Query 041129
Match_columns 106
No_of_seqs 139 out of 456
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04706 PLA2_plant PLA2_plant: 99.9 4.3E-27 9.3E-32 169.8 5.0 74 33-106 1-77 (117)
2 KOG4087 Phospholipase A2 [Lipi 99.8 3.3E-19 7.1E-24 132.9 2.6 68 35-106 23-121 (144)
3 cd00618 PLA2_like PLA2_like: P 99.7 1.5E-18 3.2E-23 114.1 3.4 54 53-106 1-82 (83)
4 cd00125 PLA2c PLA2c: Phospholi 99.7 2E-18 4.4E-23 123.5 1.6 61 42-106 10-100 (115)
5 cd04707 otoconin_90 otoconin_9 99.7 2.5E-17 5.4E-22 118.6 1.6 43 43-89 8-50 (117)
6 smart00085 PA2c Phospholipase 99.6 1.9E-17 4.1E-22 118.0 -0.2 59 43-105 11-79 (117)
7 PF00068 Phospholip_A2_1: Phos 99.5 7.1E-15 1.5E-19 104.1 2.5 51 51-105 20-99 (116)
8 cd04704 PLA2_bee_venom_like PL 99.3 1.8E-12 3.8E-17 90.5 2.9 50 57-106 7-73 (97)
9 PF05826 Phospholip_A2_2: Phos 99.1 2.6E-11 5.7E-16 84.6 2.0 48 57-106 6-72 (99)
10 cd04705 PLA2_group_III_like PL 98.4 1E-07 2.2E-12 67.5 1.6 34 73-106 32-80 (100)
11 PF06951 PLA2G12: Group XII se 98.0 8.3E-06 1.8E-10 63.1 4.4 72 35-106 54-129 (184)
12 PF08398 Parvo_coat_N: Parvovi 97.1 0.00034 7.3E-09 46.5 2.2 48 57-105 5-59 (64)
13 PF10690 Myticin-prepro: Mytic 82.5 0.097 2.1E-06 37.4 -3.1 47 13-59 3-53 (98)
14 PF07172 GRP: Glycine rich pro 62.0 9.4 0.0002 26.5 2.8 18 12-29 8-25 (95)
15 PF07327 Neuroparsin: Neuropar 56.4 18 0.00039 26.1 3.5 40 17-62 11-55 (103)
16 PF09056 Phospholip_A2_3: Prok 50.4 6.9 0.00015 28.2 0.6 30 75-104 45-81 (111)
17 PF09680 Tiny_TM_bacill: Prote 45.1 21 0.00045 19.7 1.9 14 16-29 8-21 (24)
18 PF10868 DUF2667: Protein of u 45.1 6.6 0.00014 27.6 -0.2 13 52-64 56-68 (90)
19 PF10916 DUF2712: Protein of u 42.3 34 0.00075 26.0 3.3 39 11-50 9-47 (146)
20 TIGR01732 tiny_TM_bacill conse 33.8 42 0.00091 18.8 2.0 13 16-28 10-22 (26)
21 PF12729 4HB_MCP_1: Four helix 33.6 55 0.0012 21.8 3.0 20 9-28 4-23 (181)
22 PF10669 Phage_Gp23: Protein g 31.2 44 0.00096 24.5 2.3 17 12-28 18-34 (121)
23 PF02203 TarH: Tar ligand bind 27.7 28 0.0006 24.1 0.7 22 9-30 7-28 (171)
24 COG3678 CpxP P pilus assembly/ 27.0 1.5E+02 0.0033 22.3 4.6 18 55-76 40-57 (160)
25 PF12553 DUF3742: Protein of u 25.0 61 0.0013 20.6 1.8 11 52-62 40-50 (54)
26 KOG1214 Nidogen and related ba 24.7 19 0.00041 34.9 -0.7 47 52-100 806-856 (1289)
27 COG1314 SecG Preprotein transl 24.7 91 0.002 21.4 2.8 22 6-27 47-68 (86)
28 PF12662 cEGF: Complement Clr- 22.5 63 0.0014 17.4 1.4 22 55-76 2-23 (24)
29 PF04202 Mfp-3: Foot protein 3 20.4 84 0.0018 21.3 1.9 24 7-32 2-25 (71)
30 PHA02867 C-type lectin protein 20.1 1.1E+02 0.0025 23.2 2.8 15 47-61 48-62 (167)
No 1
>cd04706 PLA2_plant PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.
