Query 041136
Match_columns 214
No_of_seqs 107 out of 286
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10354 DUF2431: Domain of un 100.0 3.9E-65 8.4E-70 420.9 17.1 166 23-191 1-166 (166)
2 KOG4174 Uncharacterized conser 100.0 2.8E-57 6E-62 391.8 17.0 207 4-211 42-253 (282)
3 PF05175 MTS: Methyltransferas 98.5 1E-06 2.2E-11 72.3 8.7 112 18-152 31-142 (170)
4 COG4123 Predicted O-methyltran 98.3 9.8E-06 2.1E-10 71.3 11.0 151 12-175 39-192 (248)
5 PF13659 Methyltransf_26: Meth 98.2 3.7E-06 7.9E-11 63.4 6.0 114 20-150 2-115 (117)
6 TIGR00091 tRNA (guanine-N(7)-) 98.2 4.1E-06 8.9E-11 70.0 6.1 141 17-174 15-155 (194)
7 TIGR00537 hemK_rel_arch HemK-r 98.0 0.00032 7E-09 57.5 14.9 140 17-174 18-162 (179)
8 TIGR00446 nop2p NOL1/NOP2/sun 98.0 0.0001 2.2E-09 64.7 12.6 160 3-172 56-223 (264)
9 PRK15001 SAM-dependent 23S rib 98.0 4.7E-05 1E-09 70.7 10.8 136 18-177 228-373 (378)
10 PRK09489 rsmC 16S ribosomal RN 98.0 5.2E-05 1.1E-09 69.3 10.8 115 19-159 197-312 (342)
11 PRK14901 16S rRNA methyltransf 98.0 0.00013 2.7E-09 68.5 13.3 153 15-173 249-409 (434)
12 TIGR01177 conserved hypothetic 97.9 0.00015 3.2E-09 65.5 12.5 139 16-189 180-320 (329)
13 PRK14902 16S rRNA methyltransf 97.9 0.00022 4.8E-09 66.9 13.9 163 3-174 235-405 (444)
14 PRK10901 16S rRNA methyltransf 97.9 0.00017 3.7E-09 67.4 12.9 162 3-174 229-398 (427)
15 COG2813 RsmC 16S RNA G1207 met 97.9 0.00019 4.1E-09 64.7 11.4 138 14-176 154-298 (300)
16 PRK14968 putative methyltransf 97.8 0.0012 2.6E-08 53.5 14.9 141 17-174 22-170 (188)
17 TIGR03533 L3_gln_methyl protei 97.8 0.00058 1.3E-08 60.7 13.5 137 18-171 121-268 (284)
18 PRK14967 putative methyltransf 97.7 0.0013 2.8E-08 55.9 14.2 143 16-174 34-181 (223)
19 KOG4174 Uncharacterized conser 97.7 4.6E-06 9.9E-11 73.5 -2.1 124 30-177 1-124 (282)
20 COG1041 Predicted DNA modifica 97.6 0.00045 9.8E-09 63.4 10.5 137 18-189 197-335 (347)
21 PRK14904 16S rRNA methyltransf 97.6 0.001 2.2E-08 62.6 13.2 148 16-174 248-403 (445)
22 PRK00107 gidB 16S rRNA methylt 97.6 0.0019 4.2E-08 54.2 13.4 128 17-179 44-171 (187)
23 PRK14903 16S rRNA methyltransf 97.6 0.0016 3.4E-08 61.3 14.1 163 3-174 222-392 (431)
24 PRK09328 N5-glutamine S-adenos 97.6 0.0016 3.4E-08 56.4 13.2 144 16-174 106-259 (275)
25 PRK00121 trmB tRNA (guanine-N( 97.6 0.00019 4.1E-09 60.5 7.1 137 18-173 40-177 (202)
26 TIGR00563 rsmB ribosomal RNA s 97.6 0.0016 3.4E-08 61.0 13.6 159 3-172 223-392 (426)
27 TIGR03704 PrmC_rel_meth putati 97.6 0.0012 2.7E-08 57.6 11.8 139 18-173 86-236 (251)
28 TIGR00138 gidB 16S rRNA methyl 97.5 0.0013 2.9E-08 54.7 11.1 134 16-181 40-173 (181)
29 TIGR03534 RF_mod_PrmC protein- 97.5 0.002 4.4E-08 54.7 12.5 140 18-174 87-238 (251)
30 PRK11805 N5-glutamine S-adenos 97.5 0.0021 4.5E-08 57.9 13.1 137 20-173 135-282 (307)
31 PRK14121 tRNA (guanine-N(7)-)- 97.5 0.00053 1.2E-08 64.0 9.3 135 18-172 122-256 (390)
32 TIGR02752 MenG_heptapren 2-hep 97.5 0.006 1.3E-07 51.5 14.3 109 15-149 42-150 (231)
33 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0019 4.2E-08 64.2 12.8 156 11-184 531-688 (702)
34 PF02353 CMAS: Mycolic acid cy 97.4 0.0014 3E-08 58.2 10.6 133 15-177 59-217 (273)
35 PRK01581 speE spermidine synth 97.4 0.0022 4.7E-08 59.6 12.0 146 16-180 148-300 (374)
36 PF12847 Methyltransf_18: Meth 97.4 0.0014 3E-08 48.7 8.8 110 18-150 1-111 (112)
37 PRK14966 unknown domain/N5-glu 97.4 0.0036 7.8E-08 59.1 13.4 143 17-175 250-403 (423)
38 PRK01544 bifunctional N5-gluta 97.3 0.0032 6.9E-08 60.5 12.5 141 19-174 139-290 (506)
39 PRK03612 spermidine synthase; 97.3 0.0011 2.4E-08 63.8 9.2 137 17-171 296-438 (521)
40 smart00828 PKS_MT Methyltransf 97.3 0.0059 1.3E-07 51.3 12.3 133 20-181 1-148 (224)
41 PRK11188 rrmJ 23S rRNA methylt 97.2 0.0066 1.4E-07 51.6 12.1 118 15-155 48-170 (209)
42 PF13847 Methyltransf_31: Meth 97.2 0.0044 9.5E-08 49.2 9.6 111 17-152 2-112 (152)
43 PRK04457 spermidine synthase; 97.2 0.0013 2.9E-08 57.8 7.2 117 17-155 65-182 (262)
44 PRK11873 arsM arsenite S-adeno 97.1 0.028 6.2E-07 48.8 14.9 138 15-178 74-231 (272)
45 TIGR00536 hemK_fam HemK family 97.1 0.0062 1.3E-07 53.9 10.8 138 20-174 116-266 (284)
46 PRK15128 23S rRNA m(5)C1962 me 97.0 0.0072 1.6E-07 56.5 11.1 158 12-184 214-377 (396)
47 TIGR00438 rrmJ cell division p 97.0 0.0092 2E-07 49.2 10.4 111 16-150 30-146 (188)
48 PRK08287 cobalt-precorrin-6Y C 96.9 0.015 3.2E-07 47.9 11.0 127 15-175 28-154 (187)
49 PF02390 Methyltransf_4: Putat 96.9 0.0012 2.5E-08 55.9 4.1 149 8-174 6-157 (195)
50 PLN02233 ubiquinone biosynthes 96.9 0.041 9E-07 48.1 14.1 110 15-149 70-181 (261)
51 PRK00216 ubiE ubiquinone/menaq 96.9 0.02 4.4E-07 47.8 11.7 106 18-148 51-156 (239)
52 PRK00811 spermidine synthase; 96.9 0.0084 1.8E-07 53.3 9.7 111 17-149 75-190 (283)
53 COG0144 Sun tRNA and rRNA cyto 96.9 0.068 1.5E-06 49.2 15.9 123 46-174 183-314 (355)
54 TIGR02469 CbiT precorrin-6Y C5 96.9 0.035 7.6E-07 41.4 11.7 106 16-150 17-122 (124)
55 TIGR00417 speE spermidine synt 96.8 0.0073 1.6E-07 53.1 9.0 111 17-149 71-185 (270)
56 TIGR00479 rumA 23S rRNA (uraci 96.8 0.0088 1.9E-07 55.8 9.6 138 17-188 291-429 (431)
57 PRK00377 cbiT cobalt-precorrin 96.8 0.042 9.1E-07 45.8 12.6 130 15-174 37-167 (198)
58 PF01861 DUF43: Protein of unk 96.8 0.033 7.3E-07 49.0 12.3 130 18-176 44-177 (243)
59 cd02440 AdoMet_MTases S-adenos 96.7 0.021 4.6E-07 39.7 9.2 103 21-149 1-103 (107)
60 PF01170 UPF0020: Putative RNA 96.7 0.027 5.7E-07 46.8 11.2 110 24-149 36-149 (179)
61 COG2890 HemK Methylase of poly 96.7 0.035 7.6E-07 49.5 12.2 138 21-174 113-260 (280)
62 PRK06922 hypothetical protein; 96.6 0.013 2.9E-07 58.0 10.1 122 13-149 413-536 (677)
63 PLN02244 tocopherol O-methyltr 96.6 0.062 1.3E-06 48.9 13.8 142 17-187 117-288 (340)
64 PTZ00098 phosphoethanolamine N 96.5 0.07 1.5E-06 46.8 13.0 105 15-149 49-155 (263)
65 KOG2904 Predicted methyltransf 96.5 0.044 9.5E-07 49.5 11.4 122 20-151 150-286 (328)
66 PRK11933 yebU rRNA (cytosine-C 96.5 0.048 1E-06 52.2 12.4 155 3-168 96-261 (470)
67 PLN02490 MPBQ/MSBQ methyltrans 96.4 0.081 1.8E-06 48.6 13.0 139 17-186 112-265 (340)
68 PRK05134 bifunctional 3-demeth 96.4 0.089 1.9E-06 44.5 12.3 128 17-175 47-203 (233)
69 PLN02366 spermidine synthase 96.4 0.035 7.7E-07 50.2 10.3 109 17-147 90-203 (308)
70 PRK01544 bifunctional N5-gluta 96.3 0.018 3.9E-07 55.4 8.4 136 18-174 347-485 (506)
71 PRK13168 rumA 23S rRNA m(5)U19 96.3 0.079 1.7E-06 49.9 12.4 138 17-189 296-434 (443)
72 PRK08317 hypothetical protein; 96.2 0.093 2E-06 43.5 11.6 109 14-150 15-124 (241)
73 PF02475 Met_10: Met-10+ like- 96.2 0.013 2.8E-07 50.0 6.4 100 15-147 98-199 (200)
74 PRK11036 putative S-adenosyl-L 96.2 0.069 1.5E-06 46.2 11.0 107 17-150 43-149 (255)
75 PRK11727 23S rRNA mA1618 methy 96.2 0.027 5.9E-07 51.4 8.7 130 14-149 110-246 (321)
76 PRK04266 fibrillarin; Provisio 96.2 0.25 5.4E-06 42.7 14.3 136 14-178 68-211 (226)
77 COG0220 Predicted S-adenosylme 96.2 0.028 6E-07 48.9 8.4 140 9-167 37-180 (227)
78 PRK11207 tellurite resistance 96.1 0.085 1.8E-06 44.1 10.6 108 15-150 27-135 (197)
79 PRK13944 protein-L-isoaspartat 96.1 0.11 2.3E-06 43.7 11.2 105 17-152 71-175 (205)
80 TIGR01934 MenG_MenH_UbiE ubiqu 96.1 0.078 1.7E-06 43.7 10.2 105 17-149 38-142 (223)
81 TIGR00080 pimt protein-L-isoas 96.0 0.13 2.7E-06 43.5 11.5 105 16-152 75-179 (215)
82 TIGR00740 methyltransferase, p 96.0 0.1 2.3E-06 44.5 10.8 108 17-149 52-160 (239)
83 PF13649 Methyltransf_25: Meth 95.9 0.015 3.3E-07 42.9 4.6 98 22-144 1-101 (101)
84 PRK15451 tRNA cmo(5)U34 methyl 95.9 0.087 1.9E-06 45.5 10.1 107 17-149 55-163 (247)
85 PHA03411 putative methyltransf 95.9 0.098 2.1E-06 47.0 10.5 134 18-174 64-211 (279)
86 COG2230 Cfa Cyclopropane fatty 95.7 0.12 2.6E-06 46.5 10.5 137 15-181 69-227 (283)
87 TIGR02716 C20_methyl_CrtF C-20 95.5 0.23 4.9E-06 44.1 11.6 107 15-149 146-253 (306)
88 PF08241 Methyltransf_11: Meth 95.5 0.11 2.4E-06 36.5 7.8 95 23-148 1-95 (95)
89 PRK11705 cyclopropane fatty ac 95.4 0.11 2.4E-06 48.3 9.6 101 15-149 164-266 (383)
90 COG2226 UbiE Methylase involve 95.4 0.11 2.5E-06 45.5 8.9 108 18-155 51-160 (238)
91 PRK03522 rumB 23S rRNA methylu 95.4 0.25 5.4E-06 44.4 11.3 133 19-190 174-307 (315)
92 TIGR00477 tehB tellurite resis 95.3 0.14 3E-06 42.8 9.0 101 18-148 30-131 (195)
93 PRK10909 rsmD 16S rRNA m(2)G96 95.3 0.11 2.4E-06 44.1 8.4 110 15-152 50-161 (199)
94 PLN02396 hexaprenyldihydroxybe 95.3 0.28 6.1E-06 44.7 11.4 127 18-175 131-287 (322)
95 PTZ00146 fibrillarin; Provisio 95.3 1 2.3E-05 40.7 14.9 135 14-178 128-272 (293)
96 PF01564 Spermine_synth: Sperm 95.3 0.026 5.7E-07 49.2 4.6 134 17-170 75-213 (246)
97 COG1092 Predicted SAM-dependen 95.2 0.14 3E-06 48.0 9.5 159 11-187 210-377 (393)
98 TIGR01983 UbiG ubiquinone bios 95.1 0.34 7.3E-06 40.4 10.8 135 18-187 45-210 (224)
99 COG2265 TrmA SAM-dependent met 95.1 0.12 2.5E-06 49.1 8.7 130 23-188 300-429 (432)
100 PRK14103 trans-aconitate 2-met 95.1 0.26 5.6E-06 42.5 10.1 101 15-150 26-126 (255)
101 PHA03412 putative methyltransf 95.1 0.18 4E-06 44.3 9.2 106 19-144 50-157 (241)
102 PLN02336 phosphoethanolamine N 95.0 0.3 6.6E-06 45.9 11.1 131 16-177 264-414 (475)
103 KOG1122 tRNA and rRNA cytosine 94.8 0.68 1.5E-05 44.0 12.7 140 29-179 255-402 (460)
104 PRK01683 trans-aconitate 2-met 94.7 0.28 6.2E-06 42.1 9.6 104 14-150 27-130 (258)
105 TIGR02987 met_A_Alw26 type II 94.7 0.24 5.2E-06 47.5 9.9 88 19-111 32-126 (524)
106 TIGR02072 BioC biotin biosynth 94.6 0.24 5.1E-06 41.2 8.5 101 19-150 35-135 (240)
107 KOG4300 Predicted methyltransf 94.6 0.12 2.5E-06 45.1 6.6 113 20-162 78-194 (252)
108 PF01209 Ubie_methyltran: ubiE 94.6 0.11 2.4E-06 45.0 6.5 107 15-149 44-152 (233)
109 PRK00517 prmA ribosomal protei 94.6 1.4 3.1E-05 38.0 13.5 119 17-175 118-236 (250)
110 PF10672 Methyltrans_SAM: S-ad 94.5 0.014 2.9E-07 52.5 0.7 153 10-185 115-273 (286)
111 TIGR02085 meth_trns_rumB 23S r 94.5 0.5 1.1E-05 43.6 11.0 130 19-189 234-366 (374)
112 PRK05031 tRNA (uracil-5-)-meth 94.4 0.25 5.5E-06 45.4 9.0 131 20-189 208-353 (362)
113 PRK13942 protein-L-isoaspartat 94.4 0.68 1.5E-05 39.2 10.8 105 16-152 74-178 (212)
114 COG2519 GCD14 tRNA(1-methylade 94.3 0.66 1.4E-05 41.2 10.8 103 16-149 92-194 (256)
115 KOG3191 Predicted N6-DNA-methy 94.2 0.77 1.7E-05 39.3 10.5 124 20-155 45-174 (209)
116 PF13489 Methyltransf_23: Meth 93.9 0.36 7.7E-06 37.5 7.7 120 16-174 20-160 (161)
117 PRK00312 pcm protein-L-isoaspa 93.9 0.98 2.1E-05 37.8 10.8 102 15-151 75-176 (212)
118 COG3963 Phospholipid N-methylt 93.9 0.43 9.3E-06 40.3 8.3 110 13-149 43-156 (194)
119 PLN02336 phosphoethanolamine N 93.8 0.65 1.4E-05 43.7 10.6 108 15-149 34-141 (475)
120 PLN02781 Probable caffeoyl-CoA 93.7 0.47 1E-05 41.0 8.8 111 15-149 65-177 (234)
121 PLN02823 spermine synthase 93.6 0.37 8E-06 44.2 8.2 112 18-148 103-218 (336)
122 PF05958 tRNA_U5-meth_tr: tRNA 93.5 0.17 3.7E-06 46.4 6.0 128 23-190 203-344 (352)
123 PRK00536 speE spermidine synth 93.4 0.56 1.2E-05 41.7 8.9 97 17-148 71-169 (262)
124 PRK11524 putative methyltransf 93.4 0.36 7.8E-06 42.7 7.7 91 78-176 10-102 (284)
125 TIGR00452 methyltransferase, p 93.4 0.98 2.1E-05 41.0 10.5 130 17-177 120-273 (314)
126 TIGR02143 trmA_only tRNA (urac 93.3 0.61 1.3E-05 42.8 9.3 132 20-190 199-345 (353)
127 PRK12335 tellurite resistance 93.3 0.75 1.6E-05 40.6 9.5 103 17-148 119-221 (287)
128 TIGR02021 BchM-ChlM magnesium 93.2 1.2 2.6E-05 37.3 10.4 132 16-178 53-207 (219)
129 COG2520 Predicted methyltransf 93.2 0.29 6.3E-06 45.1 6.9 123 15-170 185-313 (341)
130 COG2518 Pcm Protein-L-isoaspar 93.2 0.41 8.9E-06 41.3 7.4 76 16-104 70-145 (209)
131 TIGR00406 prmA ribosomal prote 93.2 1.7 3.7E-05 38.5 11.6 100 18-149 159-258 (288)
132 PLN02672 methionine S-methyltr 93.1 2.2 4.8E-05 45.0 13.8 141 19-174 119-300 (1082)
133 PRK13943 protein-L-isoaspartat 92.9 1.6 3.5E-05 39.8 11.2 103 16-150 78-180 (322)
134 PF08704 GCD14: tRNA methyltra 92.7 0.69 1.5E-05 40.7 8.3 107 16-149 38-145 (247)
135 PLN02476 O-methyltransferase 92.5 0.48 1E-05 42.4 7.2 111 14-149 114-227 (278)
136 PF01135 PCMT: Protein-L-isoas 92.4 0.4 8.6E-06 41.0 6.3 107 16-154 70-176 (209)
137 PRK04338 N(2),N(2)-dimethylgua 92.3 0.92 2E-05 42.3 9.1 100 20-152 59-160 (382)
138 PRK07580 Mg-protoporphyrin IX 92.1 4.7 0.0001 33.5 12.4 133 16-181 61-218 (230)
139 PRK06202 hypothetical protein; 92.1 3.2 7E-05 35.1 11.5 77 17-106 59-138 (232)
140 PRK07402 precorrin-6B methylas 92.0 2.1 4.5E-05 35.3 10.0 105 15-149 37-141 (196)
141 PRK15068 tRNA mo(5)U34 methylt 91.9 4.5 9.7E-05 36.6 12.8 132 18-180 122-277 (322)
142 COG2227 UbiG 2-polyprenyl-3-me 91.5 0.54 1.2E-05 41.4 6.2 102 18-149 59-160 (243)
143 COG4122 Predicted O-methyltran 91.3 1 2.2E-05 39.0 7.7 109 14-149 55-165 (219)
144 COG2263 Predicted RNA methylas 91.3 7.3 0.00016 33.4 12.6 120 18-175 45-166 (198)
145 PF10294 Methyltransf_16: Puta 90.9 0.35 7.7E-06 39.7 4.2 115 14-153 41-159 (173)
146 PF07021 MetW: Methionine bios 90.8 9.2 0.0002 32.7 12.7 128 18-181 13-171 (193)
147 PF06080 DUF938: Protein of un 90.8 3.1 6.8E-05 35.7 10.0 140 16-176 22-191 (204)
148 PF08242 Methyltransf_12: Meth 90.7 0.22 4.8E-06 36.2 2.6 99 23-146 1-99 (99)
149 PRK10258 biotin biosynthesis p 90.6 2.8 6E-05 35.8 9.7 100 17-150 41-140 (251)
150 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.3 0.33 7.2E-06 43.2 3.8 149 16-174 83-245 (283)
151 COG0421 SpeE Spermidine syntha 90.2 1.2 2.6E-05 39.9 7.4 110 20-149 78-189 (282)
152 COG4262 Predicted spermidine s 90.0 4.1 8.8E-05 38.6 10.7 133 18-172 289-431 (508)
153 TIGR02081 metW methionine bios 89.9 7 0.00015 32.1 11.3 72 17-106 12-84 (194)
154 smart00138 MeTrc Methyltransfe 89.8 2.8 6.1E-05 36.8 9.3 120 17-154 98-246 (264)
155 PRK11088 rrmA 23S rRNA methylt 89.8 4.4 9.6E-05 35.3 10.5 108 18-163 85-192 (272)
156 TIGR03840 TMPT_Se_Te thiopurin 89.7 8.6 0.00019 32.7 11.9 112 17-151 33-154 (213)
157 TIGR00095 RNA methyltransferas 89.0 3.6 7.8E-05 34.3 8.9 115 15-152 46-161 (189)
158 smart00650 rADc Ribosomal RNA 88.8 5.6 0.00012 32.0 9.7 76 17-107 12-87 (169)
159 KOG1270 Methyltransferases [Co 88.7 1.9 4.2E-05 38.7 7.3 103 19-149 90-194 (282)
160 COG2521 Predicted archaeal met 87.7 2.1 4.6E-05 38.1 6.9 85 75-175 186-275 (287)
161 PRK13699 putative methylase; P 87.6 1.9 4.2E-05 37.2 6.6 95 77-180 3-99 (227)
162 PRK06940 short chain dehydroge 86.9 4.3 9.4E-05 35.0 8.5 77 20-106 3-85 (275)
163 TIGR03438 probable methyltrans 86.7 8.1 0.00018 34.4 10.3 114 17-151 62-178 (301)
164 PLN03075 nicotianamine synthas 86.7 12 0.00026 33.9 11.4 112 18-153 123-236 (296)
165 PLN02232 ubiquinone biosynthes 86.6 2 4.4E-05 34.6 5.9 56 75-151 27-82 (160)
166 PF00891 Methyltransf_2: O-met 86.5 7.4 0.00016 33.0 9.6 102 13-149 95-198 (241)
167 PF06325 PrmA: Ribosomal prote 85.9 11 0.00024 34.0 10.8 120 17-175 160-281 (295)
168 TIGR00308 TRM1 tRNA(guanine-26 85.1 6.2 0.00013 36.8 8.9 101 21-152 47-149 (374)
169 PLN02589 caffeoyl-CoA O-methyl 84.7 5.9 0.00013 34.8 8.2 108 15-148 76-188 (247)
170 PF06962 rRNA_methylase: Putat 84.4 3.3 7.2E-05 33.5 6.0 92 49-155 3-97 (140)
171 KOG3420 Predicted RNA methylas 83.3 1 2.3E-05 37.4 2.7 71 23-108 55-125 (185)
172 COG2264 PrmA Ribosomal protein 82.5 26 0.00056 31.9 11.6 123 18-175 162-286 (300)
173 TIGR03587 Pse_Me-ase pseudamin 82.1 14 0.0003 31.1 9.2 74 16-106 41-114 (204)
174 PF01555 N6_N4_Mtase: DNA meth 81.5 9.2 0.0002 31.1 7.8 82 98-181 1-87 (231)
175 KOG1540 Ubiquinone biosynthesi 81.0 12 0.00026 33.8 8.6 113 8-151 91-215 (296)
176 PRK06128 oxidoreductase; Provi 80.3 21 0.00046 31.1 10.1 80 19-106 55-143 (300)
177 PF01596 Methyltransf_3: O-met 79.7 1.7 3.8E-05 37.0 2.9 110 16-149 43-154 (205)
178 KOG1562 Spermidine synthase [A 78.2 4.9 0.00011 36.8 5.5 129 16-167 119-248 (337)
179 COG2242 CobL Precorrin-6B meth 77.0 45 0.00098 28.3 11.0 121 16-170 32-153 (187)
180 PF07669 Eco57I: Eco57I restri 76.9 3.4 7.4E-05 31.2 3.5 50 96-149 1-51 (106)
181 PRK13656 trans-2-enoyl-CoA red 76.1 7.3 0.00016 36.8 6.2 88 17-105 39-139 (398)
182 PRK02842 light-independent pro 75.4 3.2 6.9E-05 39.0 3.6 80 15-104 286-367 (427)
183 PF02384 N6_Mtase: N-6 DNA Met 75.4 2.5 5.4E-05 37.3 2.8 88 95-185 123-220 (311)
184 PRK09489 rsmC 16S ribosomal RN 75.2 20 0.00043 32.9 8.7 94 17-150 18-112 (342)
185 PRK14896 ksgA 16S ribosomal RN 74.9 19 0.00042 31.2 8.2 77 16-109 27-103 (258)
186 PRK06701 short chain dehydroge 74.4 44 0.00095 29.1 10.4 122 19-149 46-181 (290)
187 KOG1661 Protein-L-isoaspartate 74.2 20 0.00044 31.4 7.9 107 16-152 80-195 (237)
188 PF13578 Methyltransf_24: Meth 72.5 1.2 2.7E-05 32.8 0.1 100 23-148 1-103 (106)
189 PRK12744 short chain dehydroge 72.2 30 0.00065 29.0 8.6 124 19-149 8-144 (257)
190 KOG1271 Methyltransferases [Ge 72.1 65 0.0014 27.9 10.4 134 19-177 68-205 (227)
191 KOG2915 tRNA(1-methyladenosine 70.6 21 0.00046 32.5 7.4 84 16-107 103-187 (314)
192 PTZ00338 dimethyladenosine tra 69.7 26 0.00056 31.4 8.0 81 15-110 33-114 (294)
193 PRK13255 thiopurine S-methyltr 69.3 71 0.0015 27.2 10.9 112 17-151 36-157 (218)
194 COG0742 N6-adenine-specific me 69.2 22 0.00047 30.2 7.0 117 12-152 36-156 (187)
195 TIGR00755 ksgA dimethyladenosi 69.0 18 0.00038 31.2 6.6 77 15-108 26-105 (253)
196 PF05148 Methyltransf_8: Hypot 69.0 9.6 0.00021 33.2 4.8 76 82-175 108-183 (219)
197 PF08468 MTS_N: Methyltransfer 68.7 14 0.00031 30.1 5.6 92 18-149 12-104 (155)
198 PRK11783 rlmL 23S rRNA m(2)G24 68.7 26 0.00057 35.2 8.5 58 47-109 258-315 (702)
199 TIGR01279 DPOR_bchN light-inde 68.5 4.9 0.00011 37.5 3.2 83 15-108 270-358 (407)
200 PF05891 Methyltransf_PK: AdoM 67.9 6.7 0.00015 34.1 3.6 95 75-187 104-214 (218)
201 PRK07985 oxidoreductase; Provi 67.6 81 0.0018 27.4 10.6 80 19-106 49-137 (294)
202 PF05971 Methyltransf_10: Prot 67.6 8.9 0.00019 34.8 4.5 86 19-111 103-191 (299)
203 PRK05599 hypothetical protein; 67.4 14 0.0003 31.2 5.5 75 21-105 2-85 (246)
204 PF00106 adh_short: short chai 67.0 21 0.00046 27.5 6.2 82 20-109 1-92 (167)
205 PRK00050 16S rRNA m(4)C1402 me 66.8 8.5 0.00018 34.8 4.3 29 121-149 205-236 (296)
206 COG0116 Predicted N6-adenine-s 66.2 37 0.00079 32.0 8.4 87 48-149 257-343 (381)
207 PF03848 TehB: Tellurite resis 65.1 35 0.00077 28.9 7.5 105 14-150 26-134 (192)
208 PRK12746 short chain dehydroge 63.5 82 0.0018 26.1 9.5 119 19-148 6-144 (254)
209 cd00550 ArsA_ATPase Oxyanion-t 63.3 7.5 0.00016 33.7 3.2 86 18-110 27-137 (254)
210 KOG2198 tRNA cytosine-5-methyl 63.1 38 0.00082 31.8 7.8 89 75-163 209-309 (375)
211 PRK12937 short chain dehydroge 62.8 72 0.0016 26.1 9.0 78 19-105 5-91 (245)
212 PRK07806 short chain dehydroge 62.1 55 0.0012 27.1 8.1 119 19-149 6-134 (248)
213 PF05185 PRMT5: PRMT5 arginine 62.1 31 0.00067 32.9 7.3 101 18-146 186-293 (448)
214 COG0275 Predicted S-adenosylme 61.9 6.6 0.00014 35.9 2.6 28 122-149 214-244 (314)
215 KOG2361 Predicted methyltransf 61.9 30 0.00066 30.8 6.6 106 21-149 74-182 (264)
216 PRK10309 galactitol-1-phosphat 61.6 75 0.0016 28.0 9.3 99 15-149 157-259 (347)
217 PRK06124 gluconate 5-dehydroge 60.9 72 0.0016 26.5 8.7 78 18-105 10-96 (256)
218 PF08659 KR: KR domain; Inter 60.1 54 0.0012 26.6 7.6 62 21-89 2-67 (181)
219 PRK06172 short chain dehydroge 59.3 1E+02 0.0022 25.6 9.3 78 19-106 7-93 (253)
220 TIGR00006 S-adenosyl-methyltra 59.0 13 0.00028 33.8 4.0 29 121-149 209-240 (305)
221 PRK10669 putative cation:proto 58.8 15 0.00032 35.6 4.5 78 14-106 412-490 (558)
222 PF03602 Cons_hypoth95: Conser 58.1 6.1 0.00013 32.9 1.6 113 17-153 41-156 (183)
223 cd01979 Pchlide_reductase_N Pc 57.9 10 0.00023 35.1 3.3 76 16-104 273-352 (396)
224 PF03291 Pox_MCEL: mRNA cappin 57.7 18 0.00039 33.1 4.7 110 18-151 62-187 (331)
225 cd02008 TPP_IOR_alpha Thiamine 57.6 15 0.00032 30.0 3.8 37 18-54 69-107 (178)
226 PF10237 N6-adenineMlase: Prob 57.2 31 0.00068 28.4 5.6 39 95-149 84-122 (162)
227 KOG3045 Predicted RNA methylas 57.1 33 0.00072 31.2 6.1 46 129-174 243-288 (325)
228 COG0003 ArsA Predicted ATPase 56.5 14 0.00031 33.7 3.9 89 19-110 30-138 (322)
229 cd00316 Oxidoreductase_nitroge 56.1 22 0.00047 32.3 5.0 79 16-104 276-355 (399)
230 PF07368 DUF1487: Protein of u 56.1 1E+02 0.0022 26.8 8.8 80 22-108 8-107 (215)
231 COG2099 CobK Precorrin-6x redu 55.8 32 0.00069 30.7 5.7 62 19-85 2-74 (257)
232 PRK03659 glutathione-regulated 55.1 16 0.00035 35.9 4.2 74 19-107 400-474 (601)
233 PF05401 NodS: Nodulation prot 54.8 18 0.0004 31.1 4.0 121 14-163 39-159 (201)
234 PRK09496 trkA potassium transp 54.8 30 0.00066 31.9 5.8 75 18-107 230-307 (453)
235 TIGR02822 adh_fam_2 zinc-bindi 54.1 1.5E+02 0.0032 26.2 10.0 91 15-149 162-253 (329)
236 PRK06079 enoyl-(acyl carrier p 53.1 1.4E+02 0.003 25.1 9.8 78 18-105 6-91 (252)
237 PRK07231 fabG 3-ketoacyl-(acyl 53.1 1.3E+02 0.0027 24.7 9.2 79 18-106 4-90 (251)
238 PF00070 Pyr_redox: Pyridine n 52.3 21 0.00046 24.9 3.4 64 21-89 1-68 (80)
239 PRK08340 glucose-1-dehydrogena 51.6 23 0.00049 29.9 4.1 78 20-106 1-85 (259)
240 PRK03562 glutathione-regulated 50.5 22 0.00047 35.2 4.3 70 19-103 400-470 (621)
241 PRK07478 short chain dehydroge 49.2 1.5E+02 0.0033 24.5 8.9 79 19-107 6-93 (254)
242 PRK00274 ksgA 16S ribosomal RN 49.0 88 0.0019 27.3 7.5 78 15-108 39-116 (272)
243 PF03610 EIIA-man: PTS system 48.7 32 0.0007 25.9 4.2 59 21-81 1-65 (116)
244 PF14584 DUF4446: Protein of u 47.1 3.6 7.9E-05 33.6 -1.4 28 28-57 96-123 (151)
245 PRK12770 putative glutamate sy 47.0 1.1E+02 0.0023 27.5 7.9 65 19-88 172-237 (352)
246 TIGR00824 EIIA-man PTS system, 46.8 43 0.00093 25.7 4.6 57 21-82 3-67 (116)
247 PRK07904 short chain dehydroge 45.4 81 0.0017 26.7 6.6 84 17-109 6-99 (253)
248 PRK05866 short chain dehydroge 45.3 40 0.00087 29.4 4.8 77 18-104 39-124 (293)
249 COG4130 Predicted sugar epimer 44.8 68 0.0015 28.4 5.9 63 128-190 18-117 (272)
250 PLN02585 magnesium protoporphy 44.6 2.4E+02 0.0053 25.5 12.7 74 18-106 144-221 (315)
251 CHL00076 chlB photochlorophyll 44.4 24 0.00052 34.2 3.5 33 15-49 301-335 (513)
252 PRK09496 trkA potassium transp 44.4 42 0.00091 31.0 5.0 30 20-51 1-31 (453)
253 PRK13530 arsenate reductase; P 44.4 96 0.0021 24.2 6.4 54 19-78 3-59 (133)
254 PRK07889 enoyl-(acyl carrier p 44.2 1.9E+02 0.0042 24.3 9.2 79 19-105 7-93 (256)
255 PRK09880 L-idonate 5-dehydroge 44.0 1.1E+02 0.0024 27.0 7.6 96 18-149 169-265 (343)
256 PRK06603 enoyl-(acyl carrier p 43.8 2E+02 0.0043 24.3 9.6 80 18-106 7-95 (260)
257 cd08242 MDR_like Medium chain 43.1 1.3E+02 0.0029 25.8 7.7 68 15-103 152-220 (319)
258 cd00006 PTS_IIA_man PTS_IIA, P 42.9 57 0.0012 24.9 4.8 60 21-82 2-66 (122)
259 PRK06914 short chain dehydroge 42.8 2E+02 0.0044 24.2 9.2 78 19-106 3-90 (280)
260 PTZ00318 NADH dehydrogenase-li 42.7 78 0.0017 29.3 6.5 87 20-106 174-277 (424)
261 PRK14106 murD UDP-N-acetylmura 42.4 1.4E+02 0.0031 27.6 8.2 74 18-108 4-78 (450)
262 PRK07454 short chain dehydroge 42.3 45 0.00097 27.5 4.5 78 17-104 4-90 (241)
263 cd08230 glucose_DH Glucose deh 41.3 1.4E+02 0.003 26.5 7.8 94 17-148 171-267 (355)
264 PRK06181 short chain dehydroge 41.2 2E+02 0.0042 24.0 8.3 75 20-104 2-85 (263)
265 PF00107 ADH_zinc_N: Zinc-bind 41.1 21 0.00046 26.6 2.1 82 32-149 5-88 (130)
266 PF03059 NAS: Nicotianamine sy 40.6 1E+02 0.0022 27.7 6.6 111 19-153 121-233 (276)
267 KOG1198 Zinc-binding oxidoredu 40.4 50 0.0011 30.4 4.8 46 15-61 154-201 (347)
268 PRK12742 oxidoreductase; Provi 40.3 1.8E+02 0.0039 23.6 7.8 74 19-105 6-83 (237)
269 PF01795 Methyltransf_5: MraW 40.1 18 0.00038 33.1 1.7 29 121-149 210-241 (310)
270 PRK05650 short chain dehydroge 39.7 39 0.00084 28.6 3.7 77 20-106 1-86 (270)
271 cd02006 TPP_Gcl Thiamine pyrop 39.4 31 0.00068 28.6 3.1 35 18-54 75-112 (202)
272 PRK04148 hypothetical protein; 39.0 1.2E+02 0.0026 24.3 6.2 68 18-106 16-86 (134)
273 cd02015 TPP_AHAS Thiamine pyro 39.0 38 0.00083 27.6 3.5 35 18-54 68-105 (186)
274 PRK08217 fabG 3-ketoacyl-(acyl 38.8 44 0.00095 27.5 3.9 79 18-106 4-91 (253)
275 PRK05867 short chain dehydroge 38.8 50 0.0011 27.6 4.3 78 18-105 8-94 (253)
276 PF02775 TPP_enzyme_C: Thiamin 38.7 21 0.00046 28.0 1.8 37 18-54 46-83 (153)
277 TIGR01316 gltA glutamate synth 38.5 1E+02 0.0022 28.9 6.7 65 18-88 271-336 (449)
278 PRK12831 putative oxidoreducta 38.5 73 0.0016 30.1 5.7 66 17-88 279-345 (464)
279 PRK06953 short chain dehydroge 38.1 80 0.0017 25.8 5.3 73 20-107 2-80 (222)
280 PRK08213 gluconate 5-dehydroge 37.8 41 0.00089 28.1 3.6 79 18-106 11-98 (259)
281 PRK12859 3-ketoacyl-(acyl-carr 37.8 62 0.0013 27.3 4.7 89 18-106 5-105 (256)
282 PRK05785 hypothetical protein; 37.6 1.1E+02 0.0025 25.9 6.3 71 17-107 50-120 (226)
283 PRK12481 2-deoxy-D-gluconate 3 37.4 64 0.0014 27.1 4.7 76 18-105 7-91 (251)
284 TIGR00345 arsA arsenite-activa 37.1 45 0.00098 29.4 3.9 90 18-110 12-125 (284)
285 PRK08177 short chain dehydroge 36.9 61 0.0013 26.6 4.4 75 20-108 2-82 (225)
286 PF08003 Methyltransf_9: Prote 36.6 2.1E+02 0.0046 26.3 8.1 129 18-177 115-267 (315)
287 PRK08594 enoyl-(acyl carrier p 36.2 2.6E+02 0.0057 23.5 9.9 80 18-105 6-95 (257)
288 PRK06139 short chain dehydroge 35.7 48 0.001 29.8 3.9 78 18-105 6-92 (330)
289 PRK07074 short chain dehydroge 35.5 50 0.0011 27.5 3.8 76 19-105 2-85 (257)
290 PRK08862 short chain dehydroge 35.3 2.6E+02 0.0057 23.3 10.1 78 19-105 5-91 (227)
291 PRK06114 short chain dehydroge 35.3 92 0.002 26.0 5.3 80 18-106 7-95 (254)
292 PRK06505 enoyl-(acyl carrier p 35.2 2.9E+02 0.0062 23.6 8.8 77 18-105 6-93 (271)
293 PRK12939 short chain dehydroge 35.1 78 0.0017 26.0 4.8 79 17-105 5-92 (250)
294 PRK07666 fabG 3-ketoacyl-(acyl 35.0 69 0.0015 26.3 4.5 78 19-106 7-93 (239)
295 PRK01438 murD UDP-N-acetylmura 34.9 1.8E+02 0.0039 27.3 7.7 68 19-103 16-84 (480)
296 PRK12824 acetoacetyl-CoA reduc 34.8 52 0.0011 27.0 3.7 77 20-105 3-88 (245)
297 COG1743 Adenine-specific DNA m 34.5 84 0.0018 32.5 5.6 58 124-181 562-620 (875)
298 PRK11749 dihydropyrimidine deh 34.4 1E+02 0.0022 28.8 5.9 66 18-88 272-338 (457)
299 PRK12429 3-hydroxybutyrate deh 34.3 66 0.0014 26.6 4.3 78 19-106 4-90 (258)
300 PRK08085 gluconate 5-dehydroge 34.1 2.7E+02 0.0059 23.0 9.4 79 18-106 8-95 (254)
301 PRK06194 hypothetical protein; 34.1 74 0.0016 27.0 4.6 79 19-107 6-93 (287)
302 TIGR01832 kduD 2-deoxy-D-gluco 34.0 76 0.0017 26.2 4.6 75 18-104 4-87 (248)
303 PF11253 DUF3052: Protein of u 33.9 1.3E+02 0.0029 24.0 5.6 54 133-187 64-120 (127)
304 PRK09242 tropinone reductase; 33.8 95 0.0021 25.9 5.2 78 18-105 8-96 (257)
305 PRK08589 short chain dehydroge 33.1 3E+02 0.0065 23.3 10.7 76 19-105 6-90 (272)
306 TIGR02689 ars_reduc_gluta arse 32.6 1.9E+02 0.0041 22.1 6.3 75 20-104 1-78 (126)
307 TIGR03169 Nterm_to_SelD pyridi 32.6 2.1E+02 0.0045 25.5 7.5 87 18-107 144-241 (364)
308 cd08274 MDR9 Medium chain dehy 32.6 1.3E+02 0.0029 26.1 6.1 34 15-50 174-209 (350)
309 PRK06198 short chain dehydroge 32.4 2.9E+02 0.0062 22.8 9.3 77 18-104 5-91 (260)
310 KOG3889 Predicted gamma-butyro 32.1 97 0.0021 28.4 5.1 102 43-162 217-338 (371)
311 COG0021 TktA Transketolase [Ca 32.1 87 0.0019 31.6 5.2 68 17-89 147-225 (663)
312 PF02254 TrkA_N: TrkA-N domain 32.0 96 0.0021 22.7 4.4 70 22-106 1-71 (116)
313 PF01728 FtsJ: FtsJ-like methy 31.9 1.4E+02 0.0029 24.0 5.6 131 18-167 23-154 (181)
314 cd02010 TPP_ALS Thiamine pyrop 31.9 56 0.0012 26.7 3.4 35 18-54 66-103 (177)
315 PRK05993 short chain dehydroge 31.9 3.2E+02 0.0069 23.2 9.8 71 19-104 4-83 (277)
316 PRK05565 fabG 3-ketoacyl-(acyl 31.7 66 0.0014 26.3 3.8 80 19-108 5-94 (247)
317 PRK07831 short chain dehydroge 31.6 87 0.0019 26.3 4.6 82 17-106 15-106 (262)
318 PRK06138 short chain dehydroge 31.3 62 0.0013 26.7 3.6 75 19-104 5-88 (252)
319 PRK07890 short chain dehydroge 31.2 66 0.0014 26.7 3.8 78 18-105 4-90 (258)
320 PRK09072 short chain dehydroge 31.2 3.1E+02 0.0067 22.8 9.4 78 19-106 5-89 (263)
321 PRK12769 putative oxidoreducta 31.1 1.1E+02 0.0023 30.4 5.7 67 17-88 466-533 (654)
322 PRK08339 short chain dehydroge 30.9 3.3E+02 0.0071 23.0 10.2 77 18-104 7-92 (263)
323 cd02009 TPP_SHCHC_synthase Thi 30.8 58 0.0013 26.4 3.3 35 19-53 69-104 (175)
324 PRK10126 tyrosine phosphatase; 30.6 1.2E+02 0.0026 24.0 5.0 77 20-104 3-82 (147)
325 PRK09291 short chain dehydroge 30.5 79 0.0017 26.2 4.1 75 20-104 3-80 (257)
326 PRK07523 gluconate 5-dehydroge 30.3 1.2E+02 0.0027 25.1 5.3 78 18-105 9-95 (255)
327 PLN02253 xanthoxin dehydrogena 30.3 75 0.0016 26.9 4.0 78 18-105 17-102 (280)
328 PRK08265 short chain dehydroge 30.3 3.3E+02 0.0071 22.8 8.5 76 18-105 5-88 (261)
329 PRK09853 putative selenate red 30.2 88 0.0019 33.2 5.1 78 17-102 537-628 (1019)
330 cd01981 Pchlide_reductase_B Pc 30.2 55 0.0012 30.5 3.4 28 15-42 297-326 (430)
331 PRK07774 short chain dehydroge 30.1 78 0.0017 26.1 4.0 81 18-108 5-94 (250)
332 cd05285 sorbitol_DH Sorbitol d 30.0 1.4E+02 0.003 26.2 5.7 35 15-51 159-195 (343)
333 PLN00016 RNA-binding protein; 29.9 1.4E+02 0.0031 26.9 6.0 81 18-104 51-137 (378)
334 cd02003 TPP_IolD Thiamine pyro 29.8 53 0.0011 27.4 2.9 35 18-54 66-103 (205)
335 PRK08936 glucose-1-dehydrogena 29.7 1.2E+02 0.0026 25.4 5.1 80 18-105 6-93 (261)
336 PRK07710 acetolactate synthase 29.7 62 0.0013 31.3 3.8 35 18-54 442-479 (571)
337 PRK06997 enoyl-(acyl carrier p 29.6 3.5E+02 0.0075 22.9 9.1 77 18-105 5-92 (260)
338 PRK06935 2-deoxy-D-gluconate 3 29.6 94 0.002 26.0 4.5 77 18-105 14-99 (258)
339 PRK07533 enoyl-(acyl carrier p 29.5 1.1E+02 0.0024 25.8 4.9 77 18-105 9-96 (258)
340 PF01936 NYN: NYN domain; Int 29.5 44 0.00095 25.4 2.2 30 19-48 97-126 (146)
341 PRK13237 tyrosine phenol-lyase 29.5 1E+02 0.0022 29.8 5.1 61 152-213 191-261 (460)
342 PRK00050 16S rRNA m(4)C1402 me 29.4 60 0.0013 29.3 3.4 78 18-105 19-98 (296)
343 PRK08415 enoyl-(acyl carrier p 29.3 1.1E+02 0.0024 26.4 5.0 79 18-105 4-91 (274)
344 COG1568 Predicted methyltransf 29.2 1.9E+02 0.0041 26.7 6.4 137 18-185 152-295 (354)
345 PRK06113 7-alpha-hydroxysteroi 29.1 88 0.0019 26.1 4.2 80 19-108 11-99 (255)
346 PRK07791 short chain dehydroge 29.1 1.4E+02 0.0031 25.7 5.6 86 18-104 5-99 (286)
347 cd02004 TPP_BZL_OCoD_HPCL Thia 29.0 72 0.0016 25.5 3.5 13 20-32 68-80 (172)
348 PRK06949 short chain dehydroge 29.0 98 0.0021 25.6 4.5 80 18-107 8-96 (258)
349 PRK07109 short chain dehydroge 28.8 76 0.0016 28.4 3.9 79 18-105 7-93 (334)
350 TIGR03846 sulfopy_beta sulfopy 28.7 71 0.0015 26.3 3.5 28 25-52 41-68 (181)
351 TIGR03385 CoA_CoA_reduc CoA-di 28.6 2.2E+02 0.0049 26.0 7.1 83 18-104 136-228 (427)
352 PF12242 Eno-Rase_NADH_b: NAD( 28.4 94 0.002 22.8 3.6 42 14-55 34-76 (78)
353 PRK08303 short chain dehydroge 28.3 1.3E+02 0.0027 26.6 5.2 86 18-105 7-103 (305)
354 PRK06077 fabG 3-ketoacyl-(acyl 28.1 3.3E+02 0.0072 22.2 9.8 81 19-107 6-94 (252)
355 PRK07063 short chain dehydroge 28.1 94 0.002 25.9 4.2 78 18-105 6-94 (260)
356 cd02002 TPP_BFDC Thiamine pyro 27.9 83 0.0018 25.2 3.7 35 18-54 67-104 (178)
357 KOG1541 Predicted protein carb 27.9 1.9E+02 0.004 25.9 6.0 68 91-170 106-180 (270)
358 PRK06182 short chain dehydroge 27.7 1E+02 0.0022 26.1 4.3 74 19-107 3-84 (273)
359 PRK08643 acetoin reductase; Va 27.6 99 0.0022 25.7 4.3 77 19-105 2-87 (256)
360 TIGR02177 PorB_KorB 2-oxoacid: 27.4 73 0.0016 28.7 3.6 37 18-54 71-109 (287)
361 COG3579 PepC Aminopeptidase C 27.4 68 0.0015 30.2 3.3 60 67-132 304-364 (444)
362 PRK07102 short chain dehydroge 27.2 3.5E+02 0.0076 22.1 9.3 80 20-109 2-88 (243)
363 PF01269 Fibrillarin: Fibrilla 27.1 4.3E+02 0.0094 23.2 10.5 137 14-177 69-212 (229)
364 cd01965 Nitrogenase_MoFe_beta_ 27.0 1.3E+02 0.0028 28.0 5.3 81 16-105 296-379 (428)
365 TIGR01861 ANFD nitrogenase iro 26.7 62 0.0013 31.5 3.1 36 13-50 322-359 (513)
366 PRK07792 fabG 3-ketoacyl-(acyl 26.1 1.6E+02 0.0034 25.8 5.4 80 18-105 11-97 (306)
367 TIGR00692 tdh L-threonine 3-de 25.8 2.1E+02 0.0047 24.9 6.2 32 17-49 160-192 (340)
368 TIGR01292 TRX_reduct thioredox 25.8 2.2E+02 0.0047 24.0 6.1 81 18-106 140-235 (300)
369 PRK12745 3-ketoacyl-(acyl-carr 25.7 1.5E+02 0.0033 24.4 5.0 77 20-105 3-88 (256)
370 PRK07326 short chain dehydroge 25.6 3.6E+02 0.0079 21.8 8.9 76 19-104 6-89 (237)
371 PRK08690 enoyl-(acyl carrier p 25.6 1.3E+02 0.0028 25.5 4.7 79 18-105 5-92 (261)
372 PRK06196 oxidoreductase; Provi 25.5 90 0.002 27.3 3.8 77 18-106 25-108 (315)
373 TIGR03336 IOR_alpha indolepyru 25.4 83 0.0018 30.9 3.8 37 18-54 421-459 (595)
374 cd02014 TPP_POX Thiamine pyrop 25.4 52 0.0011 26.7 2.1 35 18-54 69-106 (178)
375 cd08239 THR_DH_like L-threonin 25.4 1.4E+02 0.003 26.1 4.9 35 17-52 162-197 (339)
376 PRK12828 short chain dehydroge 25.1 1.3E+02 0.0029 24.3 4.5 78 19-107 7-92 (239)
377 cd08234 threonine_DH_like L-th 25.0 2.2E+02 0.0049 24.5 6.2 36 15-52 156-193 (334)
378 KOG4589 Cell division protein 24.9 4.7E+02 0.01 22.8 8.2 120 15-155 66-189 (232)
379 PF03807 F420_oxidored: NADP o 24.7 73 0.0016 22.6 2.6 42 21-62 1-47 (96)
380 PF06506 PrpR_N: Propionate ca 24.7 3.5E+02 0.0076 21.9 6.9 56 18-82 76-132 (176)
381 PRK07035 short chain dehydroge 24.6 4E+02 0.0086 21.9 9.7 79 19-107 8-95 (252)
382 PRK12778 putative bifunctional 24.4 1.8E+02 0.0039 29.3 6.0 68 16-88 567-635 (752)
383 KOG3131 Uncharacterized conser 24.3 1.9E+02 0.0041 26.0 5.4 77 17-110 79-166 (281)
384 PRK05786 fabG 3-ketoacyl-(acyl 24.3 3.9E+02 0.0084 21.6 9.4 79 19-107 5-91 (238)
385 PRK06718 precorrin-2 dehydroge 24.2 1.5E+02 0.0032 24.9 4.6 33 18-52 9-42 (202)
386 PRK08277 D-mannonate oxidoredu 24.2 1.7E+02 0.0038 24.6 5.2 78 18-105 9-95 (278)
387 PF13344 Hydrolase_6: Haloacid 24.2 89 0.0019 23.2 3.0 29 60-88 15-43 (101)
388 cd05188 MDR Medium chain reduc 24.1 3.9E+02 0.0085 21.7 9.9 34 17-52 133-167 (271)
389 PRK12829 short chain dehydroge 24.1 1.1E+02 0.0024 25.3 3.9 79 18-107 10-96 (264)
390 cd03372 TPP_ComE Thiamine pyro 24.0 95 0.0021 25.4 3.4 13 20-32 61-73 (179)
391 cd02013 TPP_Xsc_like Thiamine 24.0 86 0.0019 25.9 3.2 35 18-54 71-108 (196)
392 cd08301 alcohol_DH_plants Plan 23.9 3E+02 0.0065 24.5 6.9 54 15-81 184-238 (369)
393 PRK04965 NADH:flavorubredoxin 23.7 2.4E+02 0.0052 25.4 6.3 67 18-89 140-211 (377)
394 PRK08159 enoyl-(acyl carrier p 23.7 4.6E+02 0.01 22.3 9.9 77 18-105 9-96 (272)
395 PRK05876 short chain dehydroge 23.4 1.2E+02 0.0027 25.9 4.2 77 19-105 6-91 (275)
396 PRK07418 acetolactate synthase 23.3 95 0.0021 30.5 3.8 36 17-54 451-489 (616)
397 PRK06841 short chain dehydroge 23.2 1.1E+02 0.0024 25.3 3.8 77 18-106 14-98 (255)
398 PF06859 Bin3: Bicoid-interact 23.2 50 0.0011 25.7 1.5 23 127-149 21-43 (110)
399 PRK12743 oxidoreductase; Provi 23.0 4.4E+02 0.0095 21.8 10.5 79 19-105 2-88 (256)
400 TIGR00061 L21 ribosomal protei 23.0 34 0.00073 26.1 0.5 31 20-53 35-65 (101)
401 PF05368 NmrA: NmrA-like famil 22.9 3.5E+02 0.0076 22.2 6.7 73 22-109 1-76 (233)
402 cd03375 TPP_OGFOR Thiamine pyr 22.9 94 0.002 25.8 3.2 35 18-54 69-107 (193)
403 PF01234 NNMT_PNMT_TEMT: NNMT/ 22.8 5.3E+02 0.012 22.8 9.0 143 18-176 56-238 (256)
404 PRK11869 2-oxoacid ferredoxin 22.6 97 0.0021 27.8 3.4 37 18-54 78-116 (280)
405 PRK12814 putative NADPH-depend 22.5 2E+02 0.0043 28.6 5.9 66 17-87 321-387 (652)
406 KOG1975 mRNA cap methyltransfe 22.5 5.1E+02 0.011 24.4 8.0 63 76-151 173-238 (389)
407 PRK10611 chemotaxis methyltran 22.4 1E+02 0.0022 27.7 3.5 36 20-55 117-159 (287)
408 PRK07282 acetolactate synthase 22.4 82 0.0018 30.6 3.1 35 18-54 436-473 (566)
409 PRK06163 hypothetical protein; 22.3 65 0.0014 27.2 2.1 36 18-54 75-113 (202)
410 cd02018 TPP_PFOR Thiamine pyro 22.3 1.2E+02 0.0026 26.2 3.8 36 18-54 87-125 (237)
411 PTZ00393 protein tyrosine phos 22.2 2.3E+02 0.005 25.0 5.6 74 66-153 107-180 (241)
412 PRK12826 3-ketoacyl-(acyl-carr 22.2 1.2E+02 0.0027 24.7 3.8 81 19-109 6-95 (251)
413 PF03269 DUF268: Caenorhabditi 22.0 45 0.00097 28.1 1.0 45 135-179 96-147 (177)
414 cd02005 TPP_PDC_IPDC Thiamine 22.0 95 0.0021 25.4 3.0 13 20-32 70-82 (183)
415 TIGR02720 pyruv_oxi_spxB pyruv 22.0 1.1E+02 0.0023 29.8 3.8 36 18-53 426-462 (575)
416 PRK15001 SAM-dependent 23S rib 21.9 5.9E+02 0.013 23.8 8.6 39 96-151 105-143 (378)
417 PRK08251 short chain dehydroge 21.8 1.4E+02 0.0031 24.5 4.1 77 19-105 2-89 (248)
418 PRK07677 short chain dehydroge 21.8 1.3E+02 0.0028 25.0 3.9 78 19-105 1-86 (252)
419 cd03371 TPP_PpyrDC Thiamine py 21.7 1.2E+02 0.0025 25.1 3.5 36 18-54 66-104 (188)
420 cd03421 SirA_like_N SirA_like_ 21.6 1.8E+02 0.0039 19.5 4.0 32 140-173 22-53 (67)
421 TIGR01283 nifE nitrogenase mol 21.6 1.5E+02 0.0031 28.1 4.5 74 18-103 325-401 (456)
422 PRK12748 3-ketoacyl-(acyl-carr 21.6 2.6E+02 0.0057 23.2 5.7 87 19-105 5-103 (256)
423 COG1432 Uncharacterized conser 21.5 1.2E+02 0.0026 25.1 3.6 25 18-42 110-135 (181)
424 PRK06197 short chain dehydroge 21.4 1.7E+02 0.0037 25.3 4.7 80 16-105 13-103 (306)
425 PRK11749 dihydropyrimidine deh 21.4 1.9E+02 0.0042 26.9 5.3 81 17-103 138-231 (457)
426 PRK08978 acetolactate synthase 21.3 1E+02 0.0022 29.6 3.5 34 18-53 419-455 (548)
427 KOG4549 Magnesium-dependent ph 21.2 93 0.002 25.2 2.6 26 56-81 41-66 (144)
428 PRK06483 dihydromonapterin red 21.2 2.1E+02 0.0046 23.4 5.0 73 19-105 2-82 (236)
429 PRK12367 short chain dehydroge 21.1 5.1E+02 0.011 21.9 9.3 72 19-105 14-87 (245)
430 PRK07062 short chain dehydroge 21.1 2E+02 0.0043 24.0 4.9 78 18-105 7-95 (265)
431 COG0703 AroK Shikimate kinase 21.0 79 0.0017 26.5 2.3 71 19-89 2-110 (172)
432 PRK07814 short chain dehydroge 21.0 1.9E+02 0.0042 24.3 4.8 77 18-104 9-94 (263)
433 PRK08416 7-alpha-hydroxysteroi 20.9 4.9E+02 0.011 21.6 10.6 80 18-105 7-95 (260)
434 TIGR03366 HpnZ_proposed putati 20.9 2.1E+02 0.0046 24.5 5.1 51 18-81 120-171 (280)
435 PRK07370 enoyl-(acyl carrier p 20.9 1.8E+02 0.0039 24.6 4.6 82 18-107 5-97 (258)
436 TIGR02691 arsC_pI258_fam arsen 20.9 3.4E+02 0.0075 20.9 5.9 50 22-77 1-53 (129)
437 TIGR02818 adh_III_F_hyde S-(hy 20.9 3.2E+02 0.0069 24.5 6.5 37 15-52 182-219 (368)
438 PRK13512 coenzyme A disulfide 20.9 2.3E+02 0.0049 26.4 5.6 83 19-105 148-237 (438)
439 PRK07832 short chain dehydroge 20.9 5.1E+02 0.011 21.7 7.9 75 21-105 2-86 (272)
440 PRK07024 short chain dehydroge 20.8 1.5E+02 0.0032 24.8 4.1 76 20-105 3-86 (257)
441 PRK06125 short chain dehydroge 20.8 1.8E+02 0.0038 24.3 4.5 77 19-105 7-89 (259)
442 PRK06101 short chain dehydroge 20.5 4.8E+02 0.011 21.4 8.6 113 20-147 2-124 (240)
443 PRK12775 putative trifunctiona 20.4 2.4E+02 0.0053 29.7 6.2 66 17-87 569-635 (1006)
444 cd06167 LabA_like LabA_like pr 20.3 96 0.0021 23.9 2.6 29 21-51 103-131 (149)
445 PRK05778 2-oxoglutarate ferred 20.2 87 0.0019 28.3 2.6 37 18-54 88-126 (301)
446 PRK14477 bifunctional nitrogen 20.2 1.4E+02 0.003 31.2 4.4 67 15-89 316-383 (917)
447 COG0030 KsgA Dimethyladenosine 20.1 5.4E+02 0.012 22.9 7.5 77 17-108 29-106 (259)
448 COG0569 TrkA K+ transport syst 20.0 2.2E+02 0.0048 24.2 5.0 33 20-54 1-34 (225)
No 1
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=100.00 E-value=3.9e-65 Score=420.90 Aligned_cols=166 Identities=49% Similarity=0.809 Sum_probs=158.3
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|+|||||||||+|||++++++.+|+|||+||++++.+|||++.+||++|++.|+.|+||||||+|+++..+..++||+||
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 79999999999999999988899999999999999999999999999999999999999999999999878899999999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEecCCCCC
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQD 182 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~ 182 (214)
|||||+|. +.++++++ |++||+||.+||+||+++|+++|+|||||++|+||+.|||+++|+++||+|.++++|++++
T Consensus 81 FNFPH~G~--~~~~~~~~-i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 81 FNFPHVGG--GSEDGKRN-IRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred EeCCCCCC--CccchhHH-HHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHH
Confidence 99999995 34555544 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC
Q 041136 183 FPGYHNKRG 191 (214)
Q Consensus 183 yPgY~~~rt 191 (214)
||||.|+||
T Consensus 158 ypgY~~~rT 166 (166)
T PF10354_consen 158 YPGYEHKRT 166 (166)
T ss_pred CCCcccCCC
Confidence 999999987
No 2
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-57 Score=391.76 Aligned_cols=207 Identities=42% Similarity=0.739 Sum_probs=193.6
Q ss_pred ccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
+-....++|+.||++..+||+|||||||||+||+.+++ ++.||+|||+|+.+ ++.+|||++.+|+++|+.+|+.|+|+
T Consensus 42 ~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~ 121 (282)
T KOG4174|consen 42 RMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHG 121 (282)
T ss_pred hhccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEec
Confidence 44567889999999999999999999999999999999 78999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccC-CCCEEEEEecCCCCCCccc
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLG-EGGEVHVTLRDDHPYNQWN 160 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~-~~G~i~VTl~~~~Py~~W~ 160 (214)
||||.|+.++.+..++||+|||||||.|...+ .+++++.|-.||+|+.+||++|+++|+ +.|+|||||++++||+.||
T Consensus 122 Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~-~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ 200 (282)
T KOG4174|consen 122 VDVTSLKFHADLRLQRYDNIIFNFPHSGKGIK-FEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWN 200 (282)
T ss_pred ccceeEEecccccccccceEEEcCCCCCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhh
Confidence 99999999999999999999999999998654 577777777899999999999999999 8999999999999999999
Q ss_pred HhhHHHhcCCEEEEEecCCCCCCCCCccccCCCcccCccccCCc--cEEEEEE
Q 041136 161 VMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVKSNKKFPLKE--CFTFKFC 211 (214)
Q Consensus 161 i~~lA~~~gl~l~~~~~F~~~~yPgY~~~rt~~~~~~~~f~~~~--~~t~~F~ 211 (214)
|..||++.||.|.+...|+++.||||.|||++|..|+.++.... +++|.|.
T Consensus 201 ik~Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~ 253 (282)
T KOG4174|consen 201 IKFLAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFL 253 (282)
T ss_pred hhHhhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEE
Confidence 99999999999999999999999999999999999999987755 5566654
No 3
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.45 E-value=1e-06 Score=72.25 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=-.|.+|++... +...++.|..+... ..++.|++.+.-.++.++. -|.- + .+...+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~---~~~v~~vDi~~~a~---~~a~~n~~~n~~~~v~~~~-~d~~---~--~~~~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP---DAKVTAVDINPDAL---ELAKRNAERNGLENVEVVQ-SDLF---E--ALPDGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST---CEEEEEEESBHHHH---HHHHHHHHHTTCTTEEEEE-SSTT---T--TCCTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCC---CCEEEEEcCCHHHH---HHHHHHHHhcCcccccccc-cccc---c--cccccc
Confidence 678899999776555666777653 44455556555444 2577888877654544433 3332 1 234688
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
||.||+|.|...+. .....++..|++.|..+|+++|++++....
T Consensus 99 fD~Iv~NPP~~~~~-----------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 99 FDLIVSNPPFHAGG-----------DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEEEEE---SBTTS-----------HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEEccchhccc-----------ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 99999999965442 124668999999999999999999765443
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.26 E-value=9.8e-06 Score=71.26 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=101.9
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
|+.+-+ ..+||=+|-|+=--++.||+.... ..|++.-+| +++. .-|.+|++...-..-.-++.-|..++.+.
