Query 041136
Match_columns 214
No_of_seqs 107 out of 286
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lpm_A Putative methyltransfer 98.4 1.7E-06 5.8E-11 73.0 10.8 153 15-179 45-202 (259)
2 3evz_A Methyltransferase; NYSG 98.2 1.1E-05 3.6E-10 66.1 11.0 147 16-175 53-203 (230)
3 3eey_A Putative rRNA methylase 98.2 3E-05 1E-09 61.8 13.1 157 16-187 20-182 (197)
4 1ixk_A Methyltransferase; open 98.2 2.1E-05 7.3E-10 68.9 12.4 151 14-174 114-271 (315)
5 1yzh_A TRNA (guanine-N(7)-)-me 98.1 2.7E-05 9.1E-10 63.4 10.6 140 18-176 41-180 (214)
6 3mti_A RRNA methylase; SAM-dep 98.0 4.1E-05 1.4E-09 60.5 9.9 121 16-155 20-140 (185)
7 3cgg_A SAM-dependent methyltra 98.0 3.4E-05 1.2E-09 60.3 9.2 129 17-176 45-173 (195)
8 3m4x_A NOL1/NOP2/SUN family pr 98.0 2.1E-05 7E-10 73.2 8.8 163 3-174 90-259 (456)
9 2yxl_A PH0851 protein, 450AA l 97.9 4.9E-05 1.7E-09 69.8 10.5 153 14-174 255-415 (450)
10 2qm3_A Predicted methyltransfe 97.9 0.00014 4.9E-09 64.9 13.1 130 18-176 172-307 (373)
11 3dh0_A SAM dependent methyltra 97.9 0.00019 6.4E-09 57.9 12.2 141 15-181 34-184 (219)
12 2fca_A TRNA (guanine-N(7)-)-me 97.9 5.7E-05 2E-09 62.0 8.8 146 11-175 30-176 (213)
13 2frn_A Hypothetical protein PH 97.8 7.3E-05 2.5E-09 64.1 9.7 127 16-174 123-253 (278)
14 3f4k_A Putative methyltransfer 97.8 0.00031 1.1E-08 57.9 13.0 141 15-183 43-201 (257)
15 3m6w_A RRNA methylase; rRNA me 97.8 4.4E-05 1.5E-09 71.1 8.0 162 3-174 86-255 (464)
16 4df3_A Fibrillarin-like rRNA/T 97.8 0.00034 1.2E-08 59.6 12.7 140 14-180 73-219 (233)
17 2vdv_E TRNA (guanine-N(7)-)-me 97.8 2.2E-05 7.4E-10 65.7 5.0 135 18-170 49-191 (246)
18 1kpg_A CFA synthase;, cyclopro 97.8 0.00045 1.5E-08 58.2 13.0 135 15-179 61-229 (287)
19 3hem_A Cyclopropane-fatty-acyl 97.7 0.0012 4.2E-08 56.2 15.7 143 15-180 69-245 (302)
20 3ajd_A Putative methyltransfer 97.7 6.9E-05 2.4E-09 64.0 7.8 156 13-174 78-237 (274)
21 3e23_A Uncharacterized protein 97.7 0.0001 3.5E-09 59.3 8.3 138 14-185 39-189 (211)
22 3bwc_A Spermidine synthase; SA 97.7 6.2E-05 2.1E-09 65.6 7.5 144 17-184 94-246 (304)
23 3kkz_A Uncharacterized protein 97.7 0.00024 8.1E-09 59.4 10.8 145 15-187 43-206 (267)
24 2ozv_A Hypothetical protein AT 97.7 9.9E-05 3.4E-09 62.5 8.5 151 15-176 33-192 (260)
25 2b3t_A Protein methyltransfera 97.7 0.00033 1.1E-08 59.4 11.7 141 17-174 108-259 (276)
26 1fbn_A MJ fibrillarin homologu 97.7 0.00049 1.7E-08 56.6 12.0 137 15-180 71-215 (230)
27 2pwy_A TRNA (adenine-N(1)-)-me 97.7 0.00027 9.4E-09 58.3 10.3 130 15-177 93-223 (258)
28 1sqg_A SUN protein, FMU protei 97.7 0.0002 6.8E-09 65.2 10.2 151 14-174 242-400 (429)
29 1g8a_A Fibrillarin-like PRE-rR 97.7 0.00058 2E-08 55.7 12.1 134 16-178 71-212 (227)
30 2kw5_A SLR1183 protein; struct 97.7 0.00084 2.9E-08 53.4 12.5 137 16-185 28-178 (202)
31 1o54_A SAM-dependent O-methylt 97.6 0.00027 9.1E-09 59.9 9.8 130 15-177 109-238 (277)
32 3vc1_A Geranyl diphosphate 2-C 97.6 0.00052 1.8E-08 59.0 11.7 144 16-187 115-278 (312)
33 3dmg_A Probable ribosomal RNA 97.6 0.0001 3.5E-09 66.6 7.4 136 18-179 233-374 (381)
34 4dzr_A Protein-(glutamine-N5) 97.6 5.7E-05 1.9E-09 60.1 5.0 146 17-174 29-188 (215)
35 3h2b_A SAM-dependent methyltra 97.6 0.00036 1.2E-08 55.6 9.7 130 19-180 42-184 (203)
36 2frx_A Hypothetical protein YE 97.6 0.00014 4.9E-09 67.7 8.2 143 18-169 117-266 (479)
37 4dcm_A Ribosomal RNA large sub 97.6 0.00011 3.7E-09 66.2 7.1 137 17-175 221-365 (375)
38 3dxy_A TRNA (guanine-N(7)-)-me 97.6 9.1E-05 3.1E-09 61.5 6.1 138 18-173 34-172 (218)
39 3bus_A REBM, methyltransferase 97.6 0.0015 5.2E-08 54.3 13.7 146 15-187 58-225 (273)
40 3l8d_A Methyltransferase; stru 97.6 0.00081 2.8E-08 54.7 11.5 132 16-179 51-201 (242)
41 4dmg_A Putative uncharacterize 97.6 0.00034 1.2E-08 63.6 10.0 143 11-173 206-352 (393)
42 3ujc_A Phosphoethanolamine N-m 97.5 0.00041 1.4E-08 57.1 9.4 137 15-179 52-207 (266)
43 3ocj_A Putative exported prote 97.5 0.00024 8.3E-09 60.9 8.3 139 16-177 116-290 (305)
44 1wxx_A TT1595, hypothetical pr 97.5 0.00025 8.7E-09 63.4 8.6 143 13-172 205-350 (382)
45 3dli_A Methyltransferase; PSI- 97.5 0.00047 1.6E-08 56.7 9.3 135 13-180 36-186 (240)
46 3ckk_A TRNA (guanine-N(7)-)-me 97.5 4.4E-05 1.5E-09 64.2 3.0 138 18-172 46-189 (235)
47 2ipx_A RRNA 2'-O-methyltransfe 97.5 0.0017 5.8E-08 53.3 12.5 136 15-179 74-218 (233)
48 1dus_A MJ0882; hypothetical pr 97.5 0.00098 3.4E-08 51.8 10.5 110 15-152 49-159 (194)
49 3mb5_A SAM-dependent methyltra 97.5 0.00057 2E-08 56.6 9.5 131 15-178 90-222 (255)
50 3p9n_A Possible methyltransfer 97.5 0.00079 2.7E-08 53.4 9.9 112 17-153 43-156 (189)
51 1xxl_A YCGJ protein; structura 97.5 0.00049 1.7E-08 56.8 9.0 136 14-178 17-174 (239)
52 1yb2_A Hypothetical protein TA 97.5 0.00046 1.6E-08 58.5 8.8 129 15-177 107-236 (275)
53 3sm3_A SAM-dependent methyltra 97.5 0.00046 1.6E-08 55.7 8.4 133 16-176 28-205 (235)
54 2b9e_A NOL1/NOP2/SUN domain fa 97.4 0.0014 4.8E-08 57.5 12.2 164 3-174 87-261 (309)
55 3g89_A Ribosomal RNA small sub 97.4 0.00083 2.9E-08 56.7 10.3 142 16-186 78-220 (249)
56 3k6r_A Putative transferase PH 97.4 0.00034 1.2E-08 61.0 7.5 126 15-173 122-252 (278)
57 2pjd_A Ribosomal RNA small sub 97.4 0.00014 4.8E-09 64.0 5.2 114 18-157 196-310 (343)
58 2fk8_A Methoxy mycolic acid sy 97.4 0.0012 3.9E-08 56.7 10.5 106 15-150 87-194 (318)
59 1ej0_A FTSJ; methyltransferase 97.4 0.00034 1.2E-08 53.3 6.4 128 16-167 20-151 (180)
60 3mgg_A Methyltransferase; NYSG 97.4 0.0019 6.6E-08 53.8 11.6 137 15-178 34-198 (276)
61 3grz_A L11 mtase, ribosomal pr 97.4 0.00061 2.1E-08 54.5 8.2 126 17-177 59-184 (205)
62 2o57_A Putative sarcosine dime 97.4 0.0023 7.8E-08 54.1 12.2 138 15-179 79-235 (297)
63 3g5l_A Putative S-adenosylmeth 97.4 0.0012 4.3E-08 54.3 10.2 135 15-180 41-218 (253)
64 1ve3_A Hypothetical protein PH 97.4 0.0018 6.2E-08 52.0 10.9 105 17-151 37-143 (227)
65 3e8s_A Putative SAM dependent 97.3 0.0015 5.2E-08 52.1 10.1 129 17-177 51-208 (227)
66 1ri5_A MRNA capping enzyme; me 97.3 0.0013 4.5E-08 55.0 10.1 112 17-151 63-175 (298)
67 1y8c_A S-adenosylmethionine-de 97.3 0.0012 4.2E-08 53.5 9.6 103 18-150 37-142 (246)
68 3dtn_A Putative methyltransfer 97.3 0.0016 5.4E-08 52.9 10.3 107 16-150 42-148 (234)
69 2igt_A SAM dependent methyltra 97.3 0.00089 3E-08 59.2 9.3 142 18-173 153-299 (332)
70 3dlc_A Putative S-adenosyl-L-m 97.3 0.00057 1.9E-08 54.4 7.3 102 21-149 46-147 (219)
71 1xtp_A LMAJ004091AAA; SGPP, st 97.3 0.00095 3.3E-08 54.7 8.7 135 15-177 90-237 (254)
72 3adn_A Spermidine synthase; am 97.3 0.00055 1.9E-08 59.7 7.5 112 17-150 82-198 (294)
73 4htf_A S-adenosylmethionine-de 97.3 0.0011 3.8E-08 55.8 8.8 134 19-179 69-233 (285)
74 1vl5_A Unknown conserved prote 97.2 0.0022 7.5E-08 53.1 10.5 135 15-178 34-190 (260)
75 2b78_A Hypothetical protein SM 97.2 0.00085 2.9E-08 60.3 8.5 157 13-184 206-367 (385)
76 2ex4_A Adrenal gland protein A 97.2 0.00065 2.2E-08 55.9 7.1 136 17-178 78-225 (241)
77 3id6_C Fibrillarin-like rRNA/T 97.2 0.015 5E-07 49.1 15.5 138 15-180 73-218 (232)
78 1qzz_A RDMB, aclacinomycin-10- 97.2 0.0053 1.8E-07 53.7 13.1 143 15-184 179-345 (374)
79 1xdz_A Methyltransferase GIDB; 97.2 0.0013 4.4E-08 54.4 8.6 133 17-179 69-203 (240)
80 1jsx_A Glucose-inhibited divis 97.2 0.0014 4.7E-08 52.3 8.5 125 18-179 65-189 (207)
81 3tma_A Methyltransferase; thum 97.2 0.0065 2.2E-07 53.3 13.1 140 15-178 200-339 (354)
82 4fsd_A Arsenic methyltransfera 97.1 0.0043 1.5E-07 55.2 12.0 137 17-174 82-247 (383)
83 3i53_A O-methyltransferase; CO 97.1 0.0065 2.2E-07 52.5 12.8 138 15-179 166-322 (332)
84 2r3s_A Uncharacterized protein 97.1 0.0055 1.9E-07 52.6 12.2 136 17-178 164-323 (335)
85 2ih2_A Modification methylase 97.1 0.0039 1.3E-07 55.4 11.5 134 17-170 38-186 (421)
86 1nkv_A Hypothetical protein YJ 97.1 0.0026 8.8E-08 52.3 9.5 137 15-179 33-188 (256)
87 3bkx_A SAM-dependent methyltra 97.1 0.015 5.1E-07 48.2 14.3 140 15-179 40-220 (275)
88 1i1n_A Protein-L-isoaspartate 97.1 0.0014 4.9E-08 53.1 7.7 108 16-155 75-187 (226)
89 3g2m_A PCZA361.24; SAM-depende 97.1 0.00067 2.3E-08 57.8 5.8 105 19-151 83-191 (299)
90 3a27_A TYW2, uncharacterized p 97.1 0.00065 2.2E-08 58.0 5.6 106 14-151 115-220 (272)
91 1i9g_A Hypothetical protein RV 97.1 0.0035 1.2E-07 52.5 10.0 106 15-150 96-203 (280)
92 1l3i_A Precorrin-6Y methyltran 97.1 0.0011 3.6E-08 51.5 6.3 124 15-172 30-154 (192)
93 1x19_A CRTF-related protein; m 97.0 0.016 5.6E-07 50.6 14.6 137 15-178 187-348 (359)
94 2fhp_A Methylase, putative; al 97.0 0.00035 1.2E-08 54.6 3.3 118 15-154 41-158 (187)
95 3gwz_A MMCR; methyltransferase 97.0 0.0077 2.6E-07 53.3 12.4 136 15-177 199-355 (369)
96 3lcc_A Putative methyl chlorid 97.0 0.0041 1.4E-07 50.7 9.9 136 20-182 68-211 (235)
97 1nt2_A Fibrillarin-like PRE-rR 97.0 0.011 3.6E-07 48.5 12.3 136 15-179 54-196 (210)
98 2as0_A Hypothetical protein PH 97.0 0.00084 2.9E-08 60.2 6.0 143 18-174 217-362 (396)
99 3hm2_A Precorrin-6Y C5,15-meth 97.0 0.0032 1.1E-07 48.6 8.5 128 15-175 22-150 (178)
100 1inl_A Spermidine synthase; be 97.0 0.00049 1.7E-08 59.7 4.1 113 17-151 89-206 (296)
101 3hnr_A Probable methyltransfer 97.0 0.0066 2.3E-07 48.6 10.6 128 17-176 44-199 (220)
102 2p7i_A Hypothetical protein; p 97.0 0.0022 7.5E-08 51.8 7.7 132 13-178 37-199 (250)
103 3e05_A Precorrin-6Y C5,15-meth 97.0 0.017 6E-07 45.9 12.8 125 15-171 37-161 (204)
104 3gjy_A Spermidine synthase; AP 96.9 0.0004 1.4E-08 61.7 3.3 114 20-154 91-204 (317)
105 2xvm_A Tellurite resistance pr 96.9 0.0025 8.7E-08 50.0 7.6 107 15-149 29-135 (199)
106 2esr_A Methyltransferase; stru 96.9 0.0019 6.5E-08 50.3 6.7 115 15-154 28-142 (177)
107 3c0k_A UPF0064 protein YCCW; P 96.9 0.0013 4.4E-08 59.1 6.3 146 13-172 215-364 (396)
108 3cc8_A Putative methyltransfer 96.9 0.014 4.7E-07 46.5 11.8 129 17-179 31-186 (230)
109 2ip2_A Probable phenazine-spec 96.9 0.012 4.1E-07 50.7 12.2 135 15-177 165-321 (334)
110 2p8j_A S-adenosylmethionine-de 96.9 0.0035 1.2E-07 49.7 8.1 112 14-152 19-130 (209)
111 2b2c_A Spermidine synthase; be 96.9 0.00042 1.4E-08 61.0 2.8 110 17-150 107-222 (314)
112 3ou2_A SAM-dependent methyltra 96.9 0.011 3.6E-07 47.0 10.9 106 13-150 41-146 (218)
113 1tw3_A COMT, carminomycin 4-O- 96.9 0.011 3.7E-07 51.5 11.8 138 15-179 180-340 (360)
114 2ift_A Putative methylase HI07 96.9 0.0032 1.1E-07 50.8 7.9 113 18-154 53-167 (201)
115 3bkw_A MLL3908 protein, S-aden 96.9 0.0097 3.3E-07 48.2 10.7 106 14-150 39-144 (243)
116 2h00_A Methyltransferase 10 do 96.8 0.025 8.7E-07 46.6 13.4 150 18-177 65-237 (254)
117 1uwv_A 23S rRNA (uracil-5-)-me 96.8 0.0098 3.3E-07 54.1 11.6 140 16-189 284-423 (433)
118 2b25_A Hypothetical protein; s 96.8 0.009 3.1E-07 51.9 11.0 107 15-150 102-219 (336)
119 2o07_A Spermidine synthase; st 96.8 0.00089 3E-08 58.5 4.4 111 17-150 94-209 (304)
120 1vlm_A SAM-dependent methyltra 96.8 0.016 5.4E-07 46.8 11.5 129 18-188 47-196 (219)
121 3njr_A Precorrin-6Y methylase; 96.8 0.013 4.4E-07 47.5 10.9 124 16-175 53-177 (204)
122 1xj5_A Spermidine synthase 1; 96.8 0.00074 2.5E-08 60.0 3.6 112 17-149 119-234 (334)
123 1iy9_A Spermidine synthase; ro 96.8 0.00081 2.8E-08 57.7 3.6 111 17-150 74-189 (275)
124 3p2e_A 16S rRNA methylase; met 96.7 0.0043 1.5E-07 51.5 7.8 150 17-186 23-193 (225)
125 2pxx_A Uncharacterized protein 96.7 0.0023 7.9E-08 50.7 5.9 119 17-150 41-159 (215)
126 3jwg_A HEN1, methyltransferase 96.7 0.01 3.4E-07 47.7 9.7 110 17-151 28-142 (219)
127 3u81_A Catechol O-methyltransf 96.7 0.0076 2.6E-07 49.0 9.1 112 16-149 56-169 (221)
128 2gpy_A O-methyltransferase; st 96.7 0.0029 1E-07 51.7 6.6 107 16-149 52-159 (233)
129 3mcz_A O-methyltransferase; ad 96.7 0.0091 3.1E-07 51.8 10.1 136 15-174 175-335 (352)
130 2pt6_A Spermidine synthase; tr 96.7 0.00067 2.3E-08 59.7 2.8 111 17-150 115-230 (321)
131 2nxc_A L11 mtase, ribosomal pr 96.7 0.009 3.1E-07 50.1 9.7 124 17-176 119-242 (254)
132 1uir_A Polyamine aminopropyltr 96.7 0.00076 2.6E-08 59.0 3.0 113 17-150 76-195 (314)
133 3o4f_A Spermidine synthase; am 96.7 0.0055 1.9E-07 53.9 8.5 115 17-149 82-197 (294)
134 3i9f_A Putative type 11 methyl 96.7 0.011 3.7E-07 45.5 9.4 133 15-186 14-156 (170)
135 3mq2_A 16S rRNA methyltransfer 96.7 0.014 4.9E-07 46.9 10.2 141 16-181 25-187 (218)
136 2zfu_A Nucleomethylin, cerebra 96.6 0.012 3.9E-07 47.2 9.5 116 13-176 62-177 (215)
137 2fyt_A Protein arginine N-meth 96.6 0.0082 2.8E-07 52.8 9.3 107 15-147 61-168 (340)
138 1ws6_A Methyltransferase; stru 96.6 0.0019 6.4E-08 49.5 4.6 110 18-153 41-150 (171)
139 2yxd_A Probable cobalt-precorr 96.6 0.015 5.1E-07 44.6 9.8 123 15-175 32-154 (183)
140 3ofk_A Nodulation protein S; N 96.6 0.0022 7.4E-08 51.5 5.1 109 14-151 47-155 (216)
141 3dr5_A Putative O-methyltransf 96.6 0.0067 2.3E-07 50.1 8.2 105 19-149 57-162 (221)
142 3tfw_A Putative O-methyltransf 96.6 0.011 3.9E-07 49.2 9.7 108 16-149 61-169 (248)
143 1nv8_A HEMK protein; class I a 96.6 0.0078 2.7E-07 51.7 8.8 117 18-151 123-250 (284)
144 3pfg_A N-methyltransferase; N, 96.6 0.011 3.9E-07 48.8 9.4 102 17-149 49-150 (263)
145 4gek_A TRNA (CMO5U34)-methyltr 96.6 0.0077 2.6E-07 51.2 8.5 109 17-149 69-177 (261)
146 3q7e_A Protein arginine N-meth 96.6 0.0063 2.2E-07 53.7 8.2 106 17-147 65-170 (349)
147 3d2l_A SAM-dependent methyltra 96.6 0.0097 3.3E-07 48.1 8.7 104 16-150 31-137 (243)
148 2fpo_A Methylase YHHF; structu 96.6 0.0071 2.4E-07 48.8 7.8 110 18-154 54-164 (202)
149 3fpf_A Mtnas, putative unchara 96.5 0.033 1.1E-06 49.0 12.4 108 13-153 117-225 (298)
150 3q87_B N6 adenine specific DNA 96.5 0.016 5.5E-07 45.4 9.5 125 17-175 22-146 (170)
151 1wzn_A SAM-dependent methyltra 96.5 0.0093 3.2E-07 48.9 8.4 106 17-150 40-145 (252)
152 3lst_A CALO1 methyltransferase 96.5 0.019 6.6E-07 50.1 10.9 133 15-177 181-335 (348)
153 1mjf_A Spermidine synthase; sp 96.5 0.0011 3.9E-08 56.8 2.8 108 17-150 74-193 (281)
154 2yvl_A TRMI protein, hypotheti 96.5 0.032 1.1E-06 45.4 11.5 102 16-150 89-190 (248)
155 3bxo_A N,N-dimethyltransferase 96.5 0.041 1.4E-06 44.3 11.7 100 17-150 39-141 (239)
156 2i7c_A Spermidine synthase; tr 96.5 0.0012 3.9E-08 56.9 2.5 110 17-149 77-191 (283)
157 3m70_A Tellurite resistance pr 96.4 0.0072 2.5E-07 50.8 7.3 104 17-149 119-222 (286)
158 2yx1_A Hypothetical protein MJ 96.4 0.0088 3E-07 52.5 8.0 102 17-154 194-295 (336)
159 3jwh_A HEN1; methyltransferase 96.4 0.011 3.7E-07 47.5 7.9 110 17-151 28-142 (217)
160 3tr6_A O-methyltransferase; ce 96.4 0.0029 9.9E-08 51.2 4.5 110 16-149 62-173 (225)
161 2i62_A Nicotinamide N-methyltr 96.4 0.0068 2.3E-07 49.7 6.7 89 78-178 138-239 (265)
162 1wy7_A Hypothetical protein PH 96.4 0.018 6.3E-07 45.7 9.1 127 17-177 48-174 (207)
163 2nyu_A Putative ribosomal RNA 96.4 0.0058 2E-07 48.1 6.0 116 16-153 20-148 (196)
164 3g5t_A Trans-aconitate 3-methy 96.3 0.024 8.4E-07 48.0 10.1 110 17-148 35-147 (299)
165 3dp7_A SAM-dependent methyltra 96.3 0.022 7.6E-07 50.1 10.2 109 17-149 178-286 (363)
166 3duw_A OMT, O-methyltransferas 96.3 0.0066 2.3E-07 49.0 6.2 111 15-149 55-166 (223)
167 3bzb_A Uncharacterized protein 96.3 0.028 9.6E-07 47.8 10.4 137 17-177 78-236 (281)
168 3gu3_A Methyltransferase; alph 96.3 0.045 1.5E-06 46.1 11.3 108 14-150 18-126 (284)
169 3r0q_C Probable protein argini 96.2 0.012 4.1E-07 52.5 8.0 109 14-149 59-168 (376)
170 1g6q_1 HnRNP arginine N-methyl 96.2 0.014 4.7E-07 51.0 8.2 107 16-147 36-142 (328)
171 2plw_A Ribosomal RNA methyltra 96.2 0.036 1.2E-06 43.6 9.8 126 16-166 20-168 (201)
172 2pbf_A Protein-L-isoaspartate 96.2 0.015 5.1E-07 47.0 7.6 111 16-153 78-196 (227)
173 2jjq_A Uncharacterized RNA met 96.1 0.11 3.9E-06 47.3 14.2 130 16-189 288-418 (425)
174 3ntv_A MW1564 protein; rossman 96.1 0.013 4.4E-07 48.2 7.0 106 16-148 69-174 (232)
175 3g07_A 7SK snRNA methylphospha 96.1 0.015 5.1E-07 49.6 7.4 44 94-149 174-219 (292)
176 2avd_A Catechol-O-methyltransf 96.0 0.0057 2E-07 49.5 4.4 109 15-149 66-178 (229)
177 3v97_A Ribosomal RNA large sub 96.0 0.01 3.5E-07 57.7 6.7 145 12-174 533-678 (703)
178 1o9g_A RRNA methyltransferase; 96.0 0.012 4.2E-07 48.6 6.3 48 95-149 166-213 (250)
179 3tm4_A TRNA (guanine N2-)-meth 96.0 0.015 5.3E-07 51.7 7.4 138 16-179 215-353 (373)
180 2xyq_A Putative 2'-O-methyl tr 96.0 0.038 1.3E-06 48.1 9.7 128 15-176 60-195 (290)
181 2aot_A HMT, histamine N-methyl 96.0 0.034 1.2E-06 47.1 9.1 138 17-174 51-217 (292)
182 3c3p_A Methyltransferase; NP_9 95.9 0.022 7.4E-07 45.7 7.4 106 16-149 54-159 (210)
183 1sui_A Caffeoyl-COA O-methyltr 95.9 0.027 9.2E-07 47.1 8.1 108 16-149 77-189 (247)
184 2yxe_A Protein-L-isoaspartate 95.8 0.095 3.3E-06 41.7 10.8 107 15-153 74-180 (215)
185 1zx0_A Guanidinoacetate N-meth 95.8 0.0051 1.8E-07 50.4 3.2 109 17-149 59-169 (236)
186 1dl5_A Protein-L-isoaspartate 95.8 0.057 1.9E-06 46.6 9.8 104 15-150 72-175 (317)
187 2y1w_A Histone-arginine methyl 95.7 0.027 9.3E-07 49.5 7.9 106 17-149 49-154 (348)
188 3r3h_A O-methyltransferase, SA 95.7 0.014 4.8E-07 48.7 5.6 108 16-149 58-169 (242)
189 1r18_A Protein-L-isoaspartate( 95.7 0.048 1.7E-06 44.2 8.6 107 16-152 82-196 (227)
190 3dou_A Ribosomal RNA large sub 95.6 0.015 5.2E-07 46.9 5.4 115 15-154 22-143 (191)
191 2hnk_A SAM-dependent O-methylt 95.6 0.025 8.4E-07 46.4 6.7 110 16-149 58-180 (239)
192 3ccf_A Cyclopropane-fatty-acyl 95.6 0.074 2.5E-06 44.4 9.7 129 15-178 54-210 (279)
193 1pjz_A Thiopurine S-methyltran 95.6 0.033 1.1E-06 44.8 7.2 136 16-179 20-177 (203)
194 2yqz_A Hypothetical protein TT 95.6 0.032 1.1E-06 45.6 7.2 107 15-151 36-142 (263)
195 1ne2_A Hypothetical protein TA 95.5 0.083 2.8E-06 41.8 9.4 118 17-175 50-167 (200)
196 2gs9_A Hypothetical protein TT 95.5 0.044 1.5E-06 43.5 7.6 98 18-151 36-133 (211)
197 3c3y_A Pfomt, O-methyltransfer 95.5 0.015 5.3E-07 48.1 5.0 108 16-149 68-180 (237)
198 3bgv_A MRNA CAP guanine-N7 met 95.4 0.07 2.4E-06 45.5 9.2 116 17-151 33-156 (313)
199 3bt7_A TRNA (uracil-5-)-methyl 95.4 0.015 5.2E-07 51.6 5.0 134 19-189 214-360 (369)
200 3lbf_A Protein-L-isoaspartate 95.3 0.15 5.1E-06 40.4 10.2 103 15-152 74-176 (210)
201 2p35_A Trans-aconitate 2-methy 95.3 0.043 1.5E-06 44.8 7.1 104 15-151 30-133 (259)
202 1fp1_D Isoliquiritigenin 2'-O- 95.2 0.15 5.2E-06 44.7 10.9 99 16-149 207-305 (372)
203 3ege_A Putative methyltransfer 95.1 0.32 1.1E-05 40.1 12.1 127 15-178 31-178 (261)
204 2avn_A Ubiquinone/menaquinone 95.1 0.052 1.8E-06 45.0 7.2 100 18-151 54-153 (260)
205 2cmg_A Spermidine synthase; tr 95.1 0.023 7.9E-07 48.4 4.9 96 17-149 71-170 (262)
206 1jg1_A PIMT;, protein-L-isoasp 95.0 0.086 3E-06 43.0 8.2 105 15-153 88-192 (235)
207 3axs_A Probable N(2),N(2)-dime 95.0 0.018 6.1E-07 52.3 4.3 107 18-152 52-160 (392)
208 3cbg_A O-methyltransferase; cy 94.9 0.022 7.5E-07 46.9 4.2 108 17-149 71-181 (232)
209 2dul_A N(2),N(2)-dimethylguano 94.9 0.023 7.9E-07 51.1 4.6 104 18-151 47-165 (378)
210 4fzv_A Putative methyltransfer 94.9 0.14 4.8E-06 45.9 9.7 136 16-162 146-296 (359)
211 2bm8_A Cephalosporin hydroxyla 94.8 0.2 6.7E-06 41.5 10.0 102 18-149 81-186 (236)
212 3thr_A Glycine N-methyltransfe 94.8 0.018 6.2E-07 48.3 3.4 115 17-151 56-176 (293)
213 4a6d_A Hydroxyindole O-methylt 94.7 0.35 1.2E-05 42.4 11.6 135 15-177 176-333 (353)
214 3iv6_A Putative Zn-dependent a 94.7 0.11 3.8E-06 44.4 8.2 110 15-154 42-152 (261)
215 2ld4_A Anamorsin; methyltransf 94.6 0.089 3E-06 40.7 6.9 113 15-170 9-128 (176)
216 3ggd_A SAM-dependent methyltra 94.6 0.028 9.5E-07 45.8 4.0 109 16-150 54-163 (245)
217 2qfm_A Spermine synthase; sper 94.5 0.022 7.6E-07 51.5 3.5 117 18-152 188-316 (364)
218 3orh_A Guanidinoacetate N-meth 94.5 0.031 1E-06 46.3 4.0 109 17-148 59-168 (236)
219 4e2x_A TCAB9; kijanose, tetron 94.3 0.049 1.7E-06 48.4 5.4 129 16-179 105-254 (416)
220 1p91_A Ribosomal RNA large sub 94.3 0.074 2.5E-06 44.0 6.0 96 17-151 84-179 (269)
221 3m33_A Uncharacterized protein 94.1 0.063 2.2E-06 43.5 5.2 116 17-175 47-164 (226)
222 2g72_A Phenylethanolamine N-me 94.0 0.58 2E-05 39.1 11.2 90 78-179 153-257 (289)
223 3c6k_A Spermine synthase; sper 93.9 0.022 7.6E-07 51.8 2.1 120 18-147 205-328 (381)
224 3reo_A (ISO)eugenol O-methyltr 93.8 0.75 2.6E-05 40.4 12.1 128 16-178 201-355 (368)
225 2a14_A Indolethylamine N-methy 93.8 0.1 3.5E-06 43.5 6.1 87 79-179 138-239 (263)
226 2f8l_A Hypothetical protein LM 93.8 0.38 1.3E-05 41.8 9.9 156 18-186 130-293 (344)
227 3b3j_A Histone-arginine methyl 93.7 0.1 3.5E-06 48.3 6.3 106 17-150 157-263 (480)
228 3kr9_A SAM-dependent methyltra 93.7 0.81 2.8E-05 38.3 11.3 123 18-174 15-139 (225)
229 3lec_A NADB-rossmann superfami 93.6 0.76 2.6E-05 38.6 11.0 125 17-174 20-145 (230)
230 3p9c_A Caffeic acid O-methyltr 93.4 2.1 7.2E-05 37.5 14.1 128 16-178 199-353 (364)
231 3gnl_A Uncharacterized protein 93.3 0.76 2.6E-05 39.0 10.8 124 17-174 20-145 (244)
232 1vbf_A 231AA long hypothetical 93.3 0.25 8.7E-06 39.6 7.5 102 15-153 67-168 (231)
233 1zg3_A Isoflavanone 4'-O-methy 93.3 0.61 2.1E-05 40.5 10.4 127 16-177 191-346 (358)
234 2gb4_A Thiopurine S-methyltran 93.2 0.16 5.4E-06 42.7 6.3 133 17-176 67-225 (252)
235 1u2z_A Histone-lysine N-methyl 92.9 0.32 1.1E-05 44.7 8.3 109 15-149 239-358 (433)
236 4hc4_A Protein arginine N-meth 92.9 0.33 1.1E-05 43.7 8.2 103 18-146 83-185 (376)
237 2zig_A TTHA0409, putative modi 92.8 0.27 9.2E-06 42.1 7.3 102 75-179 20-137 (297)
238 3s1s_A Restriction endonucleas 92.6 0.14 4.8E-06 51.0 5.8 125 17-150 320-465 (878)
239 1fp2_A Isoflavone O-methyltran 92.4 1.9 6.4E-05 37.3 12.2 99 16-149 186-287 (352)
240 2h1r_A Dimethyladenosine trans 92.2 0.39 1.3E-05 41.2 7.5 80 15-109 39-118 (299)
241 2qy6_A UPF0209 protein YFCK; s 91.3 0.54 1.8E-05 39.9 7.3 145 18-191 60-240 (257)
242 1zq9_A Probable dimethyladenos 90.8 0.57 2E-05 39.9 7.0 81 15-109 25-105 (285)
243 3gru_A Dimethyladenosine trans 90.8 1.3 4.5E-05 38.3 9.4 78 15-107 47-124 (295)
244 3gdh_A Trimethylguanosine synt 88.9 0.35 1.2E-05 39.1 4.0 80 18-110 78-157 (241)
245 3ldg_A Putative uncharacterize 88.6 4.9 0.00017 35.9 11.7 55 46-108 257-311 (384)
246 3sso_A Methyltransferase; macr 88.6 1 3.6E-05 41.3 7.3 99 18-149 216-323 (419)
247 4hg2_A Methyltransferase type 88.6 1.2 4.1E-05 37.4 7.2 96 18-149 39-134 (257)
248 3ldu_A Putative methylase; str 88.6 4 0.00014 36.3 11.1 84 46-149 258-343 (385)
249 2p41_A Type II methyltransfera 88.0 0.78 2.7E-05 39.7 5.8 110 15-153 79-194 (305)
250 3cvo_A Methyltransferase-like 87.5 3.6 0.00012 33.8 9.3 99 17-146 29-150 (202)
251 2oxt_A Nucleoside-2'-O-methylt 86.3 2.6 9E-05 35.6 8.1 116 15-158 71-191 (265)
252 3k0b_A Predicted N6-adenine-sp 86.0 7.3 0.00025 34.8 11.2 54 46-107 264-317 (393)
253 2okc_A Type I restriction enzy 85.8 0.71 2.4E-05 41.8 4.5 124 17-152 170-309 (445)
254 3htx_A HEN1; HEN1, small RNA m 85.8 5.6 0.00019 40.0 11.1 109 18-150 721-834 (950)
255 3uwp_A Histone-lysine N-methyl 85.4 3.3 0.00011 38.2 8.7 106 15-149 170-287 (438)
256 3two_A Mannitol dehydrogenase; 84.7 9.4 0.00032 32.7 11.0 116 15-174 173-290 (348)
257 1boo_A Protein (N-4 cytosine-s 84.4 2.4 8.3E-05 36.7 7.1 95 79-178 17-120 (323)
258 3khk_A Type I restriction-modi 84.0 2.8 9.5E-05 39.3 7.8 90 93-185 325-433 (544)
259 3tqs_A Ribosomal RNA small sub 83.6 2.1 7.2E-05 36.1 6.2 80 16-107 27-106 (255)
260 1af7_A Chemotaxis receptor met 83.3 2 6.8E-05 36.7 6.0 46 95-154 211-256 (274)
261 2wa2_A Non-structural protein 83.2 2.5 8.7E-05 35.9 6.6 114 16-157 80-198 (276)
262 1g60_A Adenine-specific methyl 80.6 5.2 0.00018 33.2 7.5 83 94-181 20-102 (260)
263 3opn_A Putative hemolysin; str 78.8 8 0.00027 31.7 8.0 127 17-176 36-182 (232)
264 3llv_A Exopolyphosphatase-rela 78.7 3.6 0.00012 30.3 5.4 73 19-106 6-79 (141)
265 2vdw_A Vaccinia virus capping 76.8 4.1 0.00014 34.8 5.8 109 18-151 48-170 (302)
266 1yub_A Ermam, rRNA methyltrans 74.9 1.9 6.6E-05 35.3 3.1 108 15-149 26-144 (245)
267 2qe6_A Uncharacterized protein 74.8 11 0.00036 31.6 7.8 108 18-152 77-198 (274)
268 3lkd_A Type I restriction-modi 74.4 16 0.00055 34.1 9.6 156 18-185 221-395 (542)
269 3goh_A Alcohol dehydrogenase, 73.7 8 0.00028 32.6 6.9 89 15-149 139-228 (315)
270 3v97_A Ribosomal RNA large sub 73.6 45 0.0015 32.0 12.8 109 47-178 258-366 (703)
271 3fwz_A Inner membrane protein 70.5 5.8 0.0002 29.4 4.7 75 18-107 6-81 (140)
272 2ar0_A M.ecoki, type I restric 70.3 3.2 0.00011 38.8 3.8 86 95-184 259-348 (541)
273 2aef_A Calcium-gated potassium 69.7 6.8 0.00023 31.5 5.3 77 14-106 4-80 (234)
274 3hp7_A Hemolysin, putative; st 68.3 16 0.00055 31.4 7.6 126 18-176 85-230 (291)
275 3ijr_A Oxidoreductase, short c 67.6 18 0.00061 30.2 7.6 123 18-149 46-181 (291)
276 2k4m_A TR8_protein, UPF0146 pr 64.9 9.7 0.00033 30.2 5.0 66 15-107 32-100 (153)
277 3l9w_A Glutathione-regulated p 63.4 4.9 0.00017 36.2 3.4 75 18-107 3-78 (413)
278 1e3i_A Alcohol dehydrogenase, 62.4 24 0.00082 30.4 7.7 100 15-149 192-296 (376)
279 1wma_A Carbonyl reductase [NAD 61.5 6.6 0.00023 31.5 3.6 122 18-149 3-137 (276)
280 3c85_A Putative glutathione-re 60.4 9 0.00031 29.4 4.1 73 19-106 39-114 (183)
281 1eg2_A Modification methylase 60.0 29 0.001 29.9 7.8 97 77-180 40-142 (319)
282 1m6y_A S-adenosyl-methyltransf 59.9 5.3 0.00018 34.5 2.9 83 17-107 25-108 (301)
283 2r6z_A UPF0341 protein in RSP 58.1 4.6 0.00016 33.9 2.1 81 17-109 82-173 (258)
284 2fzw_A Alcohol dehydrogenase c 58.0 28 0.00096 29.9 7.3 100 15-149 187-291 (373)
285 1qam_A ERMC' methyltransferase 57.8 28 0.00095 28.4 6.9 78 16-108 28-105 (244)
286 1id1_A Putative potassium chan 57.7 14 0.00049 27.5 4.8 77 19-106 3-80 (153)
287 3fut_A Dimethyladenosine trans 56.6 31 0.0011 29.1 7.2 78 16-109 45-122 (271)
288 3bed_A PTS system, IIA compone 55.8 20 0.00068 27.2 5.3 57 21-82 7-70 (142)
289 1lnq_A MTHK channels, potassiu 55.8 7.4 0.00025 33.2 3.1 72 18-105 114-185 (336)
290 3vyw_A MNMC2; tRNA wobble urid 55.8 4.1 0.00014 35.7 1.5 137 20-191 98-253 (308)
291 3is3_A 17BETA-hydroxysteroid d 55.3 34 0.0012 27.8 7.1 123 18-149 17-151 (270)
292 3o38_A Short chain dehydrogena 55.1 8.8 0.0003 31.2 3.4 80 18-105 21-109 (266)
293 3r3s_A Oxidoreductase; structu 55.1 65 0.0022 26.6 8.9 124 18-149 48-184 (294)
294 3ksu_A 3-oxoacyl-acyl carrier 54.6 38 0.0013 27.6 7.2 124 18-149 10-146 (262)
295 4e3z_A Putative oxidoreductase 54.5 8.1 0.00028 31.7 3.0 95 2-105 9-112 (272)
296 4dvj_A Putative zinc-dependent 52.4 11 0.00039 32.5 3.8 96 18-149 171-269 (363)
297 3tka_A Ribosomal RNA small sub 52.2 6.2 0.00021 35.3 2.1 29 121-149 243-274 (347)
298 3ius_A Uncharacterized conserv 51.2 56 0.0019 26.2 7.7 68 20-108 6-74 (286)
299 4gx0_A TRKA domain protein; me 50.9 11 0.00038 34.6 3.7 74 15-103 123-198 (565)
300 3v2g_A 3-oxoacyl-[acyl-carrier 50.6 57 0.0019 26.7 7.8 123 18-149 30-164 (271)
301 4fs3_A Enoyl-[acyl-carrier-pro 50.1 43 0.0015 27.2 6.9 78 18-106 5-95 (256)
302 1wg8_A Predicted S-adenosylmet 49.9 6.8 0.00023 34.1 1.9 28 122-149 203-233 (285)
303 4ggo_A Trans-2-enoyl-COA reduc 48.7 14 0.00049 33.5 3.9 90 16-105 47-148 (401)
304 3uzu_A Ribosomal RNA small sub 48.4 50 0.0017 27.8 7.2 82 16-107 40-124 (279)
305 1g0o_A Trihydroxynaphthalene r 47.6 58 0.002 26.6 7.3 79 18-105 28-115 (283)
306 3ip1_A Alcohol dehydrogenase, 47.5 16 0.00054 32.1 4.0 76 15-103 210-288 (404)
307 3rkr_A Short chain oxidoreduct 47.3 50 0.0017 26.6 6.8 78 18-105 28-114 (262)
308 4erc_A Dual specificity protei 46.7 64 0.0022 23.4 6.8 75 65-154 25-99 (150)
309 4fn4_A Short chain dehydrogena 45.9 60 0.002 27.0 7.2 79 18-105 6-92 (254)
310 3jyn_A Quinone oxidoreductase; 45.6 40 0.0014 28.3 6.2 121 15-172 137-261 (325)
311 3oig_A Enoyl-[acyl-carrier-pro 45.3 50 0.0017 26.5 6.5 123 18-149 6-147 (266)
312 3o26_A Salutaridine reductase; 45.1 13 0.00043 30.5 2.8 78 18-105 11-99 (311)
313 1piw_A Hypothetical zinc-type 43.9 30 0.001 29.6 5.2 76 15-107 176-253 (360)
314 1mio_B Nitrogenase molybdenum 43.8 17 0.00059 32.9 3.7 63 16-88 309-378 (458)
315 3fpc_A NADP-dependent alcohol 42.1 31 0.001 29.4 4.9 100 15-149 163-265 (352)
316 3edm_A Short chain dehydrogena 42.1 49 0.0017 26.8 5.9 124 18-149 7-142 (259)
317 2oyr_A UPF0341 protein YHIQ; a 41.9 39 0.0013 28.4 5.4 76 20-109 90-176 (258)
318 3ll7_A Putative methyltransfer 41.9 17 0.00057 33.0 3.3 82 18-110 93-176 (410)
319 3ftd_A Dimethyladenosine trans 41.2 46 0.0016 27.4 5.7 79 15-108 28-106 (249)
320 2jhf_A Alcohol dehydrogenase E 40.2 1E+02 0.0035 26.3 8.0 100 15-149 188-292 (374)
321 3ipr_A PTS system, IIA compone 39.8 46 0.0016 25.5 5.1 57 21-82 3-67 (150)
322 3lfh_A Manxa, phosphotransfera 39.8 72 0.0025 24.3 6.2 56 21-81 5-69 (144)
323 1m6y_A S-adenosyl-methyltransf 39.6 13 0.00044 32.0 2.1 28 122-149 215-245 (301)
324 3grk_A Enoyl-(acyl-carrier-pro 39.3 70 0.0024 26.5 6.6 123 18-149 30-169 (293)
325 3lk7_A UDP-N-acetylmuramoylala 38.7 36 0.0012 30.5 5.0 71 18-104 8-79 (451)
326 2d8a_A PH0655, probable L-thre 38.5 47 0.0016 28.2 5.5 96 18-148 167-265 (348)
327 2c07_A 3-oxoacyl-(acyl-carrier 38.3 28 0.00096 28.6 3.9 77 19-105 44-129 (285)
328 3k31_A Enoyl-(acyl-carrier-pro 38.3 70 0.0024 26.5 6.5 122 18-148 29-166 (296)
329 3eag_A UDP-N-acetylmuramate:L- 38.2 52 0.0018 28.0 5.8 68 19-104 4-73 (326)
330 1zsy_A Mitochondrial 2-enoyl t 38.0 67 0.0023 27.3 6.4 100 15-149 164-269 (357)
331 1pdo_A Mannose permease; phosp 37.9 26 0.0009 26.2 3.4 57 21-82 3-67 (135)
332 3evf_A RNA-directed RNA polyme 37.6 91 0.0031 26.8 7.1 48 93-152 136-186 (277)
333 1uuf_A YAHK, zinc-type alcohol 35.7 46 0.0016 28.7 5.1 37 15-53 191-228 (369)
334 3sx6_A Sulfide-quinone reducta 35.1 18 0.0006 31.9 2.3 92 19-110 149-270 (437)
335 3abi_A Putative uncharacterize 35.0 1.1E+02 0.0037 26.3 7.3 117 19-176 16-132 (365)
336 3e9n_A Putative short-chain de 35.0 87 0.003 24.8 6.3 74 19-105 5-83 (245)
337 3uko_A Alcohol dehydrogenase c 34.8 50 0.0017 28.4 5.1 100 15-149 190-294 (378)
338 3qiv_A Short-chain dehydrogena 34.3 23 0.00078 28.3 2.7 78 18-105 8-94 (253)
339 3tqh_A Quinone oxidoreductase; 33.5 60 0.0021 27.1 5.3 93 15-149 149-244 (321)
340 1p0f_A NADP-dependent alcohol 33.4 95 0.0032 26.5 6.7 100 15-149 188-292 (373)
341 3slk_A Polyketide synthase ext 33.4 1.1E+02 0.0037 29.7 7.7 83 15-104 526-618 (795)
342 3ek2_A Enoyl-(acyl-carrier-pro 33.3 21 0.00074 28.6 2.4 82 13-105 8-100 (271)
343 1kol_A Formaldehyde dehydrogen 32.9 94 0.0032 26.8 6.6 51 15-78 182-233 (398)
344 1ja9_A 4HNR, 1,3,6,8-tetrahydr 32.8 51 0.0018 26.3 4.6 81 18-106 20-108 (274)
345 2yvq_A Carbamoyl-phosphate syn 32.8 40 0.0014 25.6 3.7 14 93-107 92-105 (143)
346 3soz_A ORF 245 protein, cytopl 32.8 13 0.00043 31.5 0.8 73 17-104 1-77 (248)
347 3h28_A Sulfide-quinone reducta 32.7 36 0.0012 29.8 3.9 90 20-109 143-256 (430)
348 3e8x_A Putative NAD-dependent 32.7 1.5E+02 0.005 23.1 7.3 134 18-177 20-170 (236)
349 3gpi_A NAD-dependent epimerase 32.2 70 0.0024 25.8 5.4 68 19-105 3-71 (286)
350 2dph_A Formaldehyde dismutase; 32.0 96 0.0033 26.8 6.6 50 15-77 182-232 (398)
351 2hmt_A YUAA protein; RCK, KTN, 31.9 69 0.0024 22.5 4.8 74 19-107 6-80 (144)
352 4gqb_A Protein arginine N-meth 31.7 1.3E+02 0.0044 28.8 7.8 101 19-145 358-462 (637)
353 3v8b_A Putative dehydrogenase, 31.2 1.9E+02 0.0066 23.5 8.1 78 19-106 28-114 (283)
354 2bgk_A Rhizome secoisolaricire 31.0 24 0.00082 28.4 2.3 78 18-105 15-100 (278)
355 4hv4_A UDP-N-acetylmuramate--L 31.0 83 0.0028 28.5 6.1 68 16-104 19-88 (494)
356 3h7a_A Short chain dehydrogena 31.0 35 0.0012 27.6 3.3 79 18-105 6-91 (252)
357 4g65_A TRK system potassium up 30.9 89 0.0031 28.2 6.3 57 17-87 1-58 (461)
358 3mtq_A Putative phosphoenolpyr 30.8 36 0.0012 26.7 3.2 34 16-51 17-55 (159)
359 4ibo_A Gluconate dehydrogenase 30.8 20 0.00068 29.6 1.8 78 18-105 25-111 (271)
360 3d7l_A LIN1944 protein; APC893 30.5 21 0.00072 27.3 1.8 32 20-53 4-36 (202)
361 2pju_A Propionate catabolism o 30.5 1.2E+02 0.004 24.9 6.5 53 20-81 107-160 (225)
362 1qgu_B Protein (nitrogenase mo 30.1 33 0.0011 31.8 3.3 67 15-89 356-428 (519)
363 3aek_A Light-independent proto 29.9 17 0.00058 32.8 1.2 20 16-35 304-323 (437)
364 3tjr_A Short chain dehydrogena 29.8 29 0.00099 29.0 2.6 79 18-105 30-116 (301)
365 4da9_A Short-chain dehydrogena 29.5 97 0.0033 25.3 5.9 80 17-105 27-115 (280)
366 1xa0_A Putative NADPH dependen 28.6 86 0.0029 26.1 5.5 94 17-149 147-245 (328)
367 2pjd_A Ribosomal RNA small sub 28.4 78 0.0027 26.9 5.2 92 19-149 20-111 (343)
368 3l4b_C TRKA K+ channel protien 28.4 40 0.0014 26.5 3.1 31 20-52 1-32 (218)
369 2wk1_A NOVP; transferase, O-me 28.1 1.2E+02 0.0041 25.7 6.3 63 64-148 177-242 (282)
370 1vj0_A Alcohol dehydrogenase, 28.1 58 0.002 28.1 4.4 97 16-149 193-297 (380)
371 3ucx_A Short chain dehydrogena 28.1 1.5E+02 0.005 23.8 6.7 80 17-105 9-96 (264)
372 3ua3_A Protein arginine N-meth 27.7 1E+02 0.0035 30.2 6.3 106 19-145 410-529 (745)
373 1tt7_A YHFP; alcohol dehydroge 27.4 1.1E+02 0.0038 25.5 5.9 95 17-148 148-245 (330)
374 4eue_A Putative reductase CA_C 27.3 57 0.002 29.3 4.3 89 15-104 56-158 (418)
375 1gee_A Glucose 1-dehydrogenase 27.1 39 0.0013 26.9 2.9 78 19-105 7-93 (261)
376 4ej6_A Putative zinc-binding d 27.1 72 0.0025 27.4 4.8 100 15-149 179-283 (370)
377 3l77_A Short-chain alcohol deh 27.1 69 0.0024 25.1 4.4 78 19-105 2-88 (235)
378 3h8l_A NADH oxidase; membrane 27.0 1E+02 0.0035 26.4 5.8 43 67-109 224-270 (409)
379 3lyl_A 3-oxoacyl-(acyl-carrier 26.9 51 0.0018 26.1 3.6 78 18-105 4-90 (247)
380 1yb1_A 17-beta-hydroxysteroid 26.9 35 0.0012 27.8 2.6 79 18-105 30-116 (272)
381 3ppi_A 3-hydroxyacyl-COA dehyd 26.7 1.8E+02 0.0062 23.3 7.0 77 18-106 29-112 (281)
382 3ruf_A WBGU; rossmann fold, UD 26.6 74 0.0025 26.4 4.7 77 18-105 24-108 (351)
383 1xg5_A ARPG836; short chain de 26.6 42 0.0014 27.3 3.1 78 18-105 31-119 (279)
384 2bc0_A NADH oxidase; flavoprot 26.5 1.2E+02 0.004 27.0 6.2 84 17-105 192-287 (490)
385 1zk4_A R-specific alcohol dehy 26.4 22 0.00075 28.2 1.2 78 18-105 5-90 (251)
386 4gi5_A Quinone reductase; prot 26.4 1.7E+02 0.0058 24.7 6.9 14 97-110 112-125 (280)
387 3lzw_A Ferredoxin--NADP reduct 26.2 1E+02 0.0035 24.9 5.4 79 19-105 154-246 (332)
388 2q5c_A NTRC family transcripti 26.2 99 0.0034 24.5 5.1 53 20-81 95-148 (196)
389 3r1i_A Short-chain type dehydr 26.2 36 0.0012 28.1 2.5 78 18-105 31-117 (276)
390 1cdo_A Alcohol dehydrogenase; 26.1 1.6E+02 0.0054 25.0 6.8 100 15-149 189-293 (374)
391 2b5w_A Glucose dehydrogenase; 26.1 1.1E+02 0.0036 26.0 5.7 96 20-149 174-272 (357)
392 2px2_A Genome polyprotein [con 26.0 1.6E+02 0.0055 25.2 6.6 56 81-153 129-186 (269)
393 4iin_A 3-ketoacyl-acyl carrier 26.0 50 0.0017 26.8 3.4 79 18-105 28-115 (271)
394 3gms_A Putative NADPH:quinone 25.8 45 0.0015 28.2 3.2 75 15-103 141-219 (340)
395 4eez_A Alcohol dehydrogenase 1 25.7 1.5E+02 0.0053 24.6 6.6 77 15-104 160-239 (348)
396 2h7i_A Enoyl-[acyl-carrier-pro 25.6 60 0.002 26.3 3.8 36 18-55 6-45 (269)
397 3mje_A AMPHB; rossmann fold, o 25.6 2.1E+02 0.0071 26.1 7.8 84 15-105 233-327 (496)
398 3ioy_A Short-chain dehydrogena 25.5 30 0.001 29.2 2.0 79 18-105 7-95 (319)
399 3qlj_A Short chain dehydrogena 25.3 34 0.0012 28.7 2.3 87 17-105 25-122 (322)
400 2vdc_G Glutamate synthase [NAD 25.3 1.6E+02 0.0056 26.2 7.0 67 17-88 262-329 (456)
401 2yut_A Putative short-chain ox 25.2 27 0.00093 26.7 1.5 73 20-106 1-75 (207)
402 3r24_A NSP16, 2'-O-methyl tran 24.9 71 0.0024 28.4 4.2 67 78-155 155-222 (344)
403 2xdq_B Light-independent proto 24.4 32 0.0011 31.6 2.0 36 15-52 299-336 (511)
404 4g81_D Putative hexonate dehyd 24.2 2.6E+02 0.0087 23.0 7.6 79 18-105 8-94 (255)
405 3i1j_A Oxidoreductase, short c 24.2 1.9E+02 0.0067 22.5 6.6 81 18-108 13-105 (247)
406 2cdc_A Glucose dehydrogenase g 24.2 1.3E+02 0.0045 25.5 5.9 93 19-149 181-277 (366)
407 1xu9_A Corticosteroid 11-beta- 24.1 1.2E+02 0.0042 24.5 5.5 77 18-104 27-113 (286)
408 1yxm_A Pecra, peroxisomal tran 24.1 43 0.0015 27.4 2.7 78 18-105 17-108 (303)
409 3pk0_A Short-chain dehydrogena 24.1 29 0.001 28.2 1.6 78 18-105 9-96 (262)
410 4ina_A Saccharopine dehydrogen 23.9 1.8E+02 0.0062 25.4 6.9 77 20-106 2-85 (405)
411 3f1l_A Uncharacterized oxidore 23.7 2E+02 0.0067 22.8 6.6 78 18-105 11-100 (252)
412 1iz0_A Quinone oxidoreductase; 23.7 56 0.0019 27.0 3.3 36 16-53 123-160 (302)
413 1pl8_A Human sorbitol dehydrog 23.5 1.6E+02 0.0054 24.9 6.3 100 15-149 168-272 (356)
414 3fbg_A Putative arginate lyase 23.4 61 0.0021 27.5 3.6 94 18-148 150-246 (346)
415 1umd_A E1-alpha, 2-OXO acid de 23.2 80 0.0027 27.6 4.4 34 18-53 166-204 (367)
416 2z5l_A Tylkr1, tylactone synth 22.8 2.7E+02 0.0093 25.3 8.1 84 15-105 255-343 (511)
417 3gqv_A Enoyl reductase; medium 22.6 2.4E+02 0.0084 23.9 7.4 32 17-50 163-196 (371)
418 2b4q_A Rhamnolipids biosynthes 22.5 56 0.0019 26.8 3.1 78 18-105 28-113 (276)
419 3awd_A GOX2181, putative polyo 22.2 67 0.0023 25.4 3.4 79 18-105 12-98 (260)
420 2a4k_A 3-oxoacyl-[acyl carrier 22.1 1.5E+02 0.0052 23.9 5.7 76 18-105 5-88 (263)
421 3hn7_A UDP-N-acetylmuramate-L- 22.1 1.2E+02 0.0042 27.6 5.6 71 15-104 15-87 (524)
422 3ufb_A Type I restriction-modi 22.1 15 0.00053 34.0 -0.6 15 95-109 300-314 (530)
423 1e3j_A NADP(H)-dependent ketos 21.9 1.7E+02 0.0059 24.5 6.2 99 15-149 165-270 (352)
424 3e03_A Short chain dehydrogena 21.9 42 0.0014 27.4 2.1 83 18-105 5-98 (274)
425 2o1s_A 1-deoxy-D-xylulose-5-ph 21.8 1.9E+02 0.0065 27.0 6.9 34 18-53 143-181 (621)
426 3ic5_A Putative saccharopine d 21.8 1.4E+02 0.0049 20.0 4.8 73 19-107 5-79 (118)
427 3nrc_A Enoyl-[acyl-carrier-pro 21.7 54 0.0019 26.8 2.8 75 18-105 25-111 (280)
428 3fbs_A Oxidoreductase; structu 21.6 2.1E+02 0.0073 22.4 6.4 80 18-107 140-224 (297)
429 1f8f_A Benzyl alcohol dehydrog 21.6 1.3E+02 0.0045 25.5 5.4 100 15-149 187-288 (371)
430 3qwb_A Probable quinone oxidor 21.2 73 0.0025 26.7 3.6 98 15-149 145-246 (334)
431 3sc4_A Short chain dehydrogena 21.2 2.5E+02 0.0086 22.7 6.9 83 18-105 8-101 (285)
432 2fr1_A Erythromycin synthase, 21.1 2.5E+02 0.0086 25.2 7.4 84 15-105 222-314 (486)
433 2o23_A HADH2 protein; HSD17B10 21.1 83 0.0028 24.9 3.8 76 18-105 11-94 (265)
434 3mos_A Transketolase, TK; thia 21.0 1.4E+02 0.0048 28.1 5.8 32 18-50 144-180 (616)
435 1h2b_A Alcohol dehydrogenase; 20.9 1.9E+02 0.0065 24.4 6.3 53 15-81 183-237 (359)
436 3h2s_A Putative NADH-flavin re 20.8 1.5E+02 0.0052 22.5 5.2 71 20-108 1-73 (224)
437 3qp9_A Type I polyketide synth 20.7 1.5E+02 0.0051 27.1 5.8 90 14-105 246-350 (525)
438 3uf0_A Short-chain dehydrogena 20.5 81 0.0028 25.8 3.6 77 18-105 30-114 (273)
No 1
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.41 E-value=1.7e-06 Score=73.00 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=97.3
Q ss_pred CCC-CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYT-NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~-~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+.+ ...+||-+|=|.=.+++.|++... . ..++.|..++..+ .+.+|++.+.-.+-..++..|+.++.. .+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~--~--~v~gvDi~~~~~~---~a~~n~~~~~~~~~v~~~~~D~~~~~~--~~ 115 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTK--A--KIVGVEIQERLAD---MAKRSVAYNQLEDQIEIIEYDLKKITD--LI 115 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCC--C--EEEEECCSHHHHH---HHHHHHHHTTCTTTEEEECSCGGGGGG--TS
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcC--C--cEEEEECCHHHHH---HHHHHHHHCCCcccEEEEECcHHHhhh--hh
Confidence 445 788999999877778877887642 2 4556665555442 477777765433335667778888753 24
Q ss_pred CCCcccEEEEcCCCCCC-CCCCCccc--HHH-HHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 94 SQMKFDVIIFNFPHAGH-SPPLSEQD--TNL-IKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~-~~~~~~~~--~~~-i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
...+||.||.|.|.... ..+....+ +.. .......+..|++.+..+|+++|.+.+.+ .|...-.+..++...|
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---RPERLLDIIDIMRKYR 192 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---CTTTHHHHHHHHHHTT
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---cHHHHHHHHHHHHHCC
Confidence 46789999999997543 11111111 010 01123557899999999999999998863 2345566778888899
Q ss_pred CEEEEEecCC
Q 041136 170 LVLKEKVEFL 179 (214)
Q Consensus 170 l~l~~~~~F~ 179 (214)
+.+.+..+..
T Consensus 193 ~~~~~~~~v~ 202 (259)
T 3lpm_A 193 LEPKRIQFVH 202 (259)
T ss_dssp EEEEEEEEEE
T ss_pred CceEEEEEee
Confidence 9888765543
No 2
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=98.22 E-value=1.1e-05 Score=66.06 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+++.+||-+|=| .=.++..|++.. +..+++ .|..++..+ .+.+|++.+.. .+.+ ..-|++.+.. +.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~--vD~s~~~~~---~a~~~~~~~~~-~v~~-~~~d~~~~~~---~~ 120 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTA--TEVDEEFFE---YARRNIERNNS-NVRL-VKSNGGIIKG---VV 120 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEE--EECCHHHHH---HHHHHHHHTTC-CCEE-EECSSCSSTT---TC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEE--EECCHHHHH---HHHHHHHHhCC-CcEE-EeCCchhhhh---cc
Confidence 4578999999988 777777788876 235554 554343331 46667665543 4444 3456655543 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHH---HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLI---KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i---~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
..+||.|+.|.|...............+ ....+++..|++.+..+|++||.+.+.+..+. ...-.+.++..+.|+.
T Consensus 121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~ 199 (230)
T 3evz_A 121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYS 199 (230)
T ss_dssp CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCE
T ss_pred cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCc
Confidence 4789999999997653211000000000 01234568999999999999999988744322 2334567788889997
Q ss_pred EEEE
Q 041136 172 LKEK 175 (214)
Q Consensus 172 l~~~ 175 (214)
+...
T Consensus 200 ~~~~ 203 (230)
T 3evz_A 200 VKDI 203 (230)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
No 3
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=98.20 E-value=3e-05 Score=61.83 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=97.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++.+||-+|=|.=.++..|++.+++... .++.|..++..+ .+.+|++.+.-.....+...|+.++.. +..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~--v~~vD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR--VFGFDIQDKAIA---NTTKKLTDLNLIDRVTLIKDGHQNMDK---YID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE--EEEECSCHHHHH---HHHHHHHHTTCGGGEEEECSCGGGGGG---TCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE--EEEEECCHHHHH---HHHHHHHHcCCCCCeEEEECCHHHHhh---hcc
Confidence 456789999997766777779998864444 455675444442 466666554221235567778887754 233
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc---HhhHH---HhcC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN---VMGLA---DKLG 169 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~---i~~lA---~~~g 169 (214)
.+||.|++|+|......... ..+.+....+++.+..+|+++|.+.+....+.+..... +.... ...+
T Consensus 92 ~~fD~v~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (197)
T 3eey_A 92 CPVKAVMFNLGYLPSGDHSI-------STRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKK 164 (197)
T ss_dssp SCEEEEEEEESBCTTSCTTC-------BCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTT
T ss_pred CCceEEEEcCCcccCccccc-------ccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCc
Confidence 78999999997743211100 11233445589999999999999988876554432222 22222 2346
Q ss_pred CEEEEEecCCCCCCCCCc
Q 041136 170 LVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 170 l~l~~~~~F~~~~yPgY~ 187 (214)
+.+.....+....-|+|-
T Consensus 165 ~~v~~~~~~~~~~~pp~~ 182 (197)
T 3eey_A 165 FIVQRTDFINQANCPPIL 182 (197)
T ss_dssp EEEEEEEETTCCSCCCEE
T ss_pred EEEEEEEeccCccCCCeE
Confidence 777776666665666654
No 4
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.16 E-value=2.1e-05 Score=68.89 Aligned_cols=151 Identities=16% Similarity=0.189 Sum_probs=97.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-..+.+||-+|=|.=.++..|++.++....|+ +.|..+...+ .+.+|++.+.-.+ ..+..-|++++..
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~--avD~s~~~l~---~a~~~~~~~g~~~-v~~~~~D~~~~~~---- 183 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIY--AFDVDENRLR---ETRLNLSRLGVLN-VILFHSSSLHIGE---- 183 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEE--EECSCHHHHH---HHHHHHHHHTCCS-EEEESSCGGGGGG----
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEE--EEcCCHHHHH---HHHHHHHHhCCCe-EEEEECChhhccc----
Confidence 3456788999998655556666888875434555 4564333331 4667777664333 3455668887653
Q ss_pred CCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~ 166 (214)
....||+|+.|.|+.|.+.-... .+...+.....+-..++..+..+|++||.+.++-|.-.|- +.-.|..+.+
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~ 263 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHh
Confidence 23579999999998775321111 1112233445667899999999999999998887765553 4455666777
Q ss_pred hcCCEEEE
Q 041136 167 KLGLVLKE 174 (214)
Q Consensus 167 ~~gl~l~~ 174 (214)
+.|+.+..
T Consensus 264 ~~~~~~~~ 271 (315)
T 1ixk_A 264 NFDVELLP 271 (315)
T ss_dssp HSSEEEEC
T ss_pred cCCCEEec
Confidence 78877654
No 5
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.07 E-value=2.7e-05 Score=63.43 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-||=|.=.++..||+... ..++ ++.|..++..+ .+.+|++.+.-.++ .++..|+..+... +....
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v--~gvD~s~~~l~---~a~~~~~~~~~~~v-~~~~~d~~~~~~~--~~~~~ 111 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNP-DINY--IGIDIQKSVLS---YALDKVLEVGVPNI-KLLWVDGSDLTDY--FEDGE 111 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-TSEE--EEEESCHHHHH---HHHHHHHHHCCSSE-EEEECCSSCGGGT--SCTTC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCC-CCCE--EEEEcCHHHHH---HHHHHHHHcCCCCE-EEEeCCHHHHHhh--cCCCC
Confidence 478899999776667777888863 3344 55564343332 46667665532233 4455688776432 44567
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
||.|+.|||..-.+ .+. ...+.....|+..+..+|++||.+++.. +..++- ..+.++.+.+|+.+....
T Consensus 112 ~D~i~~~~~~~~~~----~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 112 IDRLYLNFSDPWPK----KRH----EKRRLTYKTFLDTFKRILPENGEIHFKT-DNRGLF-EYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CSEEEEESCCCCCS----GGG----GGGSTTSHHHHHHHHHHSCTTCEEEEEE-SCHHHH-HHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEECCCCccc----cch----hhhccCCHHHHHHHHHHcCCCcEEEEEe-CCHHHH-HHHHHHHHHCCCeeeecc
Confidence 99999999954321 111 1112346788999999999999998862 222222 234556667799887754
No 6
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.99 E-value=4.1e-05 Score=60.46 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++.+||-+|=|.=.++..|++. +..| |+.|..++..+ .+.+|++.+.-.++.++. -|+..+... ..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v--~~vD~s~~~l~---~a~~~~~~~~~~~v~~~~-~~~~~l~~~---~~ 87 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKV--YAFDVQEQALG---KTSQRLSDLGIENTELIL-DGHENLDHY---VR 87 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEE--EEEESCHHHHH---HHHHHHHHHTCCCEEEEE-SCGGGGGGT---CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEE--EEEECCHHHHH---HHHHHHHHcCCCcEEEEe-CcHHHHHhh---cc
Confidence 457889999996655566667776 2344 55674444442 467777765433455555 667766543 25
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||.|++|+|+.-... . .+.........+++.+..+|+|||.+.++...+.|
T Consensus 88 ~~fD~v~~~~~~~~~~~----~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 140 (185)
T 3mti_A 88 EPIRAAIFNLGYLPSAD----K---SVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD 140 (185)
T ss_dssp SCEEEEEEEEC------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred CCcCEEEEeCCCCCCcc----h---hcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence 68999999987654211 0 01223445567788999999999999998876654
No 7
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.98 E-value=3.4e-05 Score=60.34 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=87.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++. + .++++ .|..++..+ .+.+++ .++.+ ...|+.++. +...
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~--~D~~~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~~~~ 106 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ-G--HDVLG--TDLDPILID---YAKQDF-----PEARW-VVGDLSVDQ----ISET 106 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT-T--CEEEE--EESCHHHHH---HHHHHC-----TTSEE-EECCTTTSC----CCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC-C--CcEEE--EcCCHHHHH---HHHHhC-----CCCcE-EEcccccCC----CCCC
Confidence 57889999997777777778876 2 35554 454333321 233322 13443 445776653 3456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
.||.|+.++|-.... ...-+..++..+..+|+++|.+.++......++...+..+.+++|+.+.+..
T Consensus 107 ~~D~i~~~~~~~~~~-------------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 107 DFDLIVSAGNVMGFL-------------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp CEEEEEECCCCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred ceeEEEECCcHHhhc-------------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence 899999985533211 1233577888899999999999998777666777888899999999988753
No 8
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.96 E-value=2.1e-05 Score=73.18 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=105.2
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++.+||=+|=|-=..|..||...+....|+| .|..+... ..+.+|++.+.-.+ ..+..-
T Consensus 90 Qd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~A--vDis~~rl---~~~~~n~~r~g~~n-v~v~~~ 163 (456)
T 3m4x_A 90 QEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVT--NEIFPKRA---KILSENIERWGVSN-AIVTNH 163 (456)
T ss_dssp CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEE--ECSSHHHH---HHHHHHHHHHTCSS-EEEECC
T ss_pred ECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEE--EeCCHHHH---HHHHHHHHHcCCCc-eEEEeC
Confidence 4444444334444567899999986555566668888764445665 45333322 14677887764333 455667
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|+.++... ....||+|+.|-|+.|.+.-..+.+ ...+.....+...++..|..+|++||.+..+-|.-.|-
T Consensus 164 Da~~l~~~---~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 240 (456)
T 3m4x_A 164 APAELVPH---FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE 240 (456)
T ss_dssp CHHHHHHH---HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG
T ss_pred CHHHhhhh---ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc
Confidence 88876431 2467999999999988642111111 01233345667789999999999999998888876663
Q ss_pred -CcccHhhHHHhcCCEEEE
Q 041136 157 -NQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~ 174 (214)
+.-+|..+.+++++.+..
T Consensus 241 Ene~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 241 ENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp GTHHHHHHHHHHSSEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEe
Confidence 556677777888866654
No 9
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.92 E-value=4.9e-05 Score=69.78 Aligned_cols=153 Identities=9% Similarity=0.065 Sum_probs=94.0
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-.++.+||-+|=|.=.++..|++.++....|+| .|..+... ..+.+|++.+.-.+ ..+...|++++... +
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a--~D~s~~~l---~~~~~~~~~~g~~~-v~~~~~D~~~~~~~--~ 326 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYA--FDVDKMRM---KRLKDFVKRMGIKI-VKPLVKDARKAPEI--I 326 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHH---HHHHHHHHHTTCCS-EEEECSCTTCCSSS--S
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEE--EcCCHHHH---HHHHHHHHHcCCCc-EEEEEcChhhcchh--h
Confidence 34567889999986555556668888753245555 55433332 13566666553223 34556688876532 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc-cHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW-NVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W-~i~~lA~ 166 (214)
....||+|+.|.|+.|.+.-....+ ...+.....+-..++..+..+|++||.+.++-|.-.|...- .|..+.+
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~ 406 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLN 406 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 4467999999999987632100000 01122334455788999999999999998887776654333 4555444
Q ss_pred h-cCCEEEE
Q 041136 167 K-LGLVLKE 174 (214)
Q Consensus 167 ~-~gl~l~~ 174 (214)
+ .++.+..
T Consensus 407 ~~~~~~~~~ 415 (450)
T 2yxl_A 407 VHPEFKLVP 415 (450)
T ss_dssp HCSSCEECC
T ss_pred hCCCCEEee
Confidence 4 4787754
No 10
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=97.91 E-value=0.00014 Score=64.89 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~~~ 96 (214)
.+.+||-|| |.=.++..|++.. . +..+|++|..++..+ .+.+|++.+.-.++. ++.-|+.+ |.. ....
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~-~--~~~v~~vDi~~~~l~---~a~~~~~~~g~~~v~-~~~~D~~~~l~~---~~~~ 240 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSG-L--PKRIAVLDIDERLTK---FIEKAANEIGYEDIE-IFTFDLRKPLPD---YALH 240 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHT-C--CSEEEEECSCHHHHH---HHHHHHHHHTCCCEE-EECCCTTSCCCT---TTSS
T ss_pred CCCEEEEEC-CCCHHHHHHHHhC-C--CCEEEEEECCHHHHH---HHHHHHHHcCCCCEE-EEEChhhhhchh---hccC
Confidence 578999999 9888888887753 2 235667785444432 477787765322344 44558877 532 1235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecC--CCCCCc-ccHhhHHH-hcCCE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRD--DHPYNQ-WNVMGLAD-KLGLV 171 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~--~~Py~~-W~i~~lA~-~~gl~ 171 (214)
.||.||.|.|... . . +..|+..|..+|++||.+ .++... +.| .. +.+..+.. +.|+.
T Consensus 241 ~fD~Vi~~~p~~~-------------~---~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~ 302 (373)
T 2qm3_A 241 KFDTFITDPPETL-------------E---A-IRAFVGRGIATLKGPRCAGYFGITRRESSL-DKWREIQKLLLNEFNVV 302 (373)
T ss_dssp CBSEEEECCCSSH-------------H---H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCH-HHHHHHHHHHHHTSCCE
T ss_pred CccEEEECCCCch-------------H---H-HHHHHHHHHHHcccCCeEEEEEEecCcCCH-HHHHHHHHHHHHhcCcc
Confidence 7999999998532 1 1 388899999999999954 555444 332 22 45666666 78887
Q ss_pred EEEEe
Q 041136 172 LKEKV 176 (214)
Q Consensus 172 l~~~~ 176 (214)
+....
T Consensus 303 ~~~~~ 307 (373)
T 2qm3_A 303 ITDII 307 (373)
T ss_dssp EEEEE
T ss_pred hhhhh
Confidence 75543
No 11
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=97.88 E-value=0.00019 Score=57.86 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=94.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++..++.. ..|+.|..++..+ .+.+++....-.+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~ 103 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVN---YAWEKVNKLGLKN-VEVLKSEENKIP----LP 103 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHH---HHHHHHHHHTCTT-EEEEECBTTBCS----SC
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHH---HHHHHHHHcCCCc-EEEEecccccCC----CC
Confidence 456788999999777777777998875433 4555664444332 3555555443223 445566777654 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------CCCcccHhhH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------PYNQWNVMGL 164 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------Py~~W~i~~l 164 (214)
..+||.|+.+..-.... -...+++.+..+|++||.+.++-.... .++...+..+
T Consensus 104 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELS----------------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLI 167 (219)
T ss_dssp SSCEEEEEEESCGGGCS----------------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHH
T ss_pred CCCeeEEEeehhhhhcC----------------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHH
Confidence 67899999986543221 024677888899999999977643211 1456778899
Q ss_pred HHhcCCEEEEEecCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~ 181 (214)
.+++||...+...+...
