BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041136
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana
GN=At4g26485 PE=4 SV=1
Length = 209
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 127/201 (63%), Gaps = 1/201 (0%)
Query: 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS 70
KWI HY++ +ILLVGEG+FSFS CLA AFGSA N+ A+SLDSE L K+ + ++
Sbjct: 6 KWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNINI 65
Query: 71 LWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE 130
L GC + H V+VHTM +LS ++D I+FNFPHAG E + I+ HK L+
Sbjct: 66 LKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELVR 125
Query: 131 AFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKR 190
FL+N +EML E GE+H+T + +P++ W + L GL L +K +F +PGY KR
Sbjct: 126 GFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITKR 185
Query: 191 G-GGVKSNKKFPLKECFTFKF 210
G GG +S+ FP+ EC T+ F
Sbjct: 186 GSGGRRSDDYFPVGECSTYMF 206
>sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPCC1919.13c PE=3 SV=1
Length = 282
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 4/184 (2%)
Query: 11 KWISHYTNNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ 69
+++ + N R LL+GEG+FSF+ L S ++A+S DS+ LK K+ + ++
Sbjct: 49 RYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYIS 108
Query: 70 SLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL 129
+ G V+H ++ + H L KFD I +NFPH+G + +QD N++ K LL
Sbjct: 109 KIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKG--IKDQDRNILDNQKMLL 166
Query: 130 EAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNK 189
AF K + +L E G + +TL + PY WN+ GLA G +F +P Y ++
Sbjct: 167 -AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHR 225
Query: 190 RGGG 193
R G
Sbjct: 226 RTIG 229
>sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1
homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2
Length = 622
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L + ++ A+ L+ + +L+ L RG V
Sbjct: 4 RRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGDP-VALENLKRLRERGVEVR 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
GV+ + FD I FNFPH G + +++ LL F ++ ++
Sbjct: 63 FGVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG--------VAKNRELLAKFFQSCADV 114
Query: 140 LGEGGEVHVTL-------RDDHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L + GEVHVTL D P +N W V+ +A G +L + F + PGY
Sbjct: 115 LAKAGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY-- 172
Query: 189 KRGGGVKSNKKFPLKECFTFKF 210
K G ++ F ++ T+ F
Sbjct: 173 KCTGYRSQDRPFHIEGALTYIF 194
>sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1
OS=Homo sapiens GN=FDXACB1 PE=2 SV=3
Length = 624
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L+ +T + A+ L L + + +LQ L RG V
Sbjct: 4 RRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAEL-ARDPLAWENLQCLRERGIDVR 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
GV+ + L + +FD I F FPH G + +++ LL F ++ ++
Sbjct: 63 FGVDCTQLADVFELHEREFDQIYFIFPHCGRKAG--------VAKNRELLAKFFQSCADV 114
Query: 140 LGEGGEVHVTL-------RDDHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L E GEVHV L D P +N W V+ +A GL+L + F + GY
Sbjct: 115 LAEEGEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGY-- 172
Query: 189 KRGGGVKSNKK 199
+ G +S K
Sbjct: 173 -KCTGYRSQDK 182
>sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YIL096C PE=1 SV=1
Length = 336
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 59/243 (24%)
Query: 16 YTNNQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDS---ERTLKTKHWTSQAHLQSL 71
+ ++ ++L GEGDFSF+ + + + + N++ +S D+ E LK H T + + Q L
Sbjct: 68 FEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPH-TFEENYQYL 126
Query: 72 WSRGCLVLHGVNVHTMDRHPTLSQMK--FDVI----------------IFNFPHAGHSPP 113
+ ++V + + +S+ F +I +FNFPH G
Sbjct: 127 KDLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNGKG-- 184
Query: 114 LSEQDTNLIKRHKNLLEAFLKN-------------------------------GREMLGE 142
+ +Q+ N I+ H++L+ F +N +++ E
Sbjct: 185 IKDQERN-IREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAE 243
Query: 143 G-GEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVKSNKKFP 201
G G + ++L D PY+ W + LA K GL L +F ++FPGYH++R + K P
Sbjct: 244 GYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQDTTK-P 302
Query: 202 LKE 204
KE
Sbjct: 303 AKE 305
>sp|Q0HRP2|TRMN6_SHESR tRNA1(Val) (adenine(37)-N6)-methyltransferase OS=Shewanella sp.