T Consensus 39 ~~~~~~-~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq--~~~a---~~A~~nv~ln~l~~ri~v~~~Di~~~~~~- 110 (248)
T COG4123 39 FAPVPK-KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQ--EEAA---EMAQRNVALNPLEERIQVIEADIKEFLKA- 110 (248)
T ss_pred hccccc-CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeC--HHHH---HHHHHHHHhCcchhceeEehhhHHHhhhc-
Confidence 344444 899999998887777778887642 456665554 4444 24888888743233445567788888775
Q ss_pred CCCCCcccEEEEcCCCCCCCCC-CCcccHHHHHHhH--HHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPP-LSEQDTNLIKRHK--NLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~-~~~~~~~~i~~n~--~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
....+||.||.|.|+.-.... -.++.+. +..+. -.+.++++.|+.+|+++|.+.+.+ .|-..-.|.++++..
T Consensus 111 -~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~-~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~ei~~~l~~~ 185 (248)
T COG4123 111 -LVFASFDLIICNPPYFKQGSRLNENPLRA-IARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAEIIELLKSY 185 (248)
T ss_pred -ccccccCEEEeCCCCCCCccccCcChhhh-hhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHHHHHHHHhc
Confidence 333479999999999965322 1111111 12222 238999999999999999996663 345677788888888
Q ss_pred CCEEEEE
Q 041136 169 GLVLKEK 175 (214)
Q Consensus 169 gl~l~~~ 175 (214)
++.+.+.
T Consensus 186 ~~~~k~i 192 (248)
T COG4123 186 NLEPKRI 192 (248)
T ss_pred CCCceEE
Confidence 8877663
No 5
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.19 E-value=3.7e-06 Score=63.44 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=73.0
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-+|=|.=+|+.++++.. ..++++.-+|...-- -++.|+..+...+-.-++.-|++++.+ .+...+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~-----~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVE-----LARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHH-----HHHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHH-----HHHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence 478888755555665577664 346666655554321 255566665433346677778888753 25668899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||+|.|...... . .....++...|++.+.++|+++|.+.+.+
T Consensus 73 ~Iv~npP~~~~~~-~-------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSG-D-------KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT------------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCccccc-c-------chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999986421 1 12334588899999999999999997764
No 6
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.16 E-value=4.1e-06 Score=70.03 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++..+||-+|-|+=.|+.+||+.+. ..++ ++.|...++.+ .+.+++....-.++ -+...|+.++... .+...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v--~gvD~~~~~l~---~a~~~~~~~~l~ni-~~i~~d~~~~~~~-~~~~~ 86 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNF--LGIEIHTPIVL---AANNKANKLGLKNL-HVLCGDANELLDK-FFPDG 86 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCE--EEEEeeHHHHH---HHHHHHHHhCCCCE-EEEccCHHHHHHh-hCCCC
Confidence 4667899999777777777888763 3344 56665554442 35566655432234 4455688765321 13345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
.+|.|+.|||..-.+. .. ..++.+...|++.+..+|++||.++++.- ...|..|-+..+....++....
T Consensus 87 ~~d~v~~~~pdpw~k~---~h-----~~~r~~~~~~l~~~~r~LkpgG~l~~~td-~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKK---RH-----NKRRITQPHFLKEYANVLKKGGVIHFKTD-NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred ceeEEEEECCCcCCCC---Cc-----cccccCCHHHHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHHhCCCeEecc
Confidence 7999999998653321 00 12344568899999999999999987743 3446777777777766677654
No 7
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.03 E-value=0.00032 Score=57.46 Aligned_cols=140 Identities=20% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.++||-+|=|.=.++.++++.. . ..++.|-.++..+ .+.+|++... ..+.+ ...|+.+.. ..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---~--~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---K--CILTTDINPFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---C--EEEEEECCHHHHH---HHHHHHHHcC-CceEE-EEccccccc------CC
Confidence 345789999977766777777753 1 4555665454442 4666776432 22333 345554421 24
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
+||.|+.|.|+..........+.... .....++..|+..+.++|+++|.+.+...... +.=.+..+.++.|+.
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFR 159 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCe
Confidence 79999999998744211111000000 12356789999999999999999877632211 234566777888887
Q ss_pred EEE
Q 041136 172 LKE 174 (214)
Q Consensus 172 l~~ 174 (214)
+..
T Consensus 160 ~~~ 162 (179)
T TIGR00537 160 YEI 162 (179)
T ss_pred EEE
Confidence 765
No 8
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.02 E-value=0.0001 Score=64.65 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=100.4
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++++||=+|=|-=.+|..|+...+... ..++.|..+... ..+.+|++.+.-.+ ..+..-
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g--~v~a~D~~~~~l---~~~~~n~~~~g~~~-v~~~~~ 129 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEG--AIVANEFSKSRT---KVLIANINRCGVLN-VAVTNF 129 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCC--EEEEEcCCHHHH---HHHHHHHHHcCCCc-EEEecC
Confidence 444444443444446788999999666666666888775333 356667655544 24677777664323 345666
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++.+.. ....||+|+.|-|+.|.+.-..+. ....+.....+....+.+|..+|++||.+..+-|.-.|-
T Consensus 130 D~~~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 130 DGRVFGA----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred CHHHhhh----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 7776543 124599999999999864211111 112233345567789999999999999998777775553
Q ss_pred -CcccHhhHHHhc-CCEE
Q 041136 157 -NQWNVMGLADKL-GLVL 172 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l 172 (214)
+...|..+.+++ ++.+
T Consensus 206 Ene~vv~~~l~~~~~~~~ 223 (264)
T TIGR00446 206 ENEAVVDYLLEKRPDVVE 223 (264)
T ss_pred HHHHHHHHHHHhCCCcEE
Confidence 566777655543 5543
No 9
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.02 E-value=4.7e-05 Score=70.69 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+||=+|=|+=-.+..|++... . .-.|..|..+...+ .+++|++.....+ +.++.+ |+ -. .+.
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P-~--~~V~~vD~S~~Av~---~A~~N~~~n~~~~~~~v~~~~~-D~---l~--~~~ 295 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP-Q--AKVVFVDESPMAVA---SSRLNVETNMPEALDRCEFMIN-NA---LS--GVE 295 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC-C--CEEEEEECCHHHHH---HHHHHHHHcCcccCceEEEEEc-cc---cc--cCC
Confidence 346899998666555666887763 2 34555664443331 4777886654221 233321 22 11 233
Q ss_pred CCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHh
Q 041136 95 QMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~ 167 (214)
..+||.|+.|+| |.|... ...+...+|+.|.++|++||+++|......||..+ ++..+|+.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~------------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~ 363 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHAL------------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATN 363 (378)
T ss_pred CCCEEEEEECcCcccCccC------------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccC
Confidence 457999999999 445311 22356789999999999999998776554555422 34446667
Q ss_pred cCCEEEEEec
Q 041136 168 LGLVLKEKVE 177 (214)
Q Consensus 168 ~gl~l~~~~~ 177 (214)
.+|.+.++.+
T Consensus 364 ~kf~vl~a~k 373 (378)
T PRK15001 364 NKFVVLKAVK 373 (378)
T ss_pred CCEEEEEEEe
Confidence 7777766543
No 10
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.01 E-value=5.2e-05 Score=69.32 Aligned_cols=115 Identities=24% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|=|.=.++..|++... .+..|+.|......+ .+++|++... ..+.+ +..|+.. . . .++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p---~~~v~~vDis~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~f 262 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP---KIRLTLSDVSAAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRF 262 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCc
Confidence 45899999777777877888753 234556665444432 4666776643 22333 3334432 1 2 4679
Q ss_pred cEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc
Q 041136 99 DVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW 159 (214)
Q Consensus 99 D~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W 159 (214)
|.||.|+|.. |.. .+......|++.|..+|++||+++|....--||..|
T Consensus 263 DlIvsNPPFH~g~~------------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~ 312 (342)
T PRK09489 263 DMIISNPPFHDGIQ------------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL 312 (342)
T ss_pred cEEEECCCccCCcc------------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence 9999999965 431 234578899999999999999998887776777644
No 11
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.99 E-value=0.00013 Score=68.49 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=97.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-.++++||=+|-|-=.++..|++..+... ..++.|..+... ..+++|++.+.-.+ ..+..-|++++.....+.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g--~v~a~D~~~~rl---~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQG--EIWAVDRSASRL---KKLQENAQRLGLKS-IKILAADSRNLLELKPQW 322 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCc--eEEEEcCCHHHH---HHHHHHHHHcCCCe-EEEEeCChhhcccccccc
Confidence 345678999998776667777888765433 445667555443 24667776653223 355667888875322123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~ 167 (214)
...||+|+-|-|+.|.+.-.... ....+.....|....+.+|..+|++||.+..+-|.-.|- +.-+|....++
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 46799999999998753211111 112233345567899999999999999998887776653 45566665554
Q ss_pred c-CCEEE
Q 041136 168 L-GLVLK 173 (214)
Q Consensus 168 ~-gl~l~ 173 (214)
+ ++.+.
T Consensus 403 ~~~~~~~ 409 (434)
T PRK14901 403 HPDWKLE 409 (434)
T ss_pred CCCcEec
Confidence 4 66654
No 12
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.95 E-value=0.00015 Score=65.47 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCCCeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..++++||-+ |.|.+... .+. . +..+ ++.|....+.+ .+..|++...-.+ ..+..-|++++..
T Consensus 180 ~~~g~~vLDp~cGtG~~lie--aa~-~--~~~v--~g~Di~~~~~~---~a~~nl~~~g~~~-i~~~~~D~~~l~~---- 244 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIE--AGL-M--GAKV--IGCDIDWKMVA---GARINLEHYGIED-FFVKRGDATKLPL---- 244 (329)
T ss_pred CCCcCEEEECCCCCCHHHHH--HHH-h--CCeE--EEEcCCHHHHH---HHHHHHHHhCCCC-CeEEecchhcCCc----
Confidence 5677889875 56665544 332 2 2344 45575555442 4677876654334 3456678888743
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.||.|.|--.. .+... .....+...++..+.++|++||.+.+.+.+.. ++..+++.+|+ +.
T Consensus 245 ~~~~~D~Iv~dPPyg~~-~~~~~------~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 245 SSESVDAIATDPPYGRS-TTAAG------DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VV 311 (329)
T ss_pred ccCCCCEEEECCCCcCc-ccccC------CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-ch
Confidence 35689999999996322 11111 11346789999999999999999877754422 34578999999 66
Q ss_pred EEecCCCCCCCCCccc
Q 041136 174 EKVEFLKQDFPGYHNK 189 (214)
Q Consensus 174 ~~~~F~~~~yPgY~~~ 189 (214)
. .|+-|.|+
T Consensus 312 ~-------~~~~~~h~ 320 (329)
T TIGR01177 312 K-------RFEVRVHR 320 (329)
T ss_pred h-------eeeeeeec
Confidence 6 57777764
No 13
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.94 E-value=0.00022 Score=66.91 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=98.6
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-......-.++++||=+|-|.=+++..+++..+... ..|+.|..++.. ..+++|++.+.-.+ ..+..-
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~--~v~avDi~~~~l---~~~~~n~~~~g~~~-v~~~~~ 308 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTG--KVVALDIHEHKL---KLIEENAKRLGLTN-IETKAL 308 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEeCCHHHH---HHHHHHHHHcCCCe-EEEEeC
Confidence 444444333333346678999999777777777988875433 455566544433 24667776553223 344556
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++++... +. ..||+|+.|.|+.|.+.-... .....+..-..+-..++..|..+|++||.+..+-|.-.|-
T Consensus 309 D~~~~~~~--~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 385 (444)
T PRK14902 309 DARKVHEK--FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE 385 (444)
T ss_pred Ccccccch--hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh
Confidence 88776431 22 679999999998875321000 1111222234456789999999999999998776665442
Q ss_pred -CcccHhhHHHhc-CCEEEE
Q 041136 157 -NQWNVMGLADKL-GLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l~~ 174 (214)
+...+....+++ ++.+..
T Consensus 386 Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 386 ENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred hhHHHHHHHHHhCCCcEEec
Confidence 455566555544 466544
No 14
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.93 E-value=0.00017 Score=67.45 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=98.7
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
||.+.+-.-....-.++++||-+|-|-=+.+..+++..+. ...+++|..+...+ .+++|++.+.- ++ .+...
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~---~~~~n~~~~g~-~~-~~~~~ 300 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLE---RVRENLQRLGL-KA-TVIVG 300 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHH---HHHHHHHHcCC-Ce-EEEEc
Confidence 4444333333333457889999986555556668877632 34566675554432 46667765432 23 34566
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP- 155 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P- 155 (214)
|++++... +...+||.|+.|-|..|.+.-... .+...+.....+...++..|..+|++||.+.++-|.-.|
T Consensus 301 D~~~~~~~--~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 301 DARDPAQW--WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred Ccccchhh--cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 88876432 335679999999999874311000 111223334567789999999999999999888775444
Q ss_pred CCcccHhhHHHh-cCCEEEE
Q 041136 156 YNQWNVMGLADK-LGLVLKE 174 (214)
Q Consensus 156 y~~W~i~~lA~~-~gl~l~~ 174 (214)
-+..+|....++ .++.+..
T Consensus 379 Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 379 ENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred hCHHHHHHHHHhCCCCEEec
Confidence 355566665544 4676544
No 15
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00019 Score=64.75 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=96.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.|.....+||=||=|.==-+..|++..+ ..-.|-.|-. ..+. .|+.|+....-.+..|+.+-....+
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v----- 221 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV----- 221 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc-----
Confidence 3555566899999777666667888764 4556666633 3343 5788888876555556665444433
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-----c-ccHhhHHH
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-----Q-WNVMGLAD 166 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-----~-W~i~~lA~ 166 (214)
.. +||.||.|.|..-++ .....+-..+|+.|...|++||+++|-.....||. . =+++.+|+
T Consensus 222 -~~-kfd~IisNPPfh~G~-----------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~ 288 (300)
T COG2813 222 -EG-KFDLIISNPPFHAGK-----------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAK 288 (300)
T ss_pred -cc-cccEEEeCCCccCCc-----------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEe
Confidence 23 899999999988553 23466888999999999999999988877555653 1 24677788
Q ss_pred hcCCEEEEEe
Q 041136 167 KLGLVLKEKV 176 (214)
Q Consensus 167 ~~gl~l~~~~ 176 (214)
..||.+.++.
T Consensus 289 ~~gf~Vl~a~ 298 (300)
T COG2813 289 NGGFKVLRAK 298 (300)
T ss_pred CCCEEEEEEe
Confidence 8888776643
No 16
>PRK14968 putative methyltransferase; Provisional
Probab=97.84 E-value=0.0012 Score=53.50 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+..+||.+|=|+=.++..|++. +.+++++-++ ++.. ..+++|+......+ +.++ ..|+.+ .+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s--~~~~---~~a~~~~~~~~~~~~~~~~~-~~d~~~-----~~~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDIN--PYAV---ECAKCNAKLNNIRNNGVEVI-RSDLFE-----PFR 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECC--HHHH---HHHHHHHHHcCCCCcceEEE-eccccc-----ccc
Confidence 56789999996665666667776 3466665444 3333 13556665433222 4433 334432 133
Q ss_pred CCcccEEEEcCCCCCCCCCCCccc--HHHH----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQD--TNLI----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~--~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
...||.|++|.|...... ...-. .+.. ......+..|++.+..+|+++|.+.+.+.... ..=.+..+..+.
T Consensus 88 ~~~~d~vi~n~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~ 164 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEE-EEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKL 164 (188)
T ss_pred ccCceEEEECCCcCCCCc-hhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHC
Confidence 447999999999864321 10000 0000 01256788999999999999999877754321 112355677788
Q ss_pred CCEEEE
Q 041136 169 GLVLKE 174 (214)
Q Consensus 169 gl~l~~ 174 (214)
|+....
T Consensus 165 g~~~~~ 170 (188)
T PRK14968 165 GFEAEV 170 (188)
T ss_pred CCeeee
Confidence 987654
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.80 E-value=0.00058 Score=60.70 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++... +..+|+.|..++..+ .+..|++.+.-.+..-++.-|+.+ .+...+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~---~~~v~avDis~~al~---~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP---EAEVDAVDISPDALA---VAEINIERHGLEDRVTLIQSDLFA-----ALPGRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHcCCCCcEEEEECchhh-----ccCCCC
Confidence 357899999888888888998763 344566675444432 477777655321212233445532 123457
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD 166 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~ 166 (214)
||.||.|.|-+.... ......+ ++ ...+++..++..|.++|++||.+.+.+-. +.=.+..+..
T Consensus 190 fD~Iv~NPPy~~~~~-~~~l~~~-~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~ 263 (284)
T TIGR03533 190 YDLIVSNPPYVDAED-MADLPAE-YHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYP 263 (284)
T ss_pred ccEEEECCCCCCccc-hhhCCHh-hhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHH
Confidence 999999999875432 1111001 11 12356789999999999999999877542 2124666666
Q ss_pred hcCCE
Q 041136 167 KLGLV 171 (214)
Q Consensus 167 ~~gl~ 171 (214)
.+|+.
T Consensus 264 ~~~~~ 268 (284)
T TIGR03533 264 DVPFT 268 (284)
T ss_pred hCCCc
Confidence 66643
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=97.74 E-value=0.0013 Score=55.95 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|-|.=.++..+++. + ..++ |+.|..++..+ .+.+|++... ..+. ++.-|+.+. +..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v--~~vD~s~~~l~---~a~~n~~~~~-~~~~-~~~~d~~~~-----~~~ 99 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSV--TAVDISRRAVR---SARLNALLAG-VDVD-VRRGDWARA-----VEF 99 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeE--EEEECCHHHHH---HHHHHHHHhC-CeeE-EEECchhhh-----ccC
Confidence 456789999997765566667664 2 2345 45554333331 3566665442 1233 333455432 334
Q ss_pred CcccEEEEcCCCCCCCC-CCCcccHHHH----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 96 MKFDVIIFNFPHAGHSP-PLSEQDTNLI----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~-~~~~~~~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
..||.||.|.|+..... +..+...... .....++..|++.|..+|+++|.+.+...+-. +.-++..+.++.|+
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 177 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL 177 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence 68999999998764311 0011110000 11345789999999999999999987654422 22356677778887
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
.+..
T Consensus 178 ~~~~ 181 (223)
T PRK14967 178 DAEV 181 (223)
T ss_pred CeEE
Confidence 5544
No 19
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=4.6e-06 Score=73.45 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=99.6
Q ss_pred hhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCC
Q 041136 30 FSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 30 FSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G 109 (214)
|+|++++-..+....+++||++.+..++. .-|.+.+|++-++..|..+.+.++.++.++--.+..+-|+-+.+=+||.|
T Consensus 1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g 79 (282)
T KOG4174|consen 1 FGFAARLKETLDLSTQLTATCLQRPAELA-RDPLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG 79 (282)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhc-cChhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence 67888887766556799999999988775 34778999999999999999999999988765556788999999999999
Q ss_pred CCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEec
Q 041136 110 HSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 110 ~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.+.+ | -.+..|...+| -|...+|-..|||+.|++-.|.++.+.-+
T Consensus 80 ~sa~------n--i~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv 124 (282)
T KOG4174|consen 80 RSAG------N--ITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDV 124 (282)
T ss_pred cccc------c--eeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccc
Confidence 6543 1 23566766666 45566788899999999999999877433
No 20
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00045 Score=63.43 Aligned_cols=137 Identities=19% Similarity=0.297 Sum_probs=95.7
Q ss_pred CCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+..|| .+|.|.|=.-++| . +.+++.+ |-...+.+ .+..|++...-.+..++-..||++|. |..
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl---~--G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~ 262 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGL---M--GARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRD 262 (347)
T ss_pred cCCEeecCcCCccHHHHhhhh---c--CceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCC
Confidence 344454 5888988333222 2 3466666 76666653 58899999875566666666999986 666
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||-|+-+.|= |..+..... .--+|+.+||++++.+|+++|.+... .|.+. ...+.+.|+.+..
T Consensus 263 ~~vdaIatDPPY-Grst~~~~~------~l~~Ly~~~le~~~evLk~gG~~vf~----~p~~~---~~~~~~~~f~v~~- 327 (347)
T COG1041 263 NSVDAIATDPPY-GRSTKIKGE------GLDELYEEALESASEVLKPGGRIVFA----APRDP---RHELEELGFKVLG- 327 (347)
T ss_pred CccceEEecCCC-Ccccccccc------cHHHHHHHHHHHHHHHhhcCcEEEEe----cCCcc---hhhHhhcCceEEE-
Confidence 689999999985 443221111 12579999999999999999999777 45333 3567788999988
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.|+-|.|+
T Consensus 328 ------~~~~~~H~ 335 (347)
T COG1041 328 ------RFTMRVHG 335 (347)
T ss_pred ------EEEEeecC
Confidence 57777764
No 21
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.64 E-value=0.001 Score=62.57 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=95.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||-+|-|-=.+|..|++..+... ..++.|..++..+ .+.+|++.+.-. ...+..-|+.++. ..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~--~V~avD~s~~~l~---~~~~~~~~~g~~-~v~~~~~Da~~~~-----~~ 316 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRG--QITAVDRYPQKLE---KIRSHASALGIT-IIETIEGDARSFS-----PE 316 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCc--EEEEEECCHHHHH---HHHHHHHHhCCC-eEEEEeCcccccc-----cC
Confidence 45678999999765556666888765333 5567786555442 466677655321 2345566777653 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCcccHhhHHHhc
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQWNVMGLADKL 168 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~W~i~~lA~~~ 168 (214)
..||+|+.+-|+.|.+.-.... +.+.+.....+-..++.+|..+|++||.+.+.-|.-.| -+..+|....+++
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 5799999999999864211110 11223333456678999999999999999888887655 3577787766554
Q ss_pred -CCEEEE
Q 041136 169 -GLVLKE 174 (214)
Q Consensus 169 -gl~l~~ 174 (214)
++.+..
T Consensus 397 ~~~~~~~ 403 (445)
T PRK14904 397 PEFSAEP 403 (445)
T ss_pred CCCEEec
Confidence 566543
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.63 E-value=0.0019 Score=54.21 Aligned_cols=128 Identities=19% Similarity=0.127 Sum_probs=87.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-+|-|.=.+|..+++... ....|+.|..++..+ .+.+|++.+.-.++. +..-|+.++. . ..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~---~~~V~giD~s~~~l~---~A~~~~~~~~l~~i~-~~~~d~~~~~----~-~~ 111 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP---ELKVTLVDSLGKKIA---FLREVAAELGLKNVT-VVHGRAEEFG----Q-EE 111 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC---CCeEEEEeCcHHHHH---HHHHHHHHcCCCCEE-EEeccHhhCC----C-CC
Confidence 3478999999555555555776553 345677787666552 467777776543443 4455777653 2 56
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|. .+ -+..|++.+.++|++||.+.+-... -..+.+..++.-+|+.+....
T Consensus 112 ~fDlV~~~~--~~------------------~~~~~l~~~~~~LkpGG~lv~~~~~---~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 112 KFDVVTSRA--VA------------------SLSDLVELCLPLLKPGGRFLALKGR---DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred CccEEEEcc--cc------------------CHHHHHHHHHHhcCCCeEEEEEeCC---ChHHHHHHHHHhcCceEeeeE
Confidence 899999862 11 1457889999999999999777433 356678888899999988866
Q ss_pred cCC
Q 041136 177 EFL 179 (214)
Q Consensus 177 ~F~ 179 (214)
...
T Consensus 169 ~~~ 171 (187)
T PRK00107 169 ELT 171 (187)
T ss_pred EEe
Confidence 554
No 23
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.62 E-value=0.0016 Score=61.30 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=98.6
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-...+..-.++.+||=+|=|-=..|..++...+....|+ +.|..+.-. ..+.+|++.+.-.. ..+...
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~--a~Dis~~rl---~~~~~n~~r~g~~~-v~~~~~ 295 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKIL--AVDISREKI---QLVEKHAKRLKLSS-IEIKIA 295 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEE--EEECCHHHH---HHHHHHHHHcCCCe-EEEEEC
Confidence 444444333334456778999888444444444777765444454 456444332 24667776553222 345567
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP- 155 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P- 155 (214)
|++++.. +...+||+|+-|-|+.|.+.-.... ..+.+.....+-...+.+|..+|++||.+..+-|.-.|
T Consensus 296 Da~~l~~---~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 296 DAERLTE---YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred chhhhhh---hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 8887643 2345799999999998874311111 11122333445678899999999999999888887655
Q ss_pred CCcccHhhHHH-hcCCEEEE
Q 041136 156 YNQWNVMGLAD-KLGLVLKE 174 (214)
Q Consensus 156 y~~W~i~~lA~-~~gl~l~~ 174 (214)
-+..+|....+ +.++.+..
T Consensus 373 Ene~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 373 ENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred hCHHHHHHHHHhCCCcEEec
Confidence 46677776544 55776544
No 24
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.62 E-value=0.0016 Score=56.42 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=86.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.+..+||-+|-|.=.++.+|++... ... .++.|..+...+ .+.+|++.....++.+ ...|+... +..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~-~~~--v~~iDis~~~l~---~a~~n~~~~~~~~i~~-~~~d~~~~-----~~~ 173 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP-DAE--VTAVDISPEALA---VARRNAKHGLGARVEF-LQGDWFEP-----LPG 173 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC-CCE--EEEEECCHHHHH---HHHHHHHhCCCCcEEE-EEccccCc-----CCC
Confidence 34667899999887778888988873 234 455564444331 4677776111123333 34455321 224
Q ss_pred CcccEEEEcCCCCCCCCCC-CcccHHH------H---HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 96 MKFDVIIFNFPHAGHSPPL-SEQDTNL------I---KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~-~~~~~~~------i---~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
.+||.||.|+|........ ...+... + ....+++..+++.|..+|++||.+.+.+-. ...-.+..+.
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l 250 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALL 250 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHH
Confidence 6899999999988642100 0011000 0 012356788999999999999999886422 2233477777
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
...|+.-..
T Consensus 251 ~~~gf~~v~ 259 (275)
T PRK09328 251 AAAGFADVE 259 (275)
T ss_pred HhCCCceeE
Confidence 788886444
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.61 E-value=0.00019 Score=60.48 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~~~~~~~ 96 (214)
+..+||-+|=|.=.++..|++... ..++ ++.|..++..+ .+.++++...-.++. ++.-|+ ..+... +...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v--~gVD~s~~~i~---~a~~~~~~~~~~~v~-~~~~d~~~~l~~~--~~~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINF--IGIEVHEPGVG---KALKKIEEEGLTNLR-LLCGDAVEVLLDM--FPDG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccE--EEEEechHHHH---HHHHHHHHcCCCCEE-EEecCHHHHHHHH--cCcc
Confidence 577899998555555555777653 3344 55554443331 356666554322344 445577 555421 4456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
.||.|+.|||....... . ...+.+...|++.+..+|+++|.+.++... . -....+.+...+.|+...
T Consensus 111 ~~D~V~~~~~~p~~~~~---~-----~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~-~-~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKR---H-----HKRRLVQPEFLALYARKLKPGGEIHFATDW-E-GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ccceEEEECCCCCCCcc---c-----cccccCCHHHHHHHHHHcCCCCEEEEEcCC-H-HHHHHHHHHHHhCccccc
Confidence 79999999985432110 0 112335678999999999999999887322 1 123446677777887665
No 26
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.59 E-value=0.0016 Score=60.96 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE--E-E
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL--V-L 79 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--V-l 79 (214)
||.+.+-.-....-..+.+||=+|-|-=.++..+++..+ ...| ++.|..++..+ .+.+|++.+ |+. + .
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v--~a~D~~~~~l~---~~~~n~~r~---g~~~~v~~ 293 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQV--VALDIHEHRLK---RVYENLKRL---GLTIKAET 293 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeE--EEEeCCHHHHH---HHHHHHHHc---CCCeEEEE
Confidence 333333333333445678999999766666667888775 3344 55565444331 456677654 443 2 2
Q ss_pred EccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 80 ~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...|+..+.. ......||+|+-+-|+.|.+.-... .+...+..-..|-..++.+|..+|++||.+.++-|.-
T Consensus 294 ~~~d~~~~~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 294 KDGDGRGPSQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred eccccccccc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3345543322 1235679999999999986421111 0112233344567888999999999999999888876
Q ss_pred CC-CCcccHhhHHHhc-CCEE
Q 041136 154 HP-YNQWNVMGLADKL-GLVL 172 (214)
Q Consensus 154 ~P-y~~W~i~~lA~~~-gl~l 172 (214)
.| -+..+|..+.+++ ++.+
T Consensus 372 ~~~Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 372 LPEENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred ChhhCHHHHHHHHHhCCCCee
Confidence 55 4677777755544 5543
No 27
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.57 E-value=0.0012 Score=57.62 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++... +..+ ++.|...+..+ .+++|++.+ |+.+ +.-|+.+.-. .....+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v--~~vDis~~al~---~A~~N~~~~---~~~~-~~~D~~~~l~--~~~~~~ 153 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD-GIEL--HAADIDPAAVR---CARRNLADA---GGTV-HEGDLYDALP--TALRGR 153 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHc---CCEE-EEeechhhcc--hhcCCC
Confidence 345899998777667777887764 2345 45665444332 467777543 4444 3446554211 111346
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
||.||.|.|-...... .....+ .+. -.+++..++.+|..+|+++|.+.+.+... +.-.+..+.
T Consensus 154 fDlVv~NPPy~~~~~~-~~~~~e-~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---~~~~v~~~l 228 (251)
T TIGR03704 154 VDILAANAPYVPTDAI-ALMPPE-ARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---QAPLAVEAF 228 (251)
T ss_pred EeEEEECCCCCCchhh-hcCCHH-HHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---hHHHHHHHH
Confidence 9999999999864211 000001 111 13457899999999999999997775443 344677888
Q ss_pred HhcCCEEE
Q 041136 166 DKLGLVLK 173 (214)
Q Consensus 166 ~~~gl~l~ 173 (214)
++.|+...
T Consensus 229 ~~~g~~~~ 236 (251)
T TIGR03704 229 ARAGLIAR 236 (251)
T ss_pred HHCCCCce
Confidence 88887653
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.53 E-value=0.0013 Score=54.67 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=82.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
+-.+++||-||=|.=.+|..|+.... +...|++|..++..+ -+.+|++.+.-.++. +..-|+.++. ..
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~---~~~V~~iD~s~~~~~---~a~~~~~~~~~~~i~-~i~~d~~~~~-----~~ 107 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP---ELKLTLLESNHKKVA---FLREVKAELGLNNVE-IVNGRAEDFQ-----HE 107 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC---CCeEEEEeCcHHHHH---HHHHHHHHhCCCCeE-EEecchhhcc-----cc
Confidence 33588999999544444444665442 234677787665542 355666665433444 4455777752 24
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.|+.|. .+. +..+++.+..+|++||.+.+.+.....-..+.+++.+...|+...++
T Consensus 108 ~~fD~I~s~~--~~~------------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 108 EQFDVITSRA--LAS------------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred CCccEEEehh--hhC------------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeec
Confidence 6799999874 110 23456677899999999987753322223444555566689999987
Q ss_pred ecCCCC
Q 041136 176 VEFLKQ 181 (214)
Q Consensus 176 ~~F~~~ 181 (214)
-+|.-.
T Consensus 168 ~~~~~~ 173 (181)
T TIGR00138 168 PPLTGP 173 (181)
T ss_pred cccCCC
Confidence 776644
No 29
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.53 E-value=0.002 Score=54.66 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++.++++.+. ....++.|..+...+ .+..|++.+...++. +..-|+.+ .+...+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~---~~~v~~iD~~~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~-----~~~~~~ 154 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP---DARVTAVDISPEALA---VARKNAARLGLDNVT-FLQSDWFE-----PLPGGK 154 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHcCCCeEE-EEECchhc-----cCcCCc
Confidence 345899999777677777888764 235667775554442 466676654322233 33445543 133578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
||.||.|+|-....... ..... ++. ....+..|++.+..+|+++|.+.+..-. .+.-.+.++.
T Consensus 155 fD~Vi~npPy~~~~~~~-~~~~~-~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l 229 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIH-LLDPE-VRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALF 229 (251)
T ss_pred eeEEEECCCCCchhhhh-hcChh-hhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHH
Confidence 99999999987642110 00000 110 1234678999999999999999876421 2345577788
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
.++|+.-..
T Consensus 230 ~~~gf~~v~ 238 (251)
T TIGR03534 230 EAAGFADVE 238 (251)
T ss_pred HhCCCCceE
Confidence 888986554
No 30
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.53 E-value=0.0021 Score=57.92 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-+|-|.=.++.+|++.+. +..+|+.|..++.. ..+.+|++.+.-.+-..+..-|+.+ .+...+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al---~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDAL---AVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHH---HHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCcc
Confidence 6899999888788888988763 34455667544433 2577887766422212233345532 12235799
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
.||.|.|.++... ...-..+ ++ ..-++...++..|..+|++||.+.+.+-.. .. .+..+....
T Consensus 204 lIvsNPPyi~~~~-~~~l~~~-~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---~~-~~~~~~~~~ 277 (307)
T PRK11805 204 LIVSNPPYVDAED-MADLPAE-YRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---RV-HLEEAYPDV 277 (307)
T ss_pred EEEECCCCCCccc-hhhcCHh-hccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---HH-HHHHHHhhC
Confidence 9999999987532 1100000 00 013577899999999999999998764432 12 255665566
Q ss_pred CCEEE
Q 041136 169 GLVLK 173 (214)
Q Consensus 169 gl~l~ 173 (214)
++...
T Consensus 278 ~~~~~ 282 (307)
T PRK11805 278 PFTWL 282 (307)
T ss_pred CCEEE
Confidence 65543
No 31
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.51 E-value=0.00053 Score=63.98 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=85.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+...+|-||=|.=-|+..+|+.+. ..+++|. |-...... .+..++....-.++. +...||..+-. .+....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGI--EI~~~~i~---~a~~ka~~~gL~NV~-~i~~DA~~ll~--~~~~~s 192 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGI--EIHTPSIE---QVLKQIELLNLKNLL-IINYDARLLLE--LLPSNS 192 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEE--ECCHHHHH---HHHHHHHHcCCCcEE-EEECCHHHhhh--hCCCCc
Confidence 356899999666566666888873 4455554 53333321 244445443323444 45678987653 266788
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
+|+|+.|||-.-.+ .+. .|.....|+..+..+|++||.+++.--. .+|-.|-+..+.+...+..
T Consensus 193 ~D~I~lnFPdPW~K----krH------RRlv~~~fL~e~~RvLkpGG~l~l~TD~-~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 193 VEKIFVHFPVPWDK----KPH------RRVISEDFLNEALRVLKPGGTLELRTDS-ELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eeEEEEeCCCCccc----cch------hhccHHHHHHHHHHHcCCCcEEEEEEEC-HHHHHHHHHHHHhCCCcee
Confidence 99999999854332 111 1334689999999999999999887433 4466666666655545544
No 32
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.46 E-value=0.006 Score=51.50 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-+|=|.=+++..|++..++... .|++|..++..+ .+++++......++.+ ..-|+.++. +.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~~----~~ 111 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGH--VIGLDFSENMLS---VGRQKVKDAGLHNVEL-VHGNAMELP----FD 111 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCE--EEEEECCHHHHH---HHHHHHHhcCCCceEE-EEechhcCC----CC
Confidence 4567889999997777777789988765444 455665444432 3566665443323444 334666543 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+++..-.. + ...+++.+..+|++||.+.+.
T Consensus 112 ~~~fD~V~~~~~l~~~~----~------------~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVP----D------------YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCCccEEEEecccccCC----C------------HHHHHHHHHHHcCcCeEEEEE
Confidence 56899999987642211 0 124667788999999998654
No 33
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.45 E-value=0.0019 Score=64.23 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=93.4
Q ss_pred ccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCC
Q 041136 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~ 89 (214)
.++..+..+++||-+|=|.=.||..+++. | +. -+|+.|..+...+ -+++|++.+.-. .-.-+...|+.+.-+
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~--~V~~vD~s~~al~---~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AK--STTTVDMSNTYLE---WAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CC--EEEEEeCCHHHHH---HHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 45667778899999885444455456653 2 22 3667786555442 477888765422 123445567654221
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
. + ..+||.||.|.|-.+......+ . ..-..-....+..|..+|++||.+.++.+... ... ..+.+.++|
T Consensus 604 ~--~-~~~fDlIilDPP~f~~~~~~~~-~----~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~~~~~g 672 (702)
T PRK11783 604 E--A-REQFDLIFIDPPTFSNSKRMED-S----FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEGLAKLG 672 (702)
T ss_pred H--c-CCCcCEEEECCCCCCCCCccch-h----hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHHHHhCC
Confidence 1 1 4679999999998864211111 0 11122345567779999999999887765433 232 266777888
Q ss_pred CEEEEEe-cCCCCCCC
Q 041136 170 LVLKEKV-EFLKQDFP 184 (214)
Q Consensus 170 l~l~~~~-~F~~~~yP 184 (214)
+.+.... .-.+.++|
T Consensus 673 ~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 673 LKAEEITAKTLPPDFA 688 (702)
T ss_pred CeEEEEecCCCCCCCC
Confidence 8887643 33445555
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.44 E-value=0.0014 Score=58.20 Aligned_cols=133 Identities=21% Similarity=0.306 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-+++++||-+|=|-=+++.-+|+.+| +++++.++ |.++.. .+.+.++.+...+...+.-.|..++..
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitl-S~~Q~~----~a~~~~~~~gl~~~v~v~~~D~~~~~~----- 126 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITL-SEEQAE----YARERIREAGLEDRVEVRLQDYRDLPG----- 126 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEEC-CHHHHH----HHHHHHHhcCCCCceEEEEeeccccCC-----
Confidence 467899999999887788888999995 46666655 333332 244445444322333444467766542
Q ss_pred CCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE---EecCCC---------------
Q 041136 95 QMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV---TLRDDH--------------- 154 (214)
Q Consensus 95 ~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V---Tl~~~~--------------- 154 (214)
+||+||.- |-|+|.+ =+..||+.+..+|+|||.+.| |..+..
T Consensus 127 --~fD~IvSi~~~Ehvg~~----------------~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky 188 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRK----------------NYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY 188 (273)
T ss_dssp --S-SEEEEESEGGGTCGG----------------GHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH
T ss_pred --CCCEEEEEechhhcChh----------------HHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe
Confidence 89999986 8898842 256789999999999999743 332210
Q ss_pred --C----CCcccHhhHHHhcCCEEEEEec
Q 041136 155 --P----YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --P----y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
| -....+...+...||.+.....
T Consensus 189 iFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 189 IFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp TSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred eCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 1 1233455667778888876543
No 35
>PRK01581 speE spermidine synthase; Validated
Probab=97.43 E-value=0.0022 Score=59.61 Aligned_cols=146 Identities=15% Similarity=0.237 Sum_probs=89.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHH-HHHHHHhCCCEEEEcccccc-CCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQA-HLQSLWSRGCLVLHGVNVHT-MDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~-ni~~L~~~g~~Vl~~VDAt~-L~~~~~ 92 (214)
-.+.++||++|=|+=+.++.+.++ .+..+|++.-+|.+ -++.++||...+ |-..+..-.+.++++ ||.+ |..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~--- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS--- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh---
Confidence 355679999998887777767764 33457777777754 233334432111 111222334555444 5554 322
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC----cccHhhHHHhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN----QWNVMGLADKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~----~W~i~~lA~~~ 168 (214)
...+||.||-+.|..-.. ......-..||+.++..|+++|.+.+. .+.|.. .|.+....++.
T Consensus 223 -~~~~YDVIIvDl~DP~~~-----------~~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~a 288 (374)
T PRK01581 223 -PSSLYDVIIIDFPDPATE-----------LLSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHA 288 (374)
T ss_pred -cCCCccEEEEcCCCcccc-----------chhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHh
Confidence 245799999999874321 012333478999999999999987555 334543 38888888888
Q ss_pred CCEEEEEecCCC
Q 041136 169 GLVLKEKVEFLK 180 (214)
Q Consensus 169 gl~l~~~~~F~~ 180 (214)
++....-.-+-|
T Consensus 289 f~~v~~y~t~vP 300 (374)
T PRK01581 289 GLTVKSYHTIVP 300 (374)
T ss_pred CCceEEEEEecC
Confidence 887776444433
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.42 E-value=0.0014 Score=48.73 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~~~~~~~ 96 (214)
++.+||-||=|.=+++..|++.+. +.+ .+++|..+++.+ .+.+++.......-.-++.-|+ ...+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~ 69 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GAR--VVGVDISPEMLE---IARERAAEEGLSDRITFVQGDAEFDPD-----FLE 69 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSE--EEEEESSHHHHH---HHHHHHHHTTTTTTEEEEESCCHGGTT-----TSS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCE--EEEEeCCHHHHH---HHHHHHHhcCCCCCeEEEECccccCcc-----cCC
Confidence 468999999777777777988654 334 555665455442 4667775544334445566677 2221 235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.+. ...... + +.+-...+++.+.++|+|||.+.|+-
T Consensus 70 ~~D~v~~~~-~~~~~~---------~--~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 70 PFDLVICSG-FTLHFL---------L--PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CEEEEEECS-GSGGGC---------C--HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECC-Cccccc---------c--chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 599999998 432100 1 11445667888999999999999874
No 37
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.41 E-value=0.0036 Score=59.06 Aligned_cols=143 Identities=16% Similarity=0.104 Sum_probs=86.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++.+|++... ..++ |+.|..++..+ .+++|++.+. ..+.+ ..-|..+.. .....
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~V--tAVDiS~~ALe---~AreNa~~~g-~rV~f-i~gDl~e~~---l~~~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-DAFV--RASDISPPALE---TARKNAADLG-ARVEF-AHGSWFDTD---MPSEG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHcC-CcEEE-EEcchhccc---cccCC
Confidence 3556999999776666777887653 2344 55665444432 4777877653 12333 334543321 01234
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
+||.||.|.|.+..... +.....++ .-.+.++.++..+..+|+++|.+.+-+-. .+.-.+.+++
T Consensus 319 ~FDLIVSNPPYI~~~e~--~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~~ll 393 (423)
T PRK14966 319 KWDIIVSNPPYIENGDK--HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVRGVL 393 (423)
T ss_pred CccEEEECCCCCCcchh--hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHHHHH
Confidence 79999999999865321 11000011 11345779999999999999998665422 2345688888
Q ss_pred HhcCCEEEEE
Q 041136 166 DKLGLVLKEK 175 (214)
Q Consensus 166 ~~~gl~l~~~ 175 (214)
...|+...+.
T Consensus 394 ~~~Gf~~v~v 403 (423)
T PRK14966 394 AENGFSGVET 403 (423)
T ss_pred HHCCCcEEEE
Confidence 8889876553
No 38
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.34 E-value=0.0032 Score=60.49 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|-|.=.++.+|++.+. ... +|+.|..++..+ .+.+|++.+.-.+..-+...|+.. .+...+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~--v~avDis~~al~---~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~f 207 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NAN--VIATDISLDAIE---VAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKF 207 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCe--EEEEECCHHHHH---HHHHHHHHcCCccceeeeecchhh-----hCcCCCc
Confidence 46899999777667777888764 234 455564343331 477777654321222234445432 1234579
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
|.||.|.|.+..... .+...+... .-.+.+..++..|..+|+++|.+.+.+-. .+...+..+...
T Consensus 208 DlIvsNPPYi~~~~~-~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---~q~~~v~~~~~~ 283 (506)
T PRK01544 208 DFIVSNPPYISHSEK-SEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---KQEEAVTQIFLD 283 (506)
T ss_pred cEEEECCCCCCchhh-hhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---chHHHHHHHHHh
Confidence 999999999875321 000000000 01346788899999999999999776433 234567777778
Q ss_pred cCCEEEE
Q 041136 168 LGLVLKE 174 (214)
Q Consensus 168 ~gl~l~~ 174 (214)
.|+....
T Consensus 284 ~g~~~~~ 290 (506)
T PRK01544 284 HGYNIES 290 (506)
T ss_pred cCCCceE
Confidence 8876544
No 39
>PRK03612 spermidine synthase; Provisional
Probab=97.32 E-value=0.0011 Score=63.78 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=84.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHH-HHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQ-AHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~-~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+.++||.+|=|+=..++.++++ +....+++.-+|.+- ++.++++... -|-..+..-.++++.+ |+.+.-+. .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---C
Confidence 56789999999988888888864 322466666555432 2222211100 0111222234566554 77763221 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHhcCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADKLGL 170 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~~gl 170 (214)
.++||.||-|+|+..... ..+..-..||+.+++.|+++|.+.+.. +.|+ ..|.+.+..++.|+
T Consensus 371 ~~~fDvIi~D~~~~~~~~-----------~~~L~t~ef~~~~~~~L~pgG~lv~~~--~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA-----------LGKLYSVEFYRLLKRRLAPDGLLVVQS--TSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCCEEEEeCCCCCCcc-----------hhccchHHHHHHHHHhcCCCeEEEEec--CCcccchHHHHHHHHHHHHcCC
Confidence 358999999999864311 122234679999999999999987764 2343 35788888888888
Q ss_pred E
Q 041136 171 V 171 (214)
Q Consensus 171 ~ 171 (214)
.
T Consensus 438 ~ 438 (521)
T PRK03612 438 A 438 (521)
T ss_pred E
Confidence 3
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.29 E-value=0.0059 Score=51.31 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=78.3
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
++||-||-|.=.++..+++.++ ..+++ ++|..++.. ..+.+++....-.+..-+...|+.+.. + ..+||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~--gid~s~~~~---~~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLH--GYTISPEQA---EVGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEE--EEECCHHHH---HHHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence 4799999665556667888874 23444 555333332 135555544321222334445665431 2 24799
Q ss_pred EEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC---CCC----------CCcccHhhH
Q 041136 100 VIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---DHP----------YNQWNVMGL 164 (214)
Q Consensus 100 ~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---~~P----------y~~W~i~~l 164 (214)
.|+.+. -|++ -...+|+++..+|+|+|.+.++-.. ..+ .+.-.+..+
T Consensus 70 ~I~~~~~l~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 131 (224)
T smart00828 70 LVFGFEVIHHIK------------------DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAEL 131 (224)
T ss_pred EeehHHHHHhCC------------------CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHH
Confidence 998532 2221 1357899999999999998765211 000 011235567
Q ss_pred HHhcCCEEEEEecCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~ 181 (214)
.+++|+.+.+...+..+
T Consensus 132 l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 132 LARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHCCCeEEEeEECcHh
Confidence 88899999998877554
No 41
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.24 E-value=0.0066 Score=51.59 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=77.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH---- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~---- 90 (214)
.++++.+||-+|=|.=+|+..|++..+....|+|.=++. + . ...|+.++.+ |+++....
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~-~------------~~~~v~~i~~-D~~~~~~~~~i~ 110 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---M-D------------PIVGVDFLQG-DFRDELVLKALL 110 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---c-c------------CCCCcEEEec-CCCChHHHHHHH
Confidence 357788999998666667777888876544566655544 1 0 1135665554 88875310
Q ss_pred CCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 91 PTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 91 ~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
..+....||.|+-|. ||..+.. ..+ +..+-.++...++.+..+|++||.+.|.+..+..
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~---~~d---~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTP---AVD---IPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCCh---HHH---HHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 013457899999998 8885421 111 1123345788999999999999999887666553
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.15 E-value=0.0044 Score=49.22 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++.+||=+|=|.=-++..|++.+.++.+ .++.|..+++.+ .+..+++.+.-. -.-+...|++++.+. +. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~---~a~~~~~~~~~~-ni~~~~~d~~~l~~~--~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIE---YAKKRAKELGLD-NIEFIQGDIEDLPQE--LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHH---HHHHHHHHTTST-TEEEEESBTTCGCGC--SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHH---Hhhccccccccc-ccceEEeehhccccc--cC-C
Confidence 56789999995554455558876554334 778887666653 355555555433 345566888887653 33 7
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.||.|+.+.+-... .-...+++.+..+|+++|.+.++...
T Consensus 73 ~~D~I~~~~~l~~~----------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHF----------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGT----------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhc----------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 89999999664221 11235677899999999999877443
No 43
>PRK04457 spermidine synthase; Provisional
Probab=97.15 E-value=0.0013 Score=57.77 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...++||.||=|.-+++..|++.++ ...| |+.|..+++.+ -+.++...... ..+.|+.+ ||.+.-.. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v--~~VEidp~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~ 134 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQ--TAVEINPQVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HR 134 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeE--EEEECCHHHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CC
Confidence 3567899999999999999998874 3344 55555444442 24444332221 24566665 77653211 13
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||.|+.|.-+..... .......||+.|..+|+++|.+.|.+....|
T Consensus 135 ~~yD~I~~D~~~~~~~~------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 135 HSTDVILVDGFDGEGII------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCCEEEEeCCCCCCCc------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 57999999854422110 0112479999999999999999887654443
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.10 E-value=0.028 Score=48.84 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||.+|=|.=-.+..+++..+....|+ +.|..++..+ .+.+|++.+.-.++.++ .-|+..+. +.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~--gvD~s~~~l~---~A~~~~~~~g~~~v~~~-~~d~~~l~----~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVI--GVDMTPEMLA---KARANARKAGYTNVEFR-LGEIEALP----VA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEE--EECCCHHHHH---HHHHHHHHcCCCCEEEE-EcchhhCC----CC
Confidence 456889999999554222333566665433454 5664444332 36666655432233333 33565543 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-e-cCCC------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-L-RDDH------------------ 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l-~~~~------------------ 154 (214)
...||.|+.|.-..-.. + ....|+.+..+|++||.+.++ + ..+.
T Consensus 144 ~~~fD~Vi~~~v~~~~~----d------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (272)
T PRK11873 144 DNSVDVIISNCVINLSP----D------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAG 207 (272)
T ss_pred CCceeEEEEcCcccCCC----C------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccC
Confidence 56899999986322111 0 124566788999999999774 1 1111
Q ss_pred CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++...+..+.+.+|+...+....
T Consensus 208 ~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 208 ALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred CCCHHHHHHHHHHCCCCceEEEec
Confidence 122334667777889887665443
No 45
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.08 E-value=0.0062 Score=53.86 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=82.4
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCCCcc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
.+||-+|-|.=.++.+|+.... ...+ ++.|...+..+ -+.+|++.+.-.+ +.+ +.-|+.+ .+...+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v--~avDis~~al~---~a~~n~~~~~~~~~v~~-~~~d~~~-----~~~~~~f 183 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEV--IAVDISPDALA---VAEENAEKNQLEHRVEF-IQSNLFE-----PLAGQKI 183 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEE-EECchhc-----cCcCCCc
Confidence 6899999887788888988763 2344 55564443331 4777877664322 333 3335432 1333479
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH-
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD- 166 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~- 166 (214)
|.||.|.|-+.........+ .+. ....++..++..|..+|+++|.+.+.+-..+ .=.+.++..
T Consensus 184 DlIvsNPPyi~~~~~~~~~~--~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q---~~~~~~~~~~ 258 (284)
T TIGR00536 184 DIIVSNPPYIDEEDLADLPN--VVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ---QKSLKELLRI 258 (284)
T ss_pred cEEEECCCCCCcchhhcCCc--ccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH---HHHHHHHHHh
Confidence 99999999986532110110 000 1235788999999999999999987754322 123445544
Q ss_pred hcCCEEEE
Q 041136 167 KLGLVLKE 174 (214)
Q Consensus 167 ~~gl~l~~ 174 (214)
..|+.-.+
T Consensus 259 ~~~~~~~~ 266 (284)
T TIGR00536 259 KFTWYDVE 266 (284)
T ss_pred cCCCceeE
Confidence 35664333
No 46
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.03 E-value=0.0072 Score=56.47 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=88.7
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRH 90 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~ 90 (214)
++..+..+++||-+|-|.=+|+.+.+. +.+. -+|+.|..+...+ .+.+|++.+.-. ....+..-|+.+.-..
T Consensus 214 ~~~~~~~g~rVLDlfsgtG~~~l~aa~--~ga~--~V~~VD~s~~al~---~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 214 ATRRYVENKRVLNCFSYTGGFAVSALM--GGCS--QVVSVDTSQEALD---IARQNVELNKLDLSKAEFVRDDVFKLLRT 286 (396)
T ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHh--CCCC--EEEEEECCHHHHH---HHHHHHHHcCCCCCcEEEEEccHHHHHHH
Confidence 344566789999998444344433332 2233 3456675555442 477888776421 1223444576653211
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc----HhhHHH
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN----VMGLAD 166 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~----i~~lA~ 166 (214)
......+||.||.|.|-..... ..+..-..-+..++..|.++|+++|.+..+-|.+. .+... +.+.|.
T Consensus 287 ~~~~~~~fDlVilDPP~f~~~k-------~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~aa~ 358 (396)
T PRK15128 287 YRDRGEKFDVIVMDPPKFVENK-------SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIADAAI 358 (396)
T ss_pred HHhcCCCCCEEEECCCCCCCCh-------HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHHHH
Confidence 0012457999999999754311 11111222366777889999999999998877655 33222 445566
Q ss_pred hcCCEEEEEe-cCCCCCCC
Q 041136 167 KLGLVLKEKV-EFLKQDFP 184 (214)
Q Consensus 167 ~~gl~l~~~~-~F~~~~yP 184 (214)
++|-.+.-.. .-.+.++|
T Consensus 359 ~~~~~~~~l~~~~~~~DhP 377 (396)
T PRK15128 359 DAGRDVQFIEQFRQAADHP 377 (396)
T ss_pred HcCCeEEEEEEcCCCCCCC
Confidence 6665544322 23555555
No 47
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.00 E-value=0.0092 Score=49.24 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~ 91 (214)
..++++||-+|-|.=.++..+++.+.....|+|.-.+. +. ...++. ++..|+++.... .
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~--------------~~~~i~-~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK--------------PIENVD-FIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc--------------cCCCce-EEEeeCCChhHHHHHHH
Confidence 36788999999777777777888775444676664443 21 112444 445577653210 0
Q ss_pred CCCCCcccEEEEcC-CCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNF-PHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNF-PH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+...+||.|+.|. ||. |.. ..+ .-...+++..++..+..+|+++|.+.+..
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~----~~~---~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYW----DID---HLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCc----ccc---HHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 13356799999987 554 321 111 11234678899999999999999998864
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.91 E-value=0.015 Score=47.87 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||-|.=+++..+++... +.-.|++|..++..+ .+++|++.+.-.++.++.+ |+.. .+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~---~~~v~~vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFP---SLQVTAIERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-
Confidence 445788999999887788877888753 344667776554432 4677777664334555443 4421 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..+||.|+.+... . .+..++..+..+|+++|.+.+.... +.+.=++..+.++.|+...+
T Consensus 95 ~~~~D~v~~~~~~--~-----------------~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 95 PGKADAIFIGGSG--G-----------------NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CcCCCEEEECCCc--c-----------------CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 2479999987431 0 1245677889999999998765321 11233466788888986555
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 154 ~ 154 (187)
T PRK08287 154 C 154 (187)
T ss_pred E
Confidence 3
No 49
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.89 E-value=0.0012 Score=55.85 Aligned_cols=149 Identities=18% Similarity=0.263 Sum_probs=89.5
Q ss_pred CccccccCCCCCC-eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc
Q 041136 8 KKVKWISHYTNNQ-RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT 86 (214)
Q Consensus 8 ~~~~~~~~~~~~~-~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~ 86 (214)
+...|-..|.+.. -+|.||=|+=-|..++|+.+. ..|+++. |-...... .+...+....-.++.+ ...||..
T Consensus 6 ~~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGi--E~~~~~v~---~a~~~~~~~~l~Nv~~-~~~da~~ 78 (195)
T PF02390_consen 6 EPLDWQEIFGNDNPLILEIGCGKGEFLIELAKRNP-DINFIGI--EIRKKRVA---KALRKAEKRGLKNVRF-LRGDARE 78 (195)
T ss_dssp CTTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHST-TSEEEEE--ES-HHHHH---HHHHHHHHHTTSSEEE-EES-CTT
T ss_pred CccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHCC-CCCEEEE--ecchHHHH---HHHHHHHhhcccceEE-EEccHHH
Confidence 5666766676666 578888544445555887774 5566654 44333331 2444454444344555 5558887
Q ss_pred -CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 87 -MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 87 -L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
|... +...++|.|..|||-.=.+. +. ..+|-+=..|+.....+|++||.|++.- |..+|-.|-+..+.
T Consensus 79 ~l~~~--~~~~~v~~i~i~FPDPWpK~----rH----~krRl~~~~fl~~~~~~L~~gG~l~~~T-D~~~y~~~~~~~~~ 147 (195)
T PF02390_consen 79 LLRRL--FPPGSVDRIYINFPDPWPKK----RH----HKRRLVNPEFLELLARVLKPGGELYFAT-DVEEYAEWMLEQFE 147 (195)
T ss_dssp HHHHH--STTTSEEEEEEES-----SG----GG----GGGSTTSHHHHHHHHHHEEEEEEEEEEE-S-HHHHHHHHHHHH
T ss_pred HHhhc--ccCCchheEEEeCCCCCccc----ch----hhhhcCCchHHHHHHHHcCCCCEEEEEe-CCHHHHHHHHHHHH
Confidence 3322 44578999999999885431 11 1234455778888999999999997662 33568888888888
Q ss_pred H-hcCCEEEE
Q 041136 166 D-KLGLVLKE 174 (214)
Q Consensus 166 ~-~~gl~l~~ 174 (214)
. ..++....
T Consensus 148 ~~~~~f~~~~ 157 (195)
T PF02390_consen 148 ESHPGFENIE 157 (195)
T ss_dssp HHSTTEEEE-
T ss_pred hcCcCeEEcc
Confidence 8 47887764
No 50
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.88 E-value=0.041 Score=48.14 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~~VDAt~L~~~~~ 92 (214)
.-.++.+||-||=|.=.++..|++..++.. ..++.|..+++.+ .+.++....... .-.-+..-|+.++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~---~A~~r~~~~~~~~~~~i~~~~~d~~~lp---- 140 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLA---VAASRQELKAKSCYKNIEWIEGDATDLP---- 140 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHH---HHHHHhhhhhhccCCCeEEEEcccccCC----
Confidence 345688999998544445666888775433 4556775555442 233332211111 11234556777663
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|+.+|-..-.. + ...+++.+..+|+|||.+.|+
T Consensus 141 ~~~~sfD~V~~~~~l~~~~-------------d---~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVV-------------D---RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecccccCC-------------C---HHHHHHHHHHHcCcCcEEEEE
Confidence 5567899999887543221 1 245678899999999998665
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.88 E-value=0.02 Score=47.81 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||.||-|.=.++..+++.++. +.-.++.|..+...+ .+++++......+...+...|+.++. +....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 121 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGK--TGEVVGLDFSEGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS 121 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCC--CCeEEEEeCCHHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence 5689999997776777778887742 345666665444432 34444433211233344556887754 33467
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
||.|+.++=.... .-+..+++.+..+|+++|.+.+
T Consensus 122 ~D~I~~~~~l~~~----------------~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 122 FDAVTIAFGLRNV----------------PDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ccEEEEecccccC----------------CCHHHHHHHHHHhccCCcEEEE
Confidence 9999875422111 1134567888999999999854
No 52
>PRK00811 spermidine synthase; Provisional
Probab=96.87 E-value=0.0084 Score=53.28 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.++||.+|=|+-+.++.++++.+ ..+|++.-+|. ++.+ -+.+++..+. .-.+.+ +.-||.+.-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~--~vv~---~a~~~~~~~~~~~~~d~rv~v-~~~Da~~~l~~- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE--RVVE---VCRKYLPEIAGGAYDDPRVEL-VIGDGIKFVAE- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH--HHHH---HHHHHhHHhccccccCCceEE-EECchHHHHhh-
Confidence 4678999999999999998887533 33555555554 3332 2455555442 223444 44566653221
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.||-+.+..-... ....-..||+.++++|+++|.+.+-
T Consensus 147 --~~~~yDvIi~D~~dp~~~~------------~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 --TENSFDVIIVDSTDPVGPA------------EGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred --CCCcccEEEECCCCCCCch------------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3468999999964332110 1223578999999999999987653
No 53
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.068 Score=49.17 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=75.8
Q ss_pred EEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------cc
Q 041136 46 MVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QD 118 (214)
Q Consensus 46 l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~ 118 (214)
.+.+++|... -+. -..+|++.|...+ .++...|+..+... .....+||+|+-+=|+.|.+.=-++ ++
T Consensus 183 ~iV~A~D~~~~Rl~----~l~~nl~RlG~~n-v~~~~~d~~~~~~~-~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~ 256 (355)
T COG0144 183 AIVVAVDVSPKRLK----RLRENLKRLGVRN-VIVVNKDARRLAEL-LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT 256 (355)
T ss_pred ceEEEEcCCHHHHH----HHHHHHHHcCCCc-eEEEeccccccccc-ccccCcCcEEEECCCCCCCcccccCccccccCC
Confidence 4455666433 222 2344555554333 36777888776542 1223479999999999987531111 22
Q ss_pred HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHh-cCCEEEE
Q 041136 119 TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADK-LGLVLKE 174 (214)
Q Consensus 119 ~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~-~gl~l~~ 174 (214)
...+.....|=...+.+|.++|++||.+..+.|.-.|-- .=.|....++ .++.+..
T Consensus 257 ~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 257 PEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence 334555566777889999999999999999988876643 3334443333 3665554
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.85 E-value=0.035 Score=41.44 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+++||-+|-|.=.++..+++..+ . ...|+.|..+... ..+..|++.+...++. ++.-|+..... ...
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~-~--~~v~~vD~s~~~~---~~a~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 86 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP-N--GRVYAIERNPEAL---RLIERNARRFGVSNIV-IVEGDAPEALE---DSL 86 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-C--ceEEEEcCCHHHH---HHHHHHHHHhCCCceE-EEeccccccCh---hhc
Confidence 34567999999888777888888764 2 3346667544433 1356666665433333 33345543211 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+||.|+...+. ..+..+++.+.++|+++|.+.++.
T Consensus 87 ~~~D~v~~~~~~-------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSG-------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcc-------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 479999985421 013488999999999999998875
No 55
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.84 E-value=0.0073 Score=53.12 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L~~~~~ 92 (214)
++.++||.+|-|+-++++.++++. +..++++.-.|. ++.+ .+.+++..+. ...+.+.. -|+.+.-..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~--~vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~-- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDE--KVIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD-- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCH--HHHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh--
Confidence 345699999999999998888764 234566666654 3321 2444444332 22344443 455432111
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.||.+.|..-... ..-....||+.++.+|+++|.+.+.
T Consensus 142 -~~~~yDvIi~D~~~~~~~~------------~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 -TENTFDVIIVDSTDPVGPA------------ETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -CCCCccEEEEeCCCCCCcc------------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1368999999987542210 1123579999999999999998765
No 56
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.79 E-value=0.0088 Score=55.82 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|-=.||+.||+.. ..+ +++|..++..+ .+.+|++.+.-.++.++. -|+.++-....+...
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V--~~vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---KSV--VGIEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---CEE--EEEEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCC
Confidence 456789888754444455577653 234 66775555442 577888765433455444 466553111112345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCc-ccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQ-WNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~-W~i~~lA~~~gl~l~~~ 175 (214)
.||.||.|.|..|.. .++|... .. +++++-|+|+ |+ |-+. -++. +..+.||.+...
T Consensus 362 ~~D~vi~dPPr~G~~--------------~~~l~~l----~~-l~~~~ivyvs-c~--p~tlard~~-~l~~~gy~~~~~ 418 (431)
T TIGR00479 362 IPDVLLLDPPRKGCA--------------AEVLRTI----IE-LKPERIVYVS-CN--PATLARDLE-FLCKEGYGITWV 418 (431)
T ss_pred CCCEEEECcCCCCCC--------------HHHHHHH----Hh-cCCCEEEEEc-CC--HHHHHHHHH-HHHHCCeeEEEE
Confidence 799999999988742 2223221 11 5777656665 33 5332 2233 334678999999
Q ss_pred ecCCCCCCCCCcc
Q 041136 176 VEFLKQDFPGYHN 188 (214)
Q Consensus 176 ~~F~~~~yPgY~~ 188 (214)
.+|| +||.=.|
T Consensus 419 ~~~D--mFP~T~H 429 (431)
T TIGR00479 419 QPVD--MFPHTAH 429 (431)
T ss_pred EEec--cCCCCCC
Confidence 9999 8997555
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.76 E-value=0.042 Score=45.79 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
...++.+||-+|=|.=++|..+++..+... ..+++|..++..+ .+++|++.+. ..++.+ ..-|+.++-. .+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~--~v~avD~~~~~~~---~a~~n~~~~g~~~~v~~-~~~d~~~~l~--~~ 108 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETG--KVYAVDKDEKAIN---LTRRNAEKFGVLNNIVL-IKGEAPEILF--TI 108 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHH---HHHHHHHHhCCCCCeEE-EEechhhhHh--hc
Confidence 355778999999877667777887765433 4556665554442 4777887765 234444 3456654321 11
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
...||+|+-+. +.. -+..+++.+..+|+++|.+.+...+ +.+.=.+....++.|+...
T Consensus 109 -~~~~D~V~~~~---~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 109 -NEKFDRIFIGG---GSE----------------KLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGFNLE 166 (198)
T ss_pred -CCCCCEEEECC---Ccc----------------cHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCCCeE
Confidence 25799999864 110 1345788899999999999775332 1222345556677887544
Q ss_pred E
Q 041136 174 E 174 (214)
Q Consensus 174 ~ 174 (214)
.
