Query 041127
Match_columns 285
No_of_seqs 131 out of 744
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 06:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 3.1E-55 1.1E-59 400.5 26.7 268 2-284 7-305 (364)
2 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.1E-54 7E-59 393.7 29.5 267 4-284 6-296 (354)
3 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 2.2E-54 7.7E-59 399.9 26.4 265 5-284 27-322 (410)
4 2wzk_A Cullin-5, CUL-5; UBL co 100.0 4.4E-54 1.5E-58 396.2 27.3 269 3-284 10-319 (391)
5 1ldj_A Cullin homolog 1, CUL-1 100.0 2.7E-49 9.1E-54 390.8 20.7 267 8-284 1-329 (760)
6 2hye_C Cullin-4A, CUL-4A; beta 100.0 2.4E-47 8.3E-52 376.8 24.4 264 5-284 56-345 (759)
7 3f4m_A Tumor necrosis factor, 32.8 1.7E+02 0.0058 22.6 9.9 36 204-239 90-126 (161)
8 3omy_A Protein TRAM; DNA bindi 27.9 44 0.0015 20.6 2.4 35 149-184 9-43 (52)
9 1dp3_A TRAM protein; helix-loo 24.7 23 0.00079 22.1 0.8 35 150-184 9-44 (55)
10 2kmf_A Photosystem II 11 kDa p 18.7 2.5E+02 0.0086 20.3 5.5 69 147-225 42-111 (115)
No 1
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=3.1e-55 Score=400.47 Aligned_cols=268 Identities=18% Similarity=0.378 Sum_probs=243.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127 2 KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKV 81 (285)
Q Consensus 2 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~ 81 (285)
.....+|+++|+.|++||++|++ +. +.+. +||++|+.||++|+.. .|+.||+++++.+.+|+...+
T Consensus 7 ~~~~~~~~~~W~~L~~ai~~I~~---~~-~~~~---s~e~LY~~vy~lc~~k-------~g~~LY~~l~~~~~~~l~~~v 72 (364)
T 4eoz_B 7 TMDEKYVNSIWDLLKNAIQEIQR---KN-NSGL---SFEELYRNAYTMVLHK-------HGEKLYTGLREVVTEHLINKV 72 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT---TC-GGGC---CHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTH
T ss_pred CCChhhHHHHHHHHHHHHHHHHh---cC-CCCC---CHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999875 22 2234 4999999999999943 899999999999999999555
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 041127 82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFE--AMKDKVKDAVVAL 159 (285)
Q Consensus 82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~ 159 (285)
.+.+....++. ||+.+.++|++|+.++.+|+++|+||||+|+++++.++|+++|+.+||++||. +++++++++++.+
T Consensus 73 ~~~~~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~l 151 (364)
T 4eoz_B 73 REDVLNSLNNN-FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDM 151 (364)
T ss_dssp HHHHHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 66776666666 99999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred HHHHhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHh
Q 041127 160 IDREREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERA 221 (285)
Q Consensus 160 I~~~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~ 221 (285)
|+++|+|+.||+++|+++++||++| ++|.+||+++|++|+++++ ++||++|+.+|++|.+||
T Consensus 152 I~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~ 231 (364)
T 4eoz_B 152 IARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERV 231 (364)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 9999999999999999999 999999999999999999
Q ss_pred cccCCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127 222 SHYLQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 222 ~~yl~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
..||+++|.++|.+++++ +.+.++||..||++++.++|++||+|++|+++|++ +.++++++|+
T Consensus 232 ~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~ 305 (364)
T 4eoz_B 232 MHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR 305 (364)
T ss_dssp HHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999998 23345899999999999999999999999999974 8888888874
No 2
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.1e-54 Score=393.69 Aligned_cols=267 Identities=20% Similarity=0.419 Sum_probs=240.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 041127 4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLP 83 (285)
Q Consensus 4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~ 83 (285)