T Consensus 168 l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 168 LEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp HHHTTCEEEEEEEETTT
T ss_pred HHHCCCEEEEEEeeCCc
Confidence 99999999988776553
No 12
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=97.85 E-value=5.7e-05 Score=62.01 Aligned_cols=146 Identities=18% Similarity=0.313 Sum_probs=87.7
Q ss_pred ccccCCC-CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 11 KWISHYT-NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~-~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.|..-|. +..+||-||=|.=.++..||+.+. ..++ ++.|..++..+ .+.+|++.....++ -+...|+.++..
T Consensus 30 ~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v--~giD~s~~~l~---~a~~~~~~~~~~nv-~~~~~d~~~l~~ 102 (213)
T 2fca_A 30 KWNTVFGNDNPIHIEVGTGKGQFISGMAKQNP-DINY--IGIELFKSVIV---TAVQKVKDSEAQNV-KLLNIDADTLTD 102 (213)
T ss_dssp CHHHHHTSCCCEEEEECCTTSHHHHHHHHHCT-TSEE--EEECSCHHHHH---HHHHHHHHSCCSSE-EEECCCGGGHHH
T ss_pred CHHHHcCCCCceEEEEecCCCHHHHHHHHHCC-CCCE--EEEEechHHHH---HHHHHHHHcCCCCE-EEEeCCHHHHHh
Confidence 4433344 577899999776666777888763 3444 45664444432 36666655432233 445568887642
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
. +....||.|+.|||-.-.+. +. ...+.+...|++.+..+|++||.+++.. +..+|-.|-+ +....+|
T Consensus 103 ~--~~~~~~d~v~~~~~~p~~~~----~~----~~~rl~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~-~~~~~~g 170 (213)
T 2fca_A 103 V--FEPGEVKRVYLNFSDPWPKK----RH----EKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSL-KSFSEYG 170 (213)
T ss_dssp H--CCTTSCCEEEEESCCCCCSG----GG----GGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHH-HHHHHHT
T ss_pred h--cCcCCcCEEEEECCCCCcCc----cc----cccccCcHHHHHHHHHHcCCCCEEEEEe-CCHHHHHHHH-HHHHHCC
Confidence 1 44567999999998543211 00 0112235788999999999999998873 2222334433 4445568
Q ss_pred CEEEEE
Q 041136 170 LVLKEK 175 (214)
Q Consensus 170 l~l~~~ 175 (214)
+.+...
T Consensus 171 ~~~~~~ 176 (213)
T 2fca_A 171 LLLTYV 176 (213)
T ss_dssp CEEEEE
T ss_pred Cccccc
Confidence 877653
No 13
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.85 E-value=7.3e-05 Score=64.07 Aligned_cols=127 Identities=7% Similarity=-0.018 Sum_probs=85.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++.+||-+|=|.=.||..+|+... . .+++.|..++..+ .+.+|++...-.+...+..-|+.++.. .
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~---~-~V~~vD~s~~~~~---~a~~n~~~n~~~~~v~~~~~D~~~~~~-----~ 190 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK---A-KVIAIEKDPYTFK---FLVENIHLNKVEDRMSAYNMDNRDFPG-----E 190 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC---C-EEEEECCCHHHHH---HHHHHHHHTTCTTTEEEECSCTTTCCC-----C
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC---C-EEEEEECCHHHHH---HHHHHHHHcCCCceEEEEECCHHHhcc-----c
Confidence 35588999998555556666777642 2 5666775554442 477777765433335577788887653 5
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--CC--CCcccHhhHHHhcCCE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--HP--YNQWNVMGLADKLGLV 171 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--~P--y~~W~i~~lA~~~gl~ 171 (214)
.+||.|+.|+|... ..|+..+..+|++||.+++..+.. .. ...-.+...+.+.|+.
T Consensus 191 ~~fD~Vi~~~p~~~--------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 191 NIADRILMGYVVRT--------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD 250 (278)
T ss_dssp SCEEEEEECCCSSG--------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred CCccEEEECCchhH--------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence 78999999999321 345567888999999998876642 11 1233466788899998
Q ss_pred EEE
Q 041136 172 LKE 174 (214)
Q Consensus 172 l~~ 174 (214)
+..
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
No 14
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=97.83 E-value=0.00031 Score=57.93 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++..+ . ..|+.|..++..+ .+.+++....-.+...+...|+.++. +.
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~--~v~~vD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 111 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--G--QITGIDLFPDFIE---IFNENAVKANCADRVKGITGSMDNLP----FQ 111 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--S--EEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCS----SC
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--C--eEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChhhCC----CC
Confidence 567788999999877777888998874 2 4455564443331 35555554432232556677887664 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCC---------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHP---------------Y 156 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~P---------------y 156 (214)
..+||.|+.+..-.-.. ...+++.+..+|+|||.+.|+-. ...+ .
T Consensus 112 ~~~fD~v~~~~~l~~~~-----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIG-----------------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEIS 174 (257)
T ss_dssp TTCEEEEEEESCSCCCC-----------------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCC
T ss_pred CCCEEEEEecChHhhcC-----------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCC
Confidence 67899999985432210 23577889999999999977642 1111 1
Q ss_pred CcccHhhHHHhcCCEEEEEecCCCCCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLKQDF 183 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~~~y 183 (214)
+.-.+..+.+++||...+...+....|
T Consensus 175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w 201 (257)
T 3f4k_A 175 VIPTCIDKMERAGYTPTAHFILPENCW 201 (257)
T ss_dssp BHHHHHHHHHHTTEEEEEEEECCGGGT
T ss_pred CHHHHHHHHHHCCCeEEEEEECChhhH
Confidence 222466788899999999888887777
No 15
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.80 E-value=4.4e-05 Score=71.12 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=102.7
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++.+||=+|=|-=..|..||...+....|+| .|..+...+ .+.+|++.+.-. ..+..-
T Consensus 86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~A--vDis~~~l~---~a~~n~~r~G~~--v~~~~~ 158 (464)
T 3m6w_A 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA--NEVDGKRVR---GLLENVERWGAP--LAVTQA 158 (464)
T ss_dssp CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHH---HHHHHHHHHCCC--CEEECS
T ss_pred ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCe--EEEEEC
Confidence 4444444334445567899999986655566668888764445554 564443331 467787776433 344556
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++++.. ....+||+|+.|-|..|.+.-..+. ....+.....+-..++..|..+|++||.+..+-|.-.|-
T Consensus 159 Da~~l~~---~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e 235 (464)
T 3m6w_A 159 PPRALAE---AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235 (464)
T ss_dssp CHHHHHH---HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred CHHHhhh---hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence 8887653 1246799999999998753211110 112234455677889999999999999998887876553
Q ss_pred -CcccHhhHHHhc-CCEEEE
Q 041136 157 -NQWNVMGLADKL-GLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l~~ 174 (214)
+.-.|..+.++. ++.+..
T Consensus 236 Ene~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 236 ENEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp GTHHHHHHHHHHCTTEEEEC
T ss_pred cCHHHHHHHHHHCCCcEEEe
Confidence 455666666655 676654
No 16
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.79 E-value=0.00034 Score=59.56 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=94.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++++||-+|=|.=.|+..||+..|+...|+| .|..++..+ .+.+ ..++.+..+..-.|++.....+..
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~---~l~~---~a~~~~ni~~V~~d~~~p~~~~~~ 144 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMR---DLLT---VVRDRRNIFPILGDARFPEKYRHL 144 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHH---HHHH---HSTTCTTEEEEESCTTCGGGGTTT
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHH---HHHH---hhHhhcCeeEEEEeccCccccccc
Confidence 46789999999998877777779999987667776 454344332 2222 223344444455678777665333
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------C-CCcccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------P-YNQWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------P-y~~W~i~~lA~ 166 (214)
...+|.|+-++||... ...++.++..+|+|||.+.|.++... | -...+.++..+
T Consensus 145 -~~~vDvVf~d~~~~~~------------------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~ 205 (233)
T 4df3_A 145 -VEGVDGLYADVAQPEQ------------------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLM 205 (233)
T ss_dssp -CCCEEEEEECCCCTTH------------------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHH
T ss_pred -cceEEEEEEeccCChh------------------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHH
Confidence 4579999999998752 13478889999999999999876432 1 11233455566
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
.+||.+.+...+++
T Consensus 206 ~~GF~l~e~i~L~p 219 (233)
T 4df3_A 206 DGGLEIKDVVHLDP 219 (233)
T ss_dssp HTTCCEEEEEECTT
T ss_pred HCCCEEEEEEccCC
Confidence 78999998876554
No 17
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.77 E-value=2.2e-05 Score=65.65 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-------CCCEEEEcccccc-CCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-------RGCLVLHGVNVHT-MDR 89 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-------~g~~Vl~~VDAt~-L~~ 89 (214)
...+||-||=|.=.|+..||+... ..-.++.|..+.+.+ .+.+|++.++. ..-..+...|+.+ |..
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~---~~~v~gvD~s~~~l~---~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~ 122 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFP---EDLILGMEIRVQVTN---YVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPN 122 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHST---TSEEEEEESCHHHHH---HHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---CCCEEEEEcCHHHHH---HHHHHHHHHhhccccccCCCcEEEEeccHHHHHHH
Confidence 467899999666666666888763 234556675444442 47777777632 1224455668876 443
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
.+....+|.|+.+||-.-.+.... ..+.+...|+..+..+|++||.+.+.. +...|..|-...+. ..+
T Consensus 123 --~~~~~~~d~v~~~~p~p~~k~~~~--------~~r~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~-~~~ 190 (246)
T 2vdv_E 123 --FFEKGQLSKMFFCFPDPHFKQRKH--------KARIITNTLLSEYAYVLKEGGVVYTIT-DVKDLHEWMVKHLE-EHP 190 (246)
T ss_dssp --TSCTTCEEEEEEESCCCC--------------CSSCCCHHHHHHHHHHEEEEEEEEEEE-SCHHHHHHHHHHHH-HST
T ss_pred --hccccccCEEEEECCCcccccchh--------HHhhccHHHHHHHHHHcCCCCEEEEEe-ccHHHHHHHHHHHH-hCc
Confidence 255678999999998765432110 112123678888999999999998753 22334556554444 444
Q ss_pred C
Q 041136 170 L 170 (214)
Q Consensus 170 l 170 (214)
.
T Consensus 191 ~ 191 (246)
T 2vdv_E 191 L 191 (246)
T ss_dssp T
T ss_pred C
Confidence 3
No 18
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=97.76 E-value=0.00045 Score=58.23 Aligned_cols=135 Identities=16% Similarity=0.073 Sum_probs=83.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .. +|+.|..++..+ .+.+++..........+...|+.++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~--v~gvd~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~------ 127 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGWGATMMRAVEKYD--VN--VVGLTLSKNQAN---HVQQLVANSENLRSKRVLLAGWEQFD------ 127 (287)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHTCCCCSCEEEEESCGGGCC------
T ss_pred CCCCcCEEEEECCcccHHHHHHHHHcC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCCeEEEECChhhCC------
Confidence 356788999999887778888998775 24 455554333321 24444332211112334455776542
Q ss_pred CCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------CCC-------
Q 041136 95 QMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----------DHP------- 155 (214)
Q Consensus 95 ~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----------~~P------- 155 (214)
.+||.|+.+. -|++.. -...+|+.+..+|+|||.+.|+-.. +.|
T Consensus 128 -~~fD~v~~~~~l~~~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHE----------------RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 190 (287)
T ss_dssp -CCCSEEEEESCGGGTCTT----------------THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHH
T ss_pred -CCeeEEEEeCchhhcChH----------------HHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccc
Confidence 6799999884 355421 2356778889999999998776422 111
Q ss_pred ---------------CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 ---------------YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 ---------------y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+++++||.+.+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 191 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred hhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 123356677888999998876543
No 19
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=97.75 E-value=0.0012 Score=56.22 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=88.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .+++ +.|..++..+ .+.+++....-.+..-+...|+.++
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~------- 134 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVI--GLTLSENQYA---HDKAMFDEVDSPRRKEVRIQGWEEF------- 134 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEE--EEECCHHHHH---HHHHHHHHSCCSSCEEEEECCGGGC-------
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhCC--CEEE--EEECCHHHHH---HHHHHHHhcCCCCceEEEECCHHHc-------
Confidence 346788999999777777888999885 3554 5553333321 3555554432222344555677765
Q ss_pred CCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------------------
Q 041136 95 QMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------------------ 154 (214)
Q Consensus 95 ~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------------------ 154 (214)
..+||.|+.+.. |+.... +. ...+-+..+|+.+..+|+|||.+.|.-....
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~---~~------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 205 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGA---GD------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLR 205 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCS---SC------CCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHH
T ss_pred CCCccEEEEcchHHhcCccc---cc------cchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccc
Confidence 467999999854 442110 00 0112456788999999999999876543211
Q ss_pred ----------C----CCcccHhhHHHhcCCEEEEEecCCC
Q 041136 155 ----------P----YNQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 155 ----------P----y~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
| .+.-.+..+++++||.+.+...+..
T Consensus 206 ~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 206 FIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp HHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred hHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 1 1122467788899999988766543
No 20
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.74 E-value=6.9e-05 Score=64.02 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=88.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+..-.++.+||=+|=|.=.++..|++.......|+| .|..+...+ .+.+|++.+.-.++ .+...|++++.....
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a--vD~~~~~l~---~~~~~~~~~g~~~v-~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVA--VEISKTRTK---ALKSNINRMGVLNT-IIINADMRKYKDYLL 151 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEE--EESCHHHHH---HHHHHHHHTTCCSE-EEEESCHHHHHHHHH
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEE--ECCCHHHHH---HHHHHHHHhCCCcE-EEEeCChHhcchhhh
Confidence 334567889999985544555558887643345555 453333221 35666665532233 344558876542100
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCc--ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHH-Hhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSE--QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLA-DKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~--~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA-~~~ 168 (214)
.....||+|+.|.|..|.+.-... .....+.....+...++..|..+|++||.+.++.|.-.|. +...|..+. +..
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~ 231 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRN 231 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCC
Confidence 014579999999999875320000 0001111122456788999999999999998888876653 444555543 445
Q ss_pred CCEEEE
Q 041136 169 GLVLKE 174 (214)
Q Consensus 169 gl~l~~ 174 (214)
++.+..
T Consensus 232 ~~~~~~ 237 (274)
T 3ajd_A 232 DVELII 237 (274)
T ss_dssp SEEEEC
T ss_pred CcEEec
Confidence 666653
No 21
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=97.74 E-value=0.0001 Score=59.32 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+..+||-||=|.=.++..|++. + .. .++.|..++..+ .+..++ ++.+ ...|+.++.
T Consensus 39 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~~vD~s~~~~~---~a~~~~------~~~~-~~~d~~~~~----- 98 (211)
T 3e23_A 39 GELPAGAKILELGCGAGYQAEAMLAA-G--FD--VDATDGSPELAA---EASRRL------GRPV-RTMLFHQLD----- 98 (211)
T ss_dssp TTSCTTCEEEESSCTTSHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHH------TSCC-EECCGGGCC-----
T ss_pred HhcCCCCcEEEECCCCCHHHHHHHHc-C--Ce--EEEECCCHHHHH---HHHHhc------CCce-EEeeeccCC-----
Confidence 34567889999997776677778876 2 34 455664343331 233333 3433 345666654
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC------------CCcccH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------YNQWNV 161 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------y~~W~i 161 (214)
...+||.|+.+..-.-. ..+-+..+++.+..+|++||.+.++...+.+ ++.-.+
T Consensus 99 ~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHV--------------PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWL 164 (211)
T ss_dssp CCSCEEEEEECSCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHH
T ss_pred CCCcEEEEEecCchhhc--------------CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHH
Confidence 35789999998633221 1234567888899999999999888665432 344567
Q ss_pred hhHHHhcC-CEEEEEecCCCCCCCC
Q 041136 162 MGLADKLG-LVLKEKVEFLKQDFPG 185 (214)
Q Consensus 162 ~~lA~~~g-l~l~~~~~F~~~~yPg 185 (214)
..+.+++| |.+.+........|++
T Consensus 165 ~~~l~~aG~f~~~~~~~~~~~~~~~ 189 (211)
T 3e23_A 165 RARYAEAGTWASVAVESSEGKGFDQ 189 (211)
T ss_dssp HHHHHHHCCCSEEEEEEEEEECTTS
T ss_pred HHHHHhCCCcEEEEEEeccCCCCCC
Confidence 88999999 9988876555444443
No 22
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.74 E-value=6.2e-05 Score=65.60 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=87.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||=|+=.++..|++..+ ...+++.-+| +++.+ .+.+++..+. ...+.+ +.-|+.++...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~a~~~~~~~~~~~~~~~v~~-~~~D~~~~~~~-- 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDID--GEVME---QSKQHFPQISRSLADPRATV-RVGDGLAFVRQ-- 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESC--HHHHH---HHHHHCHHHHGGGGCTTEEE-EESCHHHHHHS--
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECC--HHHHH---HHHHHhHHhhcccCCCcEEE-EECcHHHHHHh--
Confidence 5678999999888888888987642 3355555444 33331 3445554432 223444 44477654211
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEecCCCC----CCcccHhhHHHh
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTLRDDHP----YNQWNVMGLADK 167 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl~~~~P----y~~W~i~~lA~~ 167 (214)
....+||.||.|.|..... ...|. ..|++.+..+|++||.+.+..- .| ...+.+.+..++
T Consensus 165 ~~~~~fDvIi~d~~~~~~~-------------~~~l~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGP-------------ASKLFGEAFYKDVLRILKPDGICCNQGE--SIWLDLELIEKMSRFIRE 229 (304)
T ss_dssp SCTTCEEEEEEECC----------------------CCHHHHHHHHHHEEEEEEEEEEEC--CTTTCHHHHHHHHHHHHH
T ss_pred ccCCceeEEEECCCCcccc-------------chhhhHHHHHHHHHHhcCCCcEEEEecC--CcccchHHHHHHHHHHHh
Confidence 1246799999998874321 12232 7899999999999999877632 33 235667778888
Q ss_pred cCCEEEEEecCCCCCCC
Q 041136 168 LGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 168 ~gl~l~~~~~F~~~~yP 184 (214)
.||...+.....-..||
T Consensus 230 ~GF~~v~~~~~~vP~yp 246 (304)
T 3bwc_A 230 TGFASVQYALMHVPTYP 246 (304)
T ss_dssp HTCSEEEEEECCCTTST
T ss_pred CCCCcEEEEEeeccccc
Confidence 89977666554444454
No 23
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=97.73 E-value=0.00024 Score=59.45 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=94.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + ...+ |+.|..+...+ .+.++++...-.+-.-+...|+.++. +.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~ 111 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGH-V-TGQV--TGLDFLSGFID---IFNRNARQSGLQNRVTGIVGSMDDLP----FR 111 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTT-C-SSEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----CC
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCcCcEEEEcChhhCC----CC
Confidence 3677899999997777777778876 2 3344 45564333331 35555544432233555667887654 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCC----CCcc--------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHP----YNQW-------- 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~P----y~~W-------- 159 (214)
..+||.|+.+.+-.-. + ...+++.+..+|+|||.+.++-. ...+ ...|
T Consensus 112 ~~~fD~i~~~~~~~~~--------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI--------------G---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEID 174 (267)
T ss_dssp TTCEEEEEESSCGGGT--------------C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCE
T ss_pred CCCEEEEEEcCCceec--------------C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCC
Confidence 6789999998764221 0 24578889999999999876632 1111 1234
Q ss_pred ---cHhhHHHhcCCEEEEEecCCCCCC-CCCc
Q 041136 160 ---NVMGLADKLGLVLKEKVEFLKQDF-PGYH 187 (214)
Q Consensus 160 ---~i~~lA~~~gl~l~~~~~F~~~~y-PgY~ 187 (214)
.+..+.+++||.+.+...+....| ..|.
T Consensus 175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w~~~~~ 206 (267)
T 3kkz_A 175 TIPNQVAKIHKAGYLPVATFILPENCWTDHYF 206 (267)
T ss_dssp EHHHHHHHHHHTTEEEEEEEECCGGGTTTTTH
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHhHHHHHHH
Confidence 577788999999999888877666 5554
No 24
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.73 E-value=9.9e-05 Score=62.55 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CEEEEccccccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CLVLHGVNVHTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~Vl~~VDAt~L~~~- 90 (214)
+.....+||-+|-|.=.+++.|++... ....|+.|..++..+ .+.+|++.+...| -..++..|+.++...
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~---~~~v~gvDi~~~~~~---~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~ 106 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLE---KAEVTLYERSQEMAE---FARRSLELPDNAAFSARIEVLEADVTLRAKAR 106 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCT---TEEEEEEESSHHHHH---HHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCC---CCeEEEEECCHHHHH---HHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence 345678999999888788888988763 345566675555442 4667776522122 134455688765210
Q ss_pred --CCCCCCcccEEEEcCCCCCCCCCCCcccHH-HHHH--hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 91 --PTLSQMKFDVIIFNFPHAGHSPPLSEQDTN-LIKR--HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 91 --~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~-~i~~--n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
..+...+||.|+.|.|..... +....+.. .+.. ....+..|++.+..+|+++|.+.+.+.. ...-.+..++
T Consensus 107 ~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l 182 (260)
T 2ozv_A 107 VEAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSVAEIIAAC 182 (260)
T ss_dssp HHTTCCTTCEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGHHHHHHHH
T ss_pred hhhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHHHHHHHHH
Confidence 123457899999999987542 11111100 0000 1122788999999999999999876432 1222344444
Q ss_pred HhcCCEEEEEe
Q 041136 166 DKLGLVLKEKV 176 (214)
Q Consensus 166 ~~~gl~l~~~~ 176 (214)
.+. +...+..
T Consensus 183 ~~~-~~~~~i~ 192 (260)
T 2ozv_A 183 GSR-FGGLEIT 192 (260)
T ss_dssp TTT-EEEEEEE
T ss_pred Hhc-CCceEEE
Confidence 443 5544433
No 25
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.72 E-value=0.00033 Score=59.37 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=88.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++.+|++.++ ..++ |+.|..++..+ .+.+|++.+.-.++ .+...|+.+. +...
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v--~~vD~s~~~l~---~a~~n~~~~~~~~v-~~~~~d~~~~-----~~~~ 175 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-DCEI--IAVDRMPDAVS---LAQRNAQHLAIKNI-HILQSDWFSA-----LAGQ 175 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEE--EEECSSHHHHH---HHHHHHHHHTCCSE-EEECCSTTGG-----GTTC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCce-EEEEcchhhh-----cccC
Confidence 4677999999777777777888774 3344 45564444332 46777776642233 3444566542 2246
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----------HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----------KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----------~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
+||.|+.|+|..+... ..-..+.+ ......+..++..+..+|++||.+.+.... .+...+..+.
T Consensus 176 ~fD~Iv~npPy~~~~~--~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l 250 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQD--PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAF 250 (276)
T ss_dssp CEEEEEECCCCBCTTC--HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHH
T ss_pred CccEEEECCCCCCccc--cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHH
Confidence 7999999999886521 00000000 001246788999999999999999887322 3455677888
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
+++|+...+
T Consensus 251 ~~~Gf~~v~ 259 (276)
T 2b3t_A 251 ILAGYHDVE 259 (276)
T ss_dssp HHTTCTTCC
T ss_pred HHCCCcEEE
Confidence 888886433
No 26
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=97.69 E-value=0.00049 Score=56.62 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+.+||-+|=|.=.++..|++..+ ...+++ .|..++..+ .+.+|.+.. .+ ..+..-|+.+...+..+.
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~g--vD~s~~~~~---~a~~~~~~~--~~-v~~~~~d~~~~~~~~~~~ 141 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYA--IEYAPRIMR---ELLDACAER--EN-IIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEE--EESCHHHHH---HHHHHTTTC--TT-EEEEECCTTCGGGGTTTS
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEE--EECCHHHHH---HHHHHhhcC--CC-eEEEECCCCCcccccccC
Confidence 456788999999777667777998875 335554 554333321 244443322 23 334455777632211233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCCCC-------cccHhhHHH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHPYN-------QWNVMGLAD 166 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~Py~-------~W~i~~lA~ 166 (214)
..||.|+.++|..+ ....+++.+..+|+|+|.+.|++.. ..+.. ...+. +..
T Consensus 142 -~~~D~v~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~ 201 (230)
T 1fbn_A 142 -EKVDVIYEDVAQPN------------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILE 201 (230)
T ss_dssp -CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHH
T ss_pred -ccEEEEEEecCChh------------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHH
Confidence 67999995554322 2456778889999999999887542 11111 13344 667
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
.+||.+.+..++++
T Consensus 202 ~~Gf~~~~~~~~~~ 215 (230)
T 1fbn_A 202 AGGFKIVDEVDIEP 215 (230)
T ss_dssp HHTEEEEEEEECTT
T ss_pred HCCCEEEEEEccCC
Confidence 78999888776543
No 27
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=97.68 E-value=0.00027 Score=58.28 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+.+||-+|=|.=+++..|++.+++..++++ +|..++..+ .+.+|++.. . .....+...|+.++. +
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~---~a~~~~~~~~g-~~~v~~~~~d~~~~~----~ 162 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVES--YEARPHHLA---QAERNVRAFWQ-VENVRFHLGKLEEAE----L 162 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHH---HHHHHHHHHCC-CCCEEEEESCGGGCC----C
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEE--EeCCHHHHH---HHHHHHHHhcC-CCCEEEEECchhhcC----C
Confidence 4567889999998887888889998765455555 454333331 356666554 3 223344556777652 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.|.|.. ..++..+..+|+++|.+.+..... -....+.....+.|+...
T Consensus 163 ~~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 163 EEAAYDGVALDLMEP---------------------WKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp CTTCEEEEEEESSCG---------------------GGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred CCCCcCEEEECCcCH---------------------HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 446799999987642 145667888999999998874221 134455566667888766
Q ss_pred EEec
Q 041136 174 EKVE 177 (214)
Q Consensus 174 ~~~~ 177 (214)
+...
T Consensus 220 ~~~~ 223 (258)
T 2pwy_A 220 RVLE 223 (258)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 28
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.68 E-value=0.0002 Score=65.19 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=92.3
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-.++.+||-+|=|.=.++..|++..+. ..|+|.-.+... +. .+.+|++.+.. .+. +...|++++... +
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~-l~----~~~~~~~~~g~-~~~-~~~~D~~~~~~~--~ 311 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQR-LS----RVYDNLKRLGM-KAT-VKQGDGRYPSQW--C 311 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTT-HH----HHHHHHHHTTC-CCE-EEECCTTCTHHH--H
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHH-HH----HHHHHHHHcCC-CeE-EEeCchhhchhh--c
Confidence 34467889999986555556668887642 456665544321 21 35566655432 343 445688776421 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc-cHhh-HH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW-NVMG-LA 165 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W-~i~~-lA 165 (214)
....||+|+.|.|+.|.+.-....+ ...+.....+-..++..+..+|++||.+.++-|.-.|.... .|.. +.
T Consensus 312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~ 391 (429)
T 1sqg_A 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391 (429)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHH
Confidence 4468999999999987532111110 11233445667899999999999999998887776554333 3444 34
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
+..++.+..
T Consensus 392 ~~~~~~~~~ 400 (429)
T 1sqg_A 392 RTADAELCE 400 (429)
T ss_dssp HCTTCEECS
T ss_pred hCCCCEEeC
Confidence 445777653
No 29
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=97.67 E-value=0.00058 Score=55.66 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|=|.=.++..|++.++....++ +.|..++..+ .+.+|++.+ .++.+ ...|+.+......+ .
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~---~~~~~~~~~--~~v~~-~~~d~~~~~~~~~~-~ 141 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIF--GIEFSPRVLR---ELVPIVEER--RNIVP-ILGDATKPEEYRAL-V 141 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEE--EEESCHHHHH---HHHHHHSSC--TTEEE-EECCTTCGGGGTTT-C
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEE--EEECCHHHHH---HHHHHHhcc--CCCEE-EEccCCCcchhhcc-c
Confidence 56788999999777777788999886444554 4564443331 244444333 24444 45577764321112 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----CCC---cccHhhHHHh
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-----PYN---QWNVMGLADK 167 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-----Py~---~W~i~~lA~~ 167 (214)
.+||.|+.+.|+.. ....++..+..+|++||.+.++..... |.. ...+..+ ..
T Consensus 142 ~~~D~v~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~ 202 (227)
T 1g8a_A 142 PKVDVIFEDVAQPT------------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SE 202 (227)
T ss_dssp CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HT
T ss_pred CCceEEEECCCCHh------------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hh
Confidence 47999999988211 123456778999999999988754321 111 2345555 55
Q ss_pred cCCEEEEEecC
Q 041136 168 LGLVLKEKVEF 178 (214)
Q Consensus 168 ~gl~l~~~~~F 178 (214)
+ |.+.+....
T Consensus 203 ~-f~~~~~~~~ 212 (227)
T 1g8a_A 203 Y-FEVIERLNL 212 (227)
T ss_dssp T-SEEEEEEEC
T ss_pred h-ceeeeEecc
Confidence 5 888776554
No 30
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.65 E-value=0.00084 Score=53.39 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+ +||-||=|.=.++..|++. + . -.++.|..++..+ .+.+++.... .+ ..+...|+.++. +..
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~--~--~v~~vD~s~~~~~---~a~~~~~~~~-~~-~~~~~~d~~~~~----~~~ 92 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-G--Y--EVTAVDQSSVGLA---KAKQLAQEKG-VK-ITTVQSNLADFD----IVA 92 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-T--C--EEEEECSSHHHHH---HHHHHHHHHT-CC-EEEECCBTTTBS----CCT
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-C--C--eEEEEECCHHHHH---HHHHHHHhcC-Cc-eEEEEcChhhcC----CCc
Confidence 4556 9999997776667777764 2 3 4555665444432 3444444332 12 334455777653 445
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--------CCC------CCcccH
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--------DHP------YNQWNV 161 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--------~~P------y~~W~i 161 (214)
..||.|+.++.|.. ......+++.+..+|++||.+.++... +.| ++.-.+
T Consensus 93 ~~fD~v~~~~~~~~----------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (202)
T 2kw5_A 93 DAWEGIVSIFCHLP----------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETL 156 (202)
T ss_dssp TTCSEEEEECCCCC----------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHH
T ss_pred CCccEEEEEhhcCC----------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHH
Confidence 78999999988762 123567788899999999999777532 222 222334
Q ss_pred hhHHHhcCCEEEEEecCCCCCCCC
Q 041136 162 MGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
..+.+ ||.+............|
T Consensus 157 ~~~l~--Gf~v~~~~~~~~~~~~g 178 (202)
T 2kw5_A 157 QSELP--SLNWLIANNLERNLDEG 178 (202)
T ss_dssp HHHCS--SSCEEEEEEEEEECSCS
T ss_pred HHHhc--CceEEEEEEEEeecCCC
Confidence 44554 99888766655444333
No 31
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=97.64 E-value=0.00027 Score=59.86 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|-|.=.++.+|++.+++..++ +++|..++..+ .+.+|++.+.-.....+..-|+.+. +.
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 178 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKV--FAYEKREEFAK---LAESNLTKWGLIERVTIKVRDISEG-----FD 178 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEE--EEECCCHHHHH---HHHHHHHHTTCGGGEEEECCCGGGC-----CS
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEE--EEEECCHHHHH---HHHHHHHHcCCCCCEEEEECCHHHc-----cc
Confidence 34567899999988777788899887544444 45664443331 4666665542111234455577654 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.|.|.. ..++..+..+|+++|.+.+..... .....+.+..++.|+...+
T Consensus 179 ~~~~D~V~~~~~~~---------------------~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 179 EKDVDALFLDVPDP---------------------WNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp CCSEEEEEECCSCG---------------------GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred CCccCEEEECCcCH---------------------HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeE
Confidence 45799999987642 145566788999999998874221 1234555666678998776
Q ss_pred Eec
Q 041136 175 KVE 177 (214)
Q Consensus 175 ~~~ 177 (214)
...
T Consensus 236 ~~~ 238 (277)
T 1o54_A 236 VWE 238 (277)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
No 32
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=97.63 E-value=0.00052 Score=59.03 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-||=|.=.++..|++.++ .. .++.|..++..+ .+.++++.+.-.+...+..-|+.++. +..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 183 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SR--VEGVTLSAAQAD---FGNRRARELRIDDHVRSRVCNMLDTP----FDK 183 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----CCT
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CE--EEEEeCCHHHHH---HHHHHHHHcCCCCceEEEECChhcCC----CCC
Confidence 67789999999766667777888874 34 455664444332 35666655432223455666777653 456
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cCCCCC------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RDDHPY------------------ 156 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~~~Py------------------ 156 (214)
..||.|+.+.--.- + . ...+++.+..+|+|||.+.++- .....+
T Consensus 184 ~~fD~V~~~~~l~~------------~--~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 3vc1_A 184 GAVTASWNNESTMY------------V--D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI 246 (312)
T ss_dssp TCEEEEEEESCGGG------------S--C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC
T ss_pred CCEeEEEECCchhh------------C--C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC
Confidence 78999998744211 1 1 5677888999999999986553 222211
Q ss_pred -CcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 157 -NQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
+.-.+..+.+++||.+.+...+.+...|.|.
T Consensus 247 ~s~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~ 278 (312)
T 3vc1_A 247 HSRREYLRAMADNRLVPHTIVDLTPDTLPYWE 278 (312)
T ss_dssp CBHHHHHHHHHTTTEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 2233567888999999998877654444443
No 33
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.62 E-value=0.0001 Score=66.62 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++..|++. + ..| |+.|..+...+ .+.+|++.+. ..+.++ .-|+.++.. ...+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g--~~V--~gvDis~~al~---~A~~n~~~~~-~~v~~~-~~D~~~~~~----~~~~ 298 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-G--AEV--VGVEDDLASVL---SLQKGLEANA-LKAQAL-HSDVDEALT----EEAR 298 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-T--CEE--EEEESBHHHHH---HHHHHHHHTT-CCCEEE-ECSTTTTSC----TTCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-C--CEE--EEEECCHHHHH---HHHHHHHHcC-CCeEEE-Ecchhhccc----cCCC
Confidence 5679999996666666667775 2 344 45664444432 4667776543 234443 456665432 2478
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHhcCCE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADKLGLV 171 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~~gl~ 171 (214)
||.||.|.|...+.. .....+..|+..+..+|++||.+.|......+|..| ++..+ +..||.
T Consensus 299 fD~Ii~npp~~~~~~-----------~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~ 366 (381)
T 3dmg_A 299 FDIIVTNPPFHVGGA-----------VILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYK 366 (381)
T ss_dssp EEEEEECCCCCTTCS-----------SCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSE
T ss_pred eEEEEECCchhhccc-----------ccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEE
Confidence 999999999774321 123467789999999999999998886655555432 23334 667777
Q ss_pred EEEEecCC
Q 041136 172 LKEKVEFL 179 (214)
Q Consensus 172 l~~~~~F~ 179 (214)
+.+.....
T Consensus 367 Vl~a~~~~ 374 (381)
T 3dmg_A 367 VLFAEKRG 374 (381)
T ss_dssp EEEEECC-
T ss_pred EEEEEEec
Confidence 77655443
No 34
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.62 E-value=5.7e-05 Score=60.12 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=74.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-+|=|.=.++..|++... ..-.++.|..++..+ .+.+|+..+.. ++ .+...|+.+.-........
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~---~~~v~~vD~~~~~~~---~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP---GVSVTAVDLSMDALA---VARRNAERFGA-VV-DWAAADGIEWLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT---TEEEEEEECC------------------------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC---CCeEEEEECCHHHHH---HHHHHHHHhCC-ce-EEEEcchHhhhhhhhhccC
Confidence 6788999999888788888998853 344555664443331 35555554432 22 2334455541000001137
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----------HHhHHHHHHHHHHHHhccCCCCE-EEEEecCCCCCCcccHhhH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----------KRHKNLLEAFLKNGREMLGEGGE-VHVTLRDDHPYNQWNVMGL 164 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----------~~n~~LL~~Ff~Sa~~lL~~~G~-i~VTl~~~~Py~~W~i~~l 164 (214)
+||.|+.|.|....... ........ ....+.+..|++.+..+|+++|. +.+.+.. ...-.+..+
T Consensus 101 ~fD~i~~npp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~ 176 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEI-DQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---NQADEVARL 176 (215)
T ss_dssp CBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---SCHHHHHHH
T ss_pred cccEEEECCCCCCCccc-cccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---ccHHHHHHH
Confidence 89999999997654210 00000000 01123458999999999999999 6666432 223345556
Q ss_pred HH--hcCCEEEE
Q 041136 165 AD--KLGLVLKE 174 (214)
Q Consensus 165 A~--~~gl~l~~ 174 (214)
.. +.|+...+
T Consensus 177 l~~~~~gf~~~~ 188 (215)
T 4dzr_A 177 FAPWRERGFRVR 188 (215)
T ss_dssp TGGGGGGTEECC
T ss_pred HHHhhcCCceEE
Confidence 66 77876544
No 35
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.61 E-value=0.00036 Score=55.62 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||=|.=.++..|++. + ..+ ++.|..+++.+ .+.++ ..++. +...|+.++. +...+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~-----~~~~~-~~~~d~~~~~----~~~~~f 103 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-G--HQI--EGLEPATRLVE---LARQT-----HPSVT-FHHGTITDLS----DSPKRW 103 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-T--CCE--EEECCCHHHHH---HHHHH-----CTTSE-EECCCGGGGG----GSCCCE
T ss_pred CCeEEEecCCCCHHHHHHHhc-C--CeE--EEEeCCHHHHH---HHHHh-----CCCCe-EEeCcccccc----cCCCCe
Confidence 789999997776777778876 2 344 45564443331 12222 11343 4455777754 445789
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------CCcccHhhHH
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-------------YNQWNVMGLA 165 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-------------y~~W~i~~lA 165 (214)
|.|+.++.-.-.. .+-+..+++.+..+|++||.+.++...... ++.-.+..+.
T Consensus 104 D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (203)
T 3h2b_A 104 AGLLAWYSLIHMG--------------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQAL 169 (203)
T ss_dssp EEEEEESSSTTCC--------------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHH
T ss_pred EEEEehhhHhcCC--------------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHH
Confidence 9999975322211 012346778888999999999888755432 3344577899
Q ss_pred HhcCCEEEEEecCCC
Q 041136 166 DKLGLVLKEKVEFLK 180 (214)
Q Consensus 166 ~~~gl~l~~~~~F~~ 180 (214)
+++||.+.+...+..
T Consensus 170 ~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 170 ETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHTTEEEEEEEECTT
T ss_pred HHCCCcEEEEEecCC
Confidence 999999999877765
No 36
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.60 E-value=0.00014 Score=67.72 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=89.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||=+|=|-=+.+..||+..+....|+| .|..+...+ .+.+|++.+.-.+ ..+..-|++++... ....
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~a--vDis~~~l~---~~~~n~~r~g~~n-v~~~~~D~~~~~~~---~~~~ 187 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILA--NEFSASRVK---VLHANISRCGISN-VALTHFDGRVFGAA---VPEM 187 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEE--ECSSHHHHH---HHHHHHHHHTCCS-EEEECCCSTTHHHH---STTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCCc-EEEEeCCHHHhhhh---cccc
Confidence 7889999986555556668888754445555 454333321 4677877664333 34556688876421 2357
Q ss_pred ccEEEEcCCCCCCCCCCC--c----ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHhcC
Q 041136 98 FDVIIFNFPHAGHSPPLS--E----QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADKLG 169 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~--~----~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~~g 169 (214)
||+|+.|-|+.|.+.-.. + .....+.....+-..++.+|..+|++||.+.++-|.-.|. +.-.|..+.++.+
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 999999999987532000 0 1112233345566789999999999999998887765553 4444555555543
No 37
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=97.59 E-value=0.00011 Score=66.21 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=83.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+||-+|=|.=.++..|++... +..+ |+.|..+...+ .+.+|++.+.-.+ ..-++.-|+.+ .+.
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p-~~~V--~gvD~s~~al~---~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~ 289 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNP-QAKV--VFVDESPMAVA---SSRLNVETNMPEALDRCEFMINNALS-----GVE 289 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCT-TCEE--EEEESCHHHHH---HHHHHHHHHCGGGGGGEEEEECSTTT-----TCC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCC-CCEE--EEEECcHHHHH---HHHHHHHHcCCCcCceEEEEechhhc-----cCC
Confidence 3448999999666666777888762 3344 55664444432 4677776653111 12233445543 244
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHhc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADKL 168 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~~ 168 (214)
..+||.|+.|.|...... ....+...||+.+..+|++||.+.|......+|..| ++..+++..
T Consensus 290 ~~~fD~Ii~nppfh~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg~~~~~a~~~ 358 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHA-----------LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNN 358 (375)
T ss_dssp TTCEEEEEECCCC------------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHSCCEEEEECS
T ss_pred CCCeeEEEECCCcccCcc-----------cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcCCEEEEeeCC
Confidence 578999999999653210 112244578999999999999998876665566433 344456666
Q ss_pred CCEEEEE
Q 041136 169 GLVLKEK 175 (214)
Q Consensus 169 gl~l~~~ 175 (214)
||.+.++
T Consensus 359 ~F~V~~~ 365 (375)
T 4dcm_A 359 KFVVLKA 365 (375)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 7776664
No 38
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=97.59 E-value=9.1e-05 Score=61.46 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=85.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~~~~~~~ 96 (214)
+..+||-||=|.=.++..||+... ..++ ++.|..++..+ .+.++++...-.+ ..+...||.++ .. .+...
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v--~giD~s~~~l~---~a~~~~~~~~l~n-v~~~~~Da~~~l~~--~~~~~ 104 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRP-EQDF--LGIEVHSPGVG---ACLASAHEEGLSN-LRVMCHDAVEVLHK--MIPDN 104 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCT-TSEE--EEECSCHHHHH---HHHHHHHHTTCSS-EEEECSCHHHHHHH--HSCTT
T ss_pred CCCeEEEEeeeChHHHHHHHHHCC-CCeE--EEEEecHHHHH---HHHHHHHHhCCCc-EEEEECCHHHHHHH--HcCCC
Confidence 567899999666666666888763 3344 55675444432 3666665543233 45567788874 21 14467
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
+||.|+.|||-.-.+.. . ...+.+-..|++.+..+|+|||.+++... ..+|-.|-...+.+..++...
T Consensus 105 ~~d~v~~~~~~p~~~~~--~------~~rr~~~~~~l~~~~r~LkpGG~l~i~td-~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 105 SLRMVQLFFPDPWHKAR--H------NKRRIVQVPFAELVKSKLQLGGVFHMATD-WEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp CEEEEEEESCCCCCSGG--G------GGGSSCSHHHHHHHHHHEEEEEEEEEEES-CHHHHHHHHHHHHTSTTEEEC
T ss_pred ChheEEEeCCCCccchh--h------hhhhhhhHHHHHHHHHHcCCCcEEEEEeC-CHHHHHHHHHHHHhCCCcccc
Confidence 89999999875432210 0 01122234689999999999999987732 244666766666666665543
No 39
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=97.59 E-value=0.0015 Score=54.29 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=90.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ .+++ +.|..++..+ .+.+++......+...+...|+.++. +.
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 126 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATARD--VRVT--GISISRPQVN---QANARATAAGLANRVTFSYADAMDLP----FE 126 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHSC--CEEE--EEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----SC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEE--EEeCCHHHHH---HHHHHHHhcCCCcceEEEECccccCC----CC
Confidence 456788999999877777778888763 3454 4453333321 24444443321122444556777753 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCC------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHP------------------ 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~P------------------ 155 (214)
..+||.|+.+..-.-.. + ...+++.+..+|+|||.+.|+-.. ..|
T Consensus 127 ~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T 3bus_A 127 DASFDAVWALESLHHMP-------------D---RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGV 190 (273)
T ss_dssp TTCEEEEEEESCTTTSS-------------C---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCccEEEEechhhhCC-------------C---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCc
Confidence 57899999886533221 0 146788899999999998766321 111
Q ss_pred ---CCcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 156 ---YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 156 ---y~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
++.-.+..+.+++||.+.+...+.....+.|.
T Consensus 191 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 225 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAELVVTSTVDISAQARPSLV 225 (273)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTHHH
T ss_pred cCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHHHH
Confidence 22334667888999999887776554444443
No 40
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=97.56 E-value=0.00081 Score=54.75 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=84.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..|++. + .+++ +.|..++..+ .+.++. .. ....+...|+.++. +..
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~--~vD~s~~~~~---~a~~~~---~~-~~~~~~~~d~~~~~----~~~ 114 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-G--YKAV--GVDISEVMIQ---KGKERG---EG-PDLSFIKGDLSSLP----FEN 114 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-T--CEEE--EEESCHHHHH---HHHTTT---CB-TTEEEEECBTTBCS----SCT
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-C--CeEE--EEECCHHHHH---HHHhhc---cc-CCceEEEcchhcCC----CCC
Confidence 447889999997777777778876 2 3554 5554333321 122221 11 23345566777764 446
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------CC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------------------PY 156 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------------------Py 156 (214)
.+||.|+.+....-.. + ...+++.+..+|++||.+.|+..... .+
T Consensus 115 ~~fD~v~~~~~l~~~~----~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTE----E------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTM 178 (242)
T ss_dssp TCEEEEEEESCTTSSS----C------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCC
T ss_pred CCccEEEEcChHhhcc----C------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCC
Confidence 7899999876543221 0 12567888999999999988753211 14
Q ss_pred CcccHhhHHHhcCCEEEEEecCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+.+.+..+..++||.+.+...+.
T Consensus 179 ~~~~~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 179 MPWEFEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEeeccc
Confidence 45678899999999998876553
No 41
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.56 E-value=0.00034 Score=63.55 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=90.6
Q ss_pred ccccCCCC-CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 11 KWISHYTN-NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~~-~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.++..+.. +++||=+|=|.=.||..+|+. + .. +|+.|..++..+ .+.+|++.+. ....+. .-|+.++-.
T Consensus 206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~-g--a~--V~avDis~~al~---~a~~n~~~ng-~~~~~~-~~D~~~~l~ 275 (393)
T 4dmg_A 206 RLFEAMVRPGERVLDVYSYVGGFALRAARK-G--AY--ALAVDKDLEALG---VLDQAALRLG-LRVDIR-HGEALPTLR 275 (393)
T ss_dssp HHHHTTCCTTCEEEEESCTTTHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHHT-CCCEEE-ESCHHHHHH
T ss_pred HHHHHHhcCCCeEEEcccchhHHHHHHHHc-C--Ce--EEEEECCHHHHH---HHHHHHHHhC-CCCcEE-EccHHHHHH
Confidence 34445555 899999986655666667764 2 34 677885554442 5777877654 233444 667766422
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cc--cHhhHHH
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QW--NVMGLAD 166 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W--~i~~lA~ 166 (214)
. +... ||.||.|.|...... .. +..-......++..|..+|++||.+++..|...+.. .| .+...+.
T Consensus 276 ~--~~~~-fD~Ii~dpP~f~~~~----~~---~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~ 345 (393)
T 4dmg_A 276 G--LEGP-FHHVLLDPPTLVKRP----EE---LPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAA 345 (393)
T ss_dssp T--CCCC-EEEEEECCCCCCSSG----GG---HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred H--hcCC-CCEEEECCCcCCCCH----HH---HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 2334 999999999865421 11 233456677889999999999999987777765432 32 2445666
Q ss_pred hcCCEEE
Q 041136 167 KLGLVLK 173 (214)
Q Consensus 167 ~~gl~l~ 173 (214)
+.|..+.
T Consensus 346 ~~g~~~~ 352 (393)
T 4dmg_A 346 DLGRRLR 352 (393)
T ss_dssp HHTCCEE
T ss_pred HhCCeEE
Confidence 6776543
No 42
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=97.54 E-value=0.00041 Score=57.15 Aligned_cols=137 Identities=9% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ ..+ |+.|..++..+ .+.+++... ....+...|+.++. +.
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v--~~vD~s~~~~~---~a~~~~~~~---~~~~~~~~d~~~~~----~~ 117 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKYG--AHT--HGIDICSNIVN---MANERVSGN---NKIIFEANDILTKE----FP 117 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEE--EEEESCHHHHH---HHHHTCCSC---TTEEEEECCTTTCC----CC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHcC--CEE--EEEeCCHHHHH---HHHHHhhcC---CCeEEEECccccCC----CC
Confidence 456788999999887777888998873 344 55554333221 122222111 23444556777763 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------------------P 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------------------P 155 (214)
..+||.|+.+..-.-. ...-...+++.+..+|+|||.+.++-.... .
T Consensus 118 ~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (266)
T 3ujc_A 118 ENNFDLIYSRDAILAL--------------SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183 (266)
T ss_dssp TTCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCC
T ss_pred CCcEEEEeHHHHHHhc--------------ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCC
Confidence 6789999998532211 113446788889999999999877642111 1
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+.+++||...+...+.
T Consensus 184 ~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 184 ITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCHHHHHHHHHHcCCeEEEEEeCC
Confidence 234457788889999998876554
No 43
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=97.54 E-value=0.00024 Score=60.93 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=87.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..||....++.+ .++.|..++..+ .+.+++......+...+...|+.++. +.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~- 185 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ--LVGIDYDPEALD---GATRLAAGHALAGQITLHRQDAWKLD----TR- 185 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE--EEEEESCHHHHH---HHHHHHTTSTTGGGEEEEECCGGGCC----CC-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECchhcCC----cc-
Confidence 456889999997766666667533323334 455664443331 34444433221122556677888864 33
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-------------------- 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-------------------- 155 (214)
..||.|+.|.+..-.. +..-...+++.+..+|+|||.+.|+.....|
T Consensus 186 ~~fD~v~~~~~~~~~~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~ 252 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEP-------------DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL 252 (305)
T ss_dssp SCEEEEECCSSGGGCC-------------CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred CCeEEEEECChhhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence 7899999987654321 1234556888899999999999887532111
Q ss_pred ----------------CCcccHhhHHHhcCCEEEEEec
Q 041136 156 ----------------YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 156 ----------------y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
++.-.+..+.+++||...+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 253 QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred hhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 2334466788899999988765
No 44
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.53 E-value=0.00025 Score=63.45 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=89.4
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+..+ .+.+||-+|=|.=+|+..+|+. . --+++.|..++..+ .+.+|++.+.-.+ ..++.-|+.++-....
T Consensus 205 ~~~~-~~~~VLDlg~G~G~~~~~la~~-~----~~v~~vD~s~~~~~---~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~ 274 (382)
T 1wxx_A 205 MERF-RGERALDVFSYAGGFALHLALG-F----REVVAVDSSAEALR---RAEENARLNGLGN-VRVLEANAFDLLRRLE 274 (382)
T ss_dssp GGGC-CEEEEEEETCTTTHHHHHHHHH-E----EEEEEEESCHHHHH---HHHHHHHHTTCTT-EEEEESCHHHHHHHHH
T ss_pred HHhc-CCCeEEEeeeccCHHHHHHHHh-C----CEEEEEECCHHHHH---HHHHHHHHcCCCC-ceEEECCHHHHHHHHH
Confidence 3344 6789999996666667667776 2 23555665444332 4777777654334 4455667766421100
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhcC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKLG 169 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~g 169 (214)
-...+||.||.|.|..+.... . +.........++..+..+|+++|.+.++.+...+- +.| + +.+.+.+.|
T Consensus 275 ~~~~~fD~Ii~dpP~~~~~~~----~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g 347 (382)
T 1wxx_A 275 KEGERFDLVVLDPPAFAKGKK----D---VERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAH 347 (382)
T ss_dssp HTTCCEEEEEECCCCSCCSTT----S---HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred hcCCCeeEEEECCCCCCCChh----H---HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 014689999999998775321 1 23345677889999999999999998887765432 122 2 334666776
Q ss_pred CEE
Q 041136 170 LVL 172 (214)
Q Consensus 170 l~l 172 (214)
..+
T Consensus 348 ~~~ 350 (382)
T 1wxx_A 348 RLL 350 (382)
T ss_dssp CCE
T ss_pred CeE
Confidence 433
No 45
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=97.50 E-value=0.00047 Score=56.68 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=86.3
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+...++..+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.++ + -+...|+.++.. .
T Consensus 36 l~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~--------~-~~~~~d~~~~~~--~ 96 (240)
T 3dli_A 36 IPYFKGCRRVLDIGCGRGEFLELCKEE-G--IES--IGVDINEDMIK---FCEGK--------F-NVVKSDAIEYLK--S 96 (240)
T ss_dssp GGGTTTCSCEEEETCTTTHHHHHHHHH-T--CCE--EEECSCHHHHH---HHHTT--------S-EEECSCHHHHHH--T
T ss_pred HhhhcCCCeEEEEeCCCCHHHHHHHhC-C--CcE--EEEECCHHHHH---HHHhh--------c-ceeeccHHHHhh--h
Confidence 334567899999996666667778876 3 355 56664333321 12222 3 344566665421 2
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------------CC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------------PY 156 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------------Py 156 (214)
+...+||.|+.+.--.-. ...-+..+++.+..+|+|||.+.++.-... ++
T Consensus 97 ~~~~~fD~i~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHL--------------DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPV 162 (240)
T ss_dssp SCTTCBSEEEEESCGGGS--------------CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCC
T ss_pred cCCCCeeEEEECCchhhC--------------CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccC
Confidence 456789999987432111 111346788889999999999988754321 23
Q ss_pred CcccHhhHHHhcCCEEEEEecCCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
+...+..+.+++||.+.+...+.+
T Consensus 163 ~~~~l~~~l~~aGf~~~~~~~~~~ 186 (240)
T 3dli_A 163 HPETLKFILEYLGFRDVKIEFFEE 186 (240)
T ss_dssp CHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCeEEEEEEecc
Confidence 455688899999999998887764
No 46
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=97.50 E-value=4.4e-05 Score=64.19 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh---C--CCEEEEcccccc-CCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS---R--GCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---~--g~~Vl~~VDAt~-L~~~~ 91 (214)
...+||-||=|.=.|+..||+.+. ..+ .++.|..+.+.+ .|.++++.|+. . .-.-+...||.+ |...
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~--v~GiDis~~~l~---~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~- 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFP-DTL--ILGLEIRVKVSD---YVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF- 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGST-TSE--EEEEESCHHHHH---HHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH-
T ss_pred CCCeEEEEccCCcHHHHHHHHHCC-CCe--EEEEECCHHHHH---HHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh-
Confidence 456799999666556666888763 334 456675444442 47777777653 1 223445568875 4321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
+....||+|+.+||-.-.+. +. ...+.+...|++.+..+|++||.++++... ..|..|-+..+....++.
T Consensus 119 -~~~~~~D~v~~~~~dp~~k~----~h----~krr~~~~~~l~~~~~~LkpGG~l~~~td~-~~~~~~~~~~l~~~~~f~ 188 (235)
T 3ckk_A 119 -FYKGQLTKMFFLFPDPHFKR----TK----HKWRIISPTLLAEYAYVLRVGGLVYTITDV-LELHDWMCTHFEEHPLFE 188 (235)
T ss_dssp -CCTTCEEEEEEESCC-------------------CCCHHHHHHHHHHEEEEEEEEEEESC-HHHHHHHHHHHHTSTTEE
T ss_pred -CCCcCeeEEEEeCCCchhhh----hh----hhhhhhhHHHHHHHHHHCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCcc
Confidence 44568999999998543221 00 112223467899999999999999887432 335667776666555444
Q ss_pred E
Q 041136 172 L 172 (214)
Q Consensus 172 l 172 (214)
.
T Consensus 189 ~ 189 (235)
T 3ckk_A 189 R 189 (235)
T ss_dssp E
T ss_pred c
Confidence 3
No 47
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=97.49 E-value=0.0017 Score=53.25 Aligned_cols=136 Identities=9% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+.+.+||-+|=|.=.++..|++.+++...++ +.|..++..+ .+.++.+.. .++ .+...|+.+....+ +.
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~--gvD~s~~~i~---~~~~~a~~~--~~v-~~~~~d~~~~~~~~-~~ 144 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVY--AVEFSHRSGR---DLINLAKKR--TNI-IPVIEDARHPHKYR-ML 144 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEE--EECCCHHHHH---HHHHHHHHC--TTE-EEECSCTTCGGGGG-GG
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEE--EEECCHHHHH---HHHHHhhcc--CCe-EEEEcccCChhhhc-cc
Confidence 356788999999777777777999886444554 5564333221 222333222 233 45566777643211 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----C----CCcccHhhHH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-----P----YNQWNVMGLA 165 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-----P----y~~W~i~~lA 165 (214)
..+||.|+.|.|... ....++..+..+|+++|.+.|+..... | +..+ .++.
T Consensus 145 ~~~~D~V~~~~~~~~------------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~l 204 (233)
T 2ipx_A 145 IAMVDVIFADVAQPD------------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE--VKKM 204 (233)
T ss_dssp CCCEEEEEECCCCTT------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH--HHTT
T ss_pred CCcEEEEEEcCCCcc------------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH--HHHH
Confidence 467999999988211 123455668899999999988765311 1 1111 3566
Q ss_pred HhcCCEEEEEecCC
Q 041136 166 DKLGLVLKEKVEFL 179 (214)
Q Consensus 166 ~~~gl~l~~~~~F~ 179 (214)
.++||.+.+..+.+
T Consensus 205 ~~~Gf~~~~~~~~~ 218 (233)
T 2ipx_A 205 QQENMKPQEQLTLE 218 (233)
T ss_dssp GGGTEEEEEEEECT
T ss_pred HHCCCceEEEEecC
Confidence 78899998876655
No 48
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.49 E-value=0.00098 Score=51.81 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~ 93 (214)
+..++.+||-+|=|.=.++..+++. +.+++++ |..++..+ .+.+++......+ ...+...|+.+. +
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~--D~~~~~~~---~a~~~~~~~~~~~~~~~~~~~d~~~~-----~ 115 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADE---VKSTTMA--DINRRAIK---LAKENIKLNNLDNYDIRVVHSDLYEN-----V 115 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEE--ESCHHHHH---HHHHHHHHTTCTTSCEEEEECSTTTT-----C
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEE--ECCHHHHH---HHHHHHHHcCCCccceEEEECchhcc-----c
Confidence 3457889999997766666667776 2355554 53333331 3555555443222 133444566552 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....||.|+.|.|.... ...+..+++.+..+|+++|.+.++...
T Consensus 116 ~~~~~D~v~~~~~~~~~---------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 116 KDRKYNKIITNPPIRAG---------------KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTC---------------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEECCCcccc---------------hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 35679999999986431 235667889999999999999888554
No 49
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=97.47 E-value=0.00057 Score=56.57 Aligned_cols=131 Identities=11% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|-|.=.++..|++.+++...+ +++|..++..+ .+.+|++...-.+...+..-|+.+. +.
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v--~~~D~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 159 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRV--VSYEIREDFAK---LAWENIKWAGFDDRVTIKLKDIYEG-----IE 159 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEE--EEECSCHHHHH---HHHHHHHHHTCTTTEEEECSCGGGC-----CC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEE--EEEecCHHHHH---HHHHHHHHcCCCCceEEEECchhhc-----cC
Confidence 45678899999988777888899987654455 45565444432 4677777654334355666777743 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC--CEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG--LVL 172 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g--l~l 172 (214)
...||.|+.|.|.. ..++..+..+|+++|.+.+..-.. .....+....++.| +..
T Consensus 160 ~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 160 EENVDHVILDLPQP---------------------ERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp CCSEEEEEECSSCG---------------------GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHTGGGBSC
T ss_pred CCCcCEEEECCCCH---------------------HHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccc
Confidence 56799999987732 235677889999999998762111 12334556667788 766
Q ss_pred EEEecC
Q 041136 173 KEKVEF 178 (214)
Q Consensus 173 ~~~~~F 178 (214)
.+....
T Consensus 217 ~~~~e~ 222 (255)
T 3mb5_A 217 PRTINV 222 (255)
T ss_dssp CEEECC
T ss_pred cEEEEE
Confidence 665443
No 50
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.47 E-value=0.00079 Score=53.40 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|.=.++..+++. + ... .|+.|..++..+ .+.+|++.+.. ....+..-|+.++.. .+...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~~ 112 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G-AAS--VLFVESDQRSAA---VIARNIEALGL-SGATLRRGAVAAVVA--AGTTS 112 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-CSE--EEEEECCHHHHH---HHHHHHHHHTC-SCEEEEESCHHHHHH--HCCSS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C-CCe--EEEEECCHHHHH---HHHHHHHHcCC-CceEEEEccHHHHHh--hccCC
Confidence 46789999985555555545553 2 223 455664444442 46777776643 334455667776532 12357
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHh--ccCCCCEEEEEecCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGRE--MLGEGGEVHVTLRDD 153 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~--lL~~~G~i~VTl~~~ 153 (214)
+||.|+.|.|.... ...+..++..+.. +|+++|.+.|.....
T Consensus 113 ~fD~i~~~~p~~~~---------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 113 PVDLVLADPPYNVD---------------SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCSEEEECCCTTSC---------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CccEEEECCCCCcc---------------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 89999999996542 1345556666666 999999998886543
No 51
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=97.47 E-value=0.00049 Score=56.78 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=84.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....++.+||-||=|.=.++..|++... . .|+.|..++..+ .+.+++....-.++. +...|+.++. +
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--v~~vD~s~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~----~ 83 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ---E--CIGVDATKEMVE---VASSFAQEKGVENVR-FQQGTAESLP----F 83 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS---E--EEEEESCHHHHH---HHHHHHHHHTCCSEE-EEECBTTBCC----S
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC---E--EEEEECCHHHHH---HHHHHHHHcCCCCeE-EEecccccCC----C
Confidence 3557789999999777667777877642 3 455665444432 355555443322343 3455777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--------------------
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-------------------- 153 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-------------------- 153 (214)
....||.|+.++.-.-.. -...+++.+..+|++||.+.++-...
T Consensus 84 ~~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFS----------------DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPS 147 (239)
T ss_dssp CTTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCcEEEEEECCchhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhcccc
Confidence 567899999986432211 12467888899999999997763211
Q ss_pred --CCCCcccHhhHHHhcCCEEEEEecC
Q 041136 154 --HPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 --~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
..++.-.+..+.+++||.......+
T Consensus 148 ~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 148 HVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 1133334667888899988775544
No 52
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=97.45 E-value=0.00046 Score=58.52 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
...++.+||-+|=|.=.++..|++...+...+ +++|..++..+ .+.+|++.+ . .....+...|+.+ .+
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~~g-~~~v~~~~~d~~~-----~~ 175 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTL--TVVERDEDNLK---KAMDNLSEFYD-IGNVRTSRSDIAD-----FI 175 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEE--EEECSCHHHHH---HHHHHHHTTSC-CTTEEEECSCTTT-----CC
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEE--EEEECCHHHHH---HHHHHHHhcCC-CCcEEEEECchhc-----cC
Confidence 45678899999988777888899885444444 55565444332 355665543 2 1223344557765 23
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.+.|+. ..+++.+..+|+++|.+.+..... ....++.....+.|+...
T Consensus 176 ~~~~fD~Vi~~~~~~---------------------~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 176 SDQMYDAVIADIPDP---------------------WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp CSCCEEEEEECCSCG---------------------GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEE
T ss_pred cCCCccEEEEcCcCH---------------------HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCeEE
Confidence 456899999977642 145677889999999998874321 133556666677899887
Q ss_pred EEec
Q 041136 174 EKVE 177 (214)
Q Consensus 174 ~~~~ 177 (214)
+...
T Consensus 233 ~~~~ 236 (275)
T 1yb2_A 233 ETVE 236 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7554
No 53
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=97.45 E-value=0.00046 Score=55.65 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-------EEEEccccccCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-------LVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-------~Vl~~VDAt~L~ 88 (214)
.+...+||-||=|.=.++..|++. + .++ ++.|..+...+ .+.+++ +..+. .-+...|+..+.
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~---~~~~~~~~~~~~~~~~~~d~~~~~ 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--YSV--TGIDINSEAIR---LAETAA---RSPGLNQKTGGKAEFKVENASSLS 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHT---TCCSCCSSSSCEEEEEECCTTSCC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--CeE--EEEECCHHHHH---HHHHHH---HhcCCccccCcceEEEEecccccC
Confidence 457889999997766677778776 2 344 45564333321 233332 22333 344555666653
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC---------------
Q 041136 89 RHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--------------- 153 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--------------- 153 (214)
+...+||.|+.+....-.. +.+....+++.+..+|++||.+.++-...
T Consensus 97 ----~~~~~~D~v~~~~~l~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
T 3sm3_A 97 ----FHDSSFDFAVMQAFLTSVP-------------DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF 159 (235)
T ss_dssp ----SCTTCEEEEEEESCGGGCC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHH
T ss_pred ----CCCCceeEEEEcchhhcCC-------------CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhc
Confidence 4567899999986544321 12334578888999999999997763211
Q ss_pred -----------------------CCCCcccHhhHHHhcCCEEEEEe
Q 041136 154 -----------------------HPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 154 -----------------------~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
..++.-.+..+.+++||.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 160 PITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred cchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 01344557788889999988754
No 54
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.45 E-value=0.0014 Score=57.53 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=94.5
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++++||=+|=|-=+.+..||...+....|+|.-.+. +.+. .+.+|++.+.-.++ .+..-
T Consensus 87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~-~~l~----~~~~n~~r~g~~~v-~~~~~ 160 (309)
T 2b9e_A 87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA-KRLA----SMATLLARAGVSCC-ELAEE 160 (309)
T ss_dssp CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH-HHHH----HHHHHHHHTTCCSE-EEEEC
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH-HHHH----HHHHHHHHcCCCeE-EEEeC
Confidence 444444443344456788999887555555555888775444566654433 2222 46677766543233 44566
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCC--cc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLS--EQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~--~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
|+.++.... -....||+|+.|-|..|.+.-.. |. ....+.....+-...+..|..+|+ +|.+..+-|.-.
T Consensus 161 D~~~~~~~~-~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 161 DFLAVSPSD-PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp CGGGSCTTC-GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred ChHhcCccc-cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 888875421 01146999999999987643111 10 001123334556778888998887 898877777655
Q ss_pred C-CCcccHhhHHHhc-C-CEEEE
Q 041136 155 P-YNQWNVMGLADKL-G-LVLKE 174 (214)
Q Consensus 155 P-y~~W~i~~lA~~~-g-l~l~~ 174 (214)
| -+...|....+++ + +.+..
T Consensus 239 ~~Ene~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 239 QEENEDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp GGGTHHHHHHHHTTSTTTEEECC
T ss_pred hHHhHHHHHHHHHhCCCcEEEec
Confidence 5 3456666655544 5 66653
No 55
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=97.44 E-value=0.00083 Score=56.74 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=91.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||=||-|.=..+..||..++ +.-.|+.|..+...+ .+.+|++.+.-.++.+ +.-|+.++...+ ...
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~---~~~v~~vD~s~~~~~---~a~~~~~~~~l~~v~~-~~~d~~~~~~~~-~~~ 149 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRP---ELELVLVDATRKKVA---FVERAIEVLGLKGARA-LWGRAEVLAREA-GHR 149 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCT---TCEEEEEESCHHHHH---HHHHHHHHHTCSSEEE-EECCHHHHTTST-TTT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHhCCCceEE-EECcHHHhhccc-ccC
Confidence 46788999999776666667887763 344577786555442 5788888876545444 445777765311 124
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~ 174 (214)
.+||.|+.+- +. + +..+++.+..+|++||.+.+.... .+.. .-.+...++..|+.+.+
T Consensus 150 ~~fD~I~s~a--~~---------------~---~~~ll~~~~~~LkpgG~l~~~~g~-~~~~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 150 EAYARAVARA--VA---------------P---LCVLSELLLPFLEVGGAAVAMKGP-RVEEELAPLPPALERLGGRLGE 208 (249)
T ss_dssp TCEEEEEEES--SC---------------C---HHHHHHHHGGGEEEEEEEEEEECS-CCHHHHTTHHHHHHHHTEEEEE
T ss_pred CCceEEEECC--cC---------------C---HHHHHHHHHHHcCCCeEEEEEeCC-CcHHHHHHHHHHHHHcCCeEEE
Confidence 6799999852 11 0 246788899999999998765322 1212 23355667788999999
Q ss_pred EecCCCCCCCCC
Q 041136 175 KVEFLKQDFPGY 186 (214)
Q Consensus 175 ~~~F~~~~yPgY 186 (214)
..++......+.
T Consensus 209 ~~~~~~p~~~~~ 220 (249)
T 3g89_A 209 VLALQLPLSGEA 220 (249)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEeeCCCCCCc
Confidence 888744333333
No 56
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.41 E-value=0.00034 Score=60.95 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.+++.+||=+|=|-=.||..+|+. + +..++| .|..+... ..+.+|++.+.-.+....++-||.++..
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~a--vD~np~a~---~~~~~N~~~N~v~~~v~~~~~D~~~~~~----- 189 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIA--IEKDPYTF---KFLVENIHLNKVEDRMSAYNMDNRDFPG----- 189 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEE--ECCCHHHH---HHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEE--EECCHHHH---HHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence 3567899988774444444446654 3 345655 55433333 2578888877655667778889987643
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--CCCCCCccc---HhhHHHhcC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--DDHPYNQWN---VMGLADKLG 169 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~~~Py~~W~---i~~lA~~~g 169 (214)
...||+||.|.|+... .|+..|..+|++||-||+--. +... ..|. +..+++..|
T Consensus 190 ~~~~D~Vi~~~p~~~~--------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~-~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 190 ENIADRILMGYVVRTH--------------------EFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYG 248 (278)
T ss_dssp CSCEEEEEECCCSSGG--------------------GGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTT
T ss_pred ccCCCEEEECCCCcHH--------------------HHHHHHHHHcCCCCEEEEEeeeccccc-chhHHHHHHHHHHHcC
Confidence 4679999999997431 256678889999999987432 2221 2232 456788888
Q ss_pred CEEE
Q 041136 170 LVLK 173 (214)
Q Consensus 170 l~l~ 173 (214)
+.+.
T Consensus 249 ~~v~ 252 (278)
T 3k6r_A 249 YDVE 252 (278)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 8653
No 57
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=97.41 E-value=0.00014 Score=64.03 Aligned_cols=114 Identities=24% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=.++..|++... ... .|+.|..+...+ .+.+|+.... ..+.+ +..|+... ...+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~-~~~--v~~vD~s~~~l~---~a~~~~~~~~-~~~~~-~~~d~~~~------~~~~ 261 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP-KIR--LTLCDVSAPAVE---ASRATLAANG-VEGEV-FASNVFSE------VKGR 261 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT-TCB--CEEEESBHHHHH---HHHHHHHHTT-CCCEE-EECSTTTT------CCSC
T ss_pred CCCeEEEecCccCHHHHHHHHHCC-CCE--EEEEECCHHHHH---HHHHHHHHhC-CCCEE-EEcccccc------ccCC
Confidence 456899999666666667887752 234 455665444332 3566665432 22344 44455432 2467
Q ss_pred ccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC
Q 041136 98 FDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157 (214)
Q Consensus 98 FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~ 157 (214)
||.|+.|.|.. |. ..+......+++.+..+|++||.+.|......||.
T Consensus 262 fD~Iv~~~~~~~g~------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 310 (343)
T 2pjd_A 262 FDMIISNPPFHDGM------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (343)
T ss_dssp EEEEEECCCCCSSS------------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH
T ss_pred eeEEEECCCcccCc------------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH
Confidence 99999999965 42 23456788999999999999999988866655553
No 58
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=97.37 E-value=0.0012 Score=56.70 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .. .|+.|..++..+ .+.+++......+...+...|+.++.
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~------ 153 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERFD--VN--VIGLTLSKNQHA---RCEQVLASIDTNRSRQVLLQGWEDFA------ 153 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHTSCCSSCEEEEESCGGGCC------
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHCC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECChHHCC------
Confidence 456788999999877777888998874 34 455564333321 24444433211122344556777652
Q ss_pred CCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.+.. |++. .-+..+++.+..+|+|||.+.|+.
T Consensus 154 -~~fD~v~~~~~l~~~~~----------------~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGH----------------ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp -CCCSEEEEESCGGGTCG----------------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCcCEEEEeChHHhcCH----------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 57999998853 3331 124567888899999999987764
No 59
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.37 E-value=0.00034 Score=53.28 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=78.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~ 91 (214)
..+..+||-+|-|.=.++..|++.++....++++-.+. +.+ . .++.+ ...|+.++... .
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~-~------------~~~~~-~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDP-I------------VGVDF-LQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCC-C------------TTEEE-EESCTTSHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---ccc-c------------CcEEE-EEcccccchhhhhhhc
Confidence 56778999999877677777998886545677765554 221 1 23333 44576654200 0
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
.+...+||.|+.|.|-..... .. .. ......++..+++.+..+|+++|.+.++..... ....+......
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~--~~--~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~ 151 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGT--PA--VD-IPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRS 151 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSC--HH--HH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHH
T ss_pred cCCCCceeEEEECCCccccCC--Cc--cc-hHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHH
Confidence 033468999999998543311 11 11 123455678999999999999999988755433 23334444443
No 60
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=97.37 E-value=0.0019 Score=53.84 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||=|.=.++..|++... +.. .++.|..+...+ .+.+++....-.+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~--v~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~ 102 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNP-DAE--ITSIDISPESLE---KARENTEKNGIKN-VKFLQANIFSLP----FE 102 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT-TSE--EEEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCGGGCC----SC
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCC-CCE--EEEEECCHHHHH---HHHHHHHHcCCCC-cEEEEcccccCC----CC
Confidence 456889999999777777888888753 334 455665444332 3555554432222 445556777654 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---------------------- 152 (214)
..+||.|+.+..-.-... ...+++.+..+|+|||.+.++..+
T Consensus 103 ~~~fD~v~~~~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQS----------------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR 166 (276)
T ss_dssp TTCEEEEEEESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH
T ss_pred CCCeeEEEEechhhhcCC----------------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH
Confidence 578999999875432210 126778888999999999886421
Q ss_pred ------CCCCCcccHhhHHHhcCCEEEEEecC
Q 041136 153 ------DHPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 153 ------~~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+.|+..-.+..+.+++||...+..++
T Consensus 167 ~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 167 VQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 11222334667888999998776544
No 61
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.37 E-value=0.00061 Score=54.53 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + ...+ ++.|..++..+ .+.+|+......++. +..-|+.+. ...
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~------~~~ 124 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-G-AKSV--LATDISDESMT---AAEENAALNGIYDIA-LQKTSLLAD------VDG 124 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-T-CSEE--EEEESCHHHHH---HHHHHHHHTTCCCCE-EEESSTTTT------CCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-C-CCEE--EEEECCHHHHH---HHHHHHHHcCCCceE-EEecccccc------CCC
Confidence 46789999997766677667763 2 2244 45564444332 466666655433433 445566542 236
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|.|. ..+..+++.+..+|+++|.+.++-.. +.+...+..+..++|+.+.+..
T Consensus 125 ~fD~i~~~~~~-------------------~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 125 KFDLIVANILA-------------------EILLDLIPQLDSHLNEDGQVIFSGID--YLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp CEEEEEEESCH-------------------HHHHHHGGGSGGGEEEEEEEEEEEEE--GGGHHHHHHHHHHTTEEEEEEE
T ss_pred CceEEEECCcH-------------------HHHHHHHHHHHHhcCCCCEEEEEecC--cccHHHHHHHHHHcCCceEEee
Confidence 89999999753 12478899999999999999875221 1245567788899999987754
Q ss_pred c
Q 041136 177 E 177 (214)
Q Consensus 177 ~ 177 (214)
.
T Consensus 184 ~ 184 (205)
T 3grz_A 184 R 184 (205)
T ss_dssp E
T ss_pred c
Confidence 3
No 62
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=97.37 E-value=0.0023 Score=54.09 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ .. .|+.|..++..+ .+.+++.........-+...|+.++. +.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 147 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VS--IDCLNIAPVQNK---RNEEYNNQAGLADNITVKYGSFLEIP----CE 147 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHHHTCTTTEEEEECCTTSCS----SC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC--CE--EEEEeCCHHHHH---HHHHHHHhcCCCcceEEEEcCcccCC----CC
Confidence 567889999999887777888998874 34 455564343331 34455444322122334455777653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC---CCC----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---DHP---------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---~~P---------------- 155 (214)
..+||.|+.+..-.-.. + ...+++.+..+|+|||.+.++-.. ..+
T Consensus 148 ~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (297)
T 2o57_A 148 DNSYDFIWSQDAFLHSP-------------D---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 211 (297)
T ss_dssp TTCEEEEEEESCGGGCS-------------C---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSC
T ss_pred CCCEeEEEecchhhhcC-------------C---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCC
Confidence 67899999885422110 1 356788889999999998776321 111
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+.-.+..+++++||.+.+..+..