T Consensus 167 ~ 167 (198)
T PRK00377 167 I 167 (198)
T ss_pred E
Confidence 3
No 58
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.75 E-value=0.033 Score=48.96 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++||+|||+|+ .|+|+|-.. .+.+| |.+|-.+.+.. ..+-.. ++.|.. -.+.-|..+= -|.--.+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~-~~~~I--~VvDiDeRll~----fI~~~a--~~~gl~i~~~~~DlR~~--LP~~~~~ 111 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTG-LPKRI--TVVDIDERLLD----FINRVA--EEEGLPIEAVHYDLRDP--LPEELRG 111 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT---SEE--EEE-S-HHHHH----HHHHHH--HHHT--EEEE---TTS-----TTTSS
T ss_pred cCCEEEEEcCCcH-HHHHHHhhC-CCCeE--EEEEcCHHHHH----HHHHHH--HHcCCceEEEEeccccc--CCHHHhc
Confidence 5789999999998 355555332 34454 45665555541 111111 222332 2333444431 1222357
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC-EEEEEecCCCC-CCcc-cHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG-EVHVTLRDDHP-YNQW-NVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G-~i~VTl~~~~P-y~~W-~i~~lA~~~gl~l~ 173 (214)
+||+++.+.|-+-. =+.-|+.-+-..|+..| .+.+.+....+ ...| ++.....+.|+.+.
T Consensus 112 ~fD~f~TDPPyT~~-----------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 112 KFDVFFTDPPYTPE-----------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp -BSEEEE---SSHH-----------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCCEEEeCCCCCHH-----------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 89999999998742 24557777888888655 66666665442 4667 68888889999998
Q ss_pred EEe
Q 041136 174 EKV 176 (214)
Q Consensus 174 ~~~ 176 (214)
+..
T Consensus 175 dii 177 (243)
T PF01861_consen 175 DII 177 (243)
T ss_dssp EEE
T ss_pred HHH
Confidence 843
No 59
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.74 E-value=0.021 Score=39.67 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=62.2
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||.+|.|.=.++..+++ . ....+++...+. +... .+.++..... ....-+...|+.+... .....||.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~--~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISP--VALE---LARKAAAALL-ADNVEVLKGDAEELPP---EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCH--HHHH---HHHHHHhccc-ccceEEEEcChhhhcc---ccCCceEE
Confidence 578999888888877877 2 234555554443 2221 1111111111 1223334566665442 23467999
Q ss_pred EEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 101 IIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|+.|+|.... ......+++.+..+|+++|.+.++
T Consensus 70 i~~~~~~~~~---------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL---------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh---------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999987542 345667778888899999999876
No 60
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.74 E-value=0.027 Score=46.79 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred EEecCchhHHHHHHHHhCCC----CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 24 LVGEGDFSFSDCLARAFGSA----TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 24 lVGeGnFSFS~sLa~~~~~~----~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+|-|.+---.++......+ ..+...+.|...+..+ .+.+|++...-.+...+...|+++|. +....+|
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~~d 108 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGSVD 108 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSBSC
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCCCC
Confidence 48999887776665443210 1223556665554442 57888877655455667778999997 4456899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|.|. |...+ . -..+++|...|++.++++|++ ..+.||
T Consensus 109 ~IvtnPPy-G~r~~----~---~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 109 AIVTNPPY-GRRLG----S---KKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp EEEEE--S-TTSHC----H---HHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred EEEECcch-hhhcc----C---HHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 99999998 32211 1 134588999999999999999 666666
No 61
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.035 Score=49.47 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=84.6
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||=+|-|.=.-|.+|+++.. ..+|+||=... +.+. -|..|++.+.-..+.++.+ |.- . .+.+ +||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~~l~~~~~~~~-dlf---~--~~~~-~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERNGLVRVLVVQS-DLF---E--PLRG-KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHcCCccEEEEee-ecc---c--ccCC-ceeE
Confidence 799999998888888888764 34677765544 3332 3677777765312223333 322 1 1333 8999
Q ss_pred EEEcCCCCCCCCCCCccc-------HHHH--HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC-C
Q 041136 101 IIFNFPHAGHSPPLSEQD-------TNLI--KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG-L 170 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~-------~~~i--~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g-l 170 (214)
||+|.|=+-......... ...+ ..-.++++.|+..+..+|+++|.+.+-+-.++ .=.+.++-.+.| +
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q---~~~v~~~~~~~~~~ 256 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ---GEAVKALFEDTGFF 256 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc---HHHHHHHHHhcCCc
Confidence 999999997641111110 0000 01357899999999999999998877755433 223556666777 4
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
....
T Consensus 257 ~~v~ 260 (280)
T COG2890 257 EIVE 260 (280)
T ss_pred eEEE
Confidence 4333
No 62
>PRK06922 hypothetical protein; Provisional
Probab=96.64 E-value=0.013 Score=58.04 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=74.9
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.++..+.+||-||=|.=.++..|++.+. +.-.++.|-.+.+.+ .+.+++.... .++.++.+ |+.++.. .
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P---~~kVtGIDIS~~MLe---~Ararl~~~g-~~ie~I~g-Da~dLp~--~ 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE---DKRIYGIDISENVID---TLKKKKQNEG-RSWNVIKG-DAINLSS--S 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHhhhcC-CCeEEEEc-chHhCcc--c
Confidence 55677789999998555445566887763 355667786555442 3444443221 23333333 7777643 2
Q ss_pred CCCCcccEEEEcCCCCCC--CCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGH--SPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~--~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+..++||.|++|++-.-. ..+..+. ..+.+-+..+++.+..+|++||.+.|.
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGK-----KFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccc-----cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 556789999999753210 0000000 123567888999999999999999886
No 63
>PLN02244 tocopherol O-methyltransferase
Probab=96.63 E-value=0.062 Score=48.88 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=84.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++..+||-||=|.=.++..|++.++ .++ |++|..+...+ .+.++++......-..+..-|+.++. +...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v--~gvD~s~~~i~---~a~~~~~~~g~~~~v~~~~~D~~~~~----~~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANV--KGITLSPVQAA---RANALAAAQGLSDKVSFQVADALNQP----FEDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEE--EEEECCHHHHH---HHHHHHHhcCCCCceEEEEcCcccCC----CCCC
Confidence 5678999999555556666888773 345 45564333321 23443332211112334445777653 4567
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cC--CCC----C-----------
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RD--DHP----Y----------- 156 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~--~~P----y----------- 156 (214)
.||.|+.+.- |... ...+|+.+..+|++||.+.|+- +. ..| .
T Consensus 186 ~FD~V~s~~~~~h~~d------------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i 247 (340)
T PLN02244 186 QFDLVWSMESGEHMPD------------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKI 247 (340)
T ss_pred CccEEEECCchhccCC------------------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHH
Confidence 8999998643 3221 2367888899999999987652 21 011 0
Q ss_pred ------Ccc----cHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 157 ------NQW----NVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 157 ------~~W----~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
..| .+..+++++||...+...+....-|-|.
T Consensus 248 ~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~ 288 (340)
T PLN02244 248 CAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWP 288 (340)
T ss_pred HhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHH
Confidence 012 4567888999998887766655445444
No 64
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.53 E-value=0.07 Score=46.78 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||-|.=..+..|++.++ .. .|+.|..+++.+ .+.++... .....+...|++++. +.
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~--~~--v~giD~s~~~~~---~a~~~~~~---~~~i~~~~~D~~~~~----~~ 114 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYG--AH--VHGVDICEKMVN---IAKLRNSD---KNKIEFEANDILKKD----FP 114 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcC--CE--EEEEECCHHHHH---HHHHHcCc---CCceEEEECCcccCC----CC
Confidence 467888999998554334555776653 34 455554333321 23333221 122334456776532 44
Q ss_pred CCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+. .|.+. +-...+|+.+..+|+|||.+.|+
T Consensus 115 ~~~FD~V~s~~~l~h~~~----------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSY----------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCCeEEEEEhhhHHhCCH----------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 57899999863 45432 11346778899999999999876
No 65
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.49 E-value=0.044 Score=49.45 Aligned_cols=122 Identities=23% Similarity=0.309 Sum_probs=82.8
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecC-ChHHHHhcCccHHHHHHHHHhCCC-EEEEcc-ccccCCCCCCCCCC
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLD-SERTLKTKHWTSQAHLQSLWSRGC-LVLHGV-NVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~V-DAt~L~~~~~~~~~ 96 (214)
..||-||-|.=.-|++|+..++ +.++|..| |...+. -|.+|.+.|+..|. .|.|++ .-.....++ +.-+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~ 221 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEG 221 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccC
Confidence 3799999998878888887775 67777778 444443 58899999998775 555442 222222332 3456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+.|.||.|.|-+-... ...-..+ ++. --..+.+|+.-|..+|.++|.+.+.+.
T Consensus 222 ~~dllvsNPPYI~~dD-~~~l~~e-V~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDD-NRQLKPE-VRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccc-hhhcCch-heecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 7999999999986521 1110001 111 135678999999999999999988876
No 66
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.48 E-value=0.048 Score=52.20 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=95.3
Q ss_pred CccccCcccccc--CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE
Q 041136 3 QKKSNKKVKWIS--HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV 78 (214)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V 78 (214)
|+.+++-.-.+. .=.++.+||=++ =|.=|.. ||..++....|+|.-.+... +. ...+|++.+--.+ .+
T Consensus 96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~--la~~l~~~g~lvA~D~~~~R-~~----~L~~nl~r~G~~n-v~ 167 (470)
T PRK11933 96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQ--IAALMNNQGAIVANEYSASR-VK----VLHANISRCGVSN-VA 167 (470)
T ss_pred ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHH--HHHHcCCCCEEEEEeCCHHH-HH----HHHHHHHHcCCCe-EE
Confidence 444444333322 335778887766 5666544 77777544456665544321 11 3456676653222 45
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+.+-|++++... ....||+|+-+=|+.|.+.-..+. ..+.+.....|=...+.+|..+|++||.+.-+-|+
T Consensus 168 v~~~D~~~~~~~---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 168 LTHFDGRVFGAA---LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEeCchhhhhhh---chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 666888887642 235699999999999875322221 11233445566678889999999999999888887
Q ss_pred CCC-CCcccHhhHHHhc
Q 041136 153 DHP-YNQWNVMGLADKL 168 (214)
Q Consensus 153 ~~P-y~~W~i~~lA~~~ 168 (214)
=.| -+.-+|..+.+++
T Consensus 245 ~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 245 LNREENQAVCLWLKETY 261 (470)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 555 3455666655554
No 67
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.39 E-value=0.081 Score=48.61 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||-|.=.+++.|++.++ +.+++ ..|-.+++.+ .+.++.. ..++.+ ..-|+.++. +...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~Vt--gVD~S~~mL~---~A~~k~~---~~~i~~-i~gD~e~lp----~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVT--ILDQSPHQLA---KAKQKEP---LKECKI-IEGDAEDLP----FPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence 4578999999776556667888774 23444 5664333332 2333322 124444 344555543 4457
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---------------CCcccH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP---------------YNQWNV 161 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P---------------y~~W~i 161 (214)
.||.||.+....-.. +. ...|+.+..+|++||.+.|+-.. .| ...-.+
T Consensus 178 sFDvVIs~~~L~~~~-------------d~---~~~L~e~~rvLkPGG~LvIi~~~-~p~~~~~r~~~~~~~~~~t~eEl 240 (340)
T PLN02490 178 YADRYVSAGSIEYWP-------------DP---QRGIKEAYRVLKIGGKACLIGPV-HPTFWLSRFFADVWMLFPKEEEY 240 (340)
T ss_pred ceeEEEEcChhhhCC-------------CH---HHHHHHHHHhcCCCcEEEEEEec-CcchhHHHHhhhhhccCCCHHHH
Confidence 899999875432221 01 13588899999999998665211 11 123345
Q ss_pred hhHHHhcCCEEEEEecCCCCCCCCC
Q 041136 162 MGLADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~F~~~~yPgY 186 (214)
.++++++||...+.....+..|+|-
T Consensus 241 ~~lL~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred HHHHHHCCCeEEEEEEcChhhcccc
Confidence 6788889999988888777666644
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.37 E-value=0.089 Score=44.45 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||.||-|.=+++..|++. + .++ |+.|..+...+ .+.+++..... .+. ++..|+..+.. ....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~iD~s~~~~~---~a~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~ 113 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-G--ADV--TGIDASEENIE---VARLHALESGL-KID-YRQTTAEELAA---EHPG 113 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--CeE--EEEcCCHHHHH---HHHHHHHHcCC-ceE-EEecCHHHhhh---hcCC
Confidence 35788999997665566667764 2 344 44564444331 34444443221 222 34456665532 2346
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------------
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------- 155 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------- 155 (214)
+||.|+.++. |.+. ...+++.+..+|+++|.+.++.....+
T Consensus 114 ~fD~Ii~~~~l~~~~~------------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 114 QFDVVTCMEMLEHVPD------------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred CccEEEEhhHhhccCC------------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 8999998643 3221 124678899999999999887532111
Q ss_pred --------CCcccHhhHHHhcCCEEEEE
Q 041136 156 --------YNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 156 --------y~~W~i~~lA~~~gl~l~~~ 175 (214)
++..++.+++.++||.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 12335778999999998874
No 69
>PLN02366 spermidine synthase
Probab=96.36 E-value=0.035 Score=50.21 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHH----HHhCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQS----LWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~----L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.++||+||=|+-+.++.|+++- +..+|++.-+|.. -++.++| +.. +..-.++++. -||...-+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~------f~~~~~~~~dpRv~vi~-~Da~~~l~-- 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKF------FPDLAVGFDDPRVNLHI-GDGVEFLK-- 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHh------hhhhccccCCCceEEEE-ChHHHHHh--
Confidence 567899999999999999998763 2345666666653 2333333 322 3333455554 46544211
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
....++||.||-+.+...+. ...-.-..||+.++.+|+++|.+.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~------------~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGP------------AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred hccCCCCCEEEEcCCCCCCc------------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 12246799999987654321 112235789999999999999873
No 70
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.28 E-value=0.018 Score=55.38 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=88.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..-+|.||=|+=.|...+|+.+. ..|+++.-.... .....+...+.. |+.++. -|+..+... +.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~-~~~~~~~~~--~~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFP-NNLDLILND--LP 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEc-CCHHHHHHh--cC
Confidence 456689999666566666888874 567777644321 112222333332 445544 488766654 67
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..++|.|..|||-.=.|.. =+++|-+=..|+.....+|++||.|++.- |..+|-.|-+..+.+..++....
T Consensus 415 ~~sv~~i~i~FPDPWpKkr--------h~krRl~~~~fl~~~~~~Lk~gG~i~~~T-D~~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNK--------QKKKRIFNKERLKILQDKLKDNGNLVFAS-DIENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred cccccEEEEECCCCCCCCC--------CccccccCHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhCCCeEecc
Confidence 7889999999998865421 02234445778888899999999998763 34568888777776666677643
No 71
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.26 E-value=0.079 Score=49.86 Aligned_cols=138 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|.=.||.+||+.. .. .++.|..++..+ .|.+|++.+.-.++ -+..-|+.+.-....+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---~~--V~gvD~s~~al~---~A~~n~~~~~~~~v-~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---AE--VVGVEGVEAMVE---RARENARRNGLDNV-TFYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---CE--EEEEeCCHHHHH---HHHHHHHHcCCCce-EEEEeChHHhhhhhhhhcC
Confidence 456789888844444555577764 23 456775555442 57778776543333 4445566543211113345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||.|.|..|.. +++.. + .. +++++-|+|+- .|-+ --++..| .+.||.+.+.
T Consensus 367 ~fD~Vi~dPPr~g~~---------------~~~~~-l---~~-~~~~~ivyvSC---np~tlaRDl~~L-~~~gY~l~~i 422 (443)
T PRK13168 367 GFDKVLLDPPRAGAA---------------EVMQA-L---AK-LGPKRIVYVSC---NPATLARDAGVL-VEAGYRLKRA 422 (443)
T ss_pred CCCEEEECcCCcChH---------------HHHHH-H---Hh-cCCCeEEEEEe---ChHHhhccHHHH-hhCCcEEEEE
Confidence 799999999998841 12211 1 11 47777777772 2311 2334434 2579999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.||| +||.=.|-
T Consensus 423 ~~~D--mFP~T~Hv 434 (443)
T PRK13168 423 GMLD--MFPHTGHV 434 (443)
T ss_pred EEec--cCCCCCcE
Confidence 9999 89976664
No 72
>PRK08317 hypothetical protein; Provisional
Probab=96.25 E-value=0.093 Score=43.46 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=66.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.+..++.+||-+|-|.=.++..+++.+++..+++++..+.. ..+ .+..+.. ..+. ..+...|++.+.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~--~~~---~a~~~~~---~~~~~~~~~~~d~~~~~---- 82 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA--MLA---LAKERAA---GLGPNVEFVRGDADGLP---- 82 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH--HHH---HHHHHhh---CCCCceEEEecccccCC----
Confidence 45667889999997777778888888754456666655432 221 2333311 1122 333444666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.+.-..-.. + ...+++.+..+|+++|.+.+.-
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-------------~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-------------D---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCCceEEEEechhhccC-------------C---HHHHHHHHHHHhcCCcEEEEEe
Confidence 3457899999874322110 1 2456778889999999997653
No 73
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.24 E-value=0.013 Score=50.02 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=61.3
Q ss_pred CCCCCCeEEE--EecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILL--VGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILl--VGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
-..++.+||- .|=|-||.. +|++. .+..|+|--.....- ....+|++..+-.+....+.-||.++-.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~--~ak~~-~~~~V~A~d~Np~a~-----~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLP--IAKHG-KAKRVYAVDLNPDAV-----EYLKENIRLNKVENRIEVINGDAREFLP--- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHH--HHHHT--SSEEEEEES-HHHH-----HHHHHHHHHTT-TTTEEEEES-GGG------
T ss_pred cCCcceEEEEccCCccHHHHH--Hhhhc-CccEEEEecCCHHHH-----HHHHHHHHHcCCCCeEEEEcCCHHHhcC---
Confidence 3567778765 467766666 66643 345688776665432 1356788777766777788999998753
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
...||+||.|.|+... .|+..|..+++++|-+|
T Consensus 167 --~~~~drvim~lp~~~~--------------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPESSL--------------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSGG--------------------GGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHHHH--------------------HHHHHHHHHhcCCcEEE
Confidence 5789999999999652 36666888889988887
No 74
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.21 E-value=0.069 Score=46.19 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.+|..|++. + .++ |+.|..++..+ .+++++..........+...|+.++.. +...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g--~~v--~~vD~s~~~l~---~a~~~~~~~g~~~~v~~~~~d~~~l~~---~~~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G--HQV--ILCDLSAEMIQ---RAKQAAEAKGVSDNMQFIHCAAQDIAQ---HLET 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C--CEE--EEEECCHHHHH---HHHHHHHhcCCccceEEEEcCHHHHhh---hcCC
Confidence 45679999995555566668775 2 344 55676555442 355555443211112345557776643 2346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.+....-.. +. ..++..+..+|+|||.+.|+.
T Consensus 112 ~fD~V~~~~vl~~~~-------------~~---~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 112 PVDLILFHAVLEWVA-------------DP---KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCEEEehhHHHhhC-------------CH---HHHHHHHHHHcCCCeEEEEEE
Confidence 899999876532110 11 256778889999999997763
No 75
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.21 E-value=0.027 Score=51.35 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhC-CCEEEEccccccCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSR-GCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~-g~~Vl~~VDAt~L~~~~ 91 (214)
.|-....+||=||-|-=--+..|+.... +..++||-.|...- . .|++|++.. .-. .+.++...|...+-..-
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al-~----~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i 183 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQAL-A----SAQAIISANPGLNGAIRLRLQKDSKAIFKGI 183 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHH-H----HHHHHHHhccCCcCcEEEEEccchhhhhhcc
Confidence 3445678999999994233333444332 46799987775432 2 478888876 222 35555555655544321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHH---HHHhHH--HHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNL---IKRHKN--LLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~---i~~n~~--LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.....+||.||.|.|............... +..|+. -...|=..+.+|+.+||++-+.
T Consensus 184 ~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi 246 (321)
T PRK11727 184 IHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFI 246 (321)
T ss_pred cccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeee
Confidence 113568999999999986532111101000 011111 0122223567888899997444
No 76
>PRK04266 fibrillarin; Provisional
Probab=96.20 E-value=0.25 Score=42.68 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=79.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++.+||-+|=|.=.++..|++..+ .. ..+++|..++..+ ...++.+.. .++..+ .-|++.......+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g--~V~avD~~~~ml~---~l~~~a~~~--~nv~~i-~~D~~~~~~~~~l 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EG--VVYAVEFAPRPMR---ELLEVAEER--KNIIPI-LADARKPERYAHV 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CC--eEEEEECCHHHHH---HHHHHhhhc--CCcEEE-ECCCCCcchhhhc
Confidence 4567889999999665456666888775 22 4555676654432 122233221 355544 3466643211123
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC------CCCCcc--cHhhHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD------HPYNQW--NVMGLA 165 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~------~Py~~W--~i~~lA 165 (214)
. .+||.|+-+.|.. ++ ...+++.+..+|+|||.+.|++... .| ..| +..+..
T Consensus 139 ~-~~~D~i~~d~~~p----------------~~--~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l 198 (226)
T PRK04266 139 V-EKVDVIYQDVAQP----------------NQ--AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKL 198 (226)
T ss_pred c-ccCCEEEECCCCh----------------hH--HHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHH
Confidence 2 4599998554420 01 1235677888999999999975431 11 111 134677
Q ss_pred HhcCCEEEEEecC
Q 041136 166 DKLGLVLKEKVEF 178 (214)
Q Consensus 166 ~~~gl~l~~~~~F 178 (214)
+.+||...+...+
T Consensus 199 ~~aGF~~i~~~~l 211 (226)
T PRK04266 199 EEGGFEILEVVDL 211 (226)
T ss_pred HHcCCeEEEEEcC
Confidence 7889999887654
No 77
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.19 E-value=0.028 Score=48.87 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=91.2
Q ss_pred ccccccCCCCC--CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEcccc
Q 041136 9 KVKWISHYTNN--QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNV 84 (214)
Q Consensus 9 ~~~~~~~~~~~--~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDA 84 (214)
..+|-.-|.+. .-+|.||=|.=.|-..+|+... ..+.++.-.-. .. ...-++.+.+.|+ .-+...||
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~--~~------v~~~l~k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRV--PG------VAKALKKIKELGLKNLRLLCGDA 107 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEeh--HH------HHHHHHHHHHcCCCcEEEEcCCH
Confidence 44455556666 3689999777777878898874 56777653322 21 2223455555555 45677899
Q ss_pred ccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhH
Q 041136 85 HTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGL 164 (214)
Q Consensus 85 t~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~l 164 (214)
+.+-.+ .+..++.|+|..|||-.=.|. + =.++|-+=..|++-..++|++||.||+.-- -..|-.|.+...
T Consensus 108 ~~~l~~-~~~~~sl~~I~i~FPDPWpKk----R----H~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD-~~~y~e~~~~~~ 177 (227)
T COG0220 108 VEVLDY-LIPDGSLDKIYINFPDPWPKK----R----HHKRRLTQPEFLKLYARKLKPGGVLHFATD-NEEYFEWMMLEV 177 (227)
T ss_pred HHHHHh-cCCCCCeeEEEEECCCCCCCc----c----ccccccCCHHHHHHHHHHccCCCEEEEEec-CHHHHHHHHHHH
Confidence 988764 233458999999999875432 0 022344557888889999999999988733 345777855544
Q ss_pred HHh
Q 041136 165 ADK 167 (214)
Q Consensus 165 A~~ 167 (214)
...
T Consensus 178 ~~~ 180 (227)
T COG0220 178 LEH 180 (227)
T ss_pred Hhc
Confidence 433
No 78
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.09 E-value=0.085 Score=44.08 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|-|.=.+|..||+. + . .+|++|..++..+ .+.+++....-.++. ....|+..+. +
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~-g--~--~V~gvD~S~~~i~---~a~~~~~~~~~~~v~-~~~~d~~~~~----~- 92 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN-G--F--DVTAWDKNPMSIA---NLERIKAAENLDNLH-TAVVDLNNLT----F- 92 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC-C--C--EEEEEeCCHHHHH---HHHHHHHHcCCCcce-EEecChhhCC----c-
Confidence 4556789999996555566668774 2 2 4566686554442 244443332111222 2234544331 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl 150 (214)
...||.|+.++...-. +...+..+++.+..+|++||.+ .++.
T Consensus 93 ~~~fD~I~~~~~~~~~--------------~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 93 DGEYDFILSTVVLMFL--------------EAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CCCcCEEEEecchhhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3569999988764221 2345678999999999999995 4443
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.08 E-value=0.11 Score=43.74 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=66.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+++||-||-|.=.++..|++..+... ..++.|..+++.+ .+++|++.+.-.+...+..-|+.+.- ....
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g--~V~~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~----~~~~ 141 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRG--KVYTVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGL----EKHA 141 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCC--EEEEEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCC----ccCC
Confidence 5678999999777677777888775333 4567776666552 46777776543232334555766432 1235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+||+|+.+.+-.. + . ......|++||.+.+.+.+
T Consensus 142 ~fD~Ii~~~~~~~------------~------~----~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 142 PFDAIIVTAAAST------------I------P----SALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred CccEEEEccCcch------------h------h----HHHHHhcCcCcEEEEEEcC
Confidence 8999999865211 1 1 1234678999999887644
No 80
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.06 E-value=0.078 Score=43.74 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++..+++.++. +.-.++.|..++..+ .+.+++. + ..++. +...|+.++. +...
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~---~~~~~~~-~-~~~i~-~~~~d~~~~~----~~~~ 105 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLE---VAKKKSE-L-PLNIE-FIQADAEALP----FEDN 105 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHH---HHHHHhc-c-CCCce-EEecchhcCC----CCCC
Confidence 36789999997777777778888742 244566665444331 3444443 1 12333 4457777654 3346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.++--... .-+..+++++..+|++||.+.+.
T Consensus 106 ~~D~i~~~~~~~~~----------------~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 106 SFDAVTIAFGLRNV----------------TDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred cEEEEEEeeeeCCc----------------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 79999987643221 01346789999999999998653
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.04 E-value=0.13 Score=43.46 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+++++||-+|-|.=.++..|++..+... ..++.|..+++.+ .+++|++.+.-.++.++. .|+..... ..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g--~V~~vD~~~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~ 144 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDG--LVVSIERIPELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PL 144 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCC--EEEEEeCCHHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----cc
Confidence 46788999999777677777888875433 3455565555542 577787776543455444 46654321 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.+||+|+.+.+-... . ......|++||.+.+.+.+
T Consensus 145 ~~fD~Ii~~~~~~~~------------------~----~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------------------P----EALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCCcccc------------------c----HHHHHhcCcCcEEEEEEcC
Confidence 579999998653221 1 1134578999999887644
No 82
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.96 E-value=0.1 Score=44.49 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+..+||-||=|.=.++..|++.+.. .+...|++|..+++.+ .++++++.... ..+.+ ..-|+.++. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-p~~~v~gvD~s~~ml~---~a~~~~~~~~~~~~v~~-~~~d~~~~~----~-- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-PNVKIIGIDNSQPMVE---RCRQHIAAYHSEIPVEI-LCNDIRHVE----I-- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEE-EECChhhCC----C--
Confidence 46789999996666677778887531 2456778886555542 46666654321 12344 445777653 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+|.|+.++.-.-. +..-...+++.+..+|++||.+.++
T Consensus 121 ~~~d~v~~~~~l~~~--------------~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 KNASMVILNFTLQFL--------------PPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCEEeeecchhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 248999988752211 0111346788888999999999887
No 83
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.89 E-value=0.015 Score=42.92 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=60.1
Q ss_pred EEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEE
Q 041136 22 ILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVI 101 (214)
Q Consensus 22 ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~I 101 (214)
||-+|=|.=.....|++.+..+.+...++.|-.++..+ .+.++... ....++ ++--|++++. ....+||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~---~~~~~~~~-~~~~~~-~~~~D~~~l~----~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLE---LAKKRFSE-DGPKVR-FVQADARDLP----FSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHH---HHHHHSHH-TTTTSE-EEESCTTCHH----HHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHH---HHHHhchh-cCCceE-EEECCHhHCc----ccCCCeeEE
Confidence 67888777777777998873223467778885444432 24444443 112344 4677887764 345689999
Q ss_pred EEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC
Q 041136 102 IFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG 144 (214)
Q Consensus 102 iFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G 144 (214)
++. +.|. .++-+..+|++..++|+|+|
T Consensus 72 ~~~~~~~~~~----------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHL----------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGS----------------SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCC----------------CHHHHHHHHHHHHHHhCCCC
Confidence 993 3342 35567888888999999887
No 84
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.88 E-value=0.087 Score=45.51 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.++.+||-|| .|..+.. |++.+. ..+...|++|..+++.+ .+.++++......-.-++.-|+..+. +
T Consensus 55 ~~~~~vLDlGcGtG~~~~~--l~~~~~-~~~~~v~gvD~S~~ml~---~A~~~~~~~~~~~~v~~~~~d~~~~~----~- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLS--VRRNIH-HDNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDVIEGDIRDIA----I- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHH--HHHhcC-CCCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEEEeCChhhCC----C-
Confidence 4678999997 5665544 676432 12466788896555542 46666655432222334556666543 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+|.||.|+...-. +..-...+++.+..+|+|||.+.++
T Consensus 124 -~~~D~vv~~~~l~~l--------------~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 -ENASMVVLNFTLQFL--------------EPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -CCCCEEehhhHHHhC--------------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 348999998764321 1112356778889999999999776
No 85
>PHA03411 putative methyltransferase; Provisional
Probab=95.87 E-value=0.098 Score=46.95 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||-+| -|.++.. +++..+ +.+|++ .|..+.+.+ .+++|+ .++.+ +.-|+..+. ..
T Consensus 64 ~~grVLDLGcGsGilsl~--la~r~~-~~~V~g--VDisp~al~---~Ar~n~-----~~v~~-v~~D~~e~~-----~~ 124 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFC--MLHRCK-PEKIVC--VELNPEFAR---IGKRLL-----PEAEW-ITSDVFEFE-----SN 124 (279)
T ss_pred cCCeEEEcCCCCCHHHHH--HHHhCC-CCEEEE--EECCHHHHH---HHHHhC-----cCCEE-EECchhhhc-----cc
Confidence 356899987 6666554 665542 235554 454444332 233332 13443 445666542 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHh------HHH-HHHHHHHHHhccCCCCEEEEEecCCCCC-----CcccHhh
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRH------KNL-LEAFLKNGREMLGEGGEVHVTLRDDHPY-----NQWNVMG 163 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n------~~L-L~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-----~~W~i~~ 163 (214)
.+||.||.|.|..... ..++. +..+.. ..| +..|++....+|.++|.+.+ +-++.|+ +.=....
T Consensus 125 ~kFDlIIsNPPF~~l~--~~d~~-~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~-~yss~~~y~~sl~~~~y~~ 200 (279)
T PHA03411 125 EKFDVVISNPPFGKIN--TTDTK-DVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF-AYSGRPYYDGTMKSNKYLK 200 (279)
T ss_pred CCCcEEEEcCCccccC--chhhh-hhhhhccCccccccccHHHHHhhhHheecCCceEEE-EEeccccccccCCHHHHHH
Confidence 5799999999998642 22221 111221 233 68999999999999995533 3666663 2334556
Q ss_pred HHHhcCCEEEE
Q 041136 164 LADKLGLVLKE 174 (214)
Q Consensus 164 lA~~~gl~l~~ 174 (214)
+-+.+||++..
T Consensus 201 ~l~~~g~~~~~ 211 (279)
T PHA03411 201 WSKQTGLVTYA 211 (279)
T ss_pred HHHhcCcEecC
Confidence 78888988743
No 86
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.12 Score=46.46 Aligned_cols=137 Identities=21% Similarity=0.321 Sum_probs=89.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+++++||-+|=|==+.+.=.|+.++ ++|+++++..+ ++. .++ +.+++.|......|- |..+..+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~-Q~~----~~~---~r~~~~gl~~~v~v~---l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEE-QLA----YAE---KRIAARGLEDNVEVR---LQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHH-HHH----HHH---HHHHHcCCCcccEEE---eccccccc
Confidence 568899999999888888877899984 68888887643 322 133 235555655222221 22233344
Q ss_pred CCcccEEEE--cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE--EEEecCCCCC--------------
Q 041136 95 QMKFDVIIF--NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV--HVTLRDDHPY-------------- 156 (214)
Q Consensus 95 ~~~FD~IiF--NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i--~VTl~~~~Py-------------- 156 (214)
.. ||+||. .|=|+|.. =...||+.+..+|+++|.+ |......+|+
T Consensus 136 e~-fDrIvSvgmfEhvg~~----------------~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPg 198 (283)
T COG2230 136 EP-FDRIVSVGMFEHVGKE----------------NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPG 198 (283)
T ss_pred cc-cceeeehhhHHHhCcc----------------cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCC
Confidence 33 999987 57777742 2578999999999999997 3222222111
Q ss_pred ----CcccHhhHHHhcCCEEEEEecCCCC
Q 041136 157 ----NQWNVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 157 ----~~W~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
....|...+.+.|+.+.....|.+.
T Consensus 199 G~lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 199 GELPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred CcCCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 3455667788889988887666544
No 87
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.54 E-value=0.23 Score=44.09 Aligned_cols=107 Identities=12% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.++...+||=||=|.=+++.++++.+. ++.+|.+|..+.+. .+.+|++.....+-.-....|+-+.. +.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~~~~----~a~~~~~~~gl~~rv~~~~~d~~~~~----~~ 214 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPGAID----LVNENAAEKGVADRMRGIAVDIYKES----YP 214 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHHHHH----HHHHHHHhCCccceEEEEecCccCCC----CC
Confidence 467889999999666677777999874 46678888743332 35666655432221223344554321 22
Q ss_pred CCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+|.|+. +..|.- +.+.....|+.+...|+|||.+.|.
T Consensus 215 --~~D~v~~~~~lh~~---------------~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 215 --EADAVLFCRILYSA---------------NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred --CCCEEEeEhhhhcC---------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2688764 444432 1223455677788999999999776
No 88
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=95.47 E-value=0.11 Score=36.48 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=57.3
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-+|=|.=.++..|++. .+.+++++ |..++..+ .+. +.+...++. +...|++++. +....||.|+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~--D~~~~~~~---~~~---~~~~~~~~~-~~~~d~~~l~----~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGI--DISEEMLE---QAR---KRLKNEGVS-FRQGDAEDLP----FPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEE--ES-HHHHH---HHH---HHTTTSTEE-EEESBTTSSS----S-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEE--eCCHHHHH---HHH---hcccccCch-heeehHHhCc----cccccccccc
Confidence 56777777777778887 33455555 43333221 111 222333444 7777888873 6678999999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+.=.. +-+-...+++.+..+|+++|.+.|
T Consensus 66 ~~~~~~----------------~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLH----------------HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGG----------------GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccee----------------eccCHHHHHHHHHHHcCcCeEEeC
Confidence 875321 113456788889999999999865
No 89
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.45 E-value=0.11 Score=48.27 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||=|.=.++..+++.++ ..|+++.+. ++.+. .+.++++. .++.+. ..|+..+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS-~~~l~----~A~~~~~~---l~v~~~-~~D~~~l------- 225 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTIS-AEQQK----LAQERCAG---LPVEIR-LQDYRDL------- 225 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCC-HHHHH----HHHHHhcc---CeEEEE-ECchhhc-------
Confidence 346788999999766667777888764 355544333 23322 34444432 223322 2344433
Q ss_pred CCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+ |-|+|.. -+..+|+.+..+|+|||.+.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~----------------~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPK----------------NYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCCCCEEEEeCchhhCChH----------------HHHHHHHHHHHHcCCCcEEEEE
Confidence 3579999865 4566531 2446888999999999998765
No 90
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=95.39 E-value=0.11 Score=45.46 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.+||=|| .||+++. |++..+ +--+|..|..+.+++ .+.+-+..+.-.+ .-+..-||.+|. |..
T Consensus 51 ~g~~vLDva~GTGd~a~~--~~k~~g---~g~v~~~D~s~~ML~---~a~~k~~~~~~~~-i~fv~~dAe~LP----f~D 117 (238)
T COG2226 51 PGDKVLDVACGTGDMALL--LAKSVG---TGEVVGLDISESMLE---VAREKLKKKGVQN-VEFVVGDAENLP----FPD 117 (238)
T ss_pred CCCEEEEecCCccHHHHH--HHHhcC---CceEEEEECCHHHHH---HHHHHhhccCccc-eEEEEechhhCC----CCC
Confidence 789998876 8888776 899886 456677885555442 3444344333334 445566999885 888
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||+|...|=- || -.=....++.+..+|+|||++.|. --.+|
T Consensus 118 ~sFD~vt~~fgl---------rn-------v~d~~~aL~E~~RVlKpgG~~~vl-e~~~p 160 (238)
T COG2226 118 NSFDAVTISFGL---------RN-------VTDIDKALKEMYRVLKPGGRLLVL-EFSKP 160 (238)
T ss_pred CccCEEEeeehh---------hc-------CCCHHHHHHHHHHhhcCCeEEEEE-EcCCC
Confidence 999999886622 11 112334456678999999976554 33344
No 91
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.36 E-value=0.25 Score=44.38 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|=|.=.|++.||+. +.. +++.|..++..+ .+.+|++.+.-.++.+ ...|+.++... . ...|
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~--V~gvD~s~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~--~-~~~~ 241 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQ--LTGIEISAEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA--Q-GEVP 241 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCE--EEEEeCCHHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh--c-CCCC
Confidence 578988875555556667773 224 456664444432 5777877664323433 45677665321 1 2369
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEEEec
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~~~~ 177 (214)
|.||.|.|..|... .+ .++|.. +.+++-|+|+ |+ |.. --++..+ .||.+.+..+
T Consensus 242 D~Vv~dPPr~G~~~--------~~---~~~l~~--------~~~~~ivyvs-c~--p~t~~rd~~~l---~~y~~~~~~~ 296 (315)
T PRK03522 242 DLVLVNPPRRGIGK--------EL---CDYLSQ--------MAPRFILYSS-CN--AQTMAKDLAHL---PGYRIERVQL 296 (315)
T ss_pred eEEEECCCCCCccH--------HH---HHHHHH--------cCCCeEEEEE-CC--cccchhHHhhc---cCcEEEEEEE
Confidence 99999999887521 01 111211 3555555665 33 211 2234444 6999999999
Q ss_pred CCCCCCCCCcccc
Q 041136 178 FLKQDFPGYHNKR 190 (214)
Q Consensus 178 F~~~~yPgY~~~r 190 (214)
|| +||.=.|-.
T Consensus 297 ~D--mFP~T~HvE 307 (315)
T PRK03522 297 FD--MFPHTAHYE 307 (315)
T ss_pred ec--cCCCCCeEE
Confidence 99 899877643
No 92
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.34 E-value=0.14 Score=42.77 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~~~~ 96 (214)
...+||-+|-|.=.+|..||+. + ..| |++|..++..+ .+.++.+ ..|+.+ ....|+... .+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g--~~V--~~iD~s~~~l~---~a~~~~~---~~~~~v~~~~~d~~~~----~~-~~ 93 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G--YDV--RAWDHNPASIA---SVLDMKA---RENLPLRTDAYDINAA----AL-NE 93 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C--CeE--EEEECCHHHHH---HHHHHHH---HhCCCceeEeccchhc----cc-cC
Confidence 4579999997776677778874 2 344 55675444442 1333332 223331 122333322 12 24
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
+||.|+.+++..-. +...+..+++.+..+|++||.+.|
T Consensus 94 ~fD~I~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 94 DYDFIFSTVVFMFL--------------QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCCEEEEecccccC--------------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 69999988764321 233566788999999999999533
No 93
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.31 E-value=0.11 Score=44.11 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEecCchhHHH-HHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSD-CLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~-sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+.+||-+|=|.=+++. +|++. +. -+++.|...+..+ .+.+|++.+.-.++.+ +.-|+.+.-..
T Consensus 50 ~~~~~~~vLDl~~GsG~l~l~~lsr~---a~--~V~~vE~~~~a~~---~a~~Nl~~~~~~~v~~-~~~D~~~~l~~--- 117 (199)
T PRK10909 50 PVIVDARCLDCFAGSGALGLEALSRY---AA--GATLLEMDRAVAQ---QLIKNLATLKAGNARV-VNTNALSFLAQ--- 117 (199)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHcC---CC--EEEEEECCHHHHH---HHHHHHHHhCCCcEEE-EEchHHHHHhh---
Confidence 33567899988744334443 24432 22 3556676555542 5778888775334444 44576542111
Q ss_pred CCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....||.|++|.| +.|. ..+++.... ...+|.++|-|+|.+..
T Consensus 118 ~~~~fDlV~~DPPy~~g~--------------~~~~l~~l~--~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 118 PGTPHNVVFVDPPFRKGL--------------LEETINLLE--DNGWLADEALIYVESEV 161 (199)
T ss_pred cCCCceEEEECCCCCCCh--------------HHHHHHHHH--HCCCcCCCcEEEEEecC
Confidence 1346999999999 4442 233444332 24678898888888543
No 94
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.26 E-value=0.28 Score=44.66 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.+||-||=|.=-++..|++. + ...|++|..++..+ .+..+.+.... .++. +...|+.++. +..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g----~~V~GID~s~~~i~---~Ar~~~~~~~~~~~i~-~~~~dae~l~----~~~~ 197 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G----ATVTGVDAVDKNVK---IARLHADMDPVTSTIE-YLCTTAEKLA----DEGR 197 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C----CEEEEEeCCHHHHH---HHHHHHHhcCccccee-EEecCHHHhh----hccC
Confidence 4579999994444456667753 2 24578886665542 23333222111 1233 3445676653 2356
Q ss_pred cccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC------------------CC-
Q 041136 97 KFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD------------------HP- 155 (214)
Q Consensus 97 ~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~------------------~P- 155 (214)
+||.|+... -|+.. ...|++....+|+|||.+.|+--+. .|
T Consensus 198 ~FD~Vi~~~vLeHv~d------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~ 259 (322)
T PLN02396 198 KFDAVLSLEVIEHVAN------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK 259 (322)
T ss_pred CCCEEEEhhHHHhcCC------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC
Confidence 899999854 23321 2468888899999999998873211 11
Q ss_pred -CCcc-------cHhhHHHhcCCEEEEE
Q 041136 156 -YNQW-------NVMGLADKLGLVLKEK 175 (214)
Q Consensus 156 -y~~W-------~i~~lA~~~gl~l~~~ 175 (214)
...| .+..+.+++|+.+.+.
T Consensus 260 gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 260 GTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 1223 3677888899988775
No 95
>PTZ00146 fibrillarin; Provisional
Probab=95.25 E-value=1 Score=40.66 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=79.8
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
++.++.++||-+|=|.=+|+..|++..+....|+|.-+. +++.+ .-++.. +..++..+. -|++...++..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~------dLl~~ak~r~NI~~I~-~Da~~p~~y~~ 198 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGR------DLTNMAKKRPNIVPII-EDARYPQKYRM 198 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHH------HHHHHhhhcCCCEEEE-CCccChhhhhc
Confidence 467889999999977767777799988755567776433 22111 001111 114565544 37765332222
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-----CC----CCcccHhh
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-----HP----YNQWNVMG 163 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-----~P----y~~W~i~~ 163 (214)
+. ..||+|+.+.... ++. +.++ ..|..+|+++|.+.|.++.. .| +. +.+ +
T Consensus 199 ~~-~~vDvV~~Dva~p-------dq~-------~il~----~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~ 257 (293)
T PTZ00146 199 LV-PMVDVIFADVAQP-------DQA-------RIVA----LNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-Q 257 (293)
T ss_pred cc-CCCCEEEEeCCCc-------chH-------HHHH----HHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-H
Confidence 22 3699999988521 110 1122 23788899999998875532 12 12 334 5
Q ss_pred HHHhcCCEEEEEecC
Q 041136 164 LADKLGLVLKEKVEF 178 (214)
Q Consensus 164 lA~~~gl~l~~~~~F 178 (214)
..++.||...+.+..
T Consensus 258 ~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 258 KLKKEGLKPKEQLTL 272 (293)
T ss_pred HHHHcCCceEEEEec
Confidence 567889998876654
No 96
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.25 E-value=0.026 Score=49.24 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=|+-+-++.|.++. +...|++.-+|..- ++.++|-.....- ++.-.++|++ -||...-+. ...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~--~~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKE--TQE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHT--SSS
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHh--ccC
Confidence 478999999999998888888764 23467766666542 4444442111111 4444566644 466542221 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHhcCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADKLGL 170 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~~gl 170 (214)
++||.||-+-+...+.. .+ ..-..||+.++..|+++|-+.+-. +.|+ ..+.+....+...-
T Consensus 149 ~~yDvIi~D~~dp~~~~-----------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPA-----------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp T-EEEEEEESSSTTSCG-----------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS
T ss_pred CcccEEEEeCCCCCCCc-----------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC
Confidence 28999999988733211 12 356899999999999999987765 2332 33445544444444
No 97
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.23 E-value=0.14 Score=48.03 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=90.8
Q ss_pred ccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecC-ChHHHHhcCccHHHHHHHHHhCCC-EEEEcccccc
Q 041136 11 KWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLD-SERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHT 86 (214)
Q Consensus 11 ~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~ 86 (214)
+++..+-.++++|=|= .|.||-.+|++ .+.. .|+.| |...|. -|++|.+...-.+. .-+..-||=+
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g----GA~~--vt~VD~S~~al~----~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGGFSVHAALG----GASE--VTSVDLSKRALE----WARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred HHHhhhccCCeEEEecccCcHHHHHHHhc----CCCc--eEEEeccHHHHH----HHHHHHHhcCCCccceeeehhhHHH
Confidence 3445555588888653 67776665543 2222 45667 444443 47777765432222 2344455544
Q ss_pred CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc----Hh
Q 041136 87 MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN----VM 162 (214)
Q Consensus 87 L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~----i~ 162 (214)
.-+...-++.+||.||.+.|-.+...... -+..+.+..|+ .-|.++|+++|.+.+..|... ...=. |.
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~---~~~~rdy~~l~----~~~~~iL~pgG~l~~~s~~~~-~~~~~f~~~i~ 351 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQE---FSAQRDYKDLN----DLALRLLAPGGTLVTSSCSRH-FSSDLFLEIIA 351 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccc---hhHHHHHHHHH----HHHHHHcCCCCEEEEEecCCc-cCHHHHHHHHH
Confidence 32221224679999999999998643211 12223444444 448899999999988877744 33322 33
Q ss_pred hHHHhcCCEEEEE-ecCCCCCCCCCc
Q 041136 163 GLADKLGLVLKEK-VEFLKQDFPGYH 187 (214)
Q Consensus 163 ~lA~~~gl~l~~~-~~F~~~~yPgY~ 187 (214)
..|...|...+.. ..-.+.++|...
T Consensus 352 ~a~~~~~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 352 RAAAAAGRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred HHHHhcCCcEEEeeccCCCCCccccc
Confidence 4555566655554 455666666554
No 98
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=95.14 E-value=0.34 Score=40.44 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=76.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||-+|-|.=+++..+++.. ..++ +.|....+.. .+.+++.. .+. .-+...|+.++... ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~--~iD~s~~~~~---~a~~~~~~---~~~~~~~~~~~d~~~~~~~---~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVT--GIDASEENIE---VAKLHAKK---DPLLKIEYRCTSVEDLAEK---GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEE--EEeCCHHHHH---HHHHHHHH---cCCCceEEEeCCHHHhhcC---CC
Confidence 37799999976655666676643 2344 4554333321 23333332 232 22233455544321 14
Q ss_pred CcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC------------------
Q 041136 96 MKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------ 155 (214)
Q Consensus 96 ~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------ 155 (214)
.+||.|+.++. |+. -...+++++..+|+++|.+.++.....+
T Consensus 111 ~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVP------------------DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP 172 (224)
T ss_pred CCccEEEehhHHHhCC------------------CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC
Confidence 68999998642 221 1246788899999999999887532210
Q ss_pred --------C-CcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 156 --------Y-NQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 156 --------y-~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
+ +.=++.++++.+|+.+.+...+. |+.+.
T Consensus 173 ~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~~---~~~~~ 210 (224)
T TIGR01983 173 KGTHDWEKFIKPSELTSWLESAGLRVKDVKGLV---YNPIK 210 (224)
T ss_pred CCcCChhhcCCHHHHHHHHHHcCCeeeeeeeEE---eehhh
Confidence 1 11136678888898887754332 44444
No 99
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.12 Score=49.10 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=79.2
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|..|=|+||.. ||+.. ..++++-...+.. . .|+.|++.+.-.+ .-+.--||.++-.. ......+|.||
T Consensus 300 lYCGvG~f~l~--lA~~~---~~V~gvEi~~~aV-~----~A~~NA~~n~i~N-~~f~~~~ae~~~~~-~~~~~~~d~Vv 367 (432)
T COG2265 300 LYCGVGTFGLP--LAKRV---KKVHGVEISPEAV-E----AAQENAAANGIDN-VEFIAGDAEEFTPA-WWEGYKPDVVV 367 (432)
T ss_pred eccCCChhhhh--hcccC---CEEEEEecCHHHH-H----HHHHHHHHcCCCc-EEEEeCCHHHHhhh-ccccCCCCEEE
Confidence 78899999888 55543 4677776654332 2 5888998887666 34444566665542 12456899999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEecCCCCC
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQD 182 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~ 182 (214)
.+.|-.|.. ++++. ...+ +.+..-|+|+ | .|-+.=.=...-...|+.+.+.-+|| +
T Consensus 368 vDPPR~G~~--------------~~~lk----~l~~-~~p~~IvYVS-C--NP~TlaRDl~~L~~~gy~i~~v~~~D--m 423 (432)
T COG2265 368 VDPPRAGAD--------------REVLK----QLAK-LKPKRIVYVS-C--NPATLARDLAILASTGYEIERVQPFD--M 423 (432)
T ss_pred ECCCCCCCC--------------HHHHH----HHHh-cCCCcEEEEe-C--CHHHHHHHHHHHHhCCeEEEEEEEec--c
Confidence 999999973 11211 1111 2455556776 2 23221111122234578899999999 8
Q ss_pred CCCCcc
Q 041136 183 FPGYHN 188 (214)
Q Consensus 183 yPgY~~ 188 (214)
||.=+|
T Consensus 424 FP~T~H 429 (432)
T COG2265 424 FPHTHH 429 (432)
T ss_pred CCCccc
Confidence 887666
No 100
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.05 E-value=0.26 Score=42.53 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++... .. ..|+.|..+.+.+ .+ ++.++.++ ..|+..+. .
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~--~v~gvD~s~~~~~---~a-------~~~~~~~~-~~d~~~~~-----~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP-GA--VIEALDSSPEMVA---AA-------RERGVDAR-TGDVRDWK-----P 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC-CC--EEEEEECCHHHHH---HH-------HhcCCcEE-EcChhhCC-----C
Confidence 456778999998433344555887763 23 3577776554432 12 22355543 35776552 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...||.|+.|+...=.. + ...+++.+..+|+|||.+.++.
T Consensus 87 ~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 87 KPDTDVVVSNAALQWVP----E------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCceEEEEehhhhhCC----C------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 35799999999743211 0 1345667789999999998874
No 101
>PHA03412 putative methyltransferase; Provisional
Probab=95.05 E-value=0.18 Score=44.31 Aligned_cols=106 Identities=10% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCeEEEEecCchhHHHHHHHHhC--CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG--SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||-+|=|.=.++.++++... ...+|+|.-+|....- .+..|+. ++. ++.-|+.... + ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-----~Ar~n~~-----~~~-~~~~D~~~~~----~-~~ 113 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-----LGKRIVP-----EAT-WINADALTTE----F-DT 113 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-----HHHhhcc-----CCE-EEEcchhccc----c-cC
Confidence 57999999777788888888643 2235555555543221 2444432 233 4445665322 2 35
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG 144 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G 144 (214)
+||.||-|.|..-...... ..+ ...-.+...|++.|.+|+++|+
T Consensus 114 ~FDlIIsNPPY~~~~~~d~-~ar---~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDF-KGK---YTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred CccEEEECCCCCCcccccc-CCc---ccccHHHHHHHHHHHHHcCCCE
Confidence 7999999999984321110 000 1123466778999998666554
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.96 E-value=0.3 Score=45.93 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=77.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.+.+||-||=|.=..+..|++.++ .. +|++|..++..+ .|..|...+. ....+...|+..+. +..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvDiS~~~l~---~A~~~~~~~~--~~v~~~~~d~~~~~----~~~ 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--VH--VVGIDLSVNMIS---FALERAIGRK--CSVEFEVADCTKKT----YPD 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--CE--EEEEECCHHHHH---HHHHHhhcCC--CceEEEEcCcccCC----CCC
Confidence 46788999999666566677888763 34 455664333331 3444543221 11223345666542 344
Q ss_pred CcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCCC--------------
Q 041136 96 MKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHPY-------------- 156 (214)
Q Consensus 96 ~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~Py-------------- 156 (214)
.+||.|+.. +-|+.. ...+++.+..+|+|||.+.|+-. .+.|.
T Consensus 331 ~~fD~I~s~~~l~h~~d------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (475)
T PLN02336 331 NSFDVIYSRDTILHIQD------------------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDL 392 (475)
T ss_pred CCEEEEEECCcccccCC------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCC
Confidence 689999986 445431 12567888999999999987632 11221
Q ss_pred -CcccHhhHHHhcCCEEEEEec
Q 041136 157 -NQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~~~~ 177 (214)
..=.+..+.+++||.......
T Consensus 393 ~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 393 HDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCHHHHHHHHHHCCCeeeeeec
Confidence 111245677778888775443
No 103
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.79 E-value=0.68 Score=43.96 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=88.6
Q ss_pred chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCC
Q 041136 29 DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA 108 (214)
Q Consensus 29 nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~ 108 (214)
-=|+-+||.+.-| .|+|- |....-.+ .-..|+..|- ..-+|.-+-|...+... .+-+ +||||.-+=|+.
T Consensus 255 KTt~IAalMkn~G---~I~An--D~n~~r~~---~l~~n~~rlG-v~ntiv~n~D~~ef~~~-~~~~-~fDRVLLDAPCS 323 (460)
T KOG1122|consen 255 KTTHIAALMKNTG---VIFAN--DSNENRLK---SLKANLHRLG-VTNTIVSNYDGREFPEK-EFPG-SFDRVLLDAPCS 323 (460)
T ss_pred hHHHHHHHHcCCc---eEEec--ccchHHHH---HHHHHHHHhC-CCceEEEccCccccccc-ccCc-ccceeeecCCCC
Confidence 3356666655443 45553 43221110 1234444443 12356667777755432 2434 899999999999
Q ss_pred CCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCcccHhhHHHhc-CCEEEEEecCC
Q 041136 109 GHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQWNVMGLADKL-GLVLKEKVEFL 179 (214)
Q Consensus 109 G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~W~i~~lA~~~-gl~l~~~~~F~ 179 (214)
|.+-+.+++. ...+.....|=+..|.||.+++++||.+..+-|.-.| -+.|.|..+.++. .+.|....++-
T Consensus 324 Gtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 324 GTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDI 402 (460)
T ss_pred CCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccC
Confidence 9654444432 2345667778888899999999999999888887555 5789888866665 78877765543
No 104
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=94.74 E-value=0.28 Score=42.07 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=63.2
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+..+..+||-||-|.=.++..|++.++ +.++ ++.|..+++.+ .+.+++ .++. +...|+..+.
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v--~gvD~s~~~i~---~a~~~~-----~~~~-~~~~d~~~~~----- 89 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWP-AARI--TGIDSSPAMLA---EARSRL-----PDCQ-FVEADIASWQ----- 89 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHhC-----CCCe-EEECchhccC-----
Confidence 3557789999999555455666887763 3344 55565444432 233222 1233 3445666542
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.|+.|+...-.. + ...+++.+..+|++||.+.++.
T Consensus 90 ~~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 PPQALDLIFANASLQWLP----D------------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCCccEEEEccChhhCC----C------------HHHHHHHHHHhcCCCcEEEEEC
Confidence 234799999997643221 1 1246777888999999998875
No 105
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.72 E-value=0.24 Score=47.52 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred CCeEEE--EecCchhHHHHHHHHhC-----CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 19 NQRILL--VGEGDFSFSDCLARAFG-----SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 19 ~~~ILl--VGeGnFSFS~sLa~~~~-----~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
..+||= +|.|.|.-+ +++... ....+-.++.|..+++. +.+..|+..+...+..|..+---.......
T Consensus 32 ~~~ilDP~cGsG~fl~~--~~~~~~~~~~~~~~~~~i~g~DId~~a~---~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAA--LLKKNEEINYFKEVELNIYFADIDKTLL---KRAKKLLGEFALLEINVINFNSLSYVLLNI 106 (524)
T ss_pred ceEEEeCCCCccHHHHH--HHHHHHhcCCcccceeeeeeechhHHHH---HHHHHHHhhcCCCCceeeeccccccccccc
Confidence 346654 568888666 444331 12346667778666655 246667766653344433221011100000
Q ss_pred CCCCCcccEEEEcCCCCCCC
Q 041136 92 TLSQMKFDVIIFNFPHAGHS 111 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~ 111 (214)
.-....||.||-|.|-...+
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01125799999999999864
No 106
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=94.60 E-value=0.24 Score=41.16 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=60.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||-|.=+++..|++... ... .++.|...+..+ .+..++. .++. +...|++.+. +...+|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~--~~~~D~~~~~~~---~~~~~~~----~~~~-~~~~d~~~~~----~~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAE--FIALDISAGMLA---QAKTKLS----ENVQ-FICGDAEKLP----LEDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCc--EEEEeChHHHHH---HHHHhcC----CCCe-EEecchhhCC----CCCCce
Confidence 47899999665556666888753 233 455564443331 1222111 1233 3345666543 345679
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
|.||.++...-.. -...++..+..+|+++|.+.++.
T Consensus 100 D~vi~~~~l~~~~----------------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 100 DLIVSNLALQWCD----------------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eEEEEhhhhhhcc----------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999987543211 12357888999999999998763
No 107
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.59 E-value=0.12 Score=45.10 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=71.1
Q ss_pred CeEEEEecC---chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVGEG---DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeG---nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
-.+|.||=| ||-|- .-......|++|+.+-+. +| +..-+.+-+-..+.-+.--|+.+|.+ +...
T Consensus 78 ~~vLEvgcGtG~Nfkfy-------~~~p~~svt~lDpn~~me-e~--~~ks~~E~k~~~~~~fvva~ge~l~~---l~d~ 144 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFY-------PWKPINSVTCLDPNEKME-EI--ADKSAAEKKPLQVERFVVADGENLPQ---LADG 144 (252)
T ss_pred cceEEecccCCCCcccc-------cCCCCceEEEeCCcHHHH-HH--HHHHHhhccCcceEEEEeechhcCcc---cccC
Confidence 347999954 77764 212467889999876554 23 22222222333444344446666654 7889
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCCcccHh
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYNQWNVM 162 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~~W~i~ 162 (214)
++|.||--|=-+.... + .+- +...+.+|+|||.| ++-+..|+ |..||-.
T Consensus 145 s~DtVV~TlvLCSve~----~--------~k~----L~e~~rlLRpgG~iifiEHva~~-y~~~n~i 194 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVED----P--------VKQ----LNEVRRLLRPGGRIIFIEHVAGE-YGFWNRI 194 (252)
T ss_pred CeeeEEEEEEEeccCC----H--------HHH----HHHHHHhcCCCcEEEEEeccccc-chHHHHH
Confidence 9999998887766531 1 112 23457899999997 77777766 9998833
No 108
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=94.56 E-value=0.11 Score=45.05 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.-.++.+||=|| .|++++. |++..++ +-..++.|-.+++.+ .+.+.+....... .-+..-||++|.
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~--l~~~~~~--~~~v~~vD~s~~ML~---~a~~k~~~~~~~~-i~~v~~da~~lp---- 111 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRE--LARRVGP--NGKVVGVDISPGMLE---VARKKLKREGLQN-IEFVQGDAEDLP---- 111 (233)
T ss_dssp T--S--EEEEET-TTSHHHHH--HGGGSS-----EEEEEES-HHHHH---HHHHHHHHTT--S-EEEEE-BTTB------
T ss_pred CCCCCCEEEEeCCChHHHHHH--HHHHCCC--ccEEEEecCCHHHHH---HHHHHHHhhCCCC-eeEEEcCHHHhc----
Confidence 456678998877 7777666 7887754 346677885555442 3554444432222 334556898885
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|..-| |.. | -.-....++.+..+|+|||.+.|.
T Consensus 112 ~~d~sfD~v~~~f---glr------n-------~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 112 FPDNSFDAVTCSF---GLR------N-------FPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp S-TT-EEEEEEES----GG------G--------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceeEEEHHh---hHH------h-------hCCHHHHHHHHHHHcCCCeEEEEe
Confidence 5678999999766 221 1 001233567788999999998654
No 109
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.56 E-value=1.4 Score=38.05 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|-|.=-.+.++++ .+. ..++| .|..+... ..+.+|++.. |+... ++ +.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g~-~~v~g--iDis~~~l---~~A~~n~~~~---~~~~~--~~---~~~----~~~ 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LGA-KKVLA--VDIDPQAV---EAARENAELN---GVELN--VY---LPQ----GDL 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cCC-CeEEE--EECCHHHH---HHHHHHHHHc---CCCce--EE---Ecc----CCC
Confidence 4678999999776333333333 442 34554 45444333 1466666542 33111 11 111 112
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.|+.|.. ...+..++..+..+|++||.+.++-.. ..+.-.+.....+.|+.+.+.
T Consensus 179 ~fD~Vvani~-------------------~~~~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 179 KADVIVANIL-------------------ANPLLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred CcCEEEEcCc-------------------HHHHHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEE
Confidence 7999998842 113456777888999999999887111 123445677788899988763
No 110
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.48 E-value=0.014 Score=52.50 Aligned_cols=153 Identities=23% Similarity=0.290 Sum_probs=75.2
Q ss_pred cccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEcccccc
Q 041136 10 VKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHT 86 (214)
Q Consensus 10 ~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~ 86 (214)
++|+..+..+++||=+= .|.||-+ -..+.+. -+|+.|..+...+ -+++|++.+.-. ...-+..-||-+
T Consensus 115 R~~v~~~~~gkrvLnlFsYTGgfsv~----Aa~gGA~--~v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 115 RKWVRKYAKGKRVLNLFSYTGGFSVA----AAAGGAK--EVVSVDSSKRALE---WAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp HHHHHHHCTTCEEEEET-TTTHHHHH----HHHTTES--EEEEEES-HHHHH---HHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred HHHHHHHcCCCceEEecCCCCHHHHH----HHHCCCC--EEEEEeCCHHHHH---HHHHHHHHcCCCccceEEEecCHHH
Confidence 35677788899998663 4544443 2333332 3567886554442 477887766422 223344556654
Q ss_pred -CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 87 -MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 87 -L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
|.+. -+..+||.||.+.|=...+. . + ..+...+| +..|.++|+++|.+..+.|... .+.=.+.++.
T Consensus 186 ~l~~~--~~~~~fD~IIlDPPsF~k~~--~--~--~~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~~~~ 252 (286)
T PF10672_consen 186 FLKRL--KKGGRFDLIILDPPSFAKSK--F--D--LERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLLEAV 252 (286)
T ss_dssp HHHHH--HHTT-EEEEEE--SSEESST--C--E--HHHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHHHHH
T ss_pred HHHHH--hcCCCCCEEEECCCCCCCCH--H--H--HHHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHHHHH
Confidence 2210 12468999999999875321 1 1 11233444 4668899999999987777644 2322233333
Q ss_pred Hhc--CCEEEEEecCCCCCCCC
Q 041136 166 DKL--GLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 166 ~~~--gl~l~~~~~F~~~~yPg 185 (214)
+++ .+.+.++. -+|.+||.
T Consensus 253 ~~~a~~~~~~~~~-~~p~df~~ 273 (286)
T PF10672_consen 253 AEAAREVEFIERL-GQPPDFPD 273 (286)
T ss_dssp HHHHHHCEEEEEE-E-------
T ss_pred HHhCccceEeeee-cccccccc
Confidence 332 34444322 25666775
No 111
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.46 E-value=0.5 Score=43.62 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=75.3
Q ss_pred CCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||=+| -|.||.. ||.. +..+ ++.|...... ..+.+|++.+.-.+ .-+..-|+.+.... . ..
T Consensus 234 ~~~vLDL~cG~G~~~l~--la~~---~~~v--~~vE~~~~av---~~a~~N~~~~~~~~-~~~~~~d~~~~~~~--~-~~ 299 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLH--CAGP---DTQL--TGIEIESEAI---ACAQQSAQMLGLDN-LSFAALDSAKFATA--Q-MS 299 (374)
T ss_pred CCEEEEccCCccHHHHH--Hhhc---CCeE--EEEECCHHHH---HHHHHHHHHcCCCc-EEEEECCHHHHHHh--c-CC
Confidence 46787665 6655544 5532 2344 4555433333 15777877664323 33566677654321 1 23
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~~gl~l~~~ 175 (214)
.||.||.|.|-.|.. .+++..... +++++-|+|.. .|. ---|+..| .||.+...