Probab=99.93 E-value=4.3e-27 Score=169.82 Aligned_cols=74 Identities=50% Similarity=1.126 Sum_probs=69.5
Q ss_pred cCcccccccccccccCCCC-CCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhh--cCccchhhHHHHHHHHhC
Q 041129 33 NDTQVKCSRTCVAENCNSV-GIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDK--KGLTNIKCQEKFKRCIKK 106 (106)
Q Consensus 33 ~~~~~~cs~~C~~~~C~~~-~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~--~~~~nc~Cd~~f~~CL~~ 106 (106)
++.+++|||+|++++|+.+ |.+||||||+|++|.+|++|+|+||+||+.||+||++ .++.|++||++|++||++
T Consensus 1 ~~~~~~csrtc~~~~c~~~~y~~YG~yCG~g~~g~~~~~P~D~lD~CC~~HD~Cy~~~~~~~~~c~C~~~f~~Cl~~ 77 (117)
T cd04706 1 ISVPEECSRTCESYFCSGPPFLRYGKYCGPGYSGCPGERPCDDLDACCMTHDACVQAKKNDYLSLECNEKFKNCVRR 77 (117)
T ss_pred CCccccccccchhhhccCCcccccCcccCCCCCCCCCCCCcchhhHHHHhCcCcccCCCCCcCCchHHHHHHHHHHH
Confidence 3578899999999999987 9999999999999988999999999999999999999 779999999999999974
No 2
>KOG4087 consensus Phospholipase A2 [Lipid transport and metabolism]
Probab=99.75 E-value=3.3e-19 Score=132.91 Aligned_cols=68 Identities=34% Similarity=0.643 Sum_probs=56.0
Q ss_pred cccccccccccccC-CCCCCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC-----------------------
Q 041129 35 TQVKCSRTCVAENC-NSVGIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG----------------------- 90 (106)
Q Consensus 35 ~~~~cs~~C~~~~C-~~~~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~----------------------- 90 (106)
.+.+=+-.|++..- ...|+.||||||.|++|. |+|++||||+.||+||+++.
T Consensus 23 ~~l~~Mi~~vt~~~~~l~Y~~YGCyCGlGG~G~----P~D~iDwCC~~HDcCY~~le~~gC~py~~~Ys~sc~n~~I~Cs 98 (144)
T KOG4087|consen 23 LNLKKMIECVTGKSAALSYNKYGCYCGLGGSGQ----PKDAIDWCCHAHDCCYDRLEEKGCSPYTERYSWSCSNQSITCS 98 (144)
T ss_pred HHHHHHHHHHcCCCccceecCccccccCCCCCC----ccchHHHHHhcccHHHHHHHHcCCCccccceeeEeeCCeEEeC
Confidence 44444556666666 667999999999999999 99999999999999999852
Q ss_pred -------ccchhhHHHHHHHHhC
Q 041129 91 -------LTNIKCQEKFKRCIKK 106 (106)
Q Consensus 91 -------~~nc~Cd~~f~~CL~~ 106 (106)
..-|+||++...|++|
T Consensus 99 ~~~~~C~~~lC~CDk~~a~C~~r 121 (144)
T KOG4087|consen 99 DKNTECEAQLCECDKKAAECLKR 121 (144)
T ss_pred CCccHHHHHHhhhhhHHHHHHhc
Confidence 1457899999999875
No 3
>cd00618 PLA2_like PLA2_like: Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately
Probab=99.73 E-value=1.5e-18 Score=114.12 Aligned_cols=54 Identities=35% Similarity=0.899 Sum_probs=47.4
Q ss_pred CCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC----------------------------ccchhhHHHHHHHH
Q 041129 53 IRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG----------------------------LTNIKCQEKFKRCI 104 (106)
Q Consensus 53 ~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~----------------------------~~nc~Cd~~f~~CL 104 (106)
+.||||||+|+++.+++.|+|+||+||+.||.||+.+. +++|+||++|..||
T Consensus 1 ~~ygc~CG~g~~~~~~g~p~D~~D~CC~~HD~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~C~CD~~~a~Cl 80 (83)
T cd00618 1 LPYGCYCGPGGSACPSGQPVDETDRCCRKHDCCYDQISDGGCCDGCLSYSFSEGGVTCLTNSDLCTRSHCDCDRRLAICL 80 (83)
T ss_pred CCcCcccCCCCcCCCCCCCCCcchhhhhhCccHhhhhhccCCCCCcceeeecCCceeECCCCChhhHhhCcccHHHHHHh
Confidence 47999999999966666699999999999999999751 37899999999999
Q ss_pred hC
Q 041129 105 KK 106 (106)
