Query 041139
Match_columns 192
No_of_seqs 111 out of 392
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 06:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041139.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041139hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gu3a1 d.17.1.6 (A:99-161) Un 36.2 9.8 0.00072 22.5 2.1 16 164-179 31-46 (63)
2 d1mu2a2 e.8.1.2 (A:3-429) HIV- 30.6 23 0.0016 28.6 4.2 42 10-52 22-74 (427)
3 d1wmia1 d.298.1.2 (A:1-88) Hyp 28.3 11 0.00083 23.1 1.5 22 13-35 19-40 (88)
4 d2ywqa1 d.204.1.1 (A:1-95) Rib 23.5 26 0.0019 21.5 2.7 29 5-33 6-34 (95)
5 d1imua_ d.204.1.1 (A:) Ribosom 18.4 69 0.0051 19.8 4.1 29 5-33 5-33 (107)
6 d1wzaa1 b.71.1.1 (A:437-515) B 18.4 25 0.0018 20.6 1.5 15 41-55 38-52 (79)
7 d1qpza1 a.35.1.5 (A:2-58) Puri 17.7 49 0.0036 18.7 2.8 18 11-28 26-43 (57)
8 d2hsga1 a.35.1.5 (A:2-58) Gluc 17.4 49 0.0036 18.6 2.7 18 11-28 27-44 (57)
9 d1dl5a2 d.197.1.1 (A:214-317) 17.3 25 0.0018 21.9 1.4 16 162-179 49-64 (104)
10 d2bkfa1 d.15.2.2 (A:1-85) Next 17.0 30 0.0022 21.5 1.7 9 167-175 44-52 (85)
No 1
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=36.22 E-value=9.8 Score=22.54 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.0
Q ss_pred ceEEEEEEeCCCeeEE
Q 041139 164 SGEFEVTYLDNDTRIT 179 (192)
Q Consensus 164 ~g~l~~tYLD~dlRI~ 179 (192)
.-.||+||+|++=|.+
T Consensus 31 ~pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 31 VLLWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEEEEECTTSCEE
T ss_pred EEEEEEEEEeCCCCEE
Confidence 5689999999986654
No 2
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=30.63 E-value=23 Score=28.65 Aligned_cols=42 Identities=14% Similarity=0.356 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCC-----CCCCCCCCCc------CeeEEEEEE
Q 041139 10 LAANTDDLQKADAAAKELEAVGGP-----VDLSVGLDRL------QGKWRLLYS 52 (192)
Q Consensus 10 ~~a~~~~r~~I~~li~~LE~lnp~-----~~p~~~~~lL------~G~W~L~yt 52 (192)
...++++++++.+.|++|+..+-- .+| -++|.+ .|+||++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp-~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNP-YNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCC-CBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCc-CcCceEEEEcCCCCCcEEEEc
Confidence 346899999999999999998732 222 234432 499999854
No 3
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.30 E-value=11 Score=23.08 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCC
Q 041139 13 NTDDLQKADAAAKELEAVGGPVD 35 (192)
Q Consensus 13 ~~~~r~~I~~li~~LE~lnp~~~ 35 (192)
.+..+..|.+.+++|+. ||.+.
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~ 40 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPR 40 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcC
Confidence 56778888888888765 66443
No 4
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=23.51 E-value=26 Score=21.47 Aligned_cols=29 Identities=10% Similarity=0.042 Sum_probs=25.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCC
Q 041139 5 GLNRGLAANTDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 5 ~t~rG~~a~~~~r~~I~~li~~LE~lnp~ 33 (192)
=|.|++..|+.-++.|++-++.|+...+.
T Consensus 6 Itgr~~~lt~al~~~ve~kl~kL~k~~~~ 34 (95)
T d2ywqa1 6 LIGRNLEITDAIRDYVEKKLARLDRYQDG 34 (95)
T ss_dssp EEEETSCCCHHHHHHHHHHHHGGGGSCSS
T ss_pred EEEECCccCHHHHHHHHHHHHHHHHhCCC
Confidence 36789999999999999999999988764
No 5
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=18.42 E-value=69 Score=19.84 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=25.8
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHhcCCC
Q 041139 5 GLNRGLAANTDDLQKADAAAKELEAVGGP 33 (192)
Q Consensus 5 ~t~rG~~a~~~~r~~I~~li~~LE~lnp~ 33 (192)
=+.|++..|+.-++.|++-++.|+...+.
T Consensus 5 i~~r~~~lt~al~~~i~~kl~kl~k~~~~ 33 (107)
T d1imua_ 5 ITSKQMDITPAIREHLEERLAKLGKWQTQ 33 (107)
T ss_dssp ECCSSSCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHHhhCCC
Confidence 46889999999999999999999988764
No 6
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=18.41 E-value=25 Score=20.63 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.1
Q ss_pred CCcCeeEEEEEEccc
Q 041139 41 DRLQGKWRLLYSSAF 55 (192)
Q Consensus 41 ~lL~G~W~L~yts~~ 55 (192)
...+|.|.|+|.|..
T Consensus 38 kvasgnwtllfnsgd 52 (79)
T d1wzaa1 38 KVASGNWTLLFNSGD 52 (79)
T ss_dssp EEESSCEEEEEESSS
T ss_pred EEecCcEEEEEccCC
Confidence 356899999999864
No 7
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.73 E-value=49 Score=18.67 Aligned_cols=18 Identities=28% Similarity=0.156 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 041139 11 AANTDDLQKADