Query 041139
Match_columns 192
No_of_seqs 111 out of 392
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 8.6E-44 1.9E-48 285.7 20.7 178 1-189 9-197 (198)
2 PF14869 DUF4488: Domain of un 54.1 94 0.002 23.5 8.3 69 42-132 2-71 (133)
3 PF05973 Gp49: Phage derived p 52.4 58 0.0013 22.2 5.7 42 13-55 7-50 (91)
4 PF03076 GP3: Equine arteritis 43.1 23 0.00049 26.5 2.4 18 162-179 121-138 (160)
5 TIGR02116 toxin_Txe_YoeB toxin 41.9 38 0.00083 22.7 3.3 37 14-52 17-53 (80)
6 COG3908 Uncharacterized protei 41.5 93 0.002 20.9 4.8 21 164-186 10-30 (77)
7 COG2088 SpoVG Uncharacterized 37.6 34 0.00074 24.1 2.4 22 167-189 25-46 (95)
8 PF02643 DUF192: Uncharacteriz 30.0 46 0.001 23.9 2.3 16 165-180 48-63 (108)
9 PRK03760 hypothetical protein; 27.6 56 0.0012 24.0 2.4 15 166-180 60-74 (117)
10 COG1430 Uncharacterized conser 26.5 51 0.0011 24.7 2.0 13 167-179 64-76 (126)
11 PRK10470 ribosome hibernation 25.7 77 0.0017 21.8 2.7 29 5-33 5-33 (95)
12 TIGR00053 addiction module tox 25.4 75 0.0016 21.5 2.6 33 15-48 23-55 (89)
13 PF14834 GST_C_4: Glutathione 23.6 1E+02 0.0022 22.8 3.1 36 9-49 37-72 (117)
14 TIGR02530 flg_new flagellar op 23.3 1.2E+02 0.0025 21.7 3.2 26 7-32 27-52 (96)
15 TIGR00269 conserved hypothetic 23.2 67 0.0015 22.8 2.1 21 14-34 36-56 (104)
16 PRK10324 translation inhibitor 23.1 99 0.0021 22.4 3.0 29 5-33 5-33 (113)
17 cd06396 PB1_NBR1 The PB1 domai 22.4 52 0.0011 22.7 1.3 10 166-175 39-48 (81)
18 COG3657 Uncharacterized protei 22.1 91 0.002 22.3 2.4 36 15-54 23-58 (100)
19 cd03532 Rieske_RO_Alpha_VanA_D 20.7 1.5E+02 0.0033 21.1 3.6 26 165-190 18-43 (116)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=8.6e-44 Score=285.74 Aligned_cols=178 Identities=32% Similarity=0.543 Sum_probs=141.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCeeEEEEEEccccccccCCCCCCCCCCCcCcceecee
Q 041139 1 SAVSGLNRGLAANTDDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRLLYSSAFSSRTLGGNRPGPPTGRLLPITLGQV 80 (192)
Q Consensus 1 ~a~a~t~rG~~a~~~~r~~I~~li~~LE~lnp~~~p~~~~~lL~G~W~L~yts~~~~~~l~~~~~~~~~grl~~~~~g~v 80 (192)
+++++|+||+.+++++|++|+++|++||++||+++|+.+.++|+|+|+|+|||+.+...+ +..++++++.+|++
T Consensus 9 ~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~------l~~~~~~~~~~~~v 82 (198)
T PF04755_consen 9 QAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSL------LQRGRLPGVRVGRV 82 (198)
T ss_pred HHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccc------ccccccccccccce
Confidence 378999999999999999999999999999999999754499999999999999764422 11244455689999
Q ss_pred EEEEeCCCCeeEEEEEeeecCCCCCCCeeEEEEEEEEEEEcCCceEEEEEEEEEEEecCCC-----------CCCCCCcC
Q 041139 81 FQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFELIGSSNIKIIFEKTTVKTTGNL-----------SQLPPLEL 149 (192)
Q Consensus 81 ~Q~id~~~~~~~N~v~~~~g~p~~l~~~~~~~~v~a~~~~~~~~r~~v~F~~~~v~~~~~~-----------~~~~~~~~ 149 (192)
||+||.+++++.|+|++.. ++.+++.+.+.+++++.+++|+.++|+++.+++...+ ..+|+...