Q Consensus 105 ~~ 106 (106)
++
T Consensus 81 ~~ 82 (83)
T cd00618 81 AR 82 (83)
T ss_pred hh
Confidence 75
No 4
>cd00125 PLA2c PLA2c: Phospholipase A2, a family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids (PC or phosphatidylethanolamine), usually in a metal-dependent reaction, to generate lysophospholipid (LysoPL) and a free fatty acid (FA). The resulting products are either dietary or used in synthetic pathways for leukotrienes and prostaglandins. Often, arachidonic acid is released as a free fatty acid and acts as second messenger in signaling networks. Secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis (LysoPL and FA) cannot form bilayers leading to a change in membrane conformation and ultimately to a block in
Probab=99.71 E-value=2e-18 Score=123.46 Aligned_cols=61 Identities=33% Similarity=0.691 Sum_probs=51.7
Q ss_pred ccccccCCCCCCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC------------------------------c
Q 041129 42 TCVAENCNSVGIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG------------------------------L 91 (106)
Q Consensus 42 ~C~~~~C~~~~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~------------------------------~ 91 (106)
.|++++.+..|++||||||+|++|. |+|+|||||+.||.||+++. +
T Consensus 10 ~c~tgr~~~~Y~~YGCyCG~GG~G~----PvD~~DrCC~~HD~CY~~~~~~~C~p~~~~Y~y~~~~~~i~C~~~~~~C~~ 85 (115)
T cd00125 10 KCTTGRSALDYNGYGCYCGLGGSGT----PVDDTDRCCQVHDCCYDRAEKGGCSPYFTSYSYTCSDGQITCSDANDKCAR 85 (115)
T ss_pred HHhcCCCHHHHhhcCCccCCCCCCC----CcccHHHHHHHHHhHHhccccCCCccccccceEEEECCcceECcCCChHhH
Confidence 3566666778999999999999998 99999999999999999762 1
Q ss_pred cchhhHHHHHHHHhC
Q 041129 92 TNIKCQEKFKRCIKK 106 (106)
Q Consensus 92 ~nc~Cd~~f~~CL~~ 106 (106)
..|+||+++..|+++
T Consensus 86 ~~CeCDr~aa~Cf~~ 100 (115)
T cd00125 86 ALCECDRAAALCFAR 100 (115)
T ss_pred HHhHccHHHHHHHhh
Confidence 567888888888864
No 5
>cd04707 otoconin_90 otoconin_90: Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like domains in otoconins may have lost their metal-binding sites.
Probab=99.65 E-value=2.5e-17 Score=118.61 Aligned_cols=43 Identities=35% Similarity=0.767 Sum_probs=38.7
Q ss_pred cccccCCCCCCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhc
Q 041129 43 CVAENCNSVGIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKK 89 (106)
Q Consensus 43 C~~~~C~~~~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~ 89 (106)
|++++.+..|++||||||.|++|. |+|+|||||+.||.||+++
T Consensus 8 c~tgr~~~~Y~~YGCyCG~GG~G~----PvD~~DrCC~~HD~CY~~~ 50 (117)
T cd04707 8 CLTGRCPREFEDYGCYCGQEGEGL----PVDELDRCCFQHRCCLEQA 50 (117)
T ss_pred hhcCCCHHHHcccCCcccCCCCCC----CcccchhHHHHhHHHHhhh
Confidence 455566778999999999999998 9999999999999999976
No 6
>smart00085 PA2c Phospholipase A2.
Probab=99.64 E-value=1.9e-17 Score=117.96 Aligned_cols=59 Identities=34% Similarity=0.618 Sum_probs=46.9
Q ss_pred cccccCC-CCCCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC---------ccchhhHHHHHHHHh
Q 041129 43 CVAENCN-SVGIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG---------LTNIKCQEKFKRCIK 105 (106)
Q Consensus 43 C~~~~C~-~~~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~---------~~nc~Cd~~f~~CL~ 105 (106)
|++++.+ ..|..||||||.|++|. |+|+||+||+.||+||+++. ..+.+|+++++.|+.