T Consensus 212 ~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 212 GSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECH
T ss_pred CCHHHHHHHHHHCCCeEEEEEECc
Confidence 122235678889999998876544
No 63
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=97.36 E-value=0.0012 Score=54.32 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=85.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+-..+.+||-||=|.=.++..|++... .+ .|+.|..++..+ .+.+++. .....+...|+.++. +.
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~--v~~vD~s~~~~~---~a~~~~~----~~~~~~~~~d~~~~~----~~ 105 (253)
T 3g5l_A 41 PDFNQKTVLDLGCGFGWHCIYAAEHGA--KK--VLGIDLSERMLT---EAKRKTT----SPVVCYEQKAIEDIA----IE 105 (253)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTC--SE--EEEEESCHHHHH---HHHHHCC----CTTEEEEECCGGGCC----CC
T ss_pred hccCCCEEEEECCCCCHHHHHHHHcCC--CE--EEEEECCHHHHH---HHHHhhc----cCCeEEEEcchhhCC----CC
Confidence 344788999999777677777887632 24 455564333321 1332222 234455666777664 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------------CC----
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----------------DH---- 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----------------~~---- 154 (214)
..+||.|+.+....... -+..+++.+..+|++||.+.|+... +.
T Consensus 106 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIA----------------SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169 (253)
T ss_dssp TTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE
T ss_pred CCCeEEEEEchhhhhhh----------------hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEE
Confidence 57899999987432211 1346788889999999999887321 00
Q ss_pred ------------------C-----CCcccHhhHHHhcCCEEEEEecCCC
Q 041136 155 ------------------P-----YNQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 155 ------------------P-----y~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
+ ++.-.+..+.+++||.+.+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 170 PVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEP 218 (253)
T ss_dssp EECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred EeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence 0 0233477899999999998765443
No 64
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=97.36 E-value=0.0018 Score=52.01 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++... ++ |+.|..++..+ .+.++++... .++.+ ...|+.++. +...
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v--~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~~~~ 102 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF---EV--VGVDISEDMIR---KAREYAKSRE-SNVEF-IVGDARKLS----FEDK 102 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC---EE--EEEESCHHHHH---HHHHHHHHTT-CCCEE-EECCTTSCC----SCTT
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC---EE--EEEECCHHHHH---HHHHHHHhcC-CCceE-EECchhcCC----CCCC
Confidence 4478999999777677777887642 44 45564444432 3555554433 34444 445776653 3456
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+||.|+.+.| +... .-...+++.+..+|++||.+.+...
T Consensus 103 ~~D~v~~~~~~~~~~~----------------~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEP----------------LELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CEEEEEEESCGGGCCH----------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEEEcCchHhCCH----------------HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 8999999988 4321 1245678889999999999987743
No 65
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.33 E-value=0.0015 Score=52.13 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + .++ |+.|..++.. +..++.+...+...|+.++...+.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR-G--IEA--VGVDGDRTLV----------DAARAAGAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT-T--CEE--EEEESCHHHH----------HHHHHTCSSCEEECCHHHHHTTCSCCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC-C--CEE--EEEcCCHHHH----------HHHHHhcccccchhhHHhhcccccccCC
Confidence 34589999997766677778776 2 344 5556433332 2222224444555677776444334456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH---------------------- 154 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~---------------------- 154 (214)
+||.|+.++... .. + ...+++.+..+|++||.+.|+.....
T Consensus 116 ~fD~v~~~~~l~-~~----~------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (227)
T 3e8s_A 116 DYDLICANFALL-HQ----D------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGD 178 (227)
T ss_dssp CEEEEEEESCCC-SS----C------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSC
T ss_pred CccEEEECchhh-hh----h------------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccC
Confidence 799999998776 21 1 12567788899999999988743110
Q ss_pred --C-----CCcccHhhHHHhcCCEEEEEec
Q 041136 155 --P-----YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --P-----y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
+ ++.-.+..+.+++||.+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 179 WQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred cccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 0 1233467788999999988654
No 66
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.32 E-value=0.0013 Score=55.05 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||=|.=.++..|++. + ..+ .|+.|..++..+ .+.+++..........+...|+.++.- ....
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 132 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-G-IGE--YYGVDIAEVSIN---DARVRARNMKRRFKVFFRAQDSYGRHM---DLGK 132 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-T-CSE--EEEEESCHHHHH---HHHHHHHTSCCSSEEEEEESCTTTSCC---CCSS
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-C-CCE--EEEEECCHHHHH---HHHHHHHhcCCCccEEEEECCcccccc---CCCC
Confidence 57789999996655555557765 2 224 455664443331 244444322110113445567777631 1457
Q ss_pred cccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
.||.|+.++. |... .+..-+..+++.+..+|+|||.+.++..
T Consensus 133 ~fD~v~~~~~l~~~~-------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 133 EFDVISSQFSFHYAF-------------STSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CEEEEEEESCGGGGG-------------SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcCEEEECchhhhhc-------------CCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8999999864 3211 1233467789999999999999988754
No 67
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=97.32 E-value=0.0012 Score=53.45 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..|++. + .. .|+.|..+++.+ .+.+++.... .++. +...|+.++. +. ..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~--~~--~~~~D~s~~~~~---~a~~~~~~~~-~~~~-~~~~d~~~~~----~~-~~ 101 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-F--KN--TWAVDLSQEMLS---EAENKFRSQG-LKPR-LACQDISNLN----IN-RK 101 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-S--SE--EEEECSCHHHHH---HHHHHHHHTT-CCCE-EECCCGGGCC----CS-CC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-C--Cc--EEEEECCHHHHH---HHHHHHhhcC-CCeE-EEecccccCC----cc-CC
Confidence 6789999997776677778775 2 23 566675444432 3444443321 1344 3455777654 22 67
Q ss_pred ccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 98 FDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 98 FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
||.|+.++ +|+.. ..-+..+++.+..+|++||.+.++.
T Consensus 102 fD~v~~~~~~l~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 102 FDLITCCLDSTNYIID---------------SDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEEEEECTTGGGGCCS---------------HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ceEEEEcCccccccCC---------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999976 55532 2245678889999999999998754
No 68
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=97.32 E-value=0.0016 Score=52.93 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..|++.+. +.+ .|+.|..++..+ .+.+++ ...+...+...|+.++.. .
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~--v~~vD~s~~~~~---~a~~~~---~~~~~~~~~~~d~~~~~~----~- 107 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-EAT--FTLVDMSEKMLE---IAKNRF---RGNLKVKYIEADYSKYDF----E- 107 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-TCE--EEEEESCHHHHH---HHHHHT---CSCTTEEEEESCTTTCCC----C-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-CCe--EEEEECCHHHHH---HHHHhh---ccCCCEEEEeCchhccCC----C-
Confidence 45778999999777777777888873 334 455664333331 233332 223334455667777642 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.+.+-.-. ...-...+++.+..+|+|||.+.++-
T Consensus 108 ~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 108 EKYDMVVSALSIHHL--------------EDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp SCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEeCccccC--------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999754322 11223467788899999999997764
No 69
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.31 E-value=0.00089 Score=59.23 Aligned_cols=142 Identities=13% Similarity=0.008 Sum_probs=84.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.+||-+|=|.=.|+..+++. + . -+|+.|..+...+ .+.+|++.+.-.+ -..+..-|+.++.........
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~-g--a--~V~~VD~s~~al~---~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~ 224 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA-G--A--EVTHVDASKKAIG---WAKENQVLAGLEQAPIRWICEDAMKFIQREERRGS 224 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTC
T ss_pred CCCcEEEcccccCHHHHHHHHc-C--C--EEEEEECCHHHHH---HHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCC
Confidence 5679999986655566667763 2 2 5677786555442 4778887764333 134556677764211000146
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCc---ccH-hhHHHhcCCEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQ---WNV-MGLADKLGLVL 172 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~---W~i-~~lA~~~gl~l 172 (214)
+||.||.|.|..+.... .+. ......+..++..|..+|+++|.+.++.......+. .++ .+.+++.|..+
T Consensus 225 ~fD~Ii~dPP~~~~~~~-~~~-----~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 225 TYDIILTDPPKFGRGTH-GEV-----WQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CBSEEEECCCSEEECTT-CCE-----EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CceEEEECCccccCCch-HHH-----HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 79999999997654211 100 112445678899999999999997666443332221 223 33555778877
Q ss_pred E
Q 041136 173 K 173 (214)
Q Consensus 173 ~ 173 (214)
.
T Consensus 299 ~ 299 (332)
T 2igt_A 299 A 299 (332)
T ss_dssp E
T ss_pred E
Confidence 5
No 70
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=97.31 E-value=0.00057 Score=54.37 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||-||=|.=.++..|++.. ....|+.|..++..+ .+.+++......+...+...|+.++. +...+||.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~----~~~v~~~D~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS----DFSIRALDFSKHMNE---IALKNIADANLNDRIQIVQGDVHNIP----IEDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS----EEEEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECBTTBCS----SCTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcC----CCeEEEEECCHHHHH---HHHHHHHhccccCceEEEEcCHHHCC----CCcccccE
Confidence 99999977777787788872 355667775444432 35556555433233455667887764 45678999
Q ss_pred EEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 101 IIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|+.+....-.. -...+++.+..+|++||.+.|+
T Consensus 115 v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 115 IVSRGSVFFWE----------------DVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp EEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECchHhhcc----------------CHHHHHHHHHHhCCCCCEEEEE
Confidence 99987432211 1234778888999999999887
No 71
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=97.30 E-value=0.00095 Score=54.74 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++.. ...+ |+.|..+...+ .+.+++... ....+...|+.++. +.
T Consensus 90 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v--~~vD~s~~~~~---~a~~~~~~~---~~~~~~~~d~~~~~----~~ 155 (254)
T 1xtp_A 90 PGHGTSRALDCGAGIGRITKNLLTKL--YATT--DLLEPVKHMLE---EAKRELAGM---PVGKFILASMETAT----LP 155 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHH--CSEE--EEEESCHHHHH---HHHHHTTTS---SEEEEEESCGGGCC----CC
T ss_pred cccCCCEEEEECCCcCHHHHHHHHhh--cCEE--EEEeCCHHHHH---HHHHHhccC---CceEEEEccHHHCC----CC
Confidence 44578899999977766777788775 2234 45564333321 233333222 22334455777653 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--CC-----------CCcccH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--HP-----------YNQWNV 161 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--~P-----------y~~W~i 161 (214)
...||.|+.++.-.-. ...-+..+++.+..+|++||.+.|+-... .+ ++.-.+
T Consensus 156 ~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 1xtp_A 156 PNTYDLIVIQWTAIYL--------------TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp SSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred CCCeEEEEEcchhhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence 5689999998752211 11235678888999999999997774211 10 122347
Q ss_pred hhHHHhcCCEEEEEec
Q 041136 162 MGLADKLGLVLKEKVE 177 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~ 177 (214)
..+.+++||.+.+...
T Consensus 222 ~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHCCCEEEEeee
Confidence 7888999999887643
No 72
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=97.29 E-value=0.00055 Score=59.68 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.++||.||=|+=..++.|+++.+ ...|++.-+|. ++.+ -+.+++..+. ...+.++. -|+.+.-.
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~V~~VDid~--~vi~---~ar~~~~~~~~~~~~~~rv~~~~-~D~~~~l~-- 152 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDA--GVVS---FCRQYLPNHNAGSYDDPRFKLVI-DDGVNFVN-- 152 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTT-CCEEEEECSCT--THHH---HHHHHCHHHHSSCTTCTTCCEEC-SCSCC-----
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCC-CCEEEEEECCH--HHHH---HHHHhhhhcccccccCCceEEEE-ChHHHHHh--
Confidence 4568999999888888888998643 34566555544 3331 3556666553 22455543 46654322
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....+||.||.|.|..-.. ........||+.+..+|++||.+.+..
T Consensus 153 -~~~~~fDvIi~D~~~p~~~------------~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 153 -QTSQTFDVIISDCTDPIGP------------GESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp -CCCCCEEEEEECC----------------------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred -hcCCCccEEEECCCCccCc------------chhccHHHHHHHHHHhcCCCCEEEEec
Confidence 1246899999998864221 011123789999999999999987764
No 73
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=97.25 E-value=0.0011 Score=55.81 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||=|.=.++..|++. + ..+ |+.|..++..+ .+.++++...-....-+...|+.++.. +...+|
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~f 137 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER-G--HQV--ILCDLSAQMID---RAKQAAEAKGVSDNMQFIHCAAQDVAS---HLETPV 137 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHC-CCGGGEEEEESCGGGTGG---GCSSCE
T ss_pred CCEEEEeCCcchHHHHHHHHC-C--CEE--EEEECCHHHHH---HHHHHHHhcCCCcceEEEEcCHHHhhh---hcCCCc
Confidence 579999996666666668776 2 344 55564343331 244444332110124456668877653 345789
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-------------------C------
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-------------------D------ 153 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-------------------~------ 153 (214)
|.|+.+....-.. + ...+++.+..+|+|||.+.|+... +
T Consensus 138 D~v~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (285)
T 4htf_A 138 DLILFHAVLEWVA-------------D---PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKK 201 (285)
T ss_dssp EEEEEESCGGGCS-------------C---HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC--
T ss_pred eEEEECchhhccc-------------C---HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccccc
Confidence 9999986543221 0 145788899999999999876531 0
Q ss_pred ------CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 ------HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 ------~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+++.-.+..+.+++||.+.+...+.
T Consensus 202 ~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 202 RTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp --CCCSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred ccCCCCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence 12334468889999999998876653
No 74
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=97.25 E-value=0.0022 Score=53.15 Aligned_cols=135 Identities=13% Similarity=0.240 Sum_probs=82.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++... ..++.|..+++.+ .+.++++.....+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~---~a~~~~~~~~~~~-v~~~~~d~~~l~----~~ 100 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILK---VARAFIEGNGHQQ-VEYVQGDAEQMP----FT 100 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCC-CCC----SC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHH---HHHHHHHhcCCCc-eEEEEecHHhCC----CC
Confidence 446788999999666566666877642 4566775444432 3444443321112 334455777653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--C-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--D------------------- 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--~------------------- 153 (214)
...||.|+.++.-.-.. + ...+++.+..+|+|||.+.++-.. .
T Consensus 101 ~~~fD~V~~~~~l~~~~----d------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFP----N------------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSH 164 (260)
T ss_dssp TTCEEEEEEESCGGGCS----C------------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTC
T ss_pred CCCEEEEEEhhhhHhcC----C------------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccc
Confidence 67899999986432211 0 136788889999999999775211 1
Q ss_pred -CCCCcccHhhHHHhcCCEEEEEecC
Q 041136 154 -HPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 -~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
..++.-.+..+.+++||.+.....+
T Consensus 165 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 165 HRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 1123334667888999988765444
No 75
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.24 E-value=0.00085 Score=60.34 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred ccCC-CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCC
Q 041136 13 ISHY-TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRH 90 (214)
Q Consensus 13 ~~~~-~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~ 90 (214)
+..+ ..+.+||=+|=|.=.||+.+|+. + +..+ |+.|..++.. ..+.+|++.+.-.+ ...++.-||.+.-..
T Consensus 206 ~~~~~~~~~~VLDl~cGtG~~sl~la~~-g-a~~V--~~vD~s~~al---~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~ 278 (385)
T 2b78_A 206 LINGSAAGKTVLNLFSYTAAFSVAAAMG-G-AMAT--TSVDLAKRSR---ALSLAHFEANHLDMANHQLVVMDVFDYFKY 278 (385)
T ss_dssp HHHTTTBTCEEEEETCTTTHHHHHHHHT-T-BSEE--EEEESCTTHH---HHHHHHHHHTTCCCTTEEEEESCHHHHHHH
T ss_pred HHHHhcCCCeEEEEeeccCHHHHHHHHC-C-CCEE--EEEECCHHHH---HHHHHHHHHcCCCccceEEEECCHHHHHHH
Confidence 3344 67889999985555555557764 2 2244 4555433333 14777877654321 234555577652110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--CCcccHh-hHHHh
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--YNQWNVM-GLADK 167 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--y~~W~i~-~lA~~ 167 (214)
..-.+.+||.||.|.|-.+...+... .-.+.+..++..|..+|+|+|.+.++.+.... -..|++. ..|.+
T Consensus 279 ~~~~~~~fD~Ii~DPP~~~~~~~~~~-------~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~ 351 (385)
T 2b78_A 279 ARRHHLTYDIIIIDPPSFARNKKEVF-------SVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 351 (385)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCCCccEEEECCCCCCCChhhHH-------HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 00124579999999999753211111 12345667788899999999999888765442 1234444 45667
Q ss_pred cCCEEEEEecCCCCCCC
Q 041136 168 LGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 168 ~gl~l~~~~~F~~~~yP 184 (214)
.|..+.+ ..-.+.++|
T Consensus 352 ~g~~~~~-~~~~~~D~p 367 (385)
T 2b78_A 352 QKHTYLD-LQQLPSDFA 367 (385)
T ss_dssp CCCEEEE-EECCCTTSC
T ss_pred cCCcEEE-eCCCCCCCC
Confidence 7877444 333444555
No 76
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=97.24 E-value=0.00065 Score=55.85 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=82.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++.. ...+ |+.|..++..+ .+.+++..... ....+...|+..+. +...
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v--~~vD~s~~~~~---~a~~~~~~~~~-~~~~~~~~d~~~~~----~~~~ 145 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREV--DMVDITEDFLV---QAKTYLGEEGK-RVRNYFCCGLQDFT----PEPD 145 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEE--EEEESCHHHHH---HHHHHTGGGGG-GEEEEEECCGGGCC----CCSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEE--EEEeCCHHHHH---HHHHHhhhcCC-ceEEEEEcChhhcC----CCCC
Confidence 357899999977777777777765 2344 45564333331 24444333211 12335566777654 3356
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------C-----CCcccHhhH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------P-----YNQWNVMGL 164 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------P-----y~~W~i~~l 164 (214)
+||.|+.+..-.-. ....+..+++.+..+|++||.+.|+-.... . ++.-.+..+
T Consensus 146 ~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (241)
T 2ex4_A 146 SYDVIWIQWVIGHL--------------TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRI 211 (241)
T ss_dssp CEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHH
T ss_pred CEEEEEEcchhhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHH
Confidence 89999998432111 112357788999999999999977532111 0 123356778
Q ss_pred HHhcCCEEEEEecC
Q 041136 165 ADKLGLVLKEKVEF 178 (214)
Q Consensus 165 A~~~gl~l~~~~~F 178 (214)
.+++||.+.+....
T Consensus 212 l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 212 ICSAGLSLLAEERQ 225 (241)
T ss_dssp HHHTTCCEEEEEEC
T ss_pred HHHcCCeEEEeeec
Confidence 88999999886544
No 77
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=97.22 E-value=0.015 Score=49.14 Aligned_cols=138 Identities=7% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+.+++++||-+|=|.=.++..||+..++...|+|.=+.. ...+ .. ++..+. .++.. ..-||+.......+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~--~~l~---~l---~~~a~~r~nv~~-i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSP--RVVR---EL---LLVAQRRPNIFP-LLADARFPQSYKSV 143 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCH--HHHH---HH---HHHHHHCTTEEE-EECCTTCGGGTTTT
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcH--HHHH---HH---HHHhhhcCCeEE-EEcccccchhhhcc
Confidence 467899999999665556666888887555666654433 2111 01 111112 34444 44688876543222
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------CCC-cccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------PYN-QWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------Py~-~W~i~~lA~ 166 (214)
..+||+|+.|.|+.. + .++ +...+..+|++||.+.++++.+. |.. .=+++...+
T Consensus 144 -~~~~D~I~~d~a~~~-------~--------~~i---l~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~ 204 (232)
T 3id6_C 144 -VENVDVLYVDIAQPD-------Q--------TDI---AIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLE 204 (232)
T ss_dssp -CCCEEEEEECCCCTT-------H--------HHH---HHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHH
T ss_pred -ccceEEEEecCCChh-------H--------HHH---HHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHH
Confidence 357999999988611 0 111 23456778999999998875432 322 223445556
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
++||.+.+.....|
T Consensus 205 ~~gf~~~~~~~l~p 218 (232)
T 3id6_C 205 NSNFETIQIINLDP 218 (232)
T ss_dssp HTTEEEEEEEECTT
T ss_pred HCCCEEEEEeccCC
Confidence 77999988765543
No 78
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=97.21 E-value=0.0053 Score=53.73 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.+|+.|. ++..+ .+.+++....-.+..-+...|+.+ . +.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 246 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAP---HLRGTLVEL-AGPAE---RARRRFADAGLADRVTVAEGDFFK--P---LP 246 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTTS--C---CS
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCC---CCEEEEEeC-HHHHH---HHHHHHHhcCCCCceEEEeCCCCC--c---CC
Confidence 467789999999777778888998873 345667777 55442 466666543222223344556653 1 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec-----C-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR-----D----------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~-----~----------------- 152 (214)
..||.|+.+..-.-.. ..-...+++.+..+|++||.+.|.-. +
T Consensus 247 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 311 (374)
T 1qzz_A 247 -VTADVVLLSFVLLNWS--------------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTF 311 (374)
T ss_dssp -CCEEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHH
T ss_pred -CCCCEEEEeccccCCC--------------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHh
Confidence 2399999987543221 11234677788899999999876532 1
Q ss_pred --CCCCCcccHhhHHHhcCCEEEEEecCCCCCCC
Q 041136 153 --DHPYNQWNVMGLADKLGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 153 --~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~yP 184 (214)
+..++.=.+..+.+++||...+..+.....+|
T Consensus 312 ~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~ 345 (374)
T 1qzz_A 312 MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLP 345 (374)
T ss_dssp HSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCS
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEECCCCccc
Confidence 11123334667888899999887776543333
No 79
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=97.20 E-value=0.0013 Score=54.40 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=82.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|+.... +. ..|+.|..++..+ .+.+|++.+.-.++.++. -|+.++...+. ...
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~-~~~ 140 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP-HL--HVTIVDSLNKRIT---FLEKLSEALQLENTTFCH-DRAETFGQRKD-VRE 140 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-TC--EEEEEESCHHHHH---HHHHHHHHHTCSSEEEEE-SCHHHHTTCTT-TTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC-CC--EEEEEeCCHHHHH---HHHHHHHHcCCCCEEEEe-ccHHHhccccc-ccC
Confidence 5778999999554444555666442 23 4566675554432 466777766433455544 47776642111 146
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC--cccHhhHHHhcCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN--QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~--~W~i~~lA~~~gl~l~~ 174 (214)
+||.|+.+.. . -+..+++.+..+|++||.+.+.. |.... .-.+....+..|+.+.+
T Consensus 141 ~fD~V~~~~~--~------------------~~~~~l~~~~~~LkpgG~l~~~~--g~~~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 141 SYDIVTARAV--A------------------RLSVLSELCLPLVKKNGLFVALK--AASAEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp CEEEEEEECC--S------------------CHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred CccEEEEecc--C------------------CHHHHHHHHHHhcCCCCEEEEEe--CCCchHHHHHHHHHHHHcCCeEeE
Confidence 7999998651 1 14577888999999999997762 22211 22345566778998888
Q ss_pred EecCC
Q 041136 175 KVEFL 179 (214)
Q Consensus 175 ~~~F~ 179 (214)
...|.
T Consensus 199 ~~~~~ 203 (240)
T 1xdz_A 199 IHSFK 203 (240)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76664
No 80
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=97.20 E-value=0.0014 Score=52.29 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++.+||-+|-|.=.++..|++.++ .. ..|+.|..++..+ .+..|+..+...+ ..+...|+.++. ...+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~-v~~~~~d~~~~~-----~~~~ 132 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-EA--HFTLLDSLGKRVR---FLRQVQHELKLEN-IEPVQSRVEEFP-----SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TS--EEEEEESCHHHHH---HHHHHHHHTTCSS-EEEEECCTTTSC-----CCSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-CC--EEEEEeCCHHHHH---HHHHHHHHcCCCC-eEEEecchhhCC-----ccCC
Confidence 478999999776666777888763 23 4556665444331 3666666554333 445566777653 2357
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
||.|+.|.-+ -+..++..+..+|++||.+.+..-. ...-.+..+.. |+.+.+..+
T Consensus 133 ~D~i~~~~~~--------------------~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~--g~~~~~~~~ 187 (207)
T 1jsx_A 133 FDGVISRAFA--------------------SLNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPE--EYQVESVVK 187 (207)
T ss_dssp EEEEECSCSS--------------------SHHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCT--TEEEEEEEE
T ss_pred cCEEEEeccC--------------------CHHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhc--CCceeeeee
Confidence 9999986310 0347788899999999999887322 23334444443 888877665
Q ss_pred CC
Q 041136 178 FL 179 (214)
Q Consensus 178 F~ 179 (214)
|.
T Consensus 188 ~~ 189 (207)
T 1jsx_A 188 LQ 189 (207)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 81
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.15 E-value=0.0065 Score=53.33 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+.+||=+|=|.=+++..+|...++...++ +.|..+...+ .|..|++...-. ...+..-|++++.. .
T Consensus 200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~--g~Di~~~~i~---~a~~n~~~~g~~-~i~~~~~D~~~~~~----~ 269 (354)
T 3tma_A 200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVY--AGDLDEKRLG---LAREAALASGLS-WIRFLRADARHLPR----F 269 (354)
T ss_dssp TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEE--EEESCHHHHH---HHHHHHHHTTCT-TCEEEECCGGGGGG----T
T ss_pred CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEE--EEECCHHHHH---HHHHHHHHcCCC-ceEEEeCChhhCcc----c
Confidence 456788999887555455555776663334554 5564444432 467776654322 24455668888753 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.||.|.|. |...+ + ......+...+++.+.++|++||.+.+... +...+..+.+ .|+...+
T Consensus 270 ~~~~D~Ii~npPy-g~r~~--~-----~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-----~~~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 270 FPEVDRILANPPH-GLRLG--R-----KEGLFHLYWDFLRGALALLPPGGRVALLTL-----RPALLKRALP-PGFALRH 335 (354)
T ss_dssp CCCCSEEEECCCS-CC-----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-----CHHHHHHHCC-TTEEEEE
T ss_pred cCCCCEEEECCCC-cCccC--C-----cccHHHHHHHHHHHHHHhcCCCcEEEEEeC-----CHHHHHHHhh-cCcEEEE
Confidence 2458999999996 32111 0 022456778999999999999999977632 2222344455 8888877
Q ss_pred EecC
Q 041136 175 KVEF 178 (214)
Q Consensus 175 ~~~F 178 (214)
..+.
T Consensus 336 ~~~l 339 (354)
T 3tma_A 336 ARVV 339 (354)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6544
No 82
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=97.14 E-value=0.0043 Score=55.22 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=86.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-------CCEEEEccccccCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-------GCLVLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-------g~~Vl~~VDAt~L~~ 89 (214)
.++.+||-||=|.=.++..|++.+++...+ |+.|..++..+ .+.++++.+... ....+..-|+.++..
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v--~gvD~s~~~l~---~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKV--IGVDMLDNQLE---VARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEE--EEEECCHHHHH---HHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEE--EEEECCHHHHH---HHHHHHHHhhhhcccccCCCceEEEEccHHHhhh
Confidence 567899999977767777799988654444 55564333332 366666655311 133444558877632
Q ss_pred C--CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cCCC------------
Q 041136 90 H--PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RDDH------------ 154 (214)
Q Consensus 90 ~--~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~~~------------ 154 (214)
. ..+...+||.|+.|....-.. + ...+++.+..+|+|||.+.++- ....
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~-------------d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 220 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST-------------N---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL 220 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS-------------C---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH
T ss_pred cccCCCCCCCEEEEEEccchhcCC-------------C---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH
Confidence 1 135567899999997654321 0 2467888999999999997752 2111
Q ss_pred -------CCCcccHhhHHHhcCCEEEE
Q 041136 155 -------PYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 155 -------Py~~W~i~~lA~~~gl~l~~ 174 (214)
++..-.+..+..++||...+
T Consensus 221 ~~~~~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 221 YGECLGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp HHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred hhcccccCCCHHHHHHHHHHCCCceEE
Confidence 12234467788899997554
No 83
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=97.14 E-value=0.0065 Score=52.53 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
++++..+||-||=|.=.++..|++.+. ++.+|.+|. +++.+ .+.+++....-.+-.-+..-|+. ...+
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~--~~~p--- 233 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHE---DLSGTVLDL-QGPAS---AAHRRFLDTGLSGRAQVVVGSFF--DPLP--- 233 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTT--SCCC---
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCC---CCeEEEecC-HHHHH---HHHHhhhhcCcCcCeEEecCCCC--CCCC---
Confidence 456778999999777778888999874 345677788 55442 45555554321122334444554 1211
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---C----------------CCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---D----------------DHP 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~----------------~~P 155 (214)
. .||.|+...--.-.. .+-...+++.+..+|+|||.+.|.-. + +..
T Consensus 234 ~-~~D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 234 A-GAGGYVLSAVLHDWD--------------DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKE 298 (332)
T ss_dssp C-SCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCC
T ss_pred C-CCcEEEEehhhccCC--------------HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCC
Confidence 1 699999876543221 12245567778889999999977521 1 112
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.=++..+.+++||...+..+..
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~~ 322 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPIS 322 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECS
T ss_pred CCHHHHHHHHHHCCCEEEEEEECC
Confidence 333446678888999998876553
No 84
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=97.13 E-value=0.0055 Score=52.60 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=83.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+...+||-||=|.=.++..|++.+. . +-.|+.|.. .+.+ .+.+++....-.+..-+...|+.+.. +..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~~-~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~- 231 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP-N--AEIFGVDWA-SVLE---VAKENARIQGVASRYHTIAGSAFEVD----YGN- 231 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT-T--CEEEEEECH-HHHH---HHHHHHHHHTCGGGEEEEESCTTTSC----CCS-
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-C--CeEEEEecH-HHHH---HHHHHHHhcCCCcceEEEecccccCC----CCC-
Confidence 7789999999777777888998873 2 345566655 4442 46666655432222334445666542 222
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------------------------ 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------------------------ 152 (214)
.||.|+.+..-.... ..-...+++.+..+|++||.+.|.-..
T Consensus 232 ~~D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFD--------------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPN 297 (335)
T ss_dssp CEEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSS
T ss_pred CCcEEEEcchhccCC--------------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCC
Confidence 399999965433221 122446677888999999998765221
Q ss_pred CCCCCcccHhhHHHhcCCEEEEEecC
Q 041136 153 DHPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 153 ~~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+..++.-++..+.+++||...+..+.
T Consensus 298 ~~~~t~~~~~~ll~~aGf~~~~~~~~ 323 (335)
T 2r3s_A 298 GDAYTFAEYESMFSNAGFSHSQLHSL 323 (335)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcCCHHHHHHHHHHCCCCeeeEEEC
Confidence 11122334567788899998886554
No 85
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.13 E-value=0.0039 Score=55.39 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.|+.++++.++...++++.-+|....- .| .++. ++.-|+.... ...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~-----~a---------~~~~-~~~~D~~~~~-----~~~ 97 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LP---------PWAE-GILADFLLWE-----PGE 97 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CC---------TTEE-EEESCGGGCC-----CSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH-----hC---------CCCc-EEeCChhhcC-----ccC
Confidence 45679999998888888889988754457777666654321 11 2333 3445666542 236
Q ss_pred cccEEEEcCCCCCCCCC------CCcccHHHHHH-------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCC--CcccH
Q 041136 97 KFDVIIFNFPHAGHSPP------LSEQDTNLIKR-------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY--NQWNV 161 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~------~~~~~~~~i~~-------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py--~~W~i 161 (214)
+||.||.|.|..+.... ..+..+...+. ..++...|++.|..+|+++|.+.+.+.++--. ..-.+
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~l 177 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL 177 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHH
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHH
Confidence 79999999999865321 11111111100 01256689999999999999997775442100 12246
Q ss_pred hhHHHhcCC
Q 041136 162 MGLADKLGL 170 (214)
Q Consensus 162 ~~lA~~~gl 170 (214)
.+...+.++
T Consensus 178 r~~l~~~~~ 186 (421)
T 2ih2_A 178 REFLAREGK 186 (421)
T ss_dssp HHHHHHHSE
T ss_pred HHHHHhcCC
Confidence 666666776
No 86
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.12 E-value=0.0026 Score=52.27 Aligned_cols=137 Identities=17% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ ..+ |+.|..++..+ .+.++++...-.....+...|+.++. +
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v--~gvD~s~~~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~- 100 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITG--TGIDMSSLFTA---QAKRRAEELGVSERVHFIHNDAAGYV----A- 100 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC--CEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCCTTCC----C-
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcC--CeE--EEEeCCHHHHH---HHHHHHHhcCCCcceEEEECChHhCC----c-
Confidence 456788999999777777777998874 344 66675444432 35555544321112344556777653 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--CCC-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--DHP----------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--~~P----------------- 155 (214)
...||.|+.+..-.-.. -...+++.+..+|+|||.+.|+-.. ..|
T Consensus 101 ~~~fD~V~~~~~~~~~~----------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAG----------------GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDF 164 (256)
T ss_dssp SSCEEEEEEESCGGGTS----------------SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred CCCCCEEEECCChHhcC----------------CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhccccccc
Confidence 57899999854321110 0245677789999999999876321 111
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+..++||...+....+
T Consensus 165 ~~~~~~~~~l~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 165 LTLPGLVGAFDDLGYDVVEMVLAD 188 (256)
T ss_dssp CCHHHHHHHHHTTTBCCCEEEECC
T ss_pred CCHHHHHHHHHHCCCeeEEEEeCC
Confidence 122346778889999887765433
No 87
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=97.11 E-value=0.015 Score=48.21 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=82.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-----HHHHhcCccHHHHHHHHHh-CCCEEEEccc---cc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-----RTLKTKHWTSQAHLQSLWS-RGCLVLHGVN---VH 85 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-----~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VD---At 85 (214)
+..++.+||-||=|.=.++..|++.+++...++++-.+.. +.+. .+.+++..... .++.+ ...| +.
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~----~a~~~~~~~~~~~~v~~-~~~d~~~~~ 114 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG----QAWNHLLAGPLGDRLTV-HFNTNLSDD 114 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHH----HHHHHHHTSTTGGGEEE-ECSCCTTTC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHH----HHHHHHHhcCCCCceEE-EECChhhhc
Confidence 4567889999997777777779988864445655554432 1221 24444432211 12333 3334 22
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----------
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------- 154 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------- 154 (214)
.+ .+...+||.|+.+.+-.-... . ..+++.++.++++||.+.++-....
T Consensus 115 ~~----~~~~~~fD~v~~~~~l~~~~~-------------~---~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~ 174 (275)
T 3bkx_A 115 LG----PIADQHFDRVVLAHSLWYFAS-------------A---NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQ 174 (275)
T ss_dssp CG----GGTTCCCSEEEEESCGGGSSC-------------H---HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHH
T ss_pred cC----CCCCCCEEEEEEccchhhCCC-------------H---HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHH
Confidence 22 244578999999877432210 1 1256667788888999877522110
Q ss_pred ---------------C------CCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 ---------------P------YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 ---------------P------y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+ ++.-.+..+++++||.+.+...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 175 AAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp HHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred HHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 1 112256778889999999987773
No 88
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.10 E-value=0.0014 Score=53.15 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-----HhCCCEEEEccccccCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-----WSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----~~~g~~Vl~~VDAt~L~~~ 90 (214)
..++.+||-||-|.=.++..|++..+....+++ .|..+...+ .+.+|+..+ ...++. +...|++...
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-- 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVD---DSVNNVRKDDPTLLSSGRVQ-LVVGDGRMGY-- 146 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHH---HHHHHHHHHCTHHHHTSSEE-EEESCGGGCC--
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEE--EeCCHHHHH---HHHHHHHhhcccccCCCcEE-EEECCcccCc--
Confidence 457889999997776777778888764345554 554444332 355666553 222344 4445776432
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.....||+|+.+.|.... +..+..+|++||.+.++.....+
T Consensus 147 --~~~~~fD~i~~~~~~~~~----------------------~~~~~~~LkpgG~lv~~~~~~~~ 187 (226)
T 1i1n_A 147 --AEEAPYDAIHVGAAAPVV----------------------PQALIDQLKPGGRLILPVGPAGG 187 (226)
T ss_dssp --GGGCCEEEEEECSBBSSC----------------------CHHHHHTEEEEEEEEEEESCTTS
T ss_pred --ccCCCcCEEEECCchHHH----------------------HHHHHHhcCCCcEEEEEEecCCC
Confidence 234679999999876321 13467899999999999876544
No 89
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=97.08 E-value=0.00067 Score=57.77 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||-||=|.=.++..|++. + .++ |+.|..+++.+ .+.+++..... ....-+..-|+.++. + ..
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~~~v~~~~~d~~~~~----~-~~ 149 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL-G--WEV--TALELSTSVLA---AFRKRLAEAPADVRDRCTLVQGDMSAFA----L-DK 149 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT-T--CCE--EEEESCHHHHH---HHHHHHHTSCHHHHTTEEEEECBTTBCC----C-SC
T ss_pred CCcEEEEeccCCHHHHHHHHc-C--CeE--EEEECCHHHHH---HHHHHHhhcccccccceEEEeCchhcCC----c-CC
Confidence 449999996666667668776 2 345 45564333331 24444432210 022445566887764 2 57
Q ss_pred cccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
.||.||+.+ -|.- ..+.+..+++.+..+|+|||.+.|+..
T Consensus 150 ~fD~v~~~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 150 RFGTVVISSGSINEL---------------DEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp CEEEEEECHHHHTTS---------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEECCcccccC---------------CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 899998642 2221 233567788889999999999988754
No 90
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.00065 Score=57.98 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=71.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.....+++||-+|=|.=+|+..||+..+ +..+ ++.|..++..+ .+.+|++...-.++ .++.-|+.++ ..
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V--~~vD~s~~av~---~a~~n~~~n~l~~~-~~~~~d~~~~-~~--- 183 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK-PKLV--YAIEKNPTAYH---YLCENIKLNKLNNV-IPILADNRDV-EL--- 183 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEE--EEEECCHHHHH---HHHHHHHHTTCSSE-EEEESCGGGC-CC---
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCCE-EEEECChHHc-Cc---
Confidence 3467788999998666667777888764 3344 55565444432 47777766543344 4677799887 32
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+||.||.|+|. +. ..++..+..+|+++|.++++-.
T Consensus 184 -~~~~D~Vi~d~p~-~~-------------------~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 184 -KDVADRVIMGYVH-KT-------------------HKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -TTCEEEEEECCCS-SG-------------------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred -cCCceEEEECCcc-cH-------------------HHHHHHHHHHcCCCCEEEEEEc
Confidence 5679999999996 21 1245567788999999987744
No 91
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=97.06 E-value=0.0035 Score=52.49 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-H-hCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-W-SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~-~~g~~Vl~~VDAt~L~~~~~ 92 (214)
......+||-+|=|.=+++.+|++.+++...++ ++|..++..+ .+.+|++.. . ......+...|+.++.
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~g~~~~~v~~~~~d~~~~~---- 166 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVI--SYEQRADHAE---HARRNVSGCYGQPPDNWRLVVSDLADSE---- 166 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE--EECSCHHHHH---HHHHHHHHHHTSCCTTEEEECSCGGGCC----
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEE--EEeCCHHHHH---HHHHHHHHhcCCCCCcEEEEECchHhcC----
Confidence 456788999999887788888999876544554 5564444332 466676654 2 1123444556777652
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.|.|+.- .++..+..+|+++|.+.+..
T Consensus 167 ~~~~~~D~v~~~~~~~~---------------------~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 167 LPDGSVDRAVLDMLAPW---------------------EVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp CCTTCEEEEEEESSCGG---------------------GGHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEECCcCHH---------------------HHHHHHHHhCCCCCEEEEEe
Confidence 34567999999877321 35677889999999998874
No 92
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.05 E-value=0.0011 Score=51.52 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
+..++.+||-+|=|.=.++..|++.. ..+++ .|..++..+ .+.+|++.........+...|+.+ +..
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~--~D~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~~---- 97 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYA--IDRNPEAIS---TTEMNLQRHGLGDNVTLMEGDAPEALCK---- 97 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEE--EESCHHHHH---HHHHHHHHTTCCTTEEEEESCHHHHHTT----
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEE--EECCHHHHH---HHHHHHHHcCCCcceEEEecCHHHhccc----
Confidence 45678899999977767777777765 34554 454333331 355566554321223344556665 221
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
...||.|+.+.|-. -+..+++.+..+|+++|.+.+.... +...+.+..+.++.|+.+
T Consensus 98 -~~~~D~v~~~~~~~-------------------~~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 98 -IPDIDIAVVGGSGG-------------------ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFDV 154 (192)
T ss_dssp -SCCEEEEEESCCTT-------------------CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCCC
T ss_pred -CCCCCEEEECCchH-------------------HHHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCce
Confidence 14799999986530 1256788899999999999887443 235667778888888844
No 93
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=97.05 E-value=0.016 Score=50.60 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++-.|++|. +++.+ .+.++++...-.+..-+..-|+.++. +.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~ 255 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNL-PGAID---LVNENAAEKGVADRMRGIAVDIYKES----YP 255 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCT---TCEEEEEEC-GGGHH---HHHHHHHHTTCTTTEEEEECCTTTSC----CC
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCC---CCeEEEEec-HHHHH---HHHHHHHhcCCCCCEEEEeCccccCC----CC
Confidence 567889999999777777777998874 345667787 54442 45556554322232444555776642 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cC--------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RD--------------------D 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~--------------------~ 153 (214)
. +|.|+.+..-... ..+-...+++.+..+|+|||.+.|.- .. +
T Consensus 256 ~--~D~v~~~~vlh~~--------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g 319 (359)
T 1x19_A 256 E--ADAVLFCRILYSA--------------NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP 319 (359)
T ss_dssp C--CSEEEEESCGGGS--------------CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSS
T ss_pred C--CCEEEEechhccC--------------CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCC
Confidence 2 3999997664332 12345677888999999999986542 11 2
Q ss_pred CC----CCcccHhhHHHhcCCEEEEEecC
Q 041136 154 HP----YNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 ~P----y~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.. ++.=++.++.+++||...+..+.
T Consensus 320 ~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 320 FSVLGFKEQARYKEILESLGYKDVTMVRK 348 (359)
T ss_dssp CCCCCCCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred CcccCCCCHHHHHHHHHHCCCceEEEEec
Confidence 11 34445667888889988776554
No 94
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.03 E-value=0.00035 Score=54.61 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+.+||-+|=|.=.++..+++. + ...+++ .|..++..+ .+..|++...-.+...++.-|+.+........
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~--vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (187)
T 2fhp_A 41 PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSIC--IEKNFAALK---VIKENIAITKEPEKFEVRKMDANRALEQFYEE 113 (187)
T ss_dssp SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEE--EESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEE--EECCHHHHH---HHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence 4567889999985555555556663 2 234554 554343332 46667766532122344556776532100012
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+.|.|..-.. ...++... .+..+|+++|.+.+......
T Consensus 114 ~~~fD~i~~~~~~~~~~-------------~~~~~~~l--~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQE-------------IVSQLEKM--LERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp TCCEEEEEECCCGGGCC-------------HHHHHHHH--HHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCEEEECCCCCchh-------------HHHHHHHH--HHhcccCCCCEEEEEeCCcc
Confidence 46799999999943110 12222222 24788999999988866544
No 95
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=97.03 E-value=0.0077 Score=53.26 Aligned_cols=136 Identities=12% Similarity=0.137 Sum_probs=85.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++..|.+|. +++.+ .+.+++....-.+-.-+..-|+. .. +.
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~l~~~v~~~~~d~~--~~---~p 266 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFP---GLRGTLLER-PPVAE---EARELLTGRGLADRCEILPGDFF--ET---IP 266 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTT--TC---CC
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCC---CCeEEEEcC-HHHHH---HHHHhhhhcCcCCceEEeccCCC--CC---CC
Confidence 567789999999766677778999874 345677787 54442 45555554321222444455655 11 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--C-------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--D-------------------D 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~-------------------~ 153 (214)
. .||.|+...--.-.. ..-...+++.+..+|+|||.+.|.-. . +
T Consensus 267 ~-~~D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g 331 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWD--------------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGG 331 (369)
T ss_dssp S-SCSEEEEESCGGGSC--------------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSC
T ss_pred C-CceEEEhhhhhccCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCC
Confidence 2 699999876543321 12234567778899999999876421 1 1
Q ss_pred CCCCcccHhhHHHhcCCEEEEEec
Q 041136 154 HPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 154 ~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
..++.-++..+.+++||...+..+
T Consensus 332 ~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 332 AERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp CCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeEEEEEE
Confidence 123333466788889999988655
No 96
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=97.02 E-value=0.0041 Score=50.66 Aligned_cols=136 Identities=17% Similarity=0.109 Sum_probs=83.9
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-||=|.=.++..|++. ..-.|+.|..++..+ .+.+++.......-.-+...|++++. ...+||
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~-----~~~v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD 134 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASP-----ERFVVGLDISESALA---KANETYGSSPKAEYFSFVKEDVFTWR-----PTELFD 134 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBT-----TEEEEEECSCHHHHH---HHHHHHTTSGGGGGEEEECCCTTTCC-----CSSCEE
T ss_pred CCEEEeCCCCCHHHHHHHhC-----CCeEEEEECCHHHHH---HHHHHhhccCCCcceEEEECchhcCC-----CCCCee
Confidence 59999996665666667652 234667775444432 34444433211122455666777754 234899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------CCCC--CcccHhhHHHhcCCE
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------DHPY--NQWNVMGLADKLGLV 171 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------~~Py--~~W~i~~lA~~~gl~ 171 (214)
.|+.+....-.. .+....+++.+..+|++||.+.+.... +.|+ +.-.+..+.+.+||.
T Consensus 135 ~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 200 (235)
T 3lcc_A 135 LIFDYVFFCAIE--------------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFK 200 (235)
T ss_dssp EEEEESSTTTSC--------------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEE
T ss_pred EEEEChhhhcCC--------------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCe
Confidence 999876543321 113456788889999999998775432 2332 233577788899999
Q ss_pred EEEEecCCCCC
Q 041136 172 LKEKVEFLKQD 182 (214)
Q Consensus 172 l~~~~~F~~~~ 182 (214)
..+........
T Consensus 201 ~~~~~~~~~~~ 211 (235)
T 3lcc_A 201 AVSVEENPHAI 211 (235)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEecCCcc
Confidence 98876665543
No 97
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=97.01 E-value=0.011 Score=48.47 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=77.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++..+ ... .++.|..++..+ ...+..+. ..++..+ .-|++.+.....+.
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~--V~gvD~s~~~l~---~~~~~a~~--~~~v~~~-~~d~~~~~~~~~~~ 124 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVD-EGI--IYAVEYSAKPFE---KLLELVRE--RNNIIPL-LFDASKPWKYSGIV 124 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTT-TSE--EEEECCCHHHHH---HHHHHHHH--CSSEEEE-CSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcC-CCE--EEEEECCHHHHH---HHHHHHhc--CCCeEEE-EcCCCCchhhcccc
Confidence 456788999999555445666888775 334 455664443221 11111221 1244443 34787753322233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---CCcccHh----hHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP---YNQWNVM----GLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P---y~~W~i~----~lA~~ 167 (214)
.+||.|+.|.++.- ....+++.+..+|+|||.+.+++..+.. .....+. +..++
T Consensus 125 -~~fD~V~~~~~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (210)
T 1nt2_A 125 -EKVDLIYQDIAQKN------------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG 185 (210)
T ss_dssp -CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred -cceeEEEEeccChh------------------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHh
Confidence 68999999964420 1234677889999999999888644211 1112221 11345
Q ss_pred cCCEEEEEecCC
Q 041136 168 LGLVLKEKVEFL 179 (214)
Q Consensus 168 ~gl~l~~~~~F~ 179 (214)
+ |.+.+.....
T Consensus 186 ~-f~~~~~~~~~ 196 (210)
T 1nt2_A 186 D-FKIVKHGSLM 196 (210)
T ss_dssp T-SEEEEEEECT
T ss_pred h-cEEeeeecCC
Confidence 5 9888876654
No 98
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.01 E-value=0.00084 Score=60.16 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=87.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-+|=|.=+|+..+|+. + ...+++ .|..++.. ..+.+|++.+.-.+...+..-|+.++.....-...+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~--vD~s~~~l---~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~ 289 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIG--IDKSPRAI---ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEK 289 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-T-CSEEEE--EESCHHHH---HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEecCCCCHHHHHHHHC-C-CCEEEE--EeCCHHHH---HHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCC
Confidence 7889999986666667667775 3 234554 55433333 146777765432112334455776542110002467
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhcCCEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKLGLVLKE 174 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~gl~l~~ 174 (214)
||.||.|.|..+... . .+.........++..+..+|+++|.+.++.|..... +.| + +...+...|..+.-
T Consensus 290 fD~Vi~dpP~~~~~~----~---~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 362 (396)
T 2as0_A 290 FDIVVLDPPAFVQHE----K---DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKM 362 (396)
T ss_dssp EEEEEECCCCSCSSG----G---GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCCH----H---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 999999999877421 1 133445678889999999999999998887765532 222 2 33466667765543
No 99
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=96.99 E-value=0.0032 Score=48.60 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
.-....+||-||=|.=.++..|++.++ ....++.|..++..+ .+.+|++.+.... .+.+.-|+.. +. .
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~---~~~v~~vD~~~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~~----~ 90 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTP---QTTAVCFEISEERRE---RILSNAINLGVSD-RIAVQQGAPRAFD----D 90 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSS---SEEEEEECSCHHHHH---HHHHHHHTTTCTT-SEEEECCTTGGGG----G
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCC---CCeEEEEeCCHHHHH---HHHHHHHHhCCCC-CEEEecchHhhhh----c
Confidence 345678999999887777777888763 344566775554432 3566665443221 2244456543 11 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.+++..- ..+++.+..+|+++|.+.++.... .+...+..+.++.|+.+.
T Consensus 91 ~~~~~D~i~~~~~~~~--------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA--------------------PGVFAAAWKRLPVGGRLVANAVTV--ESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp CCSCCSEEEECC-TTC--------------------TTHHHHHHHTCCTTCEEEEEECSH--HHHHHHHHHHHHHCCEEE
T ss_pred cCCCCCEEEECCcccH--------------------HHHHHHHHHhcCCCCEEEEEeecc--ccHHHHHHHHHHcCCeeE
Confidence 1267999998776421 446677889999999998774331 133345566667777766
Q ss_pred EE
Q 041136 174 EK 175 (214)
Q Consensus 174 ~~ 175 (214)
+.
T Consensus 149 ~~ 150 (178)
T 3hm2_A 149 SF 150 (178)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 100
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.99 E-value=0.00049 Score=59.73 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccC-CCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTM-DRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L-~~~~ 91 (214)
....+||.||=|+=.++..|+++.+ ..++++.-+|. ++.+ -+.+|+..+. ...+.++.+ |+.+. ..
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~~~---~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~-- 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG--LVIE---AARKYLKQTSCGFDDPRAEIVIA-NGAEYVRK-- 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHGGG--
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh--
Confidence 3458999999888888888887653 34565554443 3331 3555665542 234555544 66652 22
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.||.|.|+.+... ........|++.+..+|++||.+.+...
T Consensus 160 --~~~~fD~Ii~d~~~~~~~~-----------~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 160 --FKNEFDVIIIDSTDPTAGQ-----------GGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp --CSSCEEEEEEEC---------------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred --CCCCceEEEEcCCCcccCc-----------hhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 2467999999988642110 0111236789999999999999988743
No 101
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=96.98 E-value=0.0066 Score=48.60 Aligned_cols=128 Identities=11% Similarity=0.159 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + . -.|+.|..++..+ .+.+++. .++. +...|+.++. +. .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~-~--~--~v~~vD~s~~~~~---~a~~~~~----~~~~-~~~~d~~~~~----~~-~ 105 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA-G--R--TVYGIEPSREMRM---IAKEKLP----KEFS-ITEGDFLSFE----VP-T 105 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHSC----TTCC-EESCCSSSCC----CC-S
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC-C--C--eEEEEeCCHHHHH---HHHHhCC----CceE-EEeCChhhcC----CC-C
Confidence 36789999997777777778876 2 2 4556675444331 2333222 2343 4456777764 23 7
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--------------------- 155 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--------------------- 155 (214)
+||.|+.+..-.-.. ..-...+++.+..+|++||.+.|+...-.+
T Consensus 106 ~fD~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (220)
T 3hnr_A 106 SIDTIVSTYAFHHLT--------------DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAN 171 (220)
T ss_dssp CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CeEEEEECcchhcCC--------------hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchh
Confidence 899999986432211 111245778889999999999887321000
Q ss_pred -------CCcccHhhHHHhcCCEEEEEe
Q 041136 156 -------YNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 156 -------y~~W~i~~lA~~~gl~l~~~~ 176 (214)
++.-.+..+.+++||.+....
T Consensus 172 ~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 172 DLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 122346778889999887653
No 102
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=96.97 E-value=0.0022 Score=51.81 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=81.2
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.+..+..+||-||=|.=.++..|++.. .+++ +.|..++..+ .+.++... ++.+ ...|+.++
T Consensus 37 l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~--gvD~s~~~~~---~a~~~~~~----~v~~-~~~d~~~~----- 98 (250)
T 2p7i_A 37 FTPFFRPGNLLELGSFKGDFTSRLQEHF---NDIT--CVEASEEAIS---HAQGRLKD----GITY-IHSRFEDA----- 98 (250)
T ss_dssp HGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEE--EEESCHHHHH---HHHHHSCS----CEEE-EESCGGGC-----
T ss_pred HHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEE--EEeCCHHHHH---HHHHhhhC----CeEE-EEccHHHc-----
Confidence 4456678899999966656666677653 2454 5564333321 12222211 4444 34577766
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHH-hccCCCCEEEEEecCCC-----------------
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGR-EMLGEGGEVHVTLRDDH----------------- 154 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~-~lL~~~G~i~VTl~~~~----------------- 154 (214)
+...+||.|+.++--.-.. + ...+++.+. .+|+|||.+.|+..+..
T Consensus 99 ~~~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (250)
T 2p7i_A 99 QLPRRYDNIVLTHVLEHID-------------D---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS 162 (250)
T ss_dssp CCSSCEEEEEEESCGGGCS-------------S---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT
T ss_pred CcCCcccEEEEhhHHHhhc-------------C---HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccch
Confidence 2356799999886321110 1 146788889 99999999988763311
Q ss_pred -------------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 -------------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 -------------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+++.-.+..+.+++||.+.+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 163 AVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 199 (250)
T ss_dssp CCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred hcccccccccccccCCHHHHHHHHHHCCCeEEEEeee
Confidence 133446778899999999887644
No 103
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=96.95 E-value=0.017 Score=45.92 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|=|.=.++..|++.. +...+ ++.|..++..+ .+.+|++.+...++ -+..-|+.+.-. .
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~v-~~~~~d~~~~~~----~ 105 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLM-PNGRI--FALERNPQYLG---FIRDNLKKFVARNV-TLVEAFAPEGLD----D 105 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHC-TTSEE--EEEECCHHHHH---HHHHHHHHHTCTTE-EEEECCTTTTCT----T
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC-CCCEE--EEEeCCHHHHH---HHHHHHHHhCCCcE-EEEeCChhhhhh----c
Confidence 45678899999976666677788875 23445 45564444332 46677766543223 344456643321 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
...||.|+.+.+.. -+..+++.+..+|+++|.+.+....- .+.-.+..+.++.|+.
T Consensus 106 ~~~~D~i~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 106 LPDPDRVFIGGSGG-------------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCCSEEEESCCTT-------------------CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEECCCCc-------------------CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHHHHCCCc
Confidence 25699999987642 12367888999999999998873321 1334466677888873
No 104
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.0004 Score=61.71 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=71.5
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||.||=|+=+.++.|++.+. ...+ |+.|..+++.+ -+.+++.......+.|+ .-||.+.-. .+...+||
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-~~~v--~~VEidp~vi~---~Ar~~~~~~~~~rv~v~-~~Da~~~l~--~~~~~~fD 161 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-QSRN--TVVELDAELAR---LSREWFDIPRAPRVKIR-VDDARMVAE--SFTPASRD 161 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-TCEE--EEEESCHHHHH---HHHHHSCCCCTTTEEEE-ESCHHHHHH--TCCTTCEE
T ss_pred CEEEEEECCcCHHHHHHHHHCC-CcEE--EEEECCHHHHH---HHHHhccccCCCceEEE-ECcHHHHHh--hccCCCCC
Confidence 4999999999999999999874 3355 45554444442 23444332222234444 447665321 12356899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
.||.+.+...... ....-..||+.+..+|+++|.+.+.+.+..
T Consensus 162 vIi~D~~~~~~~~------------~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 162 VIIRDVFAGAITP------------QNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp EEEECCSTTSCCC------------GGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred EEEECCCCccccc------------hhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9999965543210 011236899999999999999987776543
No 105
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.93 E-value=0.0025 Score=49.96 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.+++......+ ..+...|+.++. +
T Consensus 29 ~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~- 94 (199)
T 2xvm_A 29 KVVKPGKTLDLGCGNGRNSLYLAAN-G--YDV--DAWDKNAMSIA---NVERIKSIENLDN-LHTRVVDLNNLT----F- 94 (199)
T ss_dssp TTSCSCEEEEETCTTSHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHHHTCTT-EEEEECCGGGCC----C-
T ss_pred hccCCCeEEEEcCCCCHHHHHHHHC-C--CeE--EEEECCHHHHH---HHHHHHHhCCCCC-cEEEEcchhhCC----C-
Confidence 4556789999997766677778876 2 344 55564343331 3555554433223 444556777753 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.+..-.. .+-+..+++.+..+|++||.+.|.
T Consensus 95 ~~~~D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 95 DRQYDFILSTVVLMFLE--------------AKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp CCCEEEEEEESCGGGSC--------------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceEEEEcchhhhCC--------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57799999986532211 112356788889999999997554
No 106
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.93 E-value=0.0019 Score=50.29 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|=|.=.++..|++. + ... .++.|..++..+ .+.+|++...-.+...+..-|+.+.-. ..
T Consensus 28 ~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~ 97 (177)
T 2esr_A 28 PYFNGGRVLDLFAGSGGLAIEAVSR-G-MSA--AVLVEKNRKAQA---IIQDNIIMTKAENRFTLLKMEAERAID---CL 97 (177)
T ss_dssp SCCCSCEEEEETCTTCHHHHHHHHT-T-CCE--EEEECCCHHHHH---HHHHHHHTTTCGGGEEEECSCHHHHHH---HB
T ss_pred hhcCCCeEEEeCCCCCHHHHHHHHc-C-CCE--EEEEECCHHHHH---HHHHHHHHcCCCCceEEEECcHHHhHH---hh
Confidence 3567889999997766667667775 2 234 455665444432 356666544211123445567766211 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
...||.|+.|.|.... ...+++..+.+ ..+|+++|.+.+......
T Consensus 98 ~~~fD~i~~~~~~~~~-------------~~~~~~~~l~~--~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPYAKE-------------TIVATIEALAA--KNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSSHHH-------------HHHHHHHHHHH--TTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCCCcc-------------hHHHHHHHHHh--CCCcCCCcEEEEEECCcc
Confidence 2459999999885211 12334444443 588999999988865543
No 107
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.91 E-value=0.0013 Score=59.05 Aligned_cols=146 Identities=15% Similarity=0.076 Sum_probs=85.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~ 91 (214)
+..+..+++||-+|=|.=.|+..+|+. + ...+ ++.|..++.. ..+.+|++.+.- .+...+..-|+.++-...
T Consensus 215 l~~~~~~~~VLDl~cG~G~~sl~la~~-g-~~~V--~~vD~s~~al---~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~ 287 (396)
T 3c0k_A 215 TRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQV--VSVDTSQEAL---DIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_dssp HHHHCTTCEEEEESCTTCSHHHHHHHT-T-CSEE--EEEESCHHHH---HHHHHHHHHTTCCGGGEEEEESCHHHHHHHH
T ss_pred HHHhhCCCeEEEeeccCCHHHHHHHHC-C-CCEE--EEEECCHHHH---HHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence 444467889999985555566667764 2 2344 4556444333 147777765432 112334555776642110
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKL 168 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~ 168 (214)
.-...+||.||.|.|..+...... ......+..++..+..+|+++|.++++-+..... +.| + +.+.+.+.
T Consensus 288 ~~~~~~fD~Ii~dpP~~~~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~ 360 (396)
T 3c0k_A 288 RDRGEKFDVIVMDPPKFVENKSQL-------MGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDA 360 (396)
T ss_dssp HHTTCCEEEEEECCSSTTTCSSSS-------SCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCCCChhHH-------HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHc
Confidence 001467999999999876532111 1122356678888999999999999887765532 122 2 33466677
Q ss_pred CCEE
Q 041136 169 GLVL 172 (214)
Q Consensus 169 gl~l 172 (214)
|..+
T Consensus 361 g~~~ 364 (396)
T 3c0k_A 361 GRDV 364 (396)
T ss_dssp TCCE
T ss_pred CCeE
Confidence 7544
No 108
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=96.90 E-value=0.014 Score=46.50 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=81.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++. + .++ |+.|..++.. +..++.... +...|+.++.. .+...
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~--~~~D~~~~~~----------~~~~~~~~~-~~~~d~~~~~~--~~~~~ 92 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRV--SGIEAFPEAA----------EQAKEKLDH-VVLGDIETMDM--PYEEE 92 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEE--EEEESSHHHH----------HHHHTTSSE-EEESCTTTCCC--CSCTT
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeE--EEEeCCHHHH----------HHHHHhCCc-EEEcchhhcCC--CCCCC
Confidence 57889999998877777778876 3 344 4555433322 222222223 44557665422 24557
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-----------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD----------------------- 153 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~----------------------- 153 (214)
.||.|+.+..-.-.. + ...+++.+..+|+++|.+.++.-..
T Consensus 93 ~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLF-------------D---PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLD 156 (230)
T ss_dssp CEEEEEEESCGGGSS-------------C---HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTB
T ss_pred ccCEEEECChhhhcC-------------C---HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCC
Confidence 899999975432211 1 1377888999999999998875321
Q ss_pred ----CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 ----HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 ----~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
..++...+..+.+++||...+...+.
T Consensus 157 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 157 KTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp TTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 11344567788999999988766544
No 109
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=96.89 E-value=0.012 Score=50.68 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=82.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++. .+||-||=|.=.++..|++.+. ++..|+.|. +... ..+.+++....-.+..-+..-|+.+ . +.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~---~~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 231 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEP---SARGVMLDR-EGSL---GVARDNLSSLLAGERVSLVGGDMLQ--E---VP 231 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCT---TCEEEEEEC-TTCT---HHHHHHTHHHHHTTSEEEEESCTTT--C---CC
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCC---CCEEEEeCc-HHHH---HHHHHHHhhcCCCCcEEEecCCCCC--C---CC
Confidence 5666 8999999777677777998874 235566776 4433 2355565544322223334446654 1 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe---cC-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL---RD------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl---~~------------------- 152 (214)
..||.|+.+..-.-.. ..-...+++.+..+|+|||.+.|.- .+
T Consensus 232 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 296 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLD--------------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACA 296 (334)
T ss_dssp -SSCSEEEEESCGGGCC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHS
T ss_pred -CCCCEEEEchhccCCC--------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCC
Confidence 4699999876643221 1123567788889999999987762 11
Q ss_pred CCCCCcccHhhHHHhcCCEEEEEec
Q 041136 153 DHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 153 ~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
|..++.=++.++.+++||...+..+
T Consensus 297 ~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 297 GRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceeEEEE
Confidence 1112233456778888998887654
No 110
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=96.89 E-value=0.0035 Score=49.73 Aligned_cols=112 Identities=8% Similarity=0.014 Sum_probs=68.6
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.......+||-+|-|.=.++..++...+ . ..++.|..++..+ .+.++++... .++.+ ...|+.++. +
T Consensus 19 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~--~--~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~ 85 (209)
T 2p8j_A 19 NESNLDKTVLDCGAGGDLPPLSIFVEDG--Y--KTYGIEISDLQLK---KAENFSRENN-FKLNI-SKGDIRKLP----F 85 (209)
T ss_dssp HHSSSCSEEEEESCCSSSCTHHHHHHTT--C--EEEEEECCHHHHH---HHHHHHHHHT-CCCCE-EECCTTSCC----S
T ss_pred hccCCCCEEEEECCCCCHHHHHHHHhCC--C--EEEEEECCHHHHH---HHHHHHHhcC-CceEE-EECchhhCC----C
Confidence 3456678999999776665444444443 3 4556675444442 3555554432 23444 445777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
...+||.|+.+.+-... ...-...+++.+..+|++||.+.++...
T Consensus 86 ~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHM--------------RKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp CTTCEEEEEECSCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCceeEEEEcChHHhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 45789999987542211 1123567788899999999999877543
No 111
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=96.89 E-value=0.00042 Score=61.03 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+..+||.||-|+=..+..|+++.+ ...+++.-+| +++.+ -|.+++..+ ....+. ++.-|+.+ |..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~Ar~~~~~~~~~~~~~rv~-~~~~D~~~~l~~-- 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEID--EMVID---VAKKFLPGMSCGFSHPKLD-LFCGDGFEFLKN-- 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSC--HHHHH---HHHHHCTTTSGGGGCTTEE-EECSCHHHHHHH--
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECC--HHHHH---HHHHHHHHhccccCCCCEE-EEEChHHHHHHh--
Confidence 3568999999888888888887642 3455554444 33331 344554432 122333 34557665 221
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|+.-.. ...|. ..||+.+..+|++||.+.+..
T Consensus 178 --~~~~fD~Ii~d~~~~~~~-------------~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 --HKNEFDVIITDSSDPVGP-------------AESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp --CTTCEEEEEECCC--------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred --cCCCceEEEEcCCCCCCc-------------chhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 246799999999864221 12344 889999999999999988763
No 112
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=96.88 E-value=0.011 Score=47.01 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=65.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.......+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.. ......-+...|+.++
T Consensus 41 l~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~~D~s~~~~~---~a~~-----~~~~~~~~~~~d~~~~----- 102 (218)
T 3ou2_A 41 LRAGNIRGDVLELASGTGYWTRHLSGL-A--DRV--TALDGSAEMIA---EAGR-----HGLDNVEFRQQDLFDW----- 102 (218)
T ss_dssp HTTTTSCSEEEEESCTTSHHHHHHHHH-S--SEE--EEEESCHHHHH---HHGG-----GCCTTEEEEECCTTSC-----
T ss_pred HhcCCCCCeEEEECCCCCHHHHHHHhc-C--CeE--EEEeCCHHHHH---HHHh-----cCCCCeEEEecccccC-----
Confidence 344677789999996666666668776 2 344 45564333221 1111 1112244455677665
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+...+||.|+.++--.-. ....+..+++.+..+|++||.+.++.
T Consensus 103 ~~~~~~D~v~~~~~l~~~--------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 103 TPDRQWDAVFFAHWLAHV--------------PDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp CCSSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEEechhhcC--------------CHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 346789999998632111 12356778888999999999997764
No 113
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=96.87 E-value=0.011 Score=51.52 Aligned_cols=138 Identities=24% Similarity=0.260 Sum_probs=84.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.++.+|. ++..+ .+.+++....-.+...+..-|+.+ . +.
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 247 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEM-AGTVD---TARSYLKDEGLSDRVDVVEGDFFE--P---LP 247 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-TTHHH---HHHHHHHHTTCTTTEEEEECCTTS--C---CS
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCC---CCEEEEecC-HHHHH---HHHHHHHhcCCCCceEEEeCCCCC--C---CC
Confidence 567788999999777777777988863 456677776 43332 456666543222223344456653 1 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----C-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----D----------------- 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----~----------------- 153 (214)
..||.|+.+..-.-.. ..-...+++.+..+|++||.+.|.-.. .
T Consensus 248 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 312 (360)
T 1tw3_A 248 -RKADAIILSFVLLNWP--------------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL 312 (360)
T ss_dssp -SCEEEEEEESCGGGSC--------------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH
T ss_pred -CCccEEEEcccccCCC--------------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhc
Confidence 2399999877543221 112356777788999999998775221 1
Q ss_pred --CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 --HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 --~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
..++.-.+..+.+++||...+..+..
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 313 GGALRTREKWDGLAASAGLVVEEVRQLP 340 (360)
T ss_dssp SCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEEeCC
Confidence 11222345678888999988876654
No 114
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=96.87 E-value=0.0032 Score=50.83 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++.+||-+|=|.=.++..++... .. .+++.|..++..+ .+.+|++.+.-. ...-+..-|+.++.. .+...
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~--~~--~v~gvD~s~~~l~---~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 123 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ--AK--KVTFLELDKTVAN---QLKKNLQTLKCSSEQAEVINQSSLDFLK--QPQNQ 123 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CS--EEEEECSCHHHHH---HHHHHHHHTTCCTTTEEEECSCHHHHTT--SCCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHcc--CC--EEEEEECCHHHHH---HHHHHHHHhCCCccceEEEECCHHHHHH--hhccC
Confidence 57899999844444444455442 22 3556775555442 467777655321 223455567776532 12356
Q ss_pred c-ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 97 K-FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 97 ~-FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+ ||.|+.|.|.. .. ...+++..+.+ ..+|+++|.+.++.....
T Consensus 124 ~~fD~I~~~~~~~-~~------------~~~~~l~~~~~--~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 124 PHFDVVFLDPPFH-FN------------LAEQAISLLCE--NNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCEEEEEECCCSS-SC------------HHHHHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred CCCCEEEECCCCC-Cc------------cHHHHHHHHHh--cCccCCCcEEEEEECCCC
Confidence 7 99999999932 11 01233333332 568999999988866543
No 115
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=96.86 E-value=0.0097 Score=48.16 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=64.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+-.+..+||-||=|.=.++..|++. + ...++ +.|..++..+ .+.+++. ..++ .+...|+..+. +
T Consensus 39 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~--~vD~s~~~~~---~a~~~~~---~~~~-~~~~~d~~~~~----~ 103 (243)
T 3bkw_A 39 LPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVL--GLDLSEKMLA---RARAAGP---DTGI-TYERADLDKLH----L 103 (243)
T ss_dssp SCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEE--EEESCHHHHH---HHHHTSC---SSSE-EEEECCGGGCC----C
T ss_pred ccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEE--EEcCCHHHHH---HHHHhcc---cCCc-eEEEcChhhcc----C
Confidence 34557889999997776677778776 2 12454 4554333221 1222211 1133 34455777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....||.|+.++.-.-.. -+..+++.+..+|++||.+.++.
T Consensus 104 ~~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYVE----------------DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CTTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceEEEEeccccccc----------------hHHHHHHHHHHhcCcCcEEEEEe
Confidence 467899999987532211 12367888899999999998864
No 116
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=96.85 E-value=0.025 Score=46.61 Aligned_cols=150 Identities=9% Similarity=0.039 Sum_probs=80.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS-- 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~-- 94 (214)
+..+||-+|=|.=.++..|++... + ..+++.|..++..+ .+.+|++.+.-.+-.-+..-|+.+ +... +.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~--~~v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~ 136 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-G--WYFLATEVDDMCFN---YAKKNVEQNNLSDLIKVVKVPQKTLLMDA--LKEE 136 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-C--CEEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTCSSTTT--STTC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-C--CeEEEEECCHHHHH---HHHHHHHHcCCCccEEEEEcchhhhhhhh--hhcc
Confidence 567999999665555556777653 2 34556664444432 477777665322323444557776 2321 22
Q ss_pred -CCcccEEEEcCCCCCCCC---CCCcccH-------HHH-------H--HhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 -QMKFDVIIFNFPHAGHSP---PLSEQDT-------NLI-------K--RHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 -~~~FD~IiFNFPH~G~~~---~~~~~~~-------~~i-------~--~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+.|.|...... ....++. ..+ + ---.++..++..+..+|+++|.++..+. .
T Consensus 137 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~--~ 214 (254)
T 2h00_A 137 SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG--K 214 (254)
T ss_dssp CSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES--S
T ss_pred cCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCC--C
Confidence 257999999999875420 0000000 000 0 0112344555556677888887765432 2
Q ss_pred CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
+...=.+.++++++|+.-.+..+
T Consensus 215 ~~~~~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 215 KCSLAPLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp TTSHHHHHHHHHHTTCSEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCceEEEE
Confidence 22223566788899997665443
No 117
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=96.83 E-value=0.0098 Score=54.11 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=81.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-+|=|.=.|++.||+. ...+ ++.|..++..+ .|.+|++.+.-.+ ..++.-|+.+.-....+..
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~---~~~V--~gvD~s~~al~---~A~~n~~~~~~~~-v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ---AASV--VGVEGVPALVE---KGQQNARLNGLQN-VTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT---SSEE--EEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCTTSCCSSSGGGT
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh---CCEE--EEEeCCHHHHH---HHHHHHHHcCCCc-eEEEECCHHHHhhhhhhhc
Confidence 356789999985555555557765 2344 45564444332 4777776543223 3445557766322112344
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.||.|.|-.|.. . .-+.|.. +++++-|+|+ | .|.....-.....+.|+.+...
T Consensus 355 ~~fD~Vv~dPPr~g~~--------~---~~~~l~~---------~~p~~ivyvs-c--~p~tlard~~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 355 NGFDKVLLDPARAGAA--------G---VMQQIIK---------LEPIRIVYVS-C--NPATLARDSEALLKAGYTIARL 411 (433)
T ss_dssp TCCSEEEECCCTTCCH--------H---HHHHHHH---------HCCSEEEEEE-S--CHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEECCCCccHH--------H---HHHHHHh---------cCCCeEEEEE-C--ChHHHHhhHHHHHHCCcEEEEE
Confidence 6799999999998851 1 1122221 5676666776 2 2322222223445679999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.+|| +||.=.|-
T Consensus 412 ~~~d--~Fp~t~Hv 423 (433)
T 1uwv_A 412 AMLD--MFPHTGHL 423 (433)
T ss_dssp EEEC--CSTTSSCC
T ss_pred EEec--cCCCCCeE
Confidence 9997 78866653
No 118
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=96.83 E-value=0.009 Score=51.88 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH------h-----CCCEEEEccc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW------S-----RGCLVLHGVN 83 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~------~-----~g~~Vl~~VD 83 (214)
...++.+||-+|-|.=.++.+|++..++...+++ +|..++..+ .+.+|++.+. . .++. +...|
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~--vD~~~~~~~---~a~~~~~~~~~~~~ln~~~~~~~~v~-~~~~d 175 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVD-FIHKD 175 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEE-EEESC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEE--EeCCHHHHH---HHHHHHHHhhcccccccccccCCceE-EEECC
Confidence 3467889999998888888889998765445555 564444432 4777777643 1 2333 34457
Q ss_pred cccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 84 VHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 84 At~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+.++.. .+....||.|+.|.|+.-. ++..+..+|++||.+.+..
T Consensus 176 ~~~~~~--~~~~~~fD~V~~~~~~~~~---------------------~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 176 ISGATE--DIKSLTFDAVALDMLNPHV---------------------TLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp TTCCC---------EEEEEECSSSTTT---------------------THHHHGGGEEEEEEEEEEE
T ss_pred hHHccc--ccCCCCeeEEEECCCCHHH---------------------HHHHHHHhcCCCcEEEEEe
Confidence 776531 2445679999998775321 5567889999999987763
No 119
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=96.82 E-value=0.00089 Score=58.48 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+.++||.||=|+=.+++.|+++.+ ...++ +.|..+++.+ -+.+++..+ ....+.++. -||.+ |..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~--~vDid~~~i~---~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~-- 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVV--QCEIDEDVIQ---VSKKFLPGMAIGYSSSKLTLHV-GDGFEFMKQ-- 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEE--EEESCHHHHH---HHHHHCHHHHGGGGCTTEEEEE-SCHHHHHHT--
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEE--EEECCHHHHH---HHHHHhHHhhcccCCCcEEEEE-CcHHHHHhh--
Confidence 4668999999888888888887642 33454 4454344332 355566553 223455544 46655 322
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|..-.. ........||+.+..+|+++|.+.+..