T Consensus 300 ~~D~vi~DPPr~G~~--------------~~~l~~l~~-----~~p~~ivyvsc---~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 300 APELVLVNPPRRGIG--------------KELCDYLSQ-----MAPKFILYSSC---NAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred CCCEEEECCCCCCCc--------------HHHHHHHHh-----cCCCeEEEEEe---CHHHHHHHHHHh---cCceEEEE
Confidence 599999999987642 122221111 57777777773 231 12344445 69999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.+|| +||.=.|-
T Consensus 355 ~~~D--mFPqT~Hv 366 (374)
T TIGR02085 355 QLFD--MFPHTSHY 366 (374)
T ss_pred EEec--cCCCCCcE
Confidence 9999 99976664
No 112
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=94.42 E-value=0.25 Score=45.41 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=74.1
Q ss_pred CeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----CCC
Q 041136 20 QRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----PTL 93 (214)
Q Consensus 20 ~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~~~ 93 (214)
.++|-+ |-|.||+ +|++... .+ ++.|...+.. ..+.+|++.+.-.++. ++.-||.+.-+. ..+
T Consensus 208 ~~vLDl~~G~G~~sl--~la~~~~---~v--~~vE~~~~ai---~~a~~N~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 208 GDLLELYCGNGNFTL--ALARNFR---RV--LATEISKPSV---AAAQYNIAANGIDNVQ-IIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CeEEEEeccccHHHH--HHHhhCC---EE--EEEECCHHHH---HHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcccc
Confidence 467555 5777777 4777642 45 4555444433 2577787666432333 455677652110 000
Q ss_pred --------CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhH
Q 041136 94 --------SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGL 164 (214)
Q Consensus 94 --------~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~l 164 (214)
...+||.||.+.|-.|.. .++|.... ++++-|+|+ |+ |.+ --++..|
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~G~~--------------~~~l~~l~-------~~~~ivyvS-C~--p~tlarDl~~L 332 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRAGLD--------------DETLKLVQ-------AYERILYIS-CN--PETLCENLETL 332 (362)
T ss_pred cccccccccCCCCCEEEECCCCCCCc--------------HHHHHHHH-------ccCCEEEEE-eC--HHHHHHHHHHH
Confidence 123699999999986642 22222221 235556666 32 311 2334445
Q ss_pred HHhcCCEEEEEecCCCCCCCCCccc
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGYHNK 189 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY~~~ 189 (214)
.+ ||.+.+..+|| +||.=.|-
T Consensus 333 ~~--gY~l~~v~~~D--mFPqT~Hv 353 (362)
T PRK05031 333 SQ--THKVERFALFD--QFPYTHHM 353 (362)
T ss_pred cC--CcEEEEEEEcc--cCCCCCcE
Confidence 42 99999999999 99987764
No 113
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.36 E-value=0.68 Score=39.18 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++++||-||-|.=.++..|++..+. +-..|++|..+++.+ .+.+|++.+.-.++. +..-|+.... ...
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~--~~~V~~vE~~~~~~~---~a~~~l~~~g~~~v~-~~~gd~~~~~----~~~ 143 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGK--SGKVVTIERIPELAE---KAKKTLKKLGYDNVE-VIVGDGTLGY----EEN 143 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCC--CCEEEEEeCCHHHHH---HHHHHHHHcCCCCeE-EEECCcccCC----CcC
Confidence 467899999998877777778887753 335567776666653 466777655322333 3444554321 234
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..||+|+.+.- . . ++... ..+.|++||.+.+.+.+
T Consensus 144 ~~fD~I~~~~~---~-~--------------~~~~~----l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 144 APYDRIYVTAA---G-P--------------DIPKP----LIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CCcCEEEECCC---c-c--------------cchHH----HHHhhCCCcEEEEEEcC
Confidence 67999997531 1 0 01111 23469999999887643
No 114
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.66 Score=41.18 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+.+++||..|-|.=+.|.+||+..++...| ++||-.++-. ..|.+|+.+.--.+...+..-|+++-. ..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~---k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-----~~ 161 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFA---KTARENLSEFGLGDRVTLKLGDVREGI-----DE 161 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHH---HHHHHHHHHhccccceEEEeccccccc-----cc
Confidence 5788999999999999999999998865554 5777776655 369999998733333344445666543 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..||.|+-+-|-.= +.+..++.+|++||.+.+-
T Consensus 162 ~~vDav~LDmp~PW---------------------~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 162 EDVDAVFLDLPDPW---------------------NVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccCEEEEcCCChH---------------------HHHHHHHHHhCCCcEEEEE
Confidence 48999999998642 2345688999999998777
No 115
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.16 E-value=0.77 Score=39.28 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=78.4
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.=+|.+|-|.=--|..|++..++..-.+||-+..++ ++.+++..+..++. +++=.|+|-. .+..++-|
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A--------~~~Tl~TA~~n~~~--~~~V~tdl~~--~l~~~~VD 112 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA--------LEATLETARCNRVH--IDVVRTDLLS--GLRNESVD 112 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH--------HHHHHHHHHhcCCc--cceeehhHHh--hhccCCcc
Confidence 346788866555556688887754444555443322 23356666655554 3444455543 36668999
Q ss_pred EEEEcCCCCCCCC-CCCcccHHHH----HHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCC
Q 041136 100 VIIFNFPHAGHSP-PLSEQDTNLI----KRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHP 155 (214)
Q Consensus 100 ~IiFNFPH~G~~~-~~~~~~~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~P 155 (214)
.+|||.|-+-... .+.+++.+.- +.-|+.+..|+.-..++|+|.|.+ .|++....|
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 9999999996532 2222332211 234788999999999999999998 666766666
No 116
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.89 E-value=0.36 Score=37.50 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=75.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++. + . ..++.|..+.+.++ ..-....+ ++... ....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~--~~~g~D~~~~~~~~------------~~~~~~~~--~~~~~----~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--F--EVTGVDISPQMIEK------------RNVVFDNF--DAQDP----PFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--S--EEEEEESSHHHHHH------------TTSEEEEE--ECHTH----HCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--C--EEEEEECCHHHHhh------------hhhhhhhh--hhhhh----hccc
Confidence 678899999997766788888554 2 2 45567765554432 11112222 12211 1345
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--------------------- 154 (214)
..||.|+.+ ++=.. +. =...+++....+|+|+|.+.++.-...
T Consensus 77 ~~fD~i~~~--~~l~~----------~~----d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T PF13489_consen 77 GSFDLIICN--DVLEH----------LP----DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVH 140 (161)
T ss_dssp SSEEEEEEE--SSGGG----------SS----HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTE
T ss_pred cchhhHhhH--HHHhh----------cc----cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceec
Confidence 789999998 32110 11 156788889999999999977754321
Q ss_pred CCCcccHhhHHHhcCCEEEE
Q 041136 155 PYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~ 174 (214)
.++.+.+..+++++|+.+.+
T Consensus 141 ~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 141 FFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EBBHHHHHHHHHHTTEEEEE
T ss_pred cCCHHHHHHHHHHCCCEEEE
Confidence 14556688888888988764
No 117
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.87 E-value=0.98 Score=37.75 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-..+.+||.||-|.=.++..|++..+ . .++.|..+++.+ .+.+|++.+.-.++.+..+ |+.+. . ..
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~---~--v~~vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~--~~ 141 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVR---R--VFSVERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--W--PA 141 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhC---E--EEEEeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--C--Cc
Confidence 346788999999665444555666542 3 455665555542 4666766653333444433 44321 1 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+||+|+.+.+... + .+ ....+|++||.+.+...
T Consensus 142 ~~~fD~I~~~~~~~~------------~--~~--------~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPE------------I--PR--------ALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchh------------h--hH--------HHHHhcCCCcEEEEEEc
Confidence 367999999864311 1 11 23468999999988765
No 118
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=93.85 E-value=0.43 Score=40.31 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=78.4
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh--HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE--RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~--~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
.+-+.++.-||.+|=|+==|.+++.++-..+.+|+|..++.+ ..|.++||+.. +++-||-.|..+
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------------ii~gda~~l~~~ 109 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------------IINGDAFDLRTT 109 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------------ccccchhhHHHH
Confidence 455788899999998888889999887656678888887764 56677776432 567788777743
Q ss_pred -CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 91 -PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 91 -~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
...+.+.||.||.--|-..... +..-++| +++.+.|..||.+ .+|
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~----------~~~iail----e~~~~rl~~gg~lvqft 156 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPM----------HRRIAIL----ESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcH----------HHHHHHH----HHHHHhcCCCCeEEEEE
Confidence 3457789999999999887642 2233444 4456778887765 444
No 119
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.83 E-value=0.65 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++.. ..+ ++.|-.++..+. +.+.........+...|+.+... .+.
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~---~~v--~giD~s~~~l~~------a~~~~~~~~~i~~~~~d~~~~~~--~~~ 100 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKA---GQV--IALDFIESVIKK------NESINGHYKNVKFMCADVTSPDL--NIS 100 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhC---CEE--EEEeCCHHHHHH------HHHHhccCCceEEEEeccccccc--CCC
Confidence 44467799999966656666688764 244 566754444421 11111112233345557754321 245
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+++..=. ....+..+++.+..+|+++|.+.+.
T Consensus 101 ~~~fD~I~~~~~l~~l--------------~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 101 DGSVDLIFSNWLLMYL--------------SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCEEEEehhhhHHhC--------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5789999999874321 2334678888899999999998665
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.73 E-value=0.47 Score=40.98 Aligned_cols=111 Identities=10% Similarity=0.007 Sum_probs=65.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--CC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--PT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~~ 92 (214)
-....++||.+|-|-=.=+++|++..+... ..|++|..++.. .-|.+|++...-.+..-++.-||.+.-.. +.
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g--~v~tiD~d~~~~---~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDG--RITAIDIDKEAY---EVGLEFIKKAGVDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCC--EEEEEECCHHHH---HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence 356788999999654333455777665433 455666555443 24777887664323233444477653110 00
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....+||.|..+-+. .-...+|.-+..+|++||.|.+.
T Consensus 140 ~~~~~fD~VfiDa~k-------------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 140 DPKPEFDFAFVDADK-------------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCCEEEECCCH-------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 113579999886432 12224677788999999987764
No 121
>PLN02823 spermine synthase
Probab=93.55 E-value=0.37 Score=44.22 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=66.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+.++||++|=|+-+-++-+.++.+ ...|++.-+|.+- ++.++|-.. +-..+..-.++|+.+ ||.+.-+ -..+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~---~~~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELE---KRDE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHh---hCCC
Confidence 567999999999888887777543 3467777676542 333333111 111233344555544 5554211 1246
Q ss_pred cccEEEEcCCCC--CCCCCCCcccHHHHHHhHHHHHHHHH-HHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHA--GHSPPLSEQDTNLIKRHKNLLEAFLK-NGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~--G~~~~~~~~~~~~i~~n~~LL~~Ff~-Sa~~lL~~~G~i~V 148 (214)
+||.||.+.|.. ++. ...-.=..||+ .++..|+++|-+.+
T Consensus 176 ~yDvIi~D~~dp~~~~~------------~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 176 KFDVIIGDLADPVEGGP------------CYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CccEEEecCCCccccCc------------chhhccHHHHHHHHHHhcCCCcEEEE
Confidence 799999997642 211 01223457888 89999999997644
No 122
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.54 E-value=0.17 Score=46.38 Aligned_cols=128 Identities=19% Similarity=0.291 Sum_probs=67.6
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC----C--------
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR----H-------- 90 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~----~-------- 90 (214)
|..|=|+||.+ ||+... .|+|. |..++..+ +|..|.+...-.++.... .||.++.. .
T Consensus 203 lycG~G~fsl~--la~~~~---~V~gv--E~~~~av~---~A~~Na~~N~i~n~~f~~-~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 203 LYCGVGTFSLP--LAKKAK---KVIGV--EIVEEAVE---DARENAKLNGIDNVEFIR-GDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp ES-TTTCCHHH--HHCCSS---EEEEE--ES-HHHHH---HHHHHHHHTT--SEEEEE---SHHCCCHHCCS-GGTTGGG
T ss_pred EeecCCHHHHH--HHhhCC---eEEEe--eCCHHHHH---HHHHHHHHcCCCcceEEE-eeccchhHHHHhhHHHHhhhh
Confidence 56799999888 777653 56555 55554442 688888877655655543 34443321 0
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCC-cccHhhHHHhc
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYN-QWNVMGLADKL 168 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~-~W~i~~lA~~~ 168 (214)
..+....+|.||.+.|-.|... .. .+++. ++ .+| +|+ |+ |-+ .-++..|. .
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~~-------~~----~~~~~-------~~----~~ivYvS-Cn--P~tlaRDl~~L~--~ 324 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLDE-------KV----IELIK-------KL----KRIVYVS-CN--PATLARDLKILK--E 324 (352)
T ss_dssp S-GGCTTESEEEE---TT-SCH-------HH----HHHHH-------HS----SEEEEEE-S---HHHHHHHHHHHH--C
T ss_pred hhhhhcCCCEEEEcCCCCCchH-------HH----HHHHh-------cC----CeEEEEE-CC--HHHHHHHHHHHh--h
Confidence 0123347899999999999731 11 11221 22 255 555 43 322 34455553 3
Q ss_pred CCEEEEEecCCCCCCCCCcccc
Q 041136 169 GLVLKEKVEFLKQDFPGYHNKR 190 (214)
Q Consensus 169 gl~l~~~~~F~~~~yPgY~~~r 190 (214)
||.+....+|| +||.=.|-.
T Consensus 325 ~y~~~~v~~~D--mFP~T~HvE 344 (352)
T PF05958_consen 325 GYKLEKVQPVD--MFPQTHHVE 344 (352)
T ss_dssp CEEEEEEEEE---SSTTSS--E
T ss_pred cCEEEEEEEee--cCCCCCcEE
Confidence 89999999999 999877643
No 123
>PRK00536 speE spermidine synthase; Provisional
Probab=93.44 E-value=0.56 Score=41.67 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcC-ccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKH-WTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY-~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+.+|||++|-||=-=++-+.|+- .+|+---+|.+- ++.++| |... +.+..-.++++..+ .+ -.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~-----~~---~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQL-----LD---LD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehh-----hh---cc
Confidence 567999999988876666666652 367777777642 455554 4322 24655566776532 11 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.++||.||-+=. . . ..|++.+++.|+++|-+.+
T Consensus 137 ~~~fDVIIvDs~----~-------------~----~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 IKKYDLIICLQE----P-------------D----IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCcCCEEEEcCC----C-------------C----hHHHHHHHHhcCCCcEEEE
Confidence 367999999821 0 0 4788999999999996644
No 124
>PRK11524 putative methyltransferase; Provisional
Probab=93.38 E-value=0.36 Score=42.73 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=55.0
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc--cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ--DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~--~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
-++.-||.++-+ .+..++||.||.|.|.-... ..... +.. .......+..+|..+..+|+++|.|.|- ++..
T Consensus 10 ~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~~- 83 (284)
T PRK11524 10 TIIHGDALTELK--KIPSESVDLIFADPPYNIGK-NFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIM-NSTE- 83 (284)
T ss_pred EEEeccHHHHHH--hcccCcccEEEECCCccccc-cccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCch-
Confidence 355567777432 25567899999999985311 11111 101 1235677899999999999999999875 2211
Q ss_pred CCcccHhhHHHhcCCEEEEEe
Q 041136 156 YNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~ 176 (214)
.- ....++.+.|+.+....
T Consensus 84 ~~--~~~~~~~~~~f~~~~~i 102 (284)
T PRK11524 84 NM--PFIDLYCRKLFTIKSRI 102 (284)
T ss_pred hh--hHHHHHHhcCcceEEEE
Confidence 11 11234456677665544
No 125
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.35 E-value=0.98 Score=41.05 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHH-HHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS-LWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+++||-||=|+=-++..++.. + + . .++++|........ ++ .++. +...+...+...|+.++.. .
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g-~-~-~v~GiDpS~~ml~q---~~-~~~~~~~~~~~v~~~~~~ie~lp~-----~ 186 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-G-A-K-SLVGIDPTVLFLCQ---FE-AVRKLLDNDKRAILEPLGIEQLHE-----L 186 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-C-C-C-EEEEEcCCHHHHHH---HH-HHHHHhccCCCeEEEECCHHHCCC-----C
Confidence 34689999996665555556654 2 1 2 45888965554422 11 1222 2222233344456666542 1
Q ss_pred CcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cCCC------C---C----Cc
Q 041136 96 MKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RDDH------P---Y----NQ 158 (214)
Q Consensus 96 ~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~~~------P---y----~~ 158 (214)
..||.|+.+. -|.. =...+++.+..+|++||++.++- .++. | | +.
T Consensus 187 ~~FD~V~s~gvL~H~~------------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv 248 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRK------------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV 248 (314)
T ss_pred CCcCEEEEcchhhccC------------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc
Confidence 3699999873 3432 23457888999999999997752 2221 2 1 22
Q ss_pred cc------HhhHHHhcCCEEEEEec
Q 041136 159 WN------VMGLADKLGLVLKEKVE 177 (214)
Q Consensus 159 W~------i~~lA~~~gl~l~~~~~ 177 (214)
|. +....+++||...+...
T Consensus 249 ~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 249 YFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 32 34667889999887653
No 126
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=93.33 E-value=0.61 Score=42.77 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=75.1
Q ss_pred CeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC----CC
Q 041136 20 QRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP----TL 93 (214)
Q Consensus 20 ~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~----~~ 93 (214)
.+||-+| -|.||+ +|++... -.++.|...+..+ .+.+|++.+.-.++. ++.-|+.++-... .+
T Consensus 199 ~~vlDl~~G~G~~sl--~la~~~~-----~v~~vE~~~~av~---~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 199 GDLLELYCGNGNFSL--ALAQNFR-----RVLATEIAKPSVN---AAQYNIAANNIDNVQ-IIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred CcEEEEeccccHHHH--HHHHhCC-----EEEEEECCHHHHH---HHHHHHHHcCCCcEE-EEEcCHHHHHHHHhhcccc
Confidence 3686665 666666 5777652 3556665554442 577787766433433 4555666532110 01
Q ss_pred ---C-----CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhH
Q 041136 94 ---S-----QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGL 164 (214)
Q Consensus 94 ---~-----~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~l 164 (214)
. ...||.|+.+.|-.|.. .++|.. ++++++-|+|+ | .|.. --++..|
T Consensus 268 ~~~~~~~~~~~~~d~v~lDPPR~G~~--------------~~~l~~-------l~~~~~ivYvs-C--~p~tlaRDl~~L 323 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVDPPRAGLD--------------PDTCKL-------VQAYERILYIS-C--NPETLKANLEQL 323 (353)
T ss_pred ccccccccccCCCCEEEECCCCCCCc--------------HHHHHH-------HHcCCcEEEEE-c--CHHHHHHHHHHH
Confidence 1 23489999999987752 222222 12245666776 2 2311 2334444
Q ss_pred HHhcCCEEEEEecCCCCCCCCCcccc
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGYHNKR 190 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY~~~r 190 (214)
. .+|.+....+|| +||.=.|-.
T Consensus 324 ~--~~Y~l~~v~~~D--mFP~T~HvE 345 (353)
T TIGR02143 324 S--ETHRVERFALFD--QFPYTHHME 345 (353)
T ss_pred h--cCcEEEEEEEcc--cCCCCCcEE
Confidence 3 349999999999 999877643
No 127
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.27 E-value=0.75 Score=40.63 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||-|.=.++..|++. + .. .|+.|..++..+ .++++++... .++.+. ..|+... .+ .+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g--~~--V~avD~s~~ai~---~~~~~~~~~~-l~v~~~-~~D~~~~----~~-~~ 183 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G--FD--VTAVDINQQSLE---NLQEIAEKEN-LNIRTG-LYDINSA----SI-QE 183 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C--CE--EEEEECCHHHHH---HHHHHHHHcC-CceEEE-Eechhcc----cc-cC
Confidence 34569999995443444456663 2 34 456675544432 2444444322 133322 2244332 12 56
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
+||.|+.++...- .+.+.+..+++.+..+|++||.+.+
T Consensus 184 ~fD~I~~~~vl~~--------------l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMF--------------LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhh--------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7999998865321 1344667888999999999999654
No 128
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=93.24 E-value=1.2 Score=37.30 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=66.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.+..+||-||=|.=.++..|++. +.. .|+.|..+++.. .+.+++......+...+...|+..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~--v~gvD~s~~~i~---~a~~~~~~~~~~~~i~~~~~d~~~~~------- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAI--VKAVDISEQMVQ---MARNRAQGRDVAGNVEFEVNDLLSLC------- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCE--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECChhhCC-------
Confidence 345789999984444455556653 223 456675444431 34444433221112233334555432
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--------------------- 154 (214)
.+||.|+..+.-.-.. ..-+...+..+..+++++ +.|+.....
T Consensus 118 ~~fD~ii~~~~l~~~~--------------~~~~~~~l~~i~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP--------------ASDMAKALGHLASLTKER--VIFTFAPKTAWLAFLKMIGELFPGSSRATS 181 (219)
T ss_pred CCcCEEEEhhHHHhCC--------------HHHHHHHHHHHHHHhCCC--EEEEECCCchHHHHHHHHHhhCcCcccccc
Confidence 6799999865422110 111333444555555543 434432111
Q ss_pred --CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 --PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 --Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
++....++.++..+|+.+......
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeecc
Confidence 123445777888888888776433
No 129
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=93.21 E-value=0.29 Score=45.14 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCCCCCeE--EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRI--LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~I--LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
-..++.+| +.-|=|=||+. +|++- .. .|+|.-+...+- ...++|++.++-.+....+.-||..+...
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~--~Ak~g-~~-~V~A~diNP~A~-----~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIP--IAKKG-RP-KVYAIDINPDAV-----EYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred hhcCCCEEEEccCCcccchhh--hhhcC-Cc-eEEEEecCHHHH-----HHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 45557776 46799999988 55542 22 377776665432 13778888887777666677788877542
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-CCCCccc---HhhHHHhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-HPYNQWN---VMGLADKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-~Py~~W~---i~~lA~~~ 168 (214)
...||+||.|.|+... .|...|..+++.+|.||.-...- ..-..|. |...|.+.
T Consensus 254 --~~~aDrIim~~p~~a~--------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 254 --LGVADRIIMGLPKSAH--------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred --cccCCEEEeCCCCcch--------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 2779999999999432 35566888888899997764321 1111123 44566666
Q ss_pred CC
Q 041136 169 GL 170 (214)
Q Consensus 169 gl 170 (214)
|+
T Consensus 312 ~~ 313 (341)
T COG2520 312 GY 313 (341)
T ss_pred cC
Confidence 54
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.41 Score=41.29 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=52.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+..++||.||-|-==-|+-||+..+ ..+|.|..++|.+ .|..|++.|.-.++.|.++-=.+-+. ..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~---~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~ 136 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAE---QARRNLETLGYENVTVRHGDGSKGWP-----EE 136 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHH---HHHHHHHHcCCCceEEEECCcccCCC-----CC
Confidence 56789999999995333444555443 4567787788873 68899999987778888873222111 23
Q ss_pred CcccEEEEc
Q 041136 96 MKFDVIIFN 104 (214)
Q Consensus 96 ~~FD~IiFN 104 (214)
.+||+|+..
T Consensus 137 aPyD~I~Vt 145 (209)
T COG2518 137 APYDRIIVT 145 (209)
T ss_pred CCcCEEEEe
Confidence 789999985
No 131
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.15 E-value=1.7 Score=38.53 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-||-|.=..+.++++ ++ +..++|+-.|.. .. ..+.+|++...-.........| +. .....+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~--al---~~a~~n~~~n~~~~~~~~~~~~---~~---~~~~~~ 225 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL--AV---ESARKNAELNQVSDRLQVKLIY---LE---QPIEGK 225 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH--HH---HHHHHHHHHcCCCcceEEEecc---cc---cccCCC
Confidence 568999999665334444554 33 345666655543 22 1366666543211111112222 11 122457
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.|... . -+..++..+..+|++||.+.++
T Consensus 226 fDlVvan~~~------------~-------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 226 ADVIVANILA------------E-------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ceEEEEecCH------------H-------HHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999631 1 2345777888999999999886
No 132
>PLN02672 methionine S-methyltransferase
Probab=93.06 E-value=2.2 Score=44.98 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=82.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--C--------------CCEEEEcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--R--------------GCLVLHGV 82 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~--------------g~~Vl~~V 82 (214)
+.+||-+|-|+=-.+.+|++... ...++|+ |-..+..+ -|..|++.+.- . .+. ++.-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~av--Dis~~Al~---~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~-f~~s 191 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGL--DINPRAVK---VAWINLYLNALDDDGLPVYDGEGKTLLDRVE-FYES 191 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCcccccccccccccccccccEE-EEEC
Confidence 46899999998888888998874 2355555 64343331 47778875421 0 122 2333
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHH------------------------HhHHHHHHHHHHHHh
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK------------------------RHKNLLEAFLKNGRE 138 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~------------------------~n~~LL~~Ff~Sa~~ 138 (214)
|....-. -...+||.||-|.|=+.... ...-..+ ++ .--.+++..+..|..
T Consensus 192 Dl~~~~~---~~~~~fDlIVSNPPYI~~~e-~~~l~~e-V~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~ 266 (1082)
T PLN02672 192 DLLGYCR---DNNIELDRIVGCIPQILNPN-PEAMSKL-VTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS 266 (1082)
T ss_pred chhhhcc---ccCCceEEEEECCCcCCCcc-hhhcChh-hhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH
Confidence 4432210 01236999999999875421 0000000 11 112456788889999
Q ss_pred ccCCCCEEEEEecCCCCCCcccHh-hHHHhcCCEEEE
Q 041136 139 MLGEGGEVHVTLRDDHPYNQWNVM-GLADKLGLVLKE 174 (214)
Q Consensus 139 lL~~~G~i~VTl~~~~Py~~W~i~-~lA~~~gl~l~~ 174 (214)
+|+++|.+.+-+-..| .=.+. .+.++.|+....
T Consensus 267 ~L~pgG~l~lEiG~~q---~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 267 VIKPMGIMIFNMGGRP---GQAVCERLFERRGFRITK 300 (1082)
T ss_pred hccCCCEEEEEECccH---HHHHHHHHHHHCCCCeeE
Confidence 9999999887754333 11455 477777876544
No 133
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.89 E-value=1.6 Score=39.81 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=62.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++++||.+|-|.=.++..|++..+....|+ +.|..+++.+ .+.++++.+...++.+..+ |+.+... ..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~Vv--gVDis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~----~~ 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVP----EF 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEE--EEECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhccc----cc
Confidence 45778999999887667777888765323344 5565555542 4677776654434554443 6654322 12
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+..+ |.. .+... ....|+++|.+.+.+
T Consensus 148 ~~fD~Ii~~~---g~~---------------~ip~~----~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTV---GVD---------------EVPET----WFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECC---chH---------------HhHHH----HHHhcCCCCEEEEEe
Confidence 4699999863 210 01111 234789999987754
No 134
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=92.70 E-value=0.69 Score=40.74 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=70.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||..|.|.=|+|.+|++..++... ..|||-.++-. ..|.+|++...-.+...++.-|+.+-.-...+ .
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~--v~t~E~~~~~~---~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~ 111 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGH--VYTYEFREDRA---EKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-E 111 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSE--EEEEESSHHHH---HHHHHHHHHTTCCTTEEEEES-GGCG--STT--T
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeE--EEccccCHHHH---HHHHHHHHHcCCCCCceeEecceecccccccc-c
Confidence 468899999999999999999999976544 45677666654 35888888765545666777777642110011 3
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhcc-CCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREML-GEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL-~~~G~i~VT 149 (214)
..+|.|+-+-|..-. .| .+|...| ++||.|.+-
T Consensus 112 ~~~DavfLDlp~Pw~----------~i-----------~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWE----------AI-----------PHAKRALKKPGGRICCF 145 (247)
T ss_dssp TSEEEEEEESSSGGG----------GH-----------HHHHHHE-EEEEEEEEE
T ss_pred CcccEEEEeCCCHHH----------HH-----------HHHHHHHhcCCceEEEE
Confidence 679999999998642 12 3466778 788887666
No 135
>PLN02476 O-methyltransferase
Probab=92.47 E-value=0.48 Score=42.44 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=68.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccC-CCC-
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTM-DRH- 90 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L-~~~- 90 (214)
.-....++||.+|-|-=..|+++|+..+.... .|++|..++.. .-|.+|++..--. .+.++.| ||.+. .+.
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~--V~TiE~d~e~~---~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~ 187 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGC--LVACERDSNSL---EVAKRYYELAGVSHKVNVKHG-LAAESLKSMI 187 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE--EEEEECCHHHH---HHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHH
Confidence 34667899999998777778888887754334 45556544433 2477777765322 2444444 66542 210
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.......||.|..+-+- .-...+|.-+.++|++||.|.+-
T Consensus 188 ~~~~~~~FD~VFIDa~K-------------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 188 QNGEGSSYDFAFVDADK-------------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred hcccCCCCCEEEECCCH-------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 01123689999987542 12345566678899999998765
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=92.36 E-value=0.4 Score=41.03 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++++||.||-|-==+|..|++..+.. =..++.|..++|.+ .|.+|++.+...++.+.++ |+..-. -..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~--g~Vv~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~----~~~ 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPV--GRVVSVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGW----PEE 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTT--EEEEEEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTT----GGG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCcc--ceEEEECccHHHHH---HHHHHHHHhccCceeEEEc-chhhcc----ccC
Confidence 5688999999988444566677776532 24457887777763 5889999987767888776 444321 124
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
.+||+|+.+.--..- -..| .+.|++||.+.+-+.++.
T Consensus 140 apfD~I~v~~a~~~i--------------p~~l--------~~qL~~gGrLV~pi~~~~ 176 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI--------------PEAL--------LEQLKPGGRLVAPIGQGG 176 (209)
T ss_dssp -SEEEEEESSBBSS----------------HHH--------HHTEEEEEEEEEEESSSS
T ss_pred CCcCEEEEeeccchH--------------HHHH--------HHhcCCCcEEEEEEccCC
Confidence 689999998643211 1222 245799999999888743
No 137
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.34 E-value=0.92 Score=42.26 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=63.2
Q ss_pred CeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 20 QRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 20 ~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+||=++ -|.+|.. +|+..+ ...|+| .|..++.. ..+..|++.+.-.+ ..++.-||..+-.. ..+
T Consensus 59 ~~vLDl~aGsG~~~l~--~a~~~~-~~~V~a--~Din~~Av---~~a~~N~~~N~~~~-~~v~~~Da~~~l~~----~~~ 125 (382)
T PRK04338 59 ESVLDALSASGIRGIR--YALETG-VEKVTL--NDINPDAV---ELIKKNLELNGLEN-EKVFNKDANALLHE----ERK 125 (382)
T ss_pred CEEEECCCcccHHHHH--HHHHCC-CCEEEE--EeCCHHHH---HHHHHHHHHhCCCc-eEEEhhhHHHHHhh----cCC
Confidence 4787666 5555554 666554 234555 55444333 24677886665333 34788888764221 456
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
||.|+.|.| |.. ..|+.+|-..++++|-|+||-.|
T Consensus 126 fD~V~lDP~--Gs~------------------~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 126 FDVVDIDPF--GSP------------------APFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred CCEEEECCC--CCc------------------HHHHHHHHHHhcCCCEEEEEecC
Confidence 999999987 541 13667777778999999999555
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.11 E-value=4.7 Score=33.54 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=67.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||-|.=.++..|++.. .. .|+.|..+++.+ .+.+++......+...+...| +.. ..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~--v~~~D~s~~~i~---~a~~~~~~~~~~~~i~~~~~d---~~~----~~ 125 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG---AK--VVASDISPQMVE---EARERAPEAGLAGNITFEVGD---LES----LL 125 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC---CE--EEEEECCHHHHH---HHHHHHHhcCCccCcEEEEcC---chh----cc
Confidence 3567899999955545566677653 23 566674444332 344444332211112222334 221 23
Q ss_pred CcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------
Q 041136 96 MKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------------------- 154 (214)
..||.|+.+.. |... .-+...++....++. |.+.|++....
T Consensus 126 ~~fD~v~~~~~l~~~~~----------------~~~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQ----------------EDAARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGGLFPGPSRT 187 (230)
T ss_pred CCcCEEEEcchhhcCCH----------------HHHHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhccccCCccCC
Confidence 57999998755 3221 012222233333443 33444432211
Q ss_pred ----CCCcccHhhHHHhcCCEEEEEecCCCC
Q 041136 155 ----PYNQWNVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 155 ----Py~~W~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
.++..++..+.+.+|+.+.+..++...
T Consensus 188 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 123345777888899999988776643
No 139
>PRK06202 hypothetical protein; Provisional
Probab=92.08 E-value=3.2 Score=35.10 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCCCeEEEEe--cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVG--EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+...+||-|| .|+++.. |++... .+.+...|+.|..+++.+ .+.+++ ...++.+.. +|+..+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~--L~~~~~~~g~~~~v~gvD~s~~~l~---~a~~~~---~~~~~~~~~-~~~~~l~~---- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAID--LARWARRDGLRLEVTAIDPDPRAVA---FARANP---RRPGVTFRQ-AVSDELVA---- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHH--HHHHHHhCCCCcEEEEEcCCHHHHH---HHHhcc---ccCCCeEEE-Eecccccc----
Confidence 5678999999 6665554 665431 123456778886555442 233322 223454433 45555542
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
...+||.|+.|+-
T Consensus 126 ~~~~fD~V~~~~~ 138 (232)
T PRK06202 126 EGERFDVVTSNHF 138 (232)
T ss_pred cCCCccEEEECCe
Confidence 3568999999976
No 140
>PRK07402 precorrin-6B methylase; Provisional
Probab=91.97 E-value=2.1 Score=35.35 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+.+||-+|-|.=+++..+++... +..+ ++.|...+..+ .+++|++.+...++.+ +.-||...-. .+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V--~~vD~s~~~~~---~a~~n~~~~~~~~v~~-~~~d~~~~~~--~~- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRV--IAIERDEEVVN---LIRRNCDRFGVKNVEV-IEGSAPECLA--QL- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCCeEE-EECchHHHHh--hC-
Confidence 445778999999777667777776643 3344 45565444442 4778887765434444 4456643111 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+|.|+.. +.. -+..+++.+..+|++||.+.+.
T Consensus 107 ~~~~d~v~~~----~~~----------------~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 107 APAPDRVCIE----GGR----------------PIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CCCCCEEEEE----CCc----------------CHHHHHHHHHHhcCCCeEEEEE
Confidence 1236777653 111 1255677788889999998776
No 141
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=91.89 E-value=4.5 Score=36.64 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+++||-|| .|.+++ .+++.. . . .++++|.......+ +......+. ..++. +...|+.++. +
T Consensus 122 ~g~~VLDIGCG~G~~~~--~la~~g-~-~--~V~GiD~S~~~l~q---~~a~~~~~~~~~~i~-~~~~d~e~lp----~- 186 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMW--RMLGAG-A-K--LVVGIDPSQLFLCQ---FEAVRKLLGNDQRAH-LLPLGIEQLP----A- 186 (322)
T ss_pred CCCEEEEeccCCcHHHH--HHHHcC-C-C--EEEEEcCCHHHHHH---HHHHHHhcCCCCCeE-EEeCCHHHCC----C-
Confidence 468999999 555555 466653 2 2 26778855443321 111111111 12343 3445776663 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cCCC------C---C----Ccc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RDDH------P---Y----NQW 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~~~------P---y----~~W 159 (214)
...||.|+.+ |. + .|..=...+++.+..+|++||++.++- .++. | | +.|
T Consensus 187 ~~~FD~V~s~----~v-----------l-~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 187 LKAFDTVFSM----GV-----------L-YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred cCCcCEEEEC----Ch-----------h-hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 5679999964 11 1 122223457888999999999987652 1211 2 2 122
Q ss_pred ------cHhhHHHhcCCEEEEEecCCC
Q 041136 160 ------NVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 160 ------~i~~lA~~~gl~l~~~~~F~~ 180 (214)
.+..+..++||...+......
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 256788899999888765544
No 142
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.47 E-value=0.54 Score=41.42 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||=||=|.=++|.+||+. + -..|+.|-.++..+ .|. +.+++ .|+. .+-.+..++.. ...+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---G--a~VtgiD~se~~I~---~Ak--~ha~e-~gv~--i~y~~~~~edl-~~~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---G--ASVTGIDASEKPIE---VAK--LHALE-SGVN--IDYRQATVEDL-ASAGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---C--CeeEEecCChHHHH---HHH--Hhhhh-cccc--ccchhhhHHHH-HhcCCC
Confidence 6789999996666777778885 2 34456673333221 111 22233 2333 11112222111 112378
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+-+= ++ .|-.--..|.++|.++++|+|.+.++
T Consensus 125 FDvV~cmE---------------Vl-EHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 125 FDVVTCME---------------VL-EHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccEEEEhh---------------HH-HccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 99998751 22 23334455999999999999999776
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=91.34 E-value=1 Score=39.04 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=68.9
Q ss_pred cCCCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCC
Q 041136 14 SHYTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHP 91 (214)
Q Consensus 14 ~~~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~ 91 (214)
.-.+..++||.+|-+ .|| |+-+|..+.... .-|+.|..++.. ..|.+|+++---.. +.++.+-||-+.-+.
T Consensus 55 ~~~~~~k~iLEiGT~~GyS-al~mA~~l~~~g--~l~tiE~~~e~~---~~A~~n~~~ag~~~~i~~~~~gdal~~l~~- 127 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYS-ALWMALALPDDG--RLTTIERDEERA---EIARENLAEAGVDDRIELLLGGDALDVLSR- 127 (219)
T ss_pred HHhcCCceEEEeecccCHH-HHHHHhhCCCCC--eEEEEeCCHHHH---HHHHHHHHHcCCcceEEEEecCcHHHHHHh-
Confidence 346688999999954 455 344566664333 444555444433 35778877765444 344444577765442
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|.-+- -+..-..||..+..+|++||-|.+-
T Consensus 128 -~~~~~fDliFIDa-------------------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -LLDGSFDLVFIDA-------------------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -ccCCCccEEEEeC-------------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 4568899986431 1234567889999999999988654
No 144
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.31 E-value=7.3 Score=33.37 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCCeEEEEecCc--hhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGD--FSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGn--FSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++||=+|=|+ |+++.+|. | +..++|.-.|.+..- -+.+|..+| .|-.-+..-|+++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l---G-a~~V~~vdiD~~a~e-----i~r~N~~~l--~g~v~f~~~dv~~~~------- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL---G-ASRVLAVDIDPEALE-----IARANAEEL--LGDVEFVVADVSDFR------- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc---C-CcEEEEEecCHHHHH-----HHHHHHHhh--CCceEEEEcchhhcC-------
Confidence 456687777555 44443332 3 457888777775432 256677763 344555666777653
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.+|.|.|. |... -++.+..|..+|+-|. +..++-... ..=.++..++..|..+...
T Consensus 107 ~~~dtvimNPPF-G~~~---------rhaDr~Fl~~Ale~s~--------vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 107 GKFDTVIMNPPF-GSQR---------RHADRPFLLKALEISD--------VVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred CccceEEECCCC-cccc---------ccCCHHHHHHHHHhhh--------eEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 568999999997 3211 1456788888887773 333322211 3445667888888655443
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.86 E-value=0.35 Score=39.72 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccCCC
Q 041136 14 SHYTNNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTMDR 89 (214)
Q Consensus 14 ~~~~~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L~~ 89 (214)
.....+.+||.+|=| =.|.+ +++.. .+..|++|=++. +. +..+.|++.... .+.......|-.+-..
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~--~a~~~-~~~~Vv~TD~~~---~l---~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~ 111 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIA--AAKLF-GAARVVLTDYNE---VL---ELLRRNIELNGSLLDGRVSVRPLDWGDELD 111 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHH--HHHT--T-SEEEEEE-S----HH---HHHHHHHHTT--------EEEE--TTS-HH
T ss_pred hhhcCCceEEEECCccchhHHH--HHhcc-CCceEEEeccch---hh---HHHHHHHHhccccccccccCcEEEecCccc
Confidence 346678899999965 34444 44443 356899998876 22 245566665431 1111112222111000
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...+...+||.||- . .+-++.+++..++.....+|+++|.|.++...-
T Consensus 112 ~~~~~~~~~D~Ila------s----------Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 112 SDLLEPHSFDVILA------S----------DVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHHS-SSBSEEEE------E----------S--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCCEEEE------e----------cccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 01123467999873 2 134677899999999999999999998886543
No 146
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=90.76 E-value=9.2 Score=32.66 Aligned_cols=128 Identities=21% Similarity=0.357 Sum_probs=78.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++.|||=+|=||=++=..|.+. .++.+.+.|..++ ++.+..+.|+.|+.+==-+.|. .+..++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~----k~v~g~GvEid~~----------~v~~cv~rGv~Viq~Dld~gL~---~f~d~s 75 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE----KQVDGYGVEIDPD----------NVAACVARGVSVIQGDLDEGLA---DFPDQS 75 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh----cCCeEEEEecCHH----------HHHHHHHcCCCEEECCHHHhHh---hCCCCC
Confidence 3689999994444444444443 3678888885433 4556666899877652112333 367899
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--------------------CCCCC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--------------------DHPYN 157 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--------------------~~Py~ 157 (214)
||.||.+- ..+.++.=.++|.. +|+-+.++.||.-+ .-||.
T Consensus 76 FD~VIlsq------------tLQ~~~~P~~vL~E-------mlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 76 FDYVILSQ------------TLQAVRRPDEVLEE-------MLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYE 136 (193)
T ss_pred ccEEehHh------------HHHhHhHHHHHHHH-------HHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 99999752 11222333445443 45556666666432 23665
Q ss_pred ccc-----------HhhHHHhcCCEEEEEecCCCC
Q 041136 158 QWN-----------VMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 158 ~W~-----------i~~lA~~~gl~l~~~~~F~~~ 181 (214)
.|+ .++++++.|+...++..++..
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 554 678999999999998877754
No 147
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=90.76 E-value=3.1 Score=35.75 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=81.4
Q ss_pred CCCCC-eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-C--
Q 041136 16 YTNNQ-RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-P-- 91 (214)
Q Consensus 16 ~~~~~-~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~-- 91 (214)
+.+.. +||.||=|.=-=+.-+|+++. +|+=..=|-.+.+. +.....+++-...++.-=..+|+++-.-. .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP---~l~WqPSD~~~~~~---~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP---HLTWQPSDPDDNLR---PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP 95 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC---CCEEcCCCCChHHH---hhHHHHHHhcCCcccCCCeEeecCCCCCccccc
Confidence 34445 499999887666666788874 34433333333322 12223333332223433345677754211 0
Q ss_pred -CCCCCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE---ecCCCCC----------
Q 041136 92 -TLSQMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT---LRDDHPY---------- 156 (214)
Q Consensus 92 -~~~~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT---l~~~~Py---------- 156 (214)
.+....||.|+- |.=|+-. ......+|+.|.++|+++|.+.+. -.+|+..
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p---------------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~s 160 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISP---------------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDAS 160 (204)
T ss_pred cccCCCCcceeeehhHHHhcC---------------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHH
Confidence 123568898864 4444432 457899999999999999998776 1122210
Q ss_pred -----Cccc------HhhHHHhcCCEEEEEe
Q 041136 157 -----NQWN------VMGLADKLGLVLKEKV 176 (214)
Q Consensus 157 -----~~W~------i~~lA~~~gl~l~~~~ 176 (214)
-.|. +..+|+++||.+.+..
T Consensus 161 Lr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 161 LRSRDPEWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred HhcCCCCcCccCHHHHHHHHHHCCCccCccc
Confidence 0243 5579999999998754
No 148
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=90.72 E-value=0.22 Score=36.19 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-||=|.=+++..|++.+. ..--|+.|..+.+.+ .+++.+..... .......++..++... ...++||.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~---~~~~~~~D~s~~~l~---~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP---DARYTGVDISPSMLE---RARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTS---TTCCCHHHCT----EEEEE--SSS---C--CC----SEEE
T ss_pred CEeCccChHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceeh
Confidence 4466444444444888762 455567775444332 23333444332 2233445555554432 2226899999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
.++-..=. +-+..+++++..+|+|||.+
T Consensus 72 ~~~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 72 ASNVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EE-TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 88543221 23557888999999999975
No 149
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=90.59 E-value=2.8 Score=35.80 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.++..|++. +..+ ++.|..+++.+ .+.++.. .. -+...|+..+. +...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v--~~~D~s~~~l~---~a~~~~~-----~~-~~~~~d~~~~~----~~~~ 102 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQV--TALDLSPPMLA---QARQKDA-----AD-HYLAGDIESLP----LATA 102 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeE--EEEECCHHHHH---HHHhhCC-----CC-CEEEcCcccCc----CCCC
Confidence 45678999984443445556653 2344 45564333331 1222211 11 23445665543 4556
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.|++..-.. -+..++..+..+|++||.+.++.
T Consensus 103 ~fD~V~s~~~l~~~~----------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 103 TFDLAWSNLAVQWCG----------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cEEEEEECchhhhcC----------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 899999998754221 12456777889999999997763
No 150
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.26 E-value=0.33 Score=43.19 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCCCCeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
=..+++||=. |-|.-|. .||...+....|+|.=.+.. -+. ...+|++.+--.++.+.. .|++++... .
T Consensus 83 ~~~~~~VLD~CAapGgKt~--~la~~~~~~g~i~A~D~~~~-Rl~----~l~~~~~r~g~~~v~~~~-~D~~~~~~~--~ 152 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTT--HLAELMGNKGEIVANDISPK-RLK----RLKENLKRLGVFNVIVIN-ADARKLDPK--K 152 (283)
T ss_dssp TTTTSEEEESSCTTSHHHH--HHHHHTTTTSEEEEEESSHH-HHH----HHHHHHHHTT-SSEEEEE-SHHHHHHHH--H
T ss_pred ccccccccccccCCCCcee--eeeecccchhHHHHhccCHH-HHH----HHHHHHHhcCCceEEEEe-ecccccccc--c
Confidence 3455566543 4666665 47777765556777644432 222 244566655444444444 899887431 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhcc----CCCCEEEEEecCCCCC-CcccHh
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREML----GEGGEVHVTLRDDHPY-NQWNVM 162 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL----~~~G~i~VTl~~~~Py-~~W~i~ 162 (214)
....||+|+-+=|+.|.+.=..... ...+....++=...+.+|.+++ ++||.+.-+.|.=.|- +.-.|.
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 2346999999999998732111111 1123334455567788999999 9999998888875553 344455
Q ss_pred hHHHhc-CCEEEE
Q 041136 163 GLADKL-GLVLKE 174 (214)
Q Consensus 163 ~lA~~~-gl~l~~ 174 (214)
...+++ .+.+..
T Consensus 233 ~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 233 KFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHSTSEEEEC
T ss_pred HHHHhCCCcEEEe
Confidence 544444 565543
No 151
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=90.23 E-value=1.2 Score=39.92 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=68.9
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
++||++|=|+=+.++.+.++.. -..+++.-+|.. -++.++|-.-..+... .--+.|+.+ |+-+.-+. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~-Dg~~~v~~---~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIID-DGVEFLRD---CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEec-cHHHHHHh---CCCcC
Confidence 6999999999999999999875 457888888864 3555555211111111 223444443 33332111 12379
Q ss_pred cEEEEcCCC-CCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 99 DVIIFNFPH-AGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 99 D~IiFNFPH-~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|.||-+--- .|... .-.=..||+.|...|+++|-+.+-
T Consensus 151 DvIi~D~tdp~gp~~-------------~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGPAE-------------ALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCccc-------------ccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999988533 34311 123578999999999999976555
No 152
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.04 E-value=4.1 Score=38.57 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCCeEEEEecCchhHHHHHHHH--hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CC-EEEEccccccCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA--FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GC-LVLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~--~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~-~Vl~~VDAt~L~~~~ 91 (214)
.-.++|++|-||= +|+-+. +..-..|+-.-+|.+-.-..+ -.+.+..++.. +- .-.++-||-+--+
T Consensus 289 ~a~~vLvlGGGDG---LAlRellkyP~~~qI~lVdLDP~miela~---~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr-- 360 (508)
T COG4262 289 GARSVLVLGGGDG---LALRELLKYPQVEQITLVDLDPRMIELAS---HATVLRALNQGSFSDPRVTVVNDDAFQWLR-- 360 (508)
T ss_pred ccceEEEEcCCch---HHHHHHHhCCCcceEEEEecCHHHHHHhh---hhhHhhhhccCCccCCeeEEEeccHHHHHH--
Confidence 4567999998873 344333 332356777778865321111 11233444321 11 2234445544211
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHh
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADK 167 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~ 167 (214)
-....||.||-++|.....+ .-|--=..|+.+++.-|+++|.+.|- .|.|| .-|.|..--++
T Consensus 361 -~a~~~fD~vIVDl~DP~tps-----------~~rlYS~eFY~ll~~~l~e~Gl~VvQ--ags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 361 -TAADMFDVVIVDLPDPSTPS-----------IGRLYSVEFYRLLSRHLAETGLMVVQ--AGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred -hhcccccEEEEeCCCCCCcc-----------hhhhhhHHHHHHHHHhcCcCceEEEe--cCCCccCCceeeeehhHHHh
Confidence 13468999999999987542 12334568999999999999987765 44555 47999998899
Q ss_pred cCCEE
Q 041136 168 LGLVL 172 (214)
Q Consensus 168 ~gl~l 172 (214)
+|+..
T Consensus 427 AG~~~ 431 (508)
T COG4262 427 AGYRV 431 (508)
T ss_pred Cccee
Confidence 88654
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=89.90 E-value=7 Score=32.12 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~~ 95 (214)
+.+.+||-||=|+=.++..|++..+ ..+++.|..++..+ ..+..++.++ ..|+.. +. .+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~giD~s~~~i~----------~a~~~~~~~~-~~d~~~~l~---~~~~ 73 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ----VRGYGIEIDQDGVL----------ACVARGVNVI-QGDLDEGLE---AFPD 73 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC----CcEEEEeCCHHHHH----------HHHHcCCeEE-EEEhhhccc---ccCC
Confidence 3567999999555566777876543 23467785444332 2223455544 345543 21 2445
Q ss_pred CcccEEEEcCC
Q 041136 96 MKFDVIIFNFP 106 (214)
Q Consensus 96 ~~FD~IiFNFP 106 (214)
++||.|+.|.+
T Consensus 74 ~sfD~Vi~~~~ 84 (194)
T TIGR02081 74 KSFDYVILSQT 84 (194)
T ss_pred CCcCEEEEhhH
Confidence 78999999976
No 154
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=89.82 E-value=2.8 Score=36.80 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCCCeEEEEe--cCchhHHHH--HHHHhCC----CCcEEEeecCChHH--HHh-cCccHH-HHH--HHHHh----C-C--
Q 041136 17 TNNQRILLVG--EGDFSFSDC--LARAFGS----ATNMVASSLDSERT--LKT-KHWTSQ-AHL--QSLWS----R-G-- 75 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~s--La~~~~~----~~~l~ATs~ds~~~--l~~-kY~~a~-~ni--~~L~~----~-g-- 75 (214)
.+..+||-+| .|.-.+|+| |++.... ...|+||=++...- ..+ -|+... .++ ..++. . |
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 4557899987 777655554 5565432 34577765554321 111 233211 111 01110 0 1
Q ss_pred --------CEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 76 --------CLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 76 --------~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
...+...|+.++. +..++||.|+...= .+..+.......++....+|+|||.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnv--------------l~yf~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNV--------------LIYFDEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC----CccCCCCEEEechh--------------HHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1222334554432 23467999986211 122234556677778889999999999
Q ss_pred EEecCCC
Q 041136 148 VTLRDDH 154 (214)
Q Consensus 148 VTl~~~~ 154 (214)
|-..+.-
T Consensus 240 lg~~E~~ 246 (264)
T smart00138 240 LGHSESL 246 (264)
T ss_pred EECcccC
Confidence 9876644
No 155
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=89.76 E-value=4.4 Score=35.32 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++..|++.+........++.|..++..+ .|.++ ..++.++. -|+.++. +...+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~---~A~~~-----~~~~~~~~-~d~~~lp----~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIK---YAAKR-----YPQVTFCV-ASSHRLP----FADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH---HHHHh-----CCCCeEEE-eecccCC----CcCCc
Confidence 457899999444445666877764222245688885444432 12221 12344433 3666653 55678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhh
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMG 163 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~ 163 (214)
||.|+.+|-. . . ++....+|++||.+.+... .|...|.+..
T Consensus 152 fD~I~~~~~~--~-------~--------------~~e~~rvLkpgG~li~~~p--~~~~l~el~~ 192 (272)
T PRK11088 152 LDAIIRIYAP--C-------K--------------AEELARVVKPGGIVITVTP--GPRHLFELKG 192 (272)
T ss_pred eeEEEEecCC--C-------C--------------HHHHHhhccCCCEEEEEeC--CCcchHHHHH
Confidence 9999987621 0 0 1224568999999866532 2345565544
No 156
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=89.68 E-value=8.6 Score=32.73 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH----HH---H-hCCC-EEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ----SL---W-SRGC-LVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~----~L---~-~~g~-~Vl~~VDAt~L 87 (214)
.+..|||.+|.|.=--+..||++ | . -+|+.|.-+...++- .++.++. .+ + ..+. .-+.-.|..++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~--~V~gvD~S~~Ai~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--H--RVLGVELSEIAVEQF-FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--C--eEEEEeCCHHHHHHH-HHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46679999998877777778863 3 3 456677433322210 0000110 00 0 0011 12234455555
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEec
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLR 151 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~ 151 (214)
... ....||.|+=. +. .+..+.++-..+++....+|+|||.+ .+|+.
T Consensus 107 ~~~---~~~~fD~i~D~----~~----------~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAA---DLGPVDAVYDR----AA----------LIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred Ccc---cCCCcCEEEec----hh----------hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 421 12346655321 10 01224566777999999999999984 66665
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=88.99 E-value=3.6 Score=34.32 Aligned_cols=115 Identities=17% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.-.+.++|=++=|.=+++..++.. + +. .+|..|......+ .+.+|++.+...+-..++.-|+.+.-+. ...
T Consensus 46 ~~~~g~~vLDLfaGsG~lglea~sr-g-a~--~v~~vE~~~~a~~---~~~~N~~~~~~~~~~~~~~~D~~~~l~~-~~~ 117 (189)
T TIGR00095 46 PEIQGAHLLDVFAGSGLLGEEALSR-G-AK--VAFLEEDDRKANQ---TLKENLALLKSGEQAEVVRNSALRALKF-LAK 117 (189)
T ss_pred HhcCCCEEEEecCCCcHHHHHHHhC-C-CC--EEEEEeCCHHHHH---HHHHHHHHhCCcccEEEEehhHHHHHHH-hhc
Confidence 3446788877765544555445543 2 22 3566665544432 4677888876433334577788442111 011
Q ss_pred C-CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 95 Q-MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 95 ~-~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
. ..||.|+.+.|.... ...+++..... ..+|+++|-|.+.+..
T Consensus 118 ~~~~~dvv~~DPPy~~~-------------~~~~~l~~l~~--~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 118 KPTFDNVIYLDPPFFNG-------------ALQALLELCEN--NWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCceEEEECcCCCCC-------------cHHHHHHHHHH--CCCCCCCeEEEEEecC
Confidence 2 346777777777421 12445554332 4689999988887554
No 158
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=88.78 E-value=5.6 Score=32.03 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ..++|.-.|. .+. ..+++|+.. ..++. ++.-|+.++. +...
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~~--~~~---~~~~~~~~~--~~~v~-ii~~D~~~~~----~~~~ 76 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--ARVTAIEIDP--RLA---PRLREKFAA--ADNLT-VIHGDALKFD----LPKL 76 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECCH--HHH---HHHHHHhcc--CCCEE-EEECchhcCC----cccc
Confidence 45679999996666666667765 2 3565555553 332 134444432 12344 4566787764 2334
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
.||.|+.|.|.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999999997
No 159
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=88.68 E-value=1.9 Score=38.66 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH--HHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ--SLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~--~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++||=||=|.==-|-.||+.= =..|+.|--+++.+ .|++... -..+.++....+-+.+.++.. ..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-----a~V~GID~s~~~V~---vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-----AQVTGIDASDDMVE---VANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TG 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-----CeeEeecccHHHHH---HHHHhhhcCchhccccceeeehhhcchhhc----cc
Confidence 5779999944332333377642 24567785454443 2333321 123345666666666766652 34
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+-- + +-.|-+-+..|..++.++|+|+|.++||
T Consensus 158 ~fDaVvcs---------------e-vleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 158 KFDAVVCS---------------E-VLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred ccceeeeH---------------H-HHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 49999841 2 4468888999999999999999999887
No 160
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=87.71 E-value=2.1 Score=38.08 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCC
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDD 153 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~ 153 (214)
++.|+.| ||-++-+ .|...+||.||-+.|-...- -.---..|+.--..+|++||++ |-+=.-|
T Consensus 186 ~i~iilG-D~~e~V~--~~~D~sfDaIiHDPPRfS~A-------------geLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 186 AIKIILG-DAYEVVK--DFDDESFDAIIHDPPRFSLA-------------GELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ccEEecc-cHHHHHh--cCCccccceEeeCCCccchh-------------hhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 3455554 3333322 37788999999999987641 1112345666666899999996 8883333
Q ss_pred CCCCccc----HhhHHHhcCCEEEEE
Q 041136 154 HPYNQWN----VMGLADKLGLVLKEK 175 (214)
Q Consensus 154 ~Py~~W~----i~~lA~~~gl~l~~~ 175 (214)
+-|.--| |.+...+.||...+.
T Consensus 250 ~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 250 KRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred cccccCChhHHHHHHHHhcCceeeee
Confidence 3344444 455667789986553
No 161
>PRK13699 putative methylase; Provisional
Probab=87.58 E-value=1.9 Score=37.15 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=56.9
Q ss_pred EEEEccccccCCCCCCCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 77 LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 77 ~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
++++| ||.++-+ .+..+++|.||...|=- |.+.. .++... .....+.+..+|..+..+|+++|.+.+- +.
T Consensus 3 ~l~~g-D~le~l~--~lpd~SVDLIiTDPPY~i~~~~~-~~~~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~--- 73 (227)
T PRK13699 3 RFILG-NCIDVMA--RFPDNAVDFILTDPPYLVGFRDR-QGRTIA-GDKTDEWLQPACNEMYRVLKKDALMVSF-YG--- 73 (227)
T ss_pred eEEec-hHHHHHH--hCCccccceEEeCCCcccccccC-CCcccc-cccHHHHHHHHHHHHHHHcCCCCEEEEE-ec---
Confidence 34444 7765432 36788999999999985 32110 111100 0112467889999999999998877553 11
Q ss_pred CCcc-cHhhHHHhcCCEEEEEecCCC
Q 041136 156 YNQW-NVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 156 y~~W-~i~~lA~~~gl~l~~~~~F~~ 180 (214)
++.. .+..+..+.|+.+....-.+.
T Consensus 74 ~~~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 74 WNRVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cccHHHHHHHHHHCCCEEeeEEEEEC
Confidence 1111 134456788998887665554
No 162
>PRK06940 short chain dehydrogenase; Provisional
Probab=86.95 E-value=4.3 Score=35.04 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-----
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL----- 93 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~----- 93 (214)
+.+|+.|=| ...+++|+.+..+.+|++++.+.. . .++..+.|+..|.. ..+.+|+++.+....+
T Consensus 3 k~~lItGa~--gIG~~la~~l~~G~~Vv~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGAG--GIGQAIARRVGAGKKVLLADYNEE-N-------LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECCC--hHHHHHHHHHhCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 467777754 466678887766678999887642 2 22234555555654 4577898875442111
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
...++|.||.|--
T Consensus 73 ~~g~id~li~nAG 85 (275)
T PRK06940 73 TLGPVTGLVHTAG 85 (275)
T ss_pred hcCCCCEEEECCC
Confidence 1246899998854
No 163
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=86.69 E-value=8.1 Score=34.41 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEE-EccccccCCCCC-CCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL-HGVNVHTMDRHP-TLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl-~~VDAt~L~~~~-~~~ 94 (214)
.+..+||-+|=|+=.++..|++++.. ....+++|-.+++.+ .+.+++..- .-++.|. ..-|.++....+ ...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~---~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALK---ESAAALAAD-YPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHH---HHHHHHHhh-CCCceEEEEEEcccchhhhhcccc
Confidence 35678999999999999999998742 244678885554442 344444321 1234442 334766532211 111
Q ss_pred CCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
. ..+.|+| ..+ .|- ..++-...||+.+...|+|||.+.|.+-
T Consensus 136 ~-~~~~~~~~gs~-~~~-------------~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 136 A-GRRLGFFPGST-IGN-------------FTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred c-CCeEEEEeccc-ccC-------------CCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 1222332 111 111 1233456888999999999999887653
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=86.65 E-value=12 Score=33.90 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++||.||=|..=++ ..+++.+.+ +-..+++|..++..+ .|.+++....... -.-+.-.||.++.. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p--~~~~~giD~d~~ai~---~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----~l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP--TTSFHNFDIDPSAND---VARRLVSSDPDLSKRMFFHTADVMDVTE----SL 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC--CCEEEEEeCCHHHHH---HHHHHhhhccCccCCcEEEECchhhccc----cc
Confidence 6789999998877553 334444433 447788887766553 4666664422222 24445577876522 13
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..||.|... =-++.. +. ..+ ..|+.....|++||.+.+-...|
T Consensus 194 ~~FDlVF~~-ALi~~d---k~-------~k~----~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 194 KEYDVVFLA-ALVGMD---KE-------EKV----KVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CCcCEEEEe-cccccc---cc-------cHH----HHHHHHHHhcCCCcEEEEecccc
Confidence 569999887 222331 01 112 23445668899999999887554
No 165
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=86.58 E-value=2 Score=34.57 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
++.++.+ |+.+|. +..++||.|+.+| +.. |-.=...+++.+..+|+|||.+.|.-.
T Consensus 27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~-------------~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLR-------------NVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred ceEEEEe-chhhCC----CCCCCeeEEEecc---hhh-------------cCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 3566665 888874 5667899999875 110 000124677889999999999977643
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=86.55 E-value=7.4 Score=33.00 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=62.1
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
...++...+||=||-|.=+++.+|++++. ++-+|.+|-.+.+. .+.+ ..-.-+..-|.. ..
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp~v~~----~~~~-------~~rv~~~~gd~f--~~--- 155 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYP---NLRATVFDLPEVIE----QAKE-------ADRVEFVPGDFF--DP--- 155 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHST---TSEEEEEE-HHHHC----CHHH-------TTTEEEEES-TT--TC---
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCC---CCcceeeccHhhhh----cccc-------ccccccccccHH--hh---
Confidence 34677888999999888888888999985 67899999866543 3433 233333444444 22
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC--CEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG--GEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~--G~i~VT 149 (214)
+- . +|.|++..=-.-. ..+-....++.+...|+|+ |+|.|.
T Consensus 156 ~P-~-~D~~~l~~vLh~~--------------~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 156 LP-V-ADVYLLRHVLHDW--------------SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp CS-S-ESEEEEESSGGGS---------------HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hc-c-ccceeeehhhhhc--------------chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 22 2 8998884322122 1223334455577779988 998665
No 167
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=85.90 E-value=11 Score=33.95 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHH-hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARA-FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~-~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+++||=||-| |=-+|+|-. +| +..++|.=.|....- .+.+|++...-.. .+.... .. ....
