Query 041139
Match_columns 192
No_of_seqs 111 out of 392
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 77.3 19 0.00065 26.5 8.7 70 40-130 9-78 (142)
2 4i95_A Putative uncharacterize 76.0 21 0.0007 26.2 9.1 72 40-132 9-80 (142)
3 2ia9_A Putative septation prot 35.1 30 0.001 23.9 3.0 26 162-189 19-49 (100)
4 3oei_C RELK (toxin RV3358); to 34.4 47 0.0016 22.5 3.9 20 13-33 32-51 (96)
5 2a6s_A Toxin YOEB; YEFM, antit 33.0 57 0.002 20.4 4.0 19 14-33 21-39 (84)
6 1z8m_A Conserved hypothetical 29.3 43 0.0015 21.3 2.9 16 18-33 25-40 (88)
7 3pjy_A Hypothetical signal pep 28.9 32 0.0011 24.9 2.4 15 166-180 69-83 (136)
8 3m7a_A Uncharacterized protein 28.6 32 0.0011 25.1 2.4 15 166-180 83-97 (140)
9 3bpq_B Toxin RELE3; protein to 25.5 1.2E+02 0.0042 18.6 4.9 20 13-32 17-36 (88)
10 2i9x_A Putative septation prot 19.8 83 0.0028 21.0 2.9 27 162-189 19-49 (87)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=77.33 E-value=19 Score=26.48 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=43.7
Q ss_pred CCCcCeeEEEEEEccccccccCCCCCCCCCCCcCcceeceeEEEEeCCCCeeEEEEEeeecCCCCCCCeeEEEEEEEEEE
Q 041139 40 LDRLQGKWRLLYSSAFSSRTLGGNRPGPPTGRLLPITLGQVFQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFE 119 (192)
Q Consensus 40 ~~lL~G~W~L~yts~~~~~~l~~~~~~~~~grl~~~~~g~v~Q~id~~~~~~~N~v~~~~g~p~~l~~~~~~~~v~a~~~ 119 (192)
+..|.|-|+|++-.+.. +-+ -|+ ...+.++=+|. ++|++.|.+-.. . -.+.+...+.|+
T Consensus 9 ~~~L~GvWQ~c~y~~~~--~~~-------~~~---l~~s~~~KIlS-~DgtF~N~~m~~--~------~~aiIt~yGtY~ 67 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSES--PDV-------PGA---LKPSNTFKVLS-DDGRIVNFTIIP--G------ADAIITGYGTYK 67 (142)
T ss_dssp SCCCCEEEEEEEEEESS--TTS-------CCE---EEEEEEEEEEC-TTSEEEEEECCT--T------SCCEEEEEEEEE
T ss_pred cccceEEeEEeeEeecC--CCC-------Cce---EeecCceEEEC-CCCcEEEEEEeC--C------CCcEEEEeEEEE
Confidence 45799999999554422 110 111 24567888996 569999986432 1 134567788999
Q ss_pred EcCCceEEEEE
Q 041139 120 LIGSSNIKIIF 130 (192)
Q Consensus 120 ~~~~~r~~v~F 130 (192)
..+|+...-..
T Consensus 68 l~SD~~Y~E~i 78 (142)
T 4gzv_A 68 QLTDDSYKESI 78 (142)
T ss_dssp EEETTEEEEEE
T ss_pred ecCCCeeeeee
Confidence 88887644333
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=76.01 E-value=21 Score=26.19 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCcCeeEEEEEEccccccccCCCCCCCCCCCcCcceeceeEEEEeCCCCeeEEEEEeeecCCCCCCCeeEEEEEEEEEE
Q 041139 40 LDRLQGKWRLLYSSAFSSRTLGGNRPGPPTGRLLPITLGQVFQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFE 119 (192)
Q Consensus 40 ~~lL~G~W~L~yts~~~~~~l~~~~~~~~~grl~~~~~g~v~Q~id~~~~~~~N~v~~~~g~p~~l~~~~~~~~v~a~~~ 119 (192)
...|.|-|+|+.-.+...... |- ++-++.+-++. ++|++.|++-.. + -.+.+...+.|+
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~---------g~---L~psn~lKIlS-dDgtF~Ni~m~~-~-------~~aiIt~~GtY~ 67 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIP---------GV---LKPSNTFKVLS-DDGRIVNFTIRP-G-------TDAIITGYGTYR 67 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSC---------CE---EEEEEEEEEEC-TTSEEEEEECCT-T-------SCCEEEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCCc---------eE---eccCccEEEEc-CCCcEEEEEEec-C-------CCcEEEEeEEEE
Confidence 346999999998776431111 11 23457888895 568999985442 1 135567788898
Q ss_pred EcCCceEEEEEEE
Q 041139 120 LIGSSNIKIIFEK 132 (192)
Q Consensus 120 ~~~~~r~~v~F~~ 132 (192)
..++....-..++
T Consensus 68 ~~SD~~Y~E~IeK 80 (142)
T 4i95_A 68 QISAAAYKESIEK 80 (142)
T ss_dssp EEETTEEEEEEEE
T ss_pred ecCCcceeeeecc
Confidence 8887765444443
No 3
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=35.12 E-value=30 Score=23.86 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=20.5