T Consensus 11 c~t~~~~~~~y~~YGCyCG~gg~G~----pvD~~D~CC~~HD~Cy~~~~~~~C~~~~~~y~~~c~~~~~~C~~ 79 (117)
T smart00085 11 CATGKRAWLSYGDYGCYCGWGGSGT----PVDATDRCCFVHDCCYGKAEKEGCNPKTTTYSYSCDNGFITCGG 79 (117)
T ss_pred HhcCCCcccchhccCcccCCCCCCC----ccccccchhhhcCchhhhcccCCCcccccceEEEEECCcceECc
Confidence 4444433 46999999999999998 99999999999999999763 256677777776653
No 7
>PF00068 Phospholip_A2_1: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1OQS_F 1S6B_B 1XXW_B 1MH2_B 2RD4_B 1OZ6_A 2OSN_A 2PH4_B 1FDK_A 2BP2_A ....
Probab=99.50 E-value=7.1e-15 Score=104.08 Aligned_cols=51 Identities=33% Similarity=0.770 Sum_probs=44.5
Q ss_pred CCCCCCcCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC-----------------------------ccchhhHHHHH
Q 041129 51 VGIRYGKYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG-----------------------------LTNIKCQEKFK 101 (106)
Q Consensus 51 ~~~~YGcyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~-----------------------------~~nc~Cd~~f~ 101 (106)
.|.+||||||.++.|. |+|+||+||+.|+.||..+. ..-|+||++|.
T Consensus 20 ~y~~YGCyCg~~g~G~----PvD~iD~~C~~h~~Cy~~~~~~~C~~~~~~Y~~~~~~~~i~C~~~~~C~~~lCeCD~~~A 95 (116)
T PF00068_consen 20 KYNDYGCYCGFGGKGQ----PVDEIDRCCRKHDQCYKCAKEKGCDPYFTSYSYSCSNKNITCSDNDSCERALCECDKAFA 95 (116)
T ss_dssp HHSSBTTTBSSSSSSS-----SSHHHHHHHHHHHHHHHHTTTTSSTTTSS-EEEEETTEEEEESSSHHHHHHHHHHHHHH
T ss_pred HHccccccCCCCCCCC----CcccccchhHHhHHHHHHHhcccccccccceEEEEecCCcccCCCCchhHHhhhCcHHHH
Confidence 5899999999999998 99999999999999999852 15688999999
Q ss_pred HHHh
Q 041129 102 RCIK 105 (106)
Q Consensus 102 ~CL~ 105 (106)
.||.
T Consensus 96 ~cl~ 99 (116)
T PF00068_consen 96 ECLA 99 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 8
>cd04704 PLA2_bee_venom_like PLA2_bee_venom_like: A sub-family of Phospholipase A2, similar to bee venom PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. Bee venom PLA2 has fewer conserved disulfide bridges than most canonical PLA2s.
Probab=99.28 E-value=1.8e-12 Score=90.54 Aligned_cols=50 Identities=28% Similarity=0.705 Sum_probs=40.0
Q ss_pred cCcCCCCCCCC-CCC-CCCchhhhhhhhcchhhhc---------------CccchhhHHHHHHHHhC
Q 041129 57 KYCGVGWSGCP-REK-PCDDLDACYKIHDECVDKK---------------GLTNIKCQEKFKRCIKK 106 (106)
Q Consensus 57 cyCG~G~~G~~-g~~-PvD~lD~CC~~HD~CY~~~---------------~~~nc~Cd~~f~~CL~~ 106 (106)
+|||+|..+.. ... -...+|+||+.||+|++++ .+++|+||++|++||++
T Consensus 7 kWCG~Gn~a~~~~dlG~~~~tD~CCr~HD~C~~~i~~~~~kyg~~N~~~~t~~~C~CD~~f~~CL~~ 73 (97)
T cd04704 7 KWCGPGNIATNYSDLGAFRETDKCCREHDHCPDIISAGEYKYGLTNTRLFTRSHCDCDNRFRQCLKN 73 (97)
T ss_pred eecCCCCCCCCcccccCccccchHHHccccCcCcccccccccCccCCCccccccCcHHHHHHHHHHH
Confidence 89999998852 000 1258999999999999864 24899999999999985
No 9
>PF05826 Phospholip_A2_2: Phospholipase A2; InterPro: IPR001211 Phospholipase A2 (3.1.1.4 from EC) (PLA2) is a small lipolytic enzyme that releases fatty acids from the second carbon group of glycerol. It is involved in a number of physiologically important cellular processes, such as the liberation of arachidonic acid from membrane phospholipids []. It plays a pivotal role in the biosynthesis of prostaglandin and other mediators of inflammation. PLA2 has four to seven disulphide bonds and binds a calcium ion that is essential for activity. Within the active enzyme, the alpha amino group is involved in a conserved hydrogen-bonding network linking the N-terminal region to the active site. The side chains of two conserved residues, His and Asp, participate in the catalytic network. Many PLA2's are widely distributed in snakes, lizards, bees and mammals. In mammals there are at least four forms: pancreatic, membrane-associated as well as two less well characterised forms. The venom of most snakes contains multiple forms of PLA2. Some of them are presynaptic neurotoxins which inhibit neuromuscular transmission by blocking acetylcholine release from the nerve termini. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 1.; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1POC_A.