T Consensus 160 ~~g~~vLDvG~G--SGILaiaA~klG-A~~v~a~DiDp~Av~-----~a~~N~~~N~~~~-~~~v~~----~~---~~~~ 223 (295)
T PF06325_consen 160 KPGKRVLDVGCG--SGILAIAAAKLG-AKKVVAIDIDPLAVE-----AARENAELNGVED-RIEVSL----SE---DLVE 223 (295)
T ss_dssp STTSEEEEES-T--TSHHHHHHHHTT-BSEEEEEESSCHHHH-----HHHHHHHHTT-TT-CEEESC----TS---CTCC
T ss_pred cCCCEEEEeCCc--HHHHHHHHHHcC-CCeEEEecCCHHHHH-----HHHHHHHHcCCCe-eEEEEE----ec---cccc
Confidence 456799999966 334445333 44 457888888876432 4777766553222 332221 11 1223
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc-HhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN-VMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~-i~~lA~~~gl~l~~ 174 (214)
.+||.|+-|= ....|.........+|+++|.+.++ |-.....+ |.+..+ .||.+.+
T Consensus 224 ~~~dlvvANI-------------------~~~vL~~l~~~~~~~l~~~G~lIlS---GIl~~~~~~v~~a~~-~g~~~~~ 280 (295)
T PF06325_consen 224 GKFDLVVANI-------------------LADVLLELAPDIASLLKPGGYLILS---GILEEQEDEVIEAYK-QGFELVE 280 (295)
T ss_dssp S-EEEEEEES--------------------HHHHHHHHHHCHHHEEEEEEEEEE---EEEGGGHHHHHHHHH-TTEEEEE
T ss_pred ccCCEEEECC-------------------CHHHHHHHHHHHHHhhCCCCEEEEc---cccHHHHHHHHHHHH-CCCEEEE
Confidence 8899999772 2445666777778889999999887 33223333 344334 4998876
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 281 ~ 281 (295)
T PF06325_consen 281 E 281 (295)
T ss_dssp E
T ss_pred E
Confidence 4
No 168
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=85.05 E-value=6.2 Score=36.76 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=60.9
Q ss_pred eEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 21 RILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 21 ~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
+||-+ |-|-++.- .++..+....|+|.=.+ .+.. ....+|++.+...++.|.. -||.++-.. ...+|
T Consensus 47 ~vLD~faGsG~rgir--~a~e~~ga~~Vv~nD~n--~~Av---~~i~~N~~~N~~~~~~v~~-~Da~~~l~~---~~~~f 115 (374)
T TIGR00308 47 NIADALSASGIRAIR--YAHEIEGVREVFANDIN--PKAV---ESIKNNVEYNSVENIEVPN-EDAANVLRY---RNRKF 115 (374)
T ss_pred EEEECCCchhHHHHH--HHhhCCCCCEEEEEeCC--HHHH---HHHHHHHHHhCCCcEEEEc-hhHHHHHHH---hCCCC
Confidence 55444 44544443 55543223456664443 3332 2477788766543444444 477765332 13579
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
|.|..+.| |.. ..|+.+|-+.++++|-++||--|
T Consensus 116 DvIdlDPf--Gs~------------------~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 116 HVIDIDPF--GTP------------------APFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred CEEEeCCC--CCc------------------HHHHHHHHHhcccCCEEEEEecc
Confidence 99999986 431 14888999999999999999444
No 169
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=84.70 E-value=5.9 Score=34.78 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccC-CCCC
Q 041136 15 HYTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTM-DRHP 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L-~~~~ 91 (214)
-....++||.||-+ .+| ++++|+..+....|+ ++|..++.. .-|.+|++..-- ..+.++.| ||.+. .+..
T Consensus 76 ~~~~ak~iLEiGT~~GyS-al~la~al~~~g~v~--tiE~~~~~~---~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~ 148 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYS-LLATALALPEDGKIL--AMDINRENY---ELGLPVIQKAGVAHKIDFREG-PALPVLDQMI 148 (247)
T ss_pred HHhCCCEEEEEeChhhHH-HHHHHhhCCCCCEEE--EEeCCHHHH---HHHHHHHHHCCCCCceEEEec-cHHHHHHHHH
Confidence 35678899999963 233 455677665434444 445434333 236677765432 23445544 55432 1100
Q ss_pred -CC-CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 92 -TL-SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 92 -~~-~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.. ...+||.|..+-- +..-..+|..+.++|++||-|.+
T Consensus 149 ~~~~~~~~fD~iFiDad-------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred hccccCCcccEEEecCC-------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 1357999988621 22334677888899999998765
No 170
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=84.38 E-value=3.3 Score=33.53 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=48.0
Q ss_pred eecCChHHHHhcCccHHHHHHHHHhCCC---EEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh
Q 041136 49 SSLDSERTLKTKHWTSQAHLQSLWSRGC---LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH 125 (214)
Q Consensus 49 Ts~ds~~~l~~kY~~a~~ni~~L~~~g~---~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n 125 (214)
-+||.+++..+ .. -+.|++.|. ..++...=.+|.++ +...+.|.||||+=-..++ ++.-- -.
T Consensus 3 yaFDIQ~~Ai~---~T---~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPgg--Dk~i~-----T~ 67 (140)
T PF06962_consen 3 YAFDIQEEAIE---NT---RERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGG--DKSIT-----TK 67 (140)
T ss_dssp EEEES-HHHHH---HH---HHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS---TTSB-------
T ss_pred EEEECHHHHHH---HH---HHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCC--CCCCC-----cC
Confidence 36787776542 23 344444432 33344344445543 3336899999998666432 22211 12
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 126 KNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 126 ~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+---.=++.|..+|++||.|.|++=-|.|
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 233334467788999999999999888877
No 171
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.28 E-value=1 Score=37.37 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-.|-|.+||+.|.-+ +-.+-++|-.++..+ -+..|.++++- .+ -+...|.+++. +.+..||..|
T Consensus 55 LgcgcGmLs~a~sm~~------~e~vlGfDIdpeALE---If~rNaeEfEv-qi-dlLqcdildle----~~~g~fDtav 119 (185)
T KOG3420|consen 55 LGCGCGMLSIAFSMPK------NESVLGFDIDPEALE---IFTRNAEEFEV-QI-DLLQCDILDLE----LKGGIFDTAV 119 (185)
T ss_pred hcCchhhhHHHhhcCC------CceEEeeecCHHHHH---HHhhchHHhhh-hh-heeeeeccchh----ccCCeEeeEE
Confidence 5667999998755432 344556675544432 35566666652 22 34455666654 5668999999
Q ss_pred EcCCCC
Q 041136 103 FNFPHA 108 (214)
Q Consensus 103 FNFPH~ 108 (214)
||.|.=
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 999973
No 172
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=82.53 E-value=26 Score=31.92 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCeEEEEecCchhHHHHHHHH-hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA-FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~-~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+++|=||-| |=-+|+|-+ +| +..++|+=+|+...-. +.+|.+.+ |+.- .+-+............
T Consensus 162 ~g~~vlDvGcG--SGILaIAa~kLG-A~~v~g~DiDp~AV~a-----a~eNa~~N---~v~~--~~~~~~~~~~~~~~~~ 228 (300)
T COG2264 162 KGKTVLDVGCG--SGILAIAAAKLG-AKKVVGVDIDPQAVEA-----ARENARLN---GVEL--LVQAKGFLLLEVPENG 228 (300)
T ss_pred CCCEEEEecCC--hhHHHHHHHHcC-CceEEEecCCHHHHHH-----HHHHHHHc---CCch--hhhcccccchhhcccC
Confidence 67889999955 233334333 44 5579999888876533 55565543 3331 0001111111112346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-ecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-LRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||-|= +. +.|..+..-...+|+|+|.+.++ +-. -..+.|.+.....|+.+.+.
T Consensus 229 ~~DvIVANI--LA-----------------~vl~~La~~~~~~lkpgg~lIlSGIl~---~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 229 PFDVIVANI--LA-----------------EVLVELAPDIKRLLKPGGRLILSGILE---DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred cccEEEehh--hH-----------------HHHHHHHHHHHHHcCCCceEEEEeehH---hHHHHHHHHHHhCCCeEeEE
Confidence 899999885 22 12334445566789999998777 111 13778888888899998874
No 173
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=82.06 E-value=14 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++.++ . ...|+.|..++..+ .|.+++ .++.+. ..|+.+ .+..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~--~~v~giDiS~~~l~---~A~~~~-----~~~~~~-~~d~~~-----~~~~ 103 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-F--KHIYGVEINEYAVE---KAKAYL-----PNINII-QGSLFD-----PFKD 103 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-C--CeEEEEECCHHHHH---HHHhhC-----CCCcEE-EeeccC-----CCCC
Confidence 45678899999444444555777653 2 34566675444432 233322 134443 335543 2456
Q ss_pred CcccEEEEcCC
Q 041136 96 MKFDVIIFNFP 106 (214)
Q Consensus 96 ~~FD~IiFNFP 106 (214)
.+||.|+.+.-
T Consensus 104 ~sfD~V~~~~v 114 (204)
T TIGR03587 104 NFFDLVLTKGV 114 (204)
T ss_pred CCEEEEEECCh
Confidence 78999998764
No 174
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.48 E-value=9.2 Score=31.14 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCCC----CCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC-CEE
Q 041136 98 FDVIIFNFPHAGHSP----PLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG-LVL 172 (214)
Q Consensus 98 FD~IiFNFPH~G~~~----~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g-l~l 172 (214)
.|.||...|=-.... .....+.+ ...-.+.+..++..+..+|+++|.+.|-+-+-. ...+-+..+....| +.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~-~~~~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKN-HEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE-IAGFLFELALEIFGGFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE-ECTHHHHHHHHHHTT-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCC-HHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh-hhHHHHHHHHHHhhhhhe
Confidence 388999999775432 01111111 344567899999999999999999988765532 22222333444557 888
Q ss_pred EEEecCCCC
Q 041136 173 KEKVEFLKQ 181 (214)
Q Consensus 173 ~~~~~F~~~ 181 (214)
.........
T Consensus 79 ~~~iiW~K~ 87 (231)
T PF01555_consen 79 RNEIIWNKP 87 (231)
T ss_dssp EEEEEEE-S
T ss_pred eccceeEec
Confidence 776555544
No 175
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=81.02 E-value=12 Score=33.80 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=71.2
Q ss_pred CccccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCC---CcEEEeecCChHHHHhcCccHHHHH--HHHHhCCCEEEE
Q 041136 8 KKVKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSA---TNMVASSLDSERTLKTKHWTSQAHL--QSLWSRGCLVLH 80 (214)
Q Consensus 8 ~~~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~---~~l~ATs~ds~~~l~~kY~~a~~ni--~~L~~~g~~Vl~ 80 (214)
+-.-|+.|... .++|=|+ .||..|- |.++..+. .+=..|..|...+.+. -+++.- .-|+...+..+.
T Consensus 91 ~~v~~L~p~~~-m~~lDvaGGTGDiaFr--il~~v~s~~~~~~~~V~v~Dinp~mL~---vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 91 MFVSKLGPGKG-MKVLDVAGGTGDIAFR--ILRHVKSQFGDRESKVTVLDINPHMLA---VGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred HhhhccCCCCC-CeEEEecCCcchhHHH--HHHhhccccCCCCceEEEEeCCHHHHH---HHHHHHhhcCCCcCCceEEE
Confidence 34445666665 7887775 8999887 77765431 2244566774444332 122211 346666677888
Q ss_pred ccccccCCCCCCCCCCcccEEEE-----cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIF-----NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiF-----NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+-||.+|. |....||+..- |+||.-. =++-|-.+|+|||++.+...
T Consensus 165 ~~dAE~Lp----Fdd~s~D~yTiafGIRN~th~~k---------------------~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 165 EGDAEDLP----FDDDSFDAYTIAFGIRNVTHIQK---------------------ALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred eCCcccCC----CCCCcceeEEEecceecCCCHHH---------------------HHHHHHHhcCCCcEEEEEEc
Confidence 88999996 77888998743 5555321 12347889999999865544
No 176
>PRK06128 oxidoreductase; Provisional
Probab=80.27 E-value=21 Score=31.07 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++||+.| .|..- .++++.+. .+.+|+.+..+.+.. ...+.++.++..|.. ..+.+|.++.+....+
T Consensus 55 ~k~vlITGas~gIG--~~~a~~l~~~G~~V~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIG--RATAIAFAREGADIALNYLPEEEQ------DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHH--HHHHHHHHHcCCEEEEEeCCcchH------HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 47899999 45443 34555542 245787776654321 133345566666654 4567888875442111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
.-.+.|.||.|--
T Consensus 127 ~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 127 RAVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 1136899998853
No 177
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=79.73 E-value=1.7 Score=36.99 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--CCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--PTL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~~~ 93 (214)
..+.++||.||-+-=-=+++||+.++....|++ +|..++.. .-|.+|++..--....-++.-||.+.-.. ..-
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~t--iE~~~~~~---~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITT--IEIDPERA---EIARENFRKAGLDDRIEVIEGDALEVLPELANDG 117 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEE--EESSHHHH---HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEE--ecCcHHHH---HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc
Confidence 456789999997654446778888765445554 44444333 24667776543222344455677652110 001
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|.-+-.. . + -..+|.-+..+|++||-|.+-
T Consensus 118 ~~~~fD~VFiDa~K--------~---~--------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDADK--------R---N--------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEESTG--------G---G--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEEcccc--------c---c--------hhhHHHHHhhhccCCeEEEEc
Confidence 13579999887532 1 1 124566677899999988776
No 178
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=78.24 E-value=4.9 Score=36.80 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCC-hHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDS-ERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds-~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.+-+++|+||+||=-+-+-.++| .+-.||.--..|. -.++-.+|-.+..+ .-..-.+.++.| |.-.+-+. .+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~~~~v~l~iG-DG~~fl~~--~~ 192 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLAC--GYEGKKVKLLIG-DGFLFLED--LK 192 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhc--ccCCCceEEEec-cHHHHHHH--hc
Confidence 356789999999998888777777 4445666666663 34555555221110 022224677777 87765442 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
.++||.||-.=--.= .-+.......||.....-|+++|.+..- . -+.|=...++++
T Consensus 193 ~~~~dVii~dssdpv------------gpa~~lf~~~~~~~v~~aLk~dgv~~~q-~----ec~wl~~~~i~e 248 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPV------------GPACALFQKPYFGLVLDALKGDGVVCTQ-G----ECMWLHLDYIKE 248 (337)
T ss_pred cCCceEEEEecCCcc------------chHHHHHHHHHHHHHHHhhCCCcEEEEe-c----ceehHHHHHHHH
Confidence 788999997533221 1234567889999999999998876443 1 367766665554
No 179
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=77.00 E-value=45 Score=28.34 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=72.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++++-||.|-=|-+.-.+ ..++. .-++.+|..++.. ...+.|.+.+.-.++.|+-+ ||-+. +..
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p~--~~v~AIe~~~~a~---~~~~~N~~~fg~~n~~vv~g-~Ap~~-----L~~ 99 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGPS--GRVIAIERDEEAL---ELIERNAARFGVDNLEVVEG-DAPEA-----LPD 99 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCCC--ceEEEEecCHHHH---HHHHHHHHHhCCCcEEEEec-cchHh-----hcC
Confidence 4567899999999888887777 34443 4444555444332 13667888887445555554 55443 222
Q ss_pred C-cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 96 M-KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 96 ~-~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
. .||+|. +|+..+ +..-++.|...|+++|+|.++-.+=+ +.-.+.+.-++.|+
T Consensus 100 ~~~~daiF-----IGGg~~---------------i~~ile~~~~~l~~ggrlV~naitlE--~~~~a~~~~~~~g~ 153 (187)
T COG2242 100 LPSPDAIF-----IGGGGN---------------IEEILEAAWERLKPGGRLVANAITLE--TLAKALEALEQLGG 153 (187)
T ss_pred CCCCCEEE-----ECCCCC---------------HHHHHHHHHHHcCcCCeEEEEeecHH--HHHHHHHHHHHcCC
Confidence 2 689985 555311 23345668889999999988744322 33344444455566
No 180
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=76.89 E-value=3.4 Score=31.25 Aligned_cols=50 Identities=32% Similarity=0.486 Sum_probs=34.1
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
++||.||=|.|=..... .++.... ......|-.-|++-|.+|| +|.+ .|+
T Consensus 1 mkFD~VIGNPPY~~~~~-~~~~~~~-~~~~~dlY~~Fie~~~~ll--~G~~~~I~ 51 (106)
T PF07669_consen 1 MKFDVVIGNPPYIKIKS-LSKKKKK-KKKKSDLYILFIEKSLNLL--NGYLSFIT 51 (106)
T ss_pred CCcCEEEECCCChhhcc-ccchhhc-ccccCcHHHHHHHHHHHHh--CCeEEEEe
Confidence 47999999999986542 1111110 1124567788999999998 8888 776
No 181
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=76.11 E-value=7.3 Score=36.78 Aligned_cols=88 Identities=14% Similarity=0.306 Sum_probs=55.3
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhc-----CccHHHHHHHHHhCCCE-EEEccccccCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAFGSATNMVASSLDSERTLKTK-----HWTSQAHLQSLWSRGCL-VLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~k-----Y~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~ 89 (214)
.-.+++|++| -+.++.+.++|+.++.+.++++++++.+.. ..+ +-+.+.-.+.+++.|.. ..+..|+++-+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~-~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGT-EKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchh-hhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 5568899999 556777766888886567889998875332 111 11333444556666764 568899997544
Q ss_pred CCC----C--CCCcccEEEEcC
Q 041136 90 HPT----L--SQMKFDVIIFNF 105 (214)
Q Consensus 90 ~~~----~--~~~~FD~IiFNF 105 (214)
... + .-.+.|.+|.|-
T Consensus 118 v~~lie~I~e~~G~IDiLVnSa 139 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSL 139 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECC
Confidence 211 1 124689999874
No 182
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.38 E-value=3.2 Score=38.96 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=45.8
Q ss_pred CCCCCCeEEEEecCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+-.++++.++||++..++ ..|.+.+|-.+..++|.+.+.+... +-++.|. .++.|..+-|...+.+.
T Consensus 286 ~~l~Gkrvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~-------~~~~~l~-~~~~v~~~~D~~~l~~~-- 355 (427)
T PRK02842 286 ELLRGKRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLA-------AELALLP-DGVRIVEGQDVERQLDR-- 355 (427)
T ss_pred hhcCCcEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHH-------HHHHhcc-CCCEEEECCCHHHHHHH--
Confidence 4557889999999986665 3333435543344555555544322 1233442 26777777777665542
Q ss_pred CCCCcccEEEEc
Q 041136 93 LSQMKFDVIIFN 104 (214)
Q Consensus 93 ~~~~~FD~IiFN 104 (214)
++..+.|.||=|
T Consensus 356 i~~~~pDllig~ 367 (427)
T PRK02842 356 IRALRPDLVVCG 367 (427)
T ss_pred HHHcCCCEEEcc
Confidence 444556666666
No 183
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=75.37 E-value=2.5 Score=37.34 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCcccEEEEcCCCCCCCCCCCc--ccH---H--HHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC---cccHhhH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSE--QDT---N--LIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN---QWNVMGL 164 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~--~~~---~--~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~---~W~i~~l 164 (214)
...||.||-|.|.......... .+. . .-+.+.++ .|+.-+-..|+++|++-+.+-++--+. .-.+.+.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ 200 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEY--AFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKY 200 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHH--HHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhh--hhHHHHHhhcccccceeEEecchhhhccchHHHHHHH
Confidence 5789999999999865110000 000 0 00113333 388999999999999855544332111 2334432
Q ss_pred HHhcCCEEEEEecCCCCCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPg 185 (214)
-.+. ..+...+.+....|++
T Consensus 201 ll~~-~~i~aVI~Lp~~~F~~ 220 (311)
T PF02384_consen 201 LLEN-GYIEAVISLPSNLFKP 220 (311)
T ss_dssp HHHH-EEEEEEEE--TTSSSS
T ss_pred HHhh-chhhEEeecccceecc
Confidence 2222 3355556666666766
No 184
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=75.16 E-value=20 Score=32.87 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.+++||++|+-+=.|..+|+. ..+.+..+-|+.. ..+. ..|..+.|++++.... .
T Consensus 18 ~~~~~~l~~~~~~d~~~~~l~~---~~~~~~~~~~~~~--------------~~~~~~~~~~~~f~~~~~~~~------~ 74 (342)
T PRK09489 18 FEQRRVLFAGDLQDDLPAQLDA---ASVRVHTQQFHHW--------------QVLSRQMGDNARFSLVATAED------V 74 (342)
T ss_pred hCCCcEEEEcCcchhhHHhhhc---cceEEehhhhHHH--------------HHHHhhcCCceEeccccCCcc------C
Confidence 3567899999877777776751 1122332223322 1222 2466788998777531 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.||.=.|- ++.++..-+..+...|.+||+|.|.=
T Consensus 75 ~~~d~~~~~~pk-----------------~k~~~~~~l~~~~~~l~~g~~i~~~G 112 (342)
T PRK09489 75 ADCDTLIYYWPK-----------------NKQEAQFQLMNLLSLLPVGTDIFVVG 112 (342)
T ss_pred CCCCEEEEECCC-----------------CHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 469999998874 23455555667888899999998873
No 185
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=74.92 E-value=19 Score=31.21 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=48.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++++||.||=|.=.++..|++.. ..++| +|..+.+.+ .+.+++.. ..++.+ ..-|+.++. +
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~--vEid~~~~~---~l~~~~~~--~~~v~i-i~~D~~~~~----~-- 89 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA---KKVYA--IELDPRLAE---FLRDDEIA--AGNVEI-IEGDALKVD----L-- 89 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC---CEEEE--EECCHHHHH---HHHHHhcc--CCCEEE-EEeccccCC----c--
Confidence 4567899999988877888888872 35555 554444432 24444433 123444 455776653 2
Q ss_pred CcccEEEEcCCCCC
Q 041136 96 MKFDVIIFNFPHAG 109 (214)
Q Consensus 96 ~~FD~IiFNFPH~G 109 (214)
..||.||.|.|..-
T Consensus 90 ~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 PEFNKVVSNLPYQI 103 (258)
T ss_pred hhceEEEEcCCccc
Confidence 24799999999853
No 186
>PRK06701 short chain dehydrogenase; Provisional
Probab=74.41 E-value=44 Score=29.08 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||++| .|..-.+ |++.+. .+..|+.++.+..+.+. ...+.++..|.. ..+.+|+++.+....+ .
T Consensus 46 ~k~iLItGasggIG~~--la~~l~~~G~~V~l~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 46 GKVALITGGDSGIGRA--VAVLFAKEGADIAIVYLDEHEDAN-------ETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCEEEEeCCCcHHHHH--HHHHHHHCCCEEEEEeCCcchHHH-------HHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 47899999 4444333 444432 24577777766533221 223445555653 4678888875542111 1
Q ss_pred -----CCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 95 -----QMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
...+|.||.|=-.........+... ..+..|-.-.....+.+...++++|.| +++
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1368988877422111111222211 122333333344444555555666775 444
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.21 E-value=20 Score=31.40 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=69.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH---------hCCCEEEEcccccc
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW---------SRGCLVLHGVNVHT 86 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~---------~~g~~Vl~~VDAt~ 86 (214)
..++.+.|-||-|-==.+.+.++..+. .-..+-+.|..++|.+ .+++||+.-- +.|-..++-=|+.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~-~g~~~~GIEh~~eLVe---~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA-TGGNVHGIEHIPELVE---YSKKNLDKDITTSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC-CCccccchhhhHHHHH---HHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence 567888999997765566667777653 3455588999999884 5777776543 12333333446665
Q ss_pred CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 87 MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 87 L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
... ...+||+| |+|... + ...++|| ..|+++|++.|-+-+
T Consensus 156 g~~----e~a~YDaI-----hvGAaa--~-------~~pq~l~--------dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 156 GYA----EQAPYDAI-----HVGAAA--S-------ELPQELL--------DQLKPGGRLLIPVGQ 195 (237)
T ss_pred cCC----ccCCcceE-----EEccCc--c-------ccHHHHH--------HhhccCCeEEEeecc
Confidence 543 35789999 777632 1 2356665 357899999887653
No 188
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=72.53 E-value=1.2 Score=32.81 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=35.2
Q ss_pred EEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCCCccc
Q 041136 23 LLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 23 LlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
|.|| -|..+.. |++.+........+++|..+. ++...++++.....+ ++++.+--...+.+ +...+||
T Consensus 1 lEiG~~~G~st~~--l~~~~~~~~~~~~~~vD~~~~----~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~---~~~~~~d 71 (106)
T PF13578_consen 1 LEIGTYSGYSTLW--LASALRDNGRGKLYSVDPFPG----DEQAQEIIKKAGLSDRVEFIQGDSPDFLPS---LPDGPID 71 (106)
T ss_dssp ----------------------------EEEESS----------------GGG-BTEEEEES-THHHHHH---HHH--EE
T ss_pred Ccccccccccccc--ccccccccccCCEEEEECCCc----ccccchhhhhcCCCCeEEEEEcCcHHHHHH---cCCCCEE
Confidence 4566 6666555 444333222235566776554 234555555544333 44444433222322 3357899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.|+.+=+|.. +-....|+.+.+.|+++|-|.+
T Consensus 72 li~iDg~H~~-----------------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 72 LIFIDGDHSY-----------------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEEES---H-----------------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCCCCH-----------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 9999998854 2345567788899999987754
No 189
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.22 E-value=30 Score=29.05 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=59.3
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.| .|. ...++|+.+. .+.+++..+..+.... ....+.++.|+..++. ..+.+|+++.+.-..+
T Consensus 8 ~k~vlItGa~~g--IG~~~a~~l~~~G~~vv~i~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 8 GKVVLIAGGAKN--LGGLIARDLAAQGAKAVAIHYNSAASK----ADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred CcEEEEECCCch--HHHHHHHHHHHCCCcEEEEecCCccch----HHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 47899999 444 3444665542 2345555544332111 1233445666665654 4578899876542111
Q ss_pred ----CCCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 ----SQMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ----~~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+.|.||.|= -........+... ..+..|-.-...+.+.+...+.++|.|.+.
T Consensus 82 ~~~~~~~~id~li~~a-g~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 82 DAKAAFGRPDIAINTV-GKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HHHHhhCCCCEEEECC-cccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 124689888653 2211111111111 112223222233445555666677776544
No 190
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=72.10 E-value=65 Score=27.89 Aligned_cols=134 Identities=17% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCeEEEEecCchhHHHHHHHH-hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc-ccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARA-FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV-NVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~-~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V-DAt~L~~~~~~~~~ 96 (214)
..+||=+|-||=++=.-|++. +.+ .|+.+-| |++.+. -+.||.+=+...-.|-|.+ |.++ +.+...
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~--~L~GvDY-s~~AV~-----LA~niAe~~~~~n~I~f~q~DI~~----~~~~~~ 135 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQS--KLTGVDY-SEKAVE-----LAQNIAERDGFSNEIRFQQLDITD----PDFLSG 135 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCC--Ccccccc-CHHHHH-----HHHHHHHhcCCCcceeEEEeeccC----Cccccc
Confidence 349999999999888888875 432 2444433 333332 2456766655444355544 4554 245667
Q ss_pred cccEEEEcCCCCCCCCC--CCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPP--LSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~--~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
+||.|.=- |.-.. .+-.+ .+-.| .-+..+...+|+++|.+.||-|+ ...=.+++.-...||....
T Consensus 136 qfdlvlDK----GT~DAisLs~d~-----~~~r~-~~Y~d~v~~ll~~~gifvItSCN---~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 136 QFDLVLDK----GTLDAISLSPDG-----PVGRL-VVYLDSVEKLLSPGGIFVITSCN---FTKDELVEEFENFNFEYLS 202 (227)
T ss_pred ceeEEeec----CceeeeecCCCC-----cccce-eeehhhHhhccCCCcEEEEEecC---ccHHHHHHHHhcCCeEEEE
Confidence 78877411 21100 00000 01111 55677889999999999999554 1222233444455777766
Q ss_pred Eec
Q 041136 175 KVE 177 (214)
Q Consensus 175 ~~~ 177 (214)
.+|
T Consensus 203 tvp 205 (227)
T KOG1271|consen 203 TVP 205 (227)
T ss_pred eec
Confidence 544
No 191
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=70.64 E-value=21 Score=32.46 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=56.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~~ 94 (214)
-+++.+||.-|.|.=|+|.||++..++...|+.--+ .++ -++.++++.++.|+--...|-..++... ...+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfef--H~~------Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEF--HET------RAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEe--cHH------HHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 467889999999999999999999987777775544 222 3667889999877322211211222221 1234
Q ss_pred CCcccEEEEcCCC
Q 041136 95 QMKFDVIIFNFPH 107 (214)
Q Consensus 95 ~~~FD~IiFNFPH 107 (214)
...+|.|.-+-|-
T Consensus 175 s~~aDaVFLDlPa 187 (314)
T KOG2915|consen 175 SLKADAVFLDLPA 187 (314)
T ss_pred ccccceEEEcCCC
Confidence 6788999888764
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=69.69 E-value=26 Score=31.43 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=49.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~ 93 (214)
...++++||.||=|-=+++..|++.- ..++|.-.|. .+. +.+.+++...... ++.++ .-|+.++. +
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~--~li---~~l~~~~~~~~~~~~v~ii-~~Dal~~~----~ 99 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDP--RMV---AELKKRFQNSPLASKLEVI-EGDALKTE----F 99 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCH--HHH---HHHHHHHHhcCCCCcEEEE-ECCHhhhc----c
Confidence 44678899999966555566677652 3566655553 333 2345555443212 34444 44887653 2
Q ss_pred CCCcccEEEEcCCCCCC
Q 041136 94 SQMKFDVIIFNFPHAGH 110 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~ 110 (214)
..||.||.|.|-...
T Consensus 100 --~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 100 --PYFDVCVANVPYQIS 114 (294)
T ss_pred --cccCEEEecCCcccC
Confidence 358999999998754
No 193
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=69.31 E-value=71 Score=27.19 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=57.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-H--------hCCCEEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-W--------SRGCLVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~--------~~g~~Vl~~VDAt~L 87 (214)
.+..+||.+|.|.=--++.||.+ +.+ +|+.|--++-.++. -.+.++... . ...-.-++.-|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---G~~--V~avD~s~~Ai~~~-~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---GHE--VLGVELSELAVEQF-FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---CCe--EEEEccCHHHHHHH-HHHcCCCccccccccccccccCceEEEECcccCC
Confidence 45679999998877788888863 334 45566433322211 000011000 0 001112233444444
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEec
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLR 151 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~ 151 (214)
... ....||.|+= .+ ..+..+.++-..+++....+|+|||.+ .+|+.
T Consensus 110 ~~~---~~~~fd~v~D----~~----------~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~ 157 (218)
T PRK13255 110 TAA---DLADVDAVYD----RA----------ALIALPEEMRERYVQQLAALLPAGCRGLLVTLD 157 (218)
T ss_pred Ccc---cCCCeeEEEe----hH----------hHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 321 1124555541 00 012234567788899999999999974 55664
No 194
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=69.24 E-value=22 Score=30.19 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=67.4
Q ss_pred cccC-CCCCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 12 WISH-YTNNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 12 ~~~~-~~~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
|+.| |=.+.++| .-|-|-+.+= ||.+ | + --||-.|...... .-..+|++.|...+-..++..||+..-
T Consensus 36 il~~~~i~g~~~LDlFAGSGaLGlE-AlSR--G-A--~~~~~vE~~~~a~---~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 36 ILAPDEIEGARVLDLFAGSGALGLE-ALSR--G-A--ARVVFVEKDRKAV---KILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred hccccccCCCEEEEecCCccHhHHH-HHhC--C-C--ceEEEEecCHHHH---HHHHHHHHHhCCccceEEEeecHHHHH
Confidence 5667 57788875 4466655442 1211 1 2 3345555444333 247789999997777777778888432
Q ss_pred CCCCCC-CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 89 RHPTLS-QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 89 ~~~~~~-~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+. +. ...||.|..+.|-.-. .+.....++. .-...+|+++|.|.+-.-.
T Consensus 107 ~~--~~~~~~FDlVflDPPy~~~----------l~~~~~~~~~---~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 107 KQ--LGTREPFDLVFLDPPYAKG----------LLDKELALLL---LEENGWLKPGALIVVEHDK 156 (187)
T ss_pred Hh--cCCCCcccEEEeCCCCccc----------hhhHHHHHHH---HHhcCCcCCCcEEEEEeCC
Confidence 21 22 2369999999998721 1111122211 0134568999999887543
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=69.01 E-value=18 Score=31.20 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=48.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+.++||.+|=|.=+++..|++... .++| +|..+.+.+ .+.+++.. .+-..++.-|+.++...
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~--iE~d~~~~~---~l~~~~~~---~~~v~v~~~D~~~~~~~---- 90 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTA--IEIDPRLAE---ILRKLLSL---YERLEVIEGDALKVDLP---- 90 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEE--EECCHHHHH---HHHHHhCc---CCcEEEEECchhcCChh----
Confidence 345678999999777778888988752 4555 454444442 23333322 23344567788776431
Q ss_pred CCccc---EEEEcCCCC
Q 041136 95 QMKFD---VIIFNFPHA 108 (214)
Q Consensus 95 ~~~FD---~IiFNFPH~ 108 (214)
.|| .||-|-|..
T Consensus 91 --~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 --DFPKQLKVVSNLPYN 105 (253)
T ss_pred --HcCCcceEEEcCChh
Confidence 356 999999953
No 196
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=68.96 E-value=9.6 Score=33.16 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=47.2
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccH
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNV 161 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i 161 (214)
|=|.++.+. .+.....|.+||-.--.|. | +.+|++-|..+|+++|.+.|.=...---+.=..
T Consensus 108 Vtacdia~v-PL~~~svDv~VfcLSLMGT---------n--------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F 169 (219)
T PF05148_consen 108 VTACDIANV-PLEDESVDVAVFCLSLMGT---------N--------WPDFIREANRVLKPGGILKIAEVKSRFENVKQF 169 (219)
T ss_dssp EEES-TTS--S--TT-EEEEEEES---SS------------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred EEEecCccC-cCCCCceeEEEEEhhhhCC---------C--------cHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence 334555443 4678889999999988886 2 568999999999999999988333222233334
Q ss_pred hhHHHhcCCEEEEE
Q 041136 162 MGLADKLGLVLKEK 175 (214)
Q Consensus 162 ~~lA~~~gl~l~~~ 175 (214)
.+.-+..|+.+..+
T Consensus 170 ~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 170 IKALKKLGFKLKSK 183 (219)
T ss_dssp HHHHHCTTEEEEEE
T ss_pred HHHHHHCCCeEEec
Confidence 45666779998874
No 197
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=68.70 E-value=14 Score=30.11 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++||++|+=+=.|...|.+. +..+.+.+++-.. ...++ ..++.+.|+++... ..
T Consensus 12 ~~k~vL~~g~~~D~~~~~L~~~---~~~v~~~~~~~~~------------~~~~~~~~~~~~~f~~~~~~--------~~ 68 (155)
T PF08468_consen 12 EGKSVLFAGDPQDDLPAQLPAI---AVSVHVFSYHHWY------------ALQKQAQSNVQFHFGAELPA--------DQ 68 (155)
T ss_dssp TT-EEEEEE---SSHHHHS--S---EEEEEESBHHHHH------------HHHHHHGGGEEE-SS--HHH--------HT
T ss_pred CCCeEEEEcCCchhhHHHhhhc---CCEEEEEEchHHH------------HHhHhcccCceEeeeccCCc--------cc
Confidence 4678999994444455445532 1234444421110 11111 23567777766553 24
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.||+-.|= +++++.--+..+...|.+||+|+|.
T Consensus 69 ~~D~vvly~PK-----------------aK~e~~~lL~~l~~~L~~g~~i~vV 104 (155)
T PF08468_consen 69 DFDTVVLYWPK-----------------AKAEAQYLLANLLSHLPPGTEIFVV 104 (155)
T ss_dssp T-SEEEEE--S-----------------SHHHHHHHHHHHHTTS-TT-EEEEE
T ss_pred CCCEEEEEccC-----------------cHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 59999999984 3556666677888999999999887
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=68.70 E-value=26 Score=35.18 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=35.8
Q ss_pred EEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCC
Q 041136 47 VASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 47 ~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G 109 (214)
..++.|..++.. ..|..|+....-.+...+..-|++++... .....||.||.|.|.--
T Consensus 258 ~i~G~Did~~av---~~A~~N~~~~g~~~~i~~~~~D~~~~~~~--~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 258 KFYGSDIDPRVI---QAARKNARRAGVAELITFEVKDVADLKNP--LPKGPTGLVISNPPYGE 315 (702)
T ss_pred eEEEEECCHHHH---HHHHHHHHHcCCCcceEEEeCChhhcccc--cccCCCCEEEECCCCcC
Confidence 355666544444 25778887653323234556688887532 22356999999999853
No 199
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=68.50 E-value=4.9 Score=37.50 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=48.5
Q ss_pred CCCCCCeEEEEecCchhHHHH--HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDC--LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~s--La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+-.++|+.++||++..++++ |.+ +|-..-.++|.+.+.+... +-++.|.. ++.|+.+-|...|++.
T Consensus 270 ~~l~Gkrv~i~gd~~~~~~l~~~L~e-lGm~~v~~~t~~~~~~~~~-------~~~~~l~~-~~~v~~~~d~~~l~~~-- 338 (407)
T TIGR01279 270 QLLRGKKIFFFGDNLLELPLARFLKR-CGMEVVECGTPYIHRRFHA-------AELALLEG-GVRIVEQPDFHRQLQR-- 338 (407)
T ss_pred HhcCCCEEEEECCchHHHHHHHHHHH-CCCEEEEecCCCCChHHHH-------HHHhhcCC-CCeEEeCCCHHHHHHH--
Confidence 345799999999999888633 333 5533334444455443321 12333332 5778888777776652
Q ss_pred CCCCcccEEEE----cCCCC
Q 041136 93 LSQMKFDVIIF----NFPHA 108 (214)
Q Consensus 93 ~~~~~FD~IiF----NFPH~ 108 (214)
++..+.|.||= +-|.+
T Consensus 339 i~~~~pDllig~~~~~~pl~ 358 (407)
T TIGR01279 339 IRATRPDLVVTGLGTANPLE 358 (407)
T ss_pred HHhcCCCEEecCccCCCcHh
Confidence 45556677766 45554
No 200
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=67.88 E-value=6.7 Score=34.10 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cC
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RD 152 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~ 152 (214)
++.-.|.+-..+.. ....++|.|.-+.= +|- +.-+=|-.||+.|+.-|+|+|-|.|-= +.
T Consensus 104 ~v~~~~~~gLQ~f~----P~~~~YDlIW~QW~-lgh-------------LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 104 RVGEFYCVGLQDFT----PEEGKYDLIWIQWC-LGH-------------LTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp CEEEEEES-GGG--------TT-EEEEEEES--GGG-------------S-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred CcceEEecCHhhcc----CCCCcEeEEEehHh-hcc-------------CCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 34555555443321 22458998876642 332 233456789999999999999887752 11
Q ss_pred -CC-CCC----c-----ccHhhHHHhcCCEEEEEe---cCCCCCCCCCc
Q 041136 153 -DH-PYN----Q-----WNVMGLADKLGLVLKEKV---EFLKQDFPGYH 187 (214)
Q Consensus 153 -~~-Py~----~-----W~i~~lA~~~gl~l~~~~---~F~~~~yPgY~ 187 (214)
+. -|+ + =.+..+.+++||.+.+.. -|..+.||-|.
T Consensus 166 ~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~pV~m 214 (218)
T PF05891_consen 166 SGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYPVRM 214 (218)
T ss_dssp SSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-EEEE
T ss_pred CCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceEEEE
Confidence 11 111 1 126789999999998754 67777787653
No 201
>PRK07985 oxidoreductase; Provisional
Probab=67.63 E-value=81 Score=27.43 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.| -|..-.+ +|+.+. .+.+|++++.+...+- .++-.+.++..|.. ..+.+|+++.+.-..+
T Consensus 49 ~k~vlITGas~gIG~a--ia~~L~~~G~~Vi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 49 DRKALVTGGDSGIGRA--AAIAYAREGADVAISYLPVEEED------AQDVKKIIEECGRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCEEEEECCCCcHHHH--HHHHHHHCCCEEEEecCCcchhh------HHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 46899999 4444433 544432 2467888765432211 11112233444543 3577888875431110
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
.-...|.+|.|--
T Consensus 121 ~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 121 EAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1246899998853
No 202
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=67.58 E-value=8.9 Score=34.83 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=43.2
Q ss_pred CCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEEccccccCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 19 ~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.-++|=||.|-=.- .+--++.+ +.+.+||-.|...- ..|.+||+....+ -+.|...=+...+-.--....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl-----~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSL-----ESARENVERNPNLESRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHH-----HHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHH-----HHHHHHHHhccccccceEEEEcCCccccchhhhccc
Confidence 56789999997544 33234556 47999999997542 2588999887332 345555444444432111234
Q ss_pred CcccEEEEcCCCCCCC
Q 041136 96 MKFDVIIFNFPHAGHS 111 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~ 111 (214)
+.||..+-|.|+....
T Consensus 176 e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp S-EEEEEE-----SS-
T ss_pred ceeeEEecCCccccCh
Confidence 6899999999999764
No 203
>PRK05599 hypothetical protein; Provisional
Probab=67.35 E-value=14 Score=31.20 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=45.4
Q ss_pred eEEEEe-cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEccccccCCCCCCC----
Q 041136 21 RILLVG-EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNVHTMDRHPTL---- 93 (214)
Q Consensus 21 ~ILlVG-eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDAt~L~~~~~~---- 93 (214)
.+|+.| -+..-++ +|+.+..+.+|+.++.+. +. .++-.+.|++.|. ...+.+|+++.+....+
T Consensus 2 ~vlItGas~GIG~a--ia~~l~~g~~Vil~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 71 (246)
T PRK05599 2 SILILGGTSDIAGE--IATLLCHGEDVVLAARRP-EA-------AQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQT 71 (246)
T ss_pred eEEEEeCccHHHHH--HHHHHhCCCEEEEEeCCH-HH-------HHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHH
Confidence 578888 4444443 555554457888888754 22 2334555665553 45678999987653221
Q ss_pred --CCCcccEEEEcC
Q 041136 94 --SQMKFDVIIFNF 105 (214)
Q Consensus 94 --~~~~FD~IiFNF 105 (214)
...+.|.+|.|.
T Consensus 72 ~~~~g~id~lv~na 85 (246)
T PRK05599 72 QELAGEISLAVVAF 85 (246)
T ss_pred HHhcCCCCEEEEec
Confidence 125689999885
No 204
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=66.99 E-value=21 Score=27.53 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=48.4
Q ss_pred CeEEEEe-cCchh--HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 20 QRILLVG-EGDFS--FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 20 ~~ILlVG-eGnFS--FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
+.+|++| .+..= .+..|+++ .+..|+.++.+... +...+.++.|+..|. ......|+++.+....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~------~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR--GARVVILTSRSEDS------EGAQELIQELKAPGAKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHH------HHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccc------ccccccccccccccccccccccccccccccccccc
Confidence 3678888 55543 33334443 24477888777111 234445677776665 34455888865542111
Q ss_pred ----CCCcccEEEEcCCCCC
Q 041136 94 ----SQMKFDVIIFNFPHAG 109 (214)
Q Consensus 94 ----~~~~FD~IiFNFPH~G 109 (214)
....+|.+|.|-....
T Consensus 73 ~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 73 EVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp HHHHHHSSESEEEEECSCTT
T ss_pred cccccccccccccccccccc
Confidence 2467999999987776
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=66.82 E-value=8.5 Score=34.80 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=24.8
Q ss_pred HHHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 121 LIKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 121 ~i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
+|.-|.+| |..++.+|..+|++||++ .||
T Consensus 205 RI~VN~El~~L~~~L~~~~~~L~~gGrl~vis 236 (296)
T PRK00050 205 RIEVNDELEELERALEAALDLLKPGGRLAVIS 236 (296)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 35568888 999999999999999998 555
No 206
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=66.19 E-value=37 Score=31.99 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred EeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHH
Q 041136 48 ASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKN 127 (214)
Q Consensus 48 ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~ 127 (214)
.-+.|....+.+ .|..|.+..--.+...+...|+++|++. + ..+|.||+|.|- |-..+.. .....
T Consensus 257 ~~G~Did~r~i~---~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--~--~~~gvvI~NPPY-GeRlg~~-------~~v~~ 321 (381)
T COG0116 257 IYGSDIDPRHIE---GAKANARAAGVGDLIEFKQADATDLKEP--L--EEYGVVISNPPY-GERLGSE-------ALVAK 321 (381)
T ss_pred EEEecCCHHHHH---HHHHHHHhcCCCceEEEEEcchhhCCCC--C--CcCCEEEeCCCc-chhcCCh-------hhHHH
Confidence 335565555542 5777877766566678888999999874 3 679999999995 4321110 22355
Q ss_pred HHHHHHHHHHhccCCCCEEEEE
Q 041136 128 LLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 128 LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|=..|.+.+++++.-.+...+|
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEE
Confidence 7788999999999888776666
No 207
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=65.07 E-value=35 Score=28.89 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=57.8
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+.-+..++|-+|.|.=-=|+-||+. ..-+|+.|..+.-. +.++.+ ++.++.|- +...+|... .
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~-----G~~VtAvD~s~~al-------~~l~~~a~~~~l~i~--~~~~Dl~~~-~ 90 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ-----GFDVTAVDISPVAL-------EKLQRLAEEEGLDIR--TRVADLNDF-D 90 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT-----T-EEEEEESSHHHH-------HHHHHHHHHTT-TEE--EEE-BGCCB-S
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC-----CCeEEEEECCHHHH-------HHHHHHHhhcCceeE--EEEecchhc-c
Confidence 34556789999997766556557764 35677788654332 233333 22444421 122333332 2
Q ss_pred CCCCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE-Ee
Q 041136 93 LSQMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV-TL 150 (214)
Q Consensus 93 ~~~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V-Tl 150 (214)
+. ..||.|+.- |.|+ +++++...+++-..-+++||.+.+ +.
T Consensus 91 ~~-~~yD~I~st~v~~fL----------------~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 FP-EEYDFIVSTVVFMFL----------------QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -T-TTEEEEEEESSGGGS-----------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cc-CCcCEEEEEEEeccC----------------CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 32 569999742 2222 344667778888889999999644 44
No 208
>PRK12746 short chain dehydrogenase; Provisional
Probab=63.51 E-value=82 Score=26.10 Aligned_cols=119 Identities=12% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEe-ecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVAS-SLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~AT-s~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
+++||+.| -|..-.+ |++.+. .+..+++. +.+ .+. ..+.++.+...+. ...+.+|.++.+....+
T Consensus 6 ~~~ilItGasg~iG~~--la~~l~~~G~~v~i~~~r~-~~~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~ 75 (254)
T PRK12746 6 GKVALVTGASRGIGRA--IAMRLANDGALVAIHYGRN-KQA-------ADETIREIESNGGKAFLIEADLNSIDGVKKLV 75 (254)
T ss_pred CCEEEEeCCCchHHHH--HHHHHHHCCCEEEEEcCCC-HHH-------HHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHH
Confidence 46899999 4444443 555432 23455553 333 222 2233445554443 44677898876542111
Q ss_pred -----------CCCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 -----------SQMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 -----------~~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.....|.||.| +-........+... ..+..|-.-...+.+.+.+.+...|.+..
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~-ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~ 144 (254)
T PRK12746 76 EQLKNELQIRVGTSEIDILVNN-AGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVIN 144 (254)
T ss_pred HHHHHHhccccCCCCccEEEEC-CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 11357877655 44322212222211 11233433344444555555566676533
No 209
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.27 E-value=7.5 Score=33.75 Aligned_cols=86 Identities=23% Similarity=0.473 Sum_probs=45.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCC-----------CCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGS-----------ATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVH 85 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~-----------~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt 85 (214)
.++++|+| |.|.. .+|...++. ..||.+-..|.++.+. .| -..+++.+... +...+-++...
T Consensus 27 ~g~~vLlv-d~D~~--~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 100 (254)
T cd00550 27 QGKKVLLV-STDPA--HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALE-EY--RQEVLEPIEANLLLEMLKGILEE 100 (254)
T ss_pred CCCCceEE-eCCCc--ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHH-HH--HHHHHHHHHhhccchhHHHHHHH
Confidence 46788888 45553 345554432 2467777777766554 33 23355555432 11222122222
Q ss_pred cCCCCCC-------------CCCCcccEEEEcCCCCCC
Q 041136 86 TMDRHPT-------------LSQMKFDVIIFNFPHAGH 110 (214)
Q Consensus 86 ~L~~~~~-------------~~~~~FD~IiFNFPH~G~ 110 (214)
.+.. |. +....||+||++-|-+|.
T Consensus 101 ~~~~-Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~ 137 (254)
T cd00550 101 ELES-PGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGH 137 (254)
T ss_pred HhcC-CCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHH
Confidence 1111 11 234579999999999874
No 210
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=63.13 E-value=38 Score=31.82 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCEEEEccccccCCCCC-----CCCCCcccEEEEcCCCCCCCCCCCcccHHH---H--H-Hh-HHHHHHHHHHHHhccCC
Q 041136 75 GCLVLHGVNVHTMDRHP-----TLSQMKFDVIIFNFPHAGHSPPLSEQDTNL---I--K-RH-KNLLEAFLKNGREMLGE 142 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~-----~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~---i--~-~n-~~LL~~Ff~Sa~~lL~~ 142 (214)
.....-++|++...+.- ......||+|.-+=|+.|-+.-.++.+.-. + + .+ ..|=-..+.++-.+|++
T Consensus 209 ~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~ 288 (375)
T KOG2198|consen 209 PNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKV 288 (375)
T ss_pred cceeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcC
Confidence 35566677777665531 234578999999999998754334433210 0 0 00 13445678889999999
Q ss_pred CCEEEEEecCCCCCCcccHhh
Q 041136 143 GGEVHVTLRDDHPYNQWNVMG 163 (214)
Q Consensus 143 ~G~i~VTl~~~~Py~~W~i~~ 163 (214)
||.+.-+-|...|-..=-++.
T Consensus 289 GG~lVYSTCSLnpieNEaVV~ 309 (375)
T KOG2198|consen 289 GGRLVYSTCSLNPIENEAVVQ 309 (375)
T ss_pred CCEEEEeccCCCchhhHHHHH
Confidence 999999999999855444444
No 211
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.76 E-value=72 Score=26.14 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.| .|..-.+ ||+.+. .+.+++.+...+... ..+.++.+...+. ...+.+|.++.+....+ .
T Consensus 5 ~~~vlItG~~~~iG~~--la~~l~~~g~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 5 NKVAIVTGASRGIGAA--IARRLAADGFAVAVNYAGSAAA-------ADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCEEEEeCCCchHHHH--HHHHHHHCCCEEEEecCCCHHH-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 56889998 5665544 555432 234677766554332 2233455555554 44567888875542111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
-...|.||.|-
T Consensus 76 ~~~~~~~~id~vi~~a 91 (245)
T PRK12937 76 AAETAFGRIDVLVNNA 91 (245)
T ss_pred HHHHHcCCCCEEEECC
Confidence 13579888774
No 212
>PRK07806 short chain dehydrogenase; Provisional
Probab=62.13 E-value=55 Score=27.06 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 19 NQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.|= |.. ..+|++.+. .+.+|++++.+..+.+ +...+.|+..+. ...+..|+++.+....+ .
T Consensus 6 ~k~vlItGasggi--G~~l~~~l~~~G~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 6 GKTALVTGSSRGI--GADTAKILAGAGAHVVVNYRQKAPRA-------NKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CcEEEEECCCCcH--HHHHHHHHHHCCCEEEEEeCCchHhH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 468999994 443 344665542 3467888876543222 222344554444 34577898876542111 1
Q ss_pred -----CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 95 -----QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
....|.||.|-...... ...... .+..|-.-....++.+.+.+..+|+| +|+
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~-~~~~~~--~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMES-GMDEDY--AMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCC-CCCcce--eeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13589998886322111 000100 01122222334456666666666775 554
No 213
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=62.08 E-value=31 Score=32.93 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=58.0
Q ss_pred CCCeEEEEe--cCchhHHH-HHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhC---CCEEEEccccccCCCC
Q 041136 18 NNQRILLVG--EGDFSFSD-CLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSR---GCLVLHGVNVHTMDRH 90 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~-sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~---g~~Vl~~VDAt~L~~~ 90 (214)
.+..||.|| -|=+|... .-+...+.+..|+|---.. .|...++.+ +.. +...+..-|+++++-
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~---------~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP---------NAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST---------HHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH---------hHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 567899999 78888543 2334455567788865433 333333333 322 344555567777653
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
..+.|.||.=- .|.. + ..+|+...+..+.+.|+++|.+
T Consensus 256 ----pekvDIIVSEl--LGsf-g-----------~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 256 ----PEKVDIIVSEL--LGSF-G-----------DNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp ----SS-EEEEEE-----BTT-B-----------TTTSHHHHHHHGGGGEEEEEEE
T ss_pred ----CCceeEEEEec--cCCc-c-----------ccccCHHHHHHHHhhcCCCCEE
Confidence 34899999753 3432 1 1236666788899999998763
No 214
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=61.90 E-value=6.6 Score=35.89 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.5
Q ss_pred HHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 122 IKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 122 i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
|.-|++| |..++.+|..+|+++|++ .||
T Consensus 214 I~VNdEL~~L~~~L~~a~~~L~~gGRl~VIs 244 (314)
T COG0275 214 IYVNDELEELEEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred eeehhHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 5568888 999999999999999998 555
No 215
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=61.85 E-value=30 Score=30.85 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=58.8
Q ss_pred eEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCC-hHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 21 RILLVG--EGDFSFSDCLARAFGSATNMVASSLDS-ERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 21 ~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds-~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+||.|| =||-+|- |.+-.. ..+|..-+-|- ..++. --++|.+..++....-..+++-..+.. .....+
T Consensus 74 ~ilEvGCGvGNtvfP--ll~~~~-n~~l~v~acDfsp~Ai~----~vk~~~~~~e~~~~afv~Dlt~~~~~~--~~~~~s 144 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFP--LLKTSP-NNRLKVYACDFSPRAIE----LVKKSSGYDESRVEAFVWDLTSPSLKE--PPEEGS 144 (264)
T ss_pred hheeeccCCCcccch--hhhcCC-CCCeEEEEcCCChHHHH----HHHhccccchhhhcccceeccchhccC--CCCcCc
Confidence 899998 7888887 655432 33466666663 22211 112223333333333333333333332 245677
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+|.|+--|=-..-. .+=+..-+.+...||+|||.+...
T Consensus 145 vD~it~IFvLSAi~--------------pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 145 VDIITLIFVLSAIH--------------PEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred cceEEEEEEEeccC--------------hHHHHHHHHHHHHHhCCCcEEEEe
Confidence 89887777554432 222334456788999999988766
No 216
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=61.60 E-value=75 Score=28.03 Aligned_cols=99 Identities=19% Similarity=0.344 Sum_probs=54.6
Q ss_pred CCCCCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc---CCCC
Q 041136 15 HYTNNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT---MDRH 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~---L~~~ 90 (214)
....+++||+.|.|...-. ..+|+..|. ..+++++...+ .++.+++.|+...++.+... +.+
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~------------~~~~~~~~Ga~~~i~~~~~~~~~~~~- 222 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSE------------KLALAKSLGAMQTFNSREMSAPQIQS- 222 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHH------------HHHHHHHcCCceEecCcccCHHHHHH-
Confidence 3456889999999887654 445777752 23566643221 23445666775444433211 111
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
......+|.+|++ .+|.. .. +..+..+|+++|.|.+.
T Consensus 223 -~~~~~~~d~~v~d--~~G~~---------------~~----~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 223 -VLRELRFDQLILE--TAGVP---------------QT----VELAIEIAGPRAQLALV 259 (347)
T ss_pred -HhcCCCCCeEEEE--CCCCH---------------HH----HHHHHHHhhcCCEEEEE
Confidence 1233468877777 34431 11 22355778999998554
No 217
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.93 E-value=72 Score=26.53 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=43.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|..-.+ |++.+. .+.+|+.++.+.+ .+ .+..+.++..|. ...+-+|.++......+
T Consensus 10 ~~k~ilItGas~~IG~~--la~~l~~~G~~v~~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (256)
T PRK06124 10 AGQVALVTGSARGLGFE--IARALAGAGAHVLVNGRNAA-TL-------EAAVAALRAAGGAAEALAFDIADEEAVAAAF 79 (256)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHcCCeEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 477899999 4555444 554431 2457888877642 22 122444554443 44667788765431111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.++|.||.|-
T Consensus 80 ~~~~~~~~~id~vi~~a 96 (256)
T PRK06124 80 ARIDAEHGRLDILVNNV 96 (256)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 124689998884
No 218
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=60.07 E-value=54 Score=26.57 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=39.0
Q ss_pred eEEEEe-cCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCC
Q 041136 21 RILLVG-EGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDR 89 (214)
Q Consensus 21 ~ILlVG-eGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~ 89 (214)
++|+.| -|.+... .-|++.. ..+|+.++..+. .-+...+.++.|++.|+.| +..+|+++.+.
T Consensus 2 tylitGG~gglg~~la~~La~~~--~~~~il~~r~~~-----~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~ 67 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG--ARRLILLGRSGA-----PSAEAEAAIRELESAGARVEYVQCDVTDPEA 67 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGG-----GSTTHHHHHHHHHHTT-EEEEEE--TTSHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcC--CCEEEEeccCCC-----ccHHHHHHHHHHHhCCCceeeeccCccCHHH
Confidence 467887 7766554 3334433 568999988751 1245667899999999865 56799997554
No 219
>PRK06172 short chain dehydrogenase; Provisional
Probab=59.31 E-value=1e+02 Score=25.57 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
+++||++| -|..-.+ +++.+. .+.+|++++.+..+ + .+..+.++..+. ...+.+|+++......+
T Consensus 7 ~k~ilItGas~~iG~~--ia~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 7 GKVALVTGGAAGIGRA--TALAFAREGAKVVVADRDAAG-G-------EETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCEEEEeCCCchHHHH--HHHHHHHcCCEEEEEeCCHHH-H-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 57899999 5544444 555432 24578888776432 2 122334444454 45667898875432111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
...++|.||.|--
T Consensus 77 ~~~~~~g~id~li~~ag 93 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1146899998853
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=59.03 E-value=13 Score=33.80 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.9
Q ss_pred HHHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 121 LIKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 121 ~i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
+|.-|.+| |..++..|..+|++||++ .||
T Consensus 209 RI~VN~EL~~L~~~L~~~~~~L~~gGrl~VIS 240 (305)
T TIGR00006 209 RIYVNDELEELEEALQFAPNLLAPGGRLSIIS 240 (305)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 35668888 999999999999999998 555
No 221
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=58.76 E-value=15 Score=35.59 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=50.5
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.|..-..+|+++|-|.+... +++.+. .+..+++ .|..++ .++.+++.|..+++| ||++-+-...
T Consensus 412 ~~~~~~~hiiI~G~G~~G~~--la~~L~~~g~~vvv--Id~d~~----------~~~~~~~~g~~~i~G-D~~~~~~L~~ 476 (558)
T PRK10669 412 IPVDICNHALLVGYGRVGSL--LGEKLLAAGIPLVV--IETSRT----------RVDELRERGIRAVLG-NAANEEIMQL 476 (558)
T ss_pred cccccCCCEEEECCChHHHH--HHHHHHHCCCCEEE--EECCHH----------HHHHHHHCCCeEEEc-CCCCHHHHHh
Confidence 34444689999999999876 777653 2345544 444332 256667789999999 9997543222
Q ss_pred CCCCcccEEEEcCC
Q 041136 93 LSQMKFDVIIFNFP 106 (214)
Q Consensus 93 ~~~~~FD~IiFNFP 106 (214)
..-++.|.|+-.-|
T Consensus 477 a~i~~a~~viv~~~ 490 (558)
T PRK10669 477 AHLDCARWLLLTIP 490 (558)
T ss_pred cCccccCEEEEEcC
Confidence 33356787776544
No 222
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=58.09 E-value=6.1 Score=32.91 Aligned_cols=113 Identities=22% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC
Q 041136 17 TNNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~ 93 (214)
-.+.++| .-|-|.+++- ||.+ | +.. |+..|...... ....+|++.|...+ +.|+.+-....|.+. ..
T Consensus 41 ~~g~~vLDLFaGSGalGlE-ALSR--G-A~~--v~fVE~~~~a~---~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~-~~ 110 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLE-ALSR--G-AKS--VVFVEKNRKAI---KIIKKNLEKLGLEDKIRVIKGDAFKFLLKL-AK 110 (183)
T ss_dssp HTT-EEEETT-TTSHHHHH-HHHT--T--SE--EEEEES-HHHH---HHHHHHHHHHT-GGGEEEEESSHHHHHHHH-HH
T ss_pred cCCCeEEEcCCccCccHHH-HHhc--C-CCe--EEEEECCHHHH---HHHHHHHHHhCCCcceeeeccCHHHHHHhh-cc
Confidence 3455553 5588888875 3443 2 233 44555444333 24678999988655 455544333333321 11
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...+||.|..+.|-.-.. ...++|.... ...+|+++|.|.+-+...
T Consensus 111 ~~~~fDiIflDPPY~~~~------------~~~~~l~~l~--~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 KGEKFDIIFLDPPYAKGL------------YYEELLELLA--ENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp CTS-EEEEEE--STTSCH------------HHHHHHHHHH--HTTSEEEEEEEEEEEETT
T ss_pred cCCCceEEEECCCcccch------------HHHHHHHHHH--HCCCCCCCEEEEEEecCC
Confidence 468999999999986530 1234444443 258899999988886543
No 223
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.88 E-value=10 Score=35.07 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=39.6
Q ss_pred CCCCCeEEEEecCchhHH--HHHHHHhCCCCcEEEeec--CChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFS--DCLARAFGSATNMVASSL--DSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~--ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
+-.++++.++||++..++ ..|.+ +| ..+++++- .+.+.. ++-++.|. .++.|..+-|..++.+.
T Consensus 273 ~l~Gkrv~i~g~~~~~~~la~~L~e-lG--m~vv~~~t~~~~~~~~-------~~~~~~l~-~~~~v~~~~d~~~l~~~- 340 (396)
T cd01979 273 LLRGKSIFFMGDNLLEIPLARFLTR-CG--MIVVEVGTPYLDKRFQ-------AAELELLP-PMVRIVEKPDNYRQLDR- 340 (396)
T ss_pred hhcCCEEEEECCchHHHHHHHHHHH-CC--CEEEeeCCCcCChHHH-------HHHHHhcC-CCCeEEECCCHHHHHHH-
Confidence 346889999999985555 33343 54 45555443 222211 11123332 35666666666555432
Q ss_pred CCCCCcccEEEEc
Q 041136 92 TLSQMKFDVIIFN 104 (214)
Q Consensus 92 ~~~~~~FD~IiFN 104 (214)
++..+.|.||-|
T Consensus 341 -i~~~~pDlli~~ 352 (396)
T cd01979 341 -IRELRPDLVVTG 352 (396)
T ss_pred -HHhcCCCEEEec
Confidence 344456666653
No 224
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=57.66 E-value=18 Score=33.08 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCCeEEEEe---cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---------CEEEEcccc
Q 041136 18 NNQRILLVG---EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---------CLVLHGVNV 84 (214)
Q Consensus 18 ~~~~ILlVG---eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---------~~Vl~~VDA 84 (214)
+..+||=+| =|| |.|.. .....++.+=. +.+.+. +|.+..+.+++.. ....+--|+
T Consensus 62 ~~~~VLDl~CGkGGD------L~Kw~~~~i~~~vg~Di-s~~si~----ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~ 130 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD------LQKWQKAKIKHYVGIDI-SEESIE----EARERYKQLKKRNNSKQYRFDFIAEFIAADC 130 (331)
T ss_dssp TT-EEEEET-TTTTT------HHHHHHTT-SEEEEEES--HHHHH----HHHHHHHHHHTSTT-HTSEECCEEEEEESTT
T ss_pred CCCeEEEecCCCchh------HHHHHhcCCCEEEEEeC-CHHHHH----HHHHHHHHhccccccccccccchhheecccc
Confidence 678898877 345 44432 22234555433 222332 3555555554321 123344455
Q ss_pred ccCCCCCCCC--CCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 85 HTMDRHPTLS--QMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 85 t~L~~~~~~~--~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..-.-...+. ...||.|=..| =|.... +.+-.+.|+++++..|++||.+..|.-
T Consensus 131 f~~~l~~~~~~~~~~FDvVScQFalHY~Fe-------------se~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 131 FSESLREKLPPRSRKFDVVSCQFALHYAFE-------------SEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp CCSHHHCTSSSTTS-EEEEEEES-GGGGGS-------------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhhhhccccCCCcceeehHHHHHHhcC-------------CHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 5321111123 46999999999 566763 355678899999999999999999864
No 225
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=57.61 E-value=15 Score=30.04 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCeEEEEecCchhHH--HHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFS--DCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||.|-++ .+|........+++...+|..
T Consensus 69 ~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~ 107 (178)
T cd02008 69 DKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNR 107 (178)
T ss_pred CCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCc
Confidence 4567888999999775 455444323457777788764
No 226
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=57.24 E-value=31 Score=28.42 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.++||+||-+.|.. +.+++.++-++++.|+++++.|.+.
T Consensus 84 ~~~~d~vv~DPPFl----------------~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 84 KGKFDVVVIDPPFL----------------SEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred CCCceEEEECCCCC----------------CHHHHHHHHHHHHHHhCccceEEEe
Confidence 56899999999993 3567888888899999998887655
No 227
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=57.15 E-value=33 Score=31.17 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 129 LEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 129 L~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
|.+|++-|..+|++||.++|.=...-.-+.-.....-...||.+..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 6899999999999999999984433222223344455566776654
No 228
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.46 E-value=14 Score=33.71 Aligned_cols=89 Identities=26% Similarity=0.446 Sum_probs=54.1
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-----CCCcEEEeecCChHHHHhcCcc-HHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-----SATNMVASSLDSERTLKTKHWT-SQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-----~~~~l~ATs~ds~~~l~~kY~~-a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
++++|+|- |+--|-+-++-..++ -+.||.|..+|+...+.+ |++ ....+..+ .....+.++-+..+...|
T Consensus 30 g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~e-y~~~v~~~~~~~--~~~~~l~~~~~~e~~~~P 106 (322)
T COG0003 30 GKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEE-YWDEVKDYLARL--LRTRGLGGIYADELATLP 106 (322)
T ss_pred CCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHH-HHHHHHHHHHhh--ccccccchhHHHHHhhCC
Confidence 35566664 776666655654333 236899999999887764 433 33333333 233333455444444433
Q ss_pred C-------------CCCCcccEEEEcCCCCCC
Q 041136 92 T-------------LSQMKFDVIIFNFPHAGH 110 (214)
Q Consensus 92 ~-------------~~~~~FD~IiFNFPH~G~ 110 (214)
. .....||+|||+-|=+|.