T Consensus 83 ~Q~id~~~~~~~N~v~~~~-----~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~ 157 (198)
T PF04755_consen 83 FQTIDADNGRVENVVELSG-----FPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGIS 157 (198)
T ss_pred EEEEECCCceEEEEEEEec-----cCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccc
Confidence 9999999999999999882 2335788999999999999999999999999752211 11222211
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCCCeeEEecCCCcEEEE
Q 041139 150 PRFPDALRPPSDTRSGEFEVTYLDNDTRITRGDRAELRVF 189 (192)
Q Consensus 150 p~~p~~~~~~~~~~~g~l~~tYLD~dlRI~Rg~~G~lFV~ 189 (192)
..+|..++.+...++||||||||||||||+||++|++|||
T Consensus 158 ~~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl 197 (198)
T PF04755_consen 158 DELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVL 197 (198)
T ss_pred cccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEe
Confidence 1123333334457899999999999999999999999998
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=54.14 E-value=94 Score=23.54 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=43.0
Q ss_pred CcCeeEEEE-EEccccccccCCCCCCCCCCCcCcceeceeEEEEeCCCCeeEEEEEeeecCCCCCCCeeEEEEEEEEEEE
Q 041139 42 RLQGKWRLL-YSSAFSSRTLGGNRPGPPTGRLLPITLGQVFQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFEL 120 (192)
Q Consensus 42 lL~G~W~L~-yts~~~~~~l~~~~~~~~~grl~~~~~g~v~Q~id~~~~~~~N~v~~~~g~p~~l~~~~~~~~v~a~~~~ 120 (192)
.|.|-|+|+ |-+... ..- |. ...+.++-++. ++|++.|+.-+. . -.+.++..+.|+.
T Consensus 2 ~l~GVWQ~c~~~~~~~-~~~---------g~---l~~~~~lKilS-~Dgtf~Ni~~~~--~------~~aiIt~~GtY~~ 59 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESP-EVP---------GK---LKPSNVLKILS-DDGTFVNITMIP--K------SGAIITGYGTYEQ 59 (133)
T ss_pred CceEEEEEEEEeecCc-ccC---------ce---EeecccEEEEc-CCCcEEEEEEeC--C------CCcEEEEeEEEEE
Confidence 378999999 444321 111 11 23456788885 568999986643 1 1356777888988
Q ss_pred cCCceEEEEEEE
Q 041139 121 IGSSNIKIIFEK 132 (192)
Q Consensus 121 ~~~~r~~v~F~~ 132 (192)
.++....-..++
T Consensus 60 ~sD~~Y~E~IeK 71 (133)
T PF14869_consen 60 PSDNIYVESIEK 71 (133)
T ss_pred cCCccceeeecc
Confidence 887755444444
No 3
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=52.44 E-value=58 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCCCCc--CeeEEEEEEccc
Q 041139 13 NTDDLQKADAAAKELEAVGGPVDLSVGLDRL--QGKWRLLYSSAF 55 (192)
Q Consensus 13 ~~~~r~~I~~li~~LE~lnp~~~p~~~~~lL--~G~W~L~yts~~ 55 (192)
++..+.+|...++.|+..+|...++. ...+ +|-|||......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~-~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPL-FKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCc-ccccCcCCeEEEEEeecC
Confidence 56778999999999998885433322 2334 699999998764
No 4
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=43.06 E-value=23 Score=26.52 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=15.5
Q ss_pred CCceEEEEEEeCCCeeEE
Q 041139 162 TRSGEFEVTYLDNDTRIT 179 (192)
Q Consensus 162 ~~~g~l~~tYLD~dlRI~ 179 (192)
.+-|.+...|+|||||..
T Consensus 121 ~glg~~sfsfidedlrlh 138 (160)
T PF03076_consen 121 AGLGQLSFSFIDEDLRLH 138 (160)
T ss_pred CCcceEEEEEecccceee
Confidence 456899999999999975
No 5
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=41.93 E-value=38 Score=22.68 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCeeEEEEEE
Q 041139 14 TDDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRLLYS 52 (192)
Q Consensus 14 ~~~r~~I~~li~~LE~lnp~~~p~~~~~lL~G~W~L~yt 52 (192)
++.++.|.++|++|+ .||.+. ......|.|.|.-.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~-~~~~~~L~G~~~g~~r 53 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKG-KGKPEPLKGDLSGYWS 53 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCC-CCCcccCCCCCCCcEE
Confidence 457888999998887 466431 1233557776543343
No 6
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.49 E-value=93 Score=20.87 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=15.9
Q ss_pred ceEEEEEEeCCCeeEEecCCCcE
Q 041139 164 SGEFEVTYLDNDTRITRGDRAEL 186 (192)
Q Consensus 164 ~g~l~~tYLD~dlRI~Rg~~G~l 186 (192)
...-.|-|||.|.+|. ..|+.