T Consensus 165 --~~~~fD~Ii~d~~~~~~~------------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 165 --NQDAFDVIITDSSDPMGP------------AESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp --CSSCEEEEEEECC-----------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCceEEEECCCCCCCc------------chhhhHHHHHHHHHhccCCCeEEEEec
Confidence 246799999998864321 011234679999999999999987753
No 120
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=96.79 E-value=0.016 Score=46.79 Aligned_cols=129 Identities=20% Similarity=0.187 Sum_probs=79.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..|++. ++.|..++..+ .+.+ .++.++ ..|+.++. +....
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~---~a~~-------~~~~~~-~~d~~~~~----~~~~~ 102 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAE---IARK-------RGVFVL-KGTAENLP----LKDES 102 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC---------EEEESCHHHHH---HHHH-------TTCEEE-ECBTTBCC----SCTTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHH---HHHh-------cCCEEE-EcccccCC----CCCCC
Confidence 3789999996655555555432 77776544432 1222 256554 44776653 44578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------CC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH---------------------PY 156 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~---------------------Py 156 (214)
||.|+.+..-.-.. -...+++.+..+|++||.+.++..... .+
T Consensus 103 fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (219)
T 1vlm_A 103 FDFALMVTTICFVD----------------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF 166 (219)
T ss_dssp EEEEEEESCGGGSS----------------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCC
T ss_pred eeEEEEcchHhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccC
Confidence 99999986522110 024577888899999999988743211 13
Q ss_pred CcccHhhHHHhcCCEEEEEecCCCCCCCCCcc
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~~ 188 (214)
+.-.+..+.+++||...+..... ..|.|..
T Consensus 167 ~~~~l~~~l~~~Gf~~~~~~~~~--~~~p~~~ 196 (219)
T 1vlm_A 167 STEELMDLMRKAGFEEFKVVQTL--FKHPSEL 196 (219)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEC--CSCGGGC
T ss_pred CHHHHHHHHHHCCCeEEEEeccc--CCCCCcc
Confidence 34457788899999988765443 2344443
No 121
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.79 E-value=0.013 Score=47.48 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~ 94 (214)
-..+.+||-||=|.=.++..|++. + ..+ ++.|..++..+ .+.+|++.+...+...+..-|+.+ +..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~--~~v--~~vD~s~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~~~~----- 119 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-G--GRA--ITIEPRADRIE---NIQKNIDTYGLSPRMRAVQGTAPAALAD----- 119 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCTTGGGTT-----
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-C--CEE--EEEeCCHHHHH---HHHHHHHHcCCCCCEEEEeCchhhhccc-----
Confidence 466789999996665566667776 2 344 55665444432 466777665433123344457766 322
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.+. +. + .. +++.+..+|+++|.+.+.... +-+...+.+..++.|+.+.+
T Consensus 120 ~~~~D~v~~~~---~~--------------~---~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 120 LPLPEAVFIGG---GG--------------S---QA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp SCCCSEEEECS---CC--------------C---HH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEECC---cc--------------c---HH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCCCcEEE
Confidence 24699999765 21 1 22 677888999999999887543 22455667777788888776
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 177 i 177 (204)
T 3njr_A 177 I 177 (204)
T ss_dssp E
T ss_pred E
Confidence 4
No 122
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=96.78 E-value=0.00074 Score=59.97 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
....+||.||-|+=..+..|+++.+ ...|++.-+| +++.+ -+.+|+..+ ....+.++ .-|+.+.-. .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis--~~~l~---~Ar~~~~~~~~gl~~~rv~~~-~~D~~~~l~--~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEID--KMVVD---VSKQFFPDVAIGYEDPRVNLV-IGDGVAFLK--N 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESC--HHHHH---HHHHHCHHHHGGGGSTTEEEE-ESCHHHHHH--T
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECC--HHHHH---HHHHHHHhhccccCCCcEEEE-ECCHHHHHH--h
Confidence 4568999999888888888887643 3455554444 33331 355666554 22234444 447765311 1
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.||.|.++.-.. ........||+.+..+|++||.+.+.
T Consensus 190 ~~~~~fDlIi~d~~~p~~~------------~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 190 AAEGSYDAVIVDSSDPIGP------------AKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp SCTTCEEEEEECCCCTTSG------------GGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCccEEEECCCCccCc------------chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2346799999998753221 01112478999999999999998775
No 123
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=96.76 E-value=0.00081 Score=57.71 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+.++||.||=|+=+.+..++++.+ ...+++.-+| +++.+ -+.+|+..+. ...+.++.+ ||.+ |..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid--~~~v~---~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~-- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDID--GKVIE---YSKKFLPSIAGKLDDPRVDVQVD-DGFMHIAK-- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESC--HHHHH---HHHHHCHHHHTTTTSTTEEEEES-CSHHHHHT--
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECC--HHHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh--
Confidence 3578999999888888888887643 3355554444 33332 3556665542 223455544 7665 322
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|+..... . ......||+.+..+|+++|.+.+..
T Consensus 145 --~~~~fD~Ii~d~~~~~~~~---~---------~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 145 --SENQYDVIMVDSTEPVGPA---V---------NLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp --CCSCEEEEEESCSSCCSCC---C---------CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred --CCCCeeEEEECCCCCCCcc---h---------hhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1467999999998743210 0 0023568899999999999987763
No 124
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=96.75 E-value=0.0043 Score=51.46 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~ 93 (214)
.++.+||-||=|.=.++..||+... ....|+.|.. +.+.+.=..+.+++ +..| -..+..-|+..+... +
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~---~~~v~GvD~s~~~ml~~A~~A~~~~---~~~~~~~v~~~~~d~~~l~~~--~ 94 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ---NTFYIGIDPVKENLFDISKKIIKKP---SKGGLSNVVFVIAAAESLPFE--L 94 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT---TEEEEEECSCCGGGHHHHHHHTSCG---GGTCCSSEEEECCBTTBCCGG--G
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHHH---HHcCCCCeEEEEcCHHHhhhh--c
Confidence 4677899999655556666776542 4556677743 44421000012222 2223 245677888888421 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE--EecCC----------CC--CCcc
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV--TLRDD----------HP--YNQW 159 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V--Tl~~~----------~P--y~~W 159 (214)
...+|.|..|||..- .....+.-...+|+.+..+|+|||.+.+ ++.+. .| ...|
T Consensus 95 -~d~v~~i~~~~~~~~-----------~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
T 3p2e_A 95 -KNIADSISILFPWGT-----------LLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAY 162 (225)
T ss_dssp -TTCEEEEEEESCCHH-----------HHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHH
T ss_pred -cCeEEEEEEeCCCcH-----------HhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhh
Confidence 267999999998321 0011111134688899999999999988 22221 11 2234
Q ss_pred ----cHhhHHHhcCCEEEEEecCCCCCCCCC
Q 041136 160 ----NVMGLADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 160 ----~i~~lA~~~gl~l~~~~~F~~~~yPgY 186 (214)
.+..+.+++||.+.+...|+......+
T Consensus 163 ~~~~el~~~l~~aGf~v~~~~~~~~~~~~~~ 193 (225)
T 3p2e_A 163 FLSEQYKAELSNSGFRIDDVKELDNEYVKQF 193 (225)
T ss_dssp HHSHHHHHHHHHHTCEEEEEEEECHHHHTTC
T ss_pred cchHHHHHHHHHcCCCeeeeeecCHHHHHHH
Confidence 367788889999999888885533333
No 125
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.73 E-value=0.0023 Score=50.71 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.. . .++++ .|..+...+ .+.+++.. ..++.+ ...|+.++. +...
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~--~D~s~~~~~---~a~~~~~~--~~~i~~-~~~d~~~~~----~~~~ 106 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGG-F-PNVTS--VDYSSVVVA---AMQACYAH--VPQLRW-ETMDVRKLD----FPSA 106 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTT-C-CCEEE--EESCHHHHH---HHHHHTTT--CTTCEE-EECCTTSCC----SCSS
T ss_pred CCCCeEEEECCCCcHHHHHHHHcC-C-CcEEE--EeCCHHHHH---HHHHhccc--CCCcEE-EEcchhcCC----CCCC
Confidence 678899999977666666677762 2 25555 453333321 23333332 123444 455777762 4567
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.+.|-..........- ..-..+..-+..+++.+..+|+++|.+.+..
T Consensus 107 ~fD~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 107 SFDVVLEKGTLDALLAGERDPW-TVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp CEEEEEEESHHHHHTTTCSCTT-SCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEECcchhhhcccccccc-ccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 8999998866321000000000 0001345667889999999999999997773
No 126
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=96.72 E-value=0.01 Score=47.71 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
....+||-||=|.=.++..|++..+ . .-.|+.|..++..+ .+.+++.... ..++. +..-|+..+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~--~~v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~--- 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-F--EQITGVDVSYSVLE---RAKDRLKIDRLPEMQRKRIS-LFQSSLVYRD--- 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-C--CEEEEEESCHHHHH---HHHHHHTGGGSCHHHHTTEE-EEECCSSSCC---
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-C--CEEEEEECCHHHHH---HHHHHHHhhccccccCcceE-EEeCcccccc---
Confidence 4678999999666667777887642 2 34455664444332 3444443221 11333 3444664432
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+...+||.|+.+..-.-. ...-+..+++.+..+|++||.+.++..
T Consensus 98 -~~~~~fD~V~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 98 -KRFSGYDAATVIEVIEHL--------------DENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp -GGGTTCSEEEEESCGGGC--------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -cccCCCCEEEEHHHHHhC--------------CHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 345789999987543211 122466788999999999996666644
No 127
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=96.72 E-value=0.0076 Score=48.96 Aligned_cols=112 Identities=9% Similarity=0.024 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCC-CC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHP-TL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~-~~ 93 (214)
....++||-||=|.=..+..||+.++.+..| |+.|..++..+ .+.+|++.+.-.+..-+..-|+.+ +.... .+
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARL--LTMEINPDCAA---ITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTS
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEE--EEEeCChHHHH---HHHHHHHHcCCCCceEEEECCHHHHHHHHHHhc
Confidence 3467899999977666677788876544444 45564444432 477777766432223345557755 22211 12
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.++... .-...++..+ .+|++||.+.+.
T Consensus 131 ~~~~fD~V~~d~~~~~~----------------~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRY----------------LPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CCCCCSEEEECSCGGGH----------------HHHHHHHHHT-TCCCTTCEEEES
T ss_pred CCCceEEEEEcCCcccc----------------hHHHHHHHhc-cccCCCeEEEEe
Confidence 23689999998654221 1123566677 999999998775
No 128
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=96.72 E-value=0.0029 Score=51.70 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
..+..+||-||-|.=.++..|++.++ +..+ ++.|..++..+ .+.++++.+...+...+...|+.+.-. .+ .
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 123 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALP-EATI--VSIERDERRYE---EAHKHVKALGLESRIELLFGDALQLGE--KLEL 123 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCT-TCEE--EEECCCHHHHH---HHHHHHHHTTCTTTEEEECSCGGGSHH--HHTT
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEECCHHHHHH--hccc
Confidence 34678999999877677777888874 3344 55665444432 366666554322224445567765311 11 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.|.. ....+++.+..+|++||.+.+.
T Consensus 124 ~~~fD~I~~~~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 124 YPLFDVLFIDAAKG-------------------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp SCCEEEEEEEGGGS-------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCccEEEECCCHH-------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 36799999988742 1346778889999999999886
No 129
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=96.72 E-value=0.0091 Score=51.85 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCCC-CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTN-NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~-~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
++++ ..+||-||=|.=.++..|++.+. ++.+|.+|..+.+. .+.+++......+-..+..-|+.+... +
T Consensus 175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~----~a~~~~~~~~~~~~v~~~~~d~~~~~~---~ 244 (352)
T 3mcz_A 175 GVFARARTVIDLAGGHGTYLAQVLRRHP---QLTGQIWDLPTTRD----AARKTIHAHDLGGRVEFFEKNLLDARN---F 244 (352)
T ss_dssp GGGTTCCEEEEETCTTCHHHHHHHHHCT---TCEEEEEECGGGHH----HHHHHHHHTTCGGGEEEEECCTTCGGG---G
T ss_pred CCcCCCCEEEEeCCCcCHHHHHHHHhCC---CCeEEEEECHHHHH----HHHHHHHhcCCCCceEEEeCCcccCcc---c
Confidence 3445 88999999776677777998874 35667778733322 355555443211223445556655321 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--C-------------------
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--D------------------- 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~------------------- 152 (214)
....||.|+.+.--.-. ..+-...+++.+..+|+|||.+.|.-. .
T Consensus 245 ~~~~~D~v~~~~vlh~~--------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T 3mcz_A 245 EGGAADVVMLNDCLHYF--------------DAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVN 310 (352)
T ss_dssp TTCCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHH
T ss_pred CCCCccEEEEecccccC--------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhh
Confidence 23459999987643322 112345677888999999999876521 1
Q ss_pred ---CCCCCcccHhhHHHhcCCEEEE
Q 041136 153 ---DHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 153 ---~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
+..++.-++..+.+++||.+.+
T Consensus 311 ~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 311 TNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHCCCceee
Confidence 1122333466788899999887
No 130
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=96.71 E-value=0.00067 Score=59.69 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||-|+=.++..|+++.+ ...+++.-+|. ++.+ -+.+|+..+ ....+.++. -|+.+.-.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~--~~l~---~ar~~~~~~~~~~~~~~v~~~~-~D~~~~l~--- 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE--TVIE---VSKIYFKNISCGYEDKRVNVFI-EDASKFLE--- 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCH--HHHH---HHHHHCTTTSGGGGSTTEEEEE-SCHHHHHH---
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHHHhhccccCCCcEEEEE-ccHHHHHh---
Confidence 3568999999888888888887643 34555554443 3331 355555442 222344444 46654211
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....+||.||.|.|+.-.. ...|. ..|++.+..+|++||.+.+..
T Consensus 185 ~~~~~fDvIi~d~~~p~~~-------------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 185 NVTNTYDVIIVDSSDPIGP-------------AETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp HCCSCEEEEEEECCCSSSG-------------GGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCCceEEEECCcCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1136799999998743210 11233 788999999999999998764
No 131
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.71 E-value=0.009 Score=50.14 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++.++++. + ..++++-.|... +. .+.+|++...- .+.+. .-|+.+. +...
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~-v~----~a~~n~~~~~~-~v~~~-~~d~~~~-----~~~~ 183 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMV-LP----QAEANAKRNGV-RPRFL-EGSLEAA-----LPFG 183 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGG-HH----HHHHHHHHTTC-CCEEE-ESCHHHH-----GGGC
T ss_pred CCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHH-HH----HHHHHHHHcCC-cEEEE-ECChhhc-----CcCC
Confidence 56789999997766666667764 3 256665554422 21 35566654321 13333 2344431 2346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|.|. ..+..++..+..+|+++|.+.++-.. +.+.-.+..+.+++||.+.+..
T Consensus 184 ~fD~Vv~n~~~-------------------~~~~~~l~~~~~~LkpgG~lils~~~--~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 184 PFDLLVANLYA-------------------ELHAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp CEEEEEEECCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCcH-------------------HHHHHHHHHHHHHcCCCCEEEEEeec--cCCHHHHHHHHHHCCCEEEEEe
Confidence 79999999753 12467788899999999999876221 1234567778888999987753
No 132
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=96.69 E-value=0.00076 Score=58.96 Aligned_cols=113 Identities=16% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccC-CCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTM-DRH 90 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L-~~~ 90 (214)
....+||.||=|+=.+++.|+++.+ ..++++.-+| +++.+ -+.+++..+. ...+.+ +.-|+.+. ..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~ar~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDID--GELVE---VAKRHMPEWHQGAFDDPRAVL-VIDDARAYLER- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESC--HHHHH---HHHHHCHHHHTTGGGCTTEEE-EESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECC--HHHHH---HHHHHhHhhccccccCCceEE-EEchHHHHHHh-
Confidence 3568999999888888888988653 3355555444 33332 3556665542 223444 44477652 21
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCCCEEEEEe
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.+.|+.....+ . ...| ...||+.+..+|++||.+.+..
T Consensus 148 ---~~~~fD~Ii~d~~~~~~~~~---~-------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 ---TEERYDVVIIDLTDPVGEDN---P-------ARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ---CCCCEEEEEEECCCCBSTTC---G-------GGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---cCCCccEEEECCCCcccccC---c-------chhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 24679999999887431000 0 1112 5789999999999999987763
No 133
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=96.69 E-value=0.0055 Score=53.88 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=||-+-++.++++.+ ...|+.--+|..- ++.++| -..-|-..+..-.+.|+++ ||.+.-+ -..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~-lp~~~~~~~~dpRv~v~~~-Dg~~~l~---~~~ 155 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQY-LPNHNAGSYDDPRFKLVID-DGVNFVN---QTS 155 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEES-CTTTTTS---CSS
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhc-CccccccccCCCcEEEEec-hHHHHHh---hcc
Confidence 4678999999999999999988753 3567777677532 333344 1111222234344666655 6665332 235
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
++||.||-+-|...+.. ..-.-..||+.++..|+++|.+.+-
T Consensus 156 ~~yDvIi~D~~dp~~~~------------~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPG------------ESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp CCEEEEEESCCCCCCTT------------CCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCc------------hhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 78999999998764321 1113468999999999999987653
No 134
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.011 Score=45.46 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.. . ..++.|..++..+ .+.++ ..++.+.. .| + .+.
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~----~-~v~~vD~s~~~~~---~a~~~-----~~~v~~~~-~d---~----~~~ 72 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFA----T-KLYCIDINVIALK---EVKEK-----FDSVITLS-DP---K----EIP 72 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTE----E-EEEEECSCHHHHH---HHHHH-----CTTSEEES-SG---G----GSC
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhc----C-eEEEEeCCHHHHH---HHHHh-----CCCcEEEe-CC---C----CCC
Confidence 45678899999977767777788765 1 4556664443331 23322 22444443 34 1 245
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------C----CCcccHhhH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------P----YNQWNVMGL 164 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------P----y~~W~i~~l 164 (214)
..+||.|+.+....-.. + ...+++.+..+|+++|.+.++-.... | ++...+..+
T Consensus 73 ~~~~D~v~~~~~l~~~~----~------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (170)
T 3i9f_A 73 DNSVDFILFANSFHDMD----D------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGW 136 (170)
T ss_dssp TTCEEEEEEESCSTTCS----C------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHH
T ss_pred CCceEEEEEccchhccc----C------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHH
Confidence 57899999987654321 0 23677888899999999977743211 1 233346666
Q ss_pred HHhcCCEEEEEecCCCCCCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY 186 (214)
.+ ||...+...+.+..|.=+
T Consensus 137 l~--Gf~~~~~~~~~~~~~~l~ 156 (170)
T 3i9f_A 137 FS--NFVVEKRFNPTPYHFGLV 156 (170)
T ss_dssp TT--TEEEEEEECSSTTEEEEE
T ss_pred Hh--CcEEEEccCCCCceEEEE
Confidence 65 999999888776655433
No 135
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=96.65 E-value=0.014 Score=46.86 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHH-HHHHhCC--CEEEEccccccCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHL-QSLWSRG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni-~~L~~~g--~~Vl~~VDAt~L~~~~~ 92 (214)
-..+.+||-||=|.=.++..|++.+. + .-.|+.|..++..+. +..+. +..+..+ -..+...|+.++.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~--~~v~gvD~s~~~l~~---~~~~a~~~~~~~~~~~v~~~~~d~~~l~---- 94 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP-S--RLVVALDADKSRMEK---ISAKAAAKPAKGGLPNLLYLWATAERLP---- 94 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT-T--EEEEEEESCGGGGHH---HHHHHTSCGGGTCCTTEEEEECCSTTCC----
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC-C--CEEEEEECCHHHHHH---HHHHHHHhhhhcCCCceEEEecchhhCC----
Confidence 45678999999666566666888752 2 445566644432211 11111 1122223 3445566888764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH---HHHHHHHHhccCCCCEEEEEecCC-----------CCC--
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL---EAFLKNGREMLGEGGEVHVTLRDD-----------HPY-- 156 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL---~~Ff~Sa~~lL~~~G~i~VTl~~~-----------~Py-- 156 (214)
+.... |.|+..+|+.. .++..+ ..+++.+..+|+|||.+.++.... .|.
T Consensus 95 ~~~~~-d~v~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (218)
T 3mq2_A 95 PLSGV-GELHVLMPWGS--------------LLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPT 159 (218)
T ss_dssp SCCCE-EEEEEESCCHH--------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCC
T ss_pred CCCCC-CEEEEEccchh--------------hhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccc
Confidence 33344 88887777421 122333 788899999999999999875321 110
Q ss_pred Ccc---cHhhHHHhcCCEEEEEecCCCC
Q 041136 157 NQW---NVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 157 ~~W---~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
..| .+..+.+.+|+.+.+...++..
T Consensus 160 ~~~~~~~l~~~l~~aGf~i~~~~~~~~~ 187 (218)
T 3mq2_A 160 PDSADEWLAPRYAEAGWKLADCRYLEPE 187 (218)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEECHH
T ss_pred hHHHHHHHHHHHHHcCCCceeeeccchh
Confidence 111 2556788899999887766544
No 136
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=96.64 E-value=0.012 Score=47.20 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.+.....+||-||-|.=.++..|+ ..+++.-.+.. ++.+ ...|+.++.
T Consensus 62 l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~-~~~d~~~~~---- 110 (215)
T 2zfu_A 62 LRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRV-TVCDMAQVP---- 110 (215)
T ss_dssp HHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTE-EESCTTSCS----
T ss_pred HhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceE-EEeccccCC----
Confidence 3455678899999965544444442 35666555443 2333 334666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
+....||.|+.++...- . + +..+++.+..+|++||.+.|+-......+.-.+..+.+++||.+
T Consensus 111 ~~~~~fD~v~~~~~l~~-~------~----------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~ 173 (215)
T 2zfu_A 111 LEDESVDVAVFCLSLMG-T------N----------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKI 173 (215)
T ss_dssp CCTTCEEEEEEESCCCS-S------C----------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEE
T ss_pred CCCCCEeEEEEehhccc-c------C----------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEE
Confidence 44678999999876431 1 0 24567778899999999988743322235566888999999998
Q ss_pred EEEe
Q 041136 173 KEKV 176 (214)
Q Consensus 173 ~~~~ 176 (214)
....
T Consensus 174 ~~~~ 177 (215)
T 2zfu_A 174 VSKD 177 (215)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
No 137
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=96.64 E-value=0.0082 Score=52.85 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.....+..-|+.++. +.
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s--~~~~----~a~~~~~~~~~~~~i~~~~~d~~~~~----~~ 128 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQS--EILY----QAMDIIRLNKLEDTITLIKGKIEEVH----LP 128 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESS--THHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CS
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChH--HHHH----HHHHHHHHcCCCCcEEEEEeeHHHhc----CC
Confidence 3466789999997665566667775 3 3466666554 3332 36666655432233445566777663 44
Q ss_pred CCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 95 QMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 95 ~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
..+||.||.+. ++... +...+..++..+..+|++||.+.
T Consensus 129 ~~~~D~Ivs~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLL--------------FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBT--------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhcc--------------CHHHHHHHHHHHHhhcCCCcEEE
Confidence 56899999997 44332 22356678888899999999975
No 138
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.64 E-value=0.0019 Score=49.48 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..|++.. .+ .++.|..++..+ .+.+|++.... ++. ++.-|+.+......-...+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~--v~~vD~~~~~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~~~~~~~~~~ 110 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WE--AVLVEKDPEAVR---LLKENVRRTGL-GAR-VVALPVEVFLPEAKAQGER 110 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CE--EEEECCCHHHHH---HHHHHHHHHTC-CCE-EECSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---Ce--EEEEeCCHHHHH---HHHHHHHHcCC-ceE-EEeccHHHHHHhhhccCCc
Confidence 67899999966555666677753 24 677776555442 46777766543 444 4455666521100011247
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
||.|+.|.|.. .. ..+++..+.+ ..+|+++|.+.++....
T Consensus 111 ~D~i~~~~~~~-~~-------------~~~~~~~~~~--~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 111 FTVAFMAPPYA-MD-------------LAALFGELLA--SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEEEEECCCTT-SC-------------TTHHHHHHHH--HTCEEEEEEEEEEEETT
T ss_pred eEEEEECCCCc-hh-------------HHHHHHHHHh--hcccCCCcEEEEEeCCc
Confidence 99999999976 21 1123333333 68999999998875543
No 139
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.015 Score=44.59 Aligned_cols=123 Identities=9% Similarity=0.080 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|=|.=.++..|++ ...+++ +.|..++..+ .+.+|++.+...+ .-+...|+.+. +.
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~-----~~ 97 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVY--AIDYLDGAIE---VTKQNLAKFNIKN-CQIIKGRAEDV-----LD 97 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT---TSSEEE--EEECSHHHHH---HHHHHHHHTTCCS-EEEEESCHHHH-----GG
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEE--EEeCCHHHHH---HHHHHHHHcCCCc-EEEEECCcccc-----cc
Confidence 446778999999777677777877 234555 4554344332 3555655443222 33445565541 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.+.| . .+..+++.+..+ ++|.+.++... +.....+.++.++.|+.+..
T Consensus 98 ~~~~D~i~~~~~---~-----------------~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 98 KLEFNKAFIGGT---K-----------------NIEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp GCCCSEEEECSC---S-----------------CHHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEECCc---c-----------------cHHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcCCeEEE
Confidence 368999999999 1 123455556666 99999887532 23456678888889987765
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 154 ~ 154 (183)
T 2yxd_A 154 V 154 (183)
T ss_dssp E
T ss_pred E
Confidence 3
No 140
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=96.63 E-value=0.0022 Score=51.47 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+-....+||-||=|.=.++..|++.. --.|+.|..++..+ .+.+++. ..+..-++..|+.++.
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~---~a~~~~~---~~~~~~~~~~d~~~~~----- 110 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC-----KRLTVIDVMPRAIG---RACQRTK---RWSHISWAATDILQFS----- 110 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE-----EEEEEEESCHHHHH---HHHHHTT---TCSSEEEEECCTTTCC-----
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC-----CEEEEEECCHHHHH---HHHHhcc---cCCCeEEEEcchhhCC-----
Confidence 345667899999977777777787763 24555665444331 2333332 2334455666887765
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.|+.+....-.. +.+.+..+++.+..+|++||.+.++..
T Consensus 111 ~~~~fD~v~~~~~l~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 111 TAELFDLIVVAEVLYYLE-------------DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CSCCEEEEEEESCGGGSS-------------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCccEEEEccHHHhCC-------------CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 257899999985533221 234567789999999999999988643
No 141
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=96.63 E-value=0.0067 Score=50.11 Aligned_cols=105 Identities=10% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
..+||-||-|.=..+..||+.++++..| |+.|..++..+ .+.+|++...-. +..-+..-||.++-. .+...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~g~~~~~i~~~~gda~~~l~--~~~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTL--TCIDPESEHQR---QAKALFREAGYSPSRVRFLLSRPLDVMS--RLANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEE--EEECSCHHHHH---HHHHHHHHTTCCGGGEEEECSCHHHHGG--GSCTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCcCcEEEEEcCHHHHHH--HhcCCC
Confidence 3499999988877888899987544444 56665454442 466777664422 223444556665422 133578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.+... ...||+.+..+|++||.|.+.
T Consensus 130 fD~V~~d~~~~~-------------------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 130 YQLVFGQVSPMD-------------------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EEEEEECCCTTT-------------------HHHHHHHHHHHEEEEEEEEET
T ss_pred cCeEEEcCcHHH-------------------HHHHHHHHHHHcCCCcEEEEe
Confidence 999998753210 124788899999999998874
No 142
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=96.62 E-value=0.011 Score=49.18 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~ 94 (214)
.....+||-||=|.=..+..||+.++.+..| |+.|..++..+ .+.+|++.+.-.+...+..-|+.+ +... ..
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~l~~~--~~ 133 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQL--LTLEADAHHAQ---VARENLQLAGVDQRVTLREGPALQSLESL--GE 133 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEE--EEEECCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHTC--CS
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHhc--CC
Confidence 4567899999977767777789887534444 55564444331 466676655432233445557765 3221 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+.+... ...+|+.+..+|++||.|.+.
T Consensus 134 ~~~fD~V~~d~~~~~-------------------~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 134 CPAFDLIFIDADKPN-------------------NPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp CCCCSEEEECSCGGG-------------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCeEEEEECCchHH-------------------HHHHHHHHHHhcCCCeEEEEe
Confidence 358999999764211 124788889999999988765
No 143
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.61 E-value=0.0078 Score=51.72 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++. + ..+++| .|..++..+ .+.+|++.+.-.+-..++.-|+.+. +. .+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~--vDis~~al~---~A~~n~~~~~l~~~v~~~~~D~~~~-----~~-~~ 189 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFA--TDVSSKAVE---IARKNAERHGVSDRFFVRKGEFLEP-----FK-EK 189 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-SCEEEE--EESCHHHHH---HHHHHHHHTTCTTSEEEEESSTTGG-----GG-GG
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCceEEEECcchhh-----cc-cc
Confidence 5679999998877788888887 3 445554 553333331 4777877664333244455566652 11 46
Q ss_pred c---cEEEEcCCCCCCCCCCCcccHHHHHH--hHHHH-----HHHHHHHH-hccCCCCEEEEEec
Q 041136 98 F---DVIIFNFPHAGHSPPLSEQDTNLIKR--HKNLL-----EAFLKNGR-EMLGEGGEVHVTLR 151 (214)
Q Consensus 98 F---D~IiFNFPH~G~~~~~~~~~~~~i~~--n~~LL-----~~Ff~Sa~-~lL~~~G~i~VTl~ 151 (214)
| |.||.|.|.++... .-..+ ++. ...|. ..|++.+. .+|++||.+.+.+-
T Consensus 190 f~~~D~IvsnPPyi~~~~-~l~~~---v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 190 FASIEMILSNPPYVKSSA-HLPKD---VLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp TTTCCEEEECCCCBCGGG-SCTTS---CCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cCCCCEEEEcCCCCCccc-ccChh---hccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 8 99999999987532 00000 010 11121 16888888 99999999998743
No 144
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=96.59 E-value=0.011 Score=48.84 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=64.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.. .++ |+.|..++..+ .+.+++. ++.++ ..|+.++. + ..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v--~gvD~s~~~~~---~a~~~~~-----~~~~~-~~d~~~~~----~-~~ 109 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF---GTV--EGLELSADMLA---IARRRNP-----DAVLH-HGDMRDFS----L-GR 109 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS---SEE--EEEESCHHHHH---HHHHHCT-----TSEEE-ECCTTTCC----C-SC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC---CeE--EEEECCHHHHH---HHHhhCC-----CCEEE-ECChHHCC----c-cC
Confidence 456899999977777777787752 244 55664333331 2333221 45444 45777653 2 57
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.++.-+..- .+.+-+..+++.+..+|+|||.+.|+
T Consensus 110 ~fD~v~~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 110 RFSAVTCMFSSIGHL------------AGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CEEEEEECTTGGGGS------------CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcCEEEEcCchhhhc------------CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 899999876311110 12445678899999999999999885
No 145
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=96.59 E-value=0.0077 Score=51.21 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++.+||-||=|.=.++.+|++.+.. .+.-.|+.|..+++.+ .|.++++......-.-+..-|+.++. + .
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~-~~~~v~gvD~s~~ml~---~A~~~~~~~~~~~~v~~~~~D~~~~~----~--~ 138 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHH-DNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDVIEGDIRDIA----I--E 138 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCS-SSCEEEEEESCHHHHH---HHHHHHHTSCCSSCEEEEESCTTTCC----C--C
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCC-CCCEEEEEECCHHHHH---HHHHHHHhhccCceEEEeeccccccc----c--c
Confidence 57889999995444455558887642 3455677885555442 46666655443222334445777654 2 4
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+.|+=-.-. ...-...+++.+..+|+|||.+.|+
T Consensus 139 ~~d~v~~~~~l~~~--------------~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 139 NASMVVLNFTLQFL--------------EPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp SEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccceeeeeeeec--------------CchhHhHHHHHHHHHcCCCcEEEEE
Confidence 59999998732111 0111235677788999999998776
No 146
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=96.58 E-value=0.0063 Score=53.69 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||=|.=.++..|++. + ...++|.-.. +.+. .+.++++...-.+...+..-|+.++. +...
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s--~~l~----~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 132 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS--SISD----YAVKIVKANKLDHVVTIIKGKVEEVE----LPVE 132 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS--THHH----HHHHHHHHTTCTTTEEEEESCTTTCC----CSSS
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH--HHHH----HHHHHHHHcCCCCcEEEEECcHHHcc----CCCC
Confidence 45789999995554556667776 3 3467665554 3332 36666665543344566677888763 4457
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
+||.||.+.+..... +...+..++..+..+|+|||.+.
T Consensus 133 ~fD~Iis~~~~~~l~-------------~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 133 KVDIIISEWMGYCLF-------------YESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp CEEEEEECCCBBTBT-------------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEEEcccccccc-------------CchhHHHHHHHHHHhCCCCCEEc
Confidence 899999998654321 12245677888899999999964
No 147
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=96.58 E-value=0.0097 Score=48.15 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++. ...|+.|..++..+ .+.+++.... .++.+ ...|+.++. +.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~------~~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~~- 94 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH------YEVTGVDLSEEMLE---IAQEKAMETN-RHVDF-WVQDMRELE----LP- 94 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT------SEEEEEESCHHHHH---HHHHHHHHTT-CCCEE-EECCGGGCC----CS-
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC------CeEEEEECCHHHHH---HHHHhhhhcC-CceEE-EEcChhhcC----CC-
Confidence 345689999997666666667654 23556665444332 3555554332 23444 445777653 22
Q ss_pred CcccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+||.|+.++ .|.. +..-+..+++.+..+|++||.+.++.
T Consensus 95 ~~fD~v~~~~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQ---------------TEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp SCEEEEEECTTGGGGCC---------------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcC---------------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 6799999875 3332 12345677889999999999998754
No 148
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=96.57 E-value=0.0071 Score=48.83 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=63.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..++... .. .+|+.|..++..+ .+.+|++.+.-.+ ..+..-|+.+... ....+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--~~--~V~~vD~s~~~l~---~a~~~~~~~~~~~-v~~~~~D~~~~~~---~~~~~ 122 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--AA--GATLIEMDRAVSQ---QLIKNLATLKAGN-ARVVNSNAMSFLA---QKGTP 122 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CS--EEEEECSCHHHHH---HHHHHHHHTTCCS-EEEECSCHHHHHS---SCCCC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--CC--EEEEEECCHHHHH---HHHHHHHHcCCCc-EEEEECCHHHHHh---hcCCC
Confidence 56899998855444444455542 12 4566775555442 4666776553222 3345567766321 13467
Q ss_pred ccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 98 FDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 98 FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
||.|+.|.| |.+. ..+++..+.+ ..+|+++|.+.++.....
T Consensus 123 fD~V~~~~p~~~~~--------------~~~~l~~l~~--~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 123 HNIVFVDPPFRRGL--------------LEETINLLED--NGWLADEALIYVESEVEN 164 (202)
T ss_dssp EEEEEECCSSSTTT--------------HHHHHHHHHH--TTCEEEEEEEEEEEEGGG
T ss_pred CCEEEECCCCCCCc--------------HHHHHHHHHh--cCccCCCcEEEEEECCCc
Confidence 999999999 4221 1233333332 456999999988866533
No 149
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=96.54 E-value=0.033 Score=49.01 Aligned_cols=108 Identities=13% Similarity=0.276 Sum_probs=69.8
Q ss_pred ccCCCCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
+.....+++||.||=|.-.++..+ |+..+ .. .|++|..++..+ .|.++++...-.++ -+..-||.++.
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~--V~gIDis~~~l~---~Ar~~~~~~gl~~v-~~v~gDa~~l~--- 185 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYG--MR--VNVVEIEPDIAE---LSRKVIEGLGVDGV-NVITGDETVID--- 185 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CE--EEEEESSHHHHH---HHHHHHHHHTCCSE-EEEESCGGGGG---
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCe-EEEECchhhCC---
Confidence 345578999999999987777544 44342 34 555665455442 47777766543233 34455777753
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...||.|+...- .. -...+++.+..+|+|||.+.+....+
T Consensus 186 ---d~~FDvV~~~a~---~~----------------d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 186 ---GLEFDVLMVAAL---AE----------------PKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp ---GCCCSEEEECTT---CS----------------CHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred ---CCCcCEEEECCC---cc----------------CHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 467999987431 10 02356777889999999999886544
No 150
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=96.54 E-value=0.016 Score=45.41 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++.. .+++.|..++..+. ..++.++ .-|+.+ .+...
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~------~v~gvD~s~~~~~~------------~~~~~~~-~~d~~~-----~~~~~ 77 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN------TVVSTDLNIRALES------------HRGGNLV-RADLLC-----SINQE 77 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS------EEEEEESCHHHHHT------------CSSSCEE-ECSTTT-----TBCGG
T ss_pred CCCCeEEEeccCccHHHHHHHhcC------cEEEEECCHHHHhc------------ccCCeEE-ECChhh-----hcccC
Confidence 345699999966555666677643 56666754444432 2334443 345544 13347
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.|+.|.|..-......-.. -....+++..+++.+ ++|.+.+..... .....+.++.++.|+.....
T Consensus 78 ~fD~i~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l-----pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 78 SVDVVVFNPPYVPDTDDPIIGG---GYLGREVIDRFVDAV-----TVGMLYLLVIEA--NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp GCSEEEECCCCBTTCCCTTTBC---CGGGCHHHHHHHHHC-----CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCCCccCCccccccC---CcchHHHHHHHHhhC-----CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEE
Confidence 8999999999764321000000 001244566665554 999997764221 24456777888899987653
No 151
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.52 E-value=0.0093 Score=48.86 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + . ..|+.|..++..+ .+.+++.... ..+.+ ...|+.++.. ..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~--~--~v~gvD~s~~~l~---~a~~~~~~~~-~~v~~-~~~d~~~~~~-----~~ 104 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-G--Y--EVVGLDLHEEMLR---VARRKAKERN-LKIEF-LQGDVLEIAF-----KN 104 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-T--C--EEEEEESCHHHHH---HHHHHHHHTT-CCCEE-EESCGGGCCC-----CS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-C--C--eEEEEECCHHHHH---HHHHHHHhcC-CceEE-EECChhhccc-----CC
Confidence 45679999996666666678775 2 2 4566675444432 3555554432 23444 4458877642 25
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.++..... .+.+-+..+++.+..+|+|||.+.+++
T Consensus 105 ~fD~v~~~~~~~~~-------------~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 105 EFDAVTMFFSTIMY-------------FDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CEEEEEECSSGGGG-------------SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccEEEEcCCchhc-------------CCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 79999976532211 012346778899999999999998765
No 152
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=96.52 E-value=0.019 Score=50.07 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.+|.+|..+.+.+. +++.....+..-+..-|+. ... .
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~~~------~~~~~~~~~~v~~~~~d~~--~~~---p 246 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHP---GLQGVLLDRAEVVARH------RLDAPDVAGRWKVVEGDFL--REV---P 246 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCT---TEEEEEEECHHHHTTC------CCCCGGGTTSEEEEECCTT--TCC---C
T ss_pred CccCCceEEEECCccCHHHHHHHHHCC---CCEEEEecCHHHhhcc------cccccCCCCCeEEEecCCC--CCC---C
Confidence 577889999999777777888999874 5778888885443311 1111111122334455664 121 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--CC--C----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--DD--H---------------- 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~~--~---------------- 154 (214)
.||.|+.+.--.-.. ..-...+++.+..+|+|||.+.|.-. .. .
T Consensus 247 --~~D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~ 310 (348)
T 3lst_A 247 --HADVHVLKRILHNWG--------------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAART 310 (348)
T ss_dssp --CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTS
T ss_pred --CCcEEEEehhccCCC--------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCC
Confidence 799999876543221 12234667889999999999977521 11 1
Q ss_pred --CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 --PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.++.-++..+.+++||...+..+
T Consensus 311 ~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 311 GQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEE
Confidence 12333466788899999988765
No 153
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=96.52 E-value=0.0011 Score=56.80 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-----------HhCCCEEEEccccc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-----------WSRGCLVLHGVNVH 85 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----------~~~g~~Vl~~VDAt 85 (214)
....+||.||=|+=.++..|+++ + ..++++.-+|. ++.+ -+.+++ .+ ....+.++. -|+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~--~~i~---~ar~~~-~~~~~l~~~~~~~~~~~v~~~~-~D~~ 144 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDE--DVIM---VSKDLI-KIDNGLLEAMLNGKHEKAKLTI-GDGF 144 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCH--HHHH---HHHHHT-CTTTTHHHHHHTTCCSSEEEEE-SCHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCH--HHHH---HHHHHH-hhccccccccccCCCCcEEEEE-CchH
Confidence 45689999998888888888886 3 34565555543 3321 244444 22 112344444 4665
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCCCEEEEEe
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+.-. . ..+||.||.|.|..... ...| ...|++.+..+|++||.+.+..
T Consensus 145 ~~l~---~-~~~fD~Ii~d~~~~~~~-------------~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 145 EFIK---N-NRGFDVIIADSTDPVGP-------------AKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp HHHH---H-CCCEEEEEEECCCCC------------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhc---c-cCCeeEEEECCCCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4211 1 46799999999863211 1112 4678999999999999987763
No 154
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=96.51 E-value=0.032 Score=45.37 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=63.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||.+|-|.=.++..|++. + ..++ +.|..++..+ .+.+|++.+.-.....+..-|+.+.. +..
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~--~vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 156 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-A--GEVW--TFEAVEEFYK---TAQKNLKKFNLGKNVKFFNVDFKDAE----VPE 156 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-S--SEEE--EECSCHHHHH---HHHHHHHHTTCCTTEEEECSCTTTSC----CCT
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-C--CEEE--EEecCHHHHH---HHHHHHHHcCCCCcEEEEEcChhhcc----cCC
Confidence 457889999998776677778877 2 3554 4554333331 35666654421122344455665432 134
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.|.|.. ..+++.+..+|+++|.+.+..
T Consensus 157 ~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 157 GIFHAAFVDVREP---------------------WHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp TCBSEEEECSSCG---------------------GGGHHHHHHHBCTTCEEEEEE
T ss_pred CcccEEEECCcCH---------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 6799999987621 123566788999999998874
No 155
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=96.45 E-value=0.041 Score=44.26 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=63.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++... ++ |+.|..+++.+ .+.+++ .++.+ ...|+.++. + ..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v--~~~D~s~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~-~~ 99 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG---DT--AGLELSEDMLT---HARKRL-----PDATL-HQGDMRDFR----L-GR 99 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS---EE--EEEESCHHHHH---HHHHHC-----TTCEE-EECCTTTCC----C-SS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC---cE--EEEeCCHHHHH---HHHHhC-----CCCEE-EECCHHHcc----c-CC
Confidence 5678999999777677777888753 44 55665444331 122221 23444 445777653 2 56
Q ss_pred cccEEEEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.. +.|... .+-+..+++.+..+|++||.+.++.
T Consensus 100 ~~D~v~~~~~~~~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKT---------------TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CEEEEEECTTGGGGCCS---------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcCchHhhcCC---------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 79999942 333321 2345678889999999999998863
No 156
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=96.45 E-value=0.0012 Score=56.90 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||=|+=+.+..|+++.+ ..++++.-+|. ++.+ -+.+++..+ ....+.+ +.-|+.+.-..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~i~---~a~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~-- 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE--TVIE---VSKIYFKNISCGYEDKRVNV-FIEDASKFLEN-- 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCH--HHHH---HHHHHCTTTSGGGGSTTEEE-EESCHHHHHHH--
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHhHHhccccCCCcEEE-EECChHHHHHh--
Confidence 4568999999888888888887642 34555555543 3321 244444332 2233444 44477652111
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.||.+.|..-.. ...|. ..|++.+..+|+++|.+.+.
T Consensus 148 -~~~~fD~Ii~d~~~~~~~-------------~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 148 -VTNTYDVIIVDSSDPIGP-------------AETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp -CCSCEEEEEEECCCTTTG-------------GGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCceEEEEcCCCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 146799999998754221 12233 78999999999999998776
No 157
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.44 E-value=0.0072 Score=50.78 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + .+ .|+.|..+...+ .+.+++..... + .-+...|+.++.. ..
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g--~~--v~~vD~s~~~~~---~a~~~~~~~~~-~-~~~~~~d~~~~~~-----~~ 183 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-G--YD--VTSWDHNENSIA---FLNETKEKENL-N-ISTALYDINAANI-----QE 183 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHTTC-C-EEEEECCGGGCCC-----CS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-C--Ce--EEEEECCHHHHH---HHHHHHHHcCC-c-eEEEEeccccccc-----cC
Confidence 36889999996666667678876 2 34 456665444332 35555444321 2 3344557776542 57
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.+.+..-. +...+..+++.+..+|++||.+.|.
T Consensus 184 ~fD~i~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 184 NYDFIVSTVVFMFL--------------NRERVPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp CEEEEEECSSGGGS--------------CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEccchhhC--------------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999998764321 1224556888899999999996554
No 158
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.41 E-value=0.0088 Score=52.55 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=+|+.. |+ + +.. +++.|..++.. ..+.+|++.+.-.+...++.-|+.++. .
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~--V~~vD~s~~ai---~~a~~n~~~n~l~~~v~~~~~D~~~~~-------~ 257 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N-AKK--IYAIDINPHAI---ELLKKNIKLNKLEHKIIPILSDVREVD-------V 257 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T-SSE--EEEEESCHHHH---HHHHHHHHHTTCTTTEEEEESCGGGCC-------C
T ss_pred CCCCEEEEccCccCHHHHh-cc--C-CCE--EEEEECCHHHH---HHHHHHHHHcCCCCcEEEEECChHHhc-------C
Confidence 5788999988666666655 54 2 334 45666544433 247778776643233456666887653 6
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+||.|+.|.|+.+. .|+..+..+|+++|.+++.-+...
T Consensus 258 ~fD~Vi~dpP~~~~--------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 258 KGNRVIMNLPKFAH--------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CEEEEEECCTTTGG--------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CCcEEEECCcHhHH--------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 79999999998652 566678889999999988766544
No 159
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=96.40 E-value=0.011 Score=47.53 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
....+||-||=|.=.++..|++..+ ..+ .|+.|..++..+ .+.+++.... ..++. +..-|+..+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~--- 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF-FEQ--ITGVDVSYRSLE---IAQERLDRLRLPRNQWERLQ-LIQGALTYQD--- 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT-CSE--EEEEESCHHHHH---HHHHHHTTCCCCHHHHTTEE-EEECCTTSCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC-CCE--EEEEECCHHHHH---HHHHHHHHhcCCcccCcceE-EEeCCccccc---
Confidence 4678999999777677777888653 234 455564343331 3444443211 01233 3444665432
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
....+||.|+.+..-.-. ...-+..+++.+..+|++||.+.++..
T Consensus 98 -~~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 98 -KRFHGYDAATVIEVIEHL--------------DLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp -GGGCSCSEEEEESCGGGC--------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -ccCCCcCEEeeHHHHHcC--------------CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 344689999987643211 223456788889999999997776644
No 160
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.40 E-value=0.0029 Score=51.17 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--CCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--PTL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~~~ 93 (214)
.....+||-||=|.=.++..|++.++....+ |+.|..++..+ .+.++++...-.+...+..-|+.+.-.. ...
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 136 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTL--ITCDVDEKSTA---LAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAG 136 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTT
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEE--EEEeCCHHHHH---HHHHHHHHCCCCCceEEEeCCHHHHHHHhhhcc
Confidence 4467899999977767777788887533444 55564444331 4666666554333234445566443110 001
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.|.. -...+++.+..+|++||.+.+.
T Consensus 137 ~~~~fD~v~~~~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 137 QAWQYDLIYIDADKA-------------------NTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp CTTCEEEEEECSCGG-------------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccEEEECCCHH-------------------HHHHHHHHHHHhcCCCcEEEEe
Confidence 126899999887621 1234778888999999999874
No 161
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=96.38 E-value=0.0068 Score=49.73 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=57.9
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--- 154 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--- 154 (214)
-+...|++++...+.....+||.||.++-.... ..+..-+..+++.+..+|+|||.+.++...+.
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA------------CPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH------------CSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred eEEEeeeccCCCCCccccCCccEEEEhhhhhhh------------cCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 466778887653222334789999988642210 01233456788889999999999877643221
Q ss_pred ----------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ----------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ----------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+++.-.+..+..++||.+.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 122336778889999999886544
No 162
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=96.37 E-value=0.018 Score=45.70 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ...+ ++.|..++..+ .+.+|++.+.- ++. +..-|+.++. .
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v--~~vD~~~~~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~-------~ 111 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G-AKEV--ICVEVDKEAVD---VLIENLGEFKG-KFK-VFIGDVSEFN-------S 111 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T-CSEE--EEEESCHHHHH---HHHHHTGGGTT-SEE-EEESCGGGCC-------C
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C-CCEE--EEEECCHHHHH---HHHHHHHHcCC-CEE-EEECchHHcC-------C
Confidence 36789999996655566667775 2 2234 45564443331 35555544322 333 4445777753 3
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
.||.|+.|.|..-... .+...|++.+..+| |.+.++. ...|...-.+...+++.|+.+....
T Consensus 112 ~~D~v~~~~p~~~~~~--------------~~~~~~l~~~~~~l---~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 112 RVDIVIMNPPFGSQRK--------------HADRPFLLKAFEIS---DVVYSIH-LAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CCSEEEECCCCSSSST--------------TTTHHHHHHHHHHC---SEEEEEE-ECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEcCCCccccC--------------CchHHHHHHHHHhc---CcEEEEE-eCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 7999999999543211 11234456666666 5555543 1122233446667788898776544
Q ss_pred c
Q 041136 177 E 177 (214)
Q Consensus 177 ~ 177 (214)
+
T Consensus 174 ~ 174 (207)
T 1wy7_A 174 T 174 (207)
T ss_dssp E
T ss_pred E
Confidence 3
No 163
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=96.37 E-value=0.0058 Score=48.06 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCC--------CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSA--------TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~--------~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
..++.+||-+|=|.=.++..|++.++.. ..|++.-.+... + + .++.++-..|++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~--------~--~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------P--------L--EGATFLCPADVTDP 83 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------C--------C--TTCEEECSCCTTSH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------c--------C--CCCeEEEeccCCCH
Confidence 4568899999977666777799887532 455555444310 0 0 23444314555543
Q ss_pred CCC----CCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 88 DRH----PTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 88 ~~~----~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
... ..+...+||.|+.|+ ||..+. ...+ ......++..+++.+..+|++||.+.++...+
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGF---RDLD---HDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSC---HHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCC---cccC---HHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 210 002345799999998 454321 0000 11234567899999999999999998886544
No 164
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.024 Score=47.95 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCC--CC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHP--TL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~--~~ 93 (214)
.+..+||-||=|.=.++..|++.+....+++ +.|..+...+ .+.++++.. .......+...|+.++.-.. .+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQII--GSDLSATMIK---TAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEE--EEESCHHHHH---HHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEE--EEeCCHHHHH---HHHHHHHhccCCCCceEEEEcCHHhCCccccccc
Confidence 4788999999777777888998764444555 4554343331 355565554 11223445566887765211 12
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
...+||.|+.+..-.-. -...+++.+..+|++||.+.|
T Consensus 110 ~~~~fD~V~~~~~l~~~-----------------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 110 DKQKIDMITAVECAHWF-----------------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TSSCEEEEEEESCGGGS-----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCeeEEeHhhHHHHh-----------------CHHHHHHHHHHhcCCCcEEEE
Confidence 23789999998642211 234678889999999999977
No 165
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=96.33 E-value=0.022 Score=50.13 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.+. ++.+|.+|. +++.+ .+.++++.....+-.-+..-|+.+... .+. .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~p-~ 247 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK---EVEVTIVDL-PQQLE---MMRKQTAGLSGSERIHGHGANLLDRDV--PFP-T 247 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST---TCEEEEEEC-HHHHH---HHHHHHTTCTTGGGEEEEECCCCSSSC--CCC-C
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeC-HHHHH---HHHHHHHhcCcccceEEEEccccccCC--CCC-C
Confidence 5678999999777777778999874 457888888 44432 355554332111123344556654320 122 5
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+...--.-.. .+-...+++.+...|+|||.+.|.
T Consensus 248 ~~D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 248 GFDAVWMSQFLDCFS--------------EEEVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp CCSEEEEESCSTTSC--------------HHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CcCEEEEechhhhCC--------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 799999876443321 112345677888999999999774
No 166
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=96.32 E-value=0.0066 Score=49.02 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=68.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~ 93 (214)
......+||-||=|.=.++..|++.++.+..+ |+.|..++..+ .+.+|++...-.+...+..-|+.+.-.. +.-
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 129 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRV--VTLEASEKHAD---IARSNIERANLNDRVEVRTGLALDSLQQIENE 129 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence 34567899999977667777788887533444 55564343331 4666766554333344555577543110 000
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.|+. -...+|..+..+|++||.+.+.
T Consensus 130 ~~~~fD~v~~d~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 130 KYEPFDFIFIDADKQ-------------------NNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp TCCCCSEEEECSCGG-------------------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCCcCEEEEcCCcH-------------------HHHHHHHHHHHhcCCCcEEEEe
Confidence 115699999887621 1236788889999999977664
No 167
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=96.32 E-value=0.028 Score=47.78 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH-----HHHh-----CCCEEEEcccccc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ-----SLWS-----RGCLVLHGVNVHT 86 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~-----~L~~-----~g~~Vl~~VDAt~ 86 (214)
..+.+||-||=|.=.++.+|++. + ...++++-+-+.+.+. .+..|++ ...- .++.+. ..|..+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~----~a~~n~~~N~~~~~~~~~~~~~~v~~~-~~~~~~ 150 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILN----SLESNIREHTANSCSSETVKRASPKVV-PYRWGD 150 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHH----HHHHHHHTTCC----------CCCEEE-ECCTTS
T ss_pred cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHH----HHHHHHHHhhhhhcccccCCCCCeEEE-EecCCC
Confidence 46789999996655566667764 3 2366666551223332 4666663 2211 123333 222222
Q ss_pred CCCCC--CCCCCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccC---C--CCEEEEEecCCCC---
Q 041136 87 MDRHP--TLSQMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLG---E--GGEVHVTLRDDHP--- 155 (214)
Q Consensus 87 L~~~~--~~~~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~---~--~G~i~VTl~~~~P--- 155 (214)
..... .+...+||.||. +-+|.- ..+..+++.+..+|+ + +|.+.|......|
T Consensus 151 ~~~~~~~~~~~~~fD~Ii~~dvl~~~-----------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~ 213 (281)
T 3bzb_A 151 SPDSLQRCTGLQRFQVVLLADLLSFH-----------------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLA 213 (281)
T ss_dssp CTHHHHHHHSCSSBSEEEEESCCSCG-----------------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC------
T ss_pred ccHHHHhhccCCCCCEEEEeCcccCh-----------------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccc
Confidence 11000 002467999997 444431 124456677888999 9 9998887655443
Q ss_pred CCcccHhhHHHhcC-CEEEEEec
Q 041136 156 YNQWNVMGLADKLG-LVLKEKVE 177 (214)
Q Consensus 156 y~~W~i~~lA~~~g-l~l~~~~~ 177 (214)
.....+..++.+.| |.+.....
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEEEC
T ss_pred hhHHHHHHHHHhcCCEEEEEecc
Confidence 22455667888899 99887643
No 168
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=96.26 E-value=0.045 Score=46.11 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=67.6
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~ 92 (214)
....+..+||-||=|.=.++..|++.++.+..+++ .|..+...+ .+.+++.. .+.. -+..-|+.++.
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~g--vD~s~~~~~---~a~~~~~~---~~~~v~~~~~d~~~~~---- 85 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTG--IDSGETLLA---EARELFRL---LPYDSEFLEGDATEIE---- 85 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEE--EESCHHHHH---HHHHHHHS---SSSEEEEEESCTTTCC----
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHh---cCCceEEEEcchhhcC----
Confidence 35567899999997777788889888754445555 453333321 24444332 3322 23445666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+ ..+||.|+.+....... + ...+++.+..+|+|||.+.+.-
T Consensus 86 ~-~~~fD~v~~~~~l~~~~----~------------~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 86 L-NDKYDIAICHAFLLHMT----T------------PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp C-SSCEEEEEEESCGGGCS----S------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCCeeEEEECChhhcCC----C------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 2 35899999987532211 0 1367788889999999997663
No 169
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=96.24 E-value=0.012 Score=52.46 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+...+.+||-||-|.=.++..+++. + ...++|+-.. +.+. .+.++++...-.+...+..-|+.++.-
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s--~~~~----~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 126 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT--KMAD----HARALVKANNLDHIVEVIEGSVEDISL---- 126 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS--TTHH----HHHHHHHHTTCTTTEEEEESCGGGCCC----
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH--HHHH----HHHHHHHHcCCCCeEEEEECchhhcCc----
Confidence 34567899999996665566667775 3 3366666554 3322 355666554433445566678887652
Q ss_pred CCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ++||.||.+.. |... +...+..+++.+..+|++||.+.+.
T Consensus 127 ~-~~~D~Iv~~~~~~~l~--------------~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 127 P-EKVDVIISEWMGYFLL--------------RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp S-SCEEEEEECCCBTTBT--------------TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred C-CcceEEEEcChhhccc--------------chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 2 78999999884 4332 1224566778888999999997543
No 170
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=96.24 E-value=0.014 Score=51.00 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.+...+..-|+.++. +..
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s--~~~~----~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~ 103 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS--SIIE----MAKELVELNGFSDKITLLRGKLEDVH----LPF 103 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS--THHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CSS
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH--HHHH----HHHHHHHHcCCCCCEEEEECchhhcc----CCC
Confidence 346789999996665556667765 3 3467776554 2222 36666655433233445566777663 334
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
.+||.||.+.+..+.. +...+..++..+..+|++||.+.
T Consensus 104 ~~~D~Ivs~~~~~~l~-------------~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLL-------------YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBS-------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhhcc-------------cHHHHHHHHHHHHhhcCCCeEEE
Confidence 6899999998744321 12245567788889999999985
No 171
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=96.19 E-value=0.036 Score=43.64 Aligned_cols=126 Identities=12% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH---- 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~---- 90 (214)
..+..+||-||=|.=.++..|++.++. ...|+|.-+.... . ..++.++. -|++++...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~------------~~~v~~~~-~d~~~~~~~~~~~ 82 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----P------------IPNVYFIQ-GEIGKDNMNNIKN 82 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----C------------CTTCEEEE-CCTTTTSSCCC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----C------------CCCceEEE-ccccchhhhhhcc
Confidence 456789999997776777779988752 3456665444411 0 12455443 466654310
Q ss_pred -C----------------CCCCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 91 -P----------------TLSQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 91 -~----------------~~~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+ .+....||.|+.|.+ |..+. ...+ .....+++...++.+..+|++||.+.++...
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~---~~~d---~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN---KIDD---HLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSC---HHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC---cccC---HHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 0 034468999999974 43321 1111 1223456778999999999999999887654
Q ss_pred CCCCCcccHhhHHH
Q 041136 153 DHPYNQWNVMGLAD 166 (214)
Q Consensus 153 ~~Py~~W~i~~lA~ 166 (214)
+. +.+.+.....
T Consensus 157 ~~--~~~~l~~~l~ 168 (201)
T 2plw_A 157 GS--QTNNLKTYLK 168 (201)
T ss_dssp ST--THHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 32 3444544443
No 172
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.17 E-value=0.015 Score=47.05 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhC----CCCcEEEeecCChHHHHhcCccHHHHHHHHHh----CCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFG----SATNMVASSLDSERTLKTKHWTSQAHLQSLWS----RGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~----~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~----~g~~Vl~~VDAt~L 87 (214)
..+..+||-||-|.=.++..|++..+ +...++ +.|..+++.+ .+.+|++.+.- .....+...|+.+.
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVI--GLERVKDLVN---FSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEE--EEESCHHHHH---HHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEE--EEeCCHHHHH---HHHHHHHHcCccccccCCEEEEECChHhc
Confidence 45678999999777667777888765 333454 4554444442 46667666531 12233445577663
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
.........+||.|+.+.+.... +..+..+|+++|.+.+++-.+
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~~----------------------~~~~~~~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASEL----------------------PEILVDLLAENGKLIIPIEED 196 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSSC----------------------CHHHHHHEEEEEEEEEEEEET
T ss_pred ccccCccCCCcCEEEECCchHHH----------------------HHHHHHhcCCCcEEEEEEccC
Confidence 20000224679999988765321 244678899999998887653
No 173
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.14 E-value=0.11 Score=47.25 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|=|.=.|++.||+.. ..+ ++.|..++..+ .|.+|++... .. ..+..-|+.++.. .
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~---~~V--~gvD~s~~ai~---~A~~n~~~ng-l~-v~~~~~d~~~~~~-----~ 352 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG---FNV--KGFDSNEFAIE---MARRNVEINN-VD-AEFEVASDREVSV-----K 352 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT---CEE--EEEESCHHHHH---HHHHHHHHHT-CC-EEEEECCTTTCCC-----T
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC---CEE--EEEECCHHHHH---HHHHHHHHcC-Cc-EEEEECChHHcCc-----c
Confidence 3567899999855555555577752 344 45564444432 5777776543 23 4455567776532 1
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~ 174 (214)
+||.||.|.|..|.. ..++... . .|+++|.+.|+- .|.. ..++..+ . |.+.+
T Consensus 353 -~fD~Vv~dPPr~g~~--------------~~~~~~l----~-~l~p~givyvsc---~p~tlarDl~~l---~-y~l~~ 405 (425)
T 2jjq_A 353 -GFDTVIVDPPRAGLH--------------PRLVKRL----N-REKPGVIVYVSC---NPETFARDVKML---D-YRIDE 405 (425)
T ss_dssp -TCSEEEECCCTTCSC--------------HHHHHHH----H-HHCCSEEEEEES---CHHHHHHHHHHS---S-CCEEE
T ss_pred -CCCEEEEcCCccchH--------------HHHHHHH----H-hcCCCcEEEEEC---ChHHHHhHHhhC---e-EEEEE
Confidence 799999999987642 1122211 1 279999888872 2211 1222222 2 88999
Q ss_pred EecCCCCCCCCCccc
Q 041136 175 KVEFLKQDFPGYHNK 189 (214)
Q Consensus 175 ~~~F~~~~yPgY~~~ 189 (214)
..+|| +||.=.|-
T Consensus 406 ~~~~D--mFP~T~Hv 418 (425)
T 2jjq_A 406 IVALD--MFPHTPHV 418 (425)
T ss_dssp EEEEC--CSTTSSCC
T ss_pred EEEEC--cCCCCceE
Confidence 99998 88876663
No 174
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=96.11 E-value=0.013 Score=48.20 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..||+... ... .|+.|..++..+ .+.++++...-.+...+..-|+.+.-.. .+ .
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~ 140 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISD-DIH--VTTIERNETMIQ---YAKQNLATYHFENQVRIIEGNALEQFEN-VN-D 140 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCT-TCE--EEEEECCHHHHH---HHHHHHHHTTCTTTEEEEESCGGGCHHH-HT-T
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCC-CCE--EEEEECCHHHHH---HHHHHHHHcCCCCcEEEEECCHHHHHHh-hc-c
Confidence 34678999999666566666887442 334 455665444332 4666666554222344555577653210 11 4
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+||.|+.+.+... +..||+.+..+|++||.+.+
T Consensus 141 ~~fD~V~~~~~~~~-------------------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 141 KVYDMIFIDAAKAQ-------------------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp SCEEEEEEETTSSS-------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred CCccEEEEcCcHHH-------------------HHHHHHHHHHhcCCCeEEEE
Confidence 67999998854211 33488889999999999877
No 175
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=96.06 E-value=0.015 Score=49.64 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHH--hHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKR--HKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~--n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+..- ..++. ..+-+..+|+.+..+|++||.+.|.
T Consensus 174 ~~~~fD~I~~~~vl------------~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 174 QTPEYDVVLCLSLT------------KWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp CCCCEEEEEEESCH------------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEEChHH------------HHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45789999986431 01111 3457888999999999999999886
No 176
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=96.03 E-value=0.0057 Score=49.51 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
......+||.||-|.=.++..|++.++....+++.-.+. +.. ..+.++++........-++.-|+.+.-. .+.
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~---~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~ 138 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPP---ELGRPLWRQAEAEHKIDLRLKPALETLD--ELL 138 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHH---HHHHHHHHHTTCTTTEEEEESCHHHHHH--HHH
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHH---HHHHHHHHHCCCCCeEEEEEcCHHHHHH--HHH
Confidence 345678999999877677777888775444565554443 222 1355555543221223333446543211 011
Q ss_pred ----CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 ----QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ----~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.|... ...+++.+..+|++||.+.+.
T Consensus 139 ~~~~~~~~D~v~~d~~~~~-------------------~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 139 AAGEAGTFDVAVVDADKEN-------------------CSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HTTCTTCEEEEEECSCSTT-------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCccEEEECCCHHH-------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 167999999877211 235678888999999998774
No 177
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.00 E-value=0.01 Score=57.66 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=85.3
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRH 90 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~ 90 (214)
++..+..+++||=+|=|.=.||..+++. + +.. +|+.|..+...+ .+.+|++.+.-. ....++.-|+.+.-.
T Consensus 533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~--V~aVD~s~~al~---~a~~N~~~ngl~~~~v~~i~~D~~~~l~- 604 (703)
T 3v97_A 533 MLGQMSKGKDFLNLFSYTGSATVHAGLG-G-ARS--TTTVDMSRTYLE---WAERNLRLNGLTGRAHRLIQADCLAWLR- 604 (703)
T ss_dssp HHHHHCTTCEEEEESCTTCHHHHHHHHT-T-CSE--EEEEESCHHHHH---HHHHHHHHTTCCSTTEEEEESCHHHHHH-
T ss_pred HHHHhcCCCcEEEeeechhHHHHHHHHC-C-CCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEEEecCHHHHHH-
Confidence 4455668899999985444455556652 2 223 556674444332 477887765422 134556677776321
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
....+||.||.|.|..+......+ ..........++..|..+|++||.+.++.+.... .. + .+...+.|+
T Consensus 605 --~~~~~fD~Ii~DPP~f~~~~~~~~-----~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~-~~-~-~~~l~~~g~ 674 (703)
T 3v97_A 605 --EANEQFDLIFIDPPTFSNSKRMED-----AFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF-RM-D-LDGLAKLGL 674 (703)
T ss_dssp --HCCCCEEEEEECCCSBC------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC-CC-C-HHHHHHTTE
T ss_pred --hcCCCccEEEECCccccCCccchh-----HHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cc-C-HHHHHHcCC
Confidence 124689999999998764211100 0113456777888999999999999877554221 11 1 344556777
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
.+..
T Consensus 675 ~~~~ 678 (703)
T 3v97_A 675 KAQE 678 (703)
T ss_dssp EEEE
T ss_pred ceee
Confidence 7544
No 178
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=95.99 E-value=0.012 Score=48.63 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=34.6
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.|.|.........+ ...+.+..|++.+..+|++||.+.++
T Consensus 166 ~~~fD~Iv~npp~~~~~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 166 GSAPDVVLTDLPYGERTHWEGQ-------VPGQPVAGLLRSLASALPAHAVIAVT 213 (250)
T ss_dssp TCCCSEEEEECCGGGSSSSSSC-------CCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCceEEEeCCCeecccccccc-------ccccHHHHHHHHHHHhcCCCcEEEEe
Confidence 3479999999997654210000 12357788899999999999999884
No 179
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=95.98 E-value=0.015 Score=51.69 Aligned_cols=138 Identities=10% Similarity=-0.011 Sum_probs=82.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||=+|=|.=.++..+|.... ...|+ +.|..+...+ .|..|++...-.+...+..-|+.++.. ..
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~--g~Dis~~~l~---~A~~n~~~~gl~~~i~~~~~D~~~~~~----~~ 284 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY-SGEII--GIEKYRKHLI---GAEMNALAAGVLDKIKFIQGDATQLSQ----YV 284 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEE--EEESCHHHHH---HHHHHHHHTTCGGGCEEEECCGGGGGG----TC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEE--EEeCCHHHHH---HHHHHHHHcCCCCceEEEECChhhCCc----cc
Confidence 45678899887554455555666532 22454 5554344332 467776654211223455668888752 34
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.||.|.|.--. .+.. .....|...|++.+..+| +|.+ .|+ .+.-.+..+..+.|+.+.+
T Consensus 285 ~~fD~Ii~npPyg~r-~~~~-------~~~~~ly~~~~~~l~r~l--~g~~~~i~------~~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 285 DSVDFAISNLPYGLK-IGKK-------SMIPDLYMKFFNELAKVL--EKRGVFIT------TEKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp SCEEEEEEECCCC--------------CCHHHHHHHHHHHHHHHE--EEEEEEEE------SCHHHHHHHHHHTTEEEEE
T ss_pred CCcCEEEECCCCCcc-cCcc-------hhHHHHHHHHHHHHHHHc--CCeEEEEE------CCHHHHHHHHHHcCCEEEE
Confidence 679999999996321 1100 113457788999999988 4554 555 1344456677788999888
Q ss_pred EecCC
Q 041136 175 KVEFL 179 (214)
Q Consensus 175 ~~~F~ 179 (214)
..++.
T Consensus 349 ~~~~~ 353 (373)
T 3tm4_A 349 HRVIG 353 (373)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
No 180
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=95.97 E-value=0.038 Score=48.14 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEec------CchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 15 HYTNNQRILLVGE------GDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 15 ~~~~~~~ILlVGe------GnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
...++.+||=+|= |.=| .-+++..+....|+|.=+... + .++.+...-|++++.
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------------v--~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------------V--SDADSTLIGDCATVH 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------------B--CSSSEEEESCGGGCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------------C--CCCEEEEECccccCC
Confidence 4567889999999 2233 234555553345665544432 1 256551344777754
Q ss_pred CCCCCCCCcccEEEEcCCCC--CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH
Q 041136 89 RHPTLSQMKFDVIIFNFPHA--GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD 166 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~--G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~ 166 (214)
- ..+||.|+.|.++. |... .+.. ....++...++.+..+|++||.+.+....+. ..-.+..+.+
T Consensus 120 ~-----~~~fD~Vvsn~~~~~~g~~~--~d~~-----~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--~~~~l~~~l~ 185 (290)
T 2xyq_A 120 T-----ANKWDLIISDMYDPRTKHVT--KEND-----SKEGFFTYLCGFIKQKLALGGSIAVKITEHS--WNADLYKLMG 185 (290)
T ss_dssp C-----SSCEEEEEECCCCCC---CC--SCCC-----CCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--CCHHHHHHHT
T ss_pred c-----cCcccEEEEcCCcccccccc--cccc-----chHHHHHHHHHHHHHhcCCCcEEEEEEeccC--CHHHHHHHHH
Confidence 2 25799999997533 3221 1110 1234677889999999999999988654433 2225666777
Q ss_pred hcCCEEEEEe
Q 041136 167 KLGLVLKEKV 176 (214)
Q Consensus 167 ~~gl~l~~~~ 176 (214)
+.|+...+..
T Consensus 186 ~~GF~~v~~~ 195 (290)
T 2xyq_A 186 HFSWWTAFVT 195 (290)
T ss_dssp TEEEEEEEEE
T ss_pred HcCCcEEEEE
Confidence 7777654443
No 181
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=95.96 E-value=0.034 Score=47.07 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCCCeEEEEe--cCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEE-EccccccCCCC
Q 041136 17 TNNQRILLVG--EGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVL-HGVNVHTMDRH 90 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl-~~VDAt~L~~~ 90 (214)
.++.+||-|| .|.++.. ..|+..+ +...+..|+.|..+++.+ .+.+.+...... ++.+. ...|+..+...
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~---~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIA---KYKELVAKTSNLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHH---HHHHHHHTCSSCTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHH---HHHHHHHhccCCCcceEEEEecchhhhhhh
Confidence 4567999999 6666543 2333333 234445689996666553 244443321111 22322 23444433210
Q ss_pred --CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-C------------
Q 041136 91 --PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-P------------ 155 (214)
Q Consensus 91 --~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-P------------ 155 (214)
..+...+||.|+.++=-.-.. =+..+++.+..+|+|||.+.|...... +
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~----------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVK----------------DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCS----------------CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS
T ss_pred hccccCCCceeEEEEeeeeeecC----------------CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhc
Confidence 013457899999875432221 123567778899999999987643221 0
Q ss_pred --------CCcccHhhHHHhcCCEEEE
Q 041136 156 --------YNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 156 --------y~~W~i~~lA~~~gl~l~~ 174 (214)
++.=.+..+..++||....
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 191 PQDDLCQYITSDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHTCCEEE
T ss_pred cCCCcccCCCHHHHHHHHHHCCCceEE
Confidence 1112356778889997765
No 182
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=95.93 E-value=0.022 Score=45.68 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||-|.=.++..|++.++....+ |+.|..++..+ .+.+|++...-.+..-++.-|+.++-. .+.
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~- 125 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRV--VMIDPDRDNVE---HARRMLHDNGLIDRVELQVGDPLGIAA--GQR- 125 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHSGGGGEEEEESCHHHHHT--TCC-
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHCCCCceEEEEEecHHHHhc--cCC-
Confidence 3467899999977666677788877433455 45564444332 466676654322223344457765321 122
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ||.|+.+.+.. -...+++.+..+|++||.+.+.
T Consensus 126 ~-fD~v~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 D-IDILFMDCDVF-------------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp S-EEEEEEETTTS-------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCEEEEcCChh-------------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 4 99999985421 1235778889999999998773
No 183
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=95.89 E-value=0.027 Score=47.15 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=65.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||.||-|.=..+..|++.+..+..|++ .|..++.. ..+.+|++...-....-++.-||.++-. .+
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~s~~~~---~~a~~~~~~~g~~~~i~~~~gda~~~l~--~l~~ 149 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILA--MDINKENY---ELGLPVIKKAGVDHKIDFREGPALPVLD--EMIK 149 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEE--EESCCHHH---HHHHHHHHHTTCGGGEEEEESCHHHHHH--HHHH
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEE--EECCHHHH---HHHHHHHHHcCCCCCeEEEECCHHHHHH--HHHh
Confidence 356789999997776677779988754445544 55433333 1356666553211112334446654311 11
Q ss_pred ---CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 ---SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+.+.. ....+|+.+..+|++||.|.+.
T Consensus 150 ~~~~~~~fD~V~~d~~~~-------------------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 150 DEKNHGSYDFIFVDADKD-------------------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp SGGGTTCBSEEEECSCST-------------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred ccCCCCCEEEEEEcCchH-------------------HHHHHHHHHHHhCCCCeEEEEe
Confidence 146799999885421 1235777888999999999774
No 184
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=95.82 E-value=0.095 Score=41.69 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||.||=|.=.++..|++..++...++ +.|..++..+ .+.+++..+...++ .+...|+... ...
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~v-~~~~~d~~~~----~~~ 143 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV--SIERIPELAE---KAERTLRKLGYDNV-IVIVGDGTLG----YEP 143 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE--EEESCHHHHH---HHHHHHHHHTCTTE-EEEESCGGGC----CGG
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEE--EEeCCHHHHH---HHHHHHHHcCCCCe-EEEECCcccC----CCC
Confidence 456788999999887777777888875434555 4554444432 35566655432233 3344465321 112
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...||.|+.+.+..... ..+..+|+++|.+.++...+
T Consensus 144 ~~~fD~v~~~~~~~~~~----------------------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP----------------------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GCCEEEEEESSBBSSCC----------------------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCeeEEEECCchHHHH----------------------HHHHHHcCCCcEEEEEECCC
Confidence 46799999997654321 25678999999998886543
No 185
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=95.81 E-value=0.0051 Score=50.41 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~ 95 (214)
....+||-||=|.=.++..|++.. .. ..|+.|..+++.+ .+.++.+ ..|.. .+...|+.++.. .+..