T Consensus 107 GidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 107 GIDEALALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 3 235679999999999986
No 229
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=56.13 E-value=22 Score=32.30 Aligned_cols=79 Identities=15% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCCCCeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+-.++++.++||++...+++ +...+|-....+++......... .+..+...+..++.+.|..++.+. +.
T Consensus 276 ~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~d~~~~~~~--~~ 345 (399)
T cd00316 276 YLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHKADYE--------RREELLGEGTEVVDDGDLEELEEL--IR 345 (399)
T ss_pred HhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH--------HHHHhcCCCCEEEeCCCHHHHHHH--Hh
Confidence 44689999999998777654 23345533333444444433221 144455556667766666665542 33
Q ss_pred CCcccEEEEc
Q 041136 95 QMKFDVIIFN 104 (214)
Q Consensus 95 ~~~FD~IiFN 104 (214)
....|.||-+
T Consensus 346 ~~~pdl~ig~ 355 (399)
T cd00316 346 ELKPDLIIGG 355 (399)
T ss_pred hcCCCEEEEC
Confidence 3344444443
No 230
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=56.12 E-value=1e+02 Score=26.83 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=52.4
Q ss_pred EEEEecCchhHH-HHHHHHhC--CCCcEEEeecCCh---HHH--------------HhcCccHHHHHHHHHhCCCEEEEc
Q 041136 22 ILLVGEGDFSFS-DCLARAFG--SATNMVASSLDSE---RTL--------------KTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 22 ILlVGeGnFSFS-~sLa~~~~--~~~~l~ATs~ds~---~~l--------------~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
+.+.-+||..=| ..|++.+. -+.+.+||.+=.| +++ .+.+|+-...++.|+.++++++..
T Consensus 8 MIvfe~GDlnsA~~~L~~sl~~Pf~~~~VatVlVqEsireefi~rvr~~m~pl~~~va~Hpny~rsl~~i~~l~~~~I~~ 87 (215)
T PF07368_consen 8 MIVFEDGDLNSAMHYLLESLHNPFAPGAVATVLVQESIREEFIERVRSRMKPLSPQVANHPNYLRSLKKIKCLNAKTIVA 87 (215)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcccCCcEEEEEEeHHHHHHHHHHHHHhCccCChhhccCcHHHHHHHHHHhcCCeEEEe
Confidence 444459999654 45566542 2468999987443 222 235788889999999999999988
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCC
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHA 108 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~ 108 (214)
+.+.. ....--.||.+|||.
T Consensus 88 ----~~~~~---~~~aSPilV~d~~h~ 107 (215)
T PF07368_consen 88 ----DFENV---PPPASPILVCDFTHS 107 (215)
T ss_pred ----cccCC---CCCCCCEEEcCCCHH
Confidence 11111 122246789999998
No 231
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=55.81 E-value=32 Score=30.71 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=38.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhCCC-CcEEEeec-CChHHHHhcC--------ccHHHHHHHHHhCCCEEEEccccc
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFGSA-TNMVASSL-DSERTLKTKH--------WTSQAHLQSLWSRGCLVLHGVNVH 85 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~~~-~~l~ATs~-ds~~~l~~kY--------~~a~~ni~~L~~~g~~Vl~~VDAt 85 (214)
..+||++| .+| |++|++.+... .-++.||. +.-..+...+ -+++.-.+.|++.++.++ ||||
T Consensus 2 ~~~ilvlGGT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~ll--IDAT 74 (257)
T COG2099 2 MMRILLLGGTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLL--IDAT 74 (257)
T ss_pred CceEEEEeccHH---HHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEE--EECC
Confidence 46788887 333 78899887532 23333333 3333443333 356677888999998877 6888
No 232
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.06 E-value=16 Score=35.93 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=48.9
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
..+|+++|=|.+.-. +++.+. .+..+ +..|..++ .++.+++.|..|++| |||+.+--....-.+
T Consensus 400 ~~~vII~G~Gr~G~~--va~~L~~~g~~v--vvID~d~~----------~v~~~~~~g~~v~~G-Dat~~~~L~~agi~~ 464 (601)
T PRK03659 400 KPQVIIVGFGRFGQV--IGRLLMANKMRI--TVLERDIS----------AVNLMRKYGYKVYYG-DATQLELLRAAGAEK 464 (601)
T ss_pred cCCEEEecCchHHHH--HHHHHHhCCCCE--EEEECCHH----------HHHHHHhCCCeEEEe-eCCCHHHHHhcCCcc
Confidence 568999999998776 776653 22344 55555332 356777889999999 999865422233356
Q ss_pred ccEEEEcCCC
Q 041136 98 FDVIIFNFPH 107 (214)
Q Consensus 98 FD~IiFNFPH 107 (214)
.|.||--.+.
T Consensus 465 A~~vv~~~~d 474 (601)
T PRK03659 465 AEAIVITCNE 474 (601)
T ss_pred CCEEEEEeCC
Confidence 7777766554
No 233
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=54.83 E-value=18 Score=31.07 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=68.1
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.|-..-.++|.||=|+=.|+..||..- ..|+|+=.-. ..+. .+.+. |......-+.-.|.... +
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~-~Al~----~Ar~R---l~~~~~V~~~~~dvp~~-----~ 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISP-RALA----RARER---LAGLPHVEWIQADVPEF-----W 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-H-HHHH----HHHHH---TTT-SSEEEEES-TTT-------
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCH-HHHH----HHHHh---cCCCCCeEEEECcCCCC-----C
Confidence 467777889999955445555588764 2677764332 2222 13333 33323333333344332 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhh
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMG 163 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~ 163 (214)
-.++||.||.- -++- ++ ...+.|..+.......|+|||.+.+-+....++..|....
T Consensus 103 P~~~FDLIV~S--EVlY----------YL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ 159 (201)
T PF05401_consen 103 PEGRFDLIVLS--EVLY----------YL-DDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA 159 (201)
T ss_dssp -SS-EEEEEEE--S-GG----------GS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S-
T ss_pred CCCCeeEEEEe--hHhH----------cC-CCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc
Confidence 45789999864 1221 00 1246788888889999999999998887777788898443
No 234
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.76 E-value=30 Score=31.88 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=42.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..++||++|-|.+..+ +++.+.. +..+++...|. +. ++.+++ .++.+++| |+++........
T Consensus 230 ~~~~iiIiG~G~~g~~--l~~~L~~~~~~v~vid~~~--~~----------~~~~~~~~~~~~~i~g-d~~~~~~L~~~~ 294 (453)
T PRK09496 230 PVKRVMIVGGGNIGYY--LAKLLEKEGYSVKLIERDP--ER----------AEELAEELPNTLVLHG-DGTDQELLEEEG 294 (453)
T ss_pred CCCEEEEECCCHHHHH--HHHHHHhCCCeEEEEECCH--HH----------HHHHHHHCCCCeEEEC-CCCCHHHHHhcC
Confidence 4688999999999887 6666532 34554443332 21 223332 25666666 777654322223
Q ss_pred CCcccEEEEcCCC
Q 041136 95 QMKFDVIIFNFPH 107 (214)
Q Consensus 95 ~~~FD~IiFNFPH 107 (214)
-...|.||--.|.
T Consensus 295 ~~~a~~vi~~~~~ 307 (453)
T PRK09496 295 IDEADAFIALTND 307 (453)
T ss_pred CccCCEEEECCCC
Confidence 3557777765554
No 235
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=54.15 E-value=1.5e+02 Score=26.23 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+...+++||+.|-|-.. ++..+|+..| .++++|+.+.+ .++.++++|+...++. ++.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~------------~~~~a~~~Ga~~vi~~--~~~------ 219 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAA------------ARRLALALGAASAGGA--YDT------ 219 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChH------------HHHHHHHhCCceeccc--ccc------
Confidence 45678999999976554 3455677775 46888755432 2456677888655432 111
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+.+|.++- + .|. . .-+..+.++|+++|++.+.
T Consensus 220 ~~~~~d~~i~-~--~~~---------------~----~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 220 PPEPLDAAIL-F--APA---------------G----GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CcccceEEEE-C--CCc---------------H----HHHHHHHHhhCCCcEEEEE
Confidence 1234776542 1 121 1 1245567788999998553
No 236
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.12 E-value=1.4e+02 Score=25.13 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGD-FSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
.++++|+.|=++ =.-.+++|+.+. .+.+|++++.+. .+ .+.++++.. +....+.+|+++.+....+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~--~~-------~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND--RM-------KKSLQKLVD-EEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch--HH-------HHHHHhhcc-CceeEEeCCCCCHHHHHHHHH
Confidence 457899999652 223333555442 356788887652 21 122344433 2244677899875542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
...++|.+|.|-
T Consensus 76 ~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 76 TIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHhCCCCEEEEcc
Confidence 125689999885
No 237
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.12 E-value=1.3e+02 Score=24.71 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=44.1
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
.+++||++| -|..-.+ |++.+- .+.+|++++.+... + ......++...-...+-+|.++.+....+
T Consensus 4 ~~~~vlItGasg~iG~~--l~~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 4 EGKVAIVTGASSGIGEG--IARRFAAEGARVVVTDRNEEA-A-------ERVAAEILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CCcEEEEECCCChHHHH--HHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 356899999 5655544 554432 24578888877532 1 11223333312245677788876542111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
....+|.||.|-.
T Consensus 74 ~~~~~~~~~d~vi~~ag 90 (251)
T PRK07231 74 AALERFGSVDILVNNAG 90 (251)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1236899998864
No 238
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.34 E-value=21 Score=24.88 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=40.9
Q ss_pred eEEEEecCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcCc-c-HHHHHHHHHhCCCEEEEccccccCCC
Q 041136 21 RILLVGEGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKHW-T-SQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 21 ~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY~-~-a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
||++||=|.-+-- ..|++ ++ ..+ |-++..+.+....+ + +....+.|++.|+.++++..++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~-~g--~~v--tli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE-LG--KEV--TLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TT--SEE--EEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH-hC--cEE--EEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 6899998877654 33433 33 233 44454444442232 2 33456889999999999999988765
No 239
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=51.64 E-value=23 Score=29.87 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=44.6
Q ss_pred CeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-----
Q 041136 20 QRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL----- 93 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~----- 93 (214)
+++|+.|-+. ...+++++.+. .+.+|+.++.+.. .+ .+..+.|+..+....+.+|+++.+....+
T Consensus 1 m~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 1 MNVLVTASSR-GIGFNVARELLKKGARVVISSRNEE-NL-------EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred CeEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 3689999432 34555666542 2457888876532 22 22345555555455678898875432111
Q ss_pred -CCCcccEEEEcCC
Q 041136 94 -SQMKFDVIIFNFP 106 (214)
Q Consensus 94 -~~~~FD~IiFNFP 106 (214)
...+.|.||.|--
T Consensus 72 ~~~g~id~li~naG 85 (259)
T PRK08340 72 ELLGGIDALVWNAG 85 (259)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899998853
No 240
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=50.54 E-value=22 Score=35.19 Aligned_cols=70 Identities=27% Similarity=0.427 Sum_probs=43.1
Q ss_pred CCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++|+++|=|.+--. +++.+.. +..+ +..|..++ .++.+++.|..|++| |+|+.+-.....-.+
T Consensus 400 ~~~vII~G~Gr~G~~--va~~L~~~g~~v--vvID~d~~----------~v~~~~~~g~~v~~G-Dat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQI--VGRLLLSSGVKM--TVLDHDPD----------HIETLRKFGMKVFYG-DATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHH--HHHHHHhCCCCE--EEEECCHH----------HHHHHHhcCCeEEEE-eCCCHHHHHhcCCCc
Confidence 578999999998776 6666532 2344 44454332 366677788888888 888764321122234
Q ss_pred ccEEEE
Q 041136 98 FDVIIF 103 (214)
Q Consensus 98 FD~IiF 103 (214)
.|.||-
T Consensus 465 A~~vvv 470 (621)
T PRK03562 465 AEVLIN 470 (621)
T ss_pred CCEEEE
Confidence 555554
No 241
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.21 E-value=1.5e+02 Score=24.54 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.| -|..- .++++.+. .+.+|++++.+.. . .++-.+.++..|. ...+.+|.++.+....+
T Consensus 6 ~k~~lItGas~giG--~~ia~~l~~~G~~v~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 6 GKVAIITGASSGIG--RAAAKLFAREGAKVVVGARRQA-E-------LDQLVAEIRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CCEEEEeCCCChHH--HHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 56889998 34332 23444432 2457888877632 1 2223445555554 45677888875542111
Q ss_pred ----CCCcccEEEEcCCC
Q 041136 94 ----SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 ----~~~~FD~IiFNFPH 107 (214)
...+.|.||.|---
T Consensus 76 ~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 76 LAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 12368999988643
No 242
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=48.99 E-value=88 Score=27.33 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=45.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||=|.=.++..|++.. ..++|.-.|. ++.+ .+.+++. ..++.+ +.-|+.++.- .
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~--~~~~---~~~~~~~---~~~v~~-i~~D~~~~~~----~ 102 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDR--DLAP---ILAETFA---EDNLTI-IEGDALKVDL----S 102 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCH--HHHH---HHHHhhc---cCceEE-EEChhhcCCH----H
Confidence 34677899999955555556688774 2666655553 3332 2333332 124444 4457887642 1
Q ss_pred CCcccEEEEcCCCC
Q 041136 95 QMKFDVIIFNFPHA 108 (214)
Q Consensus 95 ~~~FD~IiFNFPH~ 108 (214)
...+|.||-|.|..
T Consensus 103 ~~~~~~vv~NlPY~ 116 (272)
T PRK00274 103 ELQPLKVVANLPYN 116 (272)
T ss_pred HcCcceEEEeCCcc
Confidence 11169999999963
No 243
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=48.66 E-value=32 Score=25.94 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=34.0
Q ss_pred eEEEEecCchhHHHHHHHH----hCC-CCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHG 81 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~ 81 (214)
.|++++-| +||.+++.. .|. ..++.|-++.....+..-+....+-++.+. ..|+.|+.+
T Consensus 1 giii~sHG--~~A~g~~~~~~~i~G~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~vlil~D 65 (116)
T PF03610_consen 1 GIIIASHG--SLAEGLLESAEMILGEDQDNIEAVDLYPDESIEDFEEKLEEAIEELDEGDGVLILTD 65 (116)
T ss_dssp EEEEEEET--THHHHHHHHHHHHHTSTCSSEEEEEETTTSCHHHHHHHHHHHHHHCCTTSEEEEEES
T ss_pred CEEEEECc--HHHHHHHHHHHHHcCCCcccEEEEECcCCCCHHHHHHHHHHHHHhccCCCcEEEEee
Confidence 48999999 778888665 455 458999887654333211123344444443 234444433
No 244
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=47.06 E-value=3.6 Score=33.65 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHhCCCCcEEEeecCChHHH
Q 041136 28 GDFSFSDCLARAFGSATNMVASSLDSERTL 57 (214)
Q Consensus 28 GnFSFS~sLa~~~~~~~~l~ATs~ds~~~l 57 (214)
||+|||+||....+. .+|-||+-+.++.
T Consensus 96 g~LSFslAlLD~~~n--GvVltsI~~Re~s 123 (151)
T PF14584_consen 96 GDLSFSLALLDDNNN--GVVLTSIHSREES 123 (151)
T ss_pred ccceeeeEEEeCCCC--EEEEEeeecCCCc
Confidence 899999999877653 5888888777654
No 245
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=47.05 E-value=1.1e+02 Score=27.51 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 19 NQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
++++++||.|+-..-.|.. ...+.. .++.....+. . ..+.....++.|++.|+.++.+...+.++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~-~Vtvi~~~~~--~--~~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 237 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAE-KVYLAYRRTI--N--EAPAGKYEIERLIARGVEFLELVTPVRII 237 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeecch--h--hCCCCHHHHHHHHHcCCEEeeccCceeee
Confidence 6799999999875543321 223321 2444332221 1 12333445778999999999987665554
No 246
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=46.84 E-value=43 Score=25.66 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=36.4
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecCC---hHHHHhcCccHHHHHHHHHh-CCCEEEEcc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLDS---ERTLKTKHWTSQAHLQSLWS-RGCLVLHGV 82 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ds---~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~V 82 (214)
+||+++=|+ ||.++... .|...++.+-++.. .+++.++ .++.++.+.+ .|+.|+-++
T Consensus 3 ~ili~sHG~--~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~---l~~~i~~~~~~~~vivltDl 67 (116)
T TIGR00824 3 AIIISGHGQ--AAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEK---YNAALADLDTEEEVLFLVDI 67 (116)
T ss_pred EEEEEecHH--HHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHH---HHHHHHhcCCCCCEEEEEeC
Confidence 689999999 66667654 35556788888754 4455543 3445566643 456666554
No 247
>PRK07904 short chain dehydrogenase; Provisional
Probab=45.41 E-value=81 Score=26.70 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=48.4
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHhC-C-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEccccccCCCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAFG-S-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~~-~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDAt~L~~~~ 91 (214)
.+.++||+.| -|..-. +||+++- . +.+|++++.+....+ .+.+++++..|. ...+..|+++.....
T Consensus 6 ~~~~~vlItGas~giG~--~la~~l~~~gg~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 6 GNPQTILLLGGTSEIGL--AICERYLKNAPARVVLAALPDDPRR-------DAAVAQMKAAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred CCCcEEEEEcCCcHHHH--HHHHHHHhcCCCeEEEEeCCcchhH-------HHHHHHHHhcCCCceEEEEecCCChHHHH
Confidence 3567899999 444433 3555531 2 368999987754322 223455555443 345678888755421
Q ss_pred C-----CCCCcccEEEEcCCCCC
Q 041136 92 T-----LSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 92 ~-----~~~~~FD~IiFNFPH~G 109 (214)
. ......|.+|.|....+
T Consensus 77 ~~~~~~~~~g~id~li~~ag~~~ 99 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAFGLLG 99 (253)
T ss_pred HHHHHHHhcCCCCEEEEeeecCC
Confidence 1 11247999998876543
No 248
>PRK05866 short chain dehydrogenase; Provisional
Probab=45.32 E-value=40 Score=29.42 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=43.2
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||++|= |..-.+ |++.+ ..+.+|++++.+.+ .+ ++..+.++..|. ...+.+|+++.+....+
T Consensus 39 ~~k~vlItGasggIG~~--la~~La~~G~~Vi~~~R~~~-~l-------~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~ 108 (293)
T PRK05866 39 TGKRILLTGASSGIGEA--AAEQFARRGATVVAVARRED-LL-------DAVADRITRAGGDAMAVPCDLSDLDAVDALV 108 (293)
T ss_pred CCCEEEEeCCCcHHHHH--HHHHHHHCCCEEEEEECCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3578999994 554333 44443 12468998887632 22 223344444444 34677888875432111
Q ss_pred -----CCCcccEEEEc
Q 041136 94 -----SQMKFDVIIFN 104 (214)
Q Consensus 94 -----~~~~FD~IiFN 104 (214)
.....|.||.|
T Consensus 109 ~~~~~~~g~id~li~~ 124 (293)
T PRK05866 109 ADVEKRIGGVDILINN 124 (293)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12368998887
No 249
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=44.76 E-value=68 Score=28.36 Aligned_cols=63 Identities=22% Similarity=0.379 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhc-cC---------------------------CCCEEEEEecCCCCCCcccHh---------hHHHhcCC
Q 041136 128 LLEAFLKNGREM-LG---------------------------EGGEVHVTLRDDHPYNQWNVM---------GLADKLGL 170 (214)
Q Consensus 128 LL~~Ff~Sa~~l-L~---------------------------~~G~i~VTl~~~~Py~~W~i~---------~lA~~~gl 170 (214)
-+..||.-|+.+ |+ .-|-..|++..-+|++.|+-. ..|+-.|-
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA 97 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGA 97 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCC
Confidence 378899888876 42 237788899889999999833 34445566
Q ss_pred EEEEEecCCCCCCCCCcccc
Q 041136 171 VLKEKVEFLKQDFPGYHNKR 190 (214)
Q Consensus 171 ~l~~~~~F~~~~yPgY~~~r 190 (214)
.-.--+|-+..+|||=.-+|
T Consensus 98 ~aLvlcPlNd~s~~~~~vr~ 117 (272)
T COG4130 98 KALVLCPLNDGSWPGTAVRR 117 (272)
T ss_pred ceEEEEeccCCCCCCcccch
Confidence 65566788888888866544
No 250
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=44.61 E-value=2.4e+02 Score=25.52 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEE-EEccccccCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLV-LHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~V-l~~VDAt~L~~~~~~ 93 (214)
.+.+||-||-|.=.++..|++. + . .+|+.|..+.+.+ .+.++....-.. +..+ +...|...+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g--~--~V~gvD~S~~ml~---~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l------ 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G--A--IVSASDISAAMVA---EAERRAKEALAALPPEVLPKFEANDLESL------ 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C--C--EEEEEECCHHHHH---HHHHHHHhcccccccccceEEEEcchhhc------
Confidence 4679999995554555557764 2 2 4567785554442 355555443110 1122 222343322
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
.++||.|+-...
T Consensus 210 -~~~fD~Vv~~~v 221 (315)
T PLN02585 210 -SGKYDTVTCLDV 221 (315)
T ss_pred -CCCcCEEEEcCE
Confidence 367999986644
No 251
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.44 E-value=24 Score=34.15 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEecCchhHHHH--HHHHhCCCCcEEEe
Q 041136 15 HYTNNQRILLVGEGDFSFSDC--LARAFGSATNMVAS 49 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~s--La~~~~~~~~l~AT 49 (214)
.+-.++|+.++||++...+++ |.+.+|- .+++|
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~ELGm--~vv~~ 335 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILAREMGI--RVSCA 335 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHhCCC--EEEEe
Confidence 356789999999998888765 5567764 34444
No 252
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=44.40 E-value=42 Score=30.96 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=19.3
Q ss_pred CeEEEEecCchhHHHHHHHHhC-CCCcEEEeec
Q 041136 20 QRILLVGEGDFSFSDCLARAFG-SATNMVASSL 51 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ 51 (214)
++|+++|-|.+..+ +++.+. .+..+++...
T Consensus 1 m~viIiG~G~ig~~--~a~~L~~~g~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYT--LAENLSGENNDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHH--HHHHHHhCCCcEEEEEC
Confidence 47999999988776 665542 2345554443
No 253
>PRK13530 arsenate reductase; Provisional
Probab=44.39 E-value=96 Score=24.24 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCeEEEEecCchh---HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE
Q 041136 19 NQRILLVGEGDFS---FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV 78 (214)
Q Consensus 19 ~~~ILlVGeGnFS---FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V 78 (214)
.++||+|-.||-. .|-+|++++.. .++.+.|-=.+. .+-....++.|++.|+.+
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~-~~~~v~SAG~~~-----~~~~~~a~~~l~e~Gi~~ 59 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLG-DKWNVYSAGIEA-----HGVNPNAIKAMKEVGIDI 59 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcC-CCEEEECCCCCC-----CCCCHHHHHHHHHcCCCc
Confidence 4689999999999 89999988643 245444322211 122234466777766643
No 254
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.23 E-value=1.9e+02 Score=24.31 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCeEEEEecC-chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGEG-DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGeG-nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
++++|+.|=| .=...+++|+.+. .+.+|+.++.+..++..+ +..+.+.. ....+.+|+++.+....+
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~------~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTE------RIAKRLPE--PAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHH------HHHHhcCC--CCcEEeCCCCCHHHHHHHHHH
Confidence 5789999952 2234444665542 356888887754222211 11122221 234577888876542211
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
...++|.+|.|-
T Consensus 79 ~~~~~g~iD~li~nA 93 (256)
T PRK07889 79 VREHVDGLDGVVHSI 93 (256)
T ss_pred HHHHcCCCcEEEEcc
Confidence 125699998874
No 255
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=43.96 E-value=1.1e+02 Score=26.98 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=53.4
Q ss_pred CCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++||+.|-|-... +..||+..| ...|++|.... +.++.++++|+...++.+-.++.+.... ..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~------------~~~~~a~~lGa~~vi~~~~~~~~~~~~~-~g 234 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSP------------RSLSLAREMGADKLVNPQNDDLDHYKAE-KG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCH------------HHHHHHHHcCCcEEecCCcccHHHHhcc-CC
Confidence 578999999887764 345677775 33577775442 2355666778765543222122211111 12
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+|.| |+. +|.. .. +..+-++|+++|.+.+.
T Consensus 235 ~~D~v-id~--~G~~---------------~~----~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 235 YFDVS-FEV--SGHP---------------SS----INTCLEVTRAKGVMVQV 265 (343)
T ss_pred CCCEE-EEC--CCCH---------------HH----HHHHHHHhhcCCEEEEE
Confidence 47865 453 4531 01 22355678999998544
No 256
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.85 E-value=2e+02 Score=24.31 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=42.6
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGD-FSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~- 93 (214)
.++.+|+.|=+. ---.+++|+.+. .+.+|+.+..+. .+ ++.+++|.. .|....+.+|+++.+....+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~--~~-------~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE--VL-------EKRVKPLAEEIGCNFVSELDVTNPKSISNLF 77 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch--HH-------HHHHHHHHHhcCCceEEEccCCCHHHHHHHH
Confidence 357889999642 123333444431 245677765442 11 122444433 25555678899886542111
Q ss_pred -----CCCcccEEEEcCC
Q 041136 94 -----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 -----~~~~FD~IiFNFP 106 (214)
.-.+.|.+|.|--
T Consensus 78 ~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHHcCCccEEEEccc
Confidence 1256899988753
No 257
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=43.10 E-value=1.3e+02 Score=25.84 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCCCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+...+.+||+.|.|-+.-+ ..+|+..| ..+++|+-.. +..+.+++.|+...+..+.. .
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~------------~~~~~~~~~g~~~~~~~~~~-------~ 210 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHS------------EKLALARRLGVETVLPDEAE-------S 210 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCH------------HHHHHHHHcCCcEEeCcccc-------c
Confidence 4567899999998755433 23456665 4577775332 12445555677655544321 2
Q ss_pred CCCcccEEEE
Q 041136 94 SQMKFDVIIF 103 (214)
Q Consensus 94 ~~~~FD~IiF 103 (214)
....+|.|+-
T Consensus 211 ~~~~~d~vid 220 (319)
T cd08242 211 EGGGFDVVVE 220 (319)
T ss_pred cCCCCCEEEE
Confidence 3356888764
No 258
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=42.87 E-value=57 Score=24.89 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=35.8
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEcc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGV 82 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~V 82 (214)
.||+++=| +||.+++.. +|...++.+-++.....+.+-.....+-++.+.. .|+.|+.++
T Consensus 2 ~ili~sHG--~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 2 GIIIATHG--GFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDL 66 (122)
T ss_pred eEEEEcCH--HHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 58999999 888888765 3444578888766443332111223444555543 456666665
No 259
>PRK06914 short chain dehydrogenase; Provisional
Probab=42.82 E-value=2e+02 Score=24.16 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCC
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+++|+.| -|..-.+ |++.+ ..+.+|++++.+... +. +..+.+... +....+.+|+++.+....+
T Consensus 3 ~k~~lItGasg~iG~~--la~~l~~~G~~V~~~~r~~~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 72 (280)
T PRK06914 3 KKIAIVTGASSGFGLL--TTLELAKKGYLVIATMRNPEK-QE-------NLLSQATQLNLQQNIKVQQLDVTDQNSIHNF 72 (280)
T ss_pred CCEEEEECCCchHHHH--HHHHHHhCCCEEEEEeCCHHH-HH-------HHHHHHHhcCCCCceeEEecCCCCHHHHHHH
Confidence 35789999 4555444 44432 235688888766421 11 112222222 2455678899885432111
Q ss_pred C-----CCcccEEEEcCC
Q 041136 94 S-----QMKFDVIIFNFP 106 (214)
Q Consensus 94 ~-----~~~FD~IiFNFP 106 (214)
. -.+.|.||.|--
T Consensus 73 ~~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 73 QLVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHHhcCCeeEEEECCc
Confidence 1 146799998853
No 260
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=42.68 E-value=78 Score=29.31 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=48.5
Q ss_pred CeEEEEecCchh--HHHHHHHHhC-------C--CCcEEEeecCChHHHHhcCcc--HHHHHHHHHhCCCEEEEcccccc
Q 041136 20 QRILLVGEGDFS--FSDCLARAFG-------S--ATNMVASSLDSERTLKTKHWT--SQAHLQSLWSRGCLVLHGVNVHT 86 (214)
Q Consensus 20 ~~ILlVGeGnFS--FS~sLa~~~~-------~--~~~l~ATs~ds~~~l~~kY~~--a~~ni~~L~~~g~~Vl~~VDAt~ 86 (214)
.+|++||-|.-. +|..|+..+. + ...+-.|-++..+.+...++. ...-.+.|++.|+.|+.+.-++.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~ 253 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKE 253 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 589999988754 4444554320 0 012334444544444333332 33456788999999998865555
Q ss_pred CCCCC-CC---CCCcccEEEEcCC
Q 041136 87 MDRHP-TL---SQMKFDVIIFNFP 106 (214)
Q Consensus 87 L~~~~-~~---~~~~FD~IiFNFP 106 (214)
+.... .+ ....+|.|||--+
T Consensus 254 v~~~~v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 254 VLDKEVVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred EeCCEEEECCCCEEEccEEEEccC
Confidence 54321 01 2346899999543
No 261
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.35 E-value=1.4e+02 Score=27.55 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++|+++|=|- ..+++|+.+ ..+.+|+++..+..+.+ .+.++.|.+.|+.++.+-.+..+ ..
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~-------~~ 67 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQL-------KEALEELGELGIELVLGEYPEEF-------LE 67 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHH-------HHHHHHHHhcCCEEEeCCcchhH-------hh
Confidence 468999999887 445677664 23457777765543322 23356677778876655443311 13
Q ss_pred cccEEEEcCCCC
Q 041136 97 KFDVIIFNFPHA 108 (214)
Q Consensus 97 ~FD~IiFNFPH~ 108 (214)
.+|.||.+ |+.
T Consensus 68 ~~d~vv~~-~g~ 78 (450)
T PRK14106 68 GVDLVVVS-PGV 78 (450)
T ss_pred cCCEEEEC-CCC
Confidence 47877765 444
No 262
>PRK07454 short chain dehydrogenase; Provisional
Probab=42.34 E-value=45 Score=27.54 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=43.1
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~ 93 (214)
++.+++|+.| -|.+-. +|++.+. .+..|++++.+..+ + .+-.+.++..+ -...+-+|+++.+....+
T Consensus 4 ~~~k~vlItG~sg~iG~--~la~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (241)
T PRK07454 4 NSMPRALITGASSGIGK--ATALAFAKAGWDLALVARSQDA-L-------EALAAELRSTGVKAAAYSIDLSNPEAIAPG 73 (241)
T ss_pred CCCCEEEEeCCCchHHH--HHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 4557899999 454444 4666542 34578888876432 1 12223333333 344667899876542111
Q ss_pred ------CCCcccEEEEc
Q 041136 94 ------SQMKFDVIIFN 104 (214)
Q Consensus 94 ------~~~~FD~IiFN 104 (214)
.....|.||.|
T Consensus 74 ~~~~~~~~~~id~lv~~ 90 (241)
T PRK07454 74 IAELLEQFGCPDVLINN 90 (241)
T ss_pred HHHHHHHcCCCCEEEEC
Confidence 11357888876
No 263
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=41.31 E-value=1.4e+02 Score=26.47 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=54.7
Q ss_pred CCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc--CCCCCCC
Q 041136 17 TNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT--MDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~--L~~~~~~ 93 (214)
..+++||++|-|... ++..+|+..+. ++++++.... ..+.++.++++|+.. ||..+ +.. ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~~~~---------~~~~~~~~~~~Ga~~---v~~~~~~~~~--~~ 234 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF--EVYVLNRRDP---------PDPKADIVEELGATY---VNSSKTPVAE--VK 234 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCC---------CHHHHHHHHHcCCEE---ecCCccchhh--hh
Confidence 467899999988775 45567888763 6888775311 112355667788874 33222 111 01
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
....+|.||=- +|.. ..+..+..+|+++|.+.+
T Consensus 235 ~~~~~d~vid~---~g~~-------------------~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 235 LVGEFDLIIEA---TGVP-------------------PLAFEALPALAPNGVVIL 267 (355)
T ss_pred hcCCCCEEEEC---cCCH-------------------HHHHHHHHHccCCcEEEE
Confidence 12457866542 3421 024446677899998754
No 264
>PRK06181 short chain dehydrogenase; Provisional
Probab=41.20 E-value=2e+02 Score=23.97 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=41.9
Q ss_pred CeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C-
Q 041136 20 QRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S- 94 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~- 94 (214)
++||+.| -|....+ +++.+ ..+.+|++++.+.. . ..+..+.|+..+. ...+.+|.++......+ .
T Consensus 2 ~~vlVtGasg~iG~~--la~~l~~~g~~Vi~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRA--LAVRLARAGAQLVLAARNET-R-------LASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHH--HHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 5788888 4655544 44442 22457888876532 1 2223444555454 44567888876542111 1
Q ss_pred ----CCcccEEEEc
Q 041136 95 ----QMKFDVIIFN 104 (214)
Q Consensus 95 ----~~~FD~IiFN 104 (214)
....|.||.|
T Consensus 72 ~~~~~~~id~vi~~ 85 (263)
T PRK06181 72 AVARFGGIDILVNN 85 (263)
T ss_pred HHHHcCCCCEEEEC
Confidence 1357988877
No 265
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=41.14 E-value=21 Score=26.64 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CC-CCCCcccEEEEcCCCCC
Q 041136 32 FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PT-LSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 32 FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~-~~~~~FD~IiFNFPH~G 109 (214)
++..||++.| .+|++|+.+.. .++.+++.|+....+-+..++.+. .. .....+|.||=. +|
T Consensus 5 ~a~q~ak~~G--~~vi~~~~~~~------------k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~---~g 67 (130)
T PF00107_consen 5 MAIQLAKAMG--AKVIATDRSEE------------KLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDC---VG 67 (130)
T ss_dssp HHHHHHHHTT--SEEEEEESSHH------------HHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEES---SS
T ss_pred HHHHHHHHcC--CEEEEEECCHH------------HHHHHHhhcccccccccccccccccccccccccceEEEEe---cC
Confidence 5667888887 68999986543 256678888777766655532221 01 123578877643 23
Q ss_pred CCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 110 HSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 110 ~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.. . -+..+-.+|+++|++.+.
T Consensus 68 ~~---------------~----~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 SG---------------D----TLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp SH---------------H----HHHHHHHHEEEEEEEEEE
T ss_pred cH---------------H----HHHHHHHHhccCCEEEEE
Confidence 10 0 123366789999998665
No 266
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=40.64 E-value=1e+02 Score=27.68 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=48.2
Q ss_pred CCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+|++||=|=+-++ ..|++.++. ....+++|..++-.+ -+..-+...-.++. .-++..|+..+.. .-.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~--~~~v~~iD~d~~A~~---~a~~lv~~~~~L~~~m~f~~~d~~~~~~----dl~ 191 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGP--GARVHNIDIDPEANE---LARRLVASDLGLSKRMSFITADVLDVTY----DLK 191 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT----EEEEEESSHHHHH---HHHHHHH---HH-SSEEEEES-GGGG-G----G--
T ss_pred cceEEEEcCCCcchHHHHHHHHhCC--CCeEEEEeCCHHHHH---HHHHHHhhcccccCCeEEEecchhcccc----ccc
Confidence 359999999999996 445666753 466677886554431 23333341112233 3456667776542 124
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
.||.|++-= .+|. +..+. . +.|......+++|..|.+.-..|
T Consensus 192 ~~DvV~lAa-lVg~----~~e~K------~----~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 192 EYDVVFLAA-LVGM----DAEPK------E----EILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp --SEEEE-T-T-S--------SH------H----HHHHHHHHHS-TTSEEEEEE--G
T ss_pred cCCEEEEhh-hccc----ccchH------H----HHHHHHHhhCCCCcEEEEecchh
Confidence 699998742 2332 11111 1 22344566778888887774443
No 267
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=40.42 E-value=50 Score=30.35 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=35.4
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKH 61 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY 61 (214)
..+..++||++| =|==+|+.-||++++ ...++|+|-++..++.+++
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~-~~~v~t~~s~e~~~l~k~l 201 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG-AIKVVTACSKEKLELVKKL 201 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC-CcEEEEEcccchHHHHHHc
Confidence 456788999999 455678888999997 6789999887766666554
No 268
>PRK12742 oxidoreductase; Provisional
Probab=40.30 E-value=1.8e+02 Score=23.64 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-C-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-L-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~-~ 94 (214)
+++||+.| -|..-.+ +++.+. .+.++++++..+.+.+. +.. .+.++. .+.+|.++...... + .
T Consensus 6 ~k~vlItGasggIG~~--~a~~l~~~G~~v~~~~~~~~~~~~-------~l~---~~~~~~-~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAA--IVRRFVTDGANVRFTYAGSKDAAE-------RLA---QETGAT-AVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHH--HHHHHHHCCCEEEEecCCCHHHHH-------HHH---HHhCCe-EEecCCCCHHHHHHHHHH
Confidence 57899999 5777666 544432 24577777654433221 111 122443 34567776443111 1 1
Q ss_pred CCcccEEEEcC
Q 041136 95 QMKFDVIIFNF 105 (214)
Q Consensus 95 ~~~FD~IiFNF 105 (214)
..++|.||.|-
T Consensus 73 ~~~id~li~~a 83 (237)
T PRK12742 73 SGALDILVVNA 83 (237)
T ss_pred hCCCcEEEECC
Confidence 24589888774
No 269
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=40.14 E-value=18 Score=33.10 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.7
Q ss_pred HHHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 121 LIKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 121 ~i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
+|.-|.|| |..++.+|..+|++||++ .||
T Consensus 210 RI~VN~EL~~L~~~L~~a~~~L~~gGrl~VIS 241 (310)
T PF01795_consen 210 RIAVNDELEELERGLEAAPDLLKPGGRLVVIS 241 (310)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 35668887 999999999999999998 556
No 270
>PRK05650 short chain dehydrogenase; Provisional
Probab=39.67 E-value=39 Score=28.63 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=42.6
Q ss_pred CeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC---
Q 041136 20 QRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~--- 93 (214)
++||+.| .|..-.+ |++.+ ..+..|++++.+.+. .++-++.|+..|. ...+.+|.++......+
T Consensus 1 ~~vlVtGasggIG~~--la~~l~~~g~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (270)
T PRK05650 1 NRVMITGAASGLGRA--IALRWAREGWRLALADVNEEG--------GEETLKLLREAGGDGFYQRCDVRDYSQLTALAQA 70 (270)
T ss_pred CEEEEecCCChHHHH--HHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 3688888 5544333 54443 234578888766421 2233445554443 44567788876542111
Q ss_pred ---CCCcccEEEEcCC
Q 041136 94 ---SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ---~~~~FD~IiFNFP 106 (214)
....+|.||.|-.
T Consensus 71 i~~~~~~id~lI~~ag 86 (270)
T PRK05650 71 CEEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899998853
No 271
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=39.41 E-value=31 Score=28.64 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=24.7
Q ss_pred CCCeEEEEecCchhHHH---HHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD---CLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~---sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|-++. +-+..++ .+++...++..
T Consensus 75 ~~~vv~i~GDG~f~m~~~eL~Ta~~~~--lpviivV~NN~ 112 (202)
T cd02006 75 DRQVVALSGDYDFQFMIEELAVGAQHR--IPYIHVLVNNA 112 (202)
T ss_pred CCeEEEEEeChHhhccHHHHHHHHHhC--CCeEEEEEeCc
Confidence 34568999999999974 3344554 46777787764
No 272
>PRK04148 hypothetical protein; Provisional
Probab=39.03 E-value=1.2e+02 Score=24.29 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=37.4
Q ss_pred CCCeEEEEecCch--hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC-
Q 041136 18 NNQRILLVGEGDF--SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS- 94 (214)
Q Consensus 18 ~~~~ILlVGeGnF--SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~- 94 (214)
++.+||.||=| | ++|..|++ . +..|+|+=.+.. + ++..+..++.+..+ |..+ +.+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~-~--G~~ViaIDi~~~---------a---V~~a~~~~~~~v~d-Dlf~----p~~~~ 74 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKE-S--GFDVIVIDINEK---------A---VEKAKKLGLNAFVD-DLFN----PNLEI 74 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHH-C--CCEEEEEECCHH---------H---HHHHHHhCCeEEEC-cCCC----CCHHH
Confidence 45789999999 5 45655664 2 356777655443 2 22333345544332 3332 2222
Q ss_pred CCcccEEEEcCC
Q 041136 95 QMKFDVIIFNFP 106 (214)
Q Consensus 95 ~~~FD~IiFNFP 106 (214)
.+.+|.|.-=-|
T Consensus 75 y~~a~liysirp 86 (134)
T PRK04148 75 YKNAKLIYSIRP 86 (134)
T ss_pred HhcCCEEEEeCC
Confidence 456888886544
No 273
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=38.97 E-value=38 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=23.3
Q ss_pred CCCeEEEEecCchhHHH-HH--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sL--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|.++. .| +..++ .+++...++..
T Consensus 68 ~~~vv~i~GDG~f~~~~~eL~ta~~~~--lpi~ivV~nN~ 105 (186)
T cd02015 68 DKTVICIDGDGSFQMNIQELATAAQYN--LPVKIVILNNG 105 (186)
T ss_pred CCeEEEEEcccHHhccHHHHHHHHHhC--CCeEEEEEECC
Confidence 34668899999988853 23 33443 46777777764
No 274
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.78 E-value=44 Score=27.48 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=44.6
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCC--
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPT-- 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~-- 92 (214)
.++++|++| .|..-.+ +++.+. .+.+++.++.+.. .+ .+..+.++..|.. ..+.+|.++......
T Consensus 4 ~~~~~lItG~~g~iG~~--~a~~l~~~G~~vi~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (253)
T PRK08217 4 KDKVIVITGGAQGLGRA--MAEYLAQKGAKLALIDLNQE-KL-------EEAVAECGALGTEVRGYAANVTDEEDVEATF 73 (253)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 467899999 5776665 444331 2356777766542 22 2233444544543 467888876543111
Q ss_pred --C--CCCcccEEEEcCC
Q 041136 93 --L--SQMKFDVIIFNFP 106 (214)
Q Consensus 93 --~--~~~~FD~IiFNFP 106 (214)
. ....+|.||.|--
T Consensus 74 ~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 74 AQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 0 1146899998854
No 275
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.77 E-value=50 Score=27.56 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| .|.. ..++++.+. .+.+|++++.+.+ . .++..+.++..|. ...+.+|.++.+....+
T Consensus 8 ~~k~vlVtGas~gI--G~~ia~~l~~~G~~V~~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T PRK05867 8 HGKRALITGASTGI--GKRVALAYVEAGAQVAIAARHLD-A-------LEKLADEIGTSGGKVVPVCCDVSQHQQVTSML 77 (253)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEcCCHH-H-------HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 367899999 4544 334555532 3457888877542 2 2223445555454 34567888875432111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.+.|.+|.|-
T Consensus 78 ~~~~~~~g~id~lv~~a 94 (253)
T PRK05867 78 DQVTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHHHhCCCCEEEECC
Confidence 114689998884
No 276
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=38.74 E-value=21 Score=28.04 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCeEEEEecCchhHHH-HHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sLa~~~~~~~~l~ATs~ds~ 54 (214)
+.+.|+++|||.|-++. .|+.......+++.-.++..
T Consensus 46 ~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~ 83 (153)
T PF02775_consen 46 DRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNG 83 (153)
T ss_dssp TSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESS
T ss_pred cceeEEecCCcceeeccchhHHHhhccceEEEEEEeCC
Confidence 55678999999999972 23322222347888888763
No 277
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=38.54 E-value=1e+02 Score=28.90 Aligned_cols=65 Identities=6% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 18 NNQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
..++|++||-|+...-.|.. ..++ ..|+.-...+..++ +....-++.|++.|+.++++..++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~~~~----~~~~~~~~~l~~~GV~~~~~~~~~~i~ 336 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTREDM----TARVEEIAHAEEEGVKFHFLCQPVEII 336 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCcccC----CCCHHHHHHHHhCCCEEEeccCcEEEE
Confidence 56899999999876653332 2343 34444444333222 233445678889999999888777664
No 278
>PRK12831 putative oxidoreductase; Provisional
Probab=38.50 E-value=73 Score=30.12 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=41.8
Q ss_pred CCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 17 TNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
...++|++||-||-..-.|. +..++ ..|+.....+..++. ....-++.+++.|+.++++...+.+.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~~~~m~----a~~~e~~~a~~eGV~i~~~~~~~~i~ 345 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRSEEELP----ARVEEVHHAKEEGVIFDLLTNPVEIL 345 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecCcccCC----CCHHHHHHHHHcCCEEEecccceEEE
Confidence 46789999999998775443 23344 345555544433332 22233556777899999888777764
No 279
>PRK06953 short chain dehydrogenase; Provisional
Probab=38.06 E-value=80 Score=25.80 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=41.0
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC----C
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT----L 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~----~ 93 (214)
+++|+.| -|.+-.+ +++++. .+.+|+++..+.+. ++.++..++. .+.+|+++...-.. +
T Consensus 2 ~~vlvtG~sg~iG~~--la~~L~~~G~~v~~~~r~~~~------------~~~~~~~~~~-~~~~D~~~~~~v~~~~~~~ 66 (222)
T PRK06953 2 KTVLIVGASRGIGRE--FVRQYRADGWRVIATARDAAA------------LAALQALGAE-ALALDVADPASVAGLAWKL 66 (222)
T ss_pred ceEEEEcCCCchhHH--HHHHHHhCCCEEEEEECCHHH------------HHHHHhccce-EEEecCCCHHHHHHHHHHh
Confidence 4688888 5655443 555432 24577777655321 2233444554 56788887543211 2
Q ss_pred CCCcccEEEEcCCC
Q 041136 94 SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 ~~~~FD~IiFNFPH 107 (214)
...++|.||+|=.-
T Consensus 67 ~~~~~d~vi~~ag~ 80 (222)
T PRK06953 67 DGEALDAAVYVAGV 80 (222)
T ss_pred cCCCCCEEEECCCc
Confidence 33578999987543
No 280
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=37.82 E-value=41 Score=28.15 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=44.3
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|..-.+ |++.+. .+.+|+.++.+.. .+ ....+.++..+. ...+.+|.++.+.-..+
T Consensus 11 ~~k~ilItGa~g~IG~~--la~~l~~~G~~V~~~~r~~~-~~-------~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQ--IAEALGEAGARVVLSARKAE-EL-------EEAAAHLEALGIDALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 357899999 5655444 554431 2457777766532 21 122344444454 44678898876542110
Q ss_pred -----CCCcccEEEEcCC
Q 041136 94 -----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 -----~~~~FD~IiFNFP 106 (214)
....+|.||.|-.
T Consensus 81 ~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 81 EETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHhCCCCEEEECCC
Confidence 1146899999843
No 281
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.82 E-value=62 Score=27.25 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=44.0
Q ss_pred CCCeEEEEecCch-hHHHHHHHHhC-CCCcEEEeec---CChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCC
Q 041136 18 NNQRILLVGEGDF-SFSDCLARAFG-SATNMVASSL---DSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SFS~sLa~~~~-~~~~l~ATs~---ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~ 91 (214)
.+++||+.|=+.+ +...++|+++. .+..|+.++. +........-+...+-.+.++..|..+ .+.+|.++.+...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 3578999995432 44444555432 2346776642 211000000001112234455667654 5688888765421
Q ss_pred CC------CCCcccEEEEcCC
Q 041136 92 TL------SQMKFDVIIFNFP 106 (214)
Q Consensus 92 ~~------~~~~FD~IiFNFP 106 (214)
.+ .....|.||.|--
T Consensus 85 ~~~~~~~~~~g~id~li~~ag 105 (256)
T PRK12859 85 ELLNKVTEQLGYPHILVNNAA 105 (256)
T ss_pred HHHHHHHHHcCCCcEEEECCC
Confidence 11 1235799998863
No 282
>PRK05785 hypothetical protein; Provisional
Probab=37.62 E-value=1.1e+02 Score=25.87 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++..+ ...|+.|-.+++.+ .+.+. . . ...-|+.+|. +..+
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~----~~v~gvD~S~~Ml~---~a~~~-------~-~-~~~~d~~~lp----~~d~ 109 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK----YYVVALDYAENMLK---MNLVA-------D-D-KVVGSFEALP----FRDK 109 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC----CEEEEECCCHHHHH---HHHhc-------c-c-eEEechhhCC----CCCC
Confidence 3478999998443344555877652 24567775454442 12211 1 1 1245676653 5678
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
+||.|+-+|-.
T Consensus 110 sfD~v~~~~~l 120 (226)
T PRK05785 110 SFDVVMSSFAL 120 (226)
T ss_pred CEEEEEecChh
Confidence 89999999843
No 283
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.37 E-value=64 Score=27.14 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|.. -+++|+.+ ..+.+|++++.+..+++ .+.++..|.. ..+.+|.++.+....+
T Consensus 7 ~~k~~lItGas~gI--G~aia~~l~~~G~~vv~~~~~~~~~~----------~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 7 NGKVAIITGCNTGL--GQGMAIGLAKAGADIVGVGVAEAPET----------QAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCCCEEEEecCchHHHH----------HHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 367899999 4444 44466553 23467887765432221 2334444543 4578899886543221
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.+|.|=
T Consensus 75 ~~~~~~~g~iD~lv~~a 91 (251)
T PRK12481 75 SQAVEVMGHIDILINNA 91 (251)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124689888773
No 284
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=37.11 E-value=45 Score=29.43 Aligned_cols=90 Identities=23% Similarity=0.445 Sum_probs=46.9
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhCC-----C--CcEEEeecCChHHHHhcCcc-HHHHHHHHHhCCCEEEEccccccCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFGS-----A--TNMVASSLDSERTLKTKHWT-SQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~~-----~--~~l~ATs~ds~~~l~~kY~~-a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
.++++|+|- |..=|.+..+...++. . .||.|-..|....+.+ |.. ..+.+..+-..+ -..+..+..+.
T Consensus 12 ~g~~vllv~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (284)
T TIGR00345 12 QGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEE-YRAKLVEQIKGNLPDG--DMLGDQLEGAA 88 (284)
T ss_pred CCCeEEEEECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHH-HHHHHHHHHhhhcccc--ccHHHHHhcCC
Confidence 467899988 5555555556444432 1 4677888888776653 432 222222211111 11111121121
Q ss_pred CCCC-------------CCC--CcccEEEEcCCCCCC
Q 041136 89 RHPT-------------LSQ--MKFDVIIFNFPHAGH 110 (214)
Q Consensus 89 ~~~~-------------~~~--~~FD~IiFNFPH~G~ 110 (214)
.-|. ... ..||+|||+-|=+|.
T Consensus 89 ~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtgh 125 (284)
T TIGR00345 89 LSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGH 125 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHH
Confidence 1122 112 569999999999985
No 285
>PRK08177 short chain dehydrogenase; Provisional
Probab=36.86 E-value=61 Score=26.58 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=40.1
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC----CC
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP----TL 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~----~~ 93 (214)
+++|+.| .|.+-.+ +++.+. .+.+|++++.+.+.. +.++.+. ++ ..+.+|.++.+... .+
T Consensus 2 k~vlItG~sg~iG~~--la~~l~~~G~~V~~~~r~~~~~---------~~~~~~~--~~-~~~~~D~~d~~~~~~~~~~~ 67 (225)
T PRK08177 2 RTALIIGASRGLGLG--LVDRLLERGWQVTATVRGPQQD---------TALQALP--GV-HIEKLDMNDPASLDQLLQRL 67 (225)
T ss_pred CEEEEeCCCchHHHH--HHHHHHhCCCEEEEEeCCCcch---------HHHHhcc--cc-ceEEcCCCCHHHHHHHHHHh
Confidence 4688998 6644333 444432 245788887764321 1122221 23 33456777654321 12
Q ss_pred CCCcccEEEEcCCCC
Q 041136 94 SQMKFDVIIFNFPHA 108 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~ 108 (214)
..+.+|.||.|-.-.
T Consensus 68 ~~~~id~vi~~ag~~ 82 (225)
T PRK08177 68 QGQRFDLLFVNAGIS 82 (225)
T ss_pred hcCCCCEEEEcCccc
Confidence 345799999986443
No 286
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=36.56 E-value=2.1e+02 Score=26.31 Aligned_cols=129 Identities=22% Similarity=0.362 Sum_probs=69.7
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+++||=|| +|=+||= +++. | +.. ++++|.....+..+ . -++.+- .........+-...|..
T Consensus 115 ~gk~VLDIGC~nGY~~fr--M~~~-G-A~~--ViGiDP~~lf~~QF---~-~i~~~lg~~~~~~~lplgvE~Lp~----- 179 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFR--MLGR-G-AKS--VIGIDPSPLFYLQF---E-AIKHFLGQDPPVFELPLGVEDLPN----- 179 (315)
T ss_pred CCCEEEEecCCCcHHHHH--Hhhc-C-CCE--EEEECCChHHHHHH---H-HHHHHhCCCccEEEcCcchhhccc-----
Confidence 678999999 7778886 3332 2 223 45677654433222 1 223332 11222222233444432
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE-EEec-CCC------C---C----Ccc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH-VTLR-DDH------P---Y----NQW 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~-VTl~-~~~------P---y----~~W 159 (214)
.+.||.|++ .|. -+|+.==-..+...+..|++||++. =||. +|. | | +.|
T Consensus 180 ~~~FDtVF~----MGV------------LYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~ 243 (315)
T PF08003_consen 180 LGAFDTVFS----MGV------------LYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW 243 (315)
T ss_pred cCCcCEEEE----eee------------hhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE
Confidence 467999997 353 1343333344556778899999974 3443 332 2 2 456
Q ss_pred cHh------hHHHhcCCEEEEEec
Q 041136 160 NVM------GLADKLGLVLKEKVE 177 (214)
Q Consensus 160 ~i~------~lA~~~gl~l~~~~~ 177 (214)
-|. ...+++|+.=.+.+.
T Consensus 244 FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 244 FIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred EeCCHHHHHHHHHHcCCceEEEec
Confidence 644 455678887666543
No 287
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.21 E-value=2.6e+02 Score=23.54 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=41.4
Q ss_pred CCCeEEEEecC---chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 18 NNQRILLVGEG---DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGeG---nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.++++|+.|=+ ..-.+ +|+.+. .+.+|+.++.....+ ...++-.++++ .+-...+.+|+++.+....+
T Consensus 6 ~~k~~lItGa~~s~GIG~a--ia~~la~~G~~v~~~~r~~~~~-----~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWG--IARSLHNAGAKLVFTYAGERLE-----KEVRELADTLE-GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHH--HHHHHHHCCCEEEEecCcccch-----HHHHHHHHHcC-CCceEEEecCCCCHHHHHHH
Confidence 35789999954 55444 555542 345777775532110 00111122222 12344677899876542111
Q ss_pred ------CCCcccEEEEcC
Q 041136 94 ------SQMKFDVIIFNF 105 (214)
Q Consensus 94 ------~~~~FD~IiFNF 105 (214)
.-.++|.+|.|-
T Consensus 78 ~~~~~~~~g~ld~lv~na 95 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCI 95 (257)
T ss_pred HHHHHHhCCCccEEEECc
Confidence 125789888773
No 288
>PRK06139 short chain dehydrogenase; Provisional
Probab=35.67 E-value=48 Score=29.77 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~- 93 (214)
.+++||+.|= |..-.+ +++.+. .+.+|++++.+.+ .+ ++-.+++++.|+.+ ...+|.++.+....+
T Consensus 6 ~~k~vlITGAs~GIG~a--ia~~la~~G~~Vvl~~R~~~-~l-------~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~ 75 (330)
T PRK06139 6 HGAVVVITGASSGIGQA--TAEAFARRGARLVLAARDEE-AL-------QAVAEECRALGAEVLVVPTDVTDADQVKALA 75 (330)
T ss_pred CCCEEEEcCCCCHHHHH--HHHHHHHCCCEEEEEECCHH-HH-------HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHH
Confidence 3578999994 444333 444431 2457888876532 22 22345566667654 456788865442111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
....+|.||.|=
T Consensus 76 ~~~~~~~g~iD~lVnnA 92 (330)
T PRK06139 76 TQAASFGGRIDVWVNNV 92 (330)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 124689988873
No 289
>PRK07074 short chain dehydrogenase; Provisional
Probab=35.49 E-value=50 Score=27.51 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=41.9
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-CC-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-LS- 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~~- 94 (214)
+++||+.| -|..-.+ |++.+. .+.+|++++.+... .+...+.+.. +....+.+|+++.+.... +.
T Consensus 2 ~k~ilItGat~~iG~~--la~~L~~~g~~v~~~~r~~~~--------~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~ 70 (257)
T PRK07074 2 KRTALVTGAAGGIGQA--LARRFLAAGDRVLALDIDAAA--------LAAFADALGD-ARFVPVACDLTDAASLAAALAN 70 (257)
T ss_pred CCEEEEECCcchHHHH--HHHHHHHCCCEEEEEeCCHHH--------HHHHHHHhcC-CceEEEEecCCCHHHHHHHHHH
Confidence 46799999 4554443 555432 24578888766432 1122333322 234567899987654211 11
Q ss_pred ----CCcccEEEEcC
Q 041136 95 ----QMKFDVIIFNF 105 (214)
Q Consensus 95 ----~~~FD~IiFNF 105 (214)
..++|.||+|-
T Consensus 71 ~~~~~~~~d~vi~~a 85 (257)
T PRK07074 71 AAAERGPVDVLVANA 85 (257)
T ss_pred HHHHcCCCCEEEECC
Confidence 13589888875
No 290
>PRK08862 short chain dehydrogenase; Provisional
Probab=35.34 E-value=2.6e+02 Score=23.25 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=44.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~--- 93 (214)
++++|+.|=+. -..+++++.+. .+.+|+.++.+. +.+ ++..+.++..|. .+.+.+|.++-++...+
T Consensus 5 ~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~-~~l-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 5 SSIILITSAGS-VLGRTISCHFARLGATLILCDQDQ-SAL-------KDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCH-HHH-------HHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 57899999444 44555665542 356888887754 222 223444554454 44567788775543221
Q ss_pred --CC-C-cccEEEEcC
Q 041136 94 --SQ-M-KFDVIIFNF 105 (214)
Q Consensus 94 --~~-~-~FD~IiFNF 105 (214)
+. . ++|.+|-|-
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 11 3 789888774
No 291
>PRK06114 short chain dehydrogenase; Provisional
Probab=35.30 E-value=92 Score=26.04 Aligned_cols=80 Identities=8% Similarity=0.095 Sum_probs=44.5
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|.. ..++|+.+. .+.+++.+...+++. ..+.++.|+..|. ...+.+|.++.+.-..+
T Consensus 7 ~~k~~lVtG~s~gI--G~~ia~~l~~~G~~v~~~~r~~~~~-------~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~ 77 (254)
T PRK06114 7 DGQVAFVTGAGSGI--GQRIAIGLAQAGADVALFDLRTDDG-------LAETAEHIEAAGRRAIQIAADVTSKADLRAAV 77 (254)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEeCCcchH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 357889998 3333 333554432 245788877655332 2233555665554 34577888875431110
Q ss_pred -----CCCcccEEEEcCC
Q 041136 94 -----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 -----~~~~FD~IiFNFP 106 (214)
.-.+.|.||.|--
T Consensus 78 ~~~~~~~g~id~li~~ag 95 (254)
T PRK06114 78 ARTEAELGALTLAVNAAG 95 (254)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1245899998754
No 292
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.19 E-value=2.9e+02 Score=23.63 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCCeEEEEecC---chhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEG---DFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeG---nFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+++.+|+.|=+ ..-.+ +|+.+ ..+.+|+.+..+.. .. +.++.+ ++.|..+.+.+|+++......
T Consensus 6 ~~k~~lVTGas~~~GIG~a--iA~~la~~Ga~V~~~~r~~~--~~-------~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWG--IAKQLAAQGAELAFTYQGEA--LG-------KRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHH--HHHHHHhCCCEEEEecCchH--HH-------HHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 35789999954 44443 33332 12457877765421 11 112333 233555667889987654211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.+.|.+|.|=
T Consensus 75 ~~~~~~~~~g~iD~lVnnA 93 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAI 93 (271)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 1 124689888774
No 293
>PRK12939 short chain dehydrogenase; Provisional
Probab=35.14 E-value=78 Score=25.97 Aligned_cols=79 Identities=11% Similarity=0.088 Sum_probs=44.2
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~ 93 (214)
-.+++||+.| .|...- +|++.+. .+.+|++++.+. +.+ .+..+.++..+. ...+-+|+++.+....+
T Consensus 5 ~~~~~vlItGa~g~iG~--~la~~l~~~G~~v~~~~r~~-~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 5 LAGKRALVTGAARGLGA--AFAEALAEAGATVAFNDGLA-AEA-------RELAAALEAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCCCEEEEeCCCChHHH--HHHHHHHHcCCEEEEEeCCH-HHH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 3468899999 455444 4666542 245788886543 221 222344555454 34567888875532111
Q ss_pred -C-----CCcccEEEEcC
Q 041136 94 -S-----QMKFDVIIFNF 105 (214)
Q Consensus 94 -~-----~~~FD~IiFNF 105 (214)
. ..+.|.||.|-
T Consensus 75 ~~~~~~~~~~id~vi~~a 92 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 1 14689988884
No 294
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.04 E-value=69 Score=26.34 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=44.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCC-CC
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPT-LS 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~-~~ 94 (214)
++++|+.| .|....+ |++.+ ..+.+|++++.+.... .+..+.++..+.. ..+.+|.++...... +.
T Consensus 7 ~~~vlVtG~sg~iG~~--l~~~L~~~G~~Vi~~~r~~~~~--------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRGIGRA--VAIALAKEGVNVGLLARTEENL--------KAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCchHHHH--HHHHHHHCCCEEEEEeCCHHHH--------HHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 47899999 5555444 55543 2345899988875421 1223444444543 457888887654211 11
Q ss_pred -----CCcccEEEEcCC
Q 041136 95 -----QMKFDVIIFNFP 106 (214)
Q Consensus 95 -----~~~FD~IiFNFP 106 (214)
-...|.||.|-.
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (239)
T PRK07666 77 QLKNELGSIDILINNAG 93 (239)
T ss_pred HHHHHcCCccEEEEcCc
Confidence 135798887753
No 295
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.93 E-value=1.8e+02 Score=27.27 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=39.3
Q ss_pred CCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++|+++|=|--..+.|.+ ...| ..+ |.+|..++. ......+.|++.|+.+..+.+.. + ...
