Query 041134
Match_columns 267
No_of_seqs 191 out of 593
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 98.6 7.4E-08 2.5E-12 78.7 7.9 108 125-234 23-140 (148)
2 2i1a_A DNA damage-inducible pr 98.5 5.3E-07 1.8E-11 72.8 8.9 99 125-226 25-133 (148)
3 1fmb_A EIAV protease; hydrolas 95.9 0.036 1.2E-06 42.2 8.0 85 128-216 10-101 (104)
4 3slz_A GAG-Pro-POL polyprotein 93.8 0.035 1.2E-06 44.1 3.0 87 127-231 23-119 (132)
5 3ec0_A Protease; HIV-2, inhibi 90.2 1.1 3.7E-05 33.6 7.3 77 128-216 10-96 (99)
6 2hs1_A HIV-1 protease; ultra-h 86.1 2.5 8.5E-05 31.6 6.9 77 128-216 10-96 (99)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 72.8 13 0.00044 31.3 7.7 79 128-217 10-97 (203)
8 2hah_A Protease, retropepsin; 72.3 4.2 0.00014 31.2 4.3 28 124-154 13-40 (116)
9 3ka2_A [L-Ala51;Gly51']HIV-1 p 71.1 15 0.00052 30.9 7.8 99 105-216 93-200 (203)
10 2rsp_A RSV protease; hydrolase 34.5 65 0.0022 24.7 5.2 17 199-216 104-120 (124)
11 2pma_A Uncharacterized protein 33.6 25 0.00086 27.9 2.7 35 185-219 100-139 (146)
12 2r2d_A AGR_PTI_140P, Zn-depend 25.0 1.4E+02 0.0047 24.7 6.2 12 140-151 54-65 (276)
13 3fv3_A SAPP1P-secreted asparti 21.7 79 0.0027 27.5 4.1 29 125-153 12-41 (339)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=98.63 E-value=7.4e-08 Score=78.70 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=73.6
Q ss_pred CceEEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCC--------eeeeccee--eEEEEE
Q 041134 125 DALVISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGI--------VTYSDGSL--LTDFLV 194 (267)
Q Consensus 125 ~~Lvi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~--------~~~~lG~i--~v~F~V 194 (267)
..|++.+.|++..+ ++|||+||+.++|+.+..+++|+....-........|.++. ....+|.. .+.|.|
T Consensus 23 ~~l~v~~~Ing~~v-~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~V 101 (148)
T 3s8i_A 23 TMLYINCKVNGHPL-KAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSI 101 (148)
T ss_dssp CCCEEEEEETTEEE-EEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEEECCEEE-EEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEEE
Confidence 46899999999977 89999999999999999999999643111111122233211 11223332 678888
Q ss_pred eeeCCccceeecchhhhhcccccccceeeeeeecCCceEE
Q 041134 195 VKATSPYNAILGRQWIHKMRVVPSTYHQVLCYQTIYGIEE 234 (267)
Q Consensus 195 vd~~~~yn~iLGrpwLh~~~aipst~hq~vk~~~~~G~i~ 234 (267)
+|. ..++.|||..||.+.+++......+|.+...+-.|.
