BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041136
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
           Inhibitor Eglin C From Hirudo Medicinalis
          Length = 249

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 16/72 (22%)

Query: 131 AFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV----------------LKE 174
           A  KN  E+  E G + V +   H + +WN + L + + L+                L E
Sbjct: 56  AVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPE 115

Query: 175 KVEFLKQDFPGY 186
           K   L +D+P Y
Sbjct: 116 KDSLLPKDYPCY 127


>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
           The Inhibitor Y27632
          Length = 402

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 117 QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY---NQWNVMGLADKLGLVLK 173
           +D  + K  KNL+ AFL +    LG  G   +     HP+   +QWN   + +    V+ 
Sbjct: 302 EDAEISKHAKNLICAFLTDREVRLGRNGVEEIK---QHPFFKNDQWNWDNIRETAAPVVP 358

Query: 174 E-KVEFLKQDFPGYHNKRGGGVKSNKKFPLKECFT 207
           E   +    +F    + +G      + FP+ + F 
Sbjct: 359 ELSSDIDSSNFDDIEDDKG----DVETFPIPKAFV 389


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,952,089
Number of Sequences: 62578
Number of extensions: 279354
Number of successful extensions: 672
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)