BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041132
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 46/355 (12%)
Query: 28 TIPSQFIWPDGEKPSLE---LPELV-----IPPIDLCSFLSGDPFEVDKICQLVDEACKK 79
+IP ++I P E S+ L E +P IDL + S D + + + +A
Sbjct: 16 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75
Query: 80 HGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQK--AQRKIGDHCGYSSSFTGRFSNK 137
G ++NHG+ + L+++ K + FF+ + +K+K + G GY S S +
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135
Query: 138 LPWKETLTFRYRANDENSSTVVEDYFFNVM----GQDFRQFGKVYQEYCEAMSS------ 187
L W EDYFF++ +D + K +Y EA S
Sbjct: 136 LEW-------------------EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLR 176
Query: 188 -LSLGIMELLGMSLGVGRAHFREFFQGHDSI---MRLNYYPPCQKPNLTLGTGPHCDPTS 243
L+ + + L + LG+ + G + + M++NYYP C +P L LG H D ++
Sbjct: 177 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 236
Query: 244 LTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTV 303
LT + + V GLQ++ + +W + PD+ V++IGDT LSNG YKS LHR VN V
Sbjct: 237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 296
Query: 304 RKSLAFFLCPKMDKVVTPP-NNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTL 357
R S A F P DK+V P +V+ +P +P T+ H F + + L
Sbjct: 297 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ--HIEHKLFGKEQEEL 349
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 163/355 (45%), Gaps = 46/355 (12%)
Query: 28 TIPSQFIWPDGEKPSLE---LPELV-----IPPIDLCSFLSGDPFEVDKICQLVDEACKK 79
+IP ++I P E S+ L E +P IDL + S D + + + +A
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 80 HGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQK--AQRKIGDHCGYSSSFTGRFSNK 137
G ++NHG+ + L+++ K + FF+ + +K+K + G GY S S +
Sbjct: 77 WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 138 LPWKETLTFRYRANDENSSTVVEDYFFNVM----GQDFRQFGKVYQEYCEAMSS------ 187
L W EDYFF++ +D + K +Y EA S
Sbjct: 137 LEW-------------------EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLR 177
Query: 188 -LSLGIMELLGMSLGVGRAHFREFFQGHDSI---MRLNYYPPCQKPNLTLGTGPHCDPTS 243
L+ + + L + LG+ + G + + M++NYYP C +P L LG H D ++
Sbjct: 178 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 237
Query: 244 LTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTV 303
LT + + V GLQ++ + +W + PD+ V++IGDT LSNG YKS LHR VN V
Sbjct: 238 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 297
Query: 304 RKSLAFFLCPKMDKVVTPP-NNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTL 357
R S A F P DK+V P +V+ +P +P T+ H F + + L
Sbjct: 298 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ--HIEHKLFGKEQEEL 350
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 160/355 (45%), Gaps = 46/355 (12%)
Query: 28 TIPSQFIWPDGEKPSLE---LPELV-----IPPIDLCSFLSGDPFEVDKICQLVDEACKK 79
+IP ++I P E S+ L E +P IDL + S D + + + +A
Sbjct: 17 SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76
Query: 80 HGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQK--AQRKIGDHCGYSSSFTGRFSNK 137
G ++NHG+ + L ++ K + FF+ + +K+K + G GY S S +
Sbjct: 77 WGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 136
Query: 138 LPWKETLTFRYRANDENSSTVVEDYFFNVM----GQDFRQFGKVYQEYCEAMSS------ 187
L W EDYFF++ +D + K +Y EA S
Sbjct: 137 LEW-------------------EDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLR 177
Query: 188 -LSLGIMELLGMSLGVGRAHFREFFQGHDSIM---RLNYYPPCQKPNLTLGTGPHCDPTS 243
L+ + + L + LG+ + G + ++ ++NYYP C +P L LG H D ++
Sbjct: 178 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSA 237
Query: 244 LTILHQDQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTV 303
LT + + V GLQ++ + +W + PD+ V +IGDT LSNG YKS LHR VN V
Sbjct: 238 LTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKV 297