Probab=99.11 E-value=2.6e-11 Score=84.63 Aligned_cols=48 Identities=31% Similarity=0.738 Sum_probs=35.9
Q ss_pred cCcCCCCCCCC----CCCCCCchhhhhhhhcchhhhcC---------------ccchhhHHHHHHHHhC
Q 041129 57 KYCGVGWSGCP----REKPCDDLDACYKIHDECVDKKG---------------LTNIKCQEKFKRCIKK 106 (106)
Q Consensus 57 cyCG~G~~G~~----g~~PvD~lD~CC~~HD~CY~~~~---------------~~nc~Cd~~f~~CL~~ 106 (106)
+|||+|..... | ..-.+|+||+.||+|.+++. ++||+||++|.+||++
T Consensus 6 ~WCG~gn~a~~~~dlG--~~~~tD~CCR~HD~C~~~I~~~~~k~gl~N~~~~T~~hC~Cd~~f~~CL~~ 72 (99)
T PF05826_consen 6 KWCGPGNIAKNYSDLG--EFKETDRCCREHDHCPDKIPPGETKYGLHNPRPFTISHCDCDSRFYQCLKN 72 (99)
T ss_dssp SSSBSS---SSTT-----SSHHHHHHHHHHHT-SSEE-TT-EETTEE--SSS-EEBHHHHHHHHHHHHT
T ss_pred cccCCCCCccCccccc--ccHHHHHHHHhhccCCCccCCCccccccccCCcCceeecCcccHHHHHHHH
Confidence 89999998752 2 22489999999999998752 4999999999999985
No 10
>cd04705 PLA2_group_III_like PLA2_group_III_like: A sub-family of Phospholipase A2, similar to human group III PLA2. PLA2 is a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers.
Probab=98.41 E-value=1e-07 Score=67.50 Aligned_cols=34 Identities=21% Similarity=0.650 Sum_probs=29.5
Q ss_pred Cchhhhhhhhcchhhhc---------------CccchhhHHHHHHHHhC
Q 041129 73 DDLDACYKIHDECVDKK---------------GLTNIKCQEKFKRCIKK 106 (106)
Q Consensus 73 D~lD~CC~~HD~CY~~~---------------~~~nc~Cd~~f~~CL~~ 106 (106)
-.+|+||+.||+|.+++ ..+||+||++|++||++
T Consensus 32 ~~~DrCCR~HD~Cp~~I~~~~~k~gl~N~~~~tisHCdCD~rf~~CL~~ 80 (100)
T cd04705 32 KEPDRCCWKHKQCPGHIIPPFSSDGHHNFHLHSVSHCDCDSRLKDCLRL 80 (100)
T ss_pred cchhhhhhhhhcCccccCCcccccceecCCCcccccccHHHHHHHHHHH
Confidence 46899999999998874 23999999999999974
No 11
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=97.99 E-value=8.3e-06 Score=63.15 Aligned_cols=72 Identities=24% Similarity=0.462 Sum_probs=53.5
Q ss_pred cccccccccccccCCCCCCCCC----cCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcCccchhhHHHHHHHHhC
Q 041129 35 TQVKCSRTCVAENCNSVGIRYG----KYCGVGWSGCPREKPCDDLDACYKIHDECVDKKGLTNIKCQEKFKRCIKK 106 (106)
Q Consensus 35 ~~~~cs~~C~~~~C~~~~~~YG----cyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~~~nc~Cd~~f~~CL~~ 106 (106)
....|.++|-.++.+.+.++|= +=||.-.-|-+-...+-..-.||..||.||+.-+...-.||.+|..||.+
T Consensus 54 ~d~~C~y~Cp~G~~p~pr~g~k~p~~NGCGS~~~G~~~d~~iP~~t~CCn~HDiCYdTCg~~K~~CD~~F~~CL~~ 129 (184)
T PF06951_consen 54 KDGVCQYRCPYGQKPVPRPGYKPPEPNGCGSYFLGLQIDIGIPAMTKCCNQHDICYDTCGSSKEDCDSQFKSCLEK 129 (184)
T ss_pred CCCCceeeCCCCCCCCCCCCCCCCCCCCCCCcccCCcccCCCCchhccchhhhhHHHccCCCHHHHHHHHHHHHHH
Confidence 4568999999998877655542 56887433431000111378999999999999999999999999999974
No 12
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=97.11 E-value=0.00034 Score=46.47 Aligned_cols=48 Identities=31% Similarity=0.365 Sum_probs=37.3
Q ss_pred cCcCCCCCCCCCCCCCCchhhhhhhhcchhhhcC------c-cchhhHHHHHHHHh
Q 041129 57 KYCGVGWSGCPREKPCDDLDACYKIHDECVDKKG------L-TNIKCQEKFKRCIK 105 (106)
Q Consensus 57 cyCG~G~~G~~g~~PvD~lD~CC~~HD~CY~~~~------~-~nc~Cd~~f~~CL~ 105 (106)