...+|+++|+.|++||++|++ +. +.+. +||++|+.||++|+.. +|++||+++++.+.+|+...+.+
T Consensus 6 ~~~~~~~~W~~L~~ai~~I~~---~~-~~~~---s~eeLY~~vy~lc~~~-------~g~~LY~~l~~~~~~~l~~~~~~ 71 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAIQN---ST-SIKY---NLEELYQAVENLCSYK-------ISANLYKQLRQICEDHIKAQIHQ 71 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHHHT---TC-CCCS---CHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHh---CC-CCCC---CHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999875 22 2233 5999999999999942 89999999999999999987664
Q ss_pred hHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC-CcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 041127 84 YLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA-LPELNAFGISCFRDLVFE--AMKDKVKDAVVALI 160 (285)
Q Consensus 84 ~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~-~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~I 160 (285)
......++.+||+.+.++|++|+.++.+|+++|+||||+|+++++ .++|+++|+.+||++||. +++++++++++.+|
T Consensus 72 ~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI 151 (354)
T 4a64_A 72 FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLI 151 (354)
T ss_dssp GGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 433333333499999999999999999999999999999999886 799999999999999997 79999999999999
Q ss_pred HHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCc
Q 041127 161 DREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQP 227 (285)
Q Consensus 161 ~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~ 227 (285)
+++|+|+.||+++|+++++||.+| ++|++||+++|++|+++++ ++||++|+.+|++|.+||..||++
T Consensus 152 ~~eR~Ge~id~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~ 231 (354)
T 4a64_A 152 ERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQ 231 (354)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999988 9999999999999999999 999999999999999999999999
Q ss_pred chHHHHHHHHHH------HH-cchhhHHHHHhcCChhHHHHHHHhhcccccch-hhHHHHHHhhc
Q 041127 228 SSNRKLANILSF------MQ-KGEFRCRQLLRGHKLDGHSIICCYSKKSKNEL-AFEETLEKVLK 284 (285)
Q Consensus 228 ~t~~~l~~~l~~------l~-~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~-~~~~~~~~~~~ 284 (285)
+|.++|.+++++ +. .+++||..||++++.++|++||+|++|+++|+ .+.++++++|+
T Consensus 232 ~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~ 296 (354)
T 4a64_A 232 TTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIK 296 (354)
T ss_dssp GGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 999999999998 22 24689999999999999999999999999998 58888998874
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-54 Score=399.94 Aligned_cols=265 Identities=18% Similarity=0.377 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 041127 5 ASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPY 84 (285)
Q Consensus 5 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~ 84 (285)
..+|+++|+.|++||++|+. +. ..+ .+||+||+.||++|+.. .|++||+++++.+.+|+...+.+.
T Consensus 27 ~~~~~~~W~~L~~ai~~I~~---~~-~~~---~s~eeLY~~vy~lc~~k-------~g~~LY~~l~~~~~~~l~~~v~~~ 92 (410)
T 4ap2_B 27 EKYVNSIWDLLKNAIQEIQR---KN-NSG---LSFEELYRNAYTMVLHK-------HGEKLYTGLREVVTEHLINKVRED 92 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TC-CTT---CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh---cC-CCC---CCHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999875 22 223 45999999999999943 899999999999999999555667
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 041127 85 LREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFE--AMKDKVKDAVVALIDR 162 (285)
Q Consensus 85 l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~I~~ 162 (285)
+....++. ||+.+.++|++|+.++.+|+++|+||||+|+++++.++|+++|+.+||++||. +++++++++++.+|++
T Consensus 93 l~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~ 171 (410)
T 4ap2_B 93 VLNSLNNN-FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIAR 171 (410)
T ss_dssp HHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHH-HHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 76666666 99999999999999999999999999999999999999999999999999997 8999999999999999