Query: 304 RKSLAFFLCPKMDKVVTPP-NNLVNANNPRIYPDFTWHNLLHFTQNYFRADVKTL 357
R S A F P DK+V P V+ +P +P T+ H F + + L
Sbjct: 298 RISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQ--HIEHKLFGKEQEEL 350
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 22/278 (7%)
Query: 71 QLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSF 130
+ + +AC+ GFF +VNHG+ + K + ++ K G +
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEV 81
Query: 131 TGRFSNKLPWKETLTFRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSL 190
T W+ T ++ N S V + + +++R+ V +++ + + L+
Sbjct: 82 T-----DXDWESTFFLKHLPIS-NISEVPD------LDEEYRE---VXRDFAKRLEKLAE 126
Query: 191 GIMELLGMSLGVGRAHFREFFQGHDSI---MRLNYYPPCQKPNLTLGTGPHCDPTSLTIL 247
+++LL +LG+ + + + F G +++ YPPC KP+L G H D + +L
Sbjct: 127 ELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILL 186
Query: 248 HQ-DQVGGLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKS 306
Q D+V GLQ+ D QW V P + VVN+GD ++NG YKS HR R S
Sbjct: 187 FQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXS 246
Query: 307 LAFFLCPKMDKVVTPPNNLVNA---NNPRIYPDFTWHN 341
LA F P D V+ P LV N ++YP F + +
Sbjct: 247 LASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDD 284
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 27/285 (9%)
Query: 68 KICQLVDEACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGDHCGY- 126
+ Q + + +++GF ++ ++ +D I A +FFA + K++ G GY
Sbjct: 21 RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYI 80
Query: 127 -----SSSFTGRFSNKLPWKETLTF----RYRANDENSSTVVEDYFFNVMGQDFRQFGKV 177
++ + K W R+RA+ + NV + F
Sbjct: 81 PFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXAD----------NVWPAEIPAFKHD 130
Query: 178 YQEYCEAMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGP 237
++ ++E + L + R F+ Q +S++RL +YPP K + G
Sbjct: 131 VSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGA 190
Query: 238 HCDPTSLTILHQDQVGGLQVY-VDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRA 296
H D ++T+L + GGL+V D QW ++P P V+NIGD L+N + S +HR
Sbjct: 191 HGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR- 249
Query: 297 AVNNTTVRK-----SLAFFLCPKMDKVVTPPNNLVNANNPRIYPD 336
VN R+ S FFL D + N V A NP YP+
Sbjct: 250 VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPE 294
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 118/308 (38%), Gaps = 56/308 (18%)
Query: 50 IPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVD-SMLIKKAHKYMDSFFAT 108
+P ID+ D ++ Q +D A + GFF VNHG++ L +K ++ S
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 109 Q--------LSKKQKAQRKIGDH------------CGYSSSFTG---RFSNKLPWKETLT 145
+ +K+ + Q + G + C + +FT R K P E
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNV 128
Query: 146 FRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRA 205
+ E Y+++V G LS +++ ++LG
Sbjct: 129 WPDETKHPGFQDFAEQYYWDVFG-------------------LSSALLKGYALALGKEEN 169
Query: 206 HFREFFQGHDSIMR--------LNYYPPCQKPNLTLGTGP----HCDPTSLTILHQDQVG 253
F F+ D++ L+ YP GT H D + +T+L+Q V
Sbjct: 170 FFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQ 229
Query: 254 GLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCP 313
LQV +Q + + +++N G L+N YK+ +HR N R+SL FF+
Sbjct: 230 NLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNL 288
Query: 314 KMDKVVTP 321
D V+ P
Sbjct: 289 GYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 118/308 (38%), Gaps = 56/308 (18%)
Query: 50 IPPIDLCSFLSGDPFEVDKICQLVDEACKKHGFFLVVNHGVD-SMLIKKAHKYMDSFFAT 108
+P ID+ D ++ Q +D A + GFF VNHG++ L +K ++ S
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 109 Q--------LSKKQKAQRKIGDH------------CGYSSSFTG---RFSNKLPWKETLT 145
+ +K+ + Q + G + C + +FT R K P E
Sbjct: 69 EKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNV 128