(strain MR-7) GN=Shewmr7_3230 PE=3 SV=1
Length = 236
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 69 QSLWSRGCLVLHGVNVHTMDRHPTLSQMK--FDVIIFNFPHAGHSPPLSEQDTNLIKRHK 126
QS W++ C ++HG H L+Q + FD II N P+ H P SEQ + + +
Sbjct: 79 QSPWAKRCQLVHGDIQHVCQ----LAQYQGYFDHIICNPPYFEHGPKASEQHRAMARHTE 134
Query: 127 NL 128
L
Sbjct: 135 TL 136
>sp|Q47282|T1ME_ECOLX Type I restriction enzyme EcoEI M protein OS=Escherichia coli
GN=hsdM PE=3 SV=1
Length = 490
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 36 LARAFGSATNMVASSLDSERTLKTKHW-TSQAHLQSLWSRGCLVLHGVNVHTMDRHP-TL 93
LA AF + + + +TL+ + + + L L ++LHG+ V RH TL
Sbjct: 197 LACAFDHVKDNYVKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEVPVQIRHDNTL 256
Query: 94 SQ------MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147
++ + DVI+ N P G E++ + + + FL+ E+L + G
Sbjct: 257 NKPLSSWDEQVDVIVTNPPFGGTEEDGIEKNFPAEMQTRETADLFLQLIIEVLADKGRAA 316
Query: 148 VTLRD 152
V L D
Sbjct: 317 VVLPD 321
>sp|Q0HM44|TRMN6_SHESM tRNA1(Val) (adenine(37)-N6)-methyltransferase OS=Shewanella sp.
(strain MR-4) GN=Shewmr4_0793 PE=3 SV=1
Length = 236
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 69 QSLWSRGCLVLHGVNVHTMDRHPTLSQMK--FDVIIFNFPHAGHSPPLSEQDTNLIKRHK 126
QS W++ C ++HG ++ ++ + L+Q + FD II N P+ H P SEQ + + +
Sbjct: 79 QSPWAKRCQLVHG-DIQSVCQ---LAQYQGYFDHIICNPPYFEHGPKASEQHRAMARHTE 134
Query: 127 NL 128
L
Sbjct: 135 TL 136
>sp|Q5LNK3|ACPS_RUEPO Holo-[acyl-carrier-protein] synthase OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=acpS PE=3 SV=1
Length = 148
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 137 REMLGEGGE--VHVTLRDDHPYNQWNVMGLADKLGLV 171
REM EG E +HVTL DDHP+ Q V+ A L V
Sbjct: 99 REMTPEGYEAIIHVTLTDDHPWAQAFVVIEARPLAEV 135
>sp|A0L0I8|TRMN6_SHESA tRNA1(Val) (adenine(37)-N6)-methyltransferase OS=Shewanella sp.
(strain ANA-3) GN=Shewana3_3333 PE=3 SV=1
Length = 241
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 22 ILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81
IL +G G S L A S + A L+ + ++ +Q S W+ C ++HG
Sbjct: 38 ILDIGAGSGLLS--LMAAQRSQGQITAVELEEKAAAACQYNMTQ----SPWADRCKLIHG 91
Query: 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL 129
H + Q FD II N P+ H P +EQ + RH + L
Sbjct: 92 DIQHVCQQ--AEYQEYFDHIICNPPYFEHGPKANEQH-RAMARHTDTL 136
>sp|A6X546|GLMU_OCHA4 Bifunctional protein GlmU OS=Ochrobactrum anthropi (strain ATCC
49188 / DSM 6882 / NCTC 12168) GN=glmU PE=3 SV=1
Length = 454
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 128 LLEA-FLKNGREMLGEGGEVHVT-LRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPG 185
L+EA L+ RE L EG +V V R D+P+ ++ DKL +++EK +Q G
Sbjct: 111 LIEAQSLQKARERLAEGADVVVIGFRPDNPHGYGRLIEKGDKLVAIIEEKEATEEQKQIG 170
Query: 186 YHN 188
+ N
Sbjct: 171 FCN 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,108,992
Number of Sequences: 539616
Number of extensions: 3514511
Number of successful extensions: 7141
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 7113
Number of HSP's gapped (non-prelim): 49
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)