Q ss_pred HhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhccc
Q 041127 163 EREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHY 224 (285)
Q Consensus 163 ~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~y 224 (285)
+|+|+.||+++|+++++||++| ++|.+||+.+|++|+++++ ++||++|+.+|++|.+||..|
T Consensus 172 eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~y 251 (410)
T 4ap2_B 172 ERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHC 251 (410)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887 9999999999999999999 999999999999999999999
Q ss_pred CCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127 225 LQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 225 l~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
|+++|.++|.+++++ +.+.++||..||++++.++|++||+||+|+++|++ +.++|+++|+
T Consensus 252 L~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~ 322 (410)
T 4ap2_B 252 LDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR 322 (410)
T ss_dssp SCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999988 23345899999999999999999999999999974 8888888874
No 4
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=4.4e-54 Score=396.24 Aligned_cols=269 Identities=18% Similarity=0.359 Sum_probs=240.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127 3 RKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPSKV 81 (285)
Q Consensus 3 ~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~ 81 (285)
++..+|+++|+.|++||++|+. ..+++..+||++|+.||++|+ ++ . .|+.||+++++.+++|+..++
T Consensus 10 ~~~~~~e~~W~~L~~ai~~I~~------~~~~~~~s~e~LY~~vy~lc~~~~----~--~~~~LY~~l~~~~~~~l~~~~ 77 (391)
T 2wzk_A 10 KGSLQFEDKWDFMHPIVLKLLR------QESVTKQQWFDLFSDVHAVCLWDD----K--GSSKIHQALKEDILEFIKQAQ 77 (391)
T ss_dssp --CCSHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHCT----T--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHh------CCCCChHHHHHHHHHHHHHHhcCc----c--chHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999876 236888999999999999999 43 2 889999999999999999876
Q ss_pred hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--------CCcchHHHHHHHHHHHHHHHHHHHHH
Q 041127 82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--------ALPELNAFGISCFRDLVFEAMKDKVK 153 (285)
Q Consensus 82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--------~~~~i~~lgl~~f~~~v~~~i~~~l~ 153 (285)
.+.....+++. ||+.|..+|.+|+.++.+|+++|+||||+|+.++ +.++|+++|+.+||++||.+++++++
T Consensus 78 ~~~~~~~~~e~-~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~ 156 (391)
T 2wzk_A 78 ARVLSHQDDTA-LLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQ 156 (391)
T ss_dssp HHHHTCCSHHH-HHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHhccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333223345 9999999999999999999999999999999653 35699999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Q 041127 154 DAVVALIDREREGEEIDRTLVKNVLDLFVEI--------------------EDMAAYYSRKASNWILQDS-FDYLVNVGE 212 (285)
Q Consensus 154 ~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L--------------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~ 212 (285)
++++.+|+++|+|+.+|+++|+++++||++| ++|.+||+++|++|+++++ ++||++|+.
T Consensus 157 ~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~ 236 (391)
T 2wzk_A 157 DSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADA 236 (391)
T ss_dssp HHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999853 9999999999999999999 999999999
Q ss_pred HHHHHHHHhcccCC----cchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHH
Q 041127 213 CLKNERERASHYLQ----PSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEK 281 (285)
Q Consensus 213 ~l~eE~~r~~~yl~----~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~ 281 (285)
+|++|.+||..||+ ++|.++|.++|++ +..+.+||..||++++.+||++||+||+|+++|++ +..++++