T Consensus 102 le~-~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~~~~p 140 (148)
T 3s8i_A 102 LED-QPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTY 140 (148)
T ss_dssp ETT-CSSSEEECHHHHHHTTCEEETTTTEEECTTTCCEEE
T ss_pred eCC-CCcCeeccHHHHHhCCEEEEcCCCEEEEccCCeEEe
Confidence 874 457999999999999988777766665544332343
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5.3e-07 Score=72.84 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=66.0
Q ss_pred CceEEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCe--------eeeccee--eEEEEE
Q 041134 125 DALVISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIV--------TYSDGSL--LTDFLV 194 (267)
Q Consensus 125 ~~Lvi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~--------~~~lG~i--~v~F~V 194 (267)
..+++.+.|++.. -+.|||+||+.++++.+..+++|+....-........|.++.. ...+|.+ .+.|.|
T Consensus 25 ~~~~v~v~InG~~-~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~~~~~~~~~~i~ig~~~~~~~~~v 103 (148)
T 2i1a_A 25 PMLYINIEINNYP-VKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTV 103 (148)
T ss_dssp CCCEEEEEETTEE-EEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-----------CEEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEEEEEECCEE-EEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcccccEEEEEEEEECCEEeceeEEE
Confidence 4578999999995 5799999999999999999999986532111111234554421 1223444 678888
Q ss_pred eeeCCccceeecchhhhhcccccccceeeeee
Q 041134 195 VKATSPYNAILGRQWIHKMRVVPSTYHQVLCY 226 (267)
Q Consensus 195 vd~~~~yn~iLGrpwLh~~~aipst~hq~vk~ 226 (267)
++ .+++.|||..||.++++....-...|.+
T Consensus 104 l~--~~~d~iLG~d~L~~~~~~ID~~~~~l~l 133 (148)
T 2i1a_A 104 LD--TDIDVLIGLDMLKRHLACVDLKENVLRI 133 (148)
T ss_dssp EC--SSCSEEECHHHHHHTTCEEETTTTEEEE
T ss_pred ec--CCCCeEecHHHHhhCCEEEECCCCEEEE
Confidence 88 4689999999999998865554444443
No 3
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=95.88 E-value=0.036 Score=42.18 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=57.1
Q ss_pred EEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCeeeeccee-------eEEEEEeeeCCc
Q 041134 128 VISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIVTYSDGSL-------LTDFLVVKATSP 200 (267)
Q Consensus 128 vi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~~~~lG~i-------~v~F~Vvd~~~~ 200 (267)
++++.|++. ....|+|+|+-.-++.......|+.+....+| ..+.|..|....---.+ .+.-.|+-..+|
T Consensus 10 ~v~v~I~Gq-~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p--~~i~GiGG~i~v~~~~i~i~i~g~~~~gtvlv~~tp 86 (104)
T 1fmb_A 10 TTIVLINDT-PLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG--TGIGGVGGNVETFSTPVTIKKKGRHIKTRMLVADIP 86 (104)
T ss_dssp EEEEEETTE-EEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC--CCEEETTEEECCEEEEEEEEETTEEEEEEEEEESCS
T ss_pred EEEEEECCE-EEEEEeccCCCcEEEccccCcccCCCCccCCc--cEEEeCCCeEEeeEeeeEEEECCeEEEEEEEECCCC
Confidence 467999987 56789999999999998888888876532222 56677665321111112 222223336678
Q ss_pred cceeecchhhhhcccc
Q 041134 201 YNAILGRQWIHKMRVV 216 (267)
Q Consensus 201 yn~iLGrpwLh~~~ai 216 (267)
.| |+||.||.++++.
T Consensus 87 ~n-iiGRd~L~qlg~t 101 (104)
T 1fmb_A 87 VT-ILGRDILQDLGAK 101 (104)
T ss_dssp SC-EECHHHHHHTTCC
T ss_pred CC-EecHhHHhhcCcE
Confidence 77 8999999988764
No 4
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=93.84 E-value=0.035 Score=44.08 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=53.6
Q ss_pred eEEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCeee--------eccee--eEEEEEee
Q 041134 127 LVISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIVTY--------SDGSL--LTDFLVVK 196 (267)
Q Consensus 127 Lvi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~~~--------~lG~i--~v~F~Vvd 196 (267)
.++++.|++..+ +.|+|+|++.-+|...-+. +......+.|.+|.... .+|.. ...| +|.