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~--~v~gvD~s~~~l~---~a~~~~~---~~~~~v~~~~~d~~~~~~--~~~~ 126 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP--ID--EHWIIECNDGVFQ---RLRDWAP---RQTHKVIPLKGLWEDVAP--TLPD 126 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EE--EEEEEECCHHHHH---HHHHHGG---GCSSEEEEEESCHHHHGG--GSCT
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC--CC--eEEEEcCCHHHHH---HHHHHHH---hcCCCeEEEecCHHHhhc--ccCC
Confidence 467899999966555666675432 12 4456775554442 2444332 33332 344557776521 2456
Q ss_pred CcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+||.|+. .|+..-. ..+......+++.+..+|+|||.+.+.
T Consensus 127 ~~fD~V~~d~~~~~~~------------~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 127 GHFDGILYDTYPLSEE------------TWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TCEEEEEECCCCCBGG------------GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CceEEEEECCcccchh------------hhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999 5654111 013445677899999999999998755
No 186
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=95.75 E-value=0.057 Score=46.59 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||=|.=.++..|++..+....++++-++ ++..+ .+.++++.+...++ .+..-|+.++. ..
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~g~~~v-~~~~~d~~~~~----~~ 141 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICE---IAKRNVERLGIENV-IFVCGDGYYGV----PE 141 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHTTCCSE-EEEESCGGGCC----GG
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCe-EEEECChhhcc----cc
Confidence 45678899999977666777788876422345554443 33331 36666655433333 34455776632 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..+||.|+.+.|..... ..+..+|+|||.+.|..
T Consensus 142 ~~~fD~Iv~~~~~~~~~----------------------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP----------------------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCC----------------------HHHHHHEEEEEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHH----------------------HHHHHhcCCCcEEEEEE
Confidence 45799999998764431 23566899999998884
No 187
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=95.74 E-value=0.027 Score=49.47 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.+..-+...|+.++. + ..
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s--~~~~----~a~~~~~~~~l~~~v~~~~~d~~~~~----~-~~ 115 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAS--TMAQ----HAEVLVKSNNLTDRIVVIPGKVEEVS----L-PE 115 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECS--THHH----HHHHHHHHTTCTTTEEEEESCTTTCC----C-SS
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCH--HHHH----HHHHHHHHcCCCCcEEEEEcchhhCC----C-CC
Confidence 46789999997766666667775 2 3467776654 2322 35556654432123444556777653 2 25
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.||.+.+..... +. .+...+..+..+|+++|.+.++
T Consensus 116 ~~D~Ivs~~~~~~~~-------------~~-~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 116 QVDIIISEPMGYMLF-------------NE-RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CEEEEEECCCBTTBT-------------TT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred ceeEEEEeCchhcCC-------------hH-HHHHHHHHHHhhcCCCeEEEEe
Confidence 799999997743221 01 1234455688999999998654
No 188
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=95.71 E-value=0.014 Score=48.73 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||-||=|.=..+..||+.++.+..|++.-.+. +.. ..+.+|++.+.-.+..-+..-||.++-. .+
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~--~~~---~~a~~~~~~~g~~~~i~~~~gda~~~l~--~~~~ 130 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINE--GWT---KHAHPYWREAKQEHKIKLRLGPALDTLH--SLLN 130 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCC--SSC---CCSHHHHHHTTCTTTEEEEESCHHHHHH--HHHH
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCH--HHH---HHHHHHHHHcCCCCcEEEEEcCHHHHHH--HHhh
Confidence 45678999999777667777998875444555554443 222 3577777765433233444456655321 11
Q ss_pred --CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 --SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 --~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.++. + ...+|+.+..+|++||.|.+.
T Consensus 131 ~~~~~~fD~V~~d~~~~-----------~--------~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 131 EGGEHQFDFIFIDADKT-----------N--------YLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHCSSCEEEEEEESCGG-----------G--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCEeEEEEcCChH-----------H--------hHHHHHHHHHhcCCCeEEEEE
Confidence 136799999986621 0 123788889999999999873
No 189
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=95.66 E-value=0.048 Score=44.19 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC---CCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS---ATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~---~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L 87 (214)
..++.+||-||-|.=.++..|++..+. ......++.|..+++.+ .+.++++.+. ..++.+ ..-|+.+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~---~a~~~~~~~~~~~~~~~~v~~-~~~d~~~~ 157 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR---RSKANLNTDDRSMLDSGQLLI-VEGDGRKG 157 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHH---HHHHHHHHHHHHHHHHTSEEE-EESCGGGC
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHH---HHHHHHHhcCccccCCCceEE-EECCcccC
Confidence 456789999997776677778886642 00123455665454442 4666666543 334444 44566651
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
. .....||.|+.+.+.... ...+..+|++||.+.+++..
T Consensus 158 --~--~~~~~fD~I~~~~~~~~~----------------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 158 --Y--PPNAPYNAIHVGAAAPDT----------------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp --C--GGGCSEEEEEECSCBSSC----------------------CHHHHHTEEEEEEEEEEESC
T ss_pred --C--CcCCCccEEEECCchHHH----------------------HHHHHHHhcCCCEEEEEEec
Confidence 1 123679999998765321 13467889999999998765
No 190
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=95.64 E-value=0.015 Score=46.87 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=73.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC--
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-- 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-- 92 (214)
.++++.+||=+|-|-=+++..|++. ...|+|.-+.... + ..++.++ ..|+++......
T Consensus 22 ~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~----------~~~v~~~-~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 22 VVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------E----------IAGVRFI-RCDIFKETIFDDID 81 (191)
T ss_dssp CSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------C----------CTTCEEE-ECCTTSSSHHHHHH
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------c----------CCCeEEE-EccccCHHHHHHHH
Confidence 3567899999996666666668776 3467777665421 1 1245544 457776432100
Q ss_pred --CC---CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 93 --LS---QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 93 --~~---~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+. ..+||.|+.|.|-.... .... . ......++...+..|..+|+|||.+.+.+..+.
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~g--~~~~--d-~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVSG--IPSR--D-HAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCCS--CHHH--H-HHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred HHhhcccCCcceEEecCCCcCCCC--Cccc--C-HHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 11 13899999998644321 1111 1 123456788899999999999999998887765
No 191
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=95.62 E-value=0.025 Score=46.43 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=66.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCC----
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRH---- 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~---- 90 (214)
.....+||-||-|.=.++..|++.++....+++ .|..++..+ .+.++++.....+...+...|+.+. ...
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILC--CDVSEEWTN---VARKYWKENGLENKIFLKLGSALETLQVLIDSK 132 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEE--EESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCS
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhc
Confidence 346789999998877777789988754445555 454343331 3555555432112133344465542 100
Q ss_pred ------CCCCC--CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 ------PTLSQ--MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ------~~~~~--~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+.. .+||.|+.+++. . -+..+|+.+..+|++||.+.+.
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~---------~----------~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADK---------E----------NYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCG---------G----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccCCCCCcCEEEEeCCH---------H----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 11222 679999988421 0 1236788899999999999876
No 192
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=95.60 E-value=0.074 Score=44.39 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++ . +..+ ++.|..+++.+ .+..++ .++.+. ..|+.++. +
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~-~--~~~v--~gvD~s~~~~~---~a~~~~-----~~~~~~-~~d~~~~~----~- 114 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQ-S--GAEV--LGTDNAATMIE---KARQNY-----PHLHFD-VADARNFR----V- 114 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHH-T--TCEE--EEEESCHHHHH---HHHHHC-----TTSCEE-ECCTTTCC----C-
T ss_pred CCCCCCEEEEecCCCCHHHHHHHh-C--CCeE--EEEECCHHHHH---HHHhhC-----CCCEEE-ECChhhCC----c-
Confidence 345778999999766666667887 2 3344 45564333331 122222 244443 44776653 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------- 155 (214)
..+||.|+.++...-.. + ...+++.+..+|+|||.+.++......
T Consensus 115 ~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVK----E------------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHN 178 (279)
T ss_dssp SSCEEEEEEESCGGGCS----C------------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCEEEEcchhhhCc----C------------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence 46899999987543221 0 235778889999999999876543111
Q ss_pred ------C---CcccHhhHHHhcCCEEEEEecC
Q 041136 156 ------Y---NQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 156 ------y---~~W~i~~lA~~~gl~l~~~~~F 178 (214)
. +.-.+..+.+++||.......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 179 PQALNPWYFPSIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp GGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCcCceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence 0 1112566788889988775544
No 193
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=95.57 E-value=0.033 Score=44.79 Aligned_cols=136 Identities=8% Similarity=0.008 Sum_probs=74.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH------------HhCCCEEEEccc
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL------------WSRGCLVLHGVN 83 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L------------~~~g~~Vl~~VD 83 (214)
.....+||-||=|.=-++..||+. + . -.|+.|..+++.+ .+.++.... ...++.+ ..-|
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~-g--~--~V~gvD~S~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~d 90 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ-G--Y--HVVGAELSEAAVE---RYFTERGEQPHITSQGDFKVYAAPGIEI-WCGD 90 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH-C--C--EEEEEEECHHHHH---HHHHHHCSCSEEEEETTEEEEECSSSEE-EEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC-C--C--eEEEEeCCHHHHH---HHHHHccCCcccccccccccccCCccEE-EECc
Confidence 357789999995544445558875 3 2 4667784343332 233322110 0123443 3457
Q ss_pred cccCCCCCCCCC-CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCE-EEEEecC------CCC
Q 041136 84 VHTMDRHPTLSQ-MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGE-VHVTLRD------DHP 155 (214)
Q Consensus 84 At~L~~~~~~~~-~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~-i~VTl~~------~~P 155 (214)
+.++. +.. .+||.|+.+.-..-. +......+++.+..+|+|||. +.+++.- +.|
T Consensus 91 ~~~l~----~~~~~~fD~v~~~~~l~~l--------------~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~ 152 (203)
T 1pjz_A 91 FFALT----ARDIGHCAAFYDRAAMIAL--------------PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPP 152 (203)
T ss_dssp CSSST----HHHHHSEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCC
T ss_pred cccCC----cccCCCEEEEEECcchhhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCC
Confidence 77664 222 679999975432211 223456788899999999999 4555432 333
Q ss_pred CC--cccHhhHHHhcCCEEEEEecCC
Q 041136 156 YN--QWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~--~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+. .-.+..+... |+.+......+
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCHHHHHHHhcC-CcEEEEecccc
Confidence 32 2234444444 88776654433
No 194
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=95.55 E-value=0.032 Score=45.56 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + .++ ++.|..++..+ .+.+++ . .......+...|+.++. +.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~-~-~~~~~~~~~~~d~~~~~----~~ 101 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-G--YRY--IALDADAAMLE---VFRQKI-A-GVDRKVQVVQADARAIP----LP 101 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-T--CEE--EEEESCHHHHH---HHHHHT-T-TSCTTEEEEESCTTSCC----SC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-C--CEE--EEEECCHHHHH---HHHHHh-h-ccCCceEEEEcccccCC----CC
Confidence 4567889999996665566667765 2 344 45564343331 233333 0 11122344555776653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...||.|+.++.-.-.. -...+++.+..+|++||.+.++..
T Consensus 102 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~ 142 (263)
T 2yqz_A 102 DESVHGVIVVHLWHLVP----------------DWPKVLAEAIRVLKPGGALLEGWD 142 (263)
T ss_dssp TTCEEEEEEESCGGGCT----------------THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECCchhhcC----------------CHHHHHHHHHHHCCCCcEEEEEec
Confidence 67899999986533221 024577888999999999988743
No 195
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=95.55 E-value=0.083 Score=41.75 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ...+ ++.|..++..+ .+.+|+. ++.++ .-|+.++. .
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v--~~vD~~~~~~~---~a~~~~~-----~~~~~-~~d~~~~~-------~ 109 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G-AESV--TAFDIDPDAIE---TAKRNCG-----GVNFM-VADVSEIS-------G 109 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T-BSEE--EEEESCHHHHH---HHHHHCT-----TSEEE-ECCGGGCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C-CCEE--EEEECCHHHHH---HHHHhcC-----CCEEE-ECcHHHCC-------C
Confidence 46789999996665666667765 3 2234 55564333331 3444443 45544 44777652 5
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||.|.|..-... .....|++.+..++ |.+.+... |.....+..++...| .+...
T Consensus 110 ~~D~v~~~~p~~~~~~--------------~~~~~~l~~~~~~~---g~~~~~~~---~~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 110 KYDTWIMNPPFGSVVK--------------HSDRAFIDKAFETS---MWIYSIGN---AKARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp CEEEEEECCCC---------------------CHHHHHHHHHHE---EEEEEEEE---GGGHHHHHHHHHHHE-EEEEE
T ss_pred CeeEEEECCCchhccC--------------chhHHHHHHHHHhc---CcEEEEEc---CchHHHHHHHHHHCC-CEEEE
Confidence 7999999999543210 11134566666666 55655542 323333556677777 65543
No 196
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=95.48 E-value=0.044 Score=43.49 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..| + ..+ .|+.|..++..+ .+.++. .++.+ ...|+.++. +...+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~-~~~--v~~vD~s~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~~~~~ 95 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----P-YPQ--KVGVEPSEAMLA---VGRRRA-----PEATW-VRAWGEALP----FPGES 95 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----C-CSE--EEEECCCHHHHH---HHHHHC-----TTSEE-ECCCTTSCC----SCSSC
T ss_pred CCCeEEEECCCCCHhHHhC----C-CCe--EEEEeCCHHHHH---HHHHhC-----CCcEE-EEcccccCC----CCCCc
Confidence 6789999986554555444 2 114 455665444332 233322 34554 344777653 45678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.|+.+....-.. -...+++.+..+|++||.+.|+..
T Consensus 96 fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 96 FDVVLLFTTLEFVE----------------DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp EEEEEEESCTTTCS----------------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcChhhhcC----------------CHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999986533221 123677888999999999988753
No 197
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=95.48 E-value=0.015 Score=48.11 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=66.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||.||-|.=..+..|++.++....++ +.|..++..+ .+.+|++...-.+...++.-||.++-. .+
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~--~iD~~~~~~~---~a~~~~~~~g~~~~i~~~~gda~~~l~--~l~~ 140 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKIT--AIDFDREAYE---IGLPFIRKAGVEHKINFIESDAMLALD--NLLQ 140 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEE--EEESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHHH--HHHH
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHH--HHHh
Confidence 45678999999777667777998875444554 4554444331 356666543211123344446654311 11
Q ss_pred ---CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 ---SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+.++. ....|++.+..+|++||.|.+.
T Consensus 141 ~~~~~~~fD~I~~d~~~~-------------------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 141 GQESEGSYDFGFVDADKP-------------------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp STTCTTCEEEEEECSCGG-------------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCCcCEEEECCchH-------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 146799999874320 1246788889999999998774
No 198
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=95.44 E-value=0.07 Score=45.48 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh------CCCEEEEccccccCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS------RGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~------~g~~Vl~~VDAt~L~~~ 90 (214)
.+..+||-||=|.=.++..|++.. ...+++ .|..++..+ .+.+++..... ....-+...|+.++.-.
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~g--vD~s~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 105 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGR--INKLVC--TDIADVSVK---QCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI 105 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTT--CSEEEE--EESCHHHHH---HHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST
T ss_pred CCCCEEEEECCCCcHHHHHHHhcC--CCEEEE--EeCCHHHHH---HHHHHHHHhhhcccccccceEEEEEecccccchh
Confidence 367799999966555566677632 335554 564343332 35555554421 11234455677776421
Q ss_pred CCCC--CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 91 PTLS--QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 91 ~~~~--~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+. ..+||.|+.++.-.-. -.+..-+..+++.+..+|+|||.+.++..
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYS------------FESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGG------------GGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhcccCCCCEEEEEEecchhhc------------cCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 1232 3589999998743211 01234466889999999999999988754
No 199
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=95.41 E-value=0.015 Score=51.60 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P--- 91 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~--- 91 (214)
..+||=+|=|.=.|++.||+.. ..+ ++.|..++..+ .+.+|++.+.-.++ -+..-||.++... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V--~gvd~~~~ai~---~a~~n~~~ng~~~v-~~~~~d~~~~~~~~~~~~~~~ 284 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRV--LATEIAKPSVA---AAQYNIAANHIDNV-QIIRMAAEEFTQAMNGVREFN 284 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEE--EEECCCHHHHH---HHHHHHHHTTCCSE-EEECCCSHHHHHHHSSCCCCT
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEE--EEEECCHHHHH---HHHHHHHHcCCCce-EEEECCHHHHHHHHhhccccc
Confidence 4679888744444444577642 244 45665444442 57778765432233 3455577654210 0
Q ss_pred -----CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHH
Q 041136 92 -----TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLA 165 (214)
Q Consensus 92 -----~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA 165 (214)
.+....||.||.|.|-.|.. .+ +.++|+++|.|.+.-|+ |.. .-++..+.
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~g~~--------------~~--------~~~~l~~~g~ivyvsc~--p~t~ard~~~l~ 340 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRSGLD--------------SE--------TEKMVQAYPRILYISCN--PETLCKNLETLS 340 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTTCCC--------------HH--------HHHHHTTSSEEEEEESC--HHHHHHHHHHHH
T ss_pred cccccccccCCCCEEEECcCccccH--------------HH--------HHHHHhCCCEEEEEECC--HHHHHHHHHHHh
Confidence 01113799999999987641 11 23344578888666554 322 22344454
Q ss_pred HhcCCEEEEEecCCCCCCCCCccc
Q 041136 166 DKLGLVLKEKVEFLKQDFPGYHNK 189 (214)
Q Consensus 166 ~~~gl~l~~~~~F~~~~yPgY~~~ 189 (214)
.||.+.+..+|| +||.=.|-
T Consensus 341 --~~y~~~~~~~~D--~FP~T~Hv 360 (369)
T 3bt7_A 341 --QTHKVERLALFD--QFPYTHHM 360 (369)
T ss_dssp --HHEEEEEEEEEC--CSTTSSCC
T ss_pred --hCcEEEEEEeec--cCCCCCcE
Confidence 269999999998 79876664
No 200
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=95.32 E-value=0.15 Score=40.39 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + .++++ .|..++..+ .+.+|++.+.-.+ ..+..-|+.+.. ..
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~-~--~~v~~--vD~~~~~~~---~a~~~~~~~~~~~-v~~~~~d~~~~~----~~ 140 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL-V--QHVCS--VERIKGLQW---QARRRLKNLDLHN-VSTRHGDGWQGW----QA 140 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH-S--SEEEE--EESCHHHHH---HHHHHHHHTTCCS-EEEEESCGGGCC----GG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEE--EecCHHHHH---HHHHHHHHcCCCc-eEEEECCcccCC----cc
Confidence 4567899999997766667778877 2 35555 454344332 3666666543223 334445666532 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..+||.|+.+.+..... + .+..+|++||.+.+++.+
T Consensus 141 ~~~~D~i~~~~~~~~~~----~------------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIP----T------------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCC----T------------------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhh----H------------------HHHHhcccCcEEEEEEcC
Confidence 56899999974432211 0 256789999999999776
No 201
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=95.31 E-value=0.043 Score=44.79 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.+. +..++++ |..+++.+ .+.++ ..++.+ ...|+.++. .
T Consensus 30 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~--D~s~~~~~---~a~~~-----~~~~~~-~~~d~~~~~-----~ 92 (259)
T 2p35_A 30 PLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGI--DSDDDMLE---KAADR-----LPNTNF-GKADLATWK-----P 92 (259)
T ss_dssp CCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEE--ESCHHHHH---HHHHH-----STTSEE-EECCTTTCC-----C
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEE--ECCHHHHH---HHHHh-----CCCcEE-EECChhhcC-----c
Confidence 346778999999777677777888873 3456555 53333321 12222 123443 445777654 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...||.|+.++.-.-.. -...+++.+..+|++||.+.++..
T Consensus 93 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 93 AQKADLLYANAVFQWVP----------------DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp SSCEEEEEEESCGGGST----------------THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCcCEEEEeCchhhCC----------------CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 46799999987543221 123577888999999999988753
No 202
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=95.23 E-value=0.15 Score=44.71 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.++.+|. +.+.+. +.+ + .++.+ ..-|+.+ . +..
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~~---a~~----~--~~v~~-~~~d~~~-~----~~~ 267 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYP---LIKGINFDL-PQVIEN---APP----L--SGIEH-VGGDMFA-S----VPQ 267 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----C--TTEEE-EECCTTT-C----CCC
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCC---CCeEEEeCh-HHHHHh---hhh----c--CCCEE-EeCCccc-C----CCC
Confidence 67789999999777677777998874 467888898 444421 111 1 23433 3346654 1 222
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.--.-.. ..-...+++.+..+|+|||.+.|.
T Consensus 268 --~D~v~~~~~lh~~~--------------d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 268 --GDAMILKAVCHNWS--------------DEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp --EEEEEEESSGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCEEEEecccccCC--------------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999987533221 112346778889999999998766
No 203
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=95.14 E-value=0.32 Score=40.15 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++ .+..+ |+.|..++..+ ..+......+...|+.++. +.
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v--~gvD~s~~~~~----------~a~~~~~~~~~~~d~~~~~----~~ 91 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALAN---QGLFV--YAVEPSIVMRQ----------QAVVHPQVEWFTGYAENLA----LP 91 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHT---TTCEE--EEECSCHHHHH----------SSCCCTTEEEECCCTTSCC----SC
T ss_pred CCCCCCEEEEEcCcccHHHHHHHh---CCCEE--EEEeCCHHHHH----------HHHhccCCEEEECchhhCC----CC
Confidence 446789999999777667777876 22344 55664443332 1111112334455776653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCCCCcc--------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHPYNQW-------------- 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~Py~~W-------------- 159 (214)
.++||.|+.++.-.... -...+++.+..+|+ ||.+.+.-.. ......|
T Consensus 92 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
T 3ege_A 92 DKSVDGVISILAIHHFS----------------HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALR 154 (261)
T ss_dssp TTCBSEEEEESCGGGCS----------------SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHT
T ss_pred CCCEeEEEEcchHhhcc----------------CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhh
Confidence 67899999987532211 12367788899999 9977555332 1111222
Q ss_pred ------cHhhHHHhcCCEEEEEecC
Q 041136 160 ------NVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 160 ------~i~~lA~~~gl~l~~~~~F 178 (214)
.+. +.+++||...+..++
T Consensus 155 ~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 155 FLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp SCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred hCCCHHHHH-HHHHcCCCceeEEEe
Confidence 144 788899977765554
No 204
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=95.13 E-value=0.052 Score=44.96 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=.++..|++. + .+ .|+.|..++..+ .+.++.. + .+...|+.++. +....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~gvD~s~~~l~---~a~~~~~-----~--~~~~~d~~~~~----~~~~~ 114 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-G--FE--VVLVDPSKEMLE---VAREKGV-----K--NVVEAKAEDLP----FPSGA 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-T--CE--EEEEESCHHHHH---HHHHHTC-----S--CEEECCTTSCC----SCTTC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-C--Ce--EEEEeCCHHHHH---HHHhhcC-----C--CEEECcHHHCC----CCCCC
Confidence 6789999997766666667765 2 34 455664443331 1222211 2 25666777654 44678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.|+.+++-.. .... ...+++.+..+|++||.+.++..
T Consensus 115 fD~v~~~~~~~~--------------~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 115 FEAVLALGDVLS--------------YVEN-KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp EEEEEECSSHHH--------------HCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcchhhh--------------cccc-HHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653211 0011 56778889999999999988753
No 205
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=95.05 E-value=0.023 Score=48.40 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH----HHHhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ----SLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~----~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+.++||.||-|+=..++.++++ + ..+++.-+|. ++.+ -+.+++. .+....+.++ .-||.+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~--~~i~---~ar~~~~~~~~~~~~~rv~~~-~~D~~~~~---- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADE--KILD---SFISFFPHFHEVKNNKNFTHA-KQLLDLDI---- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCH--HHHG---GGTTTSTTHHHHHTCTTEEEE-SSGGGSCC----
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCH--HHHH---HHHHHHHhhccccCCCeEEEE-echHHHHH----
Confidence 35689999999998888888877 4 4565555543 3321 1222222 2322334554 44776531
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+||.||.+.+. . . .|++.+..+|++||.+.+.
T Consensus 138 ---~~fD~Ii~d~~d---------p----~--------~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 138 ---KKYDLIFCLQEP---------D----I--------HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ---CCEEEEEESSCC---------C----H--------HHHHHHHTTEEEEEEEEEE
T ss_pred ---hhCCEEEECCCC---------h----H--------HHHHHHHHhcCCCcEEEEE
Confidence 679999998421 0 1 1999999999999998775
No 206
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=95.04 E-value=0.086 Score=42.98 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=64.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||-|.=.++..|++..+ ..+++ .|..+++.+ .+.++++.+.-.++ .+...|+. . . ...
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~--vD~~~~~~~---~a~~~~~~~~~~~v-~~~~~d~~-~-~--~~~ 155 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYT--IERIPELVE---FAKRNLERAGVKNV-HVILGDGS-K-G--FPP 155 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEE--EESCHHHHH---HHHHHHHHTTCCSE-EEEESCGG-G-C--CGG
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEE--EeCCHHHHH---HHHHHHHHcCCCCc-EEEECCcc-c-C--CCC
Confidence 456788999999887677778888875 35554 553333331 35666655432233 33444552 1 1 112
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.||.+.+-.... ..+..+|++||.+.++.-..
T Consensus 156 ~~~fD~Ii~~~~~~~~~----------------------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIP----------------------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GCCEEEEEECSBBSSCC----------------------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHH----------------------HHHHHhcCCCcEEEEEEecC
Confidence 34599999987653321 13567899999999987653
No 207
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.02 E-value=0.018 Score=52.35 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=67.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCC-CCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDR-HPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~-~~~~~~ 95 (214)
.+.+||=++=|.=.||.-+|+..+.+ --+++.|..++.. ..+.+|++.+.-.+. ..++.-||.++-. . + .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av---~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~-~ 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAI---EIMKENFKLNNIPEDRYEIHGMEANFFLRKE--W-G 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHH---HHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--C-S
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHH---HHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--h-C
Confidence 46789887644444444466654322 3455666555444 257788887653332 4456668876532 1 1 4
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..||+|+-|.| |. ...|+.+|.++|+++|.+++|..+
T Consensus 124 ~~fD~V~lDP~--g~------------------~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 124 FGFDYVDLDPF--GT------------------PVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp SCEEEEEECCS--SC------------------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCcEEEECCC--cC------------------HHHHHHHHHHHhCCCCEEEEEecc
Confidence 57999999974 32 124777899999999988998644
No 208
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=94.91 E-value=0.022 Score=46.87 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~~~~~~ 95 (214)
....+||.||-|.=.++..|++.++....+ |+.|..++..+ .+.++++...-.....+..-|+.+. ... ....
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~iD~~~~~~~---~a~~~~~~~g~~~~i~~~~~d~~~~l~~l-~~~~ 144 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQI--IACDQDPNATA---IAKKYWQKAGVAEKISLRLGPALATLEQL-TQGK 144 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHHHHH-HTSS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHH-HhcC
Confidence 457899999977666677788877533344 55564444331 3566665442212223334455431 110 0112
Q ss_pred --CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 --MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 --~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..||.|+.+.+. . -...+++.+..+|++||.|.+.
T Consensus 145 ~~~~fD~V~~d~~~----~---------------~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 145 PLPEFDLIFIDADK----R---------------NYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp SCCCEEEEEECSCG----G---------------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCcCEEEECCCH----H---------------HHHHHHHHHHHHcCCCeEEEEe
Confidence 679999988651 0 1234788889999999999874
No 209
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.87 E-value=0.023 Score=51.13 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH---------------HhCCCEEEEcc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL---------------WSRGCLVLHGV 82 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L---------------~~~g~~Vl~~V 82 (214)
.+.+||=+|=|.=.++..+|+..+ +..| ++.|..++.. ..+.+|++.+ .-.+ ..+..-
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V--~avDi~~~av---~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~ 119 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEV--WLNDISEDAY---ELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHD 119 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEE--EEEESCHHHH---HHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEES
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeE--EEEECCHHHH---HHHHHHHHHhcccccccccccccccCCCc-eEEEcC
Confidence 567899888666666666887764 3344 4556444443 2578898877 2222 334455
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.++-.. ....||.|+.|.|... ..|+.+|..+|+++|.++||..
T Consensus 120 Da~~~~~~---~~~~fD~I~lDP~~~~--------------------~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 120 DANRLMAE---RHRYFHFIDLDPFGSP--------------------MEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp CHHHHHHH---STTCEEEEEECCSSCC--------------------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred cHHHHHHh---ccCCCCEEEeCCCCCH--------------------HHHHHHHHHhcCCCCEEEEEee
Confidence 77665321 1357999998766321 3678889999999999999853
No 210
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=94.86 E-value=0.14 Score=45.90 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCCCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-----CCCEEEEccccccCC
Q 041136 16 YTNNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-----RGCLVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-----~g~~Vl~~VDAt~L~ 88 (214)
-.++++|| +-|=|.=|.. ||... ....|+|.-.+. .-+. ...+|++.+.. .....+...|++++.
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~--la~~~-~~~~l~A~D~~~-~R~~----~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLA--LLQTG-CCRNLAANDLSP-SRIA----RLQKILHSYVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHH--HHHTT-CEEEEEEECSCH-HHHH----HHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred CCCCCEEEEecCCccHHHHH--HHHhc-CCCcEEEEcCCH-HHHH----HHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence 45566775 3456776654 56543 223465543332 2222 34566666522 123556677888765
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCC------C-CCc-ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc
Q 041136 89 RHPTLSQMKFDVIIFNFPHAGHSP------P-LSE-QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN 160 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~G~~~------~-~~~-~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~ 160 (214)
. +....||+|+-+=|+.|.+. + ... .....+.....|=...+.+|..+|++||.+.-+-|.=.|-..-.
T Consensus 218 ~---~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~ 294 (359)
T 4fzv_A 218 E---LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY 294 (359)
T ss_dssp H---HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHH
T ss_pred h---hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHH
Confidence 3 34578999999999998310 0 111 11122222233445678899999999999988888877754444
Q ss_pred Hh
Q 041136 161 VM 162 (214)
Q Consensus 161 i~ 162 (214)
++
T Consensus 295 vV 296 (359)
T 4fzv_A 295 VV 296 (359)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 211
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=94.84 E-value=0.2 Score=41.48 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCeEEEEecCchhHHHHHHHH---hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA---FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~---~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+||-||-|.=..+..||+. .+++..|++.-++. ++.+ .+. .+ ..++.++.+ |+.++...+.+.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~--~~l~---~a~----~~-~~~v~~~~g-D~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL--SRCQ---IPA----SD-MENITLHQG-DCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC--TTCC---CCG----GG-CTTEEEEEC-CSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh--HHHH---HHh----cc-CCceEEEEC-cchhHHHHHhhc
Confidence 4579999997766666678876 34445666554443 2221 111 12 134666555 887742111233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHh-ccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGRE-MLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~-lL~~~G~i~VT 149 (214)
..+||.|+.+..|. . +..+|..+.. +|++||.+.+.
T Consensus 150 ~~~fD~I~~d~~~~-~------------------~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 150 EMAHPLIFIDNAHA-N------------------TFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp SSCSSEEEEESSCS-S------------------HHHHHHHHHHHTCCTTCEEEEC
T ss_pred cCCCCEEEECCchH-h------------------HHHHHHHHHHhhCCCCCEEEEE
Confidence 44799999988762 0 1236677775 99999999885
No 212
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=94.76 E-value=0.018 Score=48.27 Aligned_cols=115 Identities=23% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+||-||=|.=.++..|++. + .+ .|+.|..++..+ .+.+++...... ....+...|+..+... .+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~gvD~s~~~l~---~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 126 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE-G--FS--VTSVDASDKMLK---YALKERWNRRKEPAFDKWVIEEANWLTLDKD-VP 126 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-SC
T ss_pred cCCCEEEEecCCCCHHHHHHHHC-C--Ce--EEEEECCHHHHH---HHHHhhhhcccccccceeeEeecChhhCccc-cc
Confidence 46789999996666667778776 2 24 455664333331 244444221111 1233445566665311 03
Q ss_pred CCCcccEEEEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.|+.+ +-|+.... ...+.+..+++.+..+|+|||.+.++..
T Consensus 127 ~~~~fD~V~~~g~~l~~~~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 127 AGDGFDAVICLGNSFAHLPDSK-----------GDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCEEEEEECTTCGGGSCCSS-----------SSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCeEEEEEcChHHhhcCccc-----------cCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 45789999986 23433210 0123466788889999999999988854
No 213
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=94.66 E-value=0.35 Score=42.40 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=80.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||=||=|.=.++.+|++++. ++.+|.+|..+.+. .+.++++.-...++.+. .-|.-+ . .+
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p---~~~~~~~dlp~v~~----~a~~~~~~~~~~rv~~~-~gD~~~---~-~~- 242 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYP---GCKITVFDIPEVVW----TAKQHFSFQEEEQIDFQ-EGDFFK---D-PL- 242 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCS---SCEEEEEECHHHHH----HHHHHSCC--CCSEEEE-ESCTTT---S-CC-
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCC---CceeEeccCHHHHH----HHHHhhhhcccCceeee-cCcccc---C-CC-
Confidence 577788999999777777888999985 56788899755443 34444432112233333 334432 1 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---C-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---D------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~------------------- 152 (214)
..+|.|++..=-.... | +-....++.+...|+|+|.+.|.=. +
T Consensus 243 -~~~D~~~~~~vlh~~~----d----------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~ 307 (353)
T 4a6d_A 243 -PEADLYILARVLHDWA----D----------GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQT 307 (353)
T ss_dssp -CCCSEEEEESSGGGSC----H----------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSS
T ss_pred -CCceEEEeeeecccCC----H----------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhC
Confidence 2368888754322221 1 1123345678888999999877521 1
Q ss_pred -CCCCCcccHhhHHHhcCCEEEEEec
Q 041136 153 -DHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 153 -~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
|..++.=++..+.+++||...+..+
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 1122333466789999999888654
No 214
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=94.66 E-value=0.11 Score=44.44 Aligned_cols=110 Identities=8% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC-CCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR-HPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~-~~~~ 93 (214)
+..++.+||-||=|.=.++..|++. + ..| |+.|..+++.+ .+.+++... ...+|+.++.. .+..
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~-g--~~V--~gvD~S~~ml~---~Ar~~~~~~-------~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER-G--ASV--TVFDFSQRMCD---DLAEALADR-------CVTIDLLDITAEIPKE 106 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHTSSS-------CCEEEECCTTSCCCGG
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc-C--CEE--EEEECCHHHHH---HHHHHHHhc-------cceeeeeecccccccc
Confidence 5567889999996655566668775 2 344 45664444432 244433221 23445554432 0011
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
...+||.|+.|+.-.-. ..+-+...++....+| |||.+.++...+.
T Consensus 107 ~~~~fD~Vv~~~~l~~~--------------~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRF--------------TTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp GTTCCSEEEEESCGGGS--------------CHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred cCCCccEEEEhhhhHhC--------------CHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 24689999998653211 1122445667777889 9999999977654
No 215
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=94.62 E-value=0.089 Score=40.70 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||.||.|. +..|..+++.+ .+.++. . ..+. +...|+.++... .+.
T Consensus 9 g~~~g~~vL~~~~g~-------------------v~vD~s~~ml~---~a~~~~---~-~~~~-~~~~d~~~~~~~-~~~ 60 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-------------------SPVEALKGLVD---KLQALT---G-NEGR-VSVENIKQLLQS-AHK 60 (176)
T ss_dssp TCCTTSEEEEEECTT-------------------SCHHHHHHHHH---HHHHHT---T-TTSE-EEEEEGGGGGGG-CCC
T ss_pred CCCCCCEEEEecCCc-------------------eeeeCCHHHHH---HHHHhc---c-cCcE-EEEechhcCccc-cCC
Confidence 356789999999985 12554333331 122221 1 1243 445577776421 125
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----CCC---cccHhhHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----PYN---QWNVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----Py~---~W~i~~lA~~ 167 (214)
..+||.|+.++--.-... + +..+++.+..+|+|||.+.+...... +.. .=.+..+.+.
T Consensus 61 ~~~fD~V~~~~~l~~~~~---~------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTL---H------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTL 125 (176)
T ss_dssp SSCEEEEEECCSTTCCCC---C------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHH
T ss_pred CCCEeEEEECChhhhccc---C------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHH
Confidence 678999998764322100 0 14577888999999999988532111 111 1135677888
Q ss_pred cCC
Q 041136 168 LGL 170 (214)
Q Consensus 168 ~gl 170 (214)
+||
T Consensus 126 aGf 128 (176)
T 2ld4_A 126 SGL 128 (176)
T ss_dssp TTC
T ss_pred CCC
Confidence 999
No 216
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=94.57 E-value=0.028 Score=45.85 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC-
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS- 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~- 94 (214)
...+.+||-||=|.=.++..|++... ++++ .|..++..+ .+.++. ...+ .-+...|+.++.....+.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~g--vD~s~~~~~---~a~~~~---~~~~-~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIG--LDVSKSALE---IAAKEN---TAAN-ISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS---CEEE--EESCHHHHH---HHHHHS---CCTT-EEEEECCTTCHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEE--EECCHHHHH---HHHHhC---cccC-ceEEECccccccccccccc
Confidence 46778999999777677777888753 4554 554333331 233322 1113 334455776653211111
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...||.|+.+....-.. .+-...+++.+..+|++||.+.|.-
T Consensus 122 ~~~~d~v~~~~~~~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 122 EIGDANIYMRTGFHHIP--------------VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp HHCSCEEEEESSSTTSC--------------GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccCccEEEEcchhhcCC--------------HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 13489999986554321 1123567888889999999976653
No 217
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=94.49 E-value=0.022 Score=51.47 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--------CCCEEEEccccccCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--------RGCLVLHGVNVHTMDR 89 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--------~g~~Vl~~VDAt~L~~ 89 (214)
+.++||.+|=|+=.+++.++++. +..|++ .|..+++.+ -+.+|+..+.. ..+.|+++ ||.+.-+
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~--~~~Vt~--VEID~~vie---~Ar~~~~~l~~~~l~dp~~~rv~vi~~-Da~~~L~ 259 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLK--PKMVTM--VEIDQMVID---GCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLK 259 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTC--CSEEEE--EESCHHHHH---HHHHHCCC----CCSSSEETTEEEEES-CHHHHHH
T ss_pred CCCEEEEEECChhHHHHHHHHCC--CCEEEE--EECCHHHHH---HHHHHHHHhccccccccCCCcEEEEEC-cHHHHHH
Confidence 57899999988888888887753 245554 454444432 35555543321 13555554 7766321
Q ss_pred CCCC--CCCcccEEEEcCCC--CCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 90 HPTL--SQMKFDVIIFNFPH--AGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 90 ~~~~--~~~~FD~IiFNFPH--~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
. + ..++||.||-+.|. .|... ..+ .-.+.+...++.|..+|+++|.+.+-.+.
T Consensus 260 ~--~~~~~~~fDvII~D~~d~P~~~~p-------~~L-~t~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 260 R--YAKEGREFDYVINDLTAVPISTSP-------EED-STWEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp H--HHHHTCCEEEEEEECCSSCCCCC------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred h--hhccCCCceEEEECCCCcccCcCc-------hhh-hHHHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 0 1 24679999999986 23211 001 12444555555559999999988766443
No 218
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=94.46 E-value=0.031 Score=46.25 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~ 95 (214)
..+.+||-||=|.=..+..|++..+ .++ |+.|-.+++.+ .+.++. +..+.. .++..||..+.. .+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v--~~id~~~~~~~---~a~~~~---~~~~~~~~~~~~~a~~~~~--~~~~ 126 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEH--WIIECNDGVFQ---RLRDWA---PRQTHKVIPLKGLWEDVAP--TLPD 126 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEE--EEEECCHHHHH---HHHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEE--EEEeCCHHHHH---HHHHHH---hhCCCceEEEeehHHhhcc--cccc
Confidence 5778999999776666666776542 344 45665455442 233332 233432 234456665432 2556
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
..||.|+|+-..... ...+..-...|++.+..+|+|||.+..
T Consensus 127 ~~FD~i~~D~~~~~~-----------~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 127 GHFDGILYDTYPLSE-----------ETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp TCEEEEEECCCCCBG-----------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cCCceEEEeeeeccc-----------chhhhcchhhhhhhhhheeCCCCEEEE
Confidence 789999997432221 012445577889999999999998754
No 219
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=94.34 E-value=0.049 Score=48.40 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=79.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEE----ccccccCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLH----GVNVHTMDRHP 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~----~VDAt~L~~~~ 91 (214)
.....+||-||=|+=.++..|++. + . -.|+.|..++.. +..++.|..+.. ..|+..+.
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~-g--~--~v~gvD~s~~~~----------~~a~~~~~~~~~~~~~~~~~~~l~--- 166 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA-G--V--RHLGFEPSSGVA----------AKAREKGIRVRTDFFEKATADDVR--- 166 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT-T--C--EEEEECCCHHHH----------HHHHTTTCCEECSCCSHHHHHHHH---
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-C--C--cEEEECCCHHHH----------HHHHHcCCCcceeeechhhHhhcc---
Confidence 357789999996555566667764 2 2 456777544332 222333444332 22333321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-------CC----------
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-------DH---------- 154 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-------~~---------- 154 (214)
+..++||.|+.+.--.-. .-...|++.+..+|++||.+.++.-. ..
T Consensus 167 -~~~~~fD~I~~~~vl~h~----------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 229 (416)
T 4e2x_A 167 -RTEGPANVIYAANTLCHI----------------PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFF 229 (416)
T ss_dssp -HHHCCEEEEEEESCGGGC----------------TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCE
T ss_pred -cCCCCEEEEEECChHHhc----------------CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhh
Confidence 235789999998542211 11467888999999999999887421 00
Q ss_pred CCCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.++.-.+..+++++||.+.+...+.
T Consensus 230 ~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 230 LFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp ECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 0222357889999999998876653
No 220
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=94.25 E-value=0.074 Score=43.98 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.++ +..++ +.|..++..+ .+.++. .++. +...|+.++. +...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~--~vD~s~~~~~---~a~~~~-----~~~~-~~~~d~~~~~----~~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTF--GLDVSKVAIK---AAAKRY-----PQVT-FCVASSHRLP----FSDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEE--EEESCHHHHH---HHHHHC-----TTSE-EEECCTTSCS----BCTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEE--EEeCCHHHHH---HHHHhC-----CCcE-EEEcchhhCC----CCCC
Confidence 5678999999777666777888763 33554 4554333321 122221 2233 3445776653 4456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+||.|+.+++. .+++.+..+|++||.+.+...
T Consensus 148 ~fD~v~~~~~~-----------------------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 148 SMDAIIRIYAP-----------------------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp CEEEEEEESCC-----------------------CCHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEeCCh-----------------------hhHHHHHHhcCCCcEEEEEEc
Confidence 89999987651 124667889999999977643
No 221
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=94.12 E-value=0.063 Score=43.54 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=70.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccc-cCCCCCCCC-
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVH-TMDRHPTLS- 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt-~L~~~~~~~- 94 (214)
.+..+||-||=|.=.++..|++. + ..++ +.|..+...+ .+.++ ..++.+ ...|+. .+ .+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~--~vD~s~~~~~---~a~~~-----~~~~~~-~~~d~~~~~----~~~~ 108 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-A--ARWA--AYDFSPELLK---LARAN-----APHADV-YEWNGKGEL----PAGL 108 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-S--SEEE--EEESCHHHHH---HHHHH-----CTTSEE-EECCSCSSC----CTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--CEEE--EEECCHHHHH---HHHHh-----CCCceE-EEcchhhcc----CCcC
Confidence 57789999997766677778876 2 3454 4564333331 23333 123443 445663 22 234
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..+||.|+.+.. ...+++.+..+|+|||.+... +...+.-.+..+..++|+....
T Consensus 109 ~~~fD~v~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 109 GAPFGLIVSRRG----------------------PTSVILRLPELAAPDAHFLYV---GPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp CCCEEEEEEESC----------------------CSGGGGGHHHHEEEEEEEEEE---ESSSCCTHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCC----------------------HHHHHHHHHHHcCCCcEEEEe---CCcCCHHHHHHHHHHCCCeEEE
Confidence 578999999821 112345577899999998722 1223444677888899988765
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 164 ~ 164 (226)
T 3m33_A 164 E 164 (226)
T ss_dssp E
T ss_pred E
Confidence 3
No 222
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=93.99 E-value=0.58 Score=39.08 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=55.3
Q ss_pred EEEcccccc-CCCC-CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec-CC-
Q 041136 78 VLHGVNVHT-MDRH-PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR-DD- 153 (214)
Q Consensus 78 Vl~~VDAt~-L~~~-~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~-~~- 153 (214)
-+...|+++ +.-. ..+...+||.|+.++-.... ..+..-+..+++.+..+|+|||.+.++-. ..
T Consensus 153 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~ 220 (289)
T 2g72_A 153 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV------------SPDLASFQRALDHITTLLRPGGHLLLIGALEES 220 (289)
T ss_dssp EEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH------------CSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred eEEecccCCCCCccccccCCCCCCEEEehhhhhhh------------cCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc
Confidence 345568876 3211 12445679999999642110 00122356788999999999999877521 10
Q ss_pred -----------CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 -----------HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 -----------~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+++.-.+..+.+++||.+.....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 221 WYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 12344457778889999988765543
No 223
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=93.87 E-value=0.022 Score=51.81 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcC-ccH-HHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKH-WTS-QAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY-~~a-~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
+.++||++|=|+-+-++.+.++ . ...|++--+|.+- ++.++| |.. ....+..+.-.++|+++ ||.+ |.+. .-
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~-Da~~fl~~~-~~ 280 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLKRY-AK 280 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES-CHHHHHHHH-HH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH-HHHHHHHhh-hh
Confidence 4589999999999999988875 3 3567666666432 333444 221 11111112223444443 5543 1110 00
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
..++||.||-+-|.......- .. -.....-..||+.++..|+++|.+.
T Consensus 281 ~~~~yDvIIvDl~D~~~s~~p-~g-----~a~~Lft~eFy~~~~~~L~p~GVlv 328 (381)
T 3c6k_A 281 EGREFDYVINDLTAVPISTSP-EE-----DSTWEFLRLILDLSMKVLKQDGKYF 328 (381)
T ss_dssp HTCCEEEEEEECCSSCCCCC----------CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccCceeEEEECCCCCcccCcc-cC-----cchHHHHHHHHHHHHHhcCCCCEEE
Confidence 246799999997754321100 00 0134456899999999999999753
No 224
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=93.85 E-value=0.75 Score=40.38 Aligned_cols=128 Identities=17% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|- +++.+.-. + ..++. +..-|+.+ . +..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~---~------~~~v~-~~~~d~~~--~---~p~ 261 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYP---SINAINFDL-PHVIQDAP---A------FSGVE-HLGGDMFD--G---VPK 261 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTTCC---C------CTTEE-EEECCTTT--C---CCC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeh-HHHHHhhh---h------cCCCE-EEecCCCC--C---CCC
Confidence 67889999999877778888999884 456788887 44442211 1 02333 33445543 1 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-c-CCC-------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-R-DDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~-~~~------------------- 154 (214)
. |.|+..+-..... .+-...+++.+..+|+|||.+.|.= . ...
T Consensus 262 ~--D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (368)
T 3reo_A 262 G--DAIFIKWICHDWS--------------DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA 325 (368)
T ss_dssp C--SEEEEESCGGGBC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred C--CEEEEechhhcCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh
Confidence 2 9999877644321 1233467788899999999987742 1 111
Q ss_pred ------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++.=++..+.+++||...+..+-
T Consensus 326 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 326 YNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp HSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred hcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 112223567788889888776543
No 225
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=93.84 E-value=0.1 Score=43.53 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=54.8
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC--
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-- 154 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-- 154 (214)
++-.|+++..........+||.|+.++= |+.. +..-+...++....+|+|||.+.++-....
T Consensus 138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~--------------~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~ 203 (263)
T 2a14_A 138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC--------------SLDAYRAALCNLASLLKPGGHLVTTVTLRLPS 203 (263)
T ss_dssp EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--------------SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE
T ss_pred EEeccccCCCCCCccccCCCCEeeehHHHHHhcC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc
Confidence 5566777743211123458999999873 2111 122345678888999999999977732111
Q ss_pred -----------CCCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 -----------PYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 -----------Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+++.-.+.++...+||.+.+...+.
T Consensus 204 ~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 204 YMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 1233357788889999988765543
No 226
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=93.77 E-value=0.38 Score=41.78 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCC--CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSA--TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~--~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||=+|=|.=.|+.++++..... .....++.|..++.. .-|..|+.... ..+.+..+ |+... ...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~---~~a~~n~~~~g-~~~~i~~~-D~l~~-----~~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI---SLALVGADLQR-QKMTLLHQ-DGLAN-----LLV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH---HHHHHHHHHHT-CCCEEEES-CTTSC-----CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH---HHHHHHHHhCC-CCceEEEC-CCCCc-----ccc
Confidence 45688877644444445576665311 124555666544443 24666665432 23444433 44331 224
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHH----HHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--CCcccHhhHHHhcC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNL----IKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--YNQWNVMGLADKLG 169 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~----i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--y~~W~i~~lA~~~g 169 (214)
.+||.||.|.|. |... ..++.... ..-...+-..|++.+..+|+++|.+.+.+.++-- -..-.+.....+.+
T Consensus 200 ~~fD~Ii~NPPf-g~~~-~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~ 277 (344)
T 2f8l_A 200 DPVDVVISDLPV-GYYP-DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG 277 (344)
T ss_dssp CCEEEEEEECCC-SEES-CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred CCccEEEECCCC-CCcC-chhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCC
Confidence 679999999993 2110 00000000 0000012346888899999999998777643310 11223444444555
Q ss_pred CEEEEEecCCCCCCCCC
Q 041136 170 LVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 170 l~l~~~~~F~~~~yPgY 186 (214)
+. ...+.+....|++.
T Consensus 278 ~~-~~ii~lp~~~F~~~ 293 (344)
T 2f8l_A 278 HI-EGIIKLPETLFKSE 293 (344)
T ss_dssp EE-EEEEECCGGGSCC-
T ss_pred eE-EEeeeCChhhccCC
Confidence 42 33344555555544
No 227
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=93.68 E-value=0.1 Score=48.30 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-||-|.=.++..|++. + ...|+|+-. .+.+. .+.++++.+.-.+..-+..-|+.++. + ..
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~--s~~l~----~A~~~~~~~gl~~~v~~~~~d~~~~~----~-~~ 223 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEA--STMAQ----HAEVLVKSNNLTDRIVVIPGKVEEVS----L-PE 223 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEEC--HHHHH----HHHHHHHHTTCTTTEEEEESCTTTCC----C-SS
T ss_pred cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEc--HHHHH----HHHHHHHHcCCCCcEEEEECchhhCc----c-CC
Confidence 46789999996665566667763 2 346666544 33332 36667765532223344455776652 2 24
Q ss_pred cccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.||.|.| +... +..++ ..+..+..+|++||.+.++.
T Consensus 224 ~fD~Ivs~~~~~~~~--------------~e~~~-~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 224 QVDIIISEPMGYMLF--------------NERML-ESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CEEEEECCCCHHHHT--------------CHHHH-HHHHHGGGGEEEEEEEESCE
T ss_pred CeEEEEEeCchHhcC--------------cHHHH-HHHHHHHHhcCCCCEEEEEe
Confidence 7999999988 3221 11222 34456889999999986543
No 228
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=93.66 E-value=0.81 Score=38.28 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=78.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ- 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~- 95 (214)
++.+||=||-|.=..+.+||+.. +...++| .|-.+... ..|.+|++.+.-.+ +.+.. -|+-. .+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~-~~~~V~a--vDi~~~al---~~A~~N~~~~gl~~~i~~~~-~d~l~-----~l~~~ 82 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERG-QIKSAIA--GEVVEGPY---QSAVKNVEAHGLKEKIQVRL-ANGLA-----AFEET 82 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTT-SEEEEEE--EESSHHHH---HHHHHHHHHTTCTTTEEEEE-CSGGG-----GCCGG
T ss_pred CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEE--EECCHHHH---HHHHHHHHHcCCCceEEEEE-Cchhh-----hcccC
Confidence 56799999988888888888863 2234544 55434333 25788887765433 33333 34421 1222
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.|+.. |. --+++..++..+...|+++|.+.+.-.. ..-.+.....++||.+.+
T Consensus 83 ~~~D~Ivia----G~--------------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~----~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 83 DQVSVITIA----GM--------------GGRLIARILEEGLGKLANVERLILQPNN----REDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp GCCCEEEEE----EE--------------CHHHHHHHHHHTGGGCTTCCEEEEEESS----CHHHHHHHHHHTTEEEEE
T ss_pred cCCCEEEEc----CC--------------ChHHHHHHHHHHHHHhCCCCEEEEECCC----CHHHHHHHHHHCCCEEEE
Confidence 269998862 22 1357889999999999999887776443 334566677788887765
No 229
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=93.56 E-value=0.76 Score=38.65 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.++.+||=||-|.=-.+.+|++.. +...++|+=.+ +... ..|.+|++.+.-.+ +.+..+ |+-+.- ...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~--~~al---~~A~~N~~~~gl~~~I~~~~g-D~l~~~----~~~ 88 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVV--NGPY---QSALKNVSEHGLTSKIDVRLA-NGLSAF----EEA 88 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESS--HHHH---HHHHHHHHHTTCTTTEEEEEC-SGGGGC----CGG
T ss_pred CCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECC--HHHH---HHHHHHHHHcCCCCcEEEEEC-chhhcc----ccc
Confidence 356799999988777777788763 33345554444 3333 25888887765433 444444 444321 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.|+. .|- --+++..++..+...|+++|.+.+.-. ...-.+.....++||.+.+
T Consensus 89 ~~~D~Ivi----aGm--------------Gg~lI~~IL~~~~~~l~~~~~lIlqp~----~~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 89 DNIDTITI----CGM--------------GGRLIADILNNDIDKLQHVKTLVLQPN----NREDDLRKWLAANDFEIVA 145 (230)
T ss_dssp GCCCEEEE----EEE--------------CHHHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHTTEEEEE
T ss_pred cccCEEEE----eCC--------------chHHHHHHHHHHHHHhCcCCEEEEECC----CChHHHHHHHHHCCCEEEE
Confidence 36999885 232 135888999999999999998777632 2344566777888988765
No 230
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=93.36 E-value=2.1 Score=37.48 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|- .++.+. +.. ....-+..-|+.+ . +..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~-------~~~v~~~~~D~~~--~---~p~ 259 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYP---TIKGVNFDL-PHVISE---APQ-------FPGVTHVGGDMFK--E---VPS 259 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC-------CTTEEEEECCTTT--C---CCC
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCC---CCeEEEecC-HHHHHh---hhh-------cCCeEEEeCCcCC--C---CCC
Confidence 77889999999777778888999884 456788888 444322 111 1223333445554 1 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-e-cCCC-------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-L-RDDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l-~~~~------------------- 154 (214)
. |.|+..+--.... .+-...+++.+...|+|||.+.|. . ....
T Consensus 260 ~--D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~ 323 (364)
T 3p9c_A 260 G--DTILMKWILHDWS--------------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA 323 (364)
T ss_dssp C--SEEEEESCGGGSC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH
T ss_pred C--CEEEehHHhccCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh
Confidence 2 9998765433221 123456678889999999998764 1 1111
Q ss_pred ------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++.=++..+.+++||...+..+.
T Consensus 324 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 324 HNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp HCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 111222567788889888776543
No 231
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=93.34 E-value=0.76 Score=39.01 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.++.+||=||-|.=-.+.+||+.. +...++| .|-.+... ..|.+|++.+.-.+ +.+.. -|+-.. +..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~a--vDi~~~al---~~A~~N~~~~gl~~~I~v~~-gD~l~~-----~~~ 87 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQ-TASFAIA--GEVVDGPF---QSAQKQVRSSGLTEQIDVRK-GNGLAV-----IEK 87 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTT-SEEEEEE--EESSHHHH---HHHHHHHHHTTCTTTEEEEE-CSGGGG-----CCG
T ss_pred CCCCEEEEECCccHHHHHHHHHhC-CCCEEEE--EECCHHHH---HHHHHHHHHcCCCceEEEEe-cchhhc-----cCc
Confidence 356799999987777777788763 2234554 45433333 25788887765333 33333 344332 222
Q ss_pred -CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 -MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 -~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
.+||.||. .|. --+++..++..+...|+++|.+.+.-.. ..-.+.....++||.+.+
T Consensus 88 ~~~~D~Ivi----agm--------------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~----~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 88 KDAIDTIVI----AGM--------------GGTLIRTILEEGAAKLAGVTKLILQPNI----AAWQLREWSEQNNWLITS 145 (244)
T ss_dssp GGCCCEEEE----EEE--------------CHHHHHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHHTEEEEE
T ss_pred cccccEEEE----eCC--------------chHHHHHHHHHHHHHhCCCCEEEEEcCC----ChHHHHHHHHHCCCEEEE
Confidence 35999886 332 1358899999999999998888777433 334566677778887644
No 232
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=93.31 E-value=0.25 Score=39.60 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||=|.=.++..|++.. ..+++ .|..++..+ .+.+++..+. ++. +...|+.+.. ..
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~--vD~~~~~~~---~a~~~~~~~~--~v~-~~~~d~~~~~----~~ 131 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVS--VEINEKMYN---YASKLLSYYN--NIK-LILGDGTLGY----EE 131 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEE--EESCHHHHH---HHHHHHTTCS--SEE-EEESCGGGCC----GG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEE--EeCCHHHHH---HHHHHHhhcC--CeE-EEECCccccc----cc
Confidence 45678899999977766777788764 35555 454343331 2444443221 333 3445666511 13
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.|+.+.+-.... ..+..+|++||.+.++....
T Consensus 132 ~~~fD~v~~~~~~~~~~----------------------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLL----------------------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GCCEEEEEESSBBSSCC----------------------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHH----------------------HHHHHHcCCCcEEEEEEcCC
Confidence 46799999997653321 13667899999998886543
No 233
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=93.27 E-value=0.61 Score=40.48 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=78.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|. ..+.+. +.+ + .++.+. ..|+.+ . +.
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~----~--~~v~~~-~~d~~~-~----~~- 250 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP---HLKCTVFDQ-PQVVGN---LTG----N--ENLNFV-GGDMFK-S----IP- 250 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT---TSEEEEEEC-HHHHSS---CCC----C--SSEEEE-ECCTTT-C----CC-
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC---CCeEEEecc-HHHHhh---ccc----C--CCcEEE-eCccCC-C----CC-
Confidence 45678999999777777888999874 456788887 444421 111 1 233333 335554 1 22
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCC---CCEEEEEe-c-CCC----------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGE---GGEVHVTL-R-DDH---------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~---~G~i~VTl-~-~~~---------------- 154 (214)
.||.|+.+..-.-.. ..-...+++.+..+|++ ||.+.|.- . ...
T Consensus 251 -~~D~v~~~~vlh~~~--------------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 315 (358)
T 1zg3_A 251 -SADAVLLKWVLHDWN--------------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 315 (358)
T ss_dssp -CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHH
T ss_pred -CceEEEEcccccCCC--------------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHH
Confidence 399999987744321 11234667788899999 99987742 1 111
Q ss_pred --------CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 --------PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --------Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.++.=++.++.+++||...+..+
T Consensus 316 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 316 MLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 11222355677788998877654
No 234
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=93.24 E-value=0.16 Score=42.74 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=73.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH---------HHH-------hCCCEEEE
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ---------SLW-------SRGCLVLH 80 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~---------~L~-------~~g~~Vl~ 80 (214)
....+||-||=|+=-.+..||+. | . -+|+.|-.++..+ .|.+... ... ...-.-+.
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~-G--~--~V~gvD~S~~~i~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR-G--H--TVVGVEISEIGIR---EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLY 138 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC-C--C--eEEEEECCHHHHH---HHHHhcccccccccccccccccccccCCCceEEE
Confidence 36789999995555555668875 3 2 4677885444432 1221111 000 01122344
Q ss_pred ccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEec------CC
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLR------DD 153 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~------~~ 153 (214)
.-|+.++.. -...+||.|+.+.-..... ......+++.+..+|+|||.+ .+|+. .+
T Consensus 139 ~~D~~~l~~---~~~~~FD~V~~~~~l~~l~--------------~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g 201 (252)
T 2gb4_A 139 CCSIFDLPR---ANIGKFDRIWDRGALVAIN--------------PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAG 201 (252)
T ss_dssp ESCTTTGGG---GCCCCEEEEEESSSTTTSC--------------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCC
T ss_pred ECccccCCc---ccCCCEEEEEEhhhhhhCC--------------HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCC
Confidence 557777642 1126899999765433221 123456788899999999998 46765 23
Q ss_pred CCCCccc---HhhHHHhcCCEEEEEe
Q 041136 154 HPYNQWN---VMGLADKLGLVLKEKV 176 (214)
Q Consensus 154 ~Py~~W~---i~~lA~~~gl~l~~~~ 176 (214)
.|+. +. +..+... ++.+....
T Consensus 202 ~~~~-~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 202 PPFY-VPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp SSCC-CCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCC-CCHHHHHHHhhC-CeEEEEEe
Confidence 3432 33 3333333 47776644
No 235
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=92.93 E-value=0.32 Score=44.70 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccH-------HHHHHHHH--hCCCEEEEccccc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTS-------QAHLQSLW--SRGCLVLHGVNVH 85 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a-------~~ni~~L~--~~g~~Vl~~VDAt 85 (214)
....+++||-||=|.=++++.||+..+. . .+++.|-.+++.+ .| ..|++.+. -.++.++.+-|..
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~-~--~V~GVDis~~~l~---~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGC-A--LSFGCEIMDDASD---LTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCC-S--EEEEEECCHHHHH---HHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCC-C--EEEEEeCCHHHHH---HHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 3467899999997766667778887752 2 4556664444331 23 44544432 1234444432221
Q ss_pred cCCCCCCC--CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 86 TMDRHPTL--SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 86 ~L~~~~~~--~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.. . .+ ....||+|+.|....+. + +...++.+..+|++||.|.++
T Consensus 313 ~~--~-~~~~~~~~FDvIvvn~~l~~~---------d--------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 313 DN--N-RVAELIPQCDVILVNNFLFDE---------D--------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TC--H-HHHHHGGGCSEEEECCTTCCH---------H--------HHHHHHHHHTTCCTTCEEEES
T ss_pred cc--c-ccccccCCCCEEEEeCccccc---------c--------HHHHHHHHHHhCCCCeEEEEe
Confidence 10 0 01 13579999998544221 1 113345667889999999876
No 236
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=92.88 E-value=0.33 Score=43.74 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=64.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-||-|-=-.|+-.|+ .| +..|+|.-... +. ..|.++++...-.+...+..-|++++.- .++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~-aG-A~~V~ave~s~---~~---~~a~~~~~~n~~~~~i~~i~~~~~~~~l-----pe~ 149 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQ-AG-ARRVYAVEASA---IW---QQAREVVRFNGLEDRVHVLPGPVETVEL-----PEQ 149 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TT-CSEEEEEECST---TH---HHHHHHHHHTTCTTTEEEEESCTTTCCC-----SSC
T ss_pred CCCEEEEeCCCccHHHHHHHH-hC-CCEEEEEeChH---HH---HHHHHHHHHcCCCceEEEEeeeeeeecC-----Ccc
Confidence 467899999665333332343 33 45787765432 22 1366676665544445555567877642 367
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
||.||.+.-..+. .+..+|..++.....+|+|+|.+
T Consensus 150 ~DvivsE~~~~~l-------------~~e~~l~~~l~a~~r~Lkp~G~~ 185 (376)
T 4hc4_A 150 VDAIVSEWMGYGL-------------LHESMLSSVLHARTKWLKEGGLL 185 (376)
T ss_dssp EEEEECCCCBTTB-------------TTTCSHHHHHHHHHHHEEEEEEE
T ss_pred ccEEEeecccccc-------------cccchhhhHHHHHHhhCCCCceE
Confidence 9999987554432 13346788888888999998874
No 237
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=92.84 E-value=0.27 Score=42.11 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCC--CCCcccHHHHHHhH---HHHHHHHHHHHhccCCCCEEEEE
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSP--PLSEQDTNLIKRHK---NLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~--~~~~~~~~~i~~n~---~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+-..++.-|+.++-+ .+..++||.||.|.|-..... ...++..+ +..+. ..+...++.|..+|+++|.+.|.
T Consensus 20 ~~~~i~~gD~~~~l~--~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~-~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLA--SFPEASVHLVVTSPPYWTLKRYEDTPGQLGH-IEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHT--TSCTTCEEEEEECCCCCCCC-------CCHH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHh--hCCCCceeEEEECCCCCCccccCCChhhhcc-cccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444566678887322 245678999999999864321 01111111 12222 23567889999999999999888
Q ss_pred ecCCC----CCCc-------ccHhhHHHhcCCEEEEEecCC
Q 041136 150 LRDDH----PYNQ-------WNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 150 l~~~~----Py~~-------W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+-+.+ .+.. -.+..+..+.|+.+.......
T Consensus 97 ~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW~ 137 (297)
T 2zig_A 97 VGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIWH 137 (297)
T ss_dssp ECCEEEECC----EEEECHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ECCCccccccCCcccccccHHHHHHHHHHcCCeeeccEEEe
Confidence 65432 1111 146667788999887755443
No 238
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=92.65 E-value=0.14 Score=50.99 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCC--CCcEEEeecCChHHHHhcCccH--HHHHHHH-HhCCC--EEEEccccccCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGS--ATNMVASSLDSERTLKTKHWTS--QAHLQSL-WSRGC--LVLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~--~~~l~ATs~ds~~~l~~kY~~a--~~ni~~L-~~~g~--~Vl~~VDAt~L~~ 89 (214)
..+.+||=.|=|.=+|..++++.++. ..+|++.-+|...-- -| ..|+... -..|. ..+.+-|...+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~-----LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~- 393 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLE-----LLSIRLGLLFPQLVSSNNAPTITGEDVCSLN- 393 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHH-----HHHHHHHTTSTTTCBTTBCCEEECCCGGGCC-
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHH-----HHHHHHHHHHhhhhcCCCcceEEecchhccc-
Confidence 45778886654444555557776641 245665555543211 12 2222210 00122 123343443321
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh--------------HHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH--------------KNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n--------------~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.....+||.||.|.|-.+... ......+..... ..+...|++.|..+|+++|.+.+-+
T Consensus 394 --~~~~~kFDVVIgNPPYg~~~~-~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 394 --PEDFANVSVVVMNPPYVSGVT-DPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp --GGGGTTEEEEEECCBCCSSCC-CHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred --ccccCCCCEEEECCCcccccc-chhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 123467999999999976432 111100100000 1256679999999999999985553
No 239
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=92.41 E-value=1.9 Score=37.27 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++..|++|. +.+.+. +.+ + .++. +..-|+.+ . +.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~----~--~~v~-~~~~d~~~--~---~p- 245 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP---KLKCIVFDR-PQVVEN---LSG----S--NNLT-YVGGDMFT--S---IP- 245 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----B--TTEE-EEECCTTT--C---CC-
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC---CCeEEEeeC-HHHHhh---ccc----C--CCcE-EEeccccC--C---CC-
Confidence 56678999999777777888998874 345778888 555432 111 1 2333 33445543 1 21
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCC---CCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGE---GGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~---~G~i~VT 149 (214)
.||.|+.+.--.-.. ..-...+++.+..+|+| ||.+.|.
T Consensus 246 -~~D~v~~~~~lh~~~--------------d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 246 -NADAVLLKYILHNWT--------------DKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp -CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred -CccEEEeehhhccCC--------------HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 299999987643221 11234677888899999 9998766
No 240
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=92.18 E-value=0.39 Score=41.24 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=45.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||-||=|.=.++..|++. +..++| .|..+.+. ..+.+|++.....++. +..-|+.++. +
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~--vDi~~~~~---~~a~~~~~~~~~~~v~-~~~~D~~~~~----~- 104 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPL---AKKVIT--IDIDSRMI---SEVKKRCLYEGYNNLE-VYEGDAIKTV----F- 104 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTT---SSEEEE--ECSCHHHH---HHHHHHHHHTTCCCEE-C----CCSSC----C-
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEE--EECCHHHH---HHHHHHHHHcCCCceE-EEECchhhCC----c-
Confidence 3467889999995555555557764 235555 55434443 2355565533212333 3445777653 2
Q ss_pred CCcccEEEEcCCCCC
Q 041136 95 QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G 109 (214)
..||.||.|.|...
T Consensus 105 -~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 105 -PKFDVCTANIPYKI 118 (299)
T ss_dssp -CCCSEEEEECCGGG
T ss_pred -ccCCEEEEcCCccc
Confidence 36999999999865
No 241
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=91.30 E-value=0.54 Score=39.93 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCCeEEEEecCc-hhHHHHHHHH--h---CCCC---cEEEeecCC----hHHH---HhcCccHHHHHHHHHhC-------
Q 041136 18 NNQRILLVGEGD-FSFSDCLARA--F---GSAT---NMVASSLDS----ERTL---KTKHWTSQAHLQSLWSR------- 74 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~--~---~~~~---~l~ATs~ds----~~~l---~~kY~~a~~ni~~L~~~------- 74 (214)
+..+||.+|=|- ++|...+... . .+.. .+--+|+|. .+++ .+.||....-.+.|-+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 457899999775 8887655422 1 3321 344555543 2333 33455533333333211
Q ss_pred --------C-C-EEEEcccccc-CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCC
Q 041136 75 --------G-C-LVLHGVNVHT-MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGE 142 (214)
Q Consensus 75 --------g-~-~Vl~~VDAt~-L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~ 142 (214)
| + .-++--||.+ |...+......||.|+.+--... .|.+| -..||.....+|++
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~--------------~~p~lw~~~~l~~l~~~L~p 205 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA--------------KNPDMWTQNLFNAMARLARP 205 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT--------------TCGGGCCHHHHHHHHHHEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc--------------cChhhcCHHHHHHHHHHcCC
Confidence 1 1 1234457766 33321111237999999721111 12333 34688889999999
Q ss_pred CCEEEEEecCCCCCCcc-cHhhHHHhcCCEEEEEecCCCCCCCCCccccC
Q 041136 143 GGEVHVTLRDDHPYNQW-NVMGLADKLGLVLKEKVEFLKQDFPGYHNKRG 191 (214)
Q Consensus 143 ~G~i~VTl~~~~Py~~W-~i~~lA~~~gl~l~~~~~F~~~~yPgY~~~rt 191 (214)
||.+. | |+.= .+......+|+.+.+ -||+..||+
T Consensus 206 GG~l~-t------ysaa~~vrr~L~~aGF~v~~--------~~g~~~kr~ 240 (257)
T 2qy6_A 206 GGTLA-T------FTSAGFVRRGLQEAGFTMQK--------RKGFGRKRE 240 (257)
T ss_dssp EEEEE-E------SCCBHHHHHHHHHHTEEEEE--------ECCSTTCCC
T ss_pred CcEEE-E------EeCCHHHHHHHHHCCCEEEe--------CCCCCCCCc
Confidence 99865 4 2221 244555668999877 477776665
No 242
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=90.78 E-value=0.57 Score=39.85 Aligned_cols=81 Identities=23% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+++||-||=|.=.++..|++.. ..++|.-+| +.+.+ .+.++++.........+..-|+.++. +
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~~~D~~~~~----~- 91 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELD--PRLVA---ELHKRVQGTPVASKLQVLVGDVLKTD----L- 91 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESC--HHHHH---HHHHHHTTSTTGGGEEEEESCTTTSC----C-
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECC--HHHHH---HHHHHHHhcCCCCceEEEEcceeccc----c-
Confidence 34678899999966555666688763 356655444 33331 24444432211012334455887763 2
Q ss_pred CCcccEEEEcCCCCC
Q 041136 95 QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G 109 (214)
..||.|+.|.|...
T Consensus 92 -~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 92 -PFFDTCVANLPYQI 105 (285)
T ss_dssp -CCCSEEEEECCGGG
T ss_pred -hhhcEEEEecCccc
Confidence 26999999999865
No 243
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=90.77 E-value=1.3 Score=38.30 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-..+++||.||=|.=.++..|++. +..|+|.-+|.. +. +.+.++++ ...++.+ ..-|+.++. +.
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~--li---~~a~~~~~--~~~~v~v-i~gD~l~~~----~~ 111 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKS--LE---PYANKLKE--LYNNIEI-IWGDALKVD----LN 111 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGG--GH---HHHHHHHH--HCSSEEE-EESCTTTSC----GG
T ss_pred CCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHH--HH---HHHHHHhc--cCCCeEE-EECchhhCC----cc
Confidence 3457889999996666666668876 246777666653 22 13445554 1224444 445887764 34
Q ss_pred CCcccEEEEcCCC
Q 041136 95 QMKFDVIIFNFPH 107 (214)
Q Consensus 95 ~~~FD~IiFNFPH 107 (214)
...||.||.|.|-
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 4579999999996
No 244
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=88.92 E-value=0.35 Score=39.07 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=50.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..|++.. ..+ |+.|..++..+ .+..|++.+.-..-..+..-|+.++. ...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~---~~v--~~vD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 144 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG---MRV--IAIDIDPVKIA---LARNNAEVYGIADKIEFICGDFLLLA-----SFLK 144 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT---CEE--EEEESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHG-----GGCC
T ss_pred CCCEEEECccccCHHHHHHHHcC---CEE--EEEECCHHHHH---HHHHHHHHcCCCcCeEEEECChHHhc-----ccCC
Confidence 67899999966656666677752 344 45664444432 36666655431112445556887764 2468
Q ss_pred ccEEEEcCCCCCC
Q 041136 98 FDVIIFNFPHAGH 110 (214)
Q Consensus 98 FD~IiFNFPH~G~ 110 (214)
||.|+.|.|..+.
T Consensus 145 ~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 145 ADVVFLSPPWGGP 157 (241)
T ss_dssp CSEEEECCCCSSG
T ss_pred CCEEEECCCcCCc
Confidence 9999999998764
No 245
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=88.61 E-value=4.9 Score=35.89 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.0
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCC
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA 108 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~ 108 (214)
...+++|......+ .|..|++...-.+...+..-|+.++.. ...||.||.|.|--
T Consensus 257 ~~v~GvDid~~al~---~Ar~Na~~~gl~~~I~~~~~D~~~l~~-----~~~fD~Iv~NPPYG 311 (384)
T 3ldg_A 257 LDISGFDFDGRMVE---IARKNAREVGLEDVVKLKQMRLQDFKT-----NKINGVLISNPPYG 311 (384)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCGGGCCC-----CCCSCEEEECCCCT
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChHHCCc-----cCCcCEEEECCchh
Confidence 34566675554442 577888766433446677789988753 24799999999963
No 246
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=88.58 E-value=1 Score=41.30 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=59.2
Q ss_pred CCCeEEEEecC-------chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 18 NNQRILLVGEG-------DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 18 ~~~~ILlVGeG-------nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
...+||-||=| .. .|+.+++.+.+...|++.=++.. .. ....++. +..-|+.++.-.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG-~Sl~la~~~fP~a~V~GVDiSp~--m~------------~~~~rI~-fv~GDa~dlpf~ 279 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGG-GSLRMWKSFFPRGQIYGLDIMDK--SH------------VDELRIR-TIQGDQNDAEFL 279 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCC-HHHHHHHHHCTTCEEEEEESSCC--GG------------GCBTTEE-EEECCTTCHHHH
T ss_pred CCCEEEEEecCCCcCCCCCH-HHHHHHHHhCCCCEEEEEECCHH--Hh------------hcCCCcE-EEEecccccchh
Confidence 46899999988 22 35557776644456665544433 11 1122343 445677775310
Q ss_pred CCCC--CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLS--QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~--~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+. ..+||.|+.+-=|. . .-...+|+.+..+|++||.+.|.