T Consensus 237 rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 237 KLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence 99999999999999 9999999999998 34445689999999999999999999999999865 7778888
Q ss_pred hhc
Q 041127 282 VLK 284 (285)
Q Consensus 282 ~~~ 284 (285)
+|+
T Consensus 317 ~I~ 319 (391)
T 2wzk_A 317 HII 319 (391)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 5
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.7e-49 Score=390.80 Aligned_cols=267 Identities=23% Similarity=0.440 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCC---------------------CCCCCCChHHH
Q 041127 8 SEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPA---------------------RPHHDEDPDQM 65 (285)
Q Consensus 8 fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~---------------------~~~~~~~~~~L 65 (285)
|+++|+.|++||++|+. + .+++..+||++|+.||++|+ ++. +|+. +|+.|
T Consensus 1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~L 72 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQF--VGLEL 72 (760)
T ss_dssp CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC------------------------------TTHH
T ss_pred ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcch--hHHHH
Confidence 68999999999999875 1 36899999999999999999 511 1334 78999
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC------CcchHHHHHHH
Q 041127 66 YDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------LPELNAFGISC 139 (285)
Q Consensus 66 y~~l~~~l~~~~~~~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~------~~~i~~lgl~~ 139 (285)
|+++++++.+|+..++. .+....++. ||..|..+|.+|+.++.+|+++|+||||+|+++++ .++|+++|+.+
T Consensus 73 Y~~l~~~l~~~l~~~~~-~~~~~~~e~-lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~ 150 (760)
T 1ldj_A 73 YKRLKEFLKNYLTNLLK-DGEDLMDES-VLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVT 150 (760)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCSCTTTT-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-HHhhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHH
Confidence 99999999999998765 334445666 99999999999999999999999999999999975 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHH--------------H------------HHHHHHHHH
Q 041127 140 FRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--------------I------------EDMAAYYSR 193 (285)
Q Consensus 140 f~~~v~~~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~--------------L------------~~t~~yY~~ 193 (285)
||++||.+++++++++++.+|+++|+|+.||+++|+++++||++ + ++|..||+.
T Consensus 151 fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~ 230 (760)
T 1ldj_A 151 WRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTR 230 (760)
T ss_dssp THHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986 2 899999999
Q ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhh
Q 041127 194 KASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYS 266 (285)
Q Consensus 194 ~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~ 266 (285)
+|++|+++++ ++||++|+.+|++|.+||..||+++|.++|.++|++ +..+.+||..||++++.++|++||+||
T Consensus 231 es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~L~ 310 (760)
T 1ldj_A 231 ESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLV 310 (760)
T ss_dssp HHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999999999999998 344568999999999999999999999
Q ss_pred cccccchh-hHHHHHHhhc
Q 041127 267 KKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 267 ~~~~~~~~-~~~~~~~~~~ 284 (285)
+|+++|++ +..+++++|+
T Consensus 311 ~rv~~gl~~l~~~~~~~i~ 329 (760)
T 1ldj_A 311 SRIQDGLGELKKLLETHIH 329 (760)
T ss_dssp HHSTTCHHHHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHH
Confidence 99999866 6667777664
No 6
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=2.4e-47 Score=376.76 Aligned_cols=264 Identities=20% Similarity=0.409 Sum_probs=236.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 041127 5 ASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPY 84 (285)
Q Consensus 5 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~ 84 (285)
..+|+++|+.|++||+.|+. ++ ..+.+ ||++|+.||++|+.. .|+.||+++++.+.+|+...+. .