T Consensus 23 P~v~i~I~G~~~-~~LlDTGAd~tVl~~~~~p--------~~~~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~-lV~ 92 (132)
T 3slz_A 23 PRITLKVGGQPV-TFLVDTGAQHSVLTQNPGP--------LSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSF-LHV 92 (132)
T ss_dssp SEEEEEETTEEE-EEEECTTCSSCEECSCCCS--------EEEEEEEEECSSCEEEEEEECCEEEEETTEEEEECC-EEC
T ss_pred CEEEEEECCEEE-EEEEeCCCCeEEEccccCC--------CCCCceEEEccCCEEEEEEEeeeEEEECCeeecceE-EEE
Confidence 357799999765 5789999998888643211 12223567777775331 11111 2233 333
Q ss_pred eCCccceeecchhhhhcccccccceeeeeeecCCc
Q 041134 197 ATSPYNAILGRQWIHKMRVVPSTYHQVLCYQTIYG 231 (267)
Q Consensus 197 ~~~~yn~iLGrpwLh~~~aipst~hq~vk~~~~~G 231 (267)
...|.| ||||.||.++++. +.|+.+.+
T Consensus 93 ~~tPvn-LLGrd~Ltqlg~t-------L~fp~~g~ 119 (132)
T 3slz_A 93 PDCPYP-LLGRDLLTKLKAQ-------IHFEGSGA 119 (132)
T ss_dssp TTSSSC-EECHHHHHHHTCE-------EEEETTEE
T ss_pred CCCCcc-EECHhhHhhCCcE-------EECCCCCc
Confidence 556665 6999999999886 55665433
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=90.25 E-value=1.1 Score=33.62 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=44.8
Q ss_pred EEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCee---------eeccee-eEEEEEeee
Q 041134 128 VISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIVT---------YSDGSL-LTDFLVVKA 197 (267)
Q Consensus 128 vi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~~---------~~lG~i-~v~F~Vvd~ 197 (267)
++++.|++.. ...|+|+|+-..++. .+.. +...+| ..+.|..|... +--|+- .-+|.| .
T Consensus 10 ~vti~I~Gq~-~e~LLDTGAD~TVl~-----~~~~-Pg~w~p--k~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV--~ 78 (99)
T 3ec0_A 10 VVTAYIEGQP-VEVLLDTGADDSIVA-----GIEL-GNNYSP--KIVGGIGGFINTKEYKNVEIEVLNKKVRATIMT--G 78 (99)
T ss_dssp EEEEEETTEE-EEEEECTTCSSCEES-----SCCC-CSCCEE--EEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE--E
T ss_pred eEEEEECCEE-EEEEEecCCCceEEc-----Cccc-CCCCCc--eEEEecCCcEeeeEEeeEEEEECCeEEEEEEEe--C
Confidence 5679999965 567899999888873 1221 111222 24556554211 111221 222333 6
Q ss_pred CCccceeecchhhhhcccc
Q 041134 198 TSPYNAILGRQWIHKMRVV 216 (267)
Q Consensus 198 ~~~yn~iLGrpwLh~~~ai 216 (267)
++|.| |+||.+|.++++.
T Consensus 79 ~tPvn-iiGRnlLtqlG~t 96 (99)
T 3ec0_A 79 DTPIN-IFGRNILTALGMS 96 (99)
T ss_dssp CCSSC-EECHHHHHHHTCE
T ss_pred CCCcC-eeehhhHhhcCcE
Confidence 67887 6999999998764
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=86.06 E-value=2.5 Score=31.60 Aligned_cols=77 Identities=29% Similarity=0.562 Sum_probs=44.3
Q ss_pred EEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCee---------eeccee-eEEEEEeee
Q 041134 128 VISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIVT---------YSDGSL-LTDFLVVKA 197 (267)
Q Consensus 128 vi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~~---------~~lG~i-~v~F~Vvd~ 197 (267)
++++.|++.. ...|+|+|+-.-++.. +..+. .-+ ...+.|..|... +--|+- .-++.| .
T Consensus 10 ~vtvkI~Gq~-~eaLLDTGAD~TVl~~-----~~~p~-~wk--pk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV--~ 78 (99)
T 2hs1_A 10 LVTIKIGGQL-KEALLDTGADDTIIEE-----MSLPG-RWK--PKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLV--G 78 (99)
T ss_dssp EEEEEETTEE-EEEEECTTCSSEEESC-----CSSCC-CCE--EEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE--S
T ss_pred EEEEEECCEE-EEEEeccCCCcEEEec-----ccCCC-CCC--CcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEe--C
Confidence 4678998865 5789999998888752 22211 111 124555543211 111111 222333 6
Q ss_pred CCccceeecchhhhhcccc
Q 041134 198 TSPYNAILGRQWIHKMRVV 216 (267)
Q Consensus 198 ~~~yn~iLGrpwLh~~~ai 216 (267)
++|.| |+||.||.++++.