+|.|||+.-..|+ |++.+|+.++.||..|++.- | .-..-|++|+.=|+
T Consensus 5 ~YlGPgn~l~~g~-Pv~~~D~aA~~HD~aY~~~lk~G~NPY~~~n~AD~~f~~~l~ 59 (64)
T PF08398_consen 5 KYLGPGNPLDNGE-PVNPVDAAAREHDEAYDELLKHGDNPYLHFNHADEEFIKELK 59 (64)
T ss_pred CccCCCCCcCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCceeccHhhHHHHHHHH
Confidence 7999999887674 99999999999999999852 1 33456777766443
No 13
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=82.46 E-value=0.097 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhcccccCccc-ccccccccccCCCC---CCCCCcCc
Q 041129 13 VISTLAFVFIIVFSESAGAINDTQV-KCSRTCVAENCNSV---GIRYGKYC 59 (106)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~~-~cs~~C~~~~C~~~---~~~YGcyC 59 (106)
+|..|||++-.++++-.+++++.-. -|+++|.+..|... ..+.||+|
T Consensus 3 atIlLAv~vAViv~v~ea~s~~CtS~yC~~fCgsa~C~~Y~c~~l~~gk~C 53 (98)
T PF10690_consen 3 ATILLAVVVAVIVGVQEAQSISCTSYYCKKFCGSARCSLYGCYSLHPGKIC 53 (98)
T ss_dssp ----------------------HHHH-HHHHHHHTT-SEEEEEEETTEEEE
T ss_pred cccccccccccccccccccccccchhHHHHhcCCCCCcEEEEEEECCCeEE
Confidence 4555666666667777777766444 49999999999775 33566665
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.02 E-value=9.4 Score=26.53 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 041129 12 RVISTLAFVFIIVFSESA 29 (106)
Q Consensus 12 ~~~~~~~~~~~~l~~~~~ 29 (106)
.++.+||+||+|.+.+++
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 445555566655555544
No 15
>PF07327 Neuroparsin: Neuroparsin; InterPro: IPR010850 This family consists of several locust specific neuroparsin proteins. Neuroparsins are produced by the A1 type of protocerebral median neurosecretory cells of the PI-CC system and display pleiotropic activities: inhibition of the effect of juvenile hormone, stimulation of fluid reabsorption of isolated recta, induction of an increase in hemolymph lipid and trehalose levels, and neurotrophic effects [].
Probab=56.45 E-value=18 Score=26.13 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhcccccCcccccccccccccCCCC-----CCCCCcCcCCC
Q 041129 17 LAFVFIIVFSESAGAINDTQVKCSRTCVAENCNSV-----GIRYGKYCGVG 62 (106)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~cs~~C~~~~C~~~-----~~~YGcyCG~G 62 (106)
..++.|||+-.+..+-+ ||.|+..+|..+ |..+--+||.-
T Consensus 11 tLl~~V~Lf~~~~~~p~------sr~c~~~~C~~d~~~C~YG~v~d~cgr~ 55 (103)
T PF07327_consen 11 TLLIAVILFHRAEANPI------SRSCEGANCVVDCTKCEYGEVTDFCGRK 55 (103)
T ss_pred HHHHHHHHHhccccCCc------ccccchhhcccccccccccceecccCcc
Confidence 33344456644444444 377888888665 33333567654
No 16
>PF09056 Phospholip_A2_3: Prokaryotic phospholipase A2; InterPro: IPR015141 This entry represents bacterial and fungal phospholipase A2 proteins, as well as various hypothetical and putative proteins. They enable the liberation of fatty acids and lysophospholipid by hydrolysing the 2-ester bond of 1,2-diacyl-3-sn-phosphoglycerides. The phospholipase domain adopts an alpha-helical secondary structure, consisting of five alpha-helices and two helical segments []. ; PDB: 1IT5_A 1KP4_A 1IT4_A 1LWB_A 1FAZ_A.