T Consensus 56 ~~~~e~~W~~L~~ai~~I~~---~~-~~~~s---~e~LY~~vy~lc~~k-------~~~~LY~~l~~~~~~~l~~~~~-~ 120 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRAVQS---ST-SIRYN---LEELYQAVENLCSHK-------VSPMLYKQLRQACEDHVQAQIL-P 120 (759)
T ss_dssp CCTTTTHHHHHHHHHHTTST---TC-CCSSC---HHHHHHHHHHHCCTT-------THHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHHHHHHh---CC-CCCCC---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHH-H
Confidence 35679999999999999764 32 22344 999999999999943 8899999999999999998654 4
Q ss_pred Hhh-cCC-HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC-CcchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 041127 85 LRE-KHD-EYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA-LPELNAFGISCFRDLVFEA--MKDKVKDAVVAL 159 (285)
Q Consensus 85 l~~-~~~-~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~-~~~i~~lgl~~f~~~v~~~--i~~~l~~~il~~ 159 (285)
+.. ..+ +. ||..|..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++||.+ +.++++++++.+
T Consensus 121 l~~~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l 199 (759)
T 2hye_C 121 FREDSLDSVL-FLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL 199 (759)
T ss_dssp HTSCCCCTTH-HHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence 433 223 35 99999999999999999999999999999999986 7899999999999999996 999999999999
Q ss_pred HHHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCC
Q 041127 160 IDREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQ 226 (285)
Q Consensus 160 I~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~ 226 (285)
|+++|+|+.+|+++++++++||++| ++|.+||+.+|++|+++++ ++||++|+.+|++|.+||..||+
T Consensus 200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~ 279 (759)
T 2hye_C 200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279 (759)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998 9999999999999999999 99999999999999999999999
Q ss_pred cchHHHHHHHHHH-H-----Hc-chhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127 227 PSSNRKLANILSF-M-----QK-GEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK 284 (285)
Q Consensus 227 ~~t~~~l~~~l~~-l-----~~-~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~ 284 (285)
++|.++|.++|++ | .. ..+||..||++++.++|++||+|++|+++|++ +..+|+++|+
T Consensus 280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~ 345 (759)
T 2hye_C 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIK 345 (759)
T ss_dssp TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence 9999999999998 2 22 23599999999999999999999999988866 7778887774
No 7
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=32.76 E-value=1.7e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHH-HhcccCCcchHHHHHHHHHH
Q 041127 204 FDYLVNVGECLKNERE-RASHYLQPSSNRKLANILSF 239 (285)
Q Consensus 204 ~~Yl~~~~~~l~eE~~-r~~~yl~~~t~~~l~~~l~~ 239 (285)
..||..+..--++... .++.+|.+.|..++-.+..-
T Consensus 90 ~~~L~~~L~ec~~lL~~lv~~HLT~KS~~Ri~~vF~~ 126 (161)
T 3f4m_A 90 AAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDH 126 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 6688887776666655 45778998888888887654
No 8
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=27.87 E-value=44 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH
Q 041127 149 KDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI 184 (285)
Q Consensus 149 ~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L 184 (285)
++.+.+.|-.++++.|...+-|- -+.++..||.+|
T Consensus 9 s~~v~~~I~~iVe~r~qeGA~dv-s~Ssv~smLleL 43 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGIEEA-SLSNVSSMLLEL 43 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTC-CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccc-cHHHHHHHHHHh
Confidence 45566777788888888766222 256778888776
No 9
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=24.74 E-value=23 Score=22.11 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCcCCHHH-HHHHHHHHHHH
Q 041127 150 DKVKDAVVALIDREREGEEIDRTL-VKNVLDLFVEI 184 (285)
Q Consensus 150 ~~l~~~il~~I~~~R~g~~i~~~~-l~~~i~~l~~L 184 (285)
+++.+.|-++++..|...+-+.+. +.++..||.+|
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleL 44 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLEL 44 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence 445667777888888765422211 56778888876
No 10
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=18.74 E-value=2.5e+02 Score=20.27 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccC
Q 041127 147 AMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYL 225 (285)
Q Consensus 147 ~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl 225 (285)
.....+...|-+++.+.|.+..+.. ..++..|...|.+...||..-+ .-+ |+ ..-.+|.+|.+.++..|
T Consensus 42 ~a~~~ar~~ind~vsrYRr~~~v~g--~~Sf~tm~tAlNaLAGHY~s~g-----~~PlPe---k~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 42 EVQDTARGQINDYISRYRRKGDAGG--LKSFTTMQTALNSLAGYYTSYG-----ARPIPE---KLKKRLQLEFTQAERSI 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCSSS--CHHHHHHHHHHHHHHHHHHHHS-----SCCCCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccc--cchHHHHHHHHHHHHHHHhhcC-----CCCCCH---HHHHHHHHHHHHHHHHH
Confidence 4567777888888999997754442 3567777777788889999843 233 43 24457777777766543
Done!