T Consensus 280 ~~l~~~d~sFDlVisdgsH~-------------~----~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 280 DRIARRYGPFDIVIDDGSHI-------------N----AHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHHHHCCEEEEEECSCCC-------------H----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhcccCCccEEEECCccc-------------c----hhHHHHHHHHHHhcCCCeEEEEE
Confidence 0010 46899999874331 0 11346788999999999998875
No 247
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=88.57 E-value=1.2 Score=37.42 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=57.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=-++..|++.. .+|+| .|..+++.+ ..++..-..+..-|+.++. +...+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~---~~v~g--vD~s~~ml~----------~a~~~~~v~~~~~~~e~~~----~~~~s 99 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF---ERVHA--VDPGEAQIR----------QALRHPRVTYAVAPAEDTG----LPPAS 99 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC---SEEEE--EESCHHHHH----------TCCCCTTEEEEECCTTCCC----CCSSC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC---CEEEE--EeCcHHhhh----------hhhhcCCceeehhhhhhhc----ccCCc
Confidence 45789999944444555577653 36655 564333322 1112222334445776653 56789
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.-..-. + ...|++.+..+|+|||.+.+.
T Consensus 100 fD~v~~~~~~h~~--------------~---~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 100 VDVAIAAQAMHWF--------------D---LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp EEEEEECSCCTTC--------------C---HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEeeehhHh--------------h---HHHHHHHHHHHcCCCCEEEEE
Confidence 9999986432111 1 135788899999999998554
No 248
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=88.56 E-value=4 Score=36.30 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH 125 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n 125 (214)
...+++|......+ .|..|++...-.+..-+..-|+.++.. ...||.||.|.|- |.. + ..
T Consensus 258 ~~V~GvDid~~ai~---~Ar~Na~~~gl~~~i~~~~~D~~~l~~-----~~~~D~Iv~NPPy-g~r----------l-~~ 317 (385)
T 3ldu_A 258 FKIYGYDIDEESID---IARENAEIAGVDEYIEFNVGDATQFKS-----EDEFGFIITNPPY-GER----------L-ED 317 (385)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHHTCGGGEEEEECCGGGCCC-----SCBSCEEEECCCC-CCS----------H-HH
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChhhcCc-----CCCCcEEEECCCC-cCc----------c-CC
Confidence 34556675554442 477787765322235566678887653 3479999999995 321 1 12
Q ss_pred HHHHHHHHHHHHhccCC--CCEEEEE
Q 041136 126 KNLLEAFLKNGREMLGE--GGEVHVT 149 (214)
Q Consensus 126 ~~LL~~Ff~Sa~~lL~~--~G~i~VT 149 (214)
.+-+..+++.-..+|++ +|.+.|.
T Consensus 318 ~~~l~~ly~~lg~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 318 KDSVKQLYKELGYAFRKLKNWSYYLI 343 (385)
T ss_dssp HHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 23344445444444444 7887554
No 249
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=88.01 E-value=0.78 Score=39.68 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeec---CChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSL---DSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~---ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
..+++.+||=|| -|.+|.. |++. + .|++.=. .+...+. . .. ++.+...++.++.++|++.+.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~--la~~-~---~V~gvD~~~~~~~~~~~--~-~~---~~~~~~~~v~~~~~~D~~~l~- 145 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYY--CGGL-K---NVREVKGLTKGGPGHEE--P-IP---MSTYGWNLVRLQSGVDVFFIP- 145 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHH--HHTS-T---TEEEEEEECCCSTTSCC--C-CC---CCSTTGGGEEEECSCCTTTSC-
T ss_pred CCCCCCEEEEEcCCCCHHHHH--HHhc-C---CEEEEeccccCchhHHH--H-HH---hhhcCCCCeEEEeccccccCC-
Confidence 356788999997 6666554 7765 2 5666322 1121110 0 00 011111246677677888764
Q ss_pred CCCCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 90 HPTLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.|+.|.+.. |.. ...+...+ ..+..+..+|+|||.+.+....+
T Consensus 146 -----~~~fD~V~sd~~~~~g~~----------~~d~~~~l-~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -----PERCDTLLCDIGESSPNP----------TVEAGRTL-RVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -----CCCCSEEEECCCCCCSSH----------HHHHHHHH-HHHHHHHHHCCTTCEEEEEESCC
T ss_pred -----cCCCCEEEECCccccCcc----------hhhHHHHH-HHHHHHHHHhCCCCEEEEEeCCC
Confidence 24799999998643 321 11122223 57788889999999887765544
No 250
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=87.51 E-value=3.6 Score=33.78 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCCCeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccC------
Q 041136 17 TNNQRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTM------ 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L------ 87 (214)
...++||.+|-| +|.. +|+ .. +..| ||.|+.++..+ .+.+|++..-- ..-..++-.||...
T Consensus 29 ~~a~~VLEiGtG---ySTl~lA~-~~-~g~V--vtvE~d~~~~~---~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 29 EEAEVILEYGSG---GSTVVAAE-LP-GKHV--TSVESDRAWAR---MMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HHCSEEEEESCS---HHHHHHHT-ST-TCEE--EEEESCHHHHH---HHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCB
T ss_pred hCCCEEEEECch---HHHHHHHH-cC-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCCCCceEEEEeCchhhhccccc
Confidence 357899999998 3433 344 31 2344 45555555542 35666654321 11133555676543
Q ss_pred ---------CCCC----CC-CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 88 ---------DRHP----TL-SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 88 ---------~~~~----~~-~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
.++. .+ ....||.|+-+ |.+ + ..++..+..+|++||.|
T Consensus 99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfID----g~k-----------~------~~~~~~~l~~l~~GG~I 150 (202)
T 3cvo_A 99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVD----GRF-----------R------VGCALATAFSITRPVTL 150 (202)
T ss_dssp SSSTTGGGTTHHHHGGGGCTTCCCCSEEEEC----SSS-----------H------HHHHHHHHHHCSSCEEE
T ss_pred ccchhhhhHHHHhhhhhccccCCCCCEEEEe----CCC-----------c------hhHHHHHHHhcCCCeEE
Confidence 1110 01 23679999877 332 1 14555577899999988
No 251
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=86.33 E-value=2.6 Score=35.56 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEE-ccccccCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLH-GVNVHTMDRHP 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~-~VDAt~L~~~~ 91 (214)
...++++||=||=|.=.|+..|++. ..|+|.=+... +....... + ..+.. ++.++. ..|++.|.
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m--~~~a~~~~---~-~~~~~~~~v~~~~~~~D~~~l~--- 137 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTL--GVGGHEVP---R-ITESYGWNIVKFKSRVDIHTLP--- 137 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECC--CCSSCCCC---C-CCCBTTGGGEEEECSCCTTTSC---
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECchh--hhhhhhhh---h-hhhccCCCeEEEecccCHhHCC---
Confidence 3467889999994444445557765 25776544431 11100000 0 00111 344432 56888764
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC--EEEEEecCCCCCCc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG--EVHVTLRDDHPYNQ 158 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G--~i~VTl~~~~Py~~ 158 (214)
..+||.|+.++.|+... . .+ .+...+. .+..+..+|+||| .+.+.... |+..
T Consensus 138 ---~~~fD~V~sd~~~~~~~---~-----~~-d~~~~l~-~L~~~~r~LkpGG~~~fv~kv~~--~~~~ 191 (265)
T 2oxt_A 138 ---VERTDVIMCDVGESSPK---W-----SV-ESERTIK-ILELLEKWKVKNPSADFVVKVLC--PYSV 191 (265)
T ss_dssp ---CCCCSEEEECCCCCCSC---H-----HH-HHHHHHH-HHHHHHHHHHHCTTCEEEEEESC--TTSH
T ss_pred ---CCCCcEEEEeCcccCCc---c-----ch-hHHHHHH-HHHHHHHHhccCCCeEEEEEeCC--CCCh
Confidence 46799999999865431 0 01 1111122 7788889999999 88776655 5543
No 252
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=85.95 E-value=7.3 Score=34.78 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=35.4
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCC
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPH 107 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH 107 (214)
...++.|......+ .|..|++...-.+..-+..-|+.++.. ...||.||.|.|-
T Consensus 264 ~~V~GvDid~~al~---~Ar~Na~~~gl~~~I~~~~~D~~~~~~-----~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 264 LNIIGGDIDARLIE---IAKQNAVEAGLGDLITFRQLQVADFQT-----EDEYGVVVANPPY 317 (393)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHTTCTTCSEEEECCGGGCCC-----CCCSCEEEECCCC
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChHhCCC-----CCCCCEEEECCCC
Confidence 34566675555442 477787765433334566678888753 2479999999996
No 253
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=85.82 E-value=0.71 Score=41.75 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhC------------CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFG------------SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHG 81 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~------------~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~ 81 (214)
....+||=.|=|.=+|..++++.+. ...++++.-++. +.. .-|..|+.. ... .+.+.+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~--~~~---~lA~~nl~l-~g~~~~~~~i~~- 242 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVV---TLASMNLYL-HGIGTDRSPIVC- 242 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHH---HHHHHHHHH-TTCCSSCCSEEE-
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCH--HHH---HHHHHHHHH-hCCCcCCCCEee-
Confidence 3467888766444445555666531 113455544443 222 134455442 212 223333
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHH-HhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK-RHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~-~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
-|+-.... ..+||.||-|.|..+.......-.+.... .....-..|++.+..+|+++|.+.+.+.+
T Consensus 243 gD~l~~~~-----~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 243 EDSLEKEP-----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CCTTTSCC-----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCCCCcc-----cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 34433221 23799999999988754321110000000 00001236888888999999998666543
No 254
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=85.75 E-value=5.6 Score=39.99 Aligned_cols=109 Identities=12% Similarity=-0.014 Sum_probs=68.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh---CC--CEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS---RG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---~g--~~Vl~~VDAt~L~~~~~ 92 (214)
...+||-||=|.=.++..|++..++... .+++|..+++.+ .|.+++..... .| -..+..-|++++.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~--VtGVDIS~emLe---~AReRLa~~lnAkr~gl~nVefiqGDa~dLp---- 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQT--IIGVDISPKGLA---RAAKMLHVKLNKEACNVKSATLYDGSILEFD---- 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCE--EEEEESCHHHHH---HHHHHHHHHTTTTCSSCSEEEEEESCTTSCC----
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCe--EEEEECCHHHHH---HHHHHhhhccchhhcCCCceEEEECchHhCC----
Confidence 6789999996666667778876533234 456674444442 36565554421 12 2445566787764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.+.--.- .....+..|++.+..+|+|| .+.|+.
T Consensus 792 ~~d~sFDlVV~~eVLeH--------------L~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEH--------------MEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp TTSCSCCEEEEESCGGG--------------SCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred cccCCeeEEEEeCchhh--------------CChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 34578999999643211 12335667888999999998 666664
No 255
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=85.36 E-value=3.3 Score=38.20 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCC----CEEEEcccc
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRG----CLVLHGVNV 84 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g----~~Vl~~VDA 84 (214)
....+++||=|| .|++++. +|...+. . -+++.|-.+++.+ -|..|++.+ +..| -.-+..-|+
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~--lA~~~g~--~-kVvGIDiS~~~le---lAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQ--VAAATNC--K-HHYGVEKADIPAK---YAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHH--HHHHCCC--S-EEEEEECCHHHHH---HHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred CCCCCCEEEEeCCCCCHHHHH--HHHHCCC--C-EEEEEeCCHHHHH---HHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 456788999999 6666655 6655542 2 3556675444432 355555443 2223 233445577
Q ss_pred ccCCCCCCCCC--CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 85 HTMDRHPTLSQ--MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 85 t~L~~~~~~~~--~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.++. +.. ..||.|+.|.+.... ..++.| . ....+|+|||.|.++
T Consensus 242 ~~lp----~~d~~~~aDVVf~Nn~~F~p------------dl~~aL-~----Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 242 LSEE----WRERIANTSVIFVNNFAFGP------------EVDHQL-K----ERFANMKEGGRIVSS 287 (438)
T ss_dssp TSHH----HHHHHHTCSEEEECCTTCCH------------HHHHHH-H----HHHTTSCTTCEEEES
T ss_pred cCCc----cccccCCccEEEEcccccCc------------hHHHHH-H----HHHHcCCCCcEEEEe
Confidence 7653 211 369999999875431 122333 2 234689999999654
No 256
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=84.65 E-value=9.4 Score=32.66 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.-..+++||++|-|..- ++..||+.+| .+++||+...+ +++.++++|+...+ -|...+.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~------------~~~~~~~lGa~~v~-~~~~~~~----- 232 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEH------------KKQDALSMGVKHFY-TDPKQCK----- 232 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSST------------THHHHHHTTCSEEE-SSGGGCC-----
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHH------------HHHHHHhcCCCeec-CCHHHHh-----
Confidence 35678999999988763 4555677775 37998875442 24456678886555 3433332
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-CCCCcccHhhHHHhcCCEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-HPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-~Py~~W~i~~lA~~~gl~l 172 (214)
. .+|.|+=. +|... -+..+..+|+++|++.+.=..+ .+....+...+....++.+
T Consensus 233 -~-~~D~vid~---~g~~~-------------------~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i 288 (348)
T 3two_A 233 -E-ELDFIIST---IPTHY-------------------DLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKV 288 (348)
T ss_dssp -S-CEEEEEEC---CCSCC-------------------CHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEE
T ss_pred -c-CCCEEEEC---CCcHH-------------------HHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEE
Confidence 2 68988743 33310 1233667889999986541111 2222234333332445555
Q ss_pred EE
Q 041136 173 KE 174 (214)
Q Consensus 173 ~~ 174 (214)
..
T Consensus 289 ~g 290 (348)
T 3two_A 289 YG 290 (348)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 257
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=84.44 E-value=2.4 Score=36.68 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=59.4
Q ss_pred EEcccccc-CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC----
Q 041136 79 LHGVNVHT-MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD---- 153 (214)
Q Consensus 79 l~~VDAt~-L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~---- 153 (214)
++.-|+.+ |. .+..++||.|+.+.|--..... ...+.. ...-...+...+..+..+|+++|.|.|.+.+.
T Consensus 17 ii~gD~~~~l~---~l~~~svDlI~tDPPY~~~~~~-~y~~~~-~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g 91 (323)
T 1boo_A 17 MYIGDSLELLE---SFPEESISLVMTSPPFALQRKK-EYGNLE-QHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKG 91 (323)
T ss_dssp EEESCHHHHGG---GSCSSCEEEEEECCCCSSSCSC-SSCSCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETT
T ss_pred EEeCcHHHHHh---hCCCCCeeEEEECCCCCCCccc-ccCCcC-HHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCC
Confidence 34456664 33 2456789999999998543211 111111 12334578889999999999999999987653
Q ss_pred CCCC---ccc-HhhHHHhcCCEEEEEecC
Q 041136 154 HPYN---QWN-VMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 ~Py~---~W~-i~~lA~~~gl~l~~~~~F 178 (214)
.|+. .|. +..+....|+.+......
T Consensus 92 ~~~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 92 VPARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp EEEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CcccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 2322 233 234557889988765544
No 258
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=83.96 E-value=2.8 Score=39.32 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcc-cHHH------------H--HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQ-DTNL------------I--KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~-~~~~------------i--~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~ 157 (214)
+...+||.||-|.|-.+........ +..+ + ..+-.+ .|++.+..+|+++|++-|.+-+|-...
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~--~Fl~~~l~~Lk~gGr~aiVlP~g~L~~ 402 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF--AWMLHMLYHLAPTGSMALLLANGSMSS 402 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH--HHHHHHHHTEEEEEEEEEEEETHHHHC
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH--HHHHHHHHHhccCceEEEEecchhhhc
Confidence 3457899999999997532111000 0000 0 011122 599999999999999866654433221
Q ss_pred ----cccHhhHHHhcCCEEEEEecCCCCCCCC
Q 041136 158 ----QWNVMGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 158 ----~W~i~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
.-.|.+.-.+.+. +...+.+....|.+
T Consensus 403 ~~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~ 433 (544)
T 3khk_A 403 NTNNEGEIRKTLVEQDL-VECMVALPGQLFTN 433 (544)
T ss_dssp CGGGHHHHHHHHHHTTC-EEEEEECCTTBCCS
T ss_pred CcchHHHHHHHHHhCCc-HhEEEECCCCCCCC
Confidence 1234443333333 44555566666654
No 259
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=83.62 E-value=2.1 Score=36.05 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-..+++||-||=|.=.++..|++.. ..++|.-.|. ++. +.+.++++. .+-..++.-|+.++.-......
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~--~~~---~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~ 95 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDR--DLV---AFLQKKYNQ---QKNITIYQNDALQFDFSSVKTD 95 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCH--HHH---HHHHHHHTT---CTTEEEEESCTTTCCGGGSCCS
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCH--HHH---HHHHHHHhh---CCCcEEEEcchHhCCHHHhccC
Confidence 4568899999955444555577653 3666655553 333 124444433 2333445558887642111224
Q ss_pred CcccEEEEcCCC
Q 041136 96 MKFDVIIFNFPH 107 (214)
Q Consensus 96 ~~FD~IiFNFPH 107 (214)
.+|| ||.|.|.
T Consensus 96 ~~~~-vv~NlPY 106 (255)
T 3tqs_A 96 KPLR-VVGNLPY 106 (255)
T ss_dssp SCEE-EEEECCH
T ss_pred CCeE-EEecCCc
Confidence 6788 9999997
No 260
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=83.28 E-value=2 Score=36.71 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+... + .+....+.....+......|+|||.+.+.+.+..
T Consensus 211 ~~~fDlI~crn--v------------liyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~~ 256 (274)
T 1af7_A 211 PGPFDAIFCRN--V------------MIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF 256 (274)
T ss_dssp CCCEEEEEECS--S------------GGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred CCCeeEEEECC--c------------hHhCCHHHHHHHHHHHHHHhCCCcEEEEEecccc
Confidence 35799999831 1 1223445567777788899999999998765543
No 261
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=83.22 E-value=2.5 Score=35.91 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEE-ccccccCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLH-GVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~-~VDAt~L~~~~~ 92 (214)
..++.+||=||=|-=.||..|++. + .|+|.=+... +.. +.++....+.. ++.++. ..|++.|.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~m--~~~----a~~~~~~~~~~~~~v~~~~~~~D~~~l~---- 145 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ-P---NVREVKAYTL--GTS----GHEKPRLVETFGWNLITFKSKVDVTKME---- 145 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS-T---TEEEEEEECC--CCT----TSCCCCCCCCTTGGGEEEECSCCGGGCC----
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc-C---CEEEEECchh--hhh----hhhchhhhhhcCCCeEEEeccCcHhhCC----
Confidence 457889999994433444557765 2 5766544331 110 00000000111 344432 56888764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC--EEEEEecCCCCCC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG--EVHVTLRDDHPYN 157 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G--~i~VTl~~~~Py~ 157 (214)
..+||.|+.++.|+... .. + .+...+. .+..+..+|+||| .+.+.... |+.
T Consensus 146 --~~~fD~Vvsd~~~~~~~---~~-----~-d~~~~l~-~L~~~~r~LkpGG~~~~v~~~~~--~~~ 198 (276)
T 2wa2_A 146 --PFQADTVLCDIGESNPT---AA-----V-EASRTLT-VLNVISRWLEYNQGCGFCVKVLN--PYS 198 (276)
T ss_dssp --CCCCSEEEECCCCCCSC---HH-----H-HHHHHHH-HHHHHHHHHHHSTTCEEEEEESC--CCS
T ss_pred --CCCcCEEEECCCcCCCc---hh-----h-hHHHHHH-HHHHHHHHhccCCCcEEEEEeCC--CCc
Confidence 46799999999865431 00 1 1111122 6788889999999 88776554 554
No 262
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=80.59 E-value=5.2 Score=33.22 Aligned_cols=83 Identities=8% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
..++||.|+.+.|---.......-. ....-..++...+..+..+|+++|.|+|.+.+ +..-.+..+..+.|+.+.
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~--~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d---~~~~~~~~~~~~~gf~~~ 94 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAFICQYLVSKGMIFQ 94 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCS--SHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHHHHHHHHHTTCEEE
T ss_pred cccccCEEEECCCCCCCcccccccC--CHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc---HHHHHHHHHHHhhcccee
Confidence 3468999999999853211000000 01234567888899999999999999888632 222234445567788887
Q ss_pred EEecCCCC
Q 041136 174 EKVEFLKQ 181 (214)
Q Consensus 174 ~~~~F~~~ 181 (214)
........
T Consensus 95 ~~iiW~K~ 102 (260)
T 1g60_A 95 NWITWDKR 102 (260)
T ss_dssp EEEEECCC
T ss_pred EEEEEEec
Confidence 76555443
No 263
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=78.82 E-value=8 Score=31.70 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+++||=||=|.=.|+..|++. + ...+ |+.|..++..+ .+ ++. ..+.+.-..|+..+.. ..+..
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g-~~~V--~gvDis~~ml~---~a------~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-G-AKLV--YALDVGTNQLA---WK------IRSDERVVVMEQFNFRNAVL-ADFEQ 101 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-T-CSEE--EEECSSCCCCC---HH------HHTCTTEEEECSCCGGGCCG-GGCCS
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-C-CCEE--EEEcCCHHHHH---HH------HHhCccccccccceEEEeCH-hHcCc
Confidence 35679999995554566668776 3 2344 55664333221 11 222 1233444445544431 11222
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------------CC---C----C
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------------DH---P----Y 156 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------------~~---P----y 156 (214)
..||.+.|+...... ..++..+..+|+|||.+.+.... |. | +
T Consensus 102 ~~~d~~~~D~v~~~l-------------------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~ 162 (232)
T 3opn_A 102 GRPSFTSIDVSFISL-------------------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQM 162 (232)
T ss_dssp CCCSEEEECCSSSCG-------------------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHH
T ss_pred CCCCEEEEEEEhhhH-------------------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHH
Confidence 346777777654321 45778889999999999886421 10 1 0
Q ss_pred CcccHhhHHHhcCCEEEEEe
Q 041136 157 NQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~ 176 (214)
..-.+..+++.+||.+....
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 11246678889999987753
No 264
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=78.67 E-value=3.6 Score=30.30 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++|+++|=|.+- .+|++.+. .+..+++...|. +.++.+++.|+.++.+ |+++........-..
T Consensus 6 ~~~v~I~G~G~iG--~~la~~L~~~g~~V~~id~~~------------~~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEAAG--VGLVRELTAAGKKVLAVDKSK------------EKIELLEDEGFDAVIA-DPTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSHHH--HHHHHHHHHTTCCEEEEESCH------------HHHHHHHHTTCEEEEC-CTTCHHHHHHSCCTT
T ss_pred CCEEEEECCCHHH--HHHHHHHHHCCCeEEEEECCH------------HHHHHHHHCCCcEEEC-CCCCHHHHHhCCccc
Confidence 4689999999854 44665542 245676655432 1355666678877665 777643211122346
Q ss_pred ccEEEEcCC
Q 041136 98 FDVIIFNFP 106 (214)
Q Consensus 98 FD~IiFNFP 106 (214)
.|.||.-.|
T Consensus 71 ~d~vi~~~~ 79 (141)
T 3llv_A 71 VSAVLITGS 79 (141)
T ss_dssp CSEEEECCS
T ss_pred CCEEEEecC
Confidence 899998766
No 265
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=76.81 E-value=4.1 Score=34.84 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC----CEE-EEcccc------
Q 041136 18 NNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG----CLV-LHGVNV------ 84 (214)
Q Consensus 18 ~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g----~~V-l~~VDA------ 84 (214)
.+.+||-||=| ..+-. +++.. ... .|+.|..++..+ .|.+......... ..+ +...|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~--~~~~~--~~~--v~GiD~S~~~l~---~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~ 118 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEK--YFYGE--IAL--LVATDPDADAIA---RGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV 118 (302)
T ss_dssp SCCEEEETTCTTTTTHHH--HHHTT--CSE--EEEEESCHHHHH---HHHHHHHHHCC----CCCEEEEEECCTTSSSHH
T ss_pred CCCeEEEEecCCcHhHHH--HHhcC--CCe--EEEEECCHHHHH---HHHHHHHhccccccccccccchhhhhcccchhh
Confidence 46899999944 33322 44332 223 567784444442 3554443331100 012 223333
Q ss_pred ccCCCCCCCCCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 85 HTMDRHPTLSQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 85 t~L~~~~~~~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
.+|.. .+...+||.|+..|- |..... .+ +..+++.+..+|+|||.+.++..
T Consensus 119 ~~l~~--~~~~~~FD~V~~~~~lhy~~~~-----------~~---~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 119 SSVRE--VFYFGKFNIIDWQFAIHYSFHP-----------RH---YATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp HHHHT--TCCSSCEEEEEEESCGGGTCST-----------TT---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhc--cccCCCeeEEEECchHHHhCCH-----------HH---HHHHHHHHHHHcCCCCEEEEEeC
Confidence 22221 133468999998763 212110 11 15789999999999999977753
No 266
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=74.91 E-value=1.9 Score=35.31 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+.+||-+|=|.=.++..|++.. ..++|.-.|.. +. ..+.++++ ...-..+..-|+.++. +.
T Consensus 26 ~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~--~~---~~a~~~~~---~~~~v~~~~~D~~~~~----~~ 90 (245)
T 1yub_A 26 NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSH--LF---NLSSEKLK---LNTRVTLIHQDILQFQ----FP 90 (245)
T ss_dssp CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCS--SS---SSSSCTTT---TCSEEEECCSCCTTTT----CC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHH--HH---HHHHHHhc---cCCceEEEECChhhcC----cc
Confidence 34577899999844434444477763 35666555542 22 12333333 1122334455887764 22
Q ss_pred -CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHH------HHH----HHHHhccCCCCEEEEE
Q 041136 95 -QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE------AFL----KNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 -~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~------~Ff----~Sa~~lL~~~G~i~VT 149 (214)
..+| .||.|.|..... . + -..++. .+| +.|..+|+++|.+.|.
T Consensus 91 ~~~~f-~vv~n~Py~~~~--------~-~--~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 91 NKQRY-KIVGNIPYHLST--------Q-I--IKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp CSSEE-EEEEECCSSSCH--------H-H--HHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred cCCCc-EEEEeCCccccH--------H-H--HHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 3578 899999987541 1 1 122332 233 6688899999886554
No 267
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=74.76 E-value=11 Score=31.60 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=60.6
Q ss_pred CCCeEEEEe--c---CchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC---
Q 041136 18 NNQRILLVG--E---GDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR--- 89 (214)
Q Consensus 18 ~~~~ILlVG--e---GnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~--- 89 (214)
...+||-|| . |+++ ..+++.. +... .|.+|...++.+ .+.+++ ...+..-+...|++++..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~--~~~~~~~-p~~~--v~~vD~sp~~l~---~Ar~~~---~~~~~v~~~~~D~~~~~~~~~ 145 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTH--EVAQSVN-PDAR--VVYVDIDPMVLT---HGRALL---AKDPNTAVFTADVRDPEYILN 145 (274)
T ss_dssp CCCEEEEETCCSCCSSCHH--HHHHHHC-TTCE--EEEEESSHHHHH---HHHHHH---TTCTTEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCChHH--HHHHHhC-CCCE--EEEEECChHHHH---HHHHhc---CCCCCeEEEEeeCCCchhhhc
Confidence 457999999 4 5553 3344443 3334 556675444432 244444 223445556667765421
Q ss_pred CC----CCCCCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 90 HP----TLSQMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 90 ~~----~~~~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.+ .+.-.+||.|+.+.= |+... -....++.+..+|++||.+.|+...
T Consensus 146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~----------------~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 146 HPDVRRMIDFSRPAAIMLVGMLHYLSPD----------------VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp SHHHHHHCCTTSCCEEEETTTGGGSCTT----------------THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred cchhhccCCCCCCEEEEEechhhhCCcH----------------HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 00 122247999998853 22210 1334667788899999999877654
No 268
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=74.36 E-value=16 Score=34.14 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=75.7
Q ss_pred CCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC----EEEEccccccCCCCC
Q 041136 18 NNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC----LVLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~----~Vl~~VDAt~L~~~~ 91 (214)
...+|| .+|-|.|--+ +++.+.........+.|...... .-|..|+. | .|+ .-+..-|+-... ++
T Consensus 221 ~~~~VlDPaCGSG~fLi~--a~~~l~~~~~~~i~G~Eid~~~~---~lA~~Nl~-l--~gi~~~~~~I~~gDtL~~d-~p 291 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLN--AKRYSRQPQTVVYFGQELNTSTY---NLARMNMI-L--HGVPIENQFLHNADTLDED-WP 291 (542)
T ss_dssp TTCEEEETTCTTSTTGGG--HHHHCSCTTTCEEEEEESCHHHH---HHHHHHHH-H--TTCCGGGEEEEESCTTTSC-SC
T ss_pred CCCEEeecccchhHHHHH--HHHHHHhccCceEEEEECcHHHH---HHHHHHHH-H--cCCCcCccceEecceeccc-cc
Confidence 456787 4567766544 56654321123344444433332 12444542 2 233 112222332221 12
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCc-ccHHHH--------HHhHHHHHHHHHHHHhccC-CCCEEEEEecCCCCCC---c
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSE-QDTNLI--------KRHKNLLEAFLKNGREMLG-EGGEVHVTLRDDHPYN---Q 158 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~-~~~~~i--------~~n~~LL~~Ff~Sa~~lL~-~~G~i~VTl~~~~Py~---~ 158 (214)
.....+||.||-|.|..+...+... .+..+. ..+-.+ .|++.+..+|+ ++|++-|-+-+|--+. .
T Consensus 292 ~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~--~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~ 369 (542)
T 3lkd_A 292 TQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADF--AFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAE 369 (542)
T ss_dssp CSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHH--HHHHHHHHTBCTTTCEEEEEEETHHHHCCTHH
T ss_pred ccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhH--HHHHHHHHHhCCCceeEEEEecchHhhCCchh
Confidence 3456789999999999864322111 000000 011122 59999999999 9999866544432111 1
Q ss_pred ccHhhHHHhcCCEEEEEecCCCCCCCC
Q 041136 159 WNVMGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 159 W~i~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
-.|.+.-.+.+ .+...+.+....|.|
T Consensus 370 ~~iRk~Lle~~-~l~~II~LP~~lF~~ 395 (542)
T 3lkd_A 370 GTIRKALLEEG-AIDTVIGLPANIFFN 395 (542)
T ss_dssp HHHHHHHHHTT-CEEEEEECCSSCSSS
T ss_pred HHHHHHHHhCC-ceeEEEEccccccCC
Confidence 22333222333 344455566666653
No 269
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=73.75 E-value=8 Score=32.55 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEecCch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..+.+++||+.|-|.. .++..||+..| .+++||+ .. + +++.++++|+...++ |+.++
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~-~-----------~~~~~~~lGa~~v~~-d~~~v------ 196 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-AS-L-----------SQALAAKRGVRHLYR-EPSQV------ 196 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SS-C-----------CHHHHHHHTEEEEES-SGGGC------
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-Ch-h-----------hHHHHHHcCCCEEEc-CHHHh------
Confidence 4567899999998876 45666788886 3899998 32 2 134456678766554 42222
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+|.|+ +. +|... +..+..+|+++|++.+.
T Consensus 197 -~~g~Dvv~-d~--~g~~~--------------------~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 197 -TQKYFAIF-DA--VNSQN--------------------AAALVPSLKANGHIICI 228 (315)
T ss_dssp -CSCEEEEE-CC-----------------------------TTGGGEEEEEEEEEE
T ss_pred -CCCccEEE-EC--CCchh--------------------HHHHHHHhcCCCEEEEE
Confidence 56688765 32 34310 12356778888887554
No 270
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=73.56 E-value=45 Score=32.04 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=56.0
Q ss_pred EEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhH
Q 041136 47 VASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHK 126 (214)
Q Consensus 47 ~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~ 126 (214)
..+++|......+ -|..|++..--.+...+..-|+.++... .....||.||.|.|- |...+ +. ..-.
T Consensus 258 ~i~G~Did~~av~---~A~~N~~~agv~~~i~~~~~D~~~~~~~--~~~~~~d~Iv~NPPY-G~Rlg--~~-----~~l~ 324 (703)
T 3v97_A 258 HFYGSDSDARVIQ---RARTNARLAGIGELITFEVKDVAQLTNP--LPKGPYGTVLSNPPY-GERLD--SE-----PALI 324 (703)
T ss_dssp CEEEEESCHHHHH---HHHHHHHHTTCGGGEEEEECCGGGCCCS--CTTCCCCEEEECCCC-CC-----CC-----HHHH
T ss_pred cEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChhhCccc--cccCCCCEEEeCCCc-ccccc--ch-----hHHH
Confidence 3445554444432 4667766543222356677888887531 223379999999997 43211 10 0113
Q ss_pred HHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEecC
Q 041136 127 NLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 127 ~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.|...+-+..+. +.+||++.|-.. .| .+.+..|+...++.++
T Consensus 325 ~ly~~l~~~lk~-~~~g~~~~ilt~--~~-------~l~~~~glk~~k~~~l 366 (703)
T 3v97_A 325 ALHSLLGRIMKN-QFGGWNLSLFSA--SP-------DLLSCLQLRADKQYKA 366 (703)
T ss_dssp HHHHHHHHHHHH-HCTTCEEEEEES--CH-------HHHHTTCCCEEEEEEE
T ss_pred HHHHHHHHHHHh-hCCCCeEEEEeC--CH-------HHHHHhCCCcccceee
Confidence 333333333332 348999865522 22 4555666665554433
No 271
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=70.50 E-value=5.8 Score=29.44 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
-.++|+++|=|.+-.+ |++.+. .+..+++...|.+ .++.+++.|+.++++ |+++.+......-.
T Consensus 6 ~~~~viIiG~G~~G~~--la~~L~~~g~~v~vid~~~~------------~~~~~~~~g~~~i~g-d~~~~~~l~~a~i~ 70 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSL--LGEKLLASDIPLVVIETSRT------------RVDELRERGVRAVLG-NAANEEIMQLAHLE 70 (140)
T ss_dssp CCSCEEEECCSHHHHH--HHHHHHHTTCCEEEEESCHH------------HHHHHHHTTCEEEES-CTTSHHHHHHTTGG
T ss_pred CCCCEEEECcCHHHHH--HHHHHHHCCCCEEEEECCHH------------HHHHHHHcCCCEEEC-CCCCHHHHHhcCcc
Confidence 4578999999998776 555432 2345665554432 245666789988775 66653321112235
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
..|.||.-.|.
T Consensus 71 ~ad~vi~~~~~ 81 (140)
T 3fwz_A 71 CAKWLILTIPN 81 (140)
T ss_dssp GCSEEEECCSC
T ss_pred cCCEEEEECCC
Confidence 68999987664
No 272
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=70.33 E-value=3.2 Score=38.77 Aligned_cols=86 Identities=17% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC---CcccHhh-HHHhcCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY---NQWNVMG-LADKLGL 170 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py---~~W~i~~-lA~~~gl 170 (214)
..+||.||-|.|..+........+-..-..+ .-..|++.+..+|+++|++-+.+.++--+ ..-.|.. |....
T Consensus 259 ~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~--~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~-- 334 (541)
T 2ar0_A 259 LPKAHIVATNPPFGSAAGTNITRTFVHPTSN--KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-- 334 (541)
T ss_dssp SCCEEEEEECCCCTTCSSCCCCSCCSSCCSC--HHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE--
T ss_pred ccCCeEEEECCCcccccchhhHhhcCCCCCc--hHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC--
Confidence 3579999999999875421100000000001 11368999999999999986665433111 1122333 33332
Q ss_pred EEEEEecCCCCCCC
Q 041136 171 VLKEKVEFLKQDFP 184 (214)
Q Consensus 171 ~l~~~~~F~~~~yP 184 (214)
.+...+.+....|+
T Consensus 335 ~l~~ii~Lp~~~F~ 348 (541)
T 2ar0_A 335 HLHTILRLPTGIFY 348 (541)
T ss_dssp EEEEEEECCSSCSS
T ss_pred CEEEEEEcCcCccc
Confidence 44555566666663
No 273
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=69.67 E-value=6.8 Score=31.49 Aligned_cols=77 Identities=10% Similarity=0.153 Sum_probs=38.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.++...++|+++|-|.+. ..|++.+.. ... .+..|..++. ++.++ .|+.++++ |+++.+.....
T Consensus 4 ~~~~~~~~viI~G~G~~G--~~la~~L~~-~g~-v~vid~~~~~----------~~~~~-~~~~~i~g-d~~~~~~l~~a 67 (234)
T 2aef_A 4 IDVAKSRHVVICGWSEST--LECLRELRG-SEV-FVLAEDENVR----------KKVLR-SGANFVHG-DPTRVSDLEKA 67 (234)
T ss_dssp ------CEEEEESCCHHH--HHHHHHSTT-SEE-EEEESCGGGH----------HHHHH-TTCEEEES-CTTCHHHHHHT
T ss_pred CCCCCCCEEEEECCChHH--HHHHHHHHh-CCe-EEEEECCHHH----------HHHHh-cCCeEEEc-CCCCHHHHHhc
Confidence 456677899999999665 448888743 234 5556654321 23334 56666654 66643211001
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
.-...|.||.--|
T Consensus 68 ~i~~ad~vi~~~~ 80 (234)
T 2aef_A 68 NVRGARAVIVDLE 80 (234)
T ss_dssp TCTTCSEEEECCS
T ss_pred CcchhcEEEEcCC
Confidence 1234566666544
No 274
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=68.25 E-value=16 Score=31.45 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=73.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++||=||=|.=.|+..|++. + +..|+| .|...+... ..++. ..+.++-..|+..+... .+...
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~a--VDvs~~mL~---------~a~r~~~rv~~~~~~ni~~l~~~-~l~~~ 150 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYA--VDVGTNQLV---------WKLRQDDRVRSMEQYNFRYAEPV-DFTEG 150 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T-CSEEEE--ECSSSSCSC---------HHHHTCTTEEEECSCCGGGCCGG-GCTTC
T ss_pred cccEEEecCCCccHHHHHHHhC-C-CCEEEE--EECCHHHHH---------HHHHhCcccceecccCceecchh-hCCCC
Confidence 5679999996666667678775 2 335655 453222221 01332 23344445666655421 13334
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------------CC---C----CC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------------DH---P----YN 157 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------------~~---P----y~ 157 (214)
.||.|+.+.-... |...+..+..+|+|||.+.+..+- |. | +.
T Consensus 151 ~fD~v~~d~sf~s-------------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~ 211 (291)
T 3hp7_A 151 LPSFASIDVSFIS-------------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKV 211 (291)
T ss_dssp CCSEEEECCSSSC-------------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHH
T ss_pred CCCEEEEEeeHhh-------------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHH
Confidence 5999999764331 144566788899999999876431 11 1 01
Q ss_pred cccHhhHHHhcCCEEEEEe
Q 041136 158 QWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 158 ~W~i~~lA~~~gl~l~~~~ 176 (214)
.-++..+++.+||.+....
T Consensus 212 ~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 212 LETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 2235677888999987743
No 275
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=67.56 E-value=18 Score=30.17 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|= |.. -+++|+.+. .+.+|+++..+.+.... ...+.++..|. ...+.+|.++.+....+
T Consensus 46 ~gk~vlVTGas~GI--G~aia~~la~~G~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 46 KGKNVLITGGDSGI--GRAVSIAFAKEGANIAIAYLDEEGDAN-------ETKQYVEKEGVKCVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp TTCEEEEETTTSHH--HHHHHHHHHHTTCEEEEEESSCHHHHH-------HHHHHHHTTTCCEEEEESCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEeCCchHHHH-------HHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 4578999993 433 333554431 24689998888754322 22344555554 45677888875432111
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 -----SQMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 -----~~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.-.+.|.+|-|==.........+... ..+..|-.=.....+.+...++.+|.|..+
T Consensus 117 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 11368999887322111111111111 112223222334455666677778887444
No 276
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=64.86 E-value=9.7 Score=30.23 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCCCCeEEEEecCch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+....+||.||-|.. -=|..|+++.+ .+|+||=+...+. . .+--|+.+ +.+
T Consensus 32 ~~~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av---------~------------~v~dDiF~----P~~ 84 (153)
T 2k4m_A 32 CSGPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHG---------G------------IVRDDITS----PRM 84 (153)
T ss_dssp HSCSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSST---------T------------EECCCSSS----CCH
T ss_pred cCCCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCcccc---------c------------eEEccCCC----Ccc
Confidence 4566789999999999 68988998764 5788886654321 1 44556654 223
Q ss_pred CC-CcccEE-EEcCCC
Q 041136 94 SQ-MKFDVI-IFNFPH 107 (214)
Q Consensus 94 ~~-~~FD~I-iFNFPH 107 (214)
.. ..||.| -||.|=
T Consensus 85 ~~Y~~~DLIYsirPP~ 100 (153)
T 2k4m_A 85 EIYRGAALIYSIRPPA 100 (153)
T ss_dssp HHHTTEEEEEEESCCT
T ss_pred cccCCcCEEEEcCCCH
Confidence 32 479999 899984
No 277
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=63.43 E-value=4.9 Score=36.24 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=44.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
...+|+++|=|.|.-. +++.+. .+..+++.-.|. + .++.++..|+.|++| |||+.+-.....-.
T Consensus 3 ~~~~viIiG~Gr~G~~--va~~L~~~g~~vvvId~d~--~----------~v~~~~~~g~~vi~G-Dat~~~~L~~agi~ 67 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQI--TGRLLLSSGVKMVVLDHDP--D----------HIETLRKFGMKVFYG-DATRMDLLESAGAA 67 (413)
T ss_dssp -CCSEEEECCSHHHHH--HHHHHHHTTCCEEEEECCH--H----------HHHHHHHTTCCCEES-CTTCHHHHHHTTTT
T ss_pred CCCeEEEECCCHHHHH--HHHHHHHCCCCEEEEECCH--H----------HHHHHHhCCCeEEEc-CCCCHHHHHhcCCC
Confidence 4568999999997776 655542 234565554442 2 255566778888877 88875421112234
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
..|.||--.|.
T Consensus 68 ~A~~viv~~~~ 78 (413)
T 3l9w_A 68 KAEVLINAIDD 78 (413)
T ss_dssp TCSEEEECCSS
T ss_pred ccCEEEECCCC
Confidence 56777765553
No 278
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=62.36 E-value=24 Score=30.40 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
....+++||++|-|-.- ++..||+.+| ...|++|..+.+ .++.++++|+...++.+. .++.+.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~~~v 258 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGE------------KFPKAKALGATDCLNPRELDKPVQDVI 258 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG------------GHHHHHHTTCSEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHH------------HHHHHHHhCCcEEEccccccchHHHHH
Confidence 45678999999987653 4556678775 336888865432 244556678765544321 111110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
..+....+|.||=. +|.. ..+..+.++|+++ |++.+.
T Consensus 259 ~~~~~~g~Dvvid~---~G~~-------------------~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 259 TELTAGGVDYSLDC---AGTA-------------------QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHTSCBSEEEES---SCCH-------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCccEEEEC---CCCH-------------------HHHHHHHHHhhcCCCEEEEE
Confidence 00112368988642 3420 1244567889999 997543
No 279
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=61.47 E-value=6.6 Score=31.51 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC--CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG--SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~ 93 (214)
..++||+.| -|.. ..+|++.+. .+.+|++++.+... ..+.++.|+..|. ...+.+|.++......+
T Consensus 3 ~~k~vlITGasggI--G~~~a~~L~~~~g~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~ 72 (276)
T 1wma_A 3 GIHVALVTGGNKGI--GLAIVRDLCRLFSGDVVLTARDVTR--------GQAAVQQLQAEGLSPRFHQLDIDDLQSIRAL 72 (276)
T ss_dssp CCCEEEESSCSSHH--HHHHHHHHHHHSSSEEEEEESSHHH--------HHHHHHHHHHTTCCCEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHhcCCeEEEEeCChHH--------HHHHHHHHHhcCCeeEEEECCCCCHHHHHHH
Confidence 457899998 3333 333444431 24689988876431 2233455555443 34567788875431111
Q ss_pred -C-----CCcccEEEEcCCCCCCCC-CCC--cccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 -S-----QMKFDVIIFNFPHAGHSP-PLS--EQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 -~-----~~~FD~IiFNFPH~G~~~-~~~--~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ...+|.||.|==...... ... +.-...+..|-.-.....+.+.+.++++|.|..+
T Consensus 73 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 73 RDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp HHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 1 126898887632111110 001 1111112223333334455566666666776443
No 280
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.37 E-value=9 Score=29.45 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=41.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-C-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-CC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-S-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-SQ 95 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~~ 95 (214)
+++|+++|=|.+--. +++.+. . +..+++...|. + .++.+++.|+.++++ |+++.+..... .-
T Consensus 39 ~~~v~IiG~G~~G~~--~a~~L~~~~g~~V~vid~~~--~----------~~~~~~~~g~~~~~g-d~~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGRIGTG--AYDELRARYGKISLGIEIRE--E----------AAQQHRSEGRNVISG-DATDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSHHHHH--HHHHHHHHHCSCEEEEESCH--H----------HHHHHHHTTCCEEEC-CTTCHHHHHTBCSC
T ss_pred CCcEEEECCCHHHHH--HHHHHHhccCCeEEEEECCH--H----------HHHHHHHCCCCEEEc-CCCCHHHHHhccCC
Confidence 568999999988665 333321 1 24566654432 1 244566678887765 66542211112 23
Q ss_pred CcccEEEEcCC
Q 041136 96 MKFDVIIFNFP 106 (214)
Q Consensus 96 ~~FD~IiFNFP 106 (214)
...|.||.--|
T Consensus 104 ~~ad~vi~~~~ 114 (183)
T 3c85_A 104 GHVKLVLLAMP 114 (183)
T ss_dssp CCCCEEEECCS
T ss_pred CCCCEEEEeCC
Confidence 45899998655
No 281
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=60.05 E-value=29 Score=29.91 Aligned_cols=97 Identities=9% Similarity=0.051 Sum_probs=56.8
Q ss_pred EEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-
Q 041136 77 LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP- 155 (214)
Q Consensus 77 ~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P- 155 (214)
.|+..-||.+.-+ .+..++||.|+...|--.......+. ..-..++...+..+..+|+++|.|.|..-+-.-
T Consensus 40 ~l~i~gD~l~~L~--~l~~~svDlI~tDPPY~~~~d~~~~~-----~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~ 112 (319)
T 1eg2_A 40 HVYDVCDCLDTLA--KLPDDSVQLIICDPPYNIMLADWDDH-----MDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQG 112 (319)
T ss_dssp EEEEECCHHHHHH--TSCTTCEEEEEECCCSBCCGGGGGTC-----SSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCC
T ss_pred eEEECCcHHHHHH--hCccCCcCEEEECCCCCCCCCCccCH-----HHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccc
Confidence 4442677765322 24567899999999985431000000 112346778888899999999999887543211
Q ss_pred -CCcccH---hhHHHhcC-CEEEEEecCCC
Q 041136 156 -YNQWNV---MGLADKLG-LVLKEKVEFLK 180 (214)
Q Consensus 156 -y~~W~i---~~lA~~~g-l~l~~~~~F~~ 180 (214)
...+++ ..+....| +.+...+....
T Consensus 113 ~~~~~~l~~l~~~i~~~G~~~~~~~IIW~K 142 (319)
T 1eg2_A 113 EAGSGDLISIISHMRQNSKMLLANLIIWNY 142 (319)
T ss_dssp CTTBCCHHHHHHHHHHHCCCEEEEEEEEEC
T ss_pred ccccccHHHHHHHHhCcccceeEEEEEEEC
Confidence 112233 23334456 88877665543
No 282
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=59.88 E-value=5.3 Score=34.52 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=47.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~~~ 95 (214)
.++.+||=+|=|.=.+|..|++.++ +..| +++|..++..+ .+.+|++... ..+ .+..-|+.+|... .....
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~-~~~V--igvD~d~~al~---~A~~~~~~~g-~~v-~~v~~d~~~l~~~l~~~g~ 96 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP-GCRI--IGIDVDSEVLR---IAEEKLKEFS-DRV-SLFKVSYREADFLLKTLGI 96 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-TCEE--EEEESCHHHHH---HHHHHTGGGT-TTE-EEEECCGGGHHHHHHHTTC
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHhcC-CcE-EEEECCHHHHHHHHHhcCC
Confidence 4678898887554455556888874 3344 55664444332 3566655432 233 3444577766421 00112
Q ss_pred CcccEEEEcCCC
Q 041136 96 MKFDVIIFNFPH 107 (214)
Q Consensus 96 ~~FD~IiFNFPH 107 (214)
.+||.|++|.|.
T Consensus 97 ~~~D~Vl~D~gv 108 (301)
T 1m6y_A 97 EKVDGILMDLGV 108 (301)
T ss_dssp SCEEEEEEECSC
T ss_pred CCCCEEEEcCcc
Confidence 579999999984
No 283
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=58.10 E-value=4.6 Score=33.90 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=44.2
Q ss_pred CCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChH-------HHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 17 TNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSER-------TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~-------~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
..+.+||=+| -|.+|+. ||+. + ..|+ +.|..+ +.. ..+..|++...-.+-..+..-|+.++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~--lA~~-g--~~V~--~vD~s~~~~~ll~~~l---~~a~~n~~~~~~~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFV--LASL-G--LTVT--AFEQHPAVACLLSDGI---RRALLNPETQDTAARINLHFGNAAEQ 151 (258)
T ss_dssp GGCCCEEETTCTTCHHHHH--HHHT-T--CCEE--EEECCHHHHHHHHHHH---HHHHHSHHHHHHHTTEEEEESCHHHH
T ss_pred CCcCeEEEeeCccCHHHHH--HHHh-C--CEEE--EEECChhhhHHHHHHH---HHHHhHHHhhCCccCeEEEECCHHHH
Confidence 4567898887 5555554 7764 3 3554 555444 222 23556665544323234455577653
Q ss_pred CCCCCCCC--CcccEEEEcCCCCC
Q 041136 88 DRHPTLSQ--MKFDVIIFNFPHAG 109 (214)
Q Consensus 88 ~~~~~~~~--~~FD~IiFNFPH~G 109 (214)
-. .+.. .+||.|++|.|...
T Consensus 152 l~--~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 152 MP--ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HH--HHHHHHCCCSEEEECCCC--
T ss_pred HH--hhhccCCCccEEEECCCCCC
Confidence 11 1222 57999999976543
No 284
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=58.02 E-value=28 Score=29.86 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
....+++||++|-|..- ++..||+..| ...|+||..+.+ .++.++++|+...++.+. .++.+.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~~~v 253 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKD------------KFARAKEFGATECINPQDFSKPIQEVL 253 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGG------------GHHHHHHHTCSEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHH------------HHHHHHHcCCceEeccccccccHHHHH
Confidence 45678999999987653 4556678776 336888865432 133445567754443321 111100
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
..+....+|.||=. +|.. ..+..+.++|+++ |++.+.
T Consensus 254 ~~~~~~g~D~vid~---~g~~-------------------~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 254 IEMTDGGVDYSFEC---IGNV-------------------KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHTTSCBSEEEEC---SCCH-------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEEC---CCcH-------------------HHHHHHHHhhccCCcEEEEE
Confidence 00112368988743 2320 1134577889999 997543
No 285
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=57.84 E-value=28 Score=28.38 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+++||-||=|.=.++..|++.. ..++| .|..+++.+ .+.+++.. .+-..++.-|+.++.-. ..
T Consensus 28 ~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~--vD~~~~~~~---~a~~~~~~---~~~v~~~~~D~~~~~~~---~~ 93 (244)
T 1qam_A 28 LNEHDNIFEIGSGKGHFTLELVQRC---NFVTA--IEIDHKLCK---TTENKLVD---HDNFQVLNKDILQFKFP---KN 93 (244)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS---SEEEE--ECSCHHHHH---HHHHHTTT---CCSEEEECCCGGGCCCC---SS
T ss_pred CCCCCEEEEEeCCchHHHHHHHHcC---CeEEE--EECCHHHHH---HHHHhhcc---CCCeEEEEChHHhCCcc---cC
Confidence 4578899999966666666688764 35555 554343331 24444432 23344555688876421 12
Q ss_pred CcccEEEEcCCCC
Q 041136 96 MKFDVIIFNFPHA 108 (214)
Q Consensus 96 ~~FD~IiFNFPH~ 108 (214)
..| .||.|.|..
T Consensus 94 ~~~-~vv~nlPy~ 105 (244)
T 1qam_A 94 QSY-KIFGNIPYN 105 (244)
T ss_dssp CCC-EEEEECCGG
T ss_pred CCe-EEEEeCCcc
Confidence 345 799999984
No 286
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=57.71 E-value=14 Score=27.47 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=44.5
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++|+++|=|.+.-. |++.+. .+..+++...|..+.+ +.+......|+.++++ |+++........-..
T Consensus 3 ~~~vlI~G~G~vG~~--la~~L~~~g~~V~vid~~~~~~~--------~~~~~~~~~~~~~i~g-d~~~~~~l~~a~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGHSILAIN--TILQLNQRGQNVTVISNLPEDDI--------KQLEQRLGDNADVIPG-DSNDSSVLKKAGIDR 71 (153)
T ss_dssp CSCEEEECCSHHHHH--HHHHHHHTTCCEEEEECCCHHHH--------HHHHHHHCTTCEEEES-CTTSHHHHHHHTTTT
T ss_pred CCcEEEECCCHHHHH--HHHHHHHCCCCEEEEECCChHHH--------HHHHHhhcCCCeEEEc-CCCCHHHHHHcChhh
Confidence 467999999988765 555432 2456777766543221 1233334457888775 676533211111245
Q ss_pred ccEEEEcCC
Q 041136 98 FDVIIFNFP 106 (214)
Q Consensus 98 FD~IiFNFP 106 (214)
.|.||.--|
T Consensus 72 ad~vi~~~~ 80 (153)
T 1id1_A 72 CRAILALSD 80 (153)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEecC
Confidence 788887654
No 287
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=56.59 E-value=31 Score=29.10 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++ +||-||=|.=.++..|++.. ..++|.-.|.. +. +.+.+++. ..++.+++ -|+.++.-. ..
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~--~~---~~l~~~~~---~~~v~vi~-~D~l~~~~~---~~ 108 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLR--LR---PVLEETLS---GLPVRLVF-QDALLYPWE---EV 108 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGG--GH---HHHHHHTT---TSSEEEEE-SCGGGSCGG---GS
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHH--HH---HHHHHhcC---CCCEEEEE-CChhhCChh---hc
Confidence 3456 99999955555666688763 46877776653 21 12333332 23445544 488776421 11
Q ss_pred CcccEEEEcCCCCC
Q 041136 96 MKFDVIIFNFPHAG 109 (214)
Q Consensus 96 ~~FD~IiFNFPH~G 109 (214)
..+|.||-|.|..-
T Consensus 109 ~~~~~iv~NlPy~i 122 (271)
T 3fut_A 109 PQGSLLVANLPYHI 122 (271)
T ss_dssp CTTEEEEEEECSSC
T ss_pred cCccEEEecCcccc
Confidence 25899999999854
No 288
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=55.84 E-value=20 Score=27.17 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=37.3
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecCCh---HHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLDSE---RTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ds~---~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
.|++++=|+ ||.+|+.. +|...++.|-++... +++.++ ..+-++.+...|+.|+.++
T Consensus 7 ~iiivsHG~--~A~gl~~~~~~i~G~~~~i~ai~~~~~~~~~~~~~~---i~~~i~~~~~~gvliLtDl 70 (142)
T 3bed_A 7 KLILMSHGR--MAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAK---LAAILKEAGNVPTLVLADL 70 (142)
T ss_dssp EEEEEEETT--HHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHH---HHHHHHHHCSCCEEEEESS
T ss_pred cEEEEcChH--HHHHHHHHHHHHcCCCCCEEEEEecCCCCHHHHHHH---HHHHHHhcCCCCEEEEEEC
Confidence 699999996 78888654 465568888877533 345443 3445566644566776554
No 289
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=55.83 E-value=7.4 Score=33.22 Aligned_cols=72 Identities=10% Similarity=0.214 Sum_probs=40.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
..++|+++|-|.+... +++.+.. ... .+..|..++. ++ +++.|+.+++| |+++.+......-..
T Consensus 114 ~~~~viI~G~G~~g~~--l~~~L~~-~g~-v~vid~~~~~----------~~-~~~~~~~~i~g-d~~~~~~L~~a~i~~ 177 (336)
T 1lnq_A 114 KSRHVVICGWSESTLE--CLRELRG-SEV-FVLAEDENVR----------KK-VLRSGANFVHG-DPTRVSDLEKANVRG 177 (336)
T ss_dssp --CEEEEESCCHHHHH--HHTTGGG-SCE-EEEESCGGGH----------HH-HHHTTCEEEES-CTTSHHHHHHTCSTT
T ss_pred ccCCEEEECCcHHHHH--HHHHHHh-CCc-EEEEeCChhh----------hh-HHhCCcEEEEe-CCCCHHHHHhcChhh
Confidence 3678999999988755 7777642 233 5555654332 33 44567887776 777543211112244
Q ss_pred ccEEEEcC
Q 041136 98 FDVIIFNF 105 (214)
Q Consensus 98 FD~IiFNF 105 (214)
.|.||---
T Consensus 178 a~~vi~~~ 185 (336)
T 1lnq_A 178 ARAVIVDL 185 (336)
T ss_dssp EEEEEECC
T ss_pred ccEEEEcC
Confidence 66666543
No 290
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=55.77 E-value=4.1 Score=35.75 Aligned_cols=137 Identities=23% Similarity=0.245 Sum_probs=76.0
Q ss_pred CeEEEEecC-chhHHHHH--HHHhCCCCcEEEeecCChHHHHhcCcc----HHHHHHHH-HhC----CC----EEEEccc
Q 041136 20 QRILLVGEG-DFSFSDCL--ARAFGSATNMVASSLDSERTLKTKHWT----SQAHLQSL-WSR----GC----LVLHGVN 83 (214)
Q Consensus 20 ~~ILlVGeG-nFSFS~sL--a~~~~~~~~l~ATs~ds~~~l~~kY~~----a~~ni~~L-~~~----g~----~Vl~~VD 83 (214)
-+||.+|=| .+-|.+++ +...++...|-.+|+|... .+.+|. ..+-.+.| ... +. .+++| |
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~p--l~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G-D 174 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKEL--LKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG-D 174 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSC--CSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES-C
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHH--HHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec-h
Confidence 468999855 35555555 3345556678888887521 122221 11112222 111 11 22333 4
Q ss_pred ccc-CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCCCEEEEEecCCCCCCcc-c
Q 041136 84 VHT-MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEGGEVHVTLRDDHPYNQW-N 160 (214)
Q Consensus 84 At~-L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W-~ 160 (214)
|.+ |.+ +...+||.|.++ |+.. ..|.+| =..+|+....+++++|. .+| |+.= .
T Consensus 175 a~~~l~~---l~~~~~Da~flD----gFsP----------~kNPeLWs~e~f~~l~~~~~pgg~-laT------Ytaag~ 230 (308)
T 3vyw_A 175 ARKRIKE---VENFKADAVFHD----AFSP----------YKNPELWTLDFLSLIKERIDEKGY-WVS------YSSSLS 230 (308)
T ss_dssp HHHHGGG---CCSCCEEEEEEC----CSCT----------TTSGGGGSHHHHHHHHTTEEEEEE-EEE------SCCCHH
T ss_pred HHHHHhh---hcccceeEEEeC----CCCc----------ccCcccCCHHHHHHHHHHhCCCcE-EEE------EeCcHH
Confidence 433 332 445579999995 3321 234555 35788888899999875 456 4432 3
Q ss_pred HhhHHHhcCCEEEEEecCCCCCCCCCccccC
Q 041136 161 VMGLADKLGLVLKEKVEFLKQDFPGYHNKRG 191 (214)
Q Consensus 161 i~~lA~~~gl~l~~~~~F~~~~yPgY~~~rt 191 (214)
|......+||.+.+ -||+..||.
T Consensus 231 VRR~L~~aGF~V~k--------~~G~g~KRe 253 (308)
T 3vyw_A 231 VRKSLLTLGFKVGS--------SREIGRKRK 253 (308)
T ss_dssp HHHHHHHTTCEEEE--------EECC---CE
T ss_pred HHHHHHHCCCEEEe--------cCCCCCCCc
Confidence 55567789999987 588888775
No 291
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=55.26 E-value=34 Score=27.84 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=61.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
.++++|+.|=+. -.-+++|+.+. .+.+|+++...+.+.+. +..++++..|. ...+.+|.++......+ .
T Consensus 17 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 17 DGKVALVTGSGR-GIGAAVAVHLGRLGAKVVVNYANSTKDAE-------KVVSEIKALGSDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCEEEESCTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHH-------HHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHH-------HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 467889888332 12333554431 34688887766654332 33455666554 55677888875542111 0
Q ss_pred -----CCcccEEEEcCCCCCCCCCCCcccHH----HHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 -----QMKFDVIIFNFPHAGHSPPLSEQDTN----LIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G~~~~~~~~~~~----~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
-.+.|.+|.|=- ........+...+ .+..|-.=.....+.+.+.+.++|.|..+
T Consensus 89 ~~~~~~g~id~lvnnAg-~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSG-VVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp HHHHHHSCCCEEECCCC-CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHcCCCCEEEECCC-CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 136788886632 2111122221111 12222222223345556667778887544
No 292
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=55.13 E-value=8.8 Score=31.21 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=47.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|=.++-.-+++++.+. .+.+|++++.+.+. ..+..++|++.+ ....+.+|.++.+....+
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERR--------LGETRDQLADLGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHH--------HHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHH
Confidence 467899999633444555665532 34689888876532 233455665543 466778898875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.||.|=
T Consensus 93 ~~~~~~~g~id~li~~A 109 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNA 109 (266)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHhCCCcEEEECC
Confidence 013689888774
No 293
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=55.05 E-value=65 Score=26.63 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=61.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|.. -+++|+.+. .+.+|+++..+..++. .+...+.++..|. ...+.+|.++.+....+
T Consensus 48 ~~k~vlVTGas~GI--G~aia~~la~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 119 (294)
T 3r3s_A 48 KDRKALVTGGDSGI--GRAAAIAYAREGADVAINYLPAEEED------AQQVKALIEECGRKAVLLPGDLSDESFARSLV 119 (294)
T ss_dssp TTCEEEEETTTSHH--HHHHHHHHHHTTCEEEEECCGGGHHH------HHHHHHHHHHTTCCEEECCCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEeCCcchhH------HHHHHHHHHHcCCcEEEEEecCCCHHHHHHHH
Confidence 467899999 3333 333444431 2467888877643221 1222334455554 45567888875432111
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 -----SQMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 -----~~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.-.+.|.+|.|=-..+......+... ..+..|-.=.....+.+...+..+|.|..+
T Consensus 120 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 120 HKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 01368998887432221111222111 112223222334455566677778887444
No 294
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=54.59 E-value=38 Score=27.56 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=63.8
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~~ 94 (214)
.++++|+.|= |.. -+++|+.+. .+.+|+++....... ...++..++++..|..+ .+.+|.++.+....+-
T Consensus 10 ~~k~vlVTGas~GI--G~aia~~la~~G~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 82 (262)
T 3ksu_A 10 KNKVIVIAGGIKNL--GALTAKTFALESVNLVLHYHQAKDS-----DTANKLKDELEDQGAKVALYQSDLSNEEEVAKLF 82 (262)
T ss_dssp TTCEEEEETCSSHH--HHHHHHHHTTSSCEEEEEESCGGGH-----HHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHH
T ss_pred CCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEecCccCH-----HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 3578899983 333 445666653 356788876543221 12334556677667644 5678888755421111
Q ss_pred ------CCcccEEEEcCCCCCCCCCCCcccHH----HHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 ------QMKFDVIIFNFPHAGHSPPLSEQDTN----LIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ------~~~FD~IiFNFPH~G~~~~~~~~~~~----~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
-.+.|.+|.|==-... ....+...+ .+..|-.-.....+.+.+.|+.+|.|...
T Consensus 83 ~~~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 83 DFAEKEFGKVDIAINTVGKVLK-KPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HHHHHHHCSEEEEEECCCCCCS-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1368988877322211 122222211 12223222333455555666677887444
No 295
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=54.48 E-value=8.1 Score=31.68 Aligned_cols=95 Identities=11% Similarity=0.102 Sum_probs=44.5
Q ss_pred CCccccCccccccCCCCCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EE
Q 041136 2 PQKKSNKKVKWISHYTNNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LV 78 (214)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~V 78 (214)
|+.....+..++.+.++.++||+.| -|.. -++||+.+. .+.+|+.+.-.+.+.+ ++..+.+++.+. ..
T Consensus 9 ~~~~~~~~n~~~~~m~~~k~vlITGas~gI--G~a~a~~l~~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 79 (272)
T 4e3z_A 9 SGVDLGTENLYFQSMSDTPVVLVTGGSRGI--GAAVCRLAARQGWRVGVNYAANREAA-------DAVVAAITESGGEAV 79 (272)
T ss_dssp ---------------CCSCEEEETTTTSHH--HHHHHHHHHHTTCEEEEEESSCHHHH-------HHHHHHHHHTTCEEE
T ss_pred CCCCCCChhhhhhhccCCCEEEEECCCchH--HHHHHHHHHHCCCEEEEEcCCChhHH-------HHHHHHHHhcCCcEE
Confidence 3445555566667777888999999 4433 334555431 2457776644444332 223455555554 44
Q ss_pred EEccccccCCCCCCC-C-----CCcccEEEEcC
Q 041136 79 LHGVNVHTMDRHPTL-S-----QMKFDVIIFNF 105 (214)
Q Consensus 79 l~~VDAt~L~~~~~~-~-----~~~FD~IiFNF 105 (214)
.+.+|.++......+ . -.+.|.||.|=
T Consensus 80 ~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA 112 (272)
T 4e3z_A 80 AIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA 112 (272)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred EEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence 567788875432111 0 13689888773
No 296
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=52.39 E-value=11 Score=32.54 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred CCCeEEEEe-cCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC-CCCCC
Q 041136 18 NNQRILLVG-EGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR-HPTLS 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~-~~~~~ 94 (214)
.+++||++| -|..- ++..||+.++ +..|+||+.+.+ .++.++++|+...++-.. ++.+ -..+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~------------~~~~~~~lGad~vi~~~~-~~~~~v~~~~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPE------------TQEWVKSLGAHHVIDHSK-PLAAEVAALG 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHH------------HHHHHHHTTCSEEECTTS-CHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHH------------HHHHHHHcCCCEEEeCCC-CHHHHHHHhc
Confidence 678999999 88774 4556677754 358999875432 355567788866554321 1110 01123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+|.|+= .+|. . .-+..+..+|+++|++.+.
T Consensus 237 ~~g~Dvvid---~~g~---------------~----~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 237 LGAPAFVFS---TTHT---------------D----KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp SCCEEEEEE---CSCH---------------H----HHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEE---CCCc---------------h----hhHHHHHHHhcCCCEEEEE
Confidence 457886654 2342 1 1234567789999998654
No 297
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=52.20 E-value=6.2 Score=35.29 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.0
Q ss_pred HHHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 121 LIKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 121 ~i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
+|.-|++| |..++..|..+|++||++ .||
T Consensus 243 RI~VN~EL~~L~~~L~~a~~~L~~gGRl~VIS 274 (347)
T 3tka_A 243 RIWVNSELEEIEQALKSSLNVLAPGGRLSIIS 274 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 46668888 999999999999999998 555
No 298
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=51.15 E-value=56 Score=26.22 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=41.4
Q ss_pred CeEEEEecCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 20 QRILLVGEGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
++||+.| +.| ...+|++.+ ..+.+|++++.+... .+.+...++.++ ..|.+++. -..+
T Consensus 6 ~~ilVtG-aG~-iG~~l~~~L~~~g~~V~~~~r~~~~------------~~~~~~~~~~~~-~~D~~d~~------~~~~ 64 (286)
T 3ius_A 6 GTLLSFG-HGY-TARVLSRALAPQGWRIIGTSRNPDQ------------MEAIRASGAEPL-LWPGEEPS------LDGV 64 (286)
T ss_dssp CEEEEET-CCH-HHHHHHHHHGGGTCEEEEEESCGGG------------HHHHHHTTEEEE-ESSSSCCC------CTTC
T ss_pred CcEEEEC-CcH-HHHHHHHHHHHCCCEEEEEEcChhh------------hhhHhhCCCeEE-Eecccccc------cCCC
Confidence 6899999 433 133466554 335689998876432 233444566554 45888865 2457
Q ss_pred cEEEEcCCCC
Q 041136 99 DVIIFNFPHA 108 (214)
Q Consensus 99 D~IiFNFPH~ 108 (214)
|.||.+-...
T Consensus 65 d~vi~~a~~~ 74 (286)
T 3ius_A 65 THLLISTAPD 74 (286)
T ss_dssp CEEEECCCCB
T ss_pred CEEEECCCcc
Confidence 9999765543
No 299
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=50.89 E-value=11 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=44.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~ 92 (214)
+.....+|+++|-|.+..+ +++.+.. +..+++. |..++ .++.+++. |+.+++| ||++-+-...
T Consensus 123 ~~~~~~hviI~G~g~~g~~--la~~L~~~~~~vvvi--d~~~~----------~~~~~~~~~~~~~i~G-d~~~~~~L~~ 187 (565)
T 4gx0_A 123 PDDTRGHILIFGIDPITRT--LIRKLESRNHLFVVV--TDNYD----------QALHLEEQEGFKVVYG-SPTDAHVLAG 187 (565)
T ss_dssp CTTCCSCEEEESCCHHHHH--HHHHTTTTTCCEEEE--ESCHH----------HHHHHHHSCSSEEEES-CTTCHHHHHH
T ss_pred ccccCCeEEEECCChHHHH--HHHHHHHCCCCEEEE--ECCHH----------HHHHHHHhcCCeEEEe-CCCCHHHHHh
Confidence 3566788999999987666 8887642 3345444 43322 34555665 8887776 7776433212
Q ss_pred CCCCcccEEEE
Q 041136 93 LSQMKFDVIIF 103 (214)
Q Consensus 93 ~~~~~FD~IiF 103 (214)
..-...|.||-
T Consensus 188 a~i~~a~~vi~ 198 (565)
T 4gx0_A 188 LRVAAARSIIA 198 (565)
T ss_dssp TTGGGCSEEEE
T ss_pred cCcccCCEEEE
Confidence 23345677765
No 300
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=50.63 E-value=57 Score=26.70 Aligned_cols=123 Identities=12% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
.++++|+.|=+.. .-+++|+.+. .+.+|+++...+.+.+ ++..++|+..|. .+.+.+|.++.+....+ .
T Consensus 30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERA-------QAVVSEIEQAGGRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHH-------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHH-------HHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 4678999994321 2333554431 2467888876664432 234556666554 45677888875532111 1
Q ss_pred -----CCcccEEEEcCCCCCCCCCCCcccHH----HHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 -----QMKFDVIIFNFPHAGHSPPLSEQDTN----LIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G~~~~~~~~~~~----~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
-.+.|.+|.|==-.. .....+...+ .+..|-.=.....+.+.+.++++|.|...
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWH-SAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 136898887742211 1112222111 12223222233455666777778887444
No 301
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=50.08 E-value=43 Score=27.24 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=43.5
Q ss_pred CCCeEEEEec-C----chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCC
Q 041136 18 NNQRILLVGE-G----DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRH 90 (214)
Q Consensus 18 ~~~~ILlVGe-G----nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~ 90 (214)
+++++|+-|= | .+..++.|+++ +.+|+.+..+.+. .++..+.+++.+ -...+.+|+++-+..
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~---Ga~Vvi~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 73 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL---GAKLVFTYRKERS--------RKELEKLLEQLNQPEAHLYQIDVQSDEEV 73 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT---TCEEEEEESSGGG--------HHHHHHHHGGGTCSSCEEEECCTTCHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEECCHHH--------HHHHHHHHHhcCCCcEEEEEccCCCHHHH
Confidence 4678899884 2 24444444442 4689998876432 122233444433 245567888875432
Q ss_pred CCC------CCCcccEEEEcCC
Q 041136 91 PTL------SQMKFDVIIFNFP 106 (214)
Q Consensus 91 ~~~------~~~~FD~IiFNFP 106 (214)
..+ .-.+.|.+|-|--
T Consensus 74 ~~~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 74 INGFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEeccc
Confidence 111 1246899998854
No 302
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=49.92 E-value=6.8 Score=34.06 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=23.8
Q ss_pred HHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 122 IKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 122 i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
|.-|++| |..++..|..+|++||++ .||
T Consensus 203 I~VN~EL~~L~~~L~~a~~~L~~gGrl~vis 233 (285)
T 1wg8_A 203 IYVNDELNALKEFLEQAAEVLAPGGRLVVIA 233 (285)
T ss_dssp HHHTTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 4557777 899999999999999998 555
No 303
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=48.66 E-value=14 Score=33.55 Aligned_cols=90 Identities=14% Similarity=0.296 Sum_probs=57.9
Q ss_pred CCCCCeEEEEe-cCchhHHHHHHHHhCCCCcEEEeecCChHHHHh----cCccHHHHHHHHHhCCC-EEEEccccccCCC
Q 041136 16 YTNNQRILLVG-EGDFSFSDCLARAFGSATNMVASSLDSERTLKT----KHWTSQAHLQSLWSRGC-LVLHGVNVHTMDR 89 (214)
Q Consensus 16 ~~~~~~ILlVG-eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~----kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~ 89 (214)
....+++|++| -..+.-|.+++-+++.+.++++.+++.+..-.+ ...+.....+.+++.|. .+.++.|+++-+.
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 34578999999 888988877766654457899999987543211 01123444556666554 6779999987332
Q ss_pred CCC------CCCCcccEEEEcC
Q 041136 90 HPT------LSQMKFDVIIFNF 105 (214)
Q Consensus 90 ~~~------~~~~~FD~IiFNF 105 (214)
... -.-.+.|.+|.|=
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~ 148 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSL 148 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEec
Confidence 100 0235799999883
No 304
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=48.37 E-value=50 Score=27.82 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=45.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.++++||-||=|.=.++..|++.... ..+++|.-+| +++.+ .+.++. ..++.+ +.-|+.++.-...+.