Query: 146 FRYRANDENSSTVVEDYFFNVMGQDFRQFGKVYQEYCEAMSSLSLGIMELLGMSLGVGRA 205
+ E Y+++V G LS +++ ++LG
Sbjct: 129 WPDETKHPGFQDFAEQYYWDVFG-------------------LSSALLKGYALALGKEEN 169
Query: 206 HFREFFQGHDSIMR--------LNYYPPCQKPNLTLGTGP----HCDPTSLTILHQDQVG 253
F F+ D++ L+ YP GT H D + +T+L+Q V
Sbjct: 170 FFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQ 229
Query: 254 GLQVYVDEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRAAVNNTTVRKSLAFFLCP 313
LQV +Q + + +++N G L+N YK+ +HR N R+SL FF+
Sbjct: 230 NLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNL 288
Query: 314 KMDKVVTP 321
D V+ P
Sbjct: 289 GYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 104/264 (39%), Gaps = 40/264 (15%)
Query: 75 EACKKHGFFLVVNHGVDSMLIKKAHKYMDSFFATQLSKKQKAQRKIGD----------HC 124
E+ ++ GF ++ NH +D L+++ + +FF ++ + R+ D
Sbjct: 20 ESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASISETAK 79
Query: 125 GYSSSFTGRFSNKLPWKETLTFRYRANDENSSTVVEDYF-FNVMGQDFRQFGKVYQEYCE 183
G++ + + PW R D + ++ Y N + + ++ + Y E
Sbjct: 80 GHTVKDIKEYYHVYPWG-------RIPDSLRANILAYYEKANTLASELLEWIETYSP-DE 131
Query: 184 AMSSLSLGIMELLGMSLGVGRAHFREFFQGHDSIMRLNYYPPC--QKPNLTLGTGPHCDP 241
+ S+ + E + S H +++R+ +YPP + + H D
Sbjct: 132 IKAKFSIPLPEXIANS--------------HKTLLRILHYPPXTGDEEXGAIRAAAHEDI 177
Query: 242 TSLTILHQDQVGGLQVYV-DEQWQSVSPNPDAFVVNIGDTFMALSNGIYKSCLHRA---- 296
+T+L GLQV D W V + ++NIGD S+G + S HR
Sbjct: 178 NLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPE 237
Query: 297 AVNNTTVRKSLAFFLCPKMDKVVT 320
+ T R SL FL P V++
Sbjct: 238 GTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 203 GRAHFREFFQGHDSIMRLNYYPPCQKPNLTLGTGPHCDPTSLTIL-HQDQVGGLQVYVDE 261
G +H + + H+ LN PP +LT G + LT+L H D L++
Sbjct: 478 GLSHLQVLYLNHN---YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDIS 534
Query: 262 QWQSVSPNPDAFV 274
+ Q ++PNPD FV
Sbjct: 535 RNQLLAPNPDVFV 547
>pdb|3H7L|A Chain A, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|B Chain B, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
pdb|3H7L|C Chain C, Crystal Structure Of Endoglucanase-Related Protein From
Vibrio Parahaemolyticus
Length = 586
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 37 DGEKPSLELPELVIPPIDLCSFLS--GDPFEVDKICQLVDEACK 78
DG +P E +P I LC +L+ D + + + +V+ AC+
Sbjct: 354 DGSRPYFHAAEAGLPTIALCEYLAIEDDSVQTESVKCIVNRACE 397
>pdb|3PTY|A Chain A, Crystal Structure Of The C-Terminal Extracellular Domain
Of Mycobacterium Tuberculosis Embc
Length = 406
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 190 LGIMELLGMSLGVGRAHFREFFQGHDSIMRLN-YYPPCQKPNLTLGT 235
LGI ELL + V ++F+ ++ RL YYP Q +L LGT
Sbjct: 315 LGITELLMRATTVASYLKDDWFRDWGALQRLTPYYPDAQPADLNLGT 361
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 230 NLTLGTGPHCDPTSLTILHQD---QVGGLQVYVDEQWQSVSPNPD 271
N+T+ T P S+TIL + +VGG+ V ++W+ P+PD
Sbjct: 258 NVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPD 302
>pdb|4AP8|A Chain A, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|B Chain B, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|C Chain C, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|D Chain D, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
Length = 135
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 95 IKKAHKYMDSFFATQLSKKQKAQRKIGDHCGYSSSFTGRFSNKLPWKETLTFRYRA 150
+++ K + +F A +LS + +Q I CG S F G N K+ ++ Y A
Sbjct: 2 VEEKSKDVINFTAEKLSVDEVSQLVISPLCGAISLFVGTTRNNFEGKKVISLEYEA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,668,707
Number of Sequences: 62578
Number of extensions: 487985
Number of successful extensions: 990
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 16
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)