T Consensus 10 ~~ea~iryldgdf~vv--~~Gsf 30 (77)
T COG3908 10 SREAVIRYLDGDFQVV--SPGSF 30 (77)
T ss_pred CceeEEEEecCceEEE--cCCcE
Confidence 4456789999999999 45553
No 7
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=37.63 E-value=34 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=16.1
Q ss_pred EEEEEeCCCeeEEecCCCcEEEE
Q 041139 167 FEVTYLDNDTRITRGDRAELRVF 189 (192)
Q Consensus 167 l~~tYLD~dlRI~Rg~~G~lFV~ 189 (192)
||--|+=.|+|+.-|++| +||-
T Consensus 25 ~D~efVvhdirVi~G~~G-lfVA 46 (95)
T COG2088 25 LDNEFVVHDIRVIEGNNG-LFVA 46 (95)
T ss_pred ecceEEEeccEEEeCCcc-eEEE
Confidence 333344459999999998 8885
No 8
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=30.01 E-value=46 Score=23.87 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=11.9
Q ss_pred eEEEEEEeCCCeeEEe
Q 041139 165 GEFEVTYLDNDTRITR 180 (192)
Q Consensus 165 g~l~~tYLD~dlRI~R 180 (192)
--||+.|||.|.||..
T Consensus 48 ~pLDi~fld~~g~Vv~ 63 (108)
T PF02643_consen 48 FPLDIAFLDSDGRVVK 63 (108)
T ss_dssp S-EEEEEE-TTSBEEE
T ss_pred eeEEEEEECCCCeEEE
Confidence 3489999999999874
No 9
>PRK03760 hypothetical protein; Provisional
Probab=27.63 E-value=56 Score=23.97 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=12.9
Q ss_pred EEEEEEeCCCeeEEe
Q 041139 166 EFEVTYLDNDTRITR 180 (192)
Q Consensus 166 ~l~~tYLD~dlRI~R 180 (192)
-||+.|||.|-||..
T Consensus 60 pLDiiFld~~g~Vv~ 74 (117)
T PRK03760 60 SIDVIFLDSNRRVVD 74 (117)
T ss_pred eeEEEEECCCCeEEE
Confidence 589999999988774
No 10
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=51 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=11.8
Q ss_pred EEEEEeCCCeeEE
Q 041139 167 FEVTYLDNDTRIT 179 (192)
Q Consensus 167 l~~tYLD~dlRI~ 179 (192)
||+.|||+|-||.
T Consensus 64 LDiiFid~dg~i~ 76 (126)
T COG1430 64 LDIIFIDSDGRVV 76 (126)
T ss_pred eEEEEEcCCCCEE
Confidence 8999999998886
No 11
>PRK10470 ribosome hibernation promoting factor HPF; Provisional
Probab=25.68 E-value=77 Score=21.85 Aligned_cols=29 Identities=10% Similarity=-0.114 Sum_probs=25.9
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCC
Q 041139 5 GLNRGLAANTDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 5 ~t~rG~~a~~~~r~~I~~li~~LE~lnp~ 33 (192)
=+.|++..|+..++.|++-++.|+.+.+.
T Consensus 5 i~~r~i~~t~al~~~v~~kl~kL~r~~~~ 33 (95)
T PRK10470 5 ITGHNVEITEALREFVTAKFAKLEQYFDR 33 (95)
T ss_pred EEEEeeccCHHHHHHHHHHHHHHHHhcCC
Confidence 36788999999999999999999999874
No 12
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=25.41 E-value=75 Score=21.53 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCcCeeEE
Q 041139 15 DDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWR 48 (192)
Q Consensus 15 ~~r~~I~~li~~LE~lnp~~~p~~~~~lL~G~W~ 48 (192)
.++..|.+++++|...+|.|.. .....|.|.|.