T Consensus 79 ~tPvn-iiGRd~Ltqlg~t 96 (99)
T 2hs1_A 79 PTPVN-IIGRNLLTQIGAT 96 (99)
T ss_dssp CCSSC-EECHHHHTTTTCE
T ss_pred CCccC-chhHhHHHHcCCE
Confidence 67887 8999999988764
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=72.78 E-value=13 Score=31.31 Aligned_cols=79 Identities=23% Similarity=0.494 Sum_probs=47.3
Q ss_pred EEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCCe---eee------cceeeEEEEEeeeC
Q 041134 128 VISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGIV---TYS------DGSLLTDFLVVKAT 198 (267)
Q Consensus 128 vi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~~---~~~------lG~i~v~F~Vvd~~ 198 (267)
.+++.|++. ....|+|+|+...++- .+.++. .-+ ...+.|..|.. ... .|. .+.-.|+-.+
T Consensus 10 ~vtv~I~Gq-~~e~LLDTGAD~TVl~-----~~~lpg-~w~--pk~igGIGG~i~vrqy~~i~iei~g~-~~~gtvlVg~ 79 (203)
T 3ka2_A 10 LVTIRIGGQ-LKEALLDTGADDTVIE-----ELNLPG-XWK--PKLIGGIAGFIKVRQYDQIPVEIXGH-KAIGTVLVGP 79 (203)
T ss_dssp EEEEEETTE-EEEEEECTTCSSCEEC-----SCCCSS-CEE--EEEEEETTEEEEEEEEEEEEEEETTE-EEEEEEEESC
T ss_pred eEEEEECCE-EEEEEEecCCCceEEe-----cccCCC-CCC--ceEEEEccCcEEEEEEcceeEEEcCe-EEEEEEeeCC
Confidence 567999997 5678899999888874 233322 111 12455655421 111 122 2222233356
Q ss_pred Cccceeecchhhhhccccc
Q 041134 199 SPYNAILGRQWIHKMRVVP 217 (267)
Q Consensus 199 ~~yn~iLGrpwLh~~~aip 217 (267)
.|.| |+||..|.++++.-
T Consensus 80 tPvn-IiGRd~LtqlG~tL 97 (203)
T 3ka2_A 80 TPVN-IIGRNLLTQIGXTL 97 (203)
T ss_dssp CSSC-EECHHHHTTTTCEE
T ss_pred CCcC-ccchhhhhhcCceE
Confidence 8889 79999999988753
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=72.29 E-value=4.2 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.471 Sum_probs=22.1
Q ss_pred CCceEEEeeeCCeeeeEEeecCCCccccchH
Q 041134 124 DDALVISIKIGNCLVRRILIDNGSSVNILDD 154 (267)
Q Consensus 124 ~~~Lvi~~~I~~~~V~riLvD~GSs~nil~~ 154 (267)
..|++ +.|++.. ...|+|+|+-.-++..
T Consensus 13 ~rP~v--ikI~Gq~-~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 13 RPEIL--IFVNGYP-IKFLLDTGADITVLNR 40 (116)
T ss_dssp CCEEE--EEETTEE-EEEEECTTCSSCEEEG
T ss_pred CCCEE--EEECCEE-EEEEecCCCCcEEEcc
Confidence 35666 8999875 4789999999888864
No 9
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=71.08 E-value=15 Score=30.86 Aligned_cols=99 Identities=22% Similarity=0.416 Sum_probs=56.2
Q ss_pred ccceeEeCCCCCccccCCCCCceEEEeeeCCeeeeEEeecCCCccccchHHHHHhhccCcCCCCCCCccEEeeeCC--e-
Q 041134 105 VQSEVSFLPQDLKLIQSPHDDALVISIKIGNCLVRRILIDNGSSVNILDDATVEKMRLEQDKIKPFEQPLIGFSGI--V- 181 (267)
Q Consensus 105 ~~~~I~F~~~d~~~v~~ph~~~Lvi~~~I~~~~V~riLvD~GSs~nil~~~~~~~mg~~~~~L~~~~~~l~gf~g~--~- 181 (267)
+...+.|+-...+.+ .-...|+ ++..|++. ....|+|+|+-..++- .+..+ ...+| ..+.|..|. .