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G--~~V--~~~d~~~~~-----~~~~~~~~l~~~gv~~~~~~~~~-~-------~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG--ARV--TVVDDGDDE-----RHRALAAILEALGATVRLGPGPT-L-------PED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEE--EEEeCCchh-----hhHHHHHHHHHcCCEEEECCCcc-c-------cCC
Confidence 5689999988765543221 1222 344 445533221 12233567888999999887665 1 133
Q ss_pred ccEEEE
Q 041136 98 FDVIIF 103 (214)
Q Consensus 98 FD~IiF 103 (214)
+|.||-
T Consensus 79 ~D~Vv~ 84 (480)
T PRK01438 79 TDLVVT 84 (480)
T ss_pred CCEEEE
Confidence 677774
No 296
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=34.77 E-value=52 Score=26.96 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=42.5
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC-C--
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT-L-- 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~-~-- 93 (214)
+++|+.| .|.+..+ ||+.+. .+.+++++..+..++ +.+.+..+...+. ..++.+|.++.+.-.. +
T Consensus 3 k~vlItG~s~~iG~~--la~~l~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 73 (245)
T PRK12824 3 KIALVTGAKRGIGSA--IARELLNDGYRVIATYFSGNDC-------AKDWFEEYGFTEDQVRLKELDVTDTEECAEALAE 73 (245)
T ss_pred CEEEEeCCCchHHHH--HHHHHHHcCCEEEEEeCCcHHH-------HHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4688888 6666555 555542 245788888775422 2222333333333 4567788887543111 1
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.-..+|.||.|=
T Consensus 74 ~~~~~~~id~vi~~a 88 (245)
T PRK12824 74 IEEEEGPVDILVNNA 88 (245)
T ss_pred HHHHcCCCCEEEECC
Confidence 123589888763
No 297
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=34.49 E-value=84 Score=32.51 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhH-HHhcCCEEEEEecCCCC
Q 041136 124 RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGL-ADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 124 ~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~l-A~~~gl~l~~~~~F~~~ 181 (214)
.-..|+..+|+.++++|+++|.+.+-..=.+|-..-.+.+. -.++||.+.+..|+..+
T Consensus 562 ~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~pv~TE 620 (875)
T COG1743 562 EFENLFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWPVRTE 620 (875)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccccccc
Confidence 34679999999999999999998555444444333345554 67899999996666544
No 298
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=34.37 E-value=1e+02 Score=28.83 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 18 NNQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
..++|++||-|+-..-.|.. ..++ ..+++.....+...+ |....-++.|++.|+.++.+..++.+.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G-~~~Vtlv~~~~~~~~----~~~~~~~~~~~~~GV~i~~~~~v~~i~ 338 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG-AESVTIVYRRGREEM----PASEEEVEHAKEEGVEFEWLAAPVEIL 338 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEeeecCcccC----CCCHHHHHHHHHCCCEEEecCCcEEEE
Confidence 57899999999876654332 2233 224444443332222 222333677888999999887666553
No 299
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.32 E-value=66 Score=26.57 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=43.9
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++||+.| -|..-.+ |++.+. .+..|++++..... .....+.++..+.. ..+.+|.++......+
T Consensus 4 ~~~vlItG~sg~iG~~--la~~l~~~g~~v~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 4 GKVALVTGAASGIGLE--IALALAKEGAKVVIADLNDEA--------AAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCEEEEECCCchHHHH--HHHHHHHCCCeEEEEeCCHHH--------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 46899999 5665544 655532 24578877665432 11223445544543 3566788865542111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
.....|.||.|=-
T Consensus 74 ~~~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 74 YAVETFGGVDILVNNAG 90 (258)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1136899998864
No 300
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=34.07 E-value=2.7e+02 Score=23.02 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|..-.+ +++.+. .+.+++.++.+.. . ..+..++++..+. ...+.+|.++.+.-..+
T Consensus 8 ~~k~~lItGas~giG~~--ia~~L~~~G~~vvl~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (254)
T PRK08085 8 AGKNILITGSAQGIGFL--LATGLAEYGAEIIINDITAE-R-------AELAVAKLRQEGIKAHAAPFNVTHKQEVEAAI 77 (254)
T ss_pred CCCEEEEECCCChHHHH--HHHHHHHcCCEEEEEcCCHH-H-------HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHH
Confidence 457899999 4544443 555432 2457888776532 1 2223455555554 34567888775432111
Q ss_pred -----CCCcccEEEEcCC
Q 041136 94 -----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 -----~~~~FD~IiFNFP 106 (214)
...++|.||.|--
T Consensus 78 ~~~~~~~~~id~vi~~ag 95 (254)
T PRK08085 78 EHIEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 1246899998864
No 301
>PRK06194 hypothetical protein; Provisional
Probab=34.06 E-value=74 Score=27.03 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCeEEEEecC-chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-C
Q 041136 19 NQRILLVGEG-DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVGeG-nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.|=+ ..-. +|++.+. .+.+|+++..+.+ . ..++.+.+...|.. ..+..|+++.+....+ .
T Consensus 6 ~k~vlVtGasggIG~--~la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 6 GKVAVITGAASGFGL--AFARIGAALGMKLVLADVQQD-A-------LDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCEEEEeCCccHHHH--HHHHHHHHCCCEEEEEeCChH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 4689999944 3333 3444431 2457888776532 1 23345556555654 4578888875442111 1
Q ss_pred -----CCcccEEEEcCCC
Q 041136 95 -----QMKFDVIIFNFPH 107 (214)
Q Consensus 95 -----~~~FD~IiFNFPH 107 (214)
....|.||.|--.
T Consensus 76 ~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 76 AALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1357887777443
No 302
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=33.98 E-value=76 Score=26.18 Aligned_cols=75 Identities=12% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| .|.. ..++++.+- .+.+|++++....+++ .+.++..+. ...+.+|+++......+
T Consensus 4 ~~k~vlItGas~gI--G~~ia~~l~~~G~~vi~~~r~~~~~~----------~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (248)
T TIGR01832 4 EGKVALVTGANTGL--GQGIAVGLAEAGADIVGAGRSEPSET----------QQQVEALGRRFLSLTADLSDIEAIKALV 71 (248)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEcCchHHHH----------HHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 367899999 4443 444666542 2457888876432221 223333343 45678899886542111
Q ss_pred -----CCCcccEEEEc
Q 041136 94 -----SQMKFDVIIFN 104 (214)
Q Consensus 94 -----~~~~FD~IiFN 104 (214)
.....|.||.|
T Consensus 72 ~~~~~~~~~~d~li~~ 87 (248)
T TIGR01832 72 DSAVEEFGHIDILVNN 87 (248)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 12468999877
No 303
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.91 E-value=1.3e+02 Score=24.04 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=38.8
Q ss_pred HHHHHhccCCCCEEEE-EecCCCCC--CcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 133 LKNGREMLGEGGEVHV-TLRDDHPY--NQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 133 f~Sa~~lL~~~G~i~V-Tl~~~~Py--~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
+--|...|..+|.|+| |-+.|.|. ..=.|.+.|..+||+...+..+... |-|-+
T Consensus 64 LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~~~v~~d-Wsg~r 120 (127)
T PF11253_consen 64 LVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKSCAVGDD-WSGTR 120 (127)
T ss_pred HHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeeeeccCCC-ccEEE
Confidence 3346677899999955 55777763 3456889999999999888777642 54443
No 304
>PRK09242 tropinone reductase; Provisional
Probab=33.80 E-value=95 Score=25.88 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--C-CEEEEccccccCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--G-CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g-~~Vl~~VDAt~L~~~~~ 92 (214)
.++++|++| -|..--+ +++.+. .+.+|++++.+.+. + .+..+.++.. + -...+.+|.++.+....
T Consensus 8 ~~k~~lItGa~~gIG~~--~a~~l~~~G~~v~~~~r~~~~-~-------~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (257)
T PRK09242 8 DGQTALITGASKGIGLA--IAREFLGLGADVLIVARDADA-L-------AQARDELAEEFPEREVHGLAADVSDDEDRRA 77 (257)
T ss_pred CCCEEEEeCCCchHHHH--HHHHHHHcCCEEEEEeCCHHH-H-------HHHHHHHHhhCCCCeEEEEECCCCCHHHHHH
Confidence 467899998 4544333 444432 24578988876432 2 2223344333 3 34566788887543211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.++|.||.|-
T Consensus 78 ~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 78 ILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 1 124689888775
No 305
>PRK08589 short chain dehydrogenase; Validated
Probab=33.09 E-value=3e+02 Score=23.26 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=43.5
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.| -|..- +++++.+. .+.+|++++.+ +.+ .+.++.+++.+. ...+.+|.++......+
T Consensus 6 ~k~vlItGas~gIG--~aia~~l~~~G~~vi~~~r~--~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 6 NKVAVITGASTGIG--QASAIALAQEGAYVLAVDIA--EAV-------SETVDKIKSNGGKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCEEEEECCCchHH--HHHHHHHHHCCCEEEEEeCc--HHH-------HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 56899999 44443 33555432 24688888766 222 234555555554 45677888875432111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
.....|.+|.|-
T Consensus 75 ~~~~~~g~id~li~~A 90 (272)
T PRK08589 75 EIKEQFGRVDVLFNNA 90 (272)
T ss_pred HHHHHcCCcCEEEECC
Confidence 124689888884
No 306
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.65 E-value=1.9e+02 Score=22.09 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=41.8
Q ss_pred CeEEEEecCchh---HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVGEGDFS---FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeGnFS---FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++||+|=.||-. .|-+|++++.. .++.+-|-=+.. . +-....++.|++.|+.+- +-=++.|.. ..-.
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~-~~~~v~SAG~~~--~---~~~p~a~~~l~e~Gid~~-~~~s~~l~~---~~~~ 70 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGA-GNIAVTSAGLEV--S---RVHPTAIEVMSEIGIDIS-GQTSKPLEN---FHPE 70 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcC-CCEEEEcCcCCC--C---CCCHHHHHHHHHhCCCcc-cCccccCCh---hHhc
Confidence 479999999999 88889988753 244443322221 1 112334677777665431 212333322 1234
Q ss_pred cccEEEEc
Q 041136 97 KFDVIIFN 104 (214)
Q Consensus 97 ~FD~IiFN 104 (214)
.||.||-.
T Consensus 71 ~~D~iitm 78 (126)
T TIGR02689 71 DYDVVISL 78 (126)
T ss_pred CCCEEEEe
Confidence 67888754
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=32.63 E-value=2.1e+02 Score=25.47 Aligned_cols=87 Identities=20% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCCeEEEEecCchh--HHHHHHHHh---CCCCcEEEeecCChHHHHhcCcc--HHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 18 NNQRILLVGEGDFS--FSDCLARAF---GSATNMVASSLDSERTLKTKHWT--SQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 18 ~~~~ILlVGeGnFS--FS~sLa~~~---~~~~~l~ATs~ds~~~l~~kY~~--a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
..++|++||-|.-. +|..|++.+ +...+|+... . +.+....+. +....+.|++.|+.++.+.-++.+...
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~--~-~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~ 220 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA--G-ASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG 220 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe--C-CcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC
Confidence 35699999988544 444455433 2112444332 2 222222221 234567788999999998666655432
Q ss_pred C----CCCCCcccEEEEcCCC
Q 041136 91 P----TLSQMKFDVIIFNFPH 107 (214)
Q Consensus 91 ~----~~~~~~FD~IiFNFPH 107 (214)
. .-....+|.||+--+.
T Consensus 221 ~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 221 ALILADGRTLPADAILWATGA 241 (364)
T ss_pred eEEeCCCCEEecCEEEEccCC
Confidence 1 1123568999985543
No 308
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.56 E-value=1.3e+02 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEec-CchhHHH-HHHHHhCCCCcEEEee
Q 041136 15 HYTNNQRILLVGE-GDFSFSD-CLARAFGSATNMVASS 50 (214)
Q Consensus 15 ~~~~~~~ILlVGe-GnFSFS~-sLa~~~~~~~~l~ATs 50 (214)
....+.+||+.|- |...-+. .+|++++ .++++|+
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~ 209 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVA 209 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEe
Confidence 3557899999996 8887764 4577775 4678776
No 309
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.42 E-value=2.9e+02 Score=22.83 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=42.3
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCc-EEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATN-MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~-l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~ 93 (214)
.+++||++|= |.. ..+|++.+. .+.. |++++.+... + ...++.++..+..+ .+.+|.++.+....+
T Consensus 5 ~~k~vlItGa~g~i--G~~la~~l~~~G~~~V~~~~r~~~~-~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (260)
T PRK06198 5 DGKVALVTGGTQGL--GAAIARAFAERGAAGLVICGRNAEK-G-------EAQAAELEALGAKAVFVQADLSDVEDCRRV 74 (260)
T ss_pred CCcEEEEeCCCchH--HHHHHHHHHHCCCCeEEEEcCCHHH-H-------HHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3578999994 443 334555442 2345 8888776432 1 22345555556543 567898875432111
Q ss_pred -C-----CCcccEEEEc
Q 041136 94 -S-----QMKFDVIIFN 104 (214)
Q Consensus 94 -~-----~~~FD~IiFN 104 (214)
. -...|.||.|
T Consensus 75 ~~~~~~~~g~id~li~~ 91 (260)
T PRK06198 75 VAAADEAFGRLDALVNA 91 (260)
T ss_pred HHHHHHHhCCCCEEEEC
Confidence 0 1357888766
No 310
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=32.14 E-value=97 Score=28.41 Aligned_cols=102 Identities=15% Similarity=0.248 Sum_probs=65.5
Q ss_pred CCcEEEeecCChHHHHhcCccHHHHH-------HHHHhCCCEEEEccccccCCC-CCC------CCCCcccEEEEcCCCC
Q 041136 43 ATNMVASSLDSERTLKTKHWTSQAHL-------QSLWSRGCLVLHGVNVHTMDR-HPT------LSQMKFDVIIFNFPHA 108 (214)
Q Consensus 43 ~~~l~ATs~ds~~~l~~kY~~a~~ni-------~~L~~~g~~Vl~~VDAt~L~~-~~~------~~~~~FD~IiFNFPH~ 108 (214)
+.++..-++--.++|.++||++-+.+ ++++..|-.-.|.|-....-. .|. +.-+.+||-+||-
T Consensus 217 G~t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~heYiE~~ge~h~H~v~~~p~v~~~p~~~e~~qiR~N~YDRAvfnt--- 293 (371)
T KOG3889|consen 217 GDTVLVDGFYCAEKLRNESPEDFEILCNVKISHEYIEGSGESHIHSVSLEPPVIERPSFGEITQIRFNPYDRAVFNT--- 293 (371)
T ss_pred CceEEEehHHHHHHHHhhChHhhhHhhcCccchhhhcCCCcccceeeccCCceEecCCCCceEEEEecccchhhhcc---
Confidence 45677777777899999999875543 455655555555553322111 122 2235677777763
Q ss_pred CCCCCCCcccHHHHHHhHHHHHHHHHHHHhcc----CCCCEEEEEecCCCC--CCcccHh
Q 041136 109 GHSPPLSEQDTNLIKRHKNLLEAFLKNGREML----GEGGEVHVTLRDDHP--YNQWNVM 162 (214)
Q Consensus 109 G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL----~~~G~i~VTl~~~~P--y~~W~i~ 162 (214)
.++.-+..|+.+-++|+ .|.-++.|.|+-|.- .+.|.|.
T Consensus 294 ---------------~p~ae~~~fY~a~r~l~~i~r~p~n~~~ikL~PGsvifiDNwRvL 338 (371)
T KOG3889|consen 294 ---------------LPAAETIKFYEAYRKLSKICRNPDNSIEIKLRPGSVIFIDNWRVL 338 (371)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHhcCccceEEEEecCceEEEEeceeEe
Confidence 24556778888887775 478899999998873 5677653
No 311
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=32.08 E-value=87 Score=31.56 Aligned_cols=68 Identities=18% Similarity=0.294 Sum_probs=46.1
Q ss_pred CCCCeEEEEecCch-----hHHHHHHHHhCCCCcEEEe------ecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccc
Q 041136 17 TNNQRILLVGEGDF-----SFSDCLARAFGSATNMVAS------SLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVH 85 (214)
Q Consensus 17 ~~~~~ILlVGeGnF-----SFS~sLa~~~~~~~~l~AT------s~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt 85 (214)
-+..+-.++|||++ +=+.|||-+++.+ +||+- |+|..-.+ .-.+...+..++.|=.|+..+|-.
T Consensus 147 vdh~tYvl~GDGclmEGvs~EA~slAG~l~L~-kLIvlyD~N~IsiDG~~~~----~f~ed~~~RfeAyGW~vi~~~DG~ 221 (663)
T COG0021 147 VDHYTYVLVGDGCLMEGVSHEAASLAGHLKLG-KLIVLYDSNDISIDGDTSL----SFTEDVAKRFEAYGWNVIRVIDGH 221 (663)
T ss_pred ccceEEEEecCchHhcccHHHHHHHHhhcCCC-cEEEEEeCCCceeccCccc----ccchhHHHHHHhcCCeEEEecCCC
Confidence 35677899999987 4477899998753 67764 33332221 124555677888999999888877
Q ss_pred cCCC
Q 041136 86 TMDR 89 (214)
Q Consensus 86 ~L~~ 89 (214)
+++.
T Consensus 222 D~e~ 225 (663)
T COG0021 222 DLEA 225 (663)
T ss_pred CHHH
Confidence 5543
No 312
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=31.95 E-value=96 Score=22.68 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEEecCchhHHHHHHHHhCCCC-cEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 22 ILLVGEGDFSFSDCLARAFGSAT-NMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 22 ILlVGeGnFSFS~sLa~~~~~~~-~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
|+++|=|.++- .|++.+.... .++....|.+ .++.+++.|..+++| |+++........-...|.
T Consensus 1 vvI~G~g~~~~--~i~~~L~~~~~~vvvid~d~~------------~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGR--EIAEQLKEGGIDVVVIDRDPE------------RVEELREEGVEVIYG-DATDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHH--HHHHHHHHTTSEEEEEESSHH------------HHHHHHHTTSEEEES--TTSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHH--HHHHHHHhCCCEEEEEECCcH------------HHHHHHhcccccccc-cchhhhHHhhcCccccCE
Confidence 68999996554 4777764322 4555544432 366778888887774 777655432334467888
Q ss_pred EEEcCC
Q 041136 101 IIFNFP 106 (214)
Q Consensus 101 IiFNFP 106 (214)
||---|
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 887666
No 313
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=31.94 E-value=1.4e+02 Score=23.96 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=69.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...++|=+|.+==.||..+.+..+....++|..+-..+.+. ++..++ ......-. ...+.+...-...+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~--------~~~~i~-~d~~~~~~--~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQ--------NVSFIQ-GDITNPEN--IKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-T--------TEEBTT-GGGEEEEH--SHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccccc--------ceeeee-cccchhhH--HHhhhhhccccccC
Confidence 45899999976666677788776445578887766552221 111111 01111111 11222211112368
Q ss_pred ccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 98 FDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 98 FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
||.|+-+- |.+.+. .+.+. ....+|+..-+.-|..+|++||.+.+.+..+... . .+....+.
T Consensus 92 ~dlv~~D~~~~~~g~---~~~d~---~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~-~~~~~l~~ 154 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD---RNIDE---FISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-E-ELIYLLKR 154 (181)
T ss_dssp ESEEEE-------SS---HHSSH---HHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-H-HHHHHHHH
T ss_pred cceeccccccCCCCc---hhhHH---HHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-H-HHHHHHHh
Confidence 99999988 666542 12221 1244677777778999999999998888886643 4 55554443
No 314
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=31.92 E-value=56 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCCeEEEEecCchhHHHH-H--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSDC-L--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~s-L--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||.|-++.. | +..++ .+++...++..
T Consensus 66 ~~~vv~i~GDG~f~m~~~eL~ta~~~~--l~vi~vV~NN~ 103 (177)
T cd02010 66 DRKVVAVSGDGGFMMNSQELETAVRLK--IPLVVLIWNDN 103 (177)
T ss_pred CCcEEEEEcchHHHhHHHHHHHHHHHC--CCeEEEEEECC
Confidence 456789999999988752 2 33443 46777777653
No 315
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.92 E-value=3.2e+02 Score=23.18 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
.++||+.| -|..-.+ +|+.+. .+.+|++++.+.+. ++.|...++. .+.+|.++......+
T Consensus 4 ~k~vlItGasggiG~~--la~~l~~~G~~Vi~~~r~~~~------------~~~l~~~~~~-~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 4 KRSILITGCSSGIGAY--CARALQSDGWRVFATCRKEED------------VAALEAEGLE-AFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CCEEEEeCCCcHHHHH--HHHHHHHCCCEEEEEECCHHH------------HHHHHHCCce-EEEccCCCHHHHHHHHHH
Confidence 46899999 4555444 555432 34689988876421 2334444554 456788775432111
Q ss_pred ----CCCcccEEEEc
Q 041136 94 ----SQMKFDVIIFN 104 (214)
Q Consensus 94 ----~~~~FD~IiFN 104 (214)
.....|.||.|
T Consensus 69 ~~~~~~g~id~li~~ 83 (277)
T PRK05993 69 VLELSGGRLDALFNN 83 (277)
T ss_pred HHHHcCCCccEEEEC
Confidence 12468988877
No 316
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.69 E-value=66 Score=26.30 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=43.9
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEe-ecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVAS-SLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~AT-s~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++||++| .|..-.+ |++.+. .+..++++ +.+... ..+..+.++..+. ...+.+|.++.+....+
T Consensus 5 ~~~ilI~Gasg~iG~~--la~~l~~~g~~v~~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 5 GKVAIVTGASGGIGRA--IAELLAKEGAKVVIAYDINEEA--------AQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CCEEEEeCCCcHHHHH--HHHHHHHCCCEEEEEcCCCHHH--------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 46899998 5555444 544431 24567777 555322 1223344444443 45677898876642111
Q ss_pred C-----CCcccEEEEcCCCC
Q 041136 94 S-----QMKFDVIIFNFPHA 108 (214)
Q Consensus 94 ~-----~~~FD~IiFNFPH~ 108 (214)
. -..+|.||+|-...
T Consensus 75 ~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 75 EQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHhCCCCEEEECCCcC
Confidence 1 12689999886544
No 317
>PRK07831 short chain dehydrogenase; Provisional
Probab=31.55 E-value=87 Score=26.25 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=43.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CC--CEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g--~~Vl~~VDAt~L~~~~~ 92 (214)
..++++|+.|=...-...++++.+. .+.+|+++..+.. .+ .+..+.+++ .| ....+.+|.++.+....
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER-RL-------GETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 3468999999633333444555431 2456887765432 11 122344443 33 24467788887543211
Q ss_pred C------CCCcccEEEEcCC
Q 041136 93 L------SQMKFDVIIFNFP 106 (214)
Q Consensus 93 ~------~~~~FD~IiFNFP 106 (214)
+ ...+.|.||.|--
T Consensus 87 ~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 1 1146898888764
No 318
>PRK06138 short chain dehydrogenase; Provisional
Probab=31.32 E-value=62 Score=26.69 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=41.3
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC-CC
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT-LS 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~-~~ 94 (214)
++++|+.| .|..-.+ |++.+. .+.++++++.+.+. + .+..+.++ .+. ...+.+|.++...-.. +.
T Consensus 5 ~k~~lItG~sg~iG~~--la~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 5 GRVAIVTGAGSGIGRA--TAKLFAREGARVVVADRDAEA-A-------ERVAAAIA-AGGRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred CcEEEEeCCCchHHHH--HHHHHHHCCCeEEEecCCHHH-H-------HHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHH
Confidence 56889998 5665555 555432 24578888866422 1 12233333 343 4567788887543211 10
Q ss_pred -----CCcccEEEEc
Q 041136 95 -----QMKFDVIIFN 104 (214)
Q Consensus 95 -----~~~FD~IiFN 104 (214)
-.++|.||.|
T Consensus 74 ~i~~~~~~id~vi~~ 88 (252)
T PRK06138 74 FVAARWGRLDVLVNN 88 (252)
T ss_pred HHHHHcCCCCEEEEC
Confidence 1368977765
No 319
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.25 E-value=66 Score=26.69 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT-L 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~-~ 93 (214)
.+++||+.| .|....+ |++.+. .+.+|+.++.+.. . .++..+.++..+. ...+.+|.++.+.-.. +
T Consensus 4 ~~k~vlItGa~~~IG~~--la~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRT--LAVRAARAGADVVLAARTAE-R-------LDEVAAEIDDLGRRALAVPTDITDEDQCANLV 73 (258)
T ss_pred CCCEEEEECCCCcHHHH--HHHHHHHcCCEEEEEeCCHH-H-------HHHHHHHHHHhCCceEEEecCCCCHHHHHHHH
Confidence 568899999 5555444 555532 3457888776532 2 1222344554443 4567888886543110 0
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-...|.||.|=
T Consensus 74 ~~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 74 ALALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHHcCCccEEEECC
Confidence 114589888874
No 320
>PRK09072 short chain dehydrogenase; Provisional
Probab=31.20 E-value=3.1e+02 Score=22.84 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
+++||+.| -|..-.+ |++.+ ..+..|++++.+... + .+...+++..+-...+.+|.++.+....+
T Consensus 5 ~~~vlItG~s~~iG~~--ia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 5 DKRVLLTGASGGIGQA--LAEALAAAGARLLLVGRNAEK-L-------EALAARLPYPGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCEEEEECCCchHHHH--HHHHHHHCCCEEEEEECCHHH-H-------HHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 56899998 5655444 44443 124578888876422 1 11223332223344567888876542111
Q ss_pred --CCCcccEEEEcCC
Q 041136 94 --SQMKFDVIIFNFP 106 (214)
Q Consensus 94 --~~~~FD~IiFNFP 106 (214)
.....|.||.|--
T Consensus 75 ~~~~~~id~lv~~ag 89 (263)
T PRK09072 75 AREMGGINVLINNAG 89 (263)
T ss_pred HHhcCCCCEEEECCC
Confidence 1246899998853
No 321
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=31.11 E-value=1.1e+02 Score=30.37 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=40.2
Q ss_pred CCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 17 TNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
..+++|++||-||-..-.+- +..++ +.+++.....+...+ |....-++.+++.|+.++++...+.+.
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~~a~r~g-a~~Vt~i~~~~~~~~----~~~~~e~~~~~~~Gv~~~~~~~~~~i~ 533 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVRTALRHG-ASNVTCAYRRDEANM----PGSKKEVKNAREEGANFEFNVQPVALE 533 (654)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcC-CCeEEEeEecCCCCC----CCCHHHHHHHHHcCCeEEeccCcEEEE
Confidence 35689999999987655432 33343 224544333222221 333344677888999999987776653
No 322
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.94 E-value=3.3e+02 Score=23.01 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCC-EEEEccccccCCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGC-LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~-~Vl~~VDAt~L~~~~~~ 93 (214)
.++++|+.|= |.. .+++|+.+- .+.+|++++.+.+. + ++..+.|+. .+. ...+.+|+++......+
T Consensus 7 ~~k~~lItGas~gI--G~aia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 7 SGKLAFTTASSKGI--GFGVARVLARAGADVILLSRNEEN-L-------KKAREKIKSESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CCCEEEEeCCCCcH--HHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 3578899984 433 344555432 24588888876432 2 222333433 233 44678899876542111
Q ss_pred -----CCCcccEEEEc
Q 041136 94 -----SQMKFDVIIFN 104 (214)
Q Consensus 94 -----~~~~FD~IiFN 104 (214)
.-...|.+|.|
T Consensus 77 ~~~~~~~g~iD~lv~n 92 (263)
T PRK08339 77 VKELKNIGEPDIFFFS 92 (263)
T ss_pred HHHHHhhCCCcEEEEC
Confidence 12468988877
No 323
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=30.77 E-value=58 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=17.1
Q ss_pred CCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCC
Q 041136 19 NQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds 53 (214)
...|+++|||.|=++ ..|........+++.-.++.
T Consensus 69 ~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN 104 (175)
T cd02009 69 KPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINN 104 (175)
T ss_pred CCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEEC
Confidence 445666666666664 22322222234455555554
No 324
>PRK10126 tyrosine phosphatase; Provisional
Probab=30.56 E-value=1.2e+02 Score=23.99 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=43.6
Q ss_pred CeEEEEecCchh---HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVGEGDFS---FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeGnFS---FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+||+|--||-. .|-+|++++.....+..-+.... . .-|-....++.|++.|+.+ -+-=++.|.. ..-.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~~~~v~SAG~~~~--~--g~~~~~~a~~~l~~~Gid~-~~h~sr~lt~---~~~~ 74 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGAL--V--GKGADPTAISVAAEHQLSL-EGHCARQISR---RLCR 74 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcCCeEEEeeeccCC--C--CCCCCHHHHHHHHHcCCCc-CCCccccCCH---HHhc
Confidence 589999999999 88889988754333333333221 0 1122344577888766542 1222333322 1234
Q ss_pred cccEEEEc
Q 041136 97 KFDVIIFN 104 (214)
Q Consensus 97 ~FD~IiFN 104 (214)
.||.||-.
T Consensus 75 ~~DlIl~M 82 (147)
T PRK10126 75 NYDLILTM 82 (147)
T ss_pred cCCEEEEC
Confidence 68999864
No 325
>PRK09291 short chain dehydrogenase; Provisional
Probab=30.46 E-value=79 Score=26.18 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=39.5
Q ss_pred CeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++||+.| -|.+-. ++++.+ ..+.++++++.+.... .+..+.....+. ....-.|.++..........
T Consensus 3 ~~vlVtGasg~iG~--~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 3 KTILITGAGSGFGR--EVALRLARKGHNVIAGVQIAPQV--------TALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CEEEEeCCCCHHHH--HHHHHHHHCCCEEEEEeCCHHHH--------HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 5789999 565544 355553 2356899988764321 111122223332 23345677765432112223
Q ss_pred cccEEEEc
Q 041136 97 KFDVIIFN 104 (214)
Q Consensus 97 ~FD~IiFN 104 (214)
..|.||.|
T Consensus 73 ~id~vi~~ 80 (257)
T PRK09291 73 DVDVLLNN 80 (257)
T ss_pred CCCEEEEC
Confidence 68998887
No 326
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=30.31 E-value=1.2e+02 Score=25.14 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|.. ..++++.+- .+.+|+.++.+.. .+ .+..+.++..|. ...+..|+++.+....+
T Consensus 9 ~~k~vlItGa~g~i--G~~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 9 TGRRALVTGSSQGI--GYALAEGLAQAGAEVILNGRDPA-KL-------AAAAESLKGQGLSAHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCEEEEECCcchH--HHHHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhcCceEEEEEccCCCHHHHHHHH
Confidence 367899999 4544 444666542 3457888776542 22 122344555454 34567788875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.....|.||.|-
T Consensus 79 ~~~~~~~~~~d~li~~a 95 (255)
T PRK07523 79 DAFEAEIGPIDILVNNA 95 (255)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 124588888774
No 327
>PLN02253 xanthoxin dehydrogenase
Probab=30.31 E-value=75 Score=26.94 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=42.9
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.++++|+.| -|. ...+|++.+. .+.+|+++..+.+. ..+..+.+....-...+.+|.++.+....+ .
T Consensus 17 ~~k~~lItGas~g--IG~~la~~l~~~G~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (280)
T PLN02253 17 LGKVALVTGGATG--IGESIVRLFHKHGAKVCIVDLQDDL--------GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVD 86 (280)
T ss_pred CCCEEEEECCCch--HHHHHHHHHHHcCCEEEEEeCCHHH--------HHHHHHHhcCCCceEEEEeecCCHHHHHHHHH
Confidence 357899999 443 4455666542 34678887665321 122233443222345677888876542111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
..+.|.||.|=
T Consensus 87 ~~~~~~g~id~li~~A 102 (280)
T PLN02253 87 FTVDKFGTLDIMVNNA 102 (280)
T ss_pred HHHHHhCCCCEEEECC
Confidence 14689988874
No 328
>PRK08265 short chain dehydrogenase; Provisional
Probab=30.26 E-value=3.3e+02 Score=22.82 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=40.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
.++++|+.| -|.. .+++++.+. .+.+|++++.+.+. + ++..+.+ .+....+.+|+++.+....+
T Consensus 5 ~~k~vlItGas~gI--G~~ia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 5 AGKVAIVTGGATLI--GAAVARALVAAGARVAIVDIDADN-G-------AAVAASL--GERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCCEEEEECCCChH--HHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHh--CCeeEEEEecCCCHHHHHHHHH
Confidence 357899999 3443 344555542 24588888776421 1 1112222 12234567788875542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
...+.|.+|.|-
T Consensus 73 ~~~~~~g~id~lv~~a 88 (261)
T PRK08265 73 TVVARFGRVDILVNLA 88 (261)
T ss_pred HHHHHhCCCCEEEECC
Confidence 124689988874
No 329
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=30.20 E-value=88 Score=33.19 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHH-----------HhcCccHHHHHHHHHhCCCEEEEccc
Q 041136 17 TNNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTL-----------KTKHWTSQAHLQSLWSRGCLVLHGVN 83 (214)
Q Consensus 17 ~~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l-----------~~kY~~a~~ni~~L~~~g~~Vl~~VD 83 (214)
...++|++||=| .+|-|..|++. ..-.|.+|..+.+ .-........++.+++.|+.+..|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~ 611 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCS 611 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCce
Q ss_pred c-ccCCCCCCCCCCcccEEE
Q 041136 84 V-HTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 84 A-t~L~~~~~~~~~~FD~Ii 102 (214)
+ ..+.. +....||.||
T Consensus 612 Vdi~le~---L~~~gYDaVI 628 (1019)
T PRK09853 612 PDLTVEQ---LKNEGYDYVV 628 (1019)
T ss_pred eEEEhhh---heeccCCEEE
No 330
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.19 E-value=55 Score=30.49 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=20.3
Q ss_pred CCCCCCeEEEEecCchhHHHH--HHHHhCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDC--LARAFGS 42 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~s--La~~~~~ 42 (214)
++-..+++.++||++..++++ |++.+|-
T Consensus 297 ~~l~gkrv~i~g~~~~~~~l~~~L~~elG~ 326 (430)
T cd01981 297 QNLTGKRAFVFGDATHVAAATRILAREMGF 326 (430)
T ss_pred ccccCCeEEEEcChHHHHHHHHHHHHHcCC
Confidence 455689999999998777654 4556663
No 331
>PRK07774 short chain dehydrogenase; Provisional
Probab=30.09 E-value=78 Score=26.11 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=44.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|..-.+ +++++ ..+.+|+.++.+... + ....+.++..+ ....+.+|.++......+
T Consensus 5 ~~k~vlItGasg~iG~~--la~~l~~~g~~vi~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQA--YAEALAREGASVVVADINAEG-A-------ERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 357899999 4655444 55543 124578888766322 1 11223344333 345678898876542111
Q ss_pred -----CCCcccEEEEcCCCC
Q 041136 94 -----SQMKFDVIIFNFPHA 108 (214)
Q Consensus 94 -----~~~~FD~IiFNFPH~ 108 (214)
.....|.||.|=.-.
T Consensus 75 ~~~~~~~~~id~vi~~ag~~ 94 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHHhCCCCEEEECCCCc
Confidence 013589888776543
No 332
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.96 E-value=1.4e+02 Score=26.23 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=22.1
Q ss_pred CCCCCCeEEEEecCchhH-HHHHHHHhCCCCc-EEEeec
Q 041136 15 HYTNNQRILLVGEGDFSF-SDCLARAFGSATN-MVASSL 51 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~-l~ATs~ 51 (214)
....+.+||+.|.|.+.- +..||+++| .. +++|+-
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~ 195 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDI 195 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECC
Confidence 346788999988765433 344577775 34 666643
No 333
>PLN00016 RNA-binding protein; Provisional
Probab=29.89 E-value=1.4e+02 Score=26.92 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=43.2
Q ss_pred CCCeEEEE----e-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 18 NNQRILLV----G-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlV----G-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
..++||++ | -|-.-.. |++.+ ..+..|++.+.+....-.-+. ........|...|+.++.+ |.+++...
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~--lv~~L~~~G~~V~~l~R~~~~~~~~~~-~~~~~~~~l~~~~v~~v~~-D~~d~~~~- 125 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFY--LAKELVKAGHEVTLFTRGKEPSQKMKK-EPFSRFSELSSAGVKTVWG-DPADVKSK- 125 (378)
T ss_pred ccceEEEEeccCCCceeEhHH--HHHHHHHCCCEEEEEecCCcchhhhcc-CchhhhhHhhhcCceEEEe-cHHHHHhh-
Confidence 44689999 7 6755444 33332 224678888876543111111 1122344565566665444 66665432
Q ss_pred CCCCCcccEEEEc
Q 041136 92 TLSQMKFDVIIFN 104 (214)
Q Consensus 92 ~~~~~~FD~IiFN 104 (214)
+....+|.||-+
T Consensus 126 -~~~~~~d~Vi~~ 137 (378)
T PLN00016 126 -VAGAGFDVVYDN 137 (378)
T ss_pred -hccCCccEEEeC
Confidence 334568888743
No 334
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=29.77 E-value=53 Score=27.42 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCCeEEEEecCchhHHHH-H--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSDC-L--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~s-L--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||.|-++.. | |.+++ .+++...++..
T Consensus 66 ~~~vv~i~GDGsf~m~~~eL~Ta~~~~--lpv~ivV~NN~ 103 (205)
T cd02003 66 DREVYVLVGDGSYLMLHSEIVTAVQEG--LKIIIVLFDNH 103 (205)
T ss_pred CCeEEEEEccchhhccHHHHHHHHHcC--CCCEEEEEECC
Confidence 345688999998888642 2 33443 46777777763
No 335
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=29.68 E-value=1.2e+02 Score=25.41 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=43.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~-- 93 (214)
.++++|++|=+. -...++++.+. .+.+++.++....+. .....+.++..+..+ .+.+|+++......+
T Consensus 6 ~~k~~lItGa~~-gIG~~ia~~l~~~G~~vvi~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 77 (261)
T PRK08936 6 EGKVVVITGGST-GLGRAMAVRFGKEKAKVVINYRSDEEE-------ANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQ 77 (261)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCCHHH-------HHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHH
Confidence 357899998333 22344554432 235677776644332 223355566556544 577888876542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
...+.|.||.|-
T Consensus 78 ~~~~~~g~id~lv~~a 93 (261)
T PRK08936 78 TAVKEFGTLDVMINNA 93 (261)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689888774
No 336
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=29.65 E-value=62 Score=31.32 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=23.9
Q ss_pred CCCeEEEEecCchhHH---HHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFS---DCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS---~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|.|+ +.-|..++ .+++.-.++..
T Consensus 442 ~~~vv~i~GDGsf~m~~~eL~ta~r~~--lpi~ivV~NN~ 479 (571)
T PRK07710 442 DETVVAIVGDGGFQMTLQELSVIKELS--LPVKVVILNNE 479 (571)
T ss_pred CCcEEEEEcchHHhhhHHHHHHHHHhC--CCeEEEEEECc
Confidence 4567899999999997 33355565 35666666653
No 337
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.60 E-value=3.5e+02 Score=22.86 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCCeEEEEec---CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGE---GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGe---GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.|= +..-. ++|+.+. .+.+|+.+...... .+.++++. +.+..+.+.+|+++-+....
T Consensus 5 ~~k~vlItGas~~~GIG~--a~a~~l~~~G~~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 73 (260)
T PRK06997 5 AGKRILITGLLSNRSIAY--GIAKACKREGAELAFTYVGDRF---------KDRITEFAAEFGSDLVFPCDVASDEQIDA 73 (260)
T ss_pred CCcEEEEeCCCCCCcHHH--HHHHHHHHCCCeEEEEccchHH---------HHHHHHHHHhcCCcceeeccCCCHHHHHH
Confidence 4678999993 33333 3544432 24577776443211 11233332 23444567889887654211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.++|.+|.|=
T Consensus 74 ~~~~~~~~~g~iD~lvnnA 92 (260)
T PRK06997 74 LFASLGQHWDGLDGLVHSI 92 (260)
T ss_pred HHHHHHHHhCCCcEEEEcc
Confidence 1 125799999984
No 338
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.58 E-value=94 Score=25.99 Aligned_cols=77 Identities=10% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|..-.+ +++.+. .+.+++.++.+.. +. +..+.+...+. ...+.+|+++......+
T Consensus 14 ~~k~vlItGas~gIG~~--ia~~l~~~G~~v~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 82 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQG--YAVALAKAGADIIITTHGTN--WD-------ETRRLIEKEGRKVTFVQVDLTKPESAEKVV 82 (258)
T ss_pred CCCEEEEeCCCchHHHH--HHHHHHHCCCEEEEEeCCcH--HH-------HHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 468899999 5555444 555542 3457777766521 11 11222333333 45677898875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.....|.||.|-
T Consensus 83 ~~~~~~~g~id~li~~a 99 (258)
T PRK06935 83 KEALEEFGKIDILVNNA 99 (258)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 123689988774
No 339
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.50 E-value=1.1e+02 Score=25.80 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCeEEEEecC---chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEG---DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeG---nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~ 92 (214)
.++.+|+.|=+ ..-. ++|+.+- .+.+|+.+..+... .+.++++.+ .+..+.+.+|+++.+....
T Consensus 9 ~~k~~lItGas~g~GIG~--a~a~~la~~G~~v~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAW--GCARAFRALGAELAVTYLNDKA---------RPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHH--HHHHHHHHcCCEEEEEeCChhh---------HHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 35788999943 3433 3444431 24578887765321 112233321 2334567889987654321
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.+.|.+|.|=
T Consensus 78 ~~~~~~~~~g~ld~lv~nA 96 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSI 96 (258)
T ss_pred HHHHHHHHcCCCCEEEEcC
Confidence 1 124689999884
No 340
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.50 E-value=44 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=17.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEE
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVA 48 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~A 48 (214)
+.=||+-||+||.=...-++..|..+.+++
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 445677789999998888888875444444
No 341
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=29.49 E-value=1e+02 Score=29.76 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=36.8
Q ss_pred CCCCCC---cccHhhHHHhcCCEEEE-E-ec-----CCCCCCCCCccccCCCcccCccccCCccEEEEEEec
Q 041136 152 DDHPYN---QWNVMGLADKLGLVLKE-K-VE-----FLKQDFPGYHNKRGGGVKSNKKFPLKECFTFKFCLA 213 (214)
Q Consensus 152 ~~~Py~---~W~i~~lA~~~gl~l~~-~-~~-----F~~~~yPgY~~~rt~~~~~~~~f~~~~~~t~~F~~~ 213 (214)
-|+|.+ .=.|.++|+++|+.+.. . .- |-.+.-+||..+. .+.-...-|...++.||.|.|.
T Consensus 191 GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~-i~ei~~e~~s~aD~~t~S~~K~ 261 (460)
T PRK13237 191 GGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKS-IKEIVHEMFSYADGCTMSGKKD 261 (460)
T ss_pred CCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCc-HhHHhhhccCcCcEEEEeCCCC
Confidence 378864 34467799999998854 2 22 2223347787532 2211233467788999998765
No 342
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.36 E-value=60 Score=29.34 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++..+| ++|.|.+|-. |++.+++.. ...++|...+..+ .+.+.++. .+-..++.-|..++.....-.-
T Consensus 19 pg~~vlD~TlG~GGhS~~--il~~~~~~g--~VigiD~D~~al~---~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRA--ILERLGPKG--RLIAIDRDPDAIA---AAKDRLKP---FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCEEEEeCcCChHHHHH--HHHhCCCCC--EEEEEcCCHHHHH---HHHHhhcc---CCcEEEEeCCHHHHHHHHHcCC
Confidence 344554 5667776655 888875333 4556776555442 24444433 2233344445555543211111
Q ss_pred CcccEEEEcC
Q 041136 96 MKFDVIIFNF 105 (214)
Q Consensus 96 ~~FD~IiFNF 105 (214)
..+|.|+||+
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 2699999986
No 343
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.30 E-value=1.1e+02 Score=26.36 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=41.5
Q ss_pred CCCeEEEEecC-chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEG-DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeG-nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~~- 93 (214)
.++.+|+.|=+ +=-..+++|+.+. .+.+|+.+..+.. +. +.++.+ ++.|....+.+|+++.+....+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~--~~-------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 74 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA--LK-------KRVEPIAQELGSDYVYELDVSKPEHFKSLA 74 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH--HH-------HHHHHHHHhcCCceEEEecCCCHHHHHHHH
Confidence 36789999953 1122333444432 2457887766531 11 112222 1223335678899986552111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...++|.+|.|=
T Consensus 75 ~~i~~~~g~iDilVnnA 91 (274)
T PRK08415 75 ESLKKDLGKIDFIVHSV 91 (274)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 125689888873
No 344
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=29.21 E-value=1.9e+02 Score=26.69 Aligned_cols=137 Identities=22% Similarity=0.361 Sum_probs=67.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.|+.|||-|+ +| ||-++. -+..|... |..+-|.. + -....+++--.++.++ --|..+- .|.--.+
T Consensus 152 ~gK~I~vvGDDDL-ts--ia~aLt~mpk~iaVv--DIDERli~-f--i~k~aee~g~~~ie~~-~~Dlr~p--lpe~~~~ 220 (354)
T COG1568 152 EGKEIFVVGDDDL-TS--IALALTGMPKRIAVV--DIDERLIK-F--IEKVAEELGYNNIEAF-VFDLRNP--LPEDLKR 220 (354)
T ss_pred CCCeEEEEcCchh-hH--HHHHhcCCCceEEEE--echHHHHH-H--HHHHHHHhCccchhhe-eehhccc--ChHHHHh
Confidence 4567999999887 33 333332 12344433 44344431 1 2223333322222221 1122210 1111247
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC---CEEEEEecCCCCCCccc-Hhh-HHHhcCCE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG---GEVHVTLRDDHPYNQWN-VMG-LADKLGLV 171 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~---G~i~VTl~~~~Py~~W~-i~~-lA~~~gl~ 171 (214)
+||.+|-+.|-+=. -|..|+----.-|+-- |-+-||..+.. -+.|- |.. +-.+-|++
T Consensus 221 kFDvfiTDPpeTi~-----------------alk~FlgRGI~tLkg~~~aGyfgiT~ress-idkW~eiQr~lIn~~gvV 282 (354)
T COG1568 221 KFDVFITDPPETIK-----------------ALKLFLGRGIATLKGEGCAGYFGITRRESS-IDKWREIQRILINEMGVV 282 (354)
T ss_pred hCCeeecCchhhHH-----------------HHHHHHhccHHHhcCCCccceEeeeecccc-HHHHHHHHHHHHHhcCee
Confidence 89999999998631 1333443333335433 77888888744 67776 444 44455666
Q ss_pred EEEE-ecCCCCCCCC
Q 041136 172 LKEK-VEFLKQDFPG 185 (214)
Q Consensus 172 l~~~-~~F~~~~yPg 185 (214)
...- ..|+ .|++
T Consensus 283 ITdiirnFN--~Y~n 295 (354)
T COG1568 283 ITDIIRNFN--EYVN 295 (354)
T ss_pred eHhhhhhhh--cccc
Confidence 5442 2444 4543
No 345
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=29.14 E-value=88 Score=26.12 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=43.7
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
+++||++| .|..-. +|++.+ ..+..++.++.+.+ .+ +...+.++..|. ...+.+|+++.+....+
T Consensus 11 ~k~vlVtG~s~gIG~--~la~~l~~~G~~vv~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 11 GKCAIITGAGAGIGK--EIAITFATAGASVVVSDINAD-AA-------NHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CCEEEEECCCchHHH--HHHHHHHHCCCeEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 68899999 443322 244432 12456777765432 11 122344554454 34568899876542111
Q ss_pred ----CCCcccEEEEcCCCC
Q 041136 94 ----SQMKFDVIIFNFPHA 108 (214)
Q Consensus 94 ----~~~~FD~IiFNFPH~ 108 (214)
.-..+|.||+|--..
T Consensus 81 ~~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 81 FALSKLGKVDILVNNAGGG 99 (255)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 124689999986544
No 346
>PRK07791 short chain dehydrogenase; Provisional
Probab=29.13 E-value=1.4e+02 Score=25.73 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=45.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHH-hcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLK-TKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~-~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|-+. ....++|+.+- .+.+++++..+....-. ..=....+.+++|+..|. .+.+.+|+++.+....+
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 467899999332 34444555442 34578777654310000 000112334566666554 35678899885542111
Q ss_pred -----CCCcccEEEEc
Q 041136 94 -----SQMKFDVIIFN 104 (214)
Q Consensus 94 -----~~~~FD~IiFN 104 (214)
...+.|.+|.|
T Consensus 84 ~~~~~~~g~id~lv~n 99 (286)
T PRK07791 84 DAAVETFGGLDVLVNN 99 (286)
T ss_pred HHHHHhcCCCCEEEEC
Confidence 12468998887
No 347
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=29.04 E-value=72 Score=25.53 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=6.4
Q ss_pred CeEEEEecCchhH
Q 041136 20 QRILLVGEGDFSF 32 (214)
Q Consensus 20 ~~ILlVGeGnFSF 32 (214)
..|+++|||.|.+
T Consensus 68 ~vv~i~GDG~f~~ 80 (172)
T cd02004 68 RVVLVEGDGAFGF 80 (172)
T ss_pred eEEEEEcchhhcC
Confidence 3345555555544
No 348
>PRK06949 short chain dehydrogenase; Provisional
Probab=29.00 E-value=98 Score=25.63 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=44.1
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|..-.+ +++.+. .+..|++++.+.+ .+ ++....|+..+ ....+.+|+++.+....+
T Consensus 8 ~~k~ilItGasg~IG~~--~a~~l~~~G~~Vi~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 8 EGKVALVTGASSGLGAR--FAQVLAQAGAKVVLASRRVE-RL-------KELRAEIEAEGGAAHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CCCEEEEECCCcHHHHH--HHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 468899999 5655555 554432 2457888877643 22 12223343332 234566788865432111
Q ss_pred -----CCCcccEEEEcCCC
Q 041136 94 -----SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 -----~~~~FD~IiFNFPH 107 (214)
.....|.||.|-..
T Consensus 78 ~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 78 AHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 12468999888653
No 349
>PRK07109 short chain dehydrogenase; Provisional
Probab=28.78 E-value=76 Score=28.38 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~-- 93 (214)
.+++||+.|=+. -..+++++.+. .+.+|++++.+.+ . .++..+.++..|..+ .+.+|+++.+....+
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~-~-------l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEE-G-------LEALAAEIRAAGGEALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHH-H-------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 356899999322 23344555442 3457888876532 1 223345566666544 577888876542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
.-.++|.+|.|=
T Consensus 78 ~~~~~~g~iD~lInnA 93 (334)
T PRK07109 78 RAEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHHCCCCCEEEECC
Confidence 114689888773
No 350
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=28.67 E-value=71 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=11.5
Q ss_pred EecCchhHHHHHHHHhCCCCcEEEeecC
Q 041136 25 VGEGDFSFSDCLARAFGSATNMVASSLD 52 (214)
Q Consensus 25 VGeGnFSFS~sLa~~~~~~~~l~ATs~d 52 (214)
.|-..++.+.|+.-++.....+++.+=|
T Consensus 41 ~gsmG~~lpaAiGa~la~~~~Vv~i~GD 68 (181)
T TIGR03846 41 LGSMGLASSIGLGLALATDRTVIVIDGD 68 (181)
T ss_pred ccccccHHHHHHHHHHcCCCcEEEEEcc
Confidence 4444444444443333222334444444
No 351
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=28.61 E-value=2.2e+02 Score=26.01 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHH-HhcC-cc-HHHHHHHHHhCCCEEEEccccccCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTL-KTKH-WT-SQAHLQSLWSRGCLVLHGVNVHTMDRHPT- 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l-~~kY-~~-a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~- 92 (214)
..++|++||-|.-... +|..+. .+.+++..... +.+ .... ++ ...-.+.|++.|+.++.+..++.+.....
T Consensus 136 ~~~~vvViGgG~~g~e--~A~~l~~~g~~Vtli~~~--~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~ 211 (427)
T TIGR03385 136 KVENVVIIGGGYIGIE--MAEALRERGKNVTLIHRS--ERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERV 211 (427)
T ss_pred CCCeEEEECCCHHHHH--HHHHHHhCCCcEEEEECC--cccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCE
Confidence 3579999999876544 332221 12344333222 222 1111 12 22235678889999998876666643211
Q ss_pred --C---CCCcccEEEEc
Q 041136 93 --L---SQMKFDVIIFN 104 (214)
Q Consensus 93 --~---~~~~FD~IiFN 104 (214)
+ ....+|.||+=
T Consensus 212 v~~~~g~~i~~D~vi~a 228 (427)
T TIGR03385 212 KVFTSGGVYQADMVILA 228 (427)
T ss_pred EEEcCCCEEEeCEEEEC
Confidence 1 12467888864
No 352
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.42 E-value=94 Score=22.82 Aligned_cols=42 Identities=17% Similarity=0.491 Sum_probs=25.3
Q ss_pred cCCCCCCeEEEEe-cCchhHHHHHHHHhCCCCcEEEeecCChH
Q 041136 14 SHYTNNQRILLVG-EGDFSFSDCLARAFGSATNMVASSLDSER 55 (214)
Q Consensus 14 ~~~~~~~~ILlVG-eGnFSFS~sLa~~~~~~~~l~ATs~ds~~ 55 (214)
.+++-.+++|++| -..|=-|-.++-.++.+.+-+-.+||...
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk~~ 76 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEKPP 76 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-----
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeeccCC
Confidence 4555668999999 56666666688888888899999998643
No 353
>PRK08303 short chain dehydrogenase; Provisional
Probab=28.30 E-value=1.3e+02 Score=26.59 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcC--c-cHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKH--W-TSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY--~-~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++.+|+.|=+ =..-+++|+.+- .+.+|++++.+.... .+.+ + ...+..+.|+..|. .+.+.+|+++......
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRAR-RSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccc-cccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 35789999933 235555666542 346888888764211 0000 0 12333455666564 4567889987654221
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.+.|.+|.|-
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 1 114689999884
No 354
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.11 E-value=3.3e+02 Score=22.21 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~--- 93 (214)
+++||+.|=+. .--.+|++.+. .+.+++.++..+.+++. ..+..++..|.. ..+.+|+++......+
T Consensus 6 ~~~vlitGasg-~iG~~l~~~l~~~g~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTGSGR-GIGRAIAVRLAKEGSLVVVNAKKRAEEMN-------ETLKMVKENGGEGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCChHHHH-------HHHHHHHHcCCeeEEEEeccCCHHHHHHHHHH
Confidence 57899999332 22344666542 24567665544433322 234455555543 4567888765532111
Q ss_pred ---CCCcccEEEEcCCC
Q 041136 94 ---SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH 107 (214)
.-...|.||+|---
T Consensus 78 ~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 78 TIDRYGVADILVNNAGL 94 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 01468999988643
No 355
>PRK07063 short chain dehydrogenase; Provisional
Probab=28.07 E-value=94 Score=25.94 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCC-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.| -|.. .+++++.+. .+.+|+.++.+.+ . .++..+.|+. .+. ...+.+|.++......
T Consensus 6 ~~k~vlVtGas~gI--G~~~a~~l~~~G~~vv~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 75 (260)
T PRK07063 6 AGKVALVTGAAQGI--GAAIARAFAREGAAVALADLDAA-L-------AERAAAAIARDVAGARVLAVPADVTDAASVAA 75 (260)
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhccCCceEEEEEccCCCHHHHHH
Confidence 357899999 3333 333544431 3457888877542 2 2223444544 233 4467788887544211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ ....+|.+|.|=
T Consensus 76 ~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 76 AVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHHHhCCCcEEEECC
Confidence 1 124689998883
No 356
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=27.90 E-value=83 Score=25.18 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=22.8
Q ss_pred CCCeEEEEecCchhHHH-HH--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sL--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|.+.. +| +..+ ..+++...+|..
T Consensus 67 ~~~vv~i~GDG~f~~~~~el~ta~~~--~~p~~~iV~nN~ 104 (178)
T cd02002 67 DRKVVAIIGDGSFMYTIQALWTAARY--GLPVTVVILNNR 104 (178)
T ss_pred CCeEEEEEcCchhhccHHHHHHHHHh--CCCeEEEEEcCc
Confidence 45678899999988752 22 3334 356777777764
No 357
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=27.89 E-value=1.9e+02 Score=25.87 Aligned_cols=68 Identities=21% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCCCCCcccEEEE----cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc---Hhh
Q 041136 91 PTLSQMKFDVIIF----NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN---VMG 163 (214)
Q Consensus 91 ~~~~~~~FD~IiF----NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~---i~~ 163 (214)
-.|....||-+|. ..++..-++ ..+ -+.=|..||.+--.+|+.+++...-. +|-+.=+ |..
T Consensus 106 lpfrpGtFDg~ISISAvQWLcnA~~s---~~~------P~~Rl~~FF~tLy~~l~rg~raV~Qf---Ypen~~q~d~i~~ 173 (270)
T KOG1541|consen 106 LPFRPGTFDGVISISAVQWLCNADKS---LHV------PKKRLLRFFGTLYSCLKRGARAVLQF---YPENEAQIDMIMQ 173 (270)
T ss_pred CCCCCCccceEEEeeeeeeecccCcc---ccC------hHHHHHHHhhhhhhhhccCceeEEEe---cccchHHHHHHHH
Confidence 3477888998774 344444322 111 13347889999999999999976653 3444333 566
Q ss_pred HHHhcCC
Q 041136 164 LADKLGL 170 (214)
Q Consensus 164 lA~~~gl 170 (214)
.|.++||
T Consensus 174 ~a~~aGF 180 (270)
T KOG1541|consen 174 QAMKAGF 180 (270)
T ss_pred HHHhhcc
Confidence 7888774
No 358
>PRK06182 short chain dehydrogenase; Validated
Probab=27.69 E-value=1e+02 Score=26.11 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=42.0
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-C--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-L-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~-- 93 (214)
.++||+.| .|.. ..+|++.+ ..+.+|++++.+.+ . ++.+...++.+ +..|.++.+.... +
T Consensus 3 ~k~vlItGasggi--G~~la~~l~~~G~~V~~~~r~~~-~-----------l~~~~~~~~~~-~~~Dv~~~~~~~~~~~~ 67 (273)
T PRK06182 3 KKVALVTGASSGI--GKATARRLAAQGYTVYGAARRVD-K-----------MEDLASLGVHP-LSLDVTDEASIKAAVDT 67 (273)
T ss_pred CCEEEEECCCChH--HHHHHHHHHHCCCEEEEEeCCHH-H-----------HHHHHhCCCeE-EEeeCCCHHHHHHHHHH
Confidence 57899999 4544 44466654 23568888877642 2 22233345443 4578877553211 1
Q ss_pred ---CCCcccEEEEcCCC
Q 041136 94 ---SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH 107 (214)
.....|.||.|-.-
T Consensus 68 ~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 68 IIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 12368999988543
No 359
>PRK08643 acetoin reductase; Validated
Probab=27.62 E-value=99 Score=25.68 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=42.5
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC-C-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT-L- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~-~- 93 (214)
++++|+.| -|..-. +|++.+- .+.+|+.++.+... + .+....++..+. .+.+.+|.++.+.... +
T Consensus 2 ~k~~lItGas~giG~--~la~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (256)
T PRK08643 2 SKVALVTGAGQGIGF--AIAKRLVEDGFKVAIVDYNEET-A-------QAAADKLSKDGGKAIAVKADVSDRDQVFAAVR 71 (256)
T ss_pred CCEEEEECCCChHHH--HHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46788888 444333 3555432 24578888766421 1 122334444443 4467889887653211 1
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
...+.|.||.|=
T Consensus 72 ~~~~~~~~id~vi~~a 87 (256)
T PRK08643 72 QVVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689999875
No 360
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=27.43 E-value=73 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCCeEEEEecCch-hH-HHHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDF-SF-SDCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SF-S~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||+| ++ ...|..+...+.+|+.-.+|..
T Consensus 71 d~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~ 109 (287)
T TIGR02177 71 HLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQ 109 (287)
T ss_pred CCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECH
Confidence 3455788889986 22 2334333223457777777764
No 361
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=27.41 E-value=68 Score=30.18 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHH
Q 041136 67 HLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAF 132 (214)
Q Consensus 67 ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~F 132 (214)
.+..++ .|-.|.||.|+.++... +.+--|.=||+|| -.|... .-+.-.++.++..|+-+=
T Consensus 304 ~~~q~q-agetVwFG~dvgq~s~r---k~Gimdtd~~~~~s~~g~~~--~q~KA~RldY~eSLmTHA 364 (444)
T COG3579 304 AIKQMQ-AGETVWFGCDVGQLSDR---KTGIMDTDIYDYESSLGINL--TQDKAGRLDYGESLMTHA 364 (444)
T ss_pred HHHHHh-cCCcEEeecCchhhccc---ccceeeehhccchhhhCCCc--ccchhhccccchHHHHHH
Confidence 355666 48999999999999874 5667899999999 446532 111123456666776653
No 362
>PRK07102 short chain dehydrogenase; Provisional
Probab=27.16 E-value=3.5e+02 Score=22.15 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=43.7
Q ss_pred CeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-C-CEEEEccccccCCCCCCCC-
Q 041136 20 QRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-G-CLVLHGVNVHTMDRHPTLS- 94 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g-~~Vl~~VDAt~L~~~~~~~- 94 (214)
++||+.| .|..-.+ +++.+ ..+.+|++++.+.+. ..+..+.++.. + -...+.+|.++......+-
T Consensus 2 ~~vlItGas~giG~~--~a~~l~~~G~~Vi~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 71 (243)
T PRK07102 2 KKILIIGATSDIARA--CARRYAAAGARLYLAARDVER--------LERLADDLRARGAVAVSTHELDILDTASHAAFLD 71 (243)
T ss_pred cEEEEEcCCcHHHHH--HHHHHHhcCCEEEEEeCCHHH--------HHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHH
Confidence 4788998 5544333 44443 124578888776432 12233333332 2 2345778888765422111
Q ss_pred --CCcccEEEEcCCCCC
Q 041136 95 --QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 --~~~FD~IiFNFPH~G 109 (214)
...+|.||.|-.+.+
T Consensus 72 ~~~~~~d~vv~~ag~~~ 88 (243)
T PRK07102 72 SLPALPDIVLIAVGTLG 88 (243)
T ss_pred HHhhcCCEEEECCcCCC
Confidence 135799998865554
No 363
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=27.06 E-value=4.3e+02 Score=23.19 Aligned_cols=137 Identities=13% Similarity=0.181 Sum_probs=77.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.|.+.+.+||.+|=..=+.---++.-.++..-|+|.-+-... ..+=+..-+++.-.|=.==||+.-+++..+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~--------~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l 140 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS--------MRDLLNLAKKRPNIIPILEDARHPEKYRML 140 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH--------HHHHHHHHHHSTTEEEEES-TTSGGGGTTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchh--------HHHHHHHhccCCceeeeeccCCChHHhhcc
Confidence 578899999999965533332344444545568887665432 111122223333344344599988887666
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------CCCCCcccH-hhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------DHPYNQWNV-MGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------~~Py~~W~i-~~lA~ 166 (214)
-. ..|.|+-+=.+... .+=+..+|..+|+++|.+.|.++. ..|-..|.- +..-+
T Consensus 141 v~-~VDvI~~DVaQp~Q------------------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~ 201 (229)
T PF01269_consen 141 VE-MVDVIFQDVAQPDQ------------------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLK 201 (229)
T ss_dssp S---EEEEEEE-SSTTH------------------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHH
T ss_pred cc-cccEEEecCCChHH------------------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHH
Confidence 54 79999988666431 122456788899999999999974 133333332 22334
Q ss_pred hcCCEEEEEec
Q 041136 167 KLGLVLKEKVE 177 (214)
Q Consensus 167 ~~gl~l~~~~~ 177 (214)
+.||.+.+...
T Consensus 202 ~~~~~~~e~i~ 212 (229)
T PF01269_consen 202 EEGFKPLEQIT 212 (229)
T ss_dssp CTTCEEEEEEE
T ss_pred HcCCChheEec
Confidence 46888877653
No 364
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.03 E-value=1.3e+02 Score=28.02 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHH---hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARA---FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~---~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+-.++++.++||++..++ |++. +|-.+-.++|..++... .++ .+.+..+......++.+-|..++.+.
T Consensus 296 ~l~gk~v~i~~~~~~~~~--l~~~L~e~G~~v~~v~~~~~~~~~-~~~----~~~~~~~~~~~~~~v~~~d~~el~~~-- 366 (428)
T cd01965 296 YLGGKRVAIAGDPDLLLG--LSRFLLEMGAEPVAAVTGTDNPPF-EKR----MELLASLEGIPAEVVFVGDLWDLESL-- 366 (428)
T ss_pred HhcCCEEEEEcChHHHHH--HHHHHHHcCCcceEEEEcCCCchh-HHH----HHHhhhhcCCCceEEECCCHHHHHHH--
Confidence 557899999999987665 4443 44333334444443221 111 12222333345667777777777652
Q ss_pred CCCCcccEEEEcC
Q 041136 93 LSQMKFDVIIFNF 105 (214)
Q Consensus 93 ~~~~~FD~IiFNF 105 (214)
++..+.|.||=|-
T Consensus 367 i~~~~pdliig~~ 379 (428)
T cd01965 367 AKEEPVDLLIGNS 379 (428)
T ss_pred hhccCCCEEEECc
Confidence 4445566666554
No 365
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=26.74 E-value=62 Score=31.50 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=24.0
Q ss_pred ccCCCCCCeEEEEecCchhHHHH-HHH-HhCCCCcEEEee
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDC-LAR-AFGSATNMVASS 50 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~s-La~-~~~~~~~l~ATs 50 (214)
..++-.++|+.+.|||+.+.+++ +.. .+| ..+++++
T Consensus 322 ~~~~L~GKrvai~~gg~~~~~~~~~l~~ElG--mevv~~~ 359 (513)
T TIGR01861 322 YKERLKGKKVCLWPGGSKLWHWAHVIEEEMG--LKVVSVY 359 (513)
T ss_pred HHHhcCCCEEEEECCchHHHHHHHHHHHhCC--CEEEEEe
Confidence 33566899999999999887755 222 465 3455543
No 366
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.11 E-value=1.6e+02 Score=25.81 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++++|+.|=+. ...+++|+.+. .+.+++.+...+.+. .++.+++++..|.. +.+.+|+++.+....+
T Consensus 11 ~~k~~lVTGas~-gIG~~ia~~L~~~Ga~Vv~~~~~~~~~-------~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 11 SGKVAVVTGAAA-GLGRAEALGLARLGATVVVNDVASALD-------ASDVLDEIRAAGAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEecCCchhH-------HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 567899999443 12233444431 245677665543222 23345666666654 4677888874432111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.-.+.|.+|.|=
T Consensus 83 ~~~~~g~iD~li~nA 97 (306)
T PRK07792 83 TAVGLGGLDIVVNNA 97 (306)
T ss_pred HHHHhCCCCEEEECC
Confidence 124689998874
No 367
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=25.76 E-value=2.1e+02 Score=24.93 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCCCeEEEEecCchhHH-HHHHHHhCCCCcEEEe
Q 041136 17 TNNQRILLVGEGDFSFS-DCLARAFGSATNMVAS 49 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~AT 49 (214)
.++.+||+.|.|-...+ ..||+.+|. ..+++|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~ 192 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGA-YPVIVS 192 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEE
Confidence 46789999888766665 346777752 237777
No 368
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.75 E-value=2.2e+02 Score=23.99 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCeEEEEecCchhHHHHHHH-HhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCC---
Q 041136 18 NNQRILLVGEGDFSFSDCLAR-AFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPT--- 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~-~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~--- 92 (214)
.+++|++||-|+-..-.+.+- ..+ .+++.-. ..+.+ .......+.|++. |+.++.+..++++.....