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~-~~~~~L~G~~~ 55 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEH-YKDHPLRGPWK 55 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcc-cCCccCcCCcC
Confidence 4567788888888874443322 23346777665
No 13
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=23.61 E-value=1e+02 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCeeEEE
Q 041139 9 GLAANTDDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRL 49 (192)
Q Consensus 9 G~~a~~~~r~~I~~li~~LE~lnp~~~p~~~~~lL~G~W~L 49 (192)
....|++.+.+++.|+...|.+-+... +-|.|+|..
T Consensus 37 ~~pLs~~a~~~a~kL~~~a~~ll~~g~-----~~LFGewsI 72 (117)
T PF14834_consen 37 KPPLSEAAQAAAQKLIAVAERLLADGG-----PNLFGEWSI 72 (117)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTT-------SSTTSS--H
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhccCC-----CCccccchH
Confidence 344688889999999999999986433 359999964
No 14
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=23.27 E-value=1.2e+02 Score=21.73 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=24.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCC
Q 041139 7 NRGLAANTDDLQKADAAAKELEAVGG 32 (192)
Q Consensus 7 ~rG~~a~~~~r~~I~~li~~LE~lnp 32 (192)
.||+..++++-+.|++.+.+.+..+-
T Consensus 27 ~R~I~l~~~~~~~i~~av~~A~~KG~ 52 (96)
T TIGR02530 27 ERNISINPDDWKKLLEAVEEAESKGV 52 (96)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 69999999999999999999998774
No 15
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=23.20 E-value=67 Score=22.84 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 041139 14 TDDLQKADAAAKELEAVGGPV 34 (192)
Q Consensus 14 ~~~r~~I~~li~~LE~lnp~~ 34 (192)
...|.++.+++++||..+|..
T Consensus 36 ~a~R~~~k~~L~~LE~~~P~~ 56 (104)
T TIGR00269 36 LSVRARIRDFLYDLENKKPGV 56 (104)
T ss_pred CCchHHHHHHHHHHHHHCcCh
Confidence 567999999999999999863
No 16
>PRK10324 translation inhibitor protein RaiA; Provisional
Probab=23.13 E-value=99 Score=22.40 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=26.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCC
Q 041139 5 GLNRGLAANTDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 5 ~t~rG~~a~~~~r~~I~~li~~LE~lnp~ 33 (192)
=|.|++..|+.-++.|++-++.|+.+.+.
T Consensus 5 Itgr~v~~tdalr~~ie~Kl~kL~k~~~~ 33 (113)
T PRK10324 5 ITSKQMEITPAIRQHVADRLAKLEKWQTH 33 (113)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHHHhcCC
Confidence 36789999999999999999999999974
No 17
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=22.41 E-value=52 Score=22.71 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=9.2
Q ss_pred EEEEEEeCCC
Q 041139 166 EFEVTYLDND 175 (192)
Q Consensus 166 ~l~~tYLD~d 175 (192)
.+++.|||||
T Consensus 39 ~f~lKYlDde 48 (81)
T cd06396 39 DIQIKYVDEE 48 (81)
T ss_pred cceeEEEcCC
Confidence 7999999996
No 18
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.12 E-value=91 Score=22.31 Aligned_cols=36 Identities=14% Similarity=-0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCcCeeEEEEEEcc
Q 041139 15 DDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRLLYSSA 54 (192)
Q Consensus 15 ~~r~~I~~li~~LE~lnp~~~p~~~~~lL~G~W~L~yts~ 54 (192)
-.+++|..-+..|+.-||. +..|-=+|-|||.----
T Consensus 23 ~Aka~I~~Rl~rl~~GN~G----D~kpvgeGV~ELRId~G 58 (100)
T COG3657 23 RAKAKIAARLDRLALGNFG----DVKPVGEGVSELRIDHG 58 (100)
T ss_pred HHHHHHHHHHHHHhcCCCc----CccccccchhhheeccC
Confidence 3478899999999999985 22455689999976543
No 19
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=20.74 E-value=1.5e+02 Score=21.14 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCeeEEecCCCcEEEEE
Q 041139 165 GEFEVTYLDNDTRITRGDRAELRVFV 190 (192)
Q Consensus 165 g~l~~tYLD~dlRI~Rg~~G~lFV~~ 190 (192)
.....+.++.++-|.|..+|.+|++.
T Consensus 18 ~~~~~~~~g~~i~l~r~~~g~~~a~~ 43 (116)
T cd03532 18 KPLARTLLGEPVVLYRTQDGRVAALE 43 (116)
T ss_pred CcEEEEECCceEEEEECCCCCEEEeC
Confidence 34567788999999999999998863
Done!