T Consensus 93 lG~tLnf~i~~gpqi-~lw~rP~-~~iki~Gq-~~e~LlDTGAD~TVl~-----~~~lp-g~w~p--k~igGiGg~i~v~ 161 (203)
T 3ka2_A 93 IGXTLNFXGGGGPQI-TLWKRPL-VTIRIGGQ-LKEALLDTGADDTVIE-----ELNLP-GXWKP--KLIGGIGGFIKVR 161 (203)
T ss_dssp TTCEEEGGGGTSCEE-CSSSCCE-EEEEETTE-EEEEEECTTCSSCEEC-----SCCCC-SCCEE--EEEEETTEEEEEE
T ss_pred cCceEEecccCCCce-eecCCCc-EEEEECCE-EEeeeecccCCceeee-----cccCC-CCCCc--eEEeeccceEEEE
Confidence 345788883222222 1223454 67999995 5678899999888872 22221 11111 356666552 1
Q ss_pred e------eecceeeEEEEEeeeCCccceeecchhhhhcccc
Q 041134 182 T------YSDGSLLTDFLVVKATSPYNAILGRQWIHKMRVV 216 (267)
Q Consensus 182 ~------~~lG~i~v~F~Vvd~~~~yn~iLGrpwLh~~~ai 216 (267)
. +-.|+ .+...|+-.+.|.| |+||..|.++++.
T Consensus 162 qy~~i~iei~g~-~~~~tvlVgptPvn-iiGRn~LtqlG~t 200 (203)
T 3ka2_A 162 QYDQIPVEIXGH-KAIGTVLVGPTPVN-IIGRNLLTQIGXT 200 (203)
T ss_dssp EEEEEEEEETTE-EEEEEEEESCCSSC-EECHHHHGGGTCE
T ss_pred EeccEEEEECCe-EEEEEEEECCCCcC-eechhhHHHhCCe
Confidence 1 11232 33334444667888 7899999988764
No 10
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=34.47 E-value=65 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.6
Q ss_pred Cccceeecchhhhhcccc
Q 041134 199 SPYNAILGRQWIHKMRVV 216 (267)
Q Consensus 199 ~~yn~iLGrpwLh~~~ai 216 (267)
.|+| |+||..|.++++.
T Consensus 104 tPvn-IiGRdlLtqlG~t 120 (124)
T 2rsp_A 104 VRGS-ILGRDCLQGLGLR 120 (124)
T ss_dssp CSSE-EECHHHHHHTTCE
T ss_pred Ccee-EECHhHHhhCCcE
Confidence 5666 7999999988875
No 11
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=33.56 E-value=25 Score=27.90 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=23.7
Q ss_pred ccee--eEEEEEee-eCCccceeecchhhhh--ccccccc
Q 041134 185 DGSL--LTDFLVVK-ATSPYNAILGRQWIHK--MRVVPST 219 (267)
Q Consensus 185 lG~i--~v~F~Vvd-~~~~yn~iLGrpwLh~--~~aipst 219 (267)
+|.. .+.|...| ..-.|.++|||.||.. +-+=|+.
T Consensus 100 lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~ 139 (146)
T 2pma_A 100 LGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPAL 139 (146)
T ss_dssp ETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTC
T ss_pred ECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCch
Confidence 4444 67777776 4558999999999944 4444443
No 12
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=25.05 E-value=1.4e+02 Score=24.65 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.0
Q ss_pred EEeecCCCcccc
Q 041134 140 RILIDNGSSVNI 151 (267)
Q Consensus 140 riLvD~GSs~ni 151 (267)
.+|||+|.....
T Consensus 54 ~iLiD~G~~~~~ 65 (276)
T 2r2d_A 54 TVLYDTGCHPEC 65 (276)
T ss_dssp EEEECCCSCTTC
T ss_pred CEEEECCCCccc
Confidence 699999987764
No 13
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=21.69 E-value=79 Score=27.46 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=22.1
Q ss_pred CceEEEeeeCC-eeeeEEeecCCCccccch
Q 041134 125 DALVISIKIGN-CLVRRILIDNGSSVNILD 153 (267)
Q Consensus 125 ~~Lvi~~~I~~-~~V~riLvD~GSs~nil~ 153 (267)
...++.+.|+. -+--++++|+||+.=+++
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~ 41 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVV 41 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEe
Confidence 45778888884 345589999999987775
Done!