Probab=50.45 E-value=6.9 Score=28.19 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=20.9
Q ss_pred hhhhhhhhcchhhhcC---c----cchhhHHHHHHHH
Q 041129 75 LDACYKIHDECVDKKG---L----TNIKCQEKFKRCI 104 (106)
Q Consensus 75 lD~CC~~HD~CY~~~~---~----~nc~Cd~~f~~CL 104 (106)
----|..||-||+... . ..-.+|++|++=|
T Consensus 45 F~paC~rHDfGYrnyk~~~rf~~~~r~~iD~~F~~Dm 81 (111)
T PF09056_consen 45 FRPACQRHDFGYRNYKAQGRFTEANRKRIDDNFKADM 81 (111)
T ss_dssp -HHHHHHHHHHHHHHHHCT-HC-CCHHHHHHHHHHHH
T ss_pred CccHHHHHhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 3456999998888753 2 4577999987643
No 17
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=45.11 E-value=21 Score=19.71 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhc
Q 041129 16 TLAFVFIIVFSESA 29 (106)
Q Consensus 16 ~~~~~~~~l~~~~~ 29 (106)
..+|+|++|..+..
T Consensus 8 livVLFILLiIvG~ 21 (24)
T PF09680_consen 8 LIVVLFILLIIVGA 21 (24)
T ss_pred hHHHHHHHHHHhcc
Confidence 35666766665443
No 18
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=45.08 E-value=6.6 Score=27.63 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=8.7
Q ss_pred CCCCCcCcCCCCC
Q 041129 52 GIRYGKYCGVGWS 64 (106)
Q Consensus 52 ~~~YGcyCG~G~~ 64 (106)
-+.+|-+|.+-..
T Consensus 56 ~~y~GG~C~~~~~ 68 (90)
T PF10868_consen 56 SNYYGGQCVPVGP 68 (90)
T ss_pred cCCCCceeccCCC
Confidence 4567888886444
No 19
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=42.27 E-value=34 Score=26.04 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCcccccccccccccCCC
Q 041129 11 TRVISTLAFVFIIVFSESAGAINDTQVKCSRTCVAENCNS 50 (106)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~cs~~C~~~~C~~ 50 (106)
.|+++++++.+++|..++.+.+....++.+++ +..++..
T Consensus 9 ~~~~~a~~~~~~~~a~~~~~~Asdn~i~F~F~-i~~~~an 47 (146)
T PF10916_consen 9 VRLILAAAIGISVFAFVSHAAASDNNIPFSFT-IKPNQAN 47 (146)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCceEEE-eCCcccc
Confidence 36666666666666666666666677888777 4444433
No 20
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=33.83 E-value=42 Score=18.83 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhh
Q 041129 16 TLAFVFIIVFSES 28 (106)
Q Consensus 16 ~~~~~~~~l~~~~ 28 (106)
.++|+|++|..+.
T Consensus 10 livVLFILLIIig 22 (26)
T TIGR01732 10 LIVVLFILLVIVG 22 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 4566666665443
No 21
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=33.61 E-value=55 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 041129 9 FRTRVISTLAFVFIIVFSES 28 (106)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~ 28 (106)
.++++.++|+++++++++++
T Consensus 4 I~~KL~~~f~~~~~l~~~~~ 23 (181)
T PF12729_consen 4 IRTKLILGFGLIILLLLIVG 23 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677776666555444
No 22
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=31.22 E-value=44 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 041129 12 RVISTLAFVFIIVFSES 28 (106)
Q Consensus 12 ~~~~~~~~~~~~l~~~~ 28 (106)
+.|+.|++||+||+.+.
T Consensus 18 ~FA~L~i~~FiILLIi~ 34 (121)
T PF10669_consen 18 FFAFLFIVVFIILLIIT 34 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555565555443
No 23
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=27.67 E-value=28 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=1.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc
Q 041129 9 FRTRVISTLAFVFIIVFSESAG 30 (106)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~ 30 (106)
.++++.+.++++++++++++..