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid--~~~l~---~a~~~~----~~~v~~-i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELD--RDLIG---RLEQRF----GELLEL-HAGDALTFDFGSIAR 109 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECC--HHHHH---HHHHHH----GGGEEE-EESCGGGCCGGGGSC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECC--HHHHH---HHHHhc----CCCcEE-EECChhcCChhHhcc
Confidence 457889999995444455558877532 1236665554 33331 244441 223444 455888765211111
Q ss_pred --CCcccEEEEcCCC
Q 041136 95 --QMKFDVIIFNFPH 107 (214)
Q Consensus 95 --~~~FD~IiFNFPH 107 (214)
....+.||-|.|-
T Consensus 110 ~~~~~~~~vv~NlPY 124 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPY 124 (279)
T ss_dssp SSSSCCEEEEEECCH
T ss_pred cccCCceEEEEccCc
Confidence 0134689999996
No 305
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=47.63 E-value=58 Score=26.58 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|.. -+++++.+. .+.+|++++.+..+.+ ++..+.++..|. ...+.+|.++......+
T Consensus 28 ~~k~vlVTGas~gI--G~~ia~~l~~~G~~V~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 98 (283)
T 1g0o_A 28 EGKVALVTGAGRGI--GREMAMELGRRGCKVIVNYANSTESA-------EEVVAAIKKNGSDAACVKANVGVVEDIVRMF 98 (283)
T ss_dssp TTCEEEETTTTSHH--HHHHHHHHHHTTCEEEEEESSCHHHH-------HHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEeCCchHHH-------HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHH
Confidence 357888888 4433 333554431 2468998888765432 122455555554 44567788764431111
Q ss_pred C-----CCcccEEEEcC
Q 041136 94 S-----QMKFDVIIFNF 105 (214)
Q Consensus 94 ~-----~~~FD~IiFNF 105 (214)
. -...|.||.|=
T Consensus 99 ~~~~~~~g~iD~lv~~A 115 (283)
T 1g0o_A 99 EEAVKIFGKLDIVCSNS 115 (283)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 0 13689888773
No 306
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=47.53 E-value=16 Score=32.08 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--C
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--P 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~ 91 (214)
....+++||++|-|..- ++..||+.+| ...+++|....+ .++.++++|+...++-+..++.+. .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~i~~ 276 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEV------------RRNLAKELGADHVIDPTKENFVEAVLD 276 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHH------------HHHHHHHHTCSEEECTTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHH------------HHHHHHHcCCCEEEcCCCCCHHHHHHH
Confidence 45678999999988764 4555677775 337888754322 244556678765554332221110 0
Q ss_pred CCCCCcccEEEE
Q 041136 92 TLSQMKFDVIIF 103 (214)
Q Consensus 92 ~~~~~~FD~IiF 103 (214)
...+..+|.||=
T Consensus 277 ~t~g~g~D~vid 288 (404)
T 3ip1_A 277 YTNGLGAKLFLE 288 (404)
T ss_dssp HTTTCCCSEEEE
T ss_pred HhCCCCCCEEEE
Confidence 012456898763
No 307
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=47.27 E-value=50 Score=26.61 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|.. -++||+.+ ..+.+|++++.+.+. .++..+.++..|. ...+.+|.++.+....+
T Consensus 28 ~~k~vlITGas~gI--G~~la~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 97 (262)
T 3rkr_A 28 SGQVAVVTGASRGI--GAAIARKLGSLGARVVLTARDVEK--------LRAVEREIVAAGGEAESHACDLSHSDAIAAFA 97 (262)
T ss_dssp TTCEEEESSTTSHH--HHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCChH--HHHHHHHHHHCCCEEEEEECCHHH--------HHHHHHHHHHhCCceeEEEecCCCHHHHHHHH
Confidence 467899999 4433 33455543 134689998876432 2334556666555 45567888875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.||.|=
T Consensus 98 ~~~~~~~g~id~lv~~A 114 (262)
T 3rkr_A 98 TGVLAAHGRCDVLVNNA 114 (262)
T ss_dssp HHHHHHHSCCSEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 113689988774
No 308
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=46.66 E-value=64 Score=23.40 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC
Q 041136 65 QAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG 144 (214)
Q Consensus 65 ~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G 144 (214)
.++++.|++.|++.+.++-...-... .....+..+.+..|..+.. + .+.+..|+.-....+..+|
T Consensus 25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~--~~~~~~~~~~~~~~d~~~~------~-------~~~~~~~~~~i~~~~~~~~ 89 (150)
T 4erc_A 25 PAHYQFLLDLGVRHLVSLTERGPPHS--DSCPGLTLHRLRIPDFCPP------A-------PDQIDRFVQIVDEANARGE 89 (150)
T ss_dssp HHHHHHHHHTTEEEEEECSSSCCTTG--GGCTTSEEEECCCCTTSCC------C-------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCcc--cccCCceEEEEecCCCCCC------C-------HHHHHHHHHHHHHHHHCCC
Confidence 56789999999988888765432211 1122345554444444321 1 1234445544555556777
Q ss_pred EEEEEecCCC
Q 041136 145 EVHVTLRDDH 154 (214)
Q Consensus 145 ~i~VTl~~~~ 154 (214)
.|.|-=..|.
T Consensus 90 ~vlVHC~~G~ 99 (150)
T 4erc_A 90 AVGVHCALGF 99 (150)
T ss_dssp EEEEECSSSS
T ss_pred CEEEECCCCC
Confidence 7766544554
No 309
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=45.88 E-value=60 Score=27.01 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=46.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++.+|+-|=+. =.-+++|+.+. .+.+|+.+..+.+ . .++..++|++.|.. ..+.+|+++-+....+
T Consensus 6 ~gKvalVTGas~-GIG~aiA~~la~~Ga~Vv~~~~~~~-~-------~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 6 KNKVVIVTGAGS-GIGRAIAKKFALNDSIVVAVELLED-R-------LNQIVQELRGMGKEVLGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHH-H-------HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHH-H-------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 467778888221 22333444431 3468888877542 2 34456777777764 4578899876542111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
+-.+.|.+|-|=
T Consensus 77 ~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 77 RTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 124689999873
No 310
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=45.56 E-value=40 Score=28.30 Aligned_cols=121 Identities=15% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCCCCCeEEEEe-cCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--
Q 041136 15 HYTNNQRILLVG-EGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-- 90 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-- 90 (214)
..+.+++||+.| -|..--+ ..+++..| .++++|+.+.+ .++.++++|+...++.+..++.+.
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~------------~~~~~~~~Ga~~~~~~~~~~~~~~~~ 202 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPE------------KAAHAKALGAWETIDYSHEDVAKRVL 202 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHH------------HHHHHHHHTCSEEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHH------------HHHHHHHcCCCEEEeCCCccHHHHHH
Confidence 456789999999 7877554 34567775 48999875432 234445567755544332221110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
....+..+|.||-+ +|.. -+..+..+|+++|++.+.=..+.|...++...+..+..+
T Consensus 203 ~~~~~~g~Dvvid~---~g~~--------------------~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~ 259 (325)
T 3jyn_A 203 ELTDGKKCPVVYDG---VGQD--------------------TWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSV 259 (325)
T ss_dssp HHTTTCCEEEEEES---SCGG--------------------GHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSC
T ss_pred HHhCCCCceEEEEC---CChH--------------------HHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcE
Confidence 00123579977653 3321 123456788999998554222222233444444444334
Q ss_pred EE
Q 041136 171 VL 172 (214)
Q Consensus 171 ~l 172 (214)
.+
T Consensus 260 ~~ 261 (325)
T 3jyn_A 260 YV 261 (325)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 311
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=45.32 E-value=50 Score=26.52 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCeEEEEecCch-hHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCC--CEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEGDF-SFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g--~~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.|=+.+ -.-+++|+.+. .+.+|++++.+... .+.++++ ++.+ -...+.+|.++.+....
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL---------EKSVHELAGTLDRNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG---------HHHHHHHHHTSSSCCCEEEECCCSSSHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH---------HHHHHHHHHhcCCCCceEEeCCCCCHHHHHH
Confidence 3578999995433 23334444431 24678888766321 1112222 2222 35667789887654211
Q ss_pred CC------CCcccEEEEcCCCCCC---CCCCCcccHH----HHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 93 LS------QMKFDVIIFNFPHAGH---SPPLSEQDTN----LIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 93 ~~------~~~FD~IiFNFPH~G~---~~~~~~~~~~----~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
+- -.+.|.+|.|---.+. .....+.+.. .+..|-.-.....+.+...++++|.| .|+
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 11 1368988877433221 0112222211 11222222333455666777778887 444
No 312
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=45.12 E-value=13 Score=30.53 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccC-CCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTM-DRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L-~~~~~ 92 (214)
.+++||+.| -|..=. ++|+.+ ..+.+|++++.+... ..+.+++|++.+ ....+.+|.++. +....
T Consensus 11 ~~k~vlITGas~GIG~--~~a~~L~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~ 80 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGF--EICKQLSSNGIMVVLTCRDVTK--------GHEAVEKLKNSNHENVVFHQLDVTDPIATMSS 80 (311)
T ss_dssp -CCEEEESSCSSHHHH--HHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHTTTCCSEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEecCCchHHH--HHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCCceEEEEccCCCcHHHHHH
Confidence 467899999 344333 344443 124689999987532 233456666554 366778899886 32111
Q ss_pred C----C--CCcccEEEEcC
Q 041136 93 L----S--QMKFDVIIFNF 105 (214)
Q Consensus 93 ~----~--~~~FD~IiFNF 105 (214)
+ . ..+.|.||.|=
T Consensus 81 ~~~~~~~~~g~iD~lv~nA 99 (311)
T 3o26_A 81 LADFIKTHFGKLDILVNNA 99 (311)
T ss_dssp HHHHHHHHHSSCCEEEECC
T ss_pred HHHHHHHhCCCCCEEEECC
Confidence 1 1 13689888774
No 313
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=43.94 E-value=30 Score=29.61 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccc-cCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVH-TMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt-~L~~~~~ 92 (214)
....+++||++|-|..- ++..||+.+| ..|++|+.+.+. ++.++++|+...++.+.. ++.+ .
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~------------~~~~~~lGa~~v~~~~~~~~~~~--~ 239 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRK------------REDAMKMGADHYIATLEEGDWGE--K 239 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTT------------HHHHHHHTCSEEEEGGGTSCHHH--H
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHH------------HHHHHHcCCCEEEcCcCchHHHH--H
Confidence 34678999999987654 3556678776 369998865431 233444576554443322 1111 1
Q ss_pred CCCCcccEEEEcCCC
Q 041136 93 LSQMKFDVIIFNFPH 107 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH 107 (214)
+. ..+|.||=.-+.
T Consensus 240 ~~-~~~D~vid~~g~ 253 (360)
T 1piw_A 240 YF-DTFDLIVVCASS 253 (360)
T ss_dssp SC-SCEEEEEECCSC
T ss_pred hh-cCCCEEEECCCC
Confidence 11 368887755443
No 314
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=43.80 E-value=17 Score=32.87 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCCCeEEEEecCchhHHHHH-HHHhCCCCcEEE--eecCChHHHHhcCccHHHHHHH-HHhCC---CEEEEccccccCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCL-ARAFGSATNMVA--SSLDSERTLKTKHWTSQAHLQS-LWSRG---CLVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~A--Ts~ds~~~l~~kY~~a~~ni~~-L~~~g---~~Vl~~VDAt~L~ 88 (214)
+-.++|+++.||++..++++- ...+| ..+++ |...+.+ | ++.+++ |+..+ +.|+.+.|...|.
T Consensus 309 ~l~gkrv~i~~~~~~~~~l~~~L~elG--~~vv~v~~~~~~~~-----~---~~~~~~ll~~~~~~~~~v~~~~d~~~l~ 378 (458)
T 1mio_B 309 YLQGKKVALLGDPDEIIALSKFIIELG--AIPKYVVTGTPGMK-----F---QKEIDAMLAEAGIEGSKVKVEGDFFDVH 378 (458)
T ss_dssp HHTTCEEEEEECHHHHHHHHHHHHTTT--CEEEEEEESSCCHH-----H---HHHHHHHHHTTTCCSCEEEESCBHHHHH
T ss_pred HcCCCEEEEEcCchHHHHHHHHHHHCC--CEEEEEEeCCCCHH-----H---HHHHHHHHHhcCCCCCEEEECCCHHHHH
Confidence 346899999999987777431 22344 34444 3333322 1 222322 34433 5677777766554
No 315
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=42.15 E-value=31 Score=29.42 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--C
Q 041136 15 HYTNNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--P 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~ 91 (214)
....+++||++|-|..-- +..||++.| ...|++++.+.+ .++.++++|+...++.+..++.+. .
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKH------------CCDIALEYGATDIINYKNGDIVEQILK 229 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHH------------HHHHHHHHTCCEEECGGGSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHH------------HHHHHHHhCCceEEcCCCcCHHHHHHH
Confidence 356789999999886643 445577665 337888754321 245556678876655443322210 0
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+..+|.|+= .+|.. ..+..+..+|+++|++.+.
T Consensus 230 ~t~g~g~D~v~d---~~g~~-------------------~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 230 ATDGKGVDKVVI---AGGDV-------------------HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HTTTCCEEEEEE---CSSCT-------------------THHHHHHHHEEEEEEEEEC
T ss_pred HcCCCCCCEEEE---CCCCh-------------------HHHHHHHHHHhcCCEEEEe
Confidence 012446998864 23431 1134466788999987543
No 316
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=42.06 E-value=49 Score=26.78 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=60.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
.++++|+.|=+.. .-+++++.+. .+.+|++++..+.+. ..+..+.++..|. ...+.+|.++......+ .
T Consensus 7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEG-------AATAVAEIEKLGRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHH-------HHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHH-------HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 4678999994321 2333444431 246788875444332 2334566666554 45567888875532111 0
Q ss_pred -----CCcccEEEEcCCCCCCCCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 -----QMKFDVIIFNFPHAGHSPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 -----~~~FD~IiFNFPH~G~~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
-.+.|.+|.|==.........+... ..+..|-.=.....+.+...+.++|.|...
T Consensus 79 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 79 AAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp HHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1368988877421111111222211 112223222333445555566667777433
No 317
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=41.92 E-value=39 Score=28.35 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=42.9
Q ss_pred CeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh---------CCCEEEEccccccCC
Q 041136 20 QRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS---------RGCLVLHGVNVHTMD 88 (214)
Q Consensus 20 ~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---------~g~~Vl~~VDAt~L~ 88 (214)
.+||=+| -|.+|+. ||.. + .. +|++|..+.+.+ -+.+|++..+. ..+. ++.-|+.++-
T Consensus 90 ~~VLDl~~G~G~dal~--lA~~-g--~~--V~~vE~~~~~~~---l~~~~l~~a~~~~~~~~~l~~~i~-~~~~D~~~~L 158 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFV--LASV-G--CR--VRMLERNPVVAA---LLDDGLARGYADAEIGGWLQERLQ-LIHASSLTAL 158 (258)
T ss_dssp CCEEETTCTTCHHHHH--HHHH-T--CC--EEEEECCHHHHH---HHHHHHHHHHHCTTTHHHHHHHEE-EEESCHHHHS
T ss_pred CEEEEcCCcCCHHHHH--HHHc-C--CE--EEEEECCHHHHH---HHHHHHHHHHhhHhhhhhhhcCEE-EEECCHHHHH
Confidence 7898776 5666555 6664 3 23 667776554431 23444443321 1244 4455777743
Q ss_pred CCCCCCCCcccEEEEcCCCCC
Q 041136 89 RHPTLSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~G 109 (214)
.. +. ..||.|++|.|...
T Consensus 159 ~~--~~-~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 159 TD--IT-PRPQVVYLDPMFPH 176 (258)
T ss_dssp TT--CS-SCCSEEEECCCCCC
T ss_pred Hh--Cc-ccCCEEEEcCCCCC
Confidence 21 22 26999999988754
No 318
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=41.90 E-value=17 Score=32.97 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=47.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH--HhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL--WSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L--~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.+||=+|=|-=.++.+|++. +.. +|+.|..+++.+ .+..|++.+ .-.+ .-+..-|+.+.-. .+..
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~---g~~--V~~VD~s~~~l~---~Ar~N~~~~~~gl~~-i~~i~~Da~~~L~--~~~~ 161 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK---ASQ--GIYIERNDETAV---AARHNIPLLLNEGKD-VNILTGDFKEYLP--LIKT 161 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT---CSE--EEEEESCHHHHH---HHHHHHHHHSCTTCE-EEEEESCGGGSHH--HHHH
T ss_pred CCCEEEEeCCCchHHHHHHHhc---CCE--EEEEECCHHHHH---HHHHhHHHhccCCCc-EEEEECcHHHhhh--hccC
Confidence 4789998874433344456654 234 555565454442 477888876 2212 3345557766311 0123
Q ss_pred CcccEEEEcCCCCCC
Q 041136 96 MKFDVIIFNFPHAGH 110 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~ 110 (214)
.+||.|+.|.|--+.
T Consensus 162 ~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 162 FHPDYIYVDPARRSG 176 (410)
T ss_dssp HCCSEEEECCEEC--
T ss_pred CCceEEEECCCCcCC
Confidence 579999999998864
No 319
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=41.17 E-value=46 Score=27.38 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-..+++||-||=|.=.++..|++. + ...++|.-+|.. +.+ .+.++ ...++ -++.-|+.++.-. .+.
T Consensus 28 ~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~--~~~---~~~~~----~~~~v-~~i~~D~~~~~~~-~~~ 94 (249)
T 3ftd_A 28 NIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDRE--MVE---NLKSI----GDERL-EVINEDASKFPFC-SLG 94 (249)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHH--HHH---HHTTS----CCTTE-EEECSCTTTCCGG-GSC
T ss_pred CCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHH--HHH---HHHhc----cCCCe-EEEEcchhhCChh-Hcc
Confidence 3456889999997765666667765 2 346666655543 221 12222 11233 4455588776421 111
Q ss_pred CCcccEEEEcCCCC
Q 041136 95 QMKFDVIIFNFPHA 108 (214)
Q Consensus 95 ~~~FD~IiFNFPH~ 108 (214)
. .| .||.|.|..
T Consensus 95 ~-~~-~vv~NlPy~ 106 (249)
T 3ftd_A 95 K-EL-KVVGNLPYN 106 (249)
T ss_dssp S-SE-EEEEECCTT
T ss_pred C-Cc-EEEEECchh
Confidence 1 34 899999984
No 320
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=40.22 E-value=1e+02 Score=26.28 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
....+++||++|-|..- ++..||+..| ...|++|..+.+ +++.++++|+...++.+. .++.+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKD------------KFAKAKEVGATECVNPQDYKKPIQEVL 254 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG------------GHHHHHHTTCSEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHH------------HHHHHHHhCCceEecccccchhHHHHH
Confidence 45678999999977653 3555677775 236888865432 234556678765544331 111110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
..+....+|.||=. +|.. ..+..+.++|+++ |++.+.
T Consensus 255 ~~~~~~g~D~vid~---~g~~-------------------~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 255 TEMSNGGVDFSFEV---IGRL-------------------DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHTTSCBSEEEEC---SCCH-------------------HHHHHHHHHBCTTTCEEEEC
T ss_pred HHHhCCCCcEEEEC---CCCH-------------------HHHHHHHHHhhcCCcEEEEe
Confidence 00112368988743 3320 1134567788999 997543
No 321
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=39.76 E-value=46 Score=25.48 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=36.1
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecCC---hHHHHhcCccHHHHHHHHHh-CCCEEEEcc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLDS---ERTLKTKHWTSQAHLQSLWS-RGCLVLHGV 82 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ds---~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~V 82 (214)
.|++++=| +||.+|+.. +|...++.|-++.. .+++.++ ..+-++.+.. .|+.|+.++
T Consensus 3 giii~sHg--~~A~gl~~~~~~i~G~~~~i~av~~~~~~~~~~~~~~---i~~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 3 GIVIATHG--ALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQ---IKTAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp EEEEEEET--THHHHHHHHHHHHHSCCCSEEEEEECTTCCHHHHHHH---HHHHHHHHCSSSCEEEEESS
T ss_pred EEEEEECc--HHHHHHHHHHHHHcCCCCCEEEEEecCCCCHHHHHHH---HHHHHHhcCCCCCEEEEEeC
Confidence 58999999 788888654 45556888887753 3445543 3445555543 456666554
No 322
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=39.75 E-value=72 Score=24.29 Aligned_cols=56 Identities=14% Similarity=0.333 Sum_probs=35.6
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecC---ChHHHHhcCccHHHHHHHH-H-hCCCEEEEc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLD---SERTLKTKHWTSQAHLQSL-W-SRGCLVLHG 81 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~d---s~~~l~~kY~~a~~ni~~L-~-~~g~~Vl~~ 81 (214)
.|++++=|+ ||.+|+.. +|...++.|-++. +.+++.++ ..+-++.+ . ..|+.|+-+
T Consensus 5 giii~sHG~--~A~gl~~~~~~i~G~~~~v~av~~~~~~~~~~~~~~---i~~~i~~~~~~~~gvliLtD 69 (144)
T 3lfh_A 5 FVLIITHGD--FGKGLLSGAEVIIGKQENVHTVGLNLGDNIEVVRKE---VEKIIKEKLQEDKEIIIVVD 69 (144)
T ss_dssp EEEEEEETT--HHHHHHHHHHHHHCCCSSEEEEEECTTCCHHHHHHH---HHHHHHHHHTTTCEEEEEES
T ss_pred eEEEEeCcH--HHHHHHHHHHHHcCCCCcEEEEEccCCCCHHHHHHH---HHHHHHHhhCCCCcEEEEEe
Confidence 589999997 78888664 5655688888875 33555543 44456666 3 234444443
No 323
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=39.55 E-value=13 Score=32.01 Aligned_cols=28 Identities=32% Similarity=0.697 Sum_probs=24.3
Q ss_pred HHHhHHH--HHHHHHHHHhccCCCCEE-EEE
Q 041136 122 IKRHKNL--LEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 122 i~~n~~L--L~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
|.-|.+| |..++..|..+|++||++ .||
T Consensus 215 i~vn~el~~l~~~l~~~~~~l~~ggr~~vis 245 (301)
T 1m6y_A 215 IYVNRELENLKEFLKKAEDLLNPGGRIVVIS 245 (301)
T ss_dssp HHHHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHhcCHHHHHHHHHHHHHhhCCCCEEEEEe
Confidence 5668877 999999999999999998 555
No 324
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=39.29 E-value=70 Score=26.46 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCeEEEEecCch-hHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGDF-SFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnF-SFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|=+.+ -.-+++|+.+. .+.+|+++..+.. . .+.++.+. ..+....+.+|.++.+....+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~--~-------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 100 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA--L-------KKRVEPLAEELGAFVAGHCDVADAASIDAVF 100 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH--H-------HHHHHHHHHHHTCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH--H-------HHHHHHHHHhcCCceEEECCCCCHHHHHHHH
Confidence 4678999995432 13333444431 2467888877632 1 11222222 235567788899876542111
Q ss_pred -----CCCcccEEEEcCCCCCC---CCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 94 -----SQMKFDVIIFNFPHAGH---SPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 94 -----~~~~FD~IiFNFPH~G~---~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
.-.+.|.+|.|==-... .....+... ..+..|-.-.....+.+...+..+|.| .|+
T Consensus 101 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 101 ETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 12468999887322110 011112111 112223333334455566667778887 444
No 325
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=38.70 E-value=36 Score=30.46 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++|++||=|----|. |+.+. .+..| |++|..+... ....+.|++.|+.+..|-++.++- ..
T Consensus 8 ~~k~v~viG~G~sG~s~--A~~l~~~G~~V--~~~D~~~~~~------~~~~~~L~~~gi~~~~g~~~~~~~------~~ 71 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAA--ARLLAKLGAIV--TVNDGKPFDE------NPTAQSLLEEGIKVVCGSHPLELL------DE 71 (451)
T ss_dssp TTCEEEEECCTTTHHHH--HHHHHHTTCEE--EEEESSCGGG------CHHHHHHHHTTCEEEESCCCGGGG------GS
T ss_pred CCCEEEEEeeCHHHHHH--HHHHHhCCCEE--EEEeCCcccC------ChHHHHHHhCCCEEEECCChHHhh------cC
Confidence 46899999987543332 33221 12344 4456532100 123568888999999987755431 12
Q ss_pred cccEEEEc
Q 041136 97 KFDVIIFN 104 (214)
Q Consensus 97 ~FD~IiFN 104 (214)
.+|.||..
T Consensus 72 ~~d~vv~s 79 (451)
T 3lk7_A 72 DFCYMIKN 79 (451)
T ss_dssp CEEEEEEC
T ss_pred CCCEEEEC
Confidence 28999875
No 326
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=38.45 E-value=47 Score=28.16 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CC-CC
Q 041136 18 NNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PT-LS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~-~~ 94 (214)
.+++||++|-|..-- +..||+..| ...|+||+.+.+ .++.++++|+...++.+..++.+. .. ..
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~~~~~------------~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASG-AYPVIVSEPSDF------------RRELAKKVGADYVINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEECSCHH------------HHHHHHHHTCSEEECTTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHH------------HHHHHHHhCCCEEECCCCcCHHHHHHHHcC
Confidence 688999999886543 444567665 237888876432 234455667755544332221110 00 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
+..+|.||-+- |.. ..+..+.++|+++|++.+
T Consensus 234 g~g~D~vid~~---g~~-------------------~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 234 GNGVDVFLEFS---GAP-------------------KALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp TSCEEEEEECS---CCH-------------------HHHHHHHHHEEEEEEEEE
T ss_pred CCCCCEEEECC---CCH-------------------HHHHHHHHHHhcCCEEEE
Confidence 34689887542 320 123456677889998744
No 327
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=38.30 E-value=28 Score=28.57 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=43.1
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
+++||+.| -|.. ..+|++.+. .+.+|+++..+. +. .++..+.|+..|. ...+.+|.++.+....+
T Consensus 44 ~k~vlITGasggI--G~~la~~L~~~G~~V~~~~r~~-~~-------~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 113 (285)
T 2c07_A 44 NKVALVTGAGRGI--GREIAKMLAKSVSHVICISRTQ-KS-------CDSVVDEIKSFGYESSGYAGDVSKKEEISEVIN 113 (285)
T ss_dssp SCEEEEESTTSHH--HHHHHHHHTTTSSEEEEEESSH-HH-------HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCcHH--HHHHHHHHHHcCCEEEEEcCCH-HH-------HHHHHHHHHhcCCceeEEECCCCCHHHHHHHHH
Confidence 57899998 4443 334666653 346788865543 22 2233455665554 44567888875431111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
.....|.||.|=
T Consensus 114 ~~~~~~~~id~li~~A 129 (285)
T 2c07_A 114 KILTEHKNVDILVNNA 129 (285)
T ss_dssp HHHHHCSCCCEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 113689888773
No 328
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=38.27 E-value=70 Score=26.47 Aligned_cols=122 Identities=9% Similarity=0.147 Sum_probs=59.6
Q ss_pred CCCeEEEEecCc-hhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHH-HHhCCCEEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGEGD-FSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQS-LWSRGCLVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~~g~~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|=+. =-..+++|+.+ ..+.+|++++.+.... +.++. .+..|....+.+|.++.+....+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~---------~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 99 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFK---------KRVDPLAESLGVKLTVPCDVSDAESVDNMF 99 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH---------HHHHHHHHHHTCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHH---------HHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Confidence 467899999541 11233344443 1246788888764211 11222 22335557788898875542111
Q ss_pred C-----CCcccEEEEcCCCCCC---CCCCCcccH----HHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 S-----QMKFDVIIFNFPHAGH---SPPLSEQDT----NLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 ~-----~~~FD~IiFNFPH~G~---~~~~~~~~~----~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
. -.+.|.+|-|==-... .....+... ..+..|-.-.....+.+...+..+|.|..
T Consensus 100 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~ 166 (296)
T 3k31_A 100 KVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILT 166 (296)
T ss_dssp HHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred HHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 1 1368998877422210 011112111 11222333334445556666777888743
No 329
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=38.15 E-value=52 Score=27.98 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=42.8
Q ss_pred CCeEEEEecCchhHH-HH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFS-DC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS-~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++|++||=|.=.-| +| ++...| ..| |..|..+. +. ..+.|++.|+.|..|-|+..+.. .
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G--~~V--~~~D~~~~-----~~---~~~~L~~~gi~v~~g~~~~~l~~------~ 65 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAG--FEV--SGCDAKMY-----PP---MSTQLEALGIDVYEGFDAAQLDE------F 65 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTT--CEE--EEEESSCC-----TT---HHHHHHHTTCEEEESCCGGGGGS------C
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCC--CEE--EEEcCCCC-----cH---HHHHHHhCCCEEECCCCHHHcCC------C
Confidence 468999999887664 33 333443 344 45565321 21 35678888999998877665421 2
Q ss_pred cccEEEEc
Q 041136 97 KFDVIIFN 104 (214)
Q Consensus 97 ~FD~IiFN 104 (214)
.+|.||..
T Consensus 66 ~~d~vV~S 73 (326)
T 3eag_A 66 KADVYVIG 73 (326)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 37888875
No 330
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=37.97 E-value=67 Score=27.35 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEec-Cchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccc---cccCCC
Q 041136 15 HYTNNQRILLVGE-GDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVN---VHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVGe-GnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VD---At~L~~ 89 (214)
....+++||++|- |..- ++..||+.+| ..+++|+-.++ +..+.++.++++|+...++-+ ...+.+
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~--------~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~ 233 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRP--------DIQKLSDRLKSLGAEHVITEEELRRPEMKN 233 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCS--------CHHHHHHHHHHTTCSEEEEHHHHHSGGGGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCcc--------chHHHHHHHHhcCCcEEEecCcchHHHHHH
Confidence 4567899999996 7664 5667788886 35666653221 122234566778886555432 122222
Q ss_pred CCCCCC-CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 90 HPTLSQ-MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 90 ~~~~~~-~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ... ..+|.||=. +|. ..+ ..+..+|+++|++.+.
T Consensus 234 ~--~~~~~~~Dvvid~---~g~---------------~~~-----~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 234 F--FKDMPQPRLALNC---VGG---------------KSS-----TELLRQLARGGTMVTY 269 (357)
T ss_dssp T--TSSSCCCSEEEES---SCH---------------HHH-----HHHHTTSCTTCEEEEC
T ss_pred H--HhCCCCceEEEEC---CCc---------------HHH-----HHHHHhhCCCCEEEEE
Confidence 1 111 148877532 342 111 1356788999997553
No 331
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=37.92 E-value=26 Score=26.18 Aligned_cols=57 Identities=25% Similarity=0.270 Sum_probs=34.5
Q ss_pred eEEEEecCchhHHHHHHHH----hCCCCcEEEeecCC---hHHHHhcCccHHHHHHHHHh-CCCEEEEcc
Q 041136 21 RILLVGEGDFSFSDCLARA----FGSATNMVASSLDS---ERTLKTKHWTSQAHLQSLWS-RGCLVLHGV 82 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ds---~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~V 82 (214)
.|++++=|+ ||.+|+.. +|...++.|-++.. .+++.++ ..+-++.+.. .|+.|+.++
T Consensus 3 ~iii~sHG~--~A~gl~~~~~~i~G~~~~v~ai~~~~~~~~~~~~~~---i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 3 AIVIGTHGW--AAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEK---YNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp EEEEECSBT--HHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHH---HHHHHTTSCCTTCEEEEESS
T ss_pred eEEEEeChH--HHHHHHHHHHHHcCCcCCEEEEEeeCCCCHHHHHHH---HHHHHHhcCCCCCEEEEEEC
Confidence 589999996 78888654 46557898888753 3445433 2333444432 355555443
No 332
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=37.62 E-value=91 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCC-CEEEEEecC
Q 041136 93 LSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEG-GEVHVTLRD 152 (214)
Q Consensus 93 ~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~-G~i~VTl~~ 152 (214)
+...+||.|+.+. |++|.. +.+ .-+.+ | ++-|.++|++| |.+.+-+.+
T Consensus 136 l~~~~~DlVlsD~apnsG~~----~~D-----~~rs~~L---L~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 136 LEPVKCDTLLCDIGESSSSS----VTE-----GERTVRV---LDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SCCCCCSEEEECCCCCCSCH----HHH-----HHHHHHH---HHHHHHHHTTCCSEEEEEESC
T ss_pred cCCCCccEEEecCccCcCch----HHH-----HHHHHHH---HHHHHHHhCCCCCeEEEEecC
Confidence 4567899999987 774431 111 11111 2 77799999999 999887776
No 333
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=35.71 E-value=46 Score=28.70 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds 53 (214)
..+.+++||++|-|..- ++..||+..| ..|++|+...
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~ 228 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSE 228 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 35678999999987643 3555677775 3688887543
No 334
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=35.12 E-value=18 Score=31.91 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCeEEEEecCc--------hhHHHHHHHH---hCCCCcEE-EeecCChHHH----HhcCccHHH-HHHHHHhCCCEEEEc
Q 041136 19 NQRILLVGEGD--------FSFSDCLARA---FGSATNMV-ASSLDSERTL----KTKHWTSQA-HLQSLWSRGCLVLHG 81 (214)
Q Consensus 19 ~~~ILlVGeGn--------FSFS~sLa~~---~~~~~~l~-ATs~ds~~~l----~~kY~~a~~-ni~~L~~~g~~Vl~~ 81 (214)
..++++||-|+ +-++..|+.. .+...++- .|-++..+.+ ...+++... -.+.|++.|+.++.+
T Consensus 149 ~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~ 228 (437)
T 3sx6_A 149 EPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTN 228 (437)
T ss_dssp SCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECS
T ss_pred CCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcC
Confidence 34567888765 5566556543 33211111 2333332222 122233333 347788899999988
Q ss_pred cccccCCCCCC-------------CCCCcccEEEEcCCCCCC
Q 041136 82 VNVHTMDRHPT-------------LSQMKFDVIIFNFPHAGH 110 (214)
Q Consensus 82 VDAt~L~~~~~-------------~~~~~FD~IiFNFPH~G~ 110 (214)
..++.+..... -....+|.|++--|..|.
T Consensus 229 ~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~ 270 (437)
T 3sx6_A 229 CKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGV 270 (437)
T ss_dssp EEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECC
T ss_pred CEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCc
Confidence 76665543210 112478999997776664
No 335
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=34.97 E-value=1.1e+02 Score=26.30 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
.+|||++|=|... ..+++.+....+|+....+. ++++.++.. +. -..+|+++......+ -...
T Consensus 16 ~mkilvlGaG~vG--~~~~~~L~~~~~v~~~~~~~------------~~~~~~~~~-~~-~~~~d~~d~~~l~~~-~~~~ 78 (365)
T 3abi_A 16 HMKVLILGAGNIG--RAIAWDLKDEFDVYIGDVNN------------ENLEKVKEF-AT-PLKVDASNFDKLVEV-MKEF 78 (365)
T ss_dssp CCEEEEECCSHHH--HHHHHHHTTTSEEEEEESCH------------HHHHHHTTT-SE-EEECCTTCHHHHHHH-HTTC
T ss_pred ccEEEEECCCHHH--HHHHHHHhcCCCeEEEEcCH------------HHHHHHhcc-CC-cEEEecCCHHHHHHH-HhCC
Confidence 4689999998764 45677765555666554432 223444432 22 245777764431111 1347
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
|.||-==|-. .|..++..-.++ |.-.|++.... -..+.+.+.|+++|..+.-..
T Consensus 79 DvVi~~~p~~---------------~~~~v~~~~~~~--------g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~ 132 (365)
T 3abi_A 79 ELVIGALPGF---------------LGFKSIKAAIKS--------KVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDA 132 (365)
T ss_dssp SEEEECCCGG---------------GHHHHHHHHHHH--------TCEEEECCCCS-SCGGGGHHHHHHTTCEEECCC
T ss_pred CEEEEecCCc---------------ccchHHHHHHhc--------CcceEeeeccc-hhhhhhhhhhccCCceeeecC
Confidence 9888644321 233444333322 34455655433 356778888998887766433
No 336
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}
Probab=34.96 E-value=87 Score=24.76 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=39.6
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC----CC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT----LS 94 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~----~~ 94 (214)
++++|+.|=+.+ .-++||+.+..+..|++++.+.+. ++.+.+......+.+|.++...... +.
T Consensus 5 ~k~vlITGas~g-IG~~~a~~l~~g~~v~~~~r~~~~------------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (245)
T 3e9n_A 5 KKIAVVTGATGG-MGIEIVKDLSRDHIVYALGRNPEH------------LAALAEIEGVEPIESDIVKEVLEEGGVDKLK 71 (245)
T ss_dssp -CEEEEESTTSH-HHHHHHHHHTTTSEEEEEESCHHH------------HHHHHTSTTEEEEECCHHHHHHTSSSCGGGT
T ss_pred CCEEEEEcCCCH-HHHHHHHHHhCCCeEEEEeCCHHH------------HHHHHhhcCCcceecccchHHHHHHHHHHHH
Confidence 578999993322 344566666555678888765422 1222222334556667665422111 11
Q ss_pred -CCcccEEEEcC
Q 041136 95 -QMKFDVIIFNF 105 (214)
Q Consensus 95 -~~~FD~IiFNF 105 (214)
-.+.|.+|.|=
T Consensus 72 ~~~~id~lv~~A 83 (245)
T 3e9n_A 72 NLDHVDTLVHAA 83 (245)
T ss_dssp TCSCCSEEEECC
T ss_pred hcCCCCEEEECC
Confidence 24689988774
No 337
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=34.76 E-value=50 Score=28.42 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
..+.+++||++|-|..-- +..||+..| ...|+++..+.+ .++.++++|+...++..- .++.+.
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~~~i 256 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSK------------KYETAKKFGVNEFVNPKDHDKPIQEVI 256 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTT------------HHHHHHTTTCCEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHH------------HHHHHHHcCCcEEEccccCchhHHHHH
Confidence 456789999999887643 555677776 337888865442 244566788866554431 111110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
..+....+|.||=. +|.. ..+..+..+|+++ |++.+.
T Consensus 257 ~~~~~gg~D~vid~---~g~~-------------------~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 257 VDLTDGGVDYSFEC---IGNV-------------------SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHTTSCBSEEEEC---SCCH-------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcCCCCCEEEEC---CCCH-------------------HHHHHHHHHhhccCCEEEEE
Confidence 00122378988643 3420 1244577889996 987554
No 338
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=34.27 E-value=23 Score=28.34 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=44.4
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~~ 94 (214)
.++++|+.| -|.. -.+||+.+. .+.+|++++.+.+. ..+..++++..+. ...+.+|.++......+-
T Consensus 8 ~~k~vlITGas~gi--G~~~a~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (253)
T 3qiv_A 8 ENKVGIVTGSGGGI--GQAYAEALAREGAAVVVADINAEA--------AEAVAKQIVADGGTAISVAVDVSDPESAKAMA 77 (253)
T ss_dssp TTCEEEEETTTSHH--HHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCChH--HHHHHHHHHHCCCEEEEEcCCHHH--------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 467899999 4433 333554431 24688888775432 2233455665554 445678888755321110
Q ss_pred ------CCcccEEEEcC
Q 041136 95 ------QMKFDVIIFNF 105 (214)
Q Consensus 95 ------~~~FD~IiFNF 105 (214)
....|.||.|=
T Consensus 78 ~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 78 DRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 13689988874
No 339
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=33.52 E-value=60 Score=27.12 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCCCeEEEEe-cCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCC
Q 041136 15 HYTNNQRILLVG-EGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~ 91 (214)
..+.+++||+.| -|..-- +..||+..| ..+++|+ +.+. ++.++++|+...++.+..+ +.+.
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~--~~~~-----------~~~~~~lGa~~~i~~~~~~~~~~~- 212 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA--SKRN-----------HAFLKALGAEQCINYHEEDFLLAI- 212 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE--CHHH-----------HHHHHHHTCSEEEETTTSCHHHHC-
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe--ccch-----------HHHHHHcCCCEEEeCCCcchhhhh-
Confidence 456789999997 888754 455677775 4788886 3221 3445667886554433322 2221
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ..+|.|+=. +|.. . +..+-++|+++|++.+.
T Consensus 213 -~--~g~D~v~d~---~g~~-------------------~-~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 213 -S--TPVDAVIDL---VGGD-------------------V-GIQSIDCLKETGCIVSV 244 (321)
T ss_dssp -C--SCEEEEEES---SCHH-------------------H-HHHHGGGEEEEEEEEEC
T ss_pred -c--cCCCEEEEC---CCcH-------------------H-HHHHHHhccCCCEEEEe
Confidence 1 458876542 3420 0 13466788999988654
No 340
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=33.44 E-value=95 Score=26.48 Aligned_cols=100 Identities=14% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
....+++||++|-|..- ++..||+.+| ...|++|..+.+ .++.++++|+...++.+. .++.+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKD------------KFPKAIELGATECLNPKDYDKPIYEVI 254 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGG------------GHHHHHHTTCSEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHH------------HHHHHHHcCCcEEEecccccchHHHHH
Confidence 45678999999988664 4566788886 336888865432 234556678865544331 111110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
..+....+|.||=. +|.. ..+..+.++|+++ |++.+.
T Consensus 255 ~~~t~gg~Dvvid~---~g~~-------------------~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 255 CEKTNGGVDYAVEC---AGRI-------------------ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHTTSCBSEEEEC---SCCH-------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEEC---CCCH-------------------HHHHHHHHHHhcCCCEEEEE
Confidence 00112368988742 3320 1234577889999 997543
No 341
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=33.35 E-value=1.1e+02 Score=29.71 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCCCCCeEEEEe-cCchhHHHHHHHHhC--CC-CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCC
Q 041136 15 HYTNNQRILLVG-EGDFSFSDCLARAFG--SA-TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSFS~sLa~~~~--~~-~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~ 89 (214)
++..++.+|+.| -|.+-.+ +|+.+- .+ .+|+.++...... +.+++.+++|+..|+.| .+.+|+++.+.
T Consensus 526 ~~~~~~~~lItGg~~GlG~a--iA~~la~~~Ga~~vvl~~R~~~~~-----~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~ 598 (795)
T 3slk_A 526 VWDAAGTVLVTGGTGALGAE--VARHLVIERGVRNLVLVSRRGPAA-----SGAAELVAQLTAYGAEVSLQACDVADRET 598 (795)
T ss_dssp CCCTTSEEEEETTTSHHHHH--HHHHHHHTSSCCEEEEEESSGGGS-----TTHHHHHHHHHHTTCEEEEEECCTTCHHH
T ss_pred ccccccceeeccCCCCcHHH--HHHHHHHHcCCcEEEEeccCccch-----HHHHHHHHHHHhcCCcEEEEEeecCCHHH
Confidence 467889999998 5554443 555432 23 4689888874321 34667788999989865 46789887443
Q ss_pred CC-----CCCCCcccEEEEc
Q 041136 90 HP-----TLSQMKFDVIIFN 104 (214)
Q Consensus 90 ~~-----~~~~~~FD~IiFN 104 (214)
.. .....+.|.||-|
T Consensus 599 v~~~~~~~~~~~~id~lVnn 618 (795)
T 3slk_A 599 LAKVLASIPDEHPLTAVVHA 618 (795)
T ss_dssp HHHHHHTSCTTSCEEEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEC
Confidence 10 0112268888766
No 342
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=33.31 E-value=21 Score=28.63 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=46.3
Q ss_pred ccCCCCCCeEEEEec---CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccC
Q 041136 13 ISHYTNNQRILLVGE---GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTM 87 (214)
Q Consensus 13 ~~~~~~~~~ILlVGe---GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L 87 (214)
..+...+++||+.|= |..-.+ +|+.+. .+.+|++++.+.. ..+.++++ +..+....+.+|.++.
T Consensus 8 ~~~~~~~k~vlITGa~~~~giG~~--ia~~l~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~~~~~~Dv~~~ 76 (271)
T 3ek2_A 8 HMGFLDGKRILLTGLLSNRSIAYG--IAKACKREGAELAFTYVGDR---------FKDRITEFAAEFGSELVFPCDVADD 76 (271)
T ss_dssp -CCTTTTCEEEECCCCSTTSHHHH--HHHHHHHTTCEEEEEESSGG---------GHHHHHHHHHHTTCCCEEECCTTCH
T ss_pred CccccCCCEEEEeCCCCCCcHHHH--HHHHHHHcCCCEEEEecchh---------hHHHHHHHHHHcCCcEEEECCCCCH
Confidence 445677889999993 444433 444431 2458888887632 11223333 2345556778898875
Q ss_pred CCCCCC------CCCcccEEEEcC
Q 041136 88 DRHPTL------SQMKFDVIIFNF 105 (214)
Q Consensus 88 ~~~~~~------~~~~FD~IiFNF 105 (214)
.....+ ...+.|.+|.|=
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 77 AQIDALFASLKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHHHHHHHHHHCSCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECC
Confidence 542111 124689888774
No 343
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=32.92 E-value=94 Score=26.78 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEecCch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE
Q 041136 15 HYTNNQRILLVGEGDF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV 78 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V 78 (214)
..+.+++||++|-|.. .++..||+.+| ...|+++..+. +.++.++++|+.+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~------------~~~~~a~~lGa~~ 233 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNP------------ARLAHAKAQGFEI 233 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCH------------HHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCH------------HHHHHHHHcCCcE
Confidence 3567899999998776 35667788876 33688875432 2355667788863
No 344
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2
Probab=32.82 E-value=51 Score=26.29 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=43.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC-CC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT-LS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~-~~ 94 (214)
.+++||+.|=+.+ .-.+|++.+. .+.+|++++..+.+.+ ++..+.|+..|. ...+.+|.++...... +.
T Consensus 20 ~~k~vlItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 91 (274)
T 1ja9_A 20 AGKVALTTGAGRG-IGRGIAIELGRRGASVVVNYGSSSKAA-------EEVVAELKKLGAQGVAIQADISKPSEVVALFD 91 (274)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHH-------HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCchHHH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 4678999994332 2233444431 2468888887444332 223455665554 3456778876443111 11
Q ss_pred -----CCcccEEEEcCC
Q 041136 95 -----QMKFDVIIFNFP 106 (214)
Q Consensus 95 -----~~~FD~IiFNFP 106 (214)
-...|.||.|=-
T Consensus 92 ~~~~~~~~~d~vi~~Ag 108 (274)
T 1ja9_A 92 KAVSHFGGLDFVMSNSG 108 (274)
T ss_dssp HHHHHHSCEEEEECCCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 126898887643
No 345
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=32.78 E-value=40 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=9.8
Q ss_pred CCCCcccEEEEcCCC
Q 041136 93 LSQMKFDVIIFNFPH 107 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH 107 (214)
++++.+|.|| |.|-
T Consensus 92 i~~g~i~lVI-nt~~ 105 (143)
T 2yvq_A 92 IRDGSIDLVI-NLPN 105 (143)
T ss_dssp HHTTSCCEEE-ECCC
T ss_pred HHCCCceEEE-ECCC
Confidence 3567789887 6674
No 346
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=32.75 E-value=13 Score=31.51 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=37.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCcc-HHHHHHHHHhCCCEEEEcc--cc-ccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWT-SQAHLQSLWSRGCLVLHGV--NV-HTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~-a~~ni~~L~~~g~~Vl~~V--DA-t~L~~~~~ 92 (214)
++.+|||++||-=-|++ +-.-++|+... .+|.+ +..-++.|+..|..|-|=- |+ ..+....
T Consensus 1 ~~~~~~l~~gesw~~~~------------~~~kg~~~~~~--~~y~~g~~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~- 65 (248)
T 3soz_A 1 SNAMKILFIGESWHIHM------------IHSKGFDSFTS--SKYEEGADYLLSCLRQGNIDVDYMPAHIVQTRFPQTA- 65 (248)
T ss_dssp ---CEEEEEECCCEEEE------------EEEETTEEEEE--EEECCCSHHHHHHHTTTTCEEEEEETTHHHHSCCCSH-
T ss_pred CCceEEEEecCceeeee------------eEeeccccccc--chhhhhHHHHHHHHhcCCceeEEeCchhhhhhCCCCh-
Confidence 35789999999544332 12223444332 34543 3445778998887766421 11 1111100
Q ss_pred CCCCcccEEEEc
Q 041136 93 LSQMKFDVIIFN 104 (214)
Q Consensus 93 ~~~~~FD~IiFN 104 (214)
-.-..||.||+.
T Consensus 66 ~~L~~yDvIIl~ 77 (248)
T 3soz_A 66 EALACYDAIVIS 77 (248)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHHhcCCEEEEc
Confidence 011569999987
No 347
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=32.75 E-value=36 Score=29.76 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=50.7
Q ss_pred CeEEEEecCc--------hhHHHHHHHH---hCCCCcEEEeecCChHHH----HhcCccHHH-HHHHHHhCCCEEEEccc
Q 041136 20 QRILLVGEGD--------FSFSDCLARA---FGSATNMVASSLDSERTL----KTKHWTSQA-HLQSLWSRGCLVLHGVN 83 (214)
Q Consensus 20 ~~ILlVGeGn--------FSFS~sLa~~---~~~~~~l~ATs~ds~~~l----~~kY~~a~~-ni~~L~~~g~~Vl~~VD 83 (214)
.++++||-|+ +-++..++.. .+....+..|-++..+.+ ....+...+ -.+.|++.|+.++.+..
T Consensus 143 ~~~vVVGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~~ 222 (430)
T 3h28_A 143 PGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVA 222 (430)
T ss_dssp CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCE
T ss_pred CCeEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCCE
Confidence 4567888775 5566666543 332112233333333322 112233333 34778899999999877
Q ss_pred cccCCCCC----C----CCCCcccEEEEcCCCCC
Q 041136 84 VHTMDRHP----T----LSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 84 At~L~~~~----~----~~~~~FD~IiFNFPH~G 109 (214)
++.+.... . -....+|.||+--+..+
T Consensus 223 v~~v~~~~v~~~~~~~~g~~i~~D~vv~a~G~~~ 256 (430)
T 3h28_A 223 VKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQG 256 (430)
T ss_dssp EEEECSSEEEEECTTSCEEEEECSEEEEECEEEC
T ss_pred EEEEeCCeEEEEecCCCceEEeeeEEEECCCCcc
Confidence 77665421 0 11247899999766654
No 348
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=32.67 E-value=1.5e+02 Score=23.05 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=67.0
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCC-CC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHP-TL 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~-~~ 93 (214)
.+++||+.| -|..-.+ |++.+ ..+.+|++++.+... ++.+...++ .+ +..|.+ +... .+
T Consensus 20 ~~~~ilVtGatG~iG~~--l~~~L~~~G~~V~~~~R~~~~------------~~~~~~~~~~~~-~~~Dl~--~~~~~~~ 82 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARY--LLSELKNKGHEPVAMVRNEEQ------------GPELRERGASDI-VVANLE--EDFSHAF 82 (236)
T ss_dssp -CCEEEEETTTSHHHHH--HHHHHHHTTCEEEEEESSGGG------------HHHHHHTTCSEE-EECCTT--SCCGGGG
T ss_pred CCCeEEEECCCChHHHH--HHHHHHhCCCeEEEEECChHH------------HHHHHhCCCceE-EEcccH--HHHHHHH
Confidence 478999999 4555443 44443 235689998876532 233444566 54 455776 2211 12
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCC-C---------C--Cccc
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDH-P---------Y--NQWN 160 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~-P---------y--~~W~ 160 (214)
...|.||.|-.-... .+.. ..+..|-.-....++.|.+. ..|+| +++-..+. | | ..+.
T Consensus 83 --~~~D~vi~~ag~~~~----~~~~-~~~~~n~~~~~~l~~a~~~~--~~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~ 153 (236)
T 3e8x_A 83 --ASIDAVVFAAGSGPH----TGAD-KTILIDLWGAIKTIQEAEKR--GIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRL 153 (236)
T ss_dssp --TTCSEEEECCCCCTT----SCHH-HHHHTTTHHHHHHHHHHHHH--TCCEEEEECCTTCSCGGGSCGGGHHHHHHHHH
T ss_pred --cCCCEEEECCCCCCC----CCcc-ccchhhHHHHHHHHHHHHHc--CCCEEEEEecCCCCCCCCChhhhhhHHHHHHH
Confidence 368999987653321 1111 12233433344445555332 23555 44422111 1 1 1344
Q ss_pred HhhHHHhcCCEEEEEec
Q 041136 161 VMGLADKLGLVLKEKVE 177 (214)
Q Consensus 161 i~~lA~~~gl~l~~~~~ 177 (214)
++.+.+..|+.+.-..|
T Consensus 154 ~e~~~~~~gi~~~~lrp 170 (236)
T 3e8x_A 154 ADDELKRSSLDYTIVRP 170 (236)
T ss_dssp HHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHCCCCEEEEeC
Confidence 55666677887655433
No 349
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=32.24 E-value=70 Score=25.75 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++||+.| ..| ...+|++.+ ..+..|++++..... + ..++.+ +..|.++......+-...
T Consensus 3 ~~~ilVtG-aG~-iG~~l~~~L~~~g~~V~~~~r~~~~---------------~-~~~~~~-~~~Dl~d~~~~~~~~~~~ 63 (286)
T 3gpi_A 3 LSKILIAG-CGD-LGLELARRLTAQGHEVTGLRRSAQP---------------M-PAGVQT-LIADVTRPDTLASIVHLR 63 (286)
T ss_dssp CCCEEEEC-CSH-HHHHHHHHHHHTTCCEEEEECTTSC---------------C-CTTCCE-EECCTTCGGGCTTGGGGC
T ss_pred CCcEEEEC-CCH-HHHHHHHHHHHCCCEEEEEeCCccc---------------c-ccCCce-EEccCCChHHHHHhhcCC
Confidence 36899999 444 244455554 234689998876432 0 134444 355766654432232345
Q ss_pred ccEEEEcC
Q 041136 98 FDVIIFNF 105 (214)
Q Consensus 98 FD~IiFNF 105 (214)
+|.||.+-
T Consensus 64 ~d~vih~a 71 (286)
T 3gpi_A 64 PEILVYCV 71 (286)
T ss_dssp CSEEEECH
T ss_pred CCEEEEeC
Confidence 99999654
No 350
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=32.05 E-value=96 Score=26.80 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=35.1
Q ss_pred CCCCCCeEEEEecCch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE
Q 041136 15 HYTNNQRILLVGEGDF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL 77 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~ 77 (214)
..+.+++||++|-|.. .++..||+.+| ...|+||..+.+ .++.++++|+.
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~ 232 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPE------------RLKLLSDAGFE 232 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHH------------HHHHHHTTTCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHH------------HHHHHHHcCCc
Confidence 3567899999998875 35667788886 337888875432 24556778885
No 351
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=31.86 E-value=69 Score=22.53 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=39.1
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.++|+++|=|..-.. +++.+. .+..+++...+.+ .++.++..|..++. .|.++.+......-..
T Consensus 6 ~~~v~I~G~G~iG~~--~a~~l~~~g~~v~~~d~~~~------------~~~~~~~~~~~~~~-~d~~~~~~l~~~~~~~ 70 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGS--IVKELHRMGHEVLAVDINEE------------KVNAYASYATHAVI-ANATEENELLSLGIRN 70 (144)
T ss_dssp CCSEEEECCSHHHHH--HHHHHHHTTCCCEEEESCHH------------HHHTTTTTCSEEEE-CCTTCHHHHHTTTGGG
T ss_pred CCcEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCHH------------HHHHHHHhCCEEEE-eCCCCHHHHHhcCCCC
Confidence 457999998877665 444331 2345666544321 13334445665543 3554322111112346
Q ss_pred ccEEEEcCCC
Q 041136 98 FDVIIFNFPH 107 (214)
Q Consensus 98 FD~IiFNFPH 107 (214)
.|.||..-|.
T Consensus 71 ~d~vi~~~~~ 80 (144)
T 2hmt_A 71 FEYVIVAIGA 80 (144)
T ss_dssp CSEEEECCCS
T ss_pred CCEEEECCCC
Confidence 8999987664
No 352
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=31.68 E-value=1.3e+02 Score=28.77 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCeEEEEe--cCchhHHHHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCC
Q 041136 19 NQRILLVG--EGDFSFSDCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 19 ~~~ILlVG--eGnFSFS~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~ 94 (214)
...||.|| -|=+|....-| +..+..+.|+|---..... .+.+.++...-.+ ++|++ -|++++.-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~------~a~~~v~~N~~~dkVtVI~-gd~eev~L----- 425 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV------VTLENWQFEEWGSQVTVVS-SDMREWVA----- 425 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH------HHHHHHHHHTTGGGEEEEE-SCTTTCCC-----
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH------HHHHHHHhccCCCeEEEEe-CcceeccC-----
Confidence 45688999 66675543333 3333333456654322211 1333443333223 45555 47776642
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGE 145 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~ 145 (214)
.++.|.||.-- .|.. . .|..++ ..+.++.++|+|+|.
T Consensus 426 PEKVDIIVSEw--MG~f-L----------l~E~ml-evL~Ardr~LKPgGi 462 (637)
T 4gqb_A 426 PEKADIIVSEL--LGSF-A----------DNELSP-ECLDGAQHFLKDDGV 462 (637)
T ss_dssp SSCEEEEECCC--CBTT-B----------GGGCHH-HHHHHHGGGEEEEEE
T ss_pred CcccCEEEEEc--Cccc-c----------cccCCH-HHHHHHHHhcCCCcE
Confidence 37899999764 3331 0 122233 566778889999876
No 353
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=31.20 E-value=1.9e+02 Score=23.52 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=44.8
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
++++|+.| -|..- +++|+.+. .+.+|++++.+.+. .++..++|+..|. ...+.+|.++......+
T Consensus 28 ~k~~lVTGas~GIG--~aia~~la~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (283)
T 3v8b_A 28 SPVALITGAGSGIG--RATALALAADGVTVGALGRTRTE--------VEEVADEIVGAGGQAIALEADVSDELQMRNAVR 97 (283)
T ss_dssp CCEEEEESCSSHHH--HHHHHHHHHTTCEEEEEESSHHH--------HHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCCHHH--HHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 56789998 34333 33554431 24688888776422 2334556665554 55677888875432111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
.-.+.|.+|.|==
T Consensus 98 ~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 98 DLVLKFGHLDIVVANAG 114 (283)
T ss_dssp HHHHHHSCCCEEEECCC
T ss_pred HHHHHhCCCCEEEECCC
Confidence 1136899888743
No 354
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=31.04 E-value=24 Score=28.45 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=42.8
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.| -|..-.+ |++.+. .+.+|++++.+... ..+..+.+...+....+.+|.++......+ .
T Consensus 15 ~~k~vlITGasggiG~~--~a~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 84 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGET--TAKLFVRYGAKVVIADIADDH--------GQKVCNNIGSPDVISFVHCDVTKDEDVRNLVD 84 (278)
T ss_dssp TTCEEEEESTTSHHHHH--HHHHHHHTTCEEEEEESCHHH--------HHHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHH--HHHHHHHCCCEEEEEcCChhH--------HHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 467899999 4444333 444431 24678888765422 112233443333456677888875431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
....|.||.|-
T Consensus 85 ~~~~~~~~id~li~~A 100 (278)
T 2bgk_A 85 TTIAKHGKLDIMFGNV 100 (278)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 13689999875
No 355
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=31.03 E-value=83 Score=28.53 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=41.5
Q ss_pred CCCCCeEEEEecCchhHH-HH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFS-DC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS-~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..+.++|++||=|.=--| +| +....| ..|+ +.|..+. ...+.|++.|+.+..|-|+..+.
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~--~~D~~~~---------~~~~~l~~~gi~~~~g~~~~~~~----- 80 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEG--YQIS--GSDLAPN---------SVTQHLTALGAQIYFHHRPENVL----- 80 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTT--CEEE--EECSSCC---------HHHHHHHHTTCEEESSCCGGGGT-----
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEE--EEECCCC---------HHHHHHHHCCCEEECCCCHHHcC-----
Confidence 345689999998865543 22 233333 3454 4464321 13567888999999987665542
Q ss_pred CCCcccEEEEc
Q 041136 94 SQMKFDVIIFN 104 (214)
Q Consensus 94 ~~~~FD~IiFN 104 (214)
.+|.||..
T Consensus 81 ---~~d~vV~S 88 (494)
T 4hv4_A 81 ---DASVVVVS 88 (494)
T ss_dssp ---TCSEEEEC
T ss_pred ---CCCEEEEC
Confidence 37999986
No 356
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=31.02 E-value=35 Score=27.58 Aligned_cols=79 Identities=19% Similarity=0.395 Sum_probs=45.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTLS- 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~~- 94 (214)
.++++|+.|=+.. .-+++|+.+. .+.+|++++.+.+. .++..++|+..|. ...+.+|.++.+....+-
T Consensus 6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 76 (252)
T 3h7a_A 6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEK--------LAPLVAEIEAAGGRIVARSLDARNEDEVTAFLN 76 (252)
T ss_dssp CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGG--------GHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHH
Confidence 4578999994422 2334554431 24689988876432 2334556666565 455678888755421111
Q ss_pred ----CCcccEEEEcC
Q 041136 95 ----QMKFDVIIFNF 105 (214)
Q Consensus 95 ----~~~FD~IiFNF 105 (214)
..+.|.+|.|=
T Consensus 77 ~~~~~g~id~lv~nA 91 (252)
T 3h7a_A 77 AADAHAPLEVTIFNV 91 (252)
T ss_dssp HHHHHSCEEEEEECC
T ss_pred HHHhhCCceEEEECC
Confidence 14689888774
No 357
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=30.94 E-value=89 Score=28.17 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=35.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L 87 (214)
++.++|+++|=|.+-++ ||+.+.. .+.-.|..|..++. ++.|. .+++.+++| |||+.
T Consensus 1 ~~~M~iiI~G~G~vG~~--la~~L~~-~~~~v~vId~d~~~----------~~~~~~~~~~~~i~G-d~~~~ 58 (461)
T 4g65_A 1 SNAMKIIILGAGQVGGT--LAENLVG-ENNDITIVDKDGDR----------LRELQDKYDLRVVNG-HASHP 58 (461)
T ss_dssp -CCEEEEEECCSHHHHH--HHHHTCS-TTEEEEEEESCHHH----------HHHHHHHSSCEEEES-CTTCH
T ss_pred CCcCEEEEECCCHHHHH--HHHHHHH-CCCCEEEEECCHHH----------HHHHHHhcCcEEEEE-cCCCH
Confidence 46789999999998887 8988843 23444556654332 23333 346666665 56543
No 358
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=30.81 E-value=36 Score=26.68 Aligned_cols=34 Identities=12% Similarity=0.381 Sum_probs=24.0
Q ss_pred CCCCC-eEEEEecCchhHHHHHHHH----hCCCCcEEEeec
Q 041136 16 YTNNQ-RILLVGEGDFSFSDCLARA----FGSATNMVASSL 51 (214)
Q Consensus 16 ~~~~~-~ILlVGeGnFSFS~sLa~~----~~~~~~l~ATs~ 51 (214)
|...+ .|++++=|+ ||.+|+.. +|...++.|-++
T Consensus 17 ~~~~~~~iII~sHG~--~A~gl~~s~~~i~G~~~~v~av~~ 55 (159)
T 3mtq_A 17 FQGMKRHYIFASHGS--FANGLLNSVELILGKQPDIHTLCA 55 (159)
T ss_dssp CSSCCEEEEEEEETT--HHHHHHHHHHHHHCCCTTEEEEEE
T ss_pred hhccCceEEEEeCcH--HHHHHHHHHHHHcCCCCCeEEEEC
Confidence 34343 499999998 68888654 465568888775
No 359
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=30.75 E-value=20 Score=29.57 Aligned_cols=78 Identities=12% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|= |.. -+++|+.+ ..+.+|++++.+.+ ..++.+++|+..|. ...+.+|.++.+....+
T Consensus 25 ~gk~~lVTGas~gI--G~aia~~la~~G~~V~~~~r~~~--------~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~ 94 (271)
T 4ibo_A 25 GGRTALVTGSSRGL--GRAMAEGLAVAGARILINGTDPS--------RVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAF 94 (271)
T ss_dssp TTCEEEETTCSSHH--HHHHHHHHHHTTCEEEECCSCHH--------HHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEeCCHH--------HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 4678888883 333 33344443 12468888876542 23345667776664 45567788875432111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.+|-|=
T Consensus 95 ~~~~~~~g~iD~lv~nA 111 (271)
T 4ibo_A 95 ARLDEQGIDVDILVNNA 111 (271)
T ss_dssp HHHHHHTCCCCEEEECC
T ss_pred HHHHHHCCCCCEEEECC
Confidence 123689888773
No 360
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=30.53 E-value=21 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=20.7
Q ss_pred CeEEEEec-CchhHHHHHHHHhCCCCcEEEeecCC
Q 041136 20 QRILLVGE-GDFSFSDCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 20 ~~ILlVGe-GnFSFS~sLa~~~~~~~~l~ATs~ds 53 (214)
++||+.|= |.. -.+|++.+..+.+|++++.+.
T Consensus 4 M~vlVtGasg~i--G~~~~~~l~~g~~V~~~~r~~ 36 (202)
T 3d7l_A 4 MKILLIGASGTL--GSAVKERLEKKAEVITAGRHS 36 (202)
T ss_dssp CEEEEETTTSHH--HHHHHHHHTTTSEEEEEESSS
T ss_pred cEEEEEcCCcHH--HHHHHHHHHCCCeEEEEecCc
Confidence 47999994 433 334665543456898888764
No 361
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.53 E-value=1.2e+02 Score=24.91 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=41.6
Q ss_pred CeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 20 QRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
.+|-+||=+|...... +...++ .+|..-++++++++. .-++.|++.|+.|+.|
T Consensus 107 ~kIavVg~~~~~~~~~~i~~ll~--~~i~~~~~~~~ee~~-------~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 107 SSIGVVTYQETIPALVAFQKTFN--LRLDQRSYITEEDAR-------GQINELKANGTEAVVG 160 (225)
T ss_dssp SCEEEEEESSCCHHHHHHHHHHT--CCEEEEEESSHHHHH-------HHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCchhhhHHHHHHHHhC--CceEEEEeCCHHHHH-------HHHHHHHHCCCCEEEC
Confidence 5899999888877644 556665 578888899987754 4689999999988877
No 362
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=30.14 E-value=33 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHH-HHhC----CCEEEEccccccCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS-LWSR----GCLVLHGVNVHTMD 88 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~~----g~~Vl~~VDAt~L~ 88 (214)
.+-.++++++.||.++.++++ +...+|-.+..++|...+.+ . ++.+++ |+.. +..|+.+.|...|.
T Consensus 356 ~~l~Gkrv~i~gd~~~~~~la~~L~ElGm~vv~v~~~~~~~~-~-------~~~~~~ll~~~~~~~~~~v~~~~d~~~l~ 427 (519)
T 1qgu_B 356 TWLHGKKFGLYGDPDFVMGLTRFLLELGCEPTVILSHNANKR-W-------QKAMNKMLDASPYGRDSEVFINCDLWHFR 427 (519)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHHHHHTTCEEEEEEETTCCHH-H-------HHHHHHHHHHSTTCTTCEEEESCCHHHHH
T ss_pred HHcCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEeCCCCHH-H-------HHHHHHHHHhcCCCCCCEEEECCCHHHHH
Confidence 345789999999998877643 22345532222333333321 1 122322 3332 57888887777664
Q ss_pred C
Q 041136 89 R 89 (214)
Q Consensus 89 ~ 89 (214)
+
T Consensus 428 ~ 428 (519)
T 1qgu_B 428 S 428 (519)
T ss_dssp H
T ss_pred H
Confidence 3
No 363
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=29.88 E-value=17 Score=32.78 Aligned_cols=20 Identities=0% Similarity=0.155 Sum_probs=15.6
Q ss_pred CCCCCeEEEEecCchhHHHH
Q 041136 16 YTNNQRILLVGEGDFSFSDC 35 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~s 35 (214)
+-.++|+.+.||+++.++++
T Consensus 304 ~l~Gkrv~i~g~~~~~~~l~ 323 (437)
T 3aek_A 304 TLTGKSLFMFPDSQLEIPLA 323 (437)
T ss_dssp HHTTCEEEECSSSSCHHHHH
T ss_pred HhCCCEEEEEcCchHHHHHH
Confidence 34579999999998877643
No 364
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=29.77 E-value=29 Score=28.96 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.|=+.+ .-++||+.+. .+.+|++++.+... .++..++|+..|. ...+.+|.++.+....+ .
T Consensus 30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPA--------LEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHH--------HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 4678999994322 2333555431 24689998876432 2334556666554 45677888875542111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
....|.||.|=
T Consensus 101 ~~~~~~g~id~lvnnA 116 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNA 116 (301)
T ss_dssp HHHHHHSSCSEEEECC
T ss_pred HHHHhCCCCCEEEECC
Confidence 13689888773
No 365
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=29.52 E-value=97 Score=25.32 Aligned_cols=80 Identities=13% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~ 93 (214)
-.++++|+.| -|..= +++|+.+ ..+.+|++++..+.+.+ ++.+++++..|. ...+.+|.++.+....+
T Consensus 27 ~~~k~~lVTGas~GIG--~aia~~la~~G~~V~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 97 (280)
T 4da9_A 27 KARPVAIVTGGRRGIG--LGIARALAASGFDIAITGIGDAEGV-------APVIAELSGLGARVIFLRADLADLSSHQAT 97 (280)
T ss_dssp CCCCEEEEETTTSHHH--HHHHHHHHHTTCEEEEEESCCHHHH-------HHHHHHHHHTTCCEEEEECCTTSGGGHHHH
T ss_pred cCCCEEEEecCCCHHH--HHHHHHHHHCCCeEEEEeCCCHHHH-------HHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 3567899999 34333 3344443 12468888886554433 234556666554 45677899886652111
Q ss_pred C------CCcccEEEEcC
Q 041136 94 S------QMKFDVIIFNF 105 (214)
Q Consensus 94 ~------~~~FD~IiFNF 105 (214)
- -.+.|.+|.|=
T Consensus 98 ~~~~~~~~g~iD~lvnnA 115 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNA 115 (280)
T ss_dssp HHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 1 13689999884
No 366
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=28.64 E-value=86 Score=26.11 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCCC-eEEEEec-CchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC-C-CC
Q 041136 17 TNNQ-RILLVGE-GDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD-R-HP 91 (214)
Q Consensus 17 ~~~~-~ILlVGe-GnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~-~-~~ 91 (214)
..++ +||+.|- |..-- +..||+..| ..+++|+...+ .++.++++|+...++. ++.. . ..
T Consensus 147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~------------~~~~~~~lGa~~~i~~--~~~~~~~~~ 210 (328)
T 1xa0_A 147 TPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAA------------EHDYLRVLGAKEVLAR--EDVMAERIR 210 (328)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTT------------CHHHHHHTTCSEEEEC--C--------
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHH------------HHHHHHHcCCcEEEec--CCcHHHHHH
Confidence 3444 8999996 77654 556677776 36888876432 1344556787554433 2221 1 11
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+....+|.||-+ +|... +..+-.+|+++|++.+.
T Consensus 211 ~~~~~~~d~vid~---~g~~~--------------------~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 211 PLDKQRWAAAVDP---VGGRT--------------------LATVLSRMRYGGAVAVS 245 (328)
T ss_dssp -CCSCCEEEEEEC---STTTT--------------------HHHHHHTEEEEEEEEEC
T ss_pred HhcCCcccEEEEC---CcHHH--------------------HHHHHHhhccCCEEEEE
Confidence 1233468987654 34310 23466788999997543
No 367
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=28.44 E-value=78 Score=26.89 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
.++||++||..=.++.+|+. .++++.+ |+..... ....| .|..|.++.+.... ....|
T Consensus 20 ~~~~l~~~~~~~~~~~~l~~-----~~~~~~~-~~~~~~~----~~~~~------~~~~~~~~~~~~~~------~~~~~ 77 (343)
T 2pjd_A 20 QSRILFAGDLQDDLPARLDT-----AASRAHT-QQFHHWQ----VLSRQ------MGDNARFSLVATAD------DVADC 77 (343)
T ss_dssp TCEEEEEECCCSSHHHHSCC-----SEEEEEE-SBHHHHH----HHHHH------HGGGEEECSSCCHH------HHTTC
T ss_pred CCeEEEEcCCCChhhhhhhh-----CCCEEEE-CCHHHHH----HHHhh------cCCceEeccCCCcc------ccCCC
Confidence 35899999776555555541 2333333 3322111 01112 16667776543221 11358
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|.|+.-.|- ++.++..-+..+...+.+++++++.
T Consensus 78 ~~~~~~~pk-----------------~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (343)
T 2pjd_A 78 DTLIYYWPK-----------------NKPEAQFQLMNLLSLLPVGTDIFVV 111 (343)
T ss_dssp SEEEEECCS-----------------SHHHHHHHHHHHHTTSCTTCEEEEE
T ss_pred CEEEEECCC-----------------ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999998885 2345666677788889999999776
No 368
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=28.37 E-value=40 Score=26.51 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=19.4
Q ss_pred CeEEEEecCchhHHHHHHHHhC-CCCcEEEeecC
Q 041136 20 QRILLVGEGDFSFSDCLARAFG-SATNMVASSLD 52 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~d 52 (214)
++|+++|-|.+..+ +|+.+. .+..+++...|
T Consensus 1 M~iiIiG~G~~G~~--la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGGETTAYY--LARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CCEEEECCHHHHHH--HHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHH--HHHHHHhCCCeEEEEECC
Confidence 47999999887655 555442 23456655443
No 369
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=28.13 E-value=1.2e+02 Score=25.72 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=35.4
Q ss_pred HHHHHHHHHh--CCCEEEEccccc-cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhcc
Q 041136 64 SQAHLQSLWS--RGCLVLHGVNVH-TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREML 140 (214)
Q Consensus 64 a~~ni~~L~~--~g~~Vl~~VDAt-~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL 140 (214)
+.+|++..-- ..+.++.| ||. .|.+ +...+||.|..+-= + . + =...+|..+..+|
T Consensus 177 ar~n~~~~gl~~~~I~li~G-da~etL~~---~~~~~~d~vfIDaD----~----y---------~-~~~~~Le~~~p~L 234 (282)
T 2wk1_A 177 VRRNFRNYDLLDEQVRFLPG-WFKDTLPT---APIDTLAVLRMDGD----L----Y---------E-STWDTLTNLYPKV 234 (282)
T ss_dssp HHHHHHHTTCCSTTEEEEES-CHHHHSTT---CCCCCEEEEEECCC----S----H---------H-HHHHHHHHHGGGE
T ss_pred HHHHHHHcCCCcCceEEEEe-CHHHHHhh---CCCCCEEEEEEcCC----c----c---------c-cHHHHHHHHHhhc
Confidence 4455554321 22445544 554 3433 33467999988841 1 0 1 1235677788999
Q ss_pred CCCCEEEE
Q 041136 141 GEGGEVHV 148 (214)
Q Consensus 141 ~~~G~i~V 148 (214)
++||-|.+
T Consensus 235 ~pGGiIv~ 242 (282)
T 2wk1_A 235 SVGGYVIV 242 (282)
T ss_dssp EEEEEEEE
T ss_pred CCCEEEEE
Confidence 99996544
No 370
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=28.08 E-value=58 Score=28.12 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccc---ccc----C
Q 041136 16 YTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVN---VHT----M 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VD---At~----L 87 (214)
...+++||++|-|..- ++..||+..| ...|+||+...+ .++.++++|+...++.+ ..+ +
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~~~~v 259 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPN------------RLKLAEEIGADLTLNRRETSVEERRKAI 259 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHH------------HHHHHHHTTCSEEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHH------------HHHHHHHcCCcEEEeccccCcchHHHHH
Confidence 4568999999977654 3555677775 247898875432 24456667876554433 111 1
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+. ..+..+|.||=+ +|... .+..+.++|+++|++.+.
T Consensus 260 ~~~--~~g~g~Dvvid~---~g~~~-------------------~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 260 MDI--THGRGADFILEA---TGDSR-------------------ALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHH--TTTSCEEEEEEC---SSCTT-------------------HHHHHHHHEEEEEEEEEC
T ss_pred HHH--hCCCCCcEEEEC---CCCHH-------------------HHHHHHHHHhcCCEEEEE
Confidence 110 123468887744 33210 133466788999987543
No 371
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=28.06 E-value=1.5e+02 Score=23.82 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=45.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
-.++++|+.|=+.. .-+++|+.+. .+.+|++++.+.+ . .++..+.|+..|. ...+.+|.++.+....+
T Consensus 9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~-~-------~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (264)
T 3ucx_A 9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVE-R-------LEDVAKQVTDTGRRALSVGTDITDDAQVAHLV 79 (264)
T ss_dssp TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHH-H-------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHH-H-------HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 45788999994331 2333444431 2467888877542 2 2334556666554 45677888875542111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
.-.+.|.+|.|=
T Consensus 80 ~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 80 DETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHTSCCSEEEECC
T ss_pred HHHHHHcCCCcEEEECC
Confidence 124689999885
No 372
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=27.70 E-value=1e+02 Score=30.25 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=56.1
Q ss_pred CCeEEEEe--cCchhHHHHHH-HHhC---------CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccc
Q 041136 19 NQRILLVG--EGDFSFSDCLA-RAFG---------SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVH 85 (214)
Q Consensus 19 ~~~ILlVG--eGnFSFS~sLa-~~~~---------~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt 85 (214)
...||.|| -|=+|+...-| +..+ .+..|+|.--....... .+ ......-.+ ++|+ .-|++
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~-----l~-~~~~Ng~~d~VtVI-~gd~e 482 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVT-----LK-YMNVRTWKRRVTII-ESDMR 482 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHH-----HH-HHHHHTTTTCSEEE-ESCGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHH-----HH-HHHhcCCCCeEEEE-eCchh
Confidence 45689998 88898643222 2122 23356665443322211 11 111111123 4554 44677
Q ss_pred cCCCC-CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCE
Q 041136 86 TMDRH-PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGE 145 (214)
Q Consensus 86 ~L~~~-~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~ 145 (214)
++.-- ..-..++.|.||.----..+ ..+|....+.++..+|+++|.