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~--~~V~~v~--~~~~~----~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~ 211 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIA--KKVTLVH--RRDKF----RAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEG 211 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhc--CEEEEEE--eCccc----CcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEE
Confidence 457999999998766433321 122 2333222 11111 1123346677777 999988876666543210
Q ss_pred --C--------CCCcccEEEEcCC
Q 041136 93 --L--------SQMKFDVIIFNFP 106 (214)
Q Consensus 93 --~--------~~~~FD~IiFNFP 106 (214)
+ ....+|.||+--+
T Consensus 212 v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 212 VKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred EEEEecCCCceEEEEccEEEEeeC
Confidence 0 1245777777654
No 369
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.69 E-value=1.5e+02 Score=24.44 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=42.2
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC---
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~--- 93 (214)
+.||+.| .|.. ..+|++.+- .+.+|++++....+. ..+.++.++..+. ...+.+|.++-.....+
T Consensus 3 k~vlItG~sg~i--G~~la~~L~~~g~~vi~~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (256)
T PRK12745 3 PVALVTGGRRGI--GLGIARALAAAGFDLAINDRPDDEE-------LAATQQELRALGVEVIFFPADVADLSAHEAMLDA 73 (256)
T ss_pred cEEEEeCCCchH--HHHHHHHHHHCCCEEEEEecCchhH-------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 5688888 4433 344555432 235777776543322 2234455555454 45667898874431111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.....|.||.|-
T Consensus 74 ~~~~~~~id~vi~~a 88 (256)
T PRK12745 74 AQAAWGRIDCLVNNA 88 (256)
T ss_pred HHHhcCCCCEEEECC
Confidence 114689999884
No 370
>PRK07326 short chain dehydrogenase; Provisional
Probab=25.64 E-value=3.6e+02 Score=21.80 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-CC-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-LS- 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~~- 94 (214)
+++||++| -|.+.-+ |++.+ ..+..|++++.+... .....+.|+..+....+.+|+++...... +.
T Consensus 6 ~~~ilItGatg~iG~~--la~~l~~~g~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKGIGFA--IAEALLAEGYKVAITARDQKE--------LEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCcHHHH--HHHHHHHCCCEEEEeeCCHHH--------HHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 57899999 4555444 54443 124578888765421 11233444432334456778776543111 11
Q ss_pred ----CCcccEEEEc
Q 041136 95 ----QMKFDVIIFN 104 (214)
Q Consensus 95 ----~~~FD~IiFN 104 (214)
....|.||.+
T Consensus 76 ~~~~~~~~d~vi~~ 89 (237)
T PRK07326 76 IVAAFGGLDVLIAN 89 (237)
T ss_pred HHHHcCCCCEEEEC
Confidence 1357877766
No 371
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.63 E-value=1.3e+02 Score=25.51 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=42.3
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~- 93 (214)
.++.+|+.|= |.=-.-+++|+.+. .+.+|+.+..... ..+.++++.. .|..+.+.+|+++.+....+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK---------LEERVRKMAAELDSELVFRCDVASDDEINQVF 75 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH---------HHHHHHHHHhccCCceEEECCCCCHHHHHHHH
Confidence 4678999993 22112233444432 2457877754321 1122344432 24445678899876553211
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.+.|.+|.|=
T Consensus 76 ~~~~~~~g~iD~lVnnA 92 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSI 92 (261)
T ss_pred HHHHHHhCCCcEEEECC
Confidence 124699999883
No 372
>PRK06196 oxidoreductase; Provisional
Probab=25.50 E-value=90 Score=27.28 Aligned_cols=77 Identities=10% Similarity=0.169 Sum_probs=42.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
.+++||+.|=+.+ ...++++.+. .+.+|++++.+.+. + ++.++.++. ...+.+|.++.+....+
T Consensus 25 ~~k~vlITGasgg-IG~~~a~~L~~~G~~Vv~~~R~~~~-~-------~~~~~~l~~---v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGGYSG-LGLETTRALAQAGAHVIVPARRPDV-A-------REALAGIDG---VEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHhhh---CeEEEccCCCHHHHHHHHHH
Confidence 3578999994322 3344555532 34688888876431 1 122233322 34567888876542111
Q ss_pred ---CCCcccEEEEcCC
Q 041136 94 ---SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ---~~~~FD~IiFNFP 106 (214)
...+.|.||.|-.
T Consensus 93 ~~~~~~~iD~li~nAg 108 (315)
T PRK06196 93 FLDSGRRIDILINNAG 108 (315)
T ss_pred HHhcCCCCCEEEECCC
Confidence 1246899998864
No 373
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=25.45 E-value=83 Score=30.89 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=26.4
Q ss_pred CCCeEEEEecCchhHH--HHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFS--DCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+.+.|.++|||.|-++ ..|........+++.-.+|..
T Consensus 421 ~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~ 459 (595)
T TIGR03336 421 KQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNR 459 (595)
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCc
Confidence 4567899999999875 677655433457777777764
No 374
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=25.42 E-value=52 Score=26.66 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCeEEEEecCchhHHHHH---HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSDCL---ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sL---a~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|.++..= +..++ .+++...++..
T Consensus 69 ~~~vv~i~GDG~f~~~~~el~t~~~~~--lp~~~iv~NN~ 106 (178)
T cd02014 69 DRQVIALSGDGGFAMLMGDLITAVKYN--LPVIVVVFNNS 106 (178)
T ss_pred CCcEEEEEcchHHHhhHHHHHHHHHhC--CCcEEEEEECC
Confidence 4567899999999986322 22333 46777777763
No 375
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.35 E-value=1.4e+02 Score=26.10 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=23.6
Q ss_pred CCCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecC
Q 041136 17 TNNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLD 52 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~d 52 (214)
..+++||+.|.|-..-. ..+|+..|. .++++|+-+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~ 197 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPS 197 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence 45899999998876654 345677752 238887543
No 376
>PRK12828 short chain dehydrogenase; Provisional
Probab=25.11 E-value=1.3e+02 Score=24.25 Aligned_cols=78 Identities=8% Similarity=0.095 Sum_probs=43.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-CC-
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-LS- 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~~- 94 (214)
+++||+.| -|.. ..+|++.+. .+..|++++.+.... .+.++.+...++.+ ...|.++.++... +.
T Consensus 7 ~k~vlItGatg~i--G~~la~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 7 GKVVAITGGFGGL--GRATAAWLAARGARVALIGRGAAPL--------SQTLPGVPADALRI-GGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCEEEEECCCCcH--hHHHHHHHHHCCCeEEEEeCChHhH--------HHHHHHHhhcCceE-EEeecCCHHHHHHHHHH
Confidence 57899999 4544 344655542 245788888865321 12234454455544 4578776543211 11
Q ss_pred ----CCcccEEEEcCCC
Q 041136 95 ----QMKFDVIIFNFPH 107 (214)
Q Consensus 95 ----~~~FD~IiFNFPH 107 (214)
..+.|.||+|-.-
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 76 VNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHhCCcCEEEECCcc
Confidence 1367999987543
No 377
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=24.97 E-value=2.2e+02 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCCCCeEEEEecCchhHH-HHHHHHhCCCCc-EEEeecC
Q 041136 15 HYTNNQRILLVGEGDFSFS-DCLARAFGSATN-MVASSLD 52 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS-~sLa~~~~~~~~-l~ATs~d 52 (214)
....+.+||+.|.|...-+ ..||+..| .+ +++|+-+
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~ 193 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPN 193 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCC
Confidence 4456789999997654433 34566665 34 6666443
No 378
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=24.86 E-value=4.7e+02 Score=22.82 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH---- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~---- 90 (214)
-++++++||-+|=.==|.|.--.+..++ |=.+.+.|-.. +.-+ .|+.++.+-|.|+-...
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p--~g~v~gVDllh------------~~p~--~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNP--NGMVLGVDLLH------------IEPP--EGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCC--CceEEEEeeee------------ccCC--CCcccccccccCCHHHHHHHH
Confidence 3566999999995444555433333332 34445555432 2222 47888888888863321
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
..+.+.+.|+|+.+.-|-..+..+.|+.+ .|.+..+ -+.=|-.++.|+|.+..-+=+|..
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~-~i~LC~s----~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYR-SIELCDS----ALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHH-HHHHHHH----HHHHhhhhcCCCcEEEEEEecCCc
Confidence 12456889999999877655333333332 1233333 334467778899999888777763
No 379
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=24.75 E-value=73 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=23.6
Q ss_pred eEEEEecCchhHHHHHHHH-hC-CCCcEE-EeecCCh--HHHHhcCc
Q 041136 21 RILLVGEGDFSFSDCLARA-FG-SATNMV-ASSLDSE--RTLKTKHW 62 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~-~~-~~~~l~-ATs~ds~--~~l~~kY~ 62 (214)
||-++|=|+..-+++-.-. .+ .+.+|+ +++.+.+ +++.+.|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc
Confidence 6889999999887443211 11 125676 5455543 34545554
No 380
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.67 E-value=3.5e+02 Score=21.86 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=39.0
Q ss_pred CCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 18 NNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 18 ~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
-+.+|-+||-.+... ...+.+.++ .+|.--.+++.+++. .-++.+...|+.|+.|-
T Consensus 76 ~~~~Iavv~~~~~~~~~~~~~~ll~--~~i~~~~~~~~~e~~-------~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPGLESIEELLG--VDIKIYPYDSEEEIE-------AAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp CTSEEEEEEESS-SCCHHHHHHHHT---EEEEEEESSHHHHH-------HHHHHHHHTT--EEEES
T ss_pred cCCcEEEEecccccHHHHHHHHHhC--CceEEEEECCHHHHH-------HHHHHHHHcCCcEEECC
Confidence 447899999887777 455666674 578888888877654 45889999999888774
No 381
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.57 E-value=4e+02 Score=21.90 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=43.6
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.| -|..-.+ +++.+. .+.+|+.++.+.. . .++..+.+.+.+. ...+.+|.++......+ .
T Consensus 8 ~k~vlItGas~gIG~~--l~~~l~~~G~~Vi~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 8 GKIALVTGASRGIGEA--IAKLLAQQGAHVIVSSRKLD-G-------CQAVADAIVAAGGKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred CCEEEEECCCcHHHHH--HHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 46789998 4443333 444431 2457888876542 2 2234555555554 34567788776542111 0
Q ss_pred -----CCcccEEEEcCCC
Q 041136 95 -----QMKFDVIIFNFPH 107 (214)
Q Consensus 95 -----~~~FD~IiFNFPH 107 (214)
-.+.|.||.|-..
T Consensus 78 ~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 78 HIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1358999987654
No 382
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.44 E-value=1.8e+02 Score=29.32 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=40.7
Q ss_pred CCCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
...+++|++||-||-..-.|. +..++. .+|+.....+..++ |....-++.+++.|+.++.+..++.+.
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga-~~Vtlv~r~~~~~~----~~~~~e~~~~~~~GV~i~~~~~~~~i~ 635 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGA-ERVTIVYRRSEEEM----PARLEEVKHAKEEGIEFLTLHNPIEYL 635 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCC-CeEEEeeecCcccC----CCCHHHHHHHHHcCCEEEecCcceEEE
Confidence 345789999999998775433 233442 22544433332222 222333566788899999887776653
No 383
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.34 E-value=1.9e+02 Score=25.96 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=49.6
Q ss_pred CCCCeE-EEEecCchh------HHHHHH----HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccc
Q 041136 17 TNNQRI-LLVGEGDFS------FSDCLA----RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVH 85 (214)
Q Consensus 17 ~~~~~I-LlVGeGnFS------FS~sLa----~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt 85 (214)
.+.++| .++|-|+|+ |-+||+ +++. -..+.|.-||.-= ..+-++.|+++|+.|+-.=-+
T Consensus 79 ~piek~~vclglG~f~~~~~a~~Qlal~iei~r~fk-~~~~~~s~fDPvf--------~k~E~eyLeslG~cvLs~~e~- 148 (281)
T KOG3131|consen 79 KPIEKIIVCLGLGPFSRTYHALHQLALVIEIHRHFK-IRDVEASYFDPVF--------RKSEKEYLESLGGCVLSKDEA- 148 (281)
T ss_pred cchhheEEEEeeccccccccHHHHHHHHHHHHHHhc-cccceeeeeCcch--------hhhHHHHHHhcCCeEeccCcc-
Confidence 455664 999999986 333443 3443 2347788888631 233488999999999854221
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCC
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGH 110 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~ 110 (214)
-+.+-.--..+=.||+..
T Consensus 149 -------~~~ealkpTLyylPHcp~ 166 (281)
T KOG3131|consen 149 -------GKHEALKPTLYYLPHCPY 166 (281)
T ss_pred -------ccccccceeeEecCCCch
Confidence 223445667888999975
No 384
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.27 E-value=3.9e+02 Score=21.65 Aligned_cols=79 Identities=10% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
+++||+.|= |..-.+ +++.+ ..+.+|++++.+.+. + .+..+.+...+....+.+|.++-+....+
T Consensus 5 ~~~vlItGa~g~iG~~--~a~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 5 GKKVAIIGVSEGLGYA--VAYFALKEGAQVCINSRNENK-L-------KRMKKTLSKYGNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CcEEEEECCCchHHHH--HHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhcCCeEEEECCCCCHHHHHHHHHH
Confidence 578999994 444443 44443 234578888775422 1 11223334344455567777764431110
Q ss_pred ---CCCcccEEEEcCCC
Q 041136 94 ---SQMKFDVIIFNFPH 107 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH 107 (214)
.-...|.||+|-..
T Consensus 75 ~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGG 91 (238)
T ss_pred HHHHhCCCCEEEEcCCC
Confidence 11357999887654
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=24.24 E-value=1.5e+02 Score=24.94 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAF-GSATNMVASSLD 52 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~d 52 (214)
.+++||+||-|.....+ ++.+ ..+.+|+..+-+
T Consensus 9 ~~k~vLVIGgG~va~~k--a~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRR--AITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHH--HHHHHHCCCeEEEEcCC
Confidence 57899999999998764 3322 123466666544
No 386
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.21 E-value=1.7e+02 Score=24.65 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|..- +++++.+. .+.+|++++.+.+ . .++..+.++..|.. ..+.+|.++.+....+
T Consensus 9 ~~k~vlVtGas~giG--~~ia~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 78 (278)
T PRK08277 9 KGKVAVITGGGGVLG--GAMAKELARAGAKVAILDRNQE-K-------AEAVVAEIKAAGGEALAVKADVLDKESLEQAR 78 (278)
T ss_pred CCCEEEEeCCCchHH--HHHHHHHHHCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 357788888 44443 33555432 3457888877532 1 22334555555543 4567888875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.+.|.||.|=
T Consensus 79 ~~~~~~~g~id~li~~a 95 (278)
T PRK08277 79 QQILEDFGPCDILINGA 95 (278)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124689998873
No 387
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.20 E-value=89 Score=23.16 Aligned_cols=29 Identities=21% Similarity=0.084 Sum_probs=22.4
Q ss_pred cCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 60 KHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 60 kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
-+|.|.+.|+.|++.|..+++=-|.+.-.
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s 43 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRS 43 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 46899999999999999999877766543
No 388
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=24.14 E-value=3.9e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecC
Q 041136 17 TNNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLD 52 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~d 52 (214)
..+.+||++|-|...- ...+++..+ .++++++.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~ 167 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRS 167 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCC
Confidence 6788999999887221 222455554 578888655
No 389
>PRK12829 short chain dehydrogenase; Provisional
Probab=24.12 E-value=1.1e+02 Score=25.34 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-CC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-LS 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-~~ 94 (214)
+++++|+.| .|.+-.+ +++.+ ..+.+|+++..+... +. +-.+.+... -...+.+|+++...... +.
T Consensus 10 ~~~~vlItGa~g~iG~~--~a~~L~~~g~~V~~~~r~~~~-~~-------~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 10 DGLRVLVTGGASGIGRA--IAEAFAEAGARVHVCDVSEAA-LA-------ATAARLPGA-KVTATVADVADPAQVERVFD 78 (264)
T ss_pred CCCEEEEeCCCCcHHHH--HHHHHHHCCCEEEEEeCCHHH-HH-------HHHHHHhcC-ceEEEEccCCCHHHHHHHHH
Confidence 568999999 6666544 55443 224578888876432 11 111222211 23566788887553211 11
Q ss_pred -----CCcccEEEEcCCC
Q 041136 95 -----QMKFDVIIFNFPH 107 (214)
Q Consensus 95 -----~~~FD~IiFNFPH 107 (214)
-.++|.||.|=.-
T Consensus 79 ~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 TAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1368999988543
No 390
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=23.99 E-value=95 Score=25.40 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=7.4
Q ss_pred CeEEEEecCchhH
Q 041136 20 QRILLVGEGDFSF 32 (214)
Q Consensus 20 ~~ILlVGeGnFSF 32 (214)
..|+++|||.|-+
T Consensus 61 ~vv~i~GDG~f~m 73 (179)
T cd03372 61 KVIVIDGDGSLLM 73 (179)
T ss_pred cEEEEECCcHHHh
Confidence 4456666666644
No 391
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=23.97 E-value=86 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCeEEEEecCchhHHH-HH--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sL--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||.|-++. .| |..++ .+|+.-.++..
T Consensus 71 ~r~vv~i~GDG~f~m~~~eL~Ta~~~~--lpvi~vV~NN~ 108 (196)
T cd02013 71 DRPVVAIAGDGAWGMSMMEIMTAVRHK--LPVTAVVFRNR 108 (196)
T ss_pred CCcEEEEEcchHHhccHHHHHHHHHhC--CCeEEEEEECc
Confidence 34567888999888852 22 33343 46776666653
No 392
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=23.95 E-value=3e+02 Score=24.46 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 15 HYTNNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
....+++||+.|.|-..- +..+|+.+|. ..+++++.+.+ .++.++++|+..+++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~------------~~~~~~~~Ga~~~i~ 238 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPS------------KFEQAKKFGVTEFVN 238 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHH------------HHHHHHHcCCceEEc
Confidence 346789999999887664 3456777752 36788755432 244556677654443
No 393
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=23.75 E-value=2.4e+02 Score=25.40 Aligned_cols=67 Identities=22% Similarity=0.285 Sum_probs=37.6
Q ss_pred CCCeEEEEecCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcC-c-c-HHHHHHHHHhCCCEEEEccccccCCC
Q 041136 18 NNQRILLVGEGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKH-W-T-SQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY-~-~-a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
..++|++||-|.--.- ..|++ .+ .+| |-++..+.+.... + . +..-.+.|++.|+.++.+..++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~-~g--~~V--tlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~ 211 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCR-AG--KAV--TLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEK 211 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh-cC--CeE--EEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEc
Confidence 4679999998875443 33332 22 233 3333322222211 1 1 22335678889999998877776653
No 394
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.65 E-value=4.6e+02 Score=22.33 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=42.6
Q ss_pred CCCeEEEEec---CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGE---GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGe---GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.|= +..-.+ +|+.+. .+.+|+.++.+. .+. +.+++|. +.|..+.+.+|+++......
T Consensus 9 ~~k~~lItGas~~~GIG~a--ia~~la~~G~~V~l~~r~~--~~~-------~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWG--IAKACRAAGAELAFTYQGD--ALK-------KRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred cCCEEEEECCCCCCcHHHH--HHHHHHHCCCEEEEEcCch--HHH-------HHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 3578999995 345544 555442 345777776431 111 1233332 23544557788887554322
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.+.|.+|.|-
T Consensus 78 ~~~~~~~~~g~iD~lv~nA 96 (272)
T PRK08159 78 VFETLEKKWGKLDFVVHAI 96 (272)
T ss_pred HHHHHHHhcCCCcEEEECC
Confidence 1 124689999885
No 395
>PRK05876 short chain dehydrogenase; Provisional
Probab=23.38 E-value=1.2e+02 Score=25.94 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCeEEEEecC-chhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVGEG-DFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVGeG-nFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.|=+ ..- .+||+.+. .+.+|+.+..+. +.+ .+.++.|+..|.. ..+.+|+++.+....+
T Consensus 6 ~k~vlVTGas~gIG--~ala~~La~~G~~Vv~~~r~~-~~l-------~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 6 GRGAVITGGASGIG--LATGTEFARRGARVVLGDVDK-PGL-------RQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCEEEEeCCCchHH--HHHHHHHHHCCCEEEEEeCCH-HHH-------HHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 5679999844 332 33444431 245787776653 222 2345666666654 3567888876542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
...+.|.||.|=
T Consensus 76 ~~~~~~g~id~li~nA 91 (275)
T PRK05876 76 EAFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHHcCCCCEEEECC
Confidence 123578888764
No 396
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.30 E-value=95 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCCCeEEEEecCchhHHH-HH--HHHhCCCCcEEEeecCCh
Q 041136 17 TNNQRILLVGEGDFSFSD-CL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~-sL--a~~~~~~~~l~ATs~ds~ 54 (214)
.+...|.++|||.|.|+. .| +..++ .+|+...++..
T Consensus 451 p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~--lpvi~vV~NN~ 489 (616)
T PRK07418 451 PDEEVICIAGDASFLMNIQELGTLAQYG--INVKTVIINNG 489 (616)
T ss_pred CCCcEEEEEcchHhhhhHHHHHHHHHhC--CCeEEEEEECC
Confidence 356779999999999984 34 34454 46777777764
No 397
>PRK06841 short chain dehydrogenase; Provisional
Probab=23.24 E-value=1.1e+02 Score=25.27 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.| .|..-. ++++.+. .+.+|++++.+.... +-.+.+.. +....+.+|+++......+ .
T Consensus 14 ~~k~vlItGas~~IG~--~la~~l~~~G~~Vi~~~r~~~~~---------~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 81 (255)
T PRK06841 14 SGKVAVVTGGASGIGH--AIAELFAAKGARVALLDRSEDVA---------EVAAQLLG-GNAKGLVCDVSDSQSVEAAVA 81 (255)
T ss_pred CCCEEEEECCCChHHH--HHHHHHHHCCCEEEEEeCCHHHH---------HHHHHhhC-CceEEEEecCCCHHHHHHHHH
Confidence 467899999 454433 3544431 245788888764321 11122222 2234678888876542111 0
Q ss_pred -----CCcccEEEEcCC
Q 041136 95 -----QMKFDVIIFNFP 106 (214)
Q Consensus 95 -----~~~FD~IiFNFP 106 (214)
-.++|.||+|=-
T Consensus 82 ~~~~~~~~~d~vi~~ag 98 (255)
T PRK06841 82 AVISAFGRIDILVNSAG 98 (255)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 136899988854
No 398
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=23.17 E-value=50 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCCCEEEEE
Q 041136 127 NLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 127 ~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+=|..||+.+..+|+|||.+.+-
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCEEEEe
Confidence 44889999999999999998876
No 399
>PRK12743 oxidoreductase; Provisional
Probab=23.02 E-value=4.4e+02 Score=21.85 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=42.1
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~--- 93 (214)
.++||+.|=... ...++++++- .+.+|+.+...+.+.+ ..-.+.++..|. ..++.+|.++......+
T Consensus 2 ~k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 2 AQVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGA-------KETAEEVRSHGVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHH-------HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 468999993321 3333555431 2456766654333322 222445555565 44567888875432111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.-.+.|.||.|-
T Consensus 74 ~~~~~~~id~li~~a 88 (256)
T PRK12743 74 LIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 114689998883
No 400
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=22.96 E-value=34 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=20.8
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCC
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds 53 (214)
++||+||+|+++. +.+.+-.+..|.||..+.
T Consensus 35 ~~VLlv~~~~~~~---iG~P~l~~a~V~a~V~~~ 65 (101)
T TIGR00061 35 DKVLMVNKGGDVK---IGKPYVEGAKVVAEVEKH 65 (101)
T ss_pred EEEEEEecCCCeE---ECCeEcCCCEEEEEEEee
Confidence 4689999888865 333333355788888765
No 401
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.93 E-value=3.5e+02 Score=22.19 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=46.9
Q ss_pred EEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCCCCCcc
Q 041136 22 ILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTLSQMKF 98 (214)
Q Consensus 22 ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~~~~~F 98 (214)
||++| .|++--+ +++.+ ..+..|.|-+.+... .-.+.|+..|+.|. .+|..+.+.- ..|+ ..
T Consensus 1 I~V~GatG~~G~~--v~~~L~~~~~~V~~l~R~~~~----------~~~~~l~~~g~~vv-~~d~~~~~~l~~al~--g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQGRS--VVRALLSAGFSVRALVRDPSS----------DRAQQLQALGAEVV-EADYDDPESLVAALK--GV 65 (233)
T ss_dssp EEEETTTSHHHHH--HHHHHHHTTGCEEEEESSSHH----------HHHHHHHHTTTEEE-ES-TT-HHHHHHHHT--TC
T ss_pred CEEECCccHHHHH--HHHHHHhCCCCcEEEEeccch----------hhhhhhhcccceEe-ecccCCHHHHHHHHc--CC
Confidence 78888 7887544 44432 145679999998832 23567888899876 7777654331 1133 57
Q ss_pred cEEEEcCCCCC
Q 041136 99 DVIIFNFPHAG 109 (214)
Q Consensus 99 D~IiFNFPH~G 109 (214)
|.|+..=|...
T Consensus 66 d~v~~~~~~~~ 76 (233)
T PF05368_consen 66 DAVFSVTPPSH 76 (233)
T ss_dssp SEEEEESSCSC
T ss_pred ceEEeecCcch
Confidence 99999888664
No 402
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=22.89 E-value=94 Score=25.77 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=20.2
Q ss_pred CCCeEEEEecCch-hHH-HHH--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDF-SFS-DCL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SFS-~sL--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||.| ..+ ..| +..+ ..+|+.-.+|..
T Consensus 69 ~r~Vv~i~GDGs~f~m~~~eL~ta~~~--~lpv~iiVlnN~ 107 (193)
T cd03375 69 DLTVIVVSGDGDLAAIGGNHFIHAARR--NIDITVIVHNNQ 107 (193)
T ss_pred CCeEEEEeccchHhhccHHHHHHHHHh--CCCeEEEEEcCc
Confidence 3455788888884 332 223 3334 356777777764
No 403
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=22.84 E-value=5.3e+02 Score=22.76 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCCh--HHH---HhcCc-------------------cHHHHHHHHH
Q 041136 18 NNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSE--RTL---KTKHW-------------------TSQAHLQSLW 72 (214)
Q Consensus 18 ~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~--~~l---~~kY~-------------------~a~~ni~~L~ 72 (214)
.+.++|=||=| +.--.+|..+.+ .+|+.+=|-.. ++| .++-. ..++-.+.||
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35678889988 333333333333 36888765422 222 11210 1123334444
Q ss_pred hCCCEEEEccccccCCCCCC-CC-CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-
Q 041136 73 SRGCLVLHGVNVHTMDRHPT-LS-QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT- 149 (214)
Q Consensus 73 ~~g~~Vl~~VDAt~L~~~~~-~~-~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT- 149 (214)
+ -++-+.-+|+++...-.. .. ..+||+|+.-|=--.. ..+++--..=+++...+|+|||.+.+.
T Consensus 133 ~-~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a------------~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 133 R-AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA------------CKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp H-HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-------------SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred H-hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH------------cCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 355567788888654322 11 2469999988743221 223333333445567899999997444
Q ss_pred ecCCC------------CCCcccHhhHHHhcCCEEEEEe
Q 041136 150 LRDDH------------PYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 150 l~~~~------------Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
..+.. +.+.=.|.+.-+++|+.+.+..
T Consensus 200 ~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 200 VLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred EcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 22211 3456667788889999998865
No 404
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.60 E-value=97 Score=27.78 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCCeEEEEecCchhH--HHHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSF--SDCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSF--S~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||+|-. -..|..+...+.+|+.-.+|..
T Consensus 78 d~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~ 116 (280)
T PRK11869 78 ELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQ 116 (280)
T ss_pred CCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECH
Confidence 456688999999776 3566554333567888888875
No 405
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=22.53 E-value=2e+02 Score=28.59 Aligned_cols=66 Identities=9% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCCCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
...++|++||-|+-..-.|.. ..++ ..+|+.-...+..++- ....-++...+.|+.++++...+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G-a~~Vtlv~r~~~~~mp----a~~~ei~~a~~eGV~i~~~~~~~~i 387 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG-AESVTILYRRTREEMP----ANRAEIEEALAEGVSLRELAAPVSI 387 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEeeecCcccCC----CCHHHHHHHHHcCCcEEeccCcEEE
Confidence 457899999999987664432 2233 2244444433433332 1122244445578888876554433
No 406
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=22.46 E-value=5.1e+02 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=42.1
Q ss_pred CEEEEccccccCCCCC--CCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 76 CLVLHGVNVHTMDRHP--TLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 76 ~~Vl~~VDAt~L~~~~--~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
-.+++--|++.-.-.. .++..+||.|=-.|=.+ ...+ -+=..-++.+++.+|+|||.+.-|+-
T Consensus 173 ~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet-------------ee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 173 TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET-------------EESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeecc-------------HHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 3677888888533211 13455599999998755 5432 12234456789999999999999943
No 407
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=22.43 E-value=1e+02 Score=27.72 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=25.6
Q ss_pred CeEEEEe----cCchhHHHHHHHHhCC---CCcEEEeecCChH
Q 041136 20 QRILLVG----EGDFSFSDCLARAFGS---ATNMVASSLDSER 55 (214)
Q Consensus 20 ~~ILlVG----eGnFSFS~sLa~~~~~---~~~l~ATs~ds~~ 55 (214)
-||+-.| |.-+|-|..|.+..+. ...|+||=+|+..
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~a 159 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEV 159 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHH
Confidence 5777776 7778888777776532 4679999888753
No 408
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=22.37 E-value=82 Score=30.56 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCCeEEEEecCchhHHH-HH--HHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CL--ARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sL--a~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|-|+. .| |..++ .+++...++..
T Consensus 436 ~~~Vv~i~GDG~f~m~~~eL~Ta~~~~--l~i~~vV~NN~ 473 (566)
T PRK07282 436 DKEVILFVGDGGFQMTNQELAILNIYK--VPIKVVMLNNH 473 (566)
T ss_pred CCcEEEEEcchhhhccHHHHHHHHHhC--CCeEEEEEeCC
Confidence 44568999999999985 33 44454 46777777753
No 409
>PRK06163 hypothetical protein; Provisional
Probab=22.32 E-value=65 Score=27.24 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCCeEEEEecCchhHHH-HHHHH--hCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD-CLARA--FGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sLa~~--~~~~~~l~ATs~ds~ 54 (214)
+.+.|+++|||.|.++. .|+.. +. ..+++.-.++..
T Consensus 75 ~r~Vv~i~GDG~f~m~~~eL~Ta~~~~-~lpi~ivV~NN~ 113 (202)
T PRK06163 75 KRRVIALEGDGSLLMQLGALGTIAALA-PKNLTIIVMDNG 113 (202)
T ss_pred CCeEEEEEcchHHHHHHHHHHHHHHhc-CCCeEEEEEcCC
Confidence 45679999999998762 23322 31 246777777764
No 410
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=22.30 E-value=1.2e+02 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCCeEEEEecCch---hHHHHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDF---SFSDCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnF---SFS~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|.+.|||.| +|. .|......+.+|+.-.+|..
T Consensus 87 ~~~Vv~i~GDG~~~~~g~~-~l~ta~~~~l~i~ivVlNN~ 125 (237)
T cd02018 87 KKDVVVIGGDGATYDIGFG-ALSHSLFRGEDITVIVLDNE 125 (237)
T ss_pred CCcEEEEeCchHHHhccHH-HHHHHHHcCCCeEEEEECCc
Confidence 4455667799965 454 23333223467888888874
No 411
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=22.22 E-value=2.3e+02 Score=25.05 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCE
Q 041136 66 AHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGE 145 (214)
Q Consensus 66 ~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~ 145 (214)
.-|++|+..|+..+..+....... ..+....+...-+.||-.+..+ .+.+..|+.-....+.+++.
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~-~~~~~~GI~~~~lpipDg~aPs-------------~~~i~~~l~~i~~~l~~g~~ 172 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYND-GEITSAGINVHELIFPDGDAPT-------------VDIVSNWLTIVNNVIKNNRA 172 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCH-HHHHHcCCeEEEeecCCCCCCC-------------HHHHHHHHHHHHHHHhcCCe
Confidence 457999999999888763322211 1234455666777777533321 23455565555666677776
Q ss_pred EEEEecCC
Q 041136 146 VHVTLRDD 153 (214)
Q Consensus 146 i~VTl~~~ 153 (214)
|.|-=..|
T Consensus 173 VaVHC~AG 180 (241)
T PTZ00393 173 VAVHCVAG 180 (241)
T ss_pred EEEECCCC
Confidence 65543333
No 412
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.21 E-value=1.2e+02 Score=24.69 Aligned_cols=81 Identities=11% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.| -|...-+ |++.+- .+.+|++++.+... ..+.++.|+..+. ..++..|.++.+....+ .
T Consensus 6 ~~~ilItGasg~iG~~--l~~~l~~~g~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 6 GRVALVTGAARGIGRA--IAVRLAADGAEVIVVDICGDD--------AAATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCEEEEcCCCCcHHHH--HHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 56899999 5555433 554431 24578888776422 1223445555554 34566677764431111 1
Q ss_pred -----CCcccEEEEcCCCCC
Q 041136 95 -----QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G 109 (214)
-..+|.||.|-.-.+
T Consensus 76 ~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 76 AGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHhCCCCEEEECCCCCC
Confidence 135898887764443
No 413
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=22.02 E-value=45 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=30.3
Q ss_pred HHHhccCCCCEEEEEecCCCCCCcccHh------hHHH-hcCCEEEEEecCC
Q 041136 135 NGREMLGEGGEVHVTLRDDHPYNQWNVM------GLAD-KLGLVLKEKVEFL 179 (214)
Q Consensus 135 Sa~~lL~~~G~i~VTl~~~~Py~~W~i~------~lA~-~~gl~l~~~~~F~ 179 (214)
.++.+|++||.+++.+--|.+.-.||.- .||. -.|+.....+.++
T Consensus 96 ~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs~~ 147 (177)
T PF03269_consen 96 KIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFSGD 147 (177)
T ss_pred HHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeeeccC
Confidence 3678999999999998888876667643 2333 2366666644443
No 414
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=21.99 E-value=95 Score=25.41 Aligned_cols=13 Identities=54% Similarity=1.027 Sum_probs=6.2
Q ss_pred CeEEEEecCchhH
Q 041136 20 QRILLVGEGDFSF 32 (214)
Q Consensus 20 ~~ILlVGeGnFSF 32 (214)
..|+++|||.|-+
T Consensus 70 ~vv~i~GDG~f~~ 82 (183)
T cd02005 70 RVILLVGDGSFQM 82 (183)
T ss_pred eEEEEECCchhhc
Confidence 3444555555544
No 415
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=21.99 E-value=1.1e+02 Score=29.82 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCCeEEEEecCchhHHH-HHHHHhCCCCcEEEeecCC
Q 041136 18 NNQRILLVGEGDFSFSD-CLARAFGSATNMVASSLDS 53 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~-sLa~~~~~~~~l~ATs~ds 53 (214)
+...|+++|||.|-|+. .|......+..++...++.
T Consensus 426 ~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN 462 (575)
T TIGR02720 426 DRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSN 462 (575)
T ss_pred CCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeC
Confidence 34578999999999975 4444322234566666664
No 416
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=21.90 E-value=5.9e+02 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=30.1
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+|.|+.=.|- +..++..-+......|.++++|.+.=+
T Consensus 105 ~~~d~vl~~~PK-----------------~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 105 QQPGVVLIKVPK-----------------TLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred CCCCEEEEEeCC-----------------CHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 348999998885 345777778888999999999876633
No 417
>PRK08251 short chain dehydrogenase; Provisional
Probab=21.82 E-value=1.4e+02 Score=24.54 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=40.1
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CC-EEEEccccccCCCCCCC
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GC-LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~-~Vl~~VDAt~L~~~~~~ 93 (214)
++++|+.| .|..- .+|++++. .+.+|++++.+... + .+-.+.+... +. ...+.+|.++.+....+
T Consensus 2 ~k~vlItGas~giG--~~la~~l~~~g~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 71 (248)
T PRK08251 2 RQKILITGASSGLG--AGMAREFAAKGRDLALCARRTDR-L-------EELKAELLARYPGIKVAVAALDVNDHDQVFEV 71 (248)
T ss_pred CCEEEEECCCCHHH--HHHHHHHHHcCCEEEEEeCCHHH-H-------HHHHHHHHhhCCCceEEEEEcCCCCHHHHHHH
Confidence 35789998 55443 34555532 23578888765422 1 1112223222 33 34567888876532110
Q ss_pred ------CCCcccEEEEcC
Q 041136 94 ------SQMKFDVIIFNF 105 (214)
Q Consensus 94 ------~~~~FD~IiFNF 105 (214)
.-...|.||.|-
T Consensus 72 ~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 72 FAEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 124589988773
No 418
>PRK07677 short chain dehydrogenase; Provisional
Probab=21.78 E-value=1.3e+02 Score=24.99 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=41.6
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~--- 93 (214)
++++|+.|=+.. -..++++.+. .+.+|++++.+.. .+ .+..+.++..+ ...++.+|.++.+....+
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKE-KL-------EEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 367899994332 2233444421 2457888877632 11 12233344333 455688898875432111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.-...|.||.|-
T Consensus 72 ~~~~~~~id~lI~~a 86 (252)
T PRK07677 72 IDEKFGRIDALINNA 86 (252)
T ss_pred HHHHhCCccEEEECC
Confidence 113689999985
No 419
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=21.71 E-value=1.2e+02 Score=25.15 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=19.8
Q ss_pred CCCeEEEEecCchhHHH---HHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDFSFSD---CLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~---sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|+++|||.|-++. ..+..++ ..+|+...++..
T Consensus 66 ~~~Vv~i~GDG~f~m~~~eL~ta~~~~-l~~i~ivV~NN~ 104 (188)
T cd03371 66 DRKVVCIDGDGAALMHMGGLATIGGLA-PANLIHIVLNNG 104 (188)
T ss_pred CCcEEEEeCCcHHHhhccHHHHHHHcC-CCCcEEEEEeCc
Confidence 34557788888886653 2223332 125666666654
No 420
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.65 E-value=1.8e+02 Score=19.55 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=23.5
Q ss_pred cCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 140 LGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 140 L~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
+.+|+.+.| +.+ .|....||...|++.|+.+.
T Consensus 22 ~~~g~~l~v-~~d-~~~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 22 LEAGGEIEV-LVD-NEVAKENVSRFAESRGYEVS 53 (67)
T ss_pred cCCCCEEEE-EEc-ChhHHHHHHHHHHHcCCEEE
Confidence 455666655 444 45678899999999999994
No 421
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.57 E-value=1.5e+02 Score=28.08 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=37.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecC--ChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAF-GSATNMVASSLD--SERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~d--s~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.++++.+.++++..++ |++.+ ..+..+++++.. +.+. .+.+..+...++.|+.+.|...+.+. ++
T Consensus 325 ~Gkrv~i~~g~~~~~~--l~~~l~elGmevv~~~t~~~~~~d--------~~~l~~~~~~~~~v~~~~d~~e~~~~--i~ 392 (456)
T TIGR01283 325 KGKKAAIYTGGVKSWS--LVSALQDLGMEVVATGTQKGTEED--------YARIRELMGEGTVMLDDANPRELLKL--LL 392 (456)
T ss_pred CCCEEEEEcCCchHHH--HHHHHHHCCCEEEEEeeecCCHHH--------HHHHHHHcCCCeEEEeCCCHHHHHHH--Hh
Confidence 5789988899987775 44432 123455555422 2211 11233333335556555666655442 23
Q ss_pred CCcccEEEE
Q 041136 95 QMKFDVIIF 103 (214)
Q Consensus 95 ~~~FD~IiF 103 (214)
....|.+|-
T Consensus 393 ~~~pDl~ig 401 (456)
T TIGR01283 393 EYKADLLIA 401 (456)
T ss_pred hcCCCEEEE
Confidence 334555554
No 422
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.57 E-value=2.6e+02 Score=23.19 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=43.3
Q ss_pred CCeEEEEecCch-hHHHHHHHHhC-CCCcEEEeecCChHHHHhcC---ccHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 19 NQRILLVGEGDF-SFSDCLARAFG-SATNMVASSLDSERTLKTKH---WTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 19 ~~~ILlVGeGnF-SFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY---~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++||+.|=+.| ....++++.+. .+.+|++.+....+.....- ++.....+.++..+. ...+.+|.++......
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 84 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR 84 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 467999996544 23444555531 24578887654211100000 011122334444443 5567888887553111
Q ss_pred ----C--CCCcccEEEEcC
Q 041136 93 ----L--SQMKFDVIIFNF 105 (214)
Q Consensus 93 ----~--~~~~FD~IiFNF 105 (214)
. .....|.||.|-
T Consensus 85 ~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 85 VFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHhCCCCCEEEECC
Confidence 1 124689887764
No 423
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=1.2e+02 Score=25.11 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=18.2
Q ss_pred CCCeEEEE-ecCchhHHHHHHHHhCC
Q 041136 18 NNQRILLV-GEGDFSFSDCLARAFGS 42 (214)
Q Consensus 18 ~~~~ILlV-GeGnFSFS~sLa~~~~~ 42 (214)
.-++|.|+ |||||-=....++.-|.
T Consensus 110 ~~D~ivl~SgD~DF~p~v~~~~~~G~ 135 (181)
T COG1432 110 NVDTIVLFSGDGDFIPLVEAARDKGK 135 (181)
T ss_pred CCCEEEEEcCCccHHHHHHHHHHcCC
Confidence 45565555 99999888777777664
No 424
>PRK06197 short chain dehydrogenase; Provisional
Probab=21.36 E-value=1.7e+02 Score=25.31 Aligned_cols=80 Identities=13% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCCCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CC-EEEEccccccCCCC
Q 041136 16 YTNNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GC-LVLHGVNVHTMDRH 90 (214)
Q Consensus 16 ~~~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~-~Vl~~VDAt~L~~~ 90 (214)
-..+++||+.| -|..-.+ +|+.+. .+.+|+.++.+.+. . .+.++.|++. +. ...+.+|.++.+..
T Consensus 13 ~~~~k~vlItGas~gIG~~--~a~~l~~~G~~vi~~~r~~~~-~-------~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v 82 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYE--TAAALAAKGAHVVLAVRNLDK-G-------KAAAARITAATPGADVTLQELDLTSLASV 82 (306)
T ss_pred cCCCCEEEEcCCCCcHHHH--HHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHHhCCCCceEEEECCCCCHHHH
Confidence 34568899999 4544444 555432 24578888876432 1 1122333321 22 34667898876642
Q ss_pred CCC------CCCcccEEEEcC
Q 041136 91 PTL------SQMKFDVIIFNF 105 (214)
Q Consensus 91 ~~~------~~~~FD~IiFNF 105 (214)
..+ ...+.|.||.|=
T Consensus 83 ~~~~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 83 RAAADALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHHHHHhhCCCCCEEEECC
Confidence 211 124689998884
No 425
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=21.35 E-value=1.9e+02 Score=26.92 Aligned_cols=81 Identities=14% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHHH-------hcC--cc--HHHHHHHHHhCCCEEEEccc
Q 041136 17 TNNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTLK-------TKH--WT--SQAHLQSLWSRGCLVLHGVN 83 (214)
Q Consensus 17 ~~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~-------~kY--~~--a~~ni~~L~~~g~~Vl~~VD 83 (214)
...++|++||=| .++.+..|++. + .++ |.+|..+.+- ..| +. ...-++.+++.|+.+..+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g--~~V--~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~ 212 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-G--YDV--TIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTE 212 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-C--CeE--EEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 556899999977 67777777664 2 222 3344332210 001 11 23345678888999988876
Q ss_pred cccCCCCCCCCCCcccEEEE
Q 041136 84 VHTMDRHPTLSQMKFDVIIF 103 (214)
Q Consensus 84 At~L~~~~~~~~~~FD~IiF 103 (214)
+.+--...... ..||.||+
T Consensus 213 v~~~v~~~~~~-~~~d~vvl 231 (457)
T PRK11749 213 VGRDITLDELR-AGYDAVFI 231 (457)
T ss_pred ECCccCHHHHH-hhCCEEEE
Confidence 43211100111 45888886
No 426
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.26 E-value=1e+02 Score=29.62 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCCeEEEEecCchhHH-HHHH--HHhCCCCcEEEeecCC
Q 041136 18 NNQRILLVGEGDFSFS-DCLA--RAFGSATNMVASSLDS 53 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS-~sLa--~~~~~~~~l~ATs~ds 53 (214)
+...|+++|||.|-|+ ..|. ..+ +.+|+...++.
T Consensus 419 ~~~vv~i~GDG~f~~~~~eL~ta~~~--~l~v~ivV~NN 455 (548)
T PRK08978 419 DDTVICVSGDGSFMMNVQELGTIKRK--QLPVKIVLLDN 455 (548)
T ss_pred CCcEEEEEccchhhccHHHHHHHHHh--CCCeEEEEEeC
Confidence 4567889999999987 3443 344 45677777765
No 427
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=21.22 E-value=93 Score=25.24 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=21.6
Q ss_pred HHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 56 TLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 56 ~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
+...-|+++..||..|++.||+..+-
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~A 66 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHA 66 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEe
Confidence 33446899999999999999998874
No 428
>PRK06483 dihydromonapterin reductase; Provisional
Probab=21.17 E-value=2.1e+02 Score=23.37 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=41.5
Q ss_pred CCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC---
Q 041136 19 NQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 19 ~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~--- 93 (214)
.+++|+.|= |..- .++|+.+. .+.+|++++.+.++. .+.++..|+. .+.+|+++.+....+
T Consensus 2 ~k~vlItGas~gIG--~~ia~~l~~~G~~V~~~~r~~~~~-----------~~~~~~~~~~-~~~~D~~~~~~~~~~~~~ 67 (236)
T PRK06483 2 PAPILITGAGQRIG--LALAWHLLAQGQPVIVSYRTHYPA-----------IDGLRQAGAQ-CIQADFSTNAGIMAFIDE 67 (236)
T ss_pred CceEEEECCCChHH--HHHHHHHHHCCCeEEEEeCCchhH-----------HHHHHHcCCE-EEEcCCCCHHHHHHHHHH
Confidence 357899984 4443 34555542 356888887765321 2334445654 467888875442111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
.-..+|.+|.|=
T Consensus 68 ~~~~~~~id~lv~~a 82 (236)
T PRK06483 68 LKQHTDGLRAIIHNA 82 (236)
T ss_pred HHhhCCCccEEEECC
Confidence 113589988884
No 429
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.14 E-value=5.1e+02 Score=21.89 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++++|+.|= |.+= .++++.+ ..+.++++++.+..+.+.. .. . +....+..|+++....... -.
T Consensus 14 ~k~~lITGas~gIG--~ala~~l~~~G~~Vi~~~r~~~~~~~~----------~~-~-~~~~~~~~D~~~~~~~~~~-~~ 78 (245)
T PRK12367 14 GKRIGITGASGALG--KALTKAFRAKGAKVIGLTHSKINNSES----------ND-E-SPNEWIKWECGKEESLDKQ-LA 78 (245)
T ss_pred CCEEEEEcCCcHHH--HHHHHHHHHCCCEEEEEECCchhhhhh----------hc-c-CCCeEEEeeCCCHHHHHHh-cC
Confidence 468999984 4333 3344443 2346888888765332211 01 1 1123456777765432111 13
Q ss_pred cccEEEEcC
Q 041136 97 KFDVIIFNF 105 (214)
Q Consensus 97 ~FD~IiFNF 105 (214)
..|.+|.|-
T Consensus 79 ~iDilVnnA 87 (245)
T PRK12367 79 SLDVLILNH 87 (245)
T ss_pred CCCEEEECC
Confidence 589998884
No 430
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.12 E-value=2e+02 Score=24.05 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CC-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.| -|..- .++++.+. .+.+|++++.+.+. + .+..+.+... +. ...+.+|.++.+....
T Consensus 7 ~~k~~lItGas~giG--~~ia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (265)
T PRK07062 7 EGRVAVVTGGSSGIG--LATVELLLEAGASVAICGRDEER-L-------ASAEARLREKFPGARLLAARCDVLDEADVAA 76 (265)
T ss_pred CCCEEEEeCCCchHH--HHHHHHHHHCCCeEEEEeCCHHH-H-------HHHHHHHHhhCCCceEEEEEecCCCHHHHHH
Confidence 357899999 34333 34665542 34678888876432 1 1223334332 33 3356778887554211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-...|.+|.|=
T Consensus 77 ~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 77 FAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred HHHHHHHhcCCCCEEEECC
Confidence 1 124589988874
No 431
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.99 E-value=79 Score=26.46 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCeEEEEe---cCchhHHHHHHHHhCCCC-----cEEEeecCChHHHHhcCcc---------------------------
Q 041136 19 NQRILLVG---EGDFSFSDCLARAFGSAT-----NMVASSLDSERTLKTKHWT--------------------------- 63 (214)
Q Consensus 19 ~~~ILlVG---eGnFSFS~sLa~~~~~~~-----~l~ATs~ds~~~l~~kY~~--------------------------- 63 (214)
.++|.||| =|==|..+.||+.++..- -|...+--|..++.++|.+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 35688887 788889999998875210 0111111122222222221
Q ss_pred ---HHHHHHHHHhCCCEEEEccccccCCC
Q 041136 64 ---SQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 64 ---a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.++|.+.|++.|..|+.+.|...|-+
T Consensus 82 ~v~~~enr~~l~~~g~vv~L~~~~e~l~~ 110 (172)
T COG0703 82 AVLSEENRNLLKKRGIVVYLDAPFETLYE 110 (172)
T ss_pred cccCHHHHHHHHhCCeEEEEeCCHHHHHH
Confidence 24778888888888888888876644
No 432
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.97 E-value=1.9e+02 Score=24.25 Aligned_cols=77 Identities=13% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCC-C
Q 041136 18 NNQRILLVGEGD-FSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPT-L 93 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~-~ 93 (214)
.++++|+.|-+. .-.+ +++++ ..+.+|+.++.+.+. + ++..+.++..+.. .++.+|.++...... +
T Consensus 9 ~~~~vlItGasggIG~~--~a~~l~~~G~~Vi~~~r~~~~-~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAA--IALAFAEAGADVLIAARTESQ-L-------DEVAEQIRAAGRRAHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCCEEEEECCCChHHHH--HHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 367899999544 3333 44432 124588888776422 1 1223344444443 456788887654211 1
Q ss_pred C-----CCcccEEEEc
Q 041136 94 S-----QMKFDVIIFN 104 (214)
Q Consensus 94 ~-----~~~FD~IiFN 104 (214)
. -.+.|.||.|
T Consensus 79 ~~~~~~~~~id~vi~~ 94 (263)
T PRK07814 79 GQAVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHHHcCCCCEEEEC
Confidence 0 1357877665
No 433
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.95 E-value=4.9e+02 Score=21.65 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=42.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.|=+ =-..+++|+.+. .+.+|+.++..+.+.+ .+..+.++. .|. ...+.+|+++.+....+
T Consensus 7 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 7 KGKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEA-------NKIAEDLEQKYGIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 35788998832 122334554432 2457777654343322 222334433 343 45678899875432111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.++|.||.|=
T Consensus 79 ~~~~~~~g~id~lv~nA 95 (260)
T PRK08416 79 KKIDEDFDRVDFFISNA 95 (260)
T ss_pred HHHHHhcCCccEEEECc
Confidence 124689999885
No 434
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.93 E-value=2.1e+02 Score=24.45 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=31.4
Q ss_pred CCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 18 NNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
.+++||+.|.|-.--. ..+|+.+|. .+|++++.+. +.++.++++|+...++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~------------~r~~~a~~~Ga~~~i~ 171 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSP------------DRRELALSFGATALAE 171 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCH------------HHHHHHHHcCCcEecC
Confidence 6889999999877643 345777752 3477774322 1245556677754443
No 435
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=20.92 E-value=1.8e+02 Score=24.59 Aligned_cols=82 Identities=11% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCCeEEEEec---CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGE---GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGe---GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.|= +..-.+ +|+.+. .+.+|+.+..+.+.. ..++.++++++.+ ..+.+.+|+++.+....
T Consensus 5 ~~k~~lItGas~~~GIG~a--ia~~la~~G~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWG--IAQQLHAAGAELGITYLPDEKG------RFEKKVRELTEPLNPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred CCcEEEEeCCCCCCchHHH--HHHHHHHCCCEEEEEecCcccc------hHHHHHHHHHhccCcceEeecCcCCHHHHHH
Confidence 3578999994 355444 555542 345777665543211 1234455565443 23467789887665321
Q ss_pred C------CCCcccEEEEcCCC
Q 041136 93 L------SQMKFDVIIFNFPH 107 (214)
Q Consensus 93 ~------~~~~FD~IiFNFPH 107 (214)
+ .-.+.|.+|.|--.
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHcCCCCEEEEcccc
Confidence 1 12468998888643
No 436
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.91 E-value=3.4e+02 Score=20.92 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=30.1
Q ss_pred EEEEecCchh---HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE
Q 041136 22 ILLVGEGDFS---FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL 77 (214)
Q Consensus 22 ILlVGeGnFS---FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~ 77 (214)
||+|-.||-. .|-+|++++.. .++.+.|-=... .+-....++.|++.|+.
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~-~~~~v~SaG~~~-----~~~~~~a~~~l~e~Gid 53 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLG-DEWEVYSAGIEA-----HGLNPNAVKAMKEVGID 53 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcC-CCEEEEcCCCCC-----CCcCHHHHHHHHHcCCC
Confidence 6888999998 88899988742 345444322211 12233456667766654
No 437
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=20.87 E-value=3.2e+02 Score=24.49 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecC
Q 041136 15 HYTNNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLD 52 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~d 52 (214)
+...+++||+.|-|-.-- +..+|+.+| ..++++|...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~ 219 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDIN 219 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCC
Confidence 456789999999887653 455678876 2368887543
No 438
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.87 E-value=2.3e+02 Score=26.37 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCeEEEEecCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcC-cc-HHHHHHHHHhCCCEEEEccccccCCCCC----
Q 041136 19 NQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKH-WT-SQAHLQSLWSRGCLVLHGVNVHTMDRHP---- 91 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY-~~-a~~ni~~L~~~g~~Vl~~VDAt~L~~~~---- 91 (214)
.++|++||-|.-..-.|.. ..++ ..|+.- +..+.+.... ++ +..-.+.|++.|+.++.+..++.+....
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli--~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~ 223 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLI--HRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNEVTFK 223 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEE--ecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEEC
Confidence 4799999988654432221 2233 233332 2222222111 11 2344577888999999887666664310
Q ss_pred CCCCCcccEEEEcC
Q 041136 92 TLSQMKFDVIIFNF 105 (214)
Q Consensus 92 ~~~~~~FD~IiFNF 105 (214)
.-....+|.|++=.
T Consensus 224 ~g~~~~~D~vl~a~ 237 (438)
T PRK13512 224 SGKVEHYDMIIEGV 237 (438)
T ss_pred CCCEEEeCEEEECc
Confidence 01124578888753
No 439
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.87 E-value=5.1e+02 Score=21.75 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=40.1
Q ss_pred eEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE--EEEccccccCCCCCCC---
Q 041136 21 RILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL--VLHGVNVHTMDRHPTL--- 93 (214)
Q Consensus 21 ~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--Vl~~VDAt~L~~~~~~--- 93 (214)
++|+.| -|.. ..++++.+- .+.+|++++.+.+ .+ ++..+.++..+.. ....+|.++.+....+
T Consensus 2 ~vlItGas~gi--G~~la~~la~~G~~vv~~~r~~~-~~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 2 RCFVTGAASGI--GRATALRLAAQGAELFLTDRDAD-GL-------AQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred EEEEeCCCCHH--HHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 688888 4433 334555432 2457888776542 22 2234455544442 3357888765432111
Q ss_pred ---CCCcccEEEEcC
Q 041136 94 ---SQMKFDVIIFNF 105 (214)
Q Consensus 94 ---~~~~FD~IiFNF 105 (214)
...+.|.||.|-
T Consensus 72 ~~~~~~~id~lv~~a 86 (272)
T PRK07832 72 IHAAHGSMDVVMNIA 86 (272)
T ss_pred HHHhcCCCCEEEECC
Confidence 124589888775
No 440
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.84 E-value=1.5e+02 Score=24.81 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=40.8
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC----
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL---- 93 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~---- 93 (214)
++||+.| -|.. ..+|++.+. .+.+|+.+..+.+. + .+..+.++..+-...+.+|.++.+....+
T Consensus 3 ~~vlItGas~gI--G~~la~~l~~~G~~v~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGI--GQALAREYARQGATLGLVARRTDA-L-------QAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHH--HHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 5788888 4433 333555432 24578888766422 1 11223333333455678899875432111
Q ss_pred --CCCcccEEEEcC
Q 041136 94 --SQMKFDVIIFNF 105 (214)
Q Consensus 94 --~~~~FD~IiFNF 105 (214)
.....|.||.|-
T Consensus 73 ~~~~g~id~lv~~a 86 (257)
T PRK07024 73 IAAHGLPDVVIANA 86 (257)
T ss_pred HHhCCCCCEEEECC
Confidence 123579888773
No 441
>PRK06125 short chain dehydrogenase; Provisional
Probab=20.84 E-value=1.8e+02 Score=24.30 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=42.2
Q ss_pred CCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CC-EEEEccccccCCCCCCC-
Q 041136 19 NQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 19 ~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~-~Vl~~VDAt~L~~~~~~- 93 (214)
++++|+.|= |..-- ++++.+. .+.+|++++.+.+ .+ .+..+.|+.. +. ...+.+|.++......+
T Consensus 7 ~k~vlItG~~~giG~--~ia~~l~~~G~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 76 (259)
T PRK06125 7 GKRVLITGASKGIGA--AAAEAFAAEGCHLHLVARDAD-AL-------EALAADLRAAHGVDVAVHALDLSSPEAREQLA 76 (259)
T ss_pred CCEEEEeCCCchHHH--HHHHHHHHcCCEEEEEeCCHH-HH-------HHHHHHHHhhcCCceEEEEecCCCHHHHHHHH
Confidence 578999994 44443 3554431 2458888887643 21 2223444432 33 44677888875542111
Q ss_pred -CCCcccEEEEcC
Q 041136 94 -SQMKFDVIIFNF 105 (214)
Q Consensus 94 -~~~~FD~IiFNF 105 (214)
...+.|.||.|-
T Consensus 77 ~~~g~id~lv~~a 89 (259)
T PRK06125 77 AEAGDIDILVNNA 89 (259)
T ss_pred HHhCCCCEEEECC
Confidence 124689888773
No 442
>PRK06101 short chain dehydrogenase; Provisional
Probab=20.52 E-value=4.8e+02 Score=21.39 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=53.3
Q ss_pred CeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCC-C-
Q 041136 20 QRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTL-S- 94 (214)
Q Consensus 20 ~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~-~- 94 (214)
.++|+.| -|..-.+ +++.+. .+.+|++++.+.+. ++++... .....+.+|+++.+....+ .
T Consensus 2 ~~vlItGas~giG~~--la~~L~~~G~~V~~~~r~~~~------------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 67 (240)
T PRK06101 2 TAVLITGATSGIGKQ--LALDYAKQGWQVIACGRNQSV------------LDELHTQSANIFTLAFDVTDHPGTKAALSQ 67 (240)
T ss_pred cEEEEEcCCcHHHHH--HHHHHHhCCCEEEEEECCHHH------------HHHHHHhcCCCeEEEeeCCCHHHHHHHHHh
Confidence 4688888 5544333 554432 24678888776321 1222211 1234567788875532111 1
Q ss_pred -CCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 95 -QMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 95 -~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
....|.+|.|-...... ...+... ..+..|-.-.....+.+...+..+|.|.
T Consensus 68 ~~~~~d~~i~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv 124 (240)
T PRK06101 68 LPFIPELWIFNAGDCEYM-DDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVV 124 (240)
T ss_pred cccCCCEEEEcCcccccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEE
Confidence 11358888775332111 1111111 1233344444445555556666677654
No 443
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=20.44 E-value=2.4e+02 Score=29.74 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCCCeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
..+++|++||-||-..-.| ++..+|. ..++.-...+..++ |....-++.+++.|+.++++...+.+
T Consensus 569 ~~Gk~VvVIGgG~tA~D~A~~a~rlGa-~~Vtiv~rr~~~em----~a~~~e~~~a~eeGI~~~~~~~p~~i 635 (1006)
T PRK12775 569 SLGKSVVVIGAGNTAMDCLRVAKRLGA-PTVRCVYRRSEAEA----PARIEEIRHAKEEGIDFFFLHSPVEI 635 (1006)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeecCcccC----CCCHHHHHHHHhCCCEEEecCCcEEE
Confidence 4679999999999888533 3444542 23332222233322 22233456778889999888766555
No 444
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.35 E-value=96 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=18.0
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeec
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSL 51 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ 51 (214)
=||+=|||||.=+...++..|. .++.-+.
T Consensus 103 ivLvSgD~Df~~~i~~lr~~G~--~V~v~~~ 131 (149)
T cd06167 103 IVLVSGDSDFVPLVERLRELGK--RVIVVGF 131 (149)
T ss_pred EEEEECCccHHHHHHHHHHcCC--EEEEEcc
Confidence 3566668888877777777753 4444333
No 445
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=20.24 E-value=87 Score=28.32 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCCeEEEEecCch-hHH-HHHHHHhCCCCcEEEeecCCh
Q 041136 18 NNQRILLVGEGDF-SFS-DCLARAFGSATNMVASSLDSE 54 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SFS-~sLa~~~~~~~~l~ATs~ds~ 54 (214)
+...|.++|||+| ++. ..|+.....+.+|+...+|..
T Consensus 88 d~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~ 126 (301)
T PRK05778 88 DLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNG 126 (301)
T ss_pred CCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCc
Confidence 3456888999997 343 123332222356777777754
No 446
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=20.21 E-value=1.4e+02 Score=31.17 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
++-.++|+.+.|+|+..++ +++.+ ..+..+++|+...... +-.+-++.+-..++.|+-+.|...|.+
T Consensus 316 ~~L~GKrv~i~~g~~~~~~--la~~l~elGmevv~~g~~~~~~------~d~~~~~~~~~~~~~vi~~~d~~el~~ 383 (917)
T PRK14477 316 ARLEGKRVVLFTGGVKTWS--MVNALRELGVEVLAAGTQNSTL------EDFARMKALMHKDAHIIEDTSTAGLLR 383 (917)
T ss_pred HHccCCEEEEECCCchHHH--HHHHHHHCCCEEEEEcCCCCCH------HHHHHHHHhcCCCCEEEECCCHHHHHH
Confidence 4568899999999997776 33332 1345788877543211 001113333333555655555555443
No 447
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.06 E-value=5.4e+02 Score=22.89 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++.||.||=|==+.+..|++.- ..|+|--+|..= .+.+++.- ..+-..++.=||-+..-. .+.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l---------~~~L~~~~~~~~n~~vi~~DaLk~d~~-~l~- 94 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRL---------AEVLKERFAPYDNLTVINGDALKFDFP-SLA- 94 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHH---------HHHHHHhcccccceEEEeCchhcCcch-hhc-
Confidence 348999999966556667788875 368888888631 11122221 123333444477765431 111
Q ss_pred CcccEEEEcCCCC
Q 041136 96 MKFDVIIFNFPHA 108 (214)
Q Consensus 96 ~~FD~IiFNFPH~ 108 (214)
.+++||-|-|=-
T Consensus 95 -~~~~vVaNlPY~ 106 (259)
T COG0030 95 -QPYKVVANLPYN 106 (259)
T ss_pred -CCCEEEEcCCCc
Confidence 689999999964
No 448
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.03 E-value=2.2e+02 Score=24.24 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=23.8
Q ss_pred CeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCCh
Q 041136 20 QRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSE 54 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~ 54 (214)
++|+++|=|.|-.+ ||+.+.. +.++++.--|.+
T Consensus 1 m~iiIiG~G~vG~~--va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRS--VARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHH--HHHHHHhCCCceEEEEcCHH
Confidence 57999999999888 8877643 356766655543
Done!