T Consensus 7 I~~~L~~~l~~~~~ll~~~~~~ 28 (171)
T PF02203_consen 7 IRTKLLLVLALFLLLLLVVGGL 28 (171)
T ss_dssp ------------------HHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3346656666666555554444
No 24
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=26.98 E-value=1.5e+02 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=11.2
Q ss_pred CCcCcCCCCCCCCCCCCCCchh
Q 041129 55 YGKYCGVGWSGCPREKPCDDLD 76 (106)
Q Consensus 55 YGcyCG~G~~G~~g~~PvD~lD 76 (106)
.+..||+.+.|. +.+.||
T Consensus 40 ~~g~~~~~~~~~----~~~~l~ 57 (160)
T COG3678 40 HGGQFGPRHQGG----MFKGLD 57 (160)
T ss_pred cCCCCCcccccc----cccccc
Confidence 466777777765 555444
No 25
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=24.95 E-value=61 Score=20.57 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=6.2
Q ss_pred CCCCCcCcCCC
Q 041129 52 GIRYGKYCGVG 62 (106)
Q Consensus 52 ~~~YGcyCG~G 62 (106)
..+||-|-+-+
T Consensus 40 ~~GfGlY~~~~ 50 (54)
T PF12553_consen 40 PAGFGLYDGDE 50 (54)
T ss_pred CCCcccccCCc
Confidence 44677665543
No 26
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=24.71 E-value=19 Score=34.89 Aligned_cols=47 Identities=28% Similarity=0.551 Sum_probs=36.8
Q ss_pred CCCCCcCcCCCCCCCCCCCCCCchhhh----hhhhcchhhhcCccchhhHHHH
Q 041129 52 GIRYGKYCGVGWSGCPREKPCDDLDAC----YKIHDECVDKKGLTNIKCQEKF 100 (106)
Q Consensus 52 ~~~YGcyCG~G~~G~~g~~PvD~lD~C----C~~HD~CY~~~~~~nc~Cd~~f 100 (106)
...|-|-|-+|++| .|..-.|. |.| |..--.||...+-..|+|..-|
T Consensus 806 gs~y~C~CLPGfsG-DG~~c~dv-DeC~psrChp~A~CyntpgsfsC~C~pGy 856 (1289)
T KOG1214|consen 806 GSTYSCACLPGFSG-DGHQCTDV-DECSPSRCHPAATCYNTPGSFSCRCQPGY 856 (1289)
T ss_pred CceEEEeecCCccC-Cccccccc-cccCccccCCCceEecCCCcceeecccCc
Confidence 56799999999999 46555555 888 7777788888888888886554
No 27
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=24.68 E-value=91 Score=21.42 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=15.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhh
Q 041129 6 FVPFRTRVISTLAFVFIIVFSE 27 (106)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~~ 27 (106)
..++.+|.++.++++|++++.+
T Consensus 47 ~~~~L~r~T~iLa~lF~i~~i~ 68 (86)
T COG1314 47 VENFLTRTTAILAVLFFIISLV 68 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3467779999999888755433
No 28
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=22.45 E-value=63 Score=17.37 Aligned_cols=22 Identities=32% Similarity=0.798 Sum_probs=14.3
Q ss_pred CCcCcCCCCCCCCCCCCCCchh
Q 041129 55 YGKYCGVGWSGCPREKPCDDLD 76 (106)
Q Consensus 55 YGcyCG~G~~G~~g~~PvD~lD 76 (106)
|=|-|..|+.-.+....+.++|
T Consensus 2 y~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 2 YTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred EEeeCCCCCcCCCCCCccccCC
Confidence 5678899988654334555554
No 29
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.44 E-value=84 Score=21.34 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcccc
Q 041129 7 VPFRTRVISTLAFVFIIVFSESAGAI 32 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 32 (106)
+++|+++ .+|+|+|=++||-+.+.
T Consensus 2 nn~Si~V--LlaLvLIg~fAVqSdag 25 (71)
T PF04202_consen 2 NNLSIAV--LLALVLIGSFAVQSDAG 25 (71)
T ss_pred CchhHHH--HHHHHHHhhheeeecCc
Confidence 3455544 34555554555444433
No 30
>PHA02867 C-type lectin protein; Provisional
Probab=20.15 E-value=1.1e+02 Score=23.20 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=9.1
Q ss_pred cCCCCCCCCCcCcCC
Q 041129 47 NCNSVGIRYGKYCGV 61 (106)
Q Consensus 47 ~C~~~~~~YGcyCG~ 61 (106)
-||.....||+.|=.
T Consensus 48 ~CP~gWi~~~~~CY~ 62 (167)
T PHA02867 48 VCPDEWIGYNSKCYY 62 (167)
T ss_pred CCCCCCEEECCEEEE
Confidence 366666666666644
Done!