L~~klkQaIRArRKRhFNaE~qhTrK 91 (149)
T COG3120 16 KYLIKKHREGELITRYIEASAAEEAVQQLLSL----ENEPVKVNEWIDAHMSPELVNKLKQAIRARRKRHFNAEHQHTRK 91 (149)
T ss_pred HHHHHHhcccchhHHHHHHhHHHHHHHHHHHh----cCCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccHhhhhhhh
Confidence 35789999999864 45566666666554 223344566888876 8877777777665444432222334655
Q ss_pred HHHH
Q 041127 232 KLAN 235 (285)
Q Consensus 232 ~l~~ 235 (285)
+-++
T Consensus 92 KSID 95 (149)
T COG3120 92 KSID 95 (149)
T ss_pred cccc
Confidence 5444
No 11
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=31.33 E-value=3.1e+02 Score=22.90 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041127 94 LLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVV 157 (285)
Q Consensus 94 ~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~~i~~~l~~~il 157 (285)
+|..+-..|.+|-..|..|+..-. -|.|-++.+...-..-|..+|.+ +...+...++..++
T Consensus 150 lL~~ID~~W~~HL~~m~~Lr~~I~--lR~y~QkdPl~EYk~Ea~~lF~~-m~~~i~~~i~~~l~ 210 (214)
T PF07516_consen 150 LLKAIDQNWKDHLDNMDQLREGIG--LRSYGQKDPLVEYKREAFELFEE-MLENIREDIIRNLF 210 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT--CTTSSSSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH--HHhHccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 899999999999999999986642 24555544322223344455532 23344444444443
No 12
>smart00340 HALZ homeobox associated leucin zipper.
Probab=28.85 E-value=65 Score=19.74 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 041127 204 FDYLVNVGECLKNERERASH 223 (285)
Q Consensus 204 ~~Yl~~~~~~l~eE~~r~~~ 223 (285)
-+||+.+.+.|.+|..|.+.
T Consensus 7 Ce~LKrcce~LteeNrRL~k 26 (44)
T smart00340 7 CELLKRCCESLTEENRRLQK 26 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988754
No 13
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=2.3e+02 Score=26.84 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh------c-cCCCHHHHHHHHH-HHhHhhccCCCCCCCCChHHHHHHHHHH
Q 041127 8 SEEGWDYLERGFTKLKRIFEGLQ------E-RAFNLEDYMMLYT-IVYDICCKPARPHHDEDPDQMYDKYQQI 72 (285)
Q Consensus 8 fe~~W~~l~~ai~~i~~~l~~~~------~-~~~s~~~~~~lY~-~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~ 72 (285)
-++.|+.|...++.|.+-..|-. . .--|..+|+.+|. +|-.+|.++ .|++.++.+..+
T Consensus 22 ~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkn-------cGekfH~evgkf 87 (594)
T KOG1086|consen 22 DEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKN-------CGEKFHEEVGKF 87 (594)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHH
Confidence 47899999999999877544410 0 0125678999998 688889965 677777776543
No 14
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=26.49 E-value=3.2e+02 Score=21.48 Aligned_cols=59 Identities=22% Similarity=0.431 Sum_probs=38.6
Q ss_pred HHHHHHhcCCcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHH
Q 041127 158 ALIDREREGEEI----DRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERER 220 (285)
Q Consensus 158 ~~I~~~R~g~~i----~~~~l~~~i~~l~~L~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r 220 (285)
-+|.+.|+|++| +.+.....++.|..++ .+-.....||..+= ++-..+....|..=..|
T Consensus 17 YLvkKhreGE~ITry~e~S~~~~aV~~L~~le----~~P~~v~~WI~~hm~p~l~nklkQaIRArRKR 80 (150)
T PRK05097 17 YLVKKHREGELITRYIEASAAQEAVDELLKLE----NEPVKVLEWIDKHMNPELVNRMKQTIRARRKR 80 (150)
T ss_pred HHHHHhccccchHHHHHhhHHHHHHHHHHHhc----cCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 468899999976 4566777777776652 23345566888776 77666555555543333
No 15
>PF08511 COQ9: COQ9; InterPro: IPR013718 COQ9 is an enzyme that is required for the biosynthesis of coenzyme Q []. It may either catalyse a reaction in the coenzyme Q biosynthetic pathway or have a regulatory role. ; PDB: 3NI7_B.
Probab=26.36 E-value=47 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 041127 2 KRKASDSEEGWDYLERGFTKLKR 24 (285)
Q Consensus 2 ~~~~~~fe~~W~~l~~ai~~i~~ 24 (285)
.+.+.+|+++|.+|+.-|+.+.+
T Consensus 51 ~d~S~~~~~T~~Fl~rri~~v~~ 73 (79)
T PF08511_consen 51 QDKSPDFEDTWAFLDRRIDDVMQ 73 (79)
T ss_dssp T--SGGGHHHHHHHHHHHHHH--
T ss_pred hCCCCCHHHHHHHHHHHHHhhhc
Confidence 35677999999999999998764
No 16
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=20.20 E-value=8.2e+02 Score=23.94 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHhhCC-hhHHHHHHHHHHHHHH--HhcccCCcchHHHHHHHHHH-----HHcchhhHHHHHhc
Q 041127 196 SNWILQDS-FDYLVNVGECLKNERE--RASHYLQPSSNRKLANILSF-----MQKGEFRCRQLLRG 253 (285)
Q Consensus 196 ~~~i~~~s-~~Yl~~~~~~l~eE~~--r~~~yl~~~t~~~l~~~l~~-----l~~~~~g~~~ll~~ 253 (285)
++|-.-.+ .+|+...+-....|+. +.+.|+. -.|.+...+.+ +..+..|++.|...
T Consensus 181 ~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e--~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~ 244 (570)
T COG4477 181 SQFVELTSSGDYIEAREVLEEAEEHMIALRSIME--RIPSLLAELQTELPGQLQDLKAGYRDMKEE 244 (570)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhchHHHHHHHHHHHHHHHc
Confidence 33544556 8888766554444443 4455554 24555555555 56667787777754
No 17
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=20.19 E-value=7.9e+02 Score=25.85 Aligned_cols=61 Identities=21% Similarity=0.324 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041127 94 LLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVV 157 (285)
Q Consensus 94 ~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~~i~~~l~~~il 157 (285)
+|..+-..|.+|-..|..|+..-. .|.|-++.+...-..-|+.+|..- ...+...++..++
T Consensus 767 ~L~~iD~~W~eHL~~md~Lr~~I~--lr~y~QkdPl~eYk~Ea~~lF~~m-~~~i~~~~~~~l~ 827 (908)
T PRK13107 767 MLQTLDGLWKEHLAAMDHLRQGIH--LRGYAQKNPKQEYKRESFELFQQL-LETLKHDVISVLS 827 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hhhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 899999999999999998875432 355555544333445566666533 3344544444443
Done!