T Consensus 483 ev~lp~~~~~~ekVDIIVSElmGsfl--------------~nEL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 483 SLPGIAKDRGFEQPDIIVSELLGSFG--------------DNELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp GHHHHHHHTTCCCCSEEEECCCBTTB--------------GGGSHHHHHHTTGGGSCTTCE
T ss_pred hcccccccCCCCcccEEEEecccccc--------------chhccHHHHHHHHHhCCCCcE
Confidence 65420 00013689999998774322 133666677788899999986
No 373
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=27.37 E-value=1.1e+02 Score=25.46 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCC-eEEEEec-CchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 17 TNNQ-RILLVGE-GDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~-~ILlVGe-GnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..++ +||+.|- |..-- +..||+..| ..+++|+...+ .++.++++|+...++.+-..-.....+
T Consensus 148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~------------~~~~~~~lGa~~v~~~~~~~~~~~~~~ 213 (330)
T 1tt7_A 148 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNRE------------AADYLKQLGASEVISREDVYDGTLKAL 213 (330)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSS------------THHHHHHHTCSEEEEHHHHCSSCCCSS
T ss_pred CCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHH------------HHHHHHHcCCcEEEECCCchHHHHHHh
Confidence 3444 8999996 87754 555677776 36888876432 123444567755544322110111123
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
....+|.||=+ +|.. . +..+-++|+++|++.+
T Consensus 214 ~~~~~d~vid~---~g~~----------------~----~~~~~~~l~~~G~iv~ 245 (330)
T 1tt7_A 214 SKQQWQGAVDP---VGGK----------------Q----LASLLSKIQYGGSVAV 245 (330)
T ss_dssp CCCCEEEEEES---CCTH----------------H----HHHHHTTEEEEEEEEE
T ss_pred hcCCccEEEEC---CcHH----------------H----HHHHHHhhcCCCEEEE
Confidence 33468987643 3420 1 3346678899998754
No 374
>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*
Probab=27.27 E-value=57 Score=29.34 Aligned_cols=89 Identities=13% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCCCCCeEEEEe-cCchhHHHHHHHHhCC-CCcEEEeecCChHHHHh-----cCccHHHHHHHHHhCCC-EEEEcccccc
Q 041136 15 HYTNNQRILLVG-EGDFSFSDCLARAFGS-ATNMVASSLDSERTLKT-----KHWTSQAHLQSLWSRGC-LVLHGVNVHT 86 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~-----kY~~a~~ni~~L~~~g~-~Vl~~VDAt~ 86 (214)
+...++++|+.| -+..-.+.++++.+.. +.+|+.++++....... -| +.+.-.+.++..|. ...+.+|+++
T Consensus 56 ~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~Dvtd 134 (418)
T 4eue_A 56 GFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWY-NNIFFKEFAKKKGLVAKNFIEDAFS 134 (418)
T ss_dssp CCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHH-HHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccc-hHHHHHHHHHHcCCcEEEEEeeCCC
Confidence 347788999999 5566677567777753 67899988875432100 00 11222233455565 4567889987
Q ss_pred CCCCCCC------CCCcccEEEEc
Q 041136 87 MDRHPTL------SQMKFDVIIFN 104 (214)
Q Consensus 87 L~~~~~~------~~~~FD~IiFN 104 (214)
.+....+ .-.+.|.+|.|
T Consensus 135 ~~~v~~~v~~i~~~~G~IDiLVnN 158 (418)
T 4eue_A 135 NETKDKVIKYIKDEFGKIDLFVYS 158 (418)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5432111 12578999988
No 375
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=27.14 E-value=39 Score=26.91 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=43.1
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-C
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-~ 94 (214)
+++||+.| -|.. -.+|++.+. .+.+|++++..+.+.+ .+..+.|+..+.. ..+.+|.++.+....+ .
T Consensus 7 ~k~vlITGasggi--G~~~a~~l~~~G~~V~~~~r~~~~~~-------~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 7 GKVVVITGSSTGL--GKSMAIRFATEKAKVVVNYRSKEDEA-------NSVLEEIKKVGGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp TCEEEETTCSSHH--HHHHHHHHHHTTCEEEEEESSCHHHH-------HHHHHHHHHTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCChH--HHHHHHHHHHCCCEEEEEcCCChHHH-------HHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 57899998 4433 333544431 2467888887443322 2234555555553 4567788865431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
-...|.||.|=
T Consensus 78 ~~~~~~g~id~li~~A 93 (261)
T 1gee_A 78 SAIKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 12689998874
No 376
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=27.10 E-value=72 Score=27.41 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC----C
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD----R 89 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~----~ 89 (214)
....+++||++|-|..- ++..||++.| ...+++|....+ .++.++++|+...++.+..++. +
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~i~~ 245 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQAT------------KRRLAEEVGATATVDPSAGDVVEAIAG 245 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHH------------HHHHHHHHTCSEEECTTSSCHHHHHHS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHH------------HHHHHHHcCCCEEECCCCcCHHHHHHh
Confidence 34678999999988664 3555677775 336787754321 2445566787655543322211 1
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+....+|.|+=. +|.. ..+..+..+|+++|++.+.
T Consensus 246 ~~~~~~gg~Dvvid~---~G~~-------------------~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 246 PVGLVPGGVDVVIEC---AGVA-------------------ETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTSSSTTCEEEEEEC---SCCH-------------------HHHHHHHHHEEEEEEEEEC
T ss_pred hhhccCCCCCEEEEC---CCCH-------------------HHHHHHHHHhccCCEEEEE
Confidence 000223378987642 4431 1234567789999998553
No 377
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=27.06 E-value=69 Score=25.06 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=42.2
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCC-CEEEEccccccCCCCCCC-C
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRG-CLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g-~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++|+.|=+.+ .-+++++.+. .+.+|++++.+.+. + ++..+++. ..| ....+.+|.++.+....+ .
T Consensus 2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDR-L-------EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHH
Confidence 467899993321 3344555532 24678888876432 1 22233332 224 455677898875542111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
..+.|.+|.|=
T Consensus 73 ~~~~~~g~id~li~~A 88 (235)
T 3l77_A 73 KVLERFGDVDVVVANA 88 (235)
T ss_dssp -HHHHHSSCSEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 13689888774
No 378
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=26.99 E-value=1e+02 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHhCCCEEEEccccccCCCCC----CCCCCcccEEEEcCCCCC
Q 041136 67 HLQSLWSRGCLVLHGVNVHTMDRHP----TLSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 67 ni~~L~~~g~~Vl~~VDAt~L~~~~----~~~~~~FD~IiFNFPH~G 109 (214)
-.+.|++.|+.++.+..++.+.... .-....+|.||+--|..+
T Consensus 224 ~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~ 270 (409)
T 3h8l_A 224 VASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTG 270 (409)
T ss_dssp HHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEEC
T ss_pred HHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCc
Confidence 4566788899999987776665421 112357999999866544
No 379
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=26.94 E-value=51 Score=26.07 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.| -|..- +++++.+. .+.+|++++.+... .++..+.+++.|. ...+.+|.++.+....+
T Consensus 4 ~~k~vlITGas~gIG--~~~a~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (247)
T 3lyl_A 4 NEKVALVTGASRGIG--FEVAHALASKGATVVGTATSQAS--------AEKFENSMKEKGFKARGLVLNISDIESIQNFF 73 (247)
T ss_dssp TTCEEEESSCSSHHH--HHHHHHHHHTTCEEEEEESSHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 357889998 33332 33444431 24689888876432 2234455666554 45567888875432111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.||.|=
T Consensus 74 ~~~~~~~~~id~li~~A 90 (247)
T 3lyl_A 74 AEIKAENLAIDILVNNA 90 (247)
T ss_dssp HHHHHTTCCCSEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 124689888773
No 380
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=26.93 E-value=35 Score=27.76 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=43.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-- 93 (214)
.+++||+.|=+.+ ...+|++.+. .+.+|++++.+... .++..++|+..|. ...+.+|.++.+....+
T Consensus 30 ~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 30 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHG--------LEETAAKCKGLGAKVHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHH--------HHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHH
Confidence 3578999994332 2334555431 24678888876421 2223455555554 45667888864431111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
.-..+|.||.|=
T Consensus 101 ~~~~~~g~iD~li~~A 116 (272)
T 1yb1_A 101 KVKAEIGDVSILVNNA 116 (272)
T ss_dssp HHHHHTCCCSEEEECC
T ss_pred HHHHHCCCCcEEEECC
Confidence 013689988774
No 381
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=26.69 E-value=1.8e+02 Score=23.34 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=42.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC---
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT--- 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~--- 92 (214)
.++++|+.| -|.. -+++|+.+ ..+.+|++++.+.+. + ++..+++ .+....+.+|.++.+....
T Consensus 29 ~~k~vlVTGas~GI--G~aia~~l~~~G~~Vi~~~r~~~~-~-------~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~ 96 (281)
T 3ppi_A 29 EGASAIVSGGAGGL--GEATVRRLHADGLGVVIADLAAEK-G-------KALADEL--GNRAEFVSTNVTSEDSVLAAIE 96 (281)
T ss_dssp TTEEEEEETTTSHH--HHHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHHH--CTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChH--HHHHHHHHHHCCCEEEEEeCChHH-H-------HHHHHHh--CCceEEEEcCCCCHHHHHHHHH
Confidence 457889998 3433 33344443 124688888876432 1 1223333 2346677888887553111
Q ss_pred -C-CCCcccEEEEcCC
Q 041136 93 -L-SQMKFDVIIFNFP 106 (214)
Q Consensus 93 -~-~~~~FD~IiFNFP 106 (214)
. .-...|.+|.|--
T Consensus 97 ~~~~~~~id~lv~~aa 112 (281)
T 3ppi_A 97 AANQLGRLRYAVVAHG 112 (281)
T ss_dssp HHTTSSEEEEEEECCC
T ss_pred HHHHhCCCCeEEEccC
Confidence 1 1246899998843
No 382
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=26.63 E-value=74 Score=26.36 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=41.1
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC------CCEEEEccccccCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR------GCLVLHGVNVHTMDR 89 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~------g~~Vl~~VDAt~L~~ 89 (214)
..++||+.|= |-.--. |++.+ ..+..|++.+..... ...+++.++.. ....++..|.++...
T Consensus 24 ~~~~vlVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSN--LLEKLLKLNQVVIGLDNFSTG--------HQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp SCCEEEEETTTSHHHHH--HHHHHHHTTCEEEEEECCSSC--------CHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCeEEEECCCcHHHHH--HHHHHHHCCCEEEEEeCCCCC--------chhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 4689999994 544333 44443 234688888875431 12234444432 233445567776432
Q ss_pred CCCCCCCcccEEEEcC
Q 041136 90 HPTLSQMKFDVIIFNF 105 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNF 105 (214)
....- ..+|.||.+=
T Consensus 94 ~~~~~-~~~d~Vih~A 108 (351)
T 3ruf_A 94 CEQVM-KGVDHVLHQA 108 (351)
T ss_dssp HHHHT-TTCSEEEECC
T ss_pred HHHHh-cCCCEEEECC
Confidence 11111 2589988654
No 383
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=26.59 E-value=42 Score=27.26 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--C-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--C-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~-~Vl~~VDAt~L~~~~~ 92 (214)
.+++||+.| -|..-. +|++.+. .+.+|++++.+... ..+..+.++..| . ...+.+|.++......
T Consensus 31 ~~k~vlVTGasggIG~--~la~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 100 (279)
T 1xg5_A 31 RDRLALVTGASGGIGA--AVARALVQQGLKVVGCARTVGN--------IEELAAECKSAGYPGTLIPYRCDLSNEEDILS 100 (279)
T ss_dssp TTCEEEEESTTSHHHH--HHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCSSEEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCchHHH--HHHHHHHHCCCEEEEEECChHH--------HHHHHHHHHhcCCCceEEEEEecCCCHHHHHH
Confidence 467899998 444333 3444431 24688888876421 122234555554 2 3456788886543111
Q ss_pred C-C-----CCcccEEEEcC
Q 041136 93 L-S-----QMKFDVIIFNF 105 (214)
Q Consensus 93 ~-~-----~~~FD~IiFNF 105 (214)
+ . -..+|.||.|=
T Consensus 101 ~~~~~~~~~g~iD~vi~~A 119 (279)
T 1xg5_A 101 MFSAIRSQHSGVDICINNA 119 (279)
T ss_dssp HHHHHHHHHCCCSEEEECC
T ss_pred HHHHHHHhCCCCCEEEECC
Confidence 1 1 13689888774
No 384
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=26.48 E-value=1.2e+02 Score=27.04 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=47.3
Q ss_pred CCCCeEEEEecCchhHHH--HHHHHhCCCCcEEEeecCChHHHHhc-C-cc-HHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSD--CLARAFGSATNMVASSLDSERTLKTK-H-WT-SQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~--sLa~~~~~~~~l~ATs~ds~~~l~~k-Y-~~-a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
...++|++||-|.-..-. .|++ ++ ..|+.. +..+.+..+ . ++ +..-.+.|++.|+.++.+..++.+....
T Consensus 192 ~~~~~vvVIGgG~ig~E~A~~l~~-~g--~~Vtlv--~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~ 266 (490)
T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQR-KG--KEVVLI--DVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNG 266 (490)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHH-TT--CEEEEE--ESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECSS
T ss_pred cCCceEEEECCCHHHHHHHHHHHH-CC--CeEEEE--EcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcCC
Confidence 457899999988765543 3333 33 344433 322223221 1 12 2334567888999999997777665321
Q ss_pred CC-------CCCcccEEEEcC
Q 041136 92 TL-------SQMKFDVIIFNF 105 (214)
Q Consensus 92 ~~-------~~~~FD~IiFNF 105 (214)
.. ....+|.||+--
T Consensus 267 ~v~~v~~~g~~i~~D~Vi~a~ 287 (490)
T 2bc0_A 267 KVEKIITDKNEYDVDMVILAV 287 (490)
T ss_dssp SCCEEEESSCEEECSEEEECC
T ss_pred cEEEEEECCcEEECCEEEECC
Confidence 11 123578888753
No 385
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=26.43 E-value=22 Score=28.20 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.| -|..- .+|++.+. .+.+|++++.+... + ++..+.++..+....+.+|.++.+....+ .
T Consensus 5 ~~k~vlVtGasggiG--~~~a~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (251)
T 1zk4_A 5 DGKVAIITGGTLGIG--LAIATKFVEEGAKVMITGRHSDV-G-------EKAAKSVGTPDQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTCEEEETTTTSHHH--HHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCcEEEEeCCCChHH--HHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHhhccCceEEEECCCCCHHHHHHHHH
Confidence 357899998 44433 33544431 24678888876421 1 12233343323455667788765431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
-.++|.||.|=
T Consensus 75 ~~~~~~~~id~li~~A 90 (251)
T 1zk4_A 75 ATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HHHHHHSSCCEEEECC
T ss_pred HHHHHhCCCCEEEECC
Confidence 13589888874
No 386
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=26.43 E-value=1.7e+02 Score=24.74 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=11.5
Q ss_pred cccEEEEcCCCCCC
Q 041136 97 KFDVIIFNFPHAGH 110 (214)
Q Consensus 97 ~FD~IiFNFPH~G~ 110 (214)
.-|.|||-||-.=.
T Consensus 112 ~aD~iv~~~P~~w~ 125 (280)
T 4gi5_A 112 WADTVIFQFPLWWF 125 (280)
T ss_dssp HCSEEEEEEECBTT
T ss_pred hCCEEEEEeccccc
Confidence 36999999999854
No 387
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=26.19 E-value=1e+02 Score=24.88 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=45.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC-----
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT----- 92 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~----- 92 (214)
.++|++||-|.-..-.+. .+. .+..++...... .+ +.....++.|++.|+.++.+..++.+.....
T Consensus 154 ~~~v~vvG~g~~~~e~a~--~l~~~~~~v~~~~~~~--~~----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~ 225 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWAL--MLEPIAKEVSIIHRRD--KF----RAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLV 225 (332)
T ss_dssp TCEEEEECSSHHHHHHHH--HHTTTBSEEEEECSSS--SC----SSCHHHHHHHHHSSCEEETTEEEEEEECSSSCCEEE
T ss_pred CCEEEEECCCHhHHHHHH--HHHhhCCeEEEEEecC--cC----CccHHHHHHHhcCCeEEEeCceeeEEecCCceEEEE
Confidence 689999999987665333 221 123444433322 22 1223346778999999998876666654221
Q ss_pred C--------CCCcccEEEEcC
Q 041136 93 L--------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~--------~~~~FD~IiFNF 105 (214)
+ ....+|.||+--
T Consensus 226 ~~~~~~g~~~~~~~D~vv~a~ 246 (332)
T 3lzw_A 226 LEEVKGDRKEILEIDDLIVNY 246 (332)
T ss_dssp EEETTSCCEEEEECSEEEECC
T ss_pred EEecCCCceEEEECCEEEEee
Confidence 1 124578888843
No 388
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.16 E-value=99 Score=24.53 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=40.3
Q ss_pred CeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 20 QRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
.+|-+||=+|...... +...++ .+|..-++++++++. +-++.|++.|+.|+.|
T Consensus 95 ~kIavvg~~~~~~~~~~~~~ll~--~~i~~~~~~~~~e~~-------~~i~~l~~~G~~vvVG 148 (196)
T 2q5c_A 95 NELALIAYKHSIVDKHEIEAMLG--VKIKEFLFSSEDEIT-------TLISKVKTENIKIVVS 148 (196)
T ss_dssp SEEEEEEESSCSSCHHHHHHHHT--CEEEEEEECSGGGHH-------HHHHHHHHTTCCEEEE
T ss_pred CcEEEEeCcchhhHHHHHHHHhC--CceEEEEeCCHHHHH-------HHHHHHHHCCCeEEEC
Confidence 4899999777776544 555664 578888888877654 4689999999988877
No 389
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=26.16 E-value=36 Score=28.07 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=44.4
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.++++|+.|= |..= +++++.+. .+.+|++++.+.+. .++..++++..|. ...+.+|.++.+....+
T Consensus 31 ~gk~~lVTGas~GIG--~aia~~la~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 31 SGKRALITGASTGIG--KKVALAYAEAGAQVAVAARHSDA--------LQVVADEIAGVGGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp TTCEEEEESTTSHHH--HHHHHHHHHTTCEEEEEESSGGG--------GHHHHHHHHHTTCCCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH--HHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 4578999994 4333 33444431 24688888876431 2334556665553 45567888875542111
Q ss_pred C-----CCcccEEEEcC
Q 041136 94 S-----QMKFDVIIFNF 105 (214)
Q Consensus 94 ~-----~~~FD~IiFNF 105 (214)
. -.+.|.+|.|=
T Consensus 101 ~~~~~~~g~iD~lvnnA 117 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNA 117 (276)
T ss_dssp HHHHHHHSCCSEEEECC
T ss_pred HHHHHHcCCCCEEEECC
Confidence 1 13689998774
No 390
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=26.14 E-value=1.6e+02 Score=25.03 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc--ccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV--HTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA--t~L~~~- 90 (214)
....+++||++|-|..- ++..||+.+| ...|+||+.+.+ .++.++++|+...++.+. .++.+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPD------------KFEKAKVFGATDFVNPNDHSEPISQVL 255 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGG------------GHHHHHHTTCCEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHH------------HHHHHHHhCCceEEeccccchhHHHHH
Confidence 45678999999977653 4555677775 236888865432 234556678765544321 111110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC-CEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG-GEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~-G~i~VT 149 (214)
.......+|.||=. +|.. ..+..+.++|+++ |++.+.
T Consensus 256 ~~~~~~g~D~vid~---~g~~-------------------~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 256 SKMTNGGVDFSLEC---VGNV-------------------GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHTSCBSEEEEC---SCCH-------------------HHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEEC---CCCH-------------------HHHHHHHHHhhcCCcEEEEE
Confidence 00112368988743 3320 1245577889999 987543
No 391
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=26.09 E-value=1.1e+02 Score=26.04 Aligned_cols=96 Identities=11% Similarity=0.176 Sum_probs=53.6
Q ss_pred CeEEEEecCchhH-H-HHHH-HHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVGEGDFSF-S-DCLA-RAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeGnFSF-S-~sLa-~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++||++|=|..-- + ..|| +.+| ..+|+||+.+.+.. ..++.++++|+... +.+..++.+-..+ ..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~~~~~---------~~~~~~~~lGa~~v-~~~~~~~~~i~~~-~g 241 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRRDRPD---------PTIDIIEELDATYV-DSRQTPVEDVPDV-YE 241 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECCCSSC---------HHHHHHHHTTCEEE-ETTTSCGGGHHHH-SC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCCcccH---------HHHHHHHHcCCccc-CCCccCHHHHHHh-CC
Confidence 8999999877654 4 4567 6665 23499998754310 02345667888655 4332222110011 12
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+|.||=. +|.. ..+..+..+|+++|++.+.
T Consensus 242 g~Dvvid~---~g~~-------------------~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYEA---TGFP-------------------KHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEEC---SCCH-------------------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEC---CCCh-------------------HHHHHHHHHHhcCCEEEEE
Confidence 68887642 3320 0234566788999987543
No 392
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=26.03 E-value=1.6e+02 Score=25.21 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred ccccccCCCCCCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC-EEEEEecCC
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG-EVHVTLRDD 153 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G-~i~VTl~~~ 153 (214)
++|.+.+. ..++|.|+.+- |-.|.. ..|+ ..-+. -+.=|.+.|+++| .+.|-+.++
T Consensus 129 G~Df~~~~------~~~~DvVLSDMAPnSG~~--~vD~--------~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 129 GVDVFYKP------SEISDTLLCDIGESSPSA--EIEE--------QRTLR-ILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp SCCGGGSC------CCCCSEEEECCCCCCSCH--HHHH--------HHHHH-HHHHHHHHHTTCCSEEEEEESCT
T ss_pred cCCccCCC------CCCCCEEEeCCCCCCCcc--HHHH--------HHHHH-HHHHHHHHhhcCCcEEEEEECCC
Confidence 78998754 46799999987 432221 1111 11222 3344678999999 888887774
No 393
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.97 E-value=50 Score=26.79 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL- 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~- 93 (214)
.+++||+.| -|.. -++||+.+ ..+.+|++++.+..+.+. ...+.++..|. ...+.+|.++......+
T Consensus 28 ~~k~vlITGas~gI--G~~la~~l~~~G~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 98 (271)
T 4iin_A 28 TGKNVLITGASKGI--GAEIAKTLASMGLKVWINYRSNAEVAD-------ALKNELEEKGYKAAVIKFDAASESDFIEAI 98 (271)
T ss_dssp SCCEEEETTCSSHH--HHHHHHHHHHTTCEEEEEESSCHHHHH-------HHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHH--HHHHHHHHHHCCCEEEEEeCCCHHHHH-------HHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 457899998 4433 33355443 124689998886654322 23445555554 45677888875432111
Q ss_pred -----CCCcccEEEEcC
Q 041136 94 -----SQMKFDVIIFNF 105 (214)
Q Consensus 94 -----~~~~FD~IiFNF 105 (214)
...+.|.+|.|=
T Consensus 99 ~~~~~~~g~id~li~nA 115 (271)
T 4iin_A 99 QTIVQSDGGLSYLVNNA 115 (271)
T ss_dssp HHHHHHHSSCCEEEECC
T ss_pred HHHHHhcCCCCEEEECC
Confidence 113689988874
No 394
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=25.77 E-value=45 Score=28.17 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred CCCCCCeEEEEecC-ch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--
Q 041136 15 HYTNNQRILLVGEG-DF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeG-nF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-- 90 (214)
....+++||++|-| .. ..+..|++..| .++++|+.+.+. ++.++++|+...++.+..++.+.
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~------------~~~~~~lga~~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKH------------TEELLRLGAAYVIDTSTAPLYETVM 206 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTT------------HHHHHHHTCSEEEETTTSCHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHH------------HHHHHhCCCcEEEeCCcccHHHHHH
Confidence 45678999999976 44 34455677776 489998765431 33444457765544332221110
Q ss_pred CCCCCCcccEEEE
Q 041136 91 PTLSQMKFDVIIF 103 (214)
Q Consensus 91 ~~~~~~~FD~IiF 103 (214)
....+..+|.||-
T Consensus 207 ~~~~~~g~Dvvid 219 (340)
T 3gms_A 207 ELTNGIGADAAID 219 (340)
T ss_dssp HHTTTSCEEEEEE
T ss_pred HHhCCCCCcEEEE
Confidence 0012346887765
No 395
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=25.73 E-value=1.5e+02 Score=24.61 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=44.0
Q ss_pred CCCCCCeEEEEecCch-hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--C
Q 041136 15 HYTNNQRILLVGEGDF-SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--P 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnF-SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~ 91 (214)
....+++||++|-|.. .++..++++.+ +.+|+||+...+ .++.+++.|+...++-...+..+. .
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~------------r~~~~~~~Ga~~~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQD------------KLNLAKKIGADVTINSGDVNPVDEIKK 226 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHH------------HHHHHHHTTCSEEEEC-CCCHHHHHHH
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHH------------HhhhhhhcCCeEEEeCCCCCHHHHhhh
Confidence 3467899999998765 45556677664 468998865432 244566677765544322221110 0
Q ss_pred CCCCCcccEEEEc
Q 041136 92 TLSQMKFDVIIFN 104 (214)
Q Consensus 92 ~~~~~~FD~IiFN 104 (214)
...+..+|.++..
T Consensus 227 ~t~g~g~d~~~~~ 239 (348)
T 4eez_A 227 ITGGLGVQSAIVC 239 (348)
T ss_dssp HTTSSCEEEEEEC
T ss_pred hcCCCCceEEEEe
Confidence 0124457777764
No 396
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=25.60 E-value=60 Score=26.26 Aligned_cols=36 Identities=28% Similarity=0.553 Sum_probs=22.5
Q ss_pred CCCeEEEEe---cCchhHHHHHHHHhC-CCCcEEEeecCChH
Q 041136 18 NNQRILLVG---EGDFSFSDCLARAFG-SATNMVASSLDSER 55 (214)
Q Consensus 18 ~~~~ILlVG---eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~ 55 (214)
.++++|+.| -|..=. ++++.+. .+.+|++++.+.+.
T Consensus 6 ~~k~vlVTGa~~s~gIG~--aia~~l~~~G~~V~~~~r~~~~ 45 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAF--HIARVAQEQGAQLVLTGFDRLR 45 (269)
T ss_dssp TTCEEEECCCSSTTSHHH--HHHHHHHHTTCEEEEEECSCHH
T ss_pred CCCEEEEECCCCCCchHH--HHHHHHHHCCCEEEEEecChHH
Confidence 357899999 455433 3544431 24689998887643
No 397
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=25.56 E-value=2.1e+02 Score=26.10 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCCCC--CeEEEEe-cCchhHHHHHHHHhC--CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCC
Q 041136 15 HYTNN--QRILLVG-EGDFSFSDCLARAFG--SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMD 88 (214)
Q Consensus 15 ~~~~~--~~ILlVG-eGnFSFS~sLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~ 88 (214)
++... +++|+.| -|..= +++++.+- ...+|+.++....+. +.+.+.+++|+..|..| .+.+|+++..
T Consensus 233 ~~~~~~~~~vLITGgsgGIG--~alA~~La~~Ga~~vvl~~R~~~~~-----~~~~~l~~~l~~~g~~v~~~~~Dvtd~~ 305 (496)
T 3mje_A 233 GKRPPVHGSVLVTGGTGGIG--GRVARRLAEQGAAHLVLTSRRGADA-----PGAAELRAELEQLGVRVTIAACDAADRE 305 (496)
T ss_dssp TCCCCCCSEEEEETCSSHHH--HHHHHHHHHTTCSEEEEEESSGGGS-----TTHHHHHHHHHHTTCEEEEEECCTTCHH
T ss_pred CCCCCCCCEEEEECCCCchH--HHHHHHHHHCCCcEEEEEeCCCCCh-----HHHHHHHHHHHhcCCeEEEEEccCCCHH
Confidence 34555 8899998 44433 33444431 233788888754321 24556678888888755 5678888744
Q ss_pred CCCC----C-CCCcccEEEEcC
Q 041136 89 RHPT----L-SQMKFDVIIFNF 105 (214)
Q Consensus 89 ~~~~----~-~~~~FD~IiFNF 105 (214)
.... . ...+.|.||.|=
T Consensus 306 ~v~~~~~~i~~~g~ld~vVh~A 327 (496)
T 3mje_A 306 ALAALLAELPEDAPLTAVFHSA 327 (496)
T ss_dssp HHHHHHHTCCTTSCEEEEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEECC
Confidence 3100 1 124689888764
No 398
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=25.54 E-value=30 Score=29.22 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CEEEEccccccCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~Vl~~VDAt~L~~~~~~ 93 (214)
.+++||+.|=+.+ ..++|++.+ ..+.+|++++.+... .++..+.|+..| ....+.+|.++......+
T Consensus 7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~ 77 (319)
T 3ioy_A 7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDS--------IDKALATLEAEGSGPEVMGVQLDVASREGFKMA 77 (319)
T ss_dssp TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHH--------HHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHH
Confidence 3578999994322 234455554 234689999887532 223344555444 356677898875432111
Q ss_pred ------CCCcccEEEEcC
Q 041136 94 ------SQMKFDVIIFNF 105 (214)
Q Consensus 94 ------~~~~FD~IiFNF 105 (214)
.....|.||.|=
T Consensus 78 ~~~~~~~~g~id~lv~nA 95 (319)
T 3ioy_A 78 ADEVEARFGPVSILCNNA 95 (319)
T ss_dssp HHHHHHHTCCEEEEEECC
T ss_pred HHHHHHhCCCCCEEEECC
Confidence 124679888774
No 399
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=25.28 E-value=34 Score=28.74 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=45.7
Q ss_pred CCCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHH-H-HhcCccHHHHHHHHHhCCCE-EEEccccccCCCCC
Q 041136 17 TNNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERT-L-KTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~-l-~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~ 91 (214)
-.++++|+.| -|..=. ++|+.+ ..+.+|+++..+.... . ...-...++..++++..|.. ..+.+|.++.....
T Consensus 25 l~gk~vlVTGas~GIG~--aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 25 VDGRVVIVTGAGGGIGR--AHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp TTTCEEEETTTTSHHHH--HHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred cCCCEEEEECCCcHHHH--HHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 3567899998 343333 344443 1246888887652000 0 00011244556777776654 45677888754321
Q ss_pred CC-C-----CCcccEEEEcC
Q 041136 92 TL-S-----QMKFDVIIFNF 105 (214)
Q Consensus 92 ~~-~-----~~~FD~IiFNF 105 (214)
.+ . -.+.|.+|.|=
T Consensus 103 ~~~~~~~~~~g~iD~lv~nA 122 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNA 122 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 11 0 13689887763
No 400
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=25.26 E-value=1.6e+02 Score=26.18 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=40.7
Q ss_pred CCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 17 TNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
...++|++||-|+-..-.|. +..++ ..+|+.....+..++ |....-++.+++.|+.++++...+.+.
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~G-a~~Vtiv~r~~~~~~----p~~~~e~~~~~~~Gv~~~~~~~~~~i~ 329 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQG-ATSVKCLYRRDRKNM----PGSQREVAHAEEEGVEFIWQAAPEGFT 329 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTT-CSEEEEECSSCSTTC----SSCHHHHHHHHHTTCEEECCSSSCCEE
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcC-CCEEEEEEeCCccCC----CCCHHHHHHHHHCCCEEEeCCCceEEe
Confidence 45789999999987665443 22333 224554444332211 222233677888999999887766553
No 401
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Probab=25.19 E-value=27 Score=26.66 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=40.8
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC--Cc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ--MK 97 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~--~~ 97 (214)
++||+.|=+.+ ...+|++.+... +|++++.+.. .+ .+..+.+. . ..+.+|.++......+-. ..
T Consensus 1 k~vlVtGasg~-iG~~la~~l~~~-~V~~~~r~~~-~~-------~~~~~~~~---~-~~~~~D~~~~~~~~~~~~~~~~ 66 (207)
T 2yut_A 1 MRVLITGATGG-LGGAFARALKGH-DLLLSGRRAG-AL-------AELAREVG---A-RALPADLADELEAKALLEEAGP 66 (207)
T ss_dssp CEEEEETTTSH-HHHHHHHHTTTS-EEEEECSCHH-HH-------HHHHHHHT---C-EECCCCTTSHHHHHHHHHHHCS
T ss_pred CEEEEEcCCcH-HHHHHHHHHHhC-CEEEEECCHH-HH-------HHHHHhcc---C-cEEEeeCCCHHHHHHHHHhcCC
Confidence 46899984332 345688887655 8888877532 11 11122232 2 667788886543211111 26
Q ss_pred ccEEEEcCC
Q 041136 98 FDVIIFNFP 106 (214)
Q Consensus 98 FD~IiFNFP 106 (214)
.|.||.|=-
T Consensus 67 id~vi~~ag 75 (207)
T 2yut_A 67 LDLLVHAVG 75 (207)
T ss_dssp EEEEEECCC
T ss_pred CCEEEECCC
Confidence 898887743
No 402
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=24.85 E-value=71 Score=28.36 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=41.2
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
+.+.=|++.+.. ..+||.||.+. |-+-+ ..++.+.+ -..|...-+.=|.+.|++||.+.|-+++|.-
T Consensus 155 ~~IqGD~~~~~~-----~~k~DLVISDMAPNtTG---~~D~d~~R---s~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 155 STLIGDCATVHT-----ANKWDLIISDMYDPRTK---HVTKENDS---KEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EEEESCGGGEEE-----SSCEEEEEECCCCTTSC---SSCSCCCC---CCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred eEEEcccccccc-----CCCCCEEEecCCCCcCC---ccccchhH---HHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 445556554332 47899999985 44422 22322100 1224444455589999999999999999873
No 403
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.40 E-value=32 Score=31.62 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEecCchhHHHHH--HHHhCCCCcEEEeecC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCL--ARAFGSATNMVASSLD 52 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sL--a~~~~~~~~l~ATs~d 52 (214)
++-.++|+++.||++..++++- .+.+| ..+++++..
T Consensus 299 ~~l~Gkrv~i~gd~~~~~~l~~~L~~elG--m~vv~~gt~ 336 (511)
T 2xdq_B 299 QNLTGKKAVVFGDNTHAAAMTKILSREMG--IHVVWAGTY 336 (511)
T ss_dssp HTTTTCEEEEEECHHHHHHHHHHHHHHHC--CEEEEEEES
T ss_pred HhccCCEEEEEcCChHHHHHHHHHHHhCC--CEEEEeecC
Confidence 5667899999999998777442 24555 456665443
No 404
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.22 E-value=2.6e+02 Score=23.04 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=45.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++.+|+-|=+ =-.-+++|+.+. .+.+|+.+..+.+ . .++..++|++.|.. ..+.+|+++-+....+
T Consensus 8 ~gKvalVTGas-~GIG~aia~~la~~Ga~Vvi~~~~~~-~-------~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~ 78 (255)
T 4g81_D 8 TGKTALVTGSA-RGLGFAYAEGLAAAGARVILNDIRAT-L-------LAESVDTLTRKGYDAHGVAFDVTDELAIEAAFS 78 (255)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEECCSCHH-H-------HHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHH-H-------HHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 45667777722 122333444431 3568988877543 2 33456778777754 4567888875432111
Q ss_pred ----CCCcccEEEEcC
Q 041136 94 ----SQMKFDVIIFNF 105 (214)
Q Consensus 94 ----~~~~FD~IiFNF 105 (214)
.-.+.|.+|-|=
T Consensus 79 ~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 79 KLDAEGIHVDILINNA 94 (255)
T ss_dssp HHHHTTCCCCEEEECC
T ss_pred HHHHHCCCCcEEEECC
Confidence 235689998884
No 405
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=24.18 E-value=1.9e+02 Score=22.46 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=41.8
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CE-EEEccccccCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CL-VLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~-Vl~~VDAt~L~~~~ 91 (214)
.++++|+.| -|..= .++++.+. .+.+|++++.+... .++..++++..+ +. +..++|.++.....
T Consensus 13 ~~k~vlITGas~gIG--~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~ 82 (247)
T 3i1j_A 13 KGRVILVTGAARGIG--AAAARAYAAHGASVVLLGRTEAS--------LAEVSDQIKSAGQPQPLIIALNLENATAQQYR 82 (247)
T ss_dssp TTCEEEESSTTSHHH--HHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTSCCCEEEECCTTTCCHHHHH
T ss_pred CCCEEEEeCCCChHH--HHHHHHHHHCCCEEEEEecCHHH--------HHHHHHHHHhcCCCCceEEEeccccCCHHHHH
Confidence 467899999 44333 33444431 24688888876432 223345555543 22 23344446543311
Q ss_pred CC------CCCcccEEEEcCCCC
Q 041136 92 TL------SQMKFDVIIFNFPHA 108 (214)
Q Consensus 92 ~~------~~~~FD~IiFNFPH~ 108 (214)
.+ ...+.|.+|.|=-..
T Consensus 83 ~~~~~~~~~~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 83 ELAARVEHEFGRLDGLLHNASII 105 (247)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHhCCCCCEEEECCccC
Confidence 11 013689999885443
No 406
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=24.16 E-value=1.3e+02 Score=25.53 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCeEEEEecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC--C
Q 041136 19 NQRILLVGEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS--Q 95 (214)
Q Consensus 19 ~~~ILlVGeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~--~ 95 (214)
+++||++|=|..-- +..+++..| .+|++|+.+... .+.++.++++|+... + +. ++.+ .+. .
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~---------~~~~~~~~~~ga~~v-~-~~-~~~~--~~~~~~ 244 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPT---------EVEQTVIEETKTNYY-N-SS-NGYD--KLKDSV 244 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCC---------HHHHHHHHHHTCEEE-E-CT-TCSH--HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccc---------hHHHHHHHHhCCcee-c-hH-HHHH--HHHHhC
Confidence 78999999776544 444567775 389999875410 112344556687655 3 21 2111 011 1
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHH-HHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFL-KNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff-~Sa~~lL~~~G~i~VT 149 (214)
..+|.||-+- |... .+ +.+..+|+++|+|.+.
T Consensus 245 ~~~d~vid~~---g~~~-------------------~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 245 GKFDVIIDAT---GADV-------------------NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CCEEEEEECC---CCCT-------------------HHHHHHGGGEEEEEEEEEC
T ss_pred CCCCEEEECC---CChH-------------------HHHHHHHHHHhcCCEEEEE
Confidence 4689887653 3210 12 5567788999987543
No 407
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=24.15 E-value=1.2e+02 Score=24.54 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=41.9
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEccccccCCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDAt~L~~~~~~ 93 (214)
.+++||+.|= |.. -++|++.+ ..+.+|++++.+.+. + ++..+.+++.|. ...+.+|.++......+
T Consensus 27 ~~k~vlITGasggI--G~~la~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 96 (286)
T 1xu9_A 27 QGKKVIVTGASKGI--GREMAYHLAKMGAHVVVTARSKET-L-------QKVVSHCLELGAASAHYIAGTMEDMTFAEQF 96 (286)
T ss_dssp TTCEEEESSCSSHH--HHHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHHHHHHTCSEEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCcHH--HHHHHHHHHHCCCEEEEEECCHHH-H-------HHHHHHHHHhCCCceEEEeCCCCCHHHHHHH
Confidence 4678999994 433 33344443 124689998876432 2 122334444343 44567788864431111
Q ss_pred -C-----CCcccEEEEc
Q 041136 94 -S-----QMKFDVIIFN 104 (214)
Q Consensus 94 -~-----~~~FD~IiFN 104 (214)
. ....|.||.|
T Consensus 97 ~~~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 97 VAQAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHcCCCCEEEEC
Confidence 1 1368999988
No 408
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=24.13 E-value=43 Score=27.43 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=42.0
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHh-----CC-CEEEEccccccCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWS-----RG-CLVLHGVNVHTMDR 89 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-----~g-~~Vl~~VDAt~L~~ 89 (214)
.+++||+.|= |.. ..+|++.+. .+.+|++++.+.. .+ .+..++|+. .+ -...+.+|.++...
T Consensus 17 ~~k~vlVTGasggI--G~~la~~l~~~G~~V~~~~r~~~-~~-------~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~ 86 (303)
T 1yxm_A 17 QGQVAIVTGGATGI--GKAIVKELLELGSNVVIASRKLE-RL-------KSAADELQANLPPTKQARVIPIQCNIRNEEE 86 (303)
T ss_dssp TTCEEEEETTTSHH--HHHHHHHHHHTTCEEEEEESCHH-HH-------HHHHHHHHHTSCTTCCCCEEEEECCTTCHHH
T ss_pred CCCEEEEECCCcHH--HHHHHHHHHHCCCEEEEEeCCHH-HH-------HHHHHHHHhhccccCCccEEEEecCCCCHHH
Confidence 3578999993 433 333544431 2467888877642 21 222344443 23 34567788886543
Q ss_pred CCCC-C-----CCcccEEEEcC
Q 041136 90 HPTL-S-----QMKFDVIIFNF 105 (214)
Q Consensus 90 ~~~~-~-----~~~FD~IiFNF 105 (214)
...+ . -.+.|.||.|=
T Consensus 87 v~~~~~~~~~~~g~id~li~~A 108 (303)
T 1yxm_A 87 VNNLVKSTLDTFGKINFLVNNG 108 (303)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 2111 1 13589888774
No 409
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.11 E-value=29 Score=28.20 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~ 93 (214)
.++++|+.| -|..= +++|+.+ ..+.+|++++.+.+. .++..++|+..| ....+.+|.++.+....+
T Consensus 9 ~~k~vlVTGas~gIG--~aia~~l~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~ 78 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIG--RGIATVFARAGANVAVAGRSTAD--------IDACVADLDQLGSGKVIGVQTDVSDRAQCDAL 78 (262)
T ss_dssp TTCEEEETTCSSHHH--HHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHTTSSSCEEEEECCTTSHHHHHHH
T ss_pred CCCEEEEECCCcHHH--HHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHH
Confidence 457888888 44333 3344443 124588888876432 233456666654 456678898875542111
Q ss_pred ------CCCcccEEEEcC
Q 041136 94 ------SQMKFDVIIFNF 105 (214)
Q Consensus 94 ------~~~~FD~IiFNF 105 (214)
.-.+.|.+|.|=
T Consensus 79 ~~~~~~~~g~id~lvnnA 96 (262)
T 3pk0_A 79 AGRAVEEFGGIDVVCANA 96 (262)
T ss_dssp HHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 013689988773
No 410
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=23.95 E-value=1.8e+02 Score=25.44 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=40.1
Q ss_pred CeEEEEecCchhHHHHHHHHhC-CC---CcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCC-
Q 041136 20 QRILLVGEGDFSFSDCLARAFG-SA---TNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPT- 92 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~-~~---~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~- 92 (214)
++||++|=|. ...++++.+. .+ ..|++.+.+.+. +++..+.+...+ ......+|+++......
T Consensus 2 ~kVlIiGaGg--iG~~ia~~L~~~g~~~~~V~v~~r~~~~--------~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~ 71 (405)
T 4ina_A 2 AKVLQIGAGG--VGGVVAHKMAMNREVFSHITLASRTLSK--------CQEIAQSIKAKGYGEIDITTVDADSIEELVAL 71 (405)
T ss_dssp CEEEEECCSH--HHHHHHHHHHTCTTTCCEEEEEESCHHH--------HHHHHHHHHHTTCCCCEEEECCTTCHHHHHHH
T ss_pred CEEEEECCCH--HHHHHHHHHHhCCCCceEEEEEECCHHH--------HHHHHHHhhhhcCCceEEEEecCCCHHHHHHH
Confidence 4899999885 4455666542 12 267777665432 222234444322 22344567765322111
Q ss_pred CCCCcccEEEEcCC
Q 041136 93 LSQMKFDVIIFNFP 106 (214)
Q Consensus 93 ~~~~~FD~IiFNFP 106 (214)
+.....|.||.+=|
T Consensus 72 l~~~~~DvVin~ag 85 (405)
T 4ina_A 72 INEVKPQIVLNIAL 85 (405)
T ss_dssp HHHHCCSEEEECSC
T ss_pred HHhhCCCEEEECCC
Confidence 12224798888754
No 411
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=23.73 E-value=2e+02 Score=22.83 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-C-CEEEEcccc--ccCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-G-CLVLHGVNV--HTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g-~~Vl~~VDA--t~L~~~~ 91 (214)
.++++|+.|= |..= +++|+.+ ..+.+|++++.+.+. + .+..+.++.. + ....+.+|. ++.....
T Consensus 11 ~~k~vlVTGas~gIG--~aia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 80 (252)
T 3f1l_A 11 NDRIILVTGASDGIG--REAAMTYARYGATVILLGRNEEK-L-------RQVASHINEETGRQPQWFILDLLTCTSENCQ 80 (252)
T ss_dssp TTCEEEEESTTSHHH--HHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHHHHHHHSCCCEEEECCTTTCCHHHHH
T ss_pred CCCEEEEeCCCChHH--HHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHHHhhcCCCceEEEEecccCCHHHHH
Confidence 4678999993 3332 3344443 124688888876432 2 2223334332 2 334455666 5543211
Q ss_pred CC------CCCcccEEEEcC
Q 041136 92 TL------SQMKFDVIIFNF 105 (214)
Q Consensus 92 ~~------~~~~FD~IiFNF 105 (214)
.+ ...+.|.+|.|=
T Consensus 81 ~~~~~~~~~~g~id~lv~nA 100 (252)
T 3f1l_A 81 QLAQRIAVNYPRLDGVLHNA 100 (252)
T ss_dssp HHHHHHHHHCSCCSEEEECC
T ss_pred HHHHHHHHhCCCCCEEEECC
Confidence 11 124689998874
No 412
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=23.70 E-value=56 Score=27.00 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCCCeEEEEec-Cchh-HHHHHHHHhCCCCcEEEeecCC
Q 041136 16 YTNNQRILLVGE-GDFS-FSDCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 16 ~~~~~~ILlVGe-GnFS-FS~sLa~~~~~~~~l~ATs~ds 53 (214)
...+++||++|= |..- .+..+|+..| .++++|+.+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~ 160 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRP 160 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 467899999996 7664 3455677775 4899988643
No 413
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=23.47 E-value=1.6e+02 Score=24.88 Aligned_cols=100 Identities=20% Similarity=0.280 Sum_probs=56.1
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccc---cccCCCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVN---VHTMDRH 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VD---At~L~~~ 90 (214)
....+++||++|-|..- ++..||+.+| ...|++|..+.+ .++.++++|+...++.+ ..++.+.
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~~~~ 234 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSAT------------RLSKAKEIGADLVLQISKESPQEIARK 234 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHH------------HHHHHHHTTCSEEEECSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHH------------HHHHHHHhCCCEEEcCcccccchHHHH
Confidence 35678999999977643 4556677775 337888865432 24456677876444432 1111000
Q ss_pred -CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 -PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 -~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.......+|.||=. +|.. . .+..+.++|+++|++.+.
T Consensus 235 i~~~~~~g~D~vid~---~g~~---------------~----~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 235 VEGQLGCKPEVTIEC---TGAE---------------A----SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHTSCCSEEEEC---SCCH---------------H----HHHHHHHHSCTTCEEEEC
T ss_pred HHHHhCCCCCEEEEC---CCCh---------------H----HHHHHHHHhcCCCEEEEE
Confidence 00111468988743 3321 0 134466789999998543
No 414
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=23.42 E-value=61 Score=27.46 Aligned_cols=94 Identities=12% Similarity=0.247 Sum_probs=53.6
Q ss_pred CCCeEEEE-ecCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC-CCCCC
Q 041136 18 NNQRILLV-GEGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR-HPTLS 94 (214)
Q Consensus 18 ~~~~ILlV-GeGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~-~~~~~ 94 (214)
.+++||++ |-|..-- +..||+..| .++++|+.+.+ +++.++++|+...++.+. ++.+ -....
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~------------~~~~~~~lGa~~vi~~~~-~~~~~~~~~~ 214 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE------------TIEWTKKMGADIVLNHKE-SLLNQFKTQG 214 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH------------HHHHHHHHTCSEEECTTS-CHHHHHHHHT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH------------HHHHHHhcCCcEEEECCc-cHHHHHHHhC
Confidence 68899999 5887754 445577765 48999865322 345556667765544321 1100 00123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
...+|.|+=+ +|. . ..+..+..+|+++|++..
T Consensus 215 ~~g~Dvv~d~---~g~---------------~----~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 215 IELVDYVFCT---FNT---------------D----MYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp CCCEEEEEES---SCH---------------H----HHHHHHHHHEEEEEEEEE
T ss_pred CCCccEEEEC---CCc---------------h----HHHHHHHHHhccCCEEEE
Confidence 3568866542 332 0 134456678899998843
No 415
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=23.18 E-value=80 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=23.0
Q ss_pred CCCeEEEEecCchhHH-----HHHHHHhCCCCcEEEeecCC
Q 041136 18 NNQRILLVGEGDFSFS-----DCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS-----~sLa~~~~~~~~l~ATs~ds 53 (214)
+...|+++|||.|+.. +.+|..++. .|+.-+.+.
T Consensus 166 ~~~vv~i~GDGa~~~G~~~Eal~~A~~~~l--pvi~vv~NN 204 (367)
T 1umd_A 166 GQVAVCTFGDGATSEGDWYAGINFAAVQGA--PAVFIAENN 204 (367)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTC--SEEEEEEEC
T ss_pred CCeEEEEEcccccccCcHHHHHHHHHHhCc--CEEEEEecC
Confidence 4566889999998876 556666654 366666554
No 416
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=22.81 E-value=2.7e+02 Score=25.28 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCCCCCeEEEEe-cCchhHHHHHHHHhC-CCC-cEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCC
Q 041136 15 HYTNNQRILLVG-EGDFSFSDCLARAFG-SAT-NMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRH 90 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSFS~sLa~~~~-~~~-~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~ 90 (214)
++..+++||+.| -|..-.. |++++. .+. +|+.++....+ -+...+.+++|+..|..| ++.+|+++....
T Consensus 255 ~~~~~~~vLITGgtGgIG~~--lA~~La~~G~~~vvl~~R~~~~-----~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v 327 (511)
T 2z5l_A 255 SWQPSGTVLITGGMGAIGRR--LARRLAAEGAERLVLTSRRGPE-----APGAAELAEELRGHGCEVVHAACDVAERDAL 327 (511)
T ss_dssp CCCCCSEEEEETTTSHHHHH--HHHHHHHTTCSEEEEEESSGGG-----STTHHHHHHHHHTTTCEEEEEECCSSCHHHH
T ss_pred CcCCCCEEEEECCCCHHHHH--HHHHHHhCCCcEEEEEecCCcc-----cHHHHHHHHHHHhcCCEEEEEEeCCCCHHHH
Confidence 578889999999 4544333 444431 123 68888876432 123455677888888755 456888875431
Q ss_pred CC-CCCCcccEEEEcC
Q 041136 91 PT-LSQMKFDVIIFNF 105 (214)
Q Consensus 91 ~~-~~~~~FD~IiFNF 105 (214)
.. +...+.|.||.|=
T Consensus 328 ~~~~~~~~ld~VVh~A 343 (511)
T 2z5l_A 328 AALVTAYPPNAVFHTA 343 (511)
T ss_dssp HHHHHHSCCSEEEECC
T ss_pred HHHHhcCCCcEEEECC
Confidence 11 1225689888764
No 417
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=22.65 E-value=2.4e+02 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=23.9
Q ss_pred CCCCeEEEEec-Cch-hHHHHHHHHhCCCCcEEEee
Q 041136 17 TNNQRILLVGE-GDF-SFSDCLARAFGSATNMVASS 50 (214)
Q Consensus 17 ~~~~~ILlVGe-GnF-SFS~sLa~~~~~~~~l~ATs 50 (214)
..+++||++|- |.. +.+..||+..| ..+++|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~ 196 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC 196 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe
Confidence 67899999997 655 34556678775 4788887
No 418
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=22.45 E-value=56 Score=26.76 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.| -|.. -+++++.+. .+.+|++++.+.+. .++..++|+..|....+.+|.++.+....+ .
T Consensus 28 ~~k~vlVTGas~gI--G~aia~~L~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 28 AGRIALVTGGSRGI--GQMIAQGLLEAGARVFICARDAEA--------CADTATRLSAYGDCQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp TTCEEEEETTTSHH--HHHHHHHHHHTTCEEEEECSCHHH--------HHHHHHHHTTSSCEEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCChH--HHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCceEEEEeeCCCHHHHHHHHH
Confidence 467899998 4433 333544431 24678888775421 223345565555455667888865431111 0
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
-.+.|.||.|=
T Consensus 98 ~~~~~~g~iD~lvnnA 113 (276)
T 2b4q_A 98 ALGELSARLDILVNNA 113 (276)
T ss_dssp HHHHHCSCCSEEEECC
T ss_pred HHHHhcCCCCEEEECC
Confidence 13689988774
No 419
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.22 E-value=67 Score=25.39 Aligned_cols=79 Identities=11% Similarity=0.206 Sum_probs=43.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.|=+.+ ...+|++.+. .+.+|++++.+... ..+..+.|+..|. ...+.+|.++......+ .
T Consensus 12 ~~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~--------~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 12 DNRVAIVTGGAQN-IGLACVTALAEAGARVIIADLDEAM--------ATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHH--------HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHH--------HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 4678999984332 2333554431 24689988876421 2233455655554 44567788865431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
....|.||.|=
T Consensus 83 ~~~~~~~~id~vi~~A 98 (260)
T 3awd_A 83 SVHEQEGRVDILVACA 98 (260)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 13689988774
No 420
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=22.14 E-value=1.5e+02 Score=23.87 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCCeEEEEec-CchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.++++|+.|= |..- +++++.+. .+.+|++++.+.+. + ++..+++. +-...+.+|.++.+....+ .
T Consensus 5 ~~k~vlITGas~gIG--~aia~~l~~~G~~V~~~~r~~~~-~-------~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~ 72 (263)
T 2a4k_A 5 SGKTILVTGAASGIG--RAALDLFAREGASLVAVDREERL-L-------AEAVAALE--AEAIAVVADVSDPKAVEAVFA 72 (263)
T ss_dssp TTCEEEEESTTSHHH--HHHHHHHHHTTCEEEEEESCHHH-H-------HHHHHTCC--SSEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHH--HHHHHHHHHCCCEEEEEeCCHHH-H-------HHHHHHhc--CceEEEEcCCCCHHHHHHHHH
Confidence 3578999983 4333 33444431 24688888776421 1 11122222 3345667888865431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
-.+.|.+|.|=
T Consensus 73 ~~~~~~g~iD~lvnnA 88 (263)
T 2a4k_A 73 EALEEFGRLHGVAHFA 88 (263)
T ss_dssp HHHHHHSCCCEEEEGG
T ss_pred HHHHHcCCCcEEEECC
Confidence 13579998873
No 421
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=22.05 E-value=1.2e+02 Score=27.61 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCCCCCeEEEEecCchhHH-HHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFS-DCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS-~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.|-..++|.+||=|.=.-| +|. ....| ..| |+.|..+ ++. ..+.|++.|+.|..|-++.++.
T Consensus 15 ~~~~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V--~~sD~~~-----~~~---~~~~L~~~gi~~~~G~~~~~~~---- 78 (524)
T 3hn7_A 15 LYFQGMHIHILGICGTFMGSLALLARALG--HTV--TGSDANI-----YPP---MSTQLEQAGVTIEEGYLIAHLQ---- 78 (524)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT--CEE--EEEESCC-----CTT---HHHHHHHTTCEEEESCCGGGGC----
T ss_pred eeecCCEEEEEEecHhhHHHHHHHHHhCC--CEE--EEECCCC-----CcH---HHHHHHHCCCEEECCCCHHHcC----
Confidence 3667789999999987765 122 33343 344 4455432 222 3567888999999987766552
Q ss_pred CCCCcccEEEEc
Q 041136 93 LSQMKFDVIIFN 104 (214)
Q Consensus 93 ~~~~~FD~IiFN 104 (214)
..+|.||..
T Consensus 79 ---~~~d~vV~S 87 (524)
T 3hn7_A 79 ---PAPDLVVVG 87 (524)
T ss_dssp ---SCCSEEEEC
T ss_pred ---CCCCEEEEC
Confidence 237888875
No 422
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=22.05 E-value=15 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.7
Q ss_pred CCcccEEEEcCCCCC
Q 041136 95 QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G 109 (214)
..+||.||-|.|.-+
T Consensus 300 ~~~fD~Il~NPPf~~ 314 (530)
T 3ufb_A 300 KDRVDVILTNPPFGG 314 (530)
T ss_dssp GGCBSEEEECCCSSC
T ss_pred cccceEEEecCCCCc
Confidence 457999999999854
No 423
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=21.95 E-value=1.7e+02 Score=24.54 Aligned_cols=99 Identities=18% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCC-C
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRH-P 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~-~ 91 (214)
....+++||++|-|..- ++..||+.+| ..|++|..+.+ .++.++++|+...++.+- .++.+. .
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~------------~~~~~~~lGa~~~~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPR------------RLEVAKNCGADVTLVVDPAKEEESSII 230 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH------------HHHHHHHTTCSEEEECCTTTSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHH------------HHHHHHHhCCCEEEcCcccccHHHHHH
Confidence 34578999999977653 4555677775 35888764322 244566778865544331 111100 0
Q ss_pred C-CC---CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 T-LS---QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~-~~---~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. .. +..+|.||-+ +|.. . -+..+..+|+++|++.+.
T Consensus 231 ~~~~~~~g~g~D~vid~---~g~~---------------~----~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDC---SGNE---------------K----CITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHSSSCCSEEEEC---SCCH---------------H----HHHHHHHHSCTTCEEEEC
T ss_pred HHhccccCCCCCEEEEC---CCCH---------------H----HHHHHHHHHhcCCEEEEE
Confidence 0 11 3568988753 2320 0 134466788999998543
No 424
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=21.89 E-value=42 Score=27.42 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=46.0
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChH--HHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSER--TLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~--~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.|= |..- +++|+.+ ..+.+|++++.+.+. ++. ...++..+.++..|. ...+.+|.++......
T Consensus 5 ~~k~~lVTGas~GIG--~aia~~la~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 79 (274)
T 3e03_A 5 SGKTLFITGASRGIG--LAIALRAARDGANVAIAAKSAVANPKLP---GTIHSAAAAVNAAGGQGLALKCDIREEDQVRA 79 (274)
T ss_dssp TTCEEEEETTTSHHH--HHHHHHHHHTTCEEEEEESCCSCCTTSC---CCHHHHHHHHHHHTSEEEEEECCTTCHHHHHH
T ss_pred CCcEEEEECCCChHH--HHHHHHHHHCCCEEEEEeccchhhhhhH---HHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 3578899993 3333 3344443 124689998887532 111 123444555655555 4457788887554211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ ...+.|.+|.|=
T Consensus 80 ~~~~~~~~~g~iD~lvnnA 98 (274)
T 3e03_A 80 AVAATVDTFGGIDILVNNA 98 (274)
T ss_dssp HHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 1 113689888874
No 425
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=21.84 E-value=1.9e+02 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCCeEEEEecCchhH-----HHHHHHHhCCCCcEEEeecCC
Q 041136 18 NNQRILLVGEGDFSF-----SDCLARAFGSATNMVASSLDS 53 (214)
Q Consensus 18 ~~~~ILlVGeGnFSF-----S~sLa~~~~~~~~l~ATs~ds 53 (214)
+...|.++|||.|+- ++..|..++ .+|+.-.-|.
T Consensus 143 ~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~--~pli~vvnnN 181 (621)
T 2o1s_A 143 NRRTVCVIGDGAITAGMAFEAMNHAGDIR--PDMLVILNDN 181 (621)
T ss_dssp CCCEEEEEETTGGGSHHHHHHHHHHHHHC--CSEEEEEEEC
T ss_pred CCeEEEEEchhhhhccHHHHHHHHHHhhC--CCEEEEEeCC
Confidence 566789999999993 566666675 3566555443
No 426
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=21.81 E-value=1.4e+02 Score=19.98 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=38.9
Q ss_pred CCeEEEEecCchhHHHHHHHHhC-CC-CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG-SA-TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~-~~-~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++|+++|=|..--+ +++.+. .+ ..|+++..+.+ .++.+...|+.+ +.+|.++....... -.
T Consensus 5 ~~~v~I~G~G~iG~~--~~~~l~~~g~~~v~~~~r~~~------------~~~~~~~~~~~~-~~~d~~~~~~~~~~-~~ 68 (118)
T 3ic5_A 5 RWNICVVGAGKIGQM--IAALLKTSSNYSVTVADHDLA------------ALAVLNRMGVAT-KQVDAKDEAGLAKA-LG 68 (118)
T ss_dssp CEEEEEECCSHHHHH--HHHHHHHCSSEEEEEEESCHH------------HHHHHHTTTCEE-EECCTTCHHHHHHH-TT
T ss_pred cCeEEEECCCHHHHH--HHHHHHhCCCceEEEEeCCHH------------HHHHHHhCCCcE-EEecCCCHHHHHHH-Hc
Confidence 468999999876544 444321 23 46777665432 133344556655 34565543211001 12
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
..|.||..-|+
T Consensus 69 ~~d~vi~~~~~ 79 (118)
T 3ic5_A 69 GFDAVISAAPF 79 (118)
T ss_dssp TCSEEEECSCG
T ss_pred CCCEEEECCCc
Confidence 58999887653
No 427
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=21.73 E-value=54 Score=26.76 Aligned_cols=75 Identities=12% Similarity=0.212 Sum_probs=42.4
Q ss_pred CCCeEEEEec-Cc--h--hHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCC
Q 041136 18 NNQRILLVGE-GD--F--SFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGe-Gn--F--SFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~ 91 (214)
.+++||+.|= |+ . ..++.|++. +.+|++++.+..+ +.++.|.+ .+....+.+|.++.+...
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~---G~~V~~~~r~~~~----------~~~~~l~~~~~~~~~~~~Dl~~~~~v~ 91 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHRE---GAELAFTYVGQFK----------DRVEKLCAEFNPAAVLPCDVISDQEIK 91 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHT---TCEEEEEECTTCH----------HHHHHHHGGGCCSEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHc---CCEEEEeeCchHH----------HHHHHHHHhcCCceEEEeecCCHHHHH
Confidence 4578999993 33 2 334444432 4689998887521 22344432 334566778888755321
Q ss_pred CC------CCCcccEEEEcC
Q 041136 92 TL------SQMKFDVIIFNF 105 (214)
Q Consensus 92 ~~------~~~~FD~IiFNF 105 (214)
.+ .-.+.|.+|.|=
T Consensus 92 ~~~~~~~~~~g~id~li~nA 111 (280)
T 3nrc_A 92 DLFVELGKVWDGLDAIVHSI 111 (280)
T ss_dssp HHHHHHHHHCSSCCEEEECC
T ss_pred HHHHHHHHHcCCCCEEEECC
Confidence 11 124689999874
No 428
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=21.61 E-value=2.1e+02 Score=22.41 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=43.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-----CC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-----PT 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-----~~ 92 (214)
..++|++||-|.-..-.|..-..- + .++.-..... . -...-.+.|++.|+.++. ..++.+... ..
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~-----~--~~~~~~~~l~~~gv~i~~-~~v~~i~~~~~v~~~~ 209 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV-----E--PDADQHALLAARGVRVET-TRIREIAGHADVVLAD 209 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC-----C--CCHHHHHHHHHTTCEEEC-SCEEEEETTEEEEETT
T ss_pred cCCEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC-----C--CCHHHHHHHHHCCcEEEc-ceeeeeecCCeEEeCC
Confidence 468999999998766544322111 2 4443332221 1 123346778889998873 334433321 01
Q ss_pred CCCCcccEEEEcCCC
Q 041136 93 LSQMKFDVIIFNFPH 107 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH 107 (214)
-....+|.||+--+.
T Consensus 210 g~~~~~D~vi~a~G~ 224 (297)
T 3fbs_A 210 GRSIALAGLFTQPKL 224 (297)
T ss_dssp SCEEEESEEEECCEE
T ss_pred CCEEEEEEEEEccCc
Confidence 123468999887543
No 429
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=21.56 E-value=1.3e+02 Score=25.50 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~ 92 (214)
....+++||++|-|..- ++..||+.+| ...|+++..+.+ .++.++++|+...++.+..++.+. ..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~------------~~~~a~~lGa~~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVES------------RLELAKQLGATHVINSKTQDPVAAIKE 253 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHH------------HHHHHHHHTCSEEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHH------------HHHHHHHcCCCEEecCCccCHHHHHHH
Confidence 35678999999988654 4666788886 235888765422 234455667765544322211110 00
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+....+|.||-. +|.. ..+..+..+|+++|++.+.
T Consensus 254 ~~~gg~D~vid~---~g~~-------------------~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 254 ITDGGVNFALES---TGSP-------------------EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HTTSCEEEEEEC---SCCH-------------------HHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCCcEEEEC---CCCH-------------------HHHHHHHHHHhcCCEEEEe
Confidence 112268887643 2320 1245567888999987543
No 430
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=21.19 E-value=73 Score=26.71 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEe-cCchhH-HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--
Q 041136 15 HYTNNQRILLVG-EGDFSF-SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-- 90 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSF-S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-- 90 (214)
....+++||++| -|..-- +..+++..| .++++|+.+.+ .++.++++|+...++.+..++.+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~------------~~~~~~~~ga~~~~~~~~~~~~~~~~ 210 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDE------------KLKIAKEYGAEYLINASKEDILRQVL 210 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHH------------HHHHHHHTTCSEEEETTTSCHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHH------------HHHHHHHcCCcEEEeCCCchHHHHHH
Confidence 456789999999 777654 344566665 48999876432 234556678765554332221110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.......+|.|+=+- |.. .+..+..+|+++|++.+.
T Consensus 211 ~~~~~~g~D~vid~~---g~~--------------------~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 211 KFTNGKGVDASFDSV---GKD--------------------TFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HHTTTSCEEEEEECC---GGG--------------------GHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCceEEEECC---ChH--------------------HHHHHHHHhccCCEEEEE
Confidence 001245688776532 320 134466788999987543
No 431
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=21.18 E-value=2.5e+02 Score=22.75 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=46.7
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHh-CCCCcEEEeecCChH--HHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAF-GSATNMVASSLDSER--TLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~-~~~~~l~ATs~ds~~--~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.++++|+.| -|.. -+++|+.+ ..+.+|++++.+.+. ++. ...++..+.++..|. ...+.+|.++.+....
T Consensus 8 ~~k~vlVTGas~GI--G~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 82 (285)
T 3sc4_A 8 RGKTMFISGGSRGI--GLAIAKRVAADGANVALVAKSAEPHPKLP---GTIYTAAKEIEEAGGQALPIVGDIRDGDAVAA 82 (285)
T ss_dssp TTCEEEEESCSSHH--HHHHHHHHHTTTCEEEEEESCCSCCSSSC---CCHHHHHHHHHHHTSEEEEEECCTTSHHHHHH
T ss_pred CCCEEEEECCCCHH--HHHHHHHHHHCCCEEEEEECChhhhhhhh---HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence 467899999 3433 33455553 235689999887542 111 123444555665554 4556778887554211
Q ss_pred C------CCCcccEEEEcC
Q 041136 93 L------SQMKFDVIIFNF 105 (214)
Q Consensus 93 ~------~~~~FD~IiFNF 105 (214)
+ .-.+.|.+|.|=
T Consensus 83 ~~~~~~~~~g~id~lvnnA 101 (285)
T 3sc4_A 83 AVAKTVEQFGGIDICVNNA 101 (285)
T ss_dssp HHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHcCCCCEEEECC
Confidence 1 013689888774
No 432
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=21.08 E-value=2.5e+02 Score=25.22 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCCCCeEEEEe-cCchhH--HHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCC
Q 041136 15 HYTNNQRILLVG-EGDFSF--SDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRH 90 (214)
Q Consensus 15 ~~~~~~~ILlVG-eGnFSF--S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~ 90 (214)
++.++++||+.| -|..-. +..|++. + ..+|+.++....+. +...+.+++|+..|..| ++.+|+++....
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~-G-~~~vvl~~R~~~~~-----~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v 294 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARR-G-APHLLLVSRSGPDA-----DGAGELVAELEALGARTTVAACDVTDRESV 294 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHH-T-CSEEEEEESSGGGS-----TTHHHHHHHHHHTTCEEEEEECCTTCHHHH
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHc-C-CCEEEEEcCCCCCc-----HHHHHHHHHHHhcCCEEEEEEeCCCCHHHH
Confidence 578899999999 554433 3334433 2 23588888765321 23455667788888754 567888864321
Q ss_pred C----CC-CCCcccEEEEcC
Q 041136 91 P----TL-SQMKFDVIIFNF 105 (214)
Q Consensus 91 ~----~~-~~~~FD~IiFNF 105 (214)
. .. ...+.|.||.|=
T Consensus 295 ~~~~~~i~~~g~ld~VIh~A 314 (486)
T 2fr1_A 295 RELLGGIGDDVPLSAVFHAA 314 (486)
T ss_dssp HHHHHTSCTTSCEEEEEECC
T ss_pred HHHHHHHHhcCCCcEEEECC
Confidence 0 01 124688888664
No 433
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=21.06 E-value=83 Score=24.90 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 18 NNQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 18 ~~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
.+++||+.| -|..- .+|++.+. .+.+|++++.+... ..+..+.+ .+-...+.+|.++.+....+ .
T Consensus 11 ~~k~vlVTGasggiG--~~~a~~l~~~G~~V~~~~r~~~~--------~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 11 KGLVAVITGGASGLG--LATAERLVGQGASAVLLDLPNSG--------GEAQAKKL--GNNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp TTCEEEEETTTSHHH--HHHHHHHHHTTCEEEEEECTTSS--------HHHHHHHH--CTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCcHh--------HHHHHHHh--CCceEEEEcCCCCHHHHHHHHH
Confidence 457899999 44433 33554431 24688888876532 12223333 22345667888865431111 1
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
....|.||.|=
T Consensus 79 ~~~~~~g~id~li~~A 94 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCA 94 (265)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHHCCCCCEEEECC
Confidence 12689988874
No 434
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=20.96 E-value=1.4e+02 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred CCCeEEEEecCchh---H--HHHHHHHhCCCCcEEEee
Q 041136 18 NNQRILLVGEGDFS---F--SDCLARAFGSATNMVASS 50 (214)
Q Consensus 18 ~~~~ILlVGeGnFS---F--S~sLa~~~~~~~~l~ATs 50 (214)
+...|.++|||.|+ + ++++|.+++.+ +|++-.
T Consensus 144 ~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~-~livi~ 180 (616)
T 3mos_A 144 SYRVYCLLGDGELSEGSVWEAMAFASIYKLD-NLVAIL 180 (616)
T ss_dssp SCCEEEEEETGGGGSHHHHHHHHHHHHTTCT-TEEEEE
T ss_pred CCEEEEEECccccccCcHHHHHHHHHHcCCC-cEEEEE
Confidence 35678999999997 3 45567766543 555543
No 435
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=20.95 E-value=1.9e+02 Score=24.45 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
..+.+++||++|-|..- ++..||+.. | ..|+||+.+.+ .++.++++|+...++
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~------------~~~~~~~lGa~~vi~ 237 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEE------------KLKLAERLGADHVVD 237 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHH------------HHHHHHHTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHH------------HHHHHHHhCCCEEEe
Confidence 45678999999988654 355667877 6 37888875422 244555667654443
No 436
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=20.76 E-value=1.5e+02 Score=22.51 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=41.2
Q ss_pred CeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 20 QRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 20 ~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++||+.|= |..--. |++.+ ..+..|++++.+... ++.|...++.++ ..|.++... ..+ ..
T Consensus 1 MkilVtGatG~iG~~--l~~~L~~~g~~V~~~~R~~~~------------~~~~~~~~~~~~-~~D~~d~~~-~~~--~~ 62 (224)
T 3h2s_A 1 MKIAVLGATGRAGSA--IVAEARRRGHEVLAVVRDPQK------------AADRLGATVATL-VKEPLVLTE-ADL--DS 62 (224)
T ss_dssp CEEEEETTTSHHHHH--HHHHHHHTTCEEEEEESCHHH------------HHHHTCTTSEEE-ECCGGGCCH-HHH--TT
T ss_pred CEEEEEcCCCHHHHH--HHHHHHHCCCEEEEEEecccc------------cccccCCCceEE-ecccccccH-hhc--cc
Confidence 47999994 554333 44443 234689998876432 223333466554 568887654 222 35
Q ss_pred ccEEEEcCCCC
Q 041136 98 FDVIIFNFPHA 108 (214)
Q Consensus 98 FD~IiFNFPH~ 108 (214)
.|.||.+-.-.
T Consensus 63 ~d~vi~~ag~~ 73 (224)
T 3h2s_A 63 VDAVVDALSVP 73 (224)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCccC
Confidence 79998776443
No 437
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=20.69 E-value=1.5e+02 Score=27.12 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=49.8
Q ss_pred cCCCCCCeEEEEe-cCch--hHHHHHHHHhCCCCcEEEe-ecCChHHHHh-----cCccHHHHHHHHHhCCCEE-EEccc
Q 041136 14 SHYTNNQRILLVG-EGDF--SFSDCLARAFGSATNMVAS-SLDSERTLKT-----KHWTSQAHLQSLWSRGCLV-LHGVN 83 (214)
Q Consensus 14 ~~~~~~~~ILlVG-eGnF--SFS~sLa~~~~~~~~l~AT-s~ds~~~l~~-----kY~~a~~ni~~L~~~g~~V-l~~VD 83 (214)
.++.+++++|+.| -|.. .++..|++. + ...|+.+ +....+.-.. .-+..++.+++|+..|..| .+.+|
T Consensus 246 ~~~~~~~~vLITGgsgGIG~~lA~~La~~-G-~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~D 323 (525)
T 3qp9_A 246 PWWQADGTVLVTGAEEPAAAEAARRLARD-G-AGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCD 323 (525)
T ss_dssp CSSCTTSEEEESSTTSHHHHHHHHHHHHH-T-CCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECC
T ss_pred ceecCCCEEEEECCCCcHHHHHHHHHHHc-C-CCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECC
Confidence 4688899999999 4544 334444443 2 3347777 7764320000 0023445677788778754 56889
Q ss_pred cccCCCCCC-----CCCCcccEEEEcC
Q 041136 84 VHTMDRHPT-----LSQMKFDVIIFNF 105 (214)
Q Consensus 84 At~L~~~~~-----~~~~~FD~IiFNF 105 (214)
+++...... ....+.|.||.|=
T Consensus 324 vtd~~~v~~~~~~i~~~g~id~vVh~A 350 (525)
T 3qp9_A 324 LTDAEAAARLLAGVSDAHPLSAVLHLP 350 (525)
T ss_dssp TTSHHHHHHHHHTSCTTSCEEEEEECC
T ss_pred CCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence 887443100 1235688888763
No 438
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=20.54 E-value=81 Score=25.79 Aligned_cols=77 Identities=9% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCeEEEEec-CchhHHHHHHHHh-CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGE-GDFSFSDCLARAF-GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGe-GnFSFS~sLa~~~-~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~ 94 (214)
.++++|+.|= |..= +++|+.+ ..+.+|++++.+. ...+..++++..|.. ..+.+|.++.+....+.
T Consensus 30 ~gk~~lVTGas~GIG--~aia~~la~~G~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 98 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIG--RAIAHGYARAGAHVLAWGRTD---------GVKEVADEIADGGGSAEAVVADLADLEGAANVA 98 (273)
T ss_dssp TTCEEEEETTTSHHH--HHHHHHHHHTTCEEEEEESST---------HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH--HHHHHHHHHCCCEEEEEcCHH---------HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 3678999994 3333 3344443 1245788887332 133445666666654 45667888755421111
Q ss_pred -----CCcccEEEEcC
Q 041136 95 -----QMKFDVIIFNF 105 (214)
Q Consensus 95 -----~~~FD~IiFNF 105 (214)
..+.|.+|-|=
T Consensus 99 ~~~~~~g~iD~lv~nA 114 (273)
T 3uf0_A 99 EELAATRRVDVLVNNA 114 (273)
T ss_dssp HHHHHHSCCCEEEECC
T ss_pred HHHHhcCCCcEEEECC
Confidence 13689888773
Done!