Q ss_pred CCceEEEEEEeCC-----CeeEEecCCCcEEEE
Q 041139 162 TRSGEFEVTYLDN-----DTRITRGDRAELRVF 189 (192)
Q Consensus 162 ~~~g~l~~tYLD~-----dlRI~Rg~~G~lFV~ 189 (192)
.-+|.-.+|+ |+ |+||.-|++| +||-
T Consensus 19 klkA~aSVt~-dd~fvI~dIkVieg~~G-lFVa 49 (100)
T 2ia9_A 19 RMRAIASITL-DHEFVVHDIRVIDGNNG-LFVA 49 (100)
T ss_dssp SEEEEEEEEE-TTTEEEEEEEEEEETTE-EEEE
T ss_pred CEEEEEEEEE-CCEEEEeeEEEEECCCc-eEEE
Confidence 4477777776 55 8999999997 9984
No 4
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=34.40 E-value=47 Score=22.50 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCC
Q 041139 13 NTDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 13 ~~~~r~~I~~li~~LE~lnp~ 33 (192)
.+..++.|.++|++|+. ||-
T Consensus 32 dk~~~krI~~~I~~l~~-nP~ 51 (96)
T 3oei_C 32 DRKTARRITRLIGEIQR-DPF 51 (96)
T ss_dssp CHHHHHHHHHHHHHHHH-CTT
T ss_pred CHHHHHHHHHHHHHHHh-CCC
Confidence 34557789999998874 763
No 5
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=32.95 E-value=57 Score=20.43 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 041139 14 TDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 14 ~~~r~~I~~li~~LE~lnp~ 33 (192)
....+.|.+++++|+. ||-
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~ 39 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPF 39 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STT
T ss_pred HHHHHHHHHHHHHHHh-CCC
Confidence 3446778888888865 664
No 6
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=29.31 E-value=43 Score=21.29 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhcCCC
Q 041139 18 QKADAAAKELEAVGGP 33 (192)
Q Consensus 18 ~~I~~li~~LE~lnp~ 33 (192)
..+.++++.|...||.
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5677888888644663
No 7
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=28.93 E-value=32 Score=24.91 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=12.7
Q ss_pred EEEEEEeCCCeeEEe
Q 041139 166 EFEVTYLDNDTRITR 180 (192)
Q Consensus 166 ~l~~tYLD~dlRI~R 180 (192)
-||+.|||+|-||..
T Consensus 69 PLDiiFld~~g~Vv~ 83 (136)
T 3pjy_A 69 PLDMLFIASDGTIRT 83 (136)
T ss_dssp CEEEEEECTTSBEEE
T ss_pred ceEEEEECCCCEEEE
Confidence 389999999988864
No 8
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=28.59 E-value=32 Score=25.05 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=12.9
Q ss_pred EEEEEEeCCCeeEEe
Q 041139 166 EFEVTYLDNDTRITR 180 (192)
Q Consensus 166 ~l~~tYLD~dlRI~R 180 (192)
-||+.|||+|-||..
T Consensus 83 PLDiiFid~dg~Vv~ 97 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMN 97 (140)
T ss_dssp CEEEEEECTTSBEEE
T ss_pred ceEEEEECCCCeEEE
Confidence 489999999988874
No 9
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=25.53 E-value=1.2e+02 Score=18.61 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHhcCC
Q 041139 13 NTDDLQKADAAAKELEAVGG 32 (192)
Q Consensus 13 ~~~~r~~I~~li~~LE~lnp 32 (192)
.+..+..+.+++++++.+..
T Consensus 17 ~~~~~~~i~~~i~~~~~l~~ 36 (88)
T 3bpq_B 17 PGHIRKRIKLIIEECQNSNS 36 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhccc
Confidence 35566778888888876543
No 10
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=19.82 E-value=83 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCceEEEEEEeCC----CeeEEecCCCcEEEE
Q 041139 162 TRSGEFEVTYLDN----DTRITRGDRAELRVF 189 (192)
Q Consensus 162 ~~~g~l~~tYLD~----dlRI~Rg~~G~lFV~ 189 (192)
.-+|.-.+|+=|. |+||.-|++| +||-
T Consensus 19 ~lka~asVt~dd~fvI~~ikVieg~~G-lFVa 49 (87)
T 2i9x_A 19 RMKALVSITLDEAFVIHDLRVIEGNSG-LFVA 49 (87)
T ss_dssp SEEEEEEEEETTTEEEEEEEEEEETTE-EEEE
T ss_pred CEEEEEEEEECCEEEEeeEEEEECCCc-eEEE
Confidence 4478888877332 8999999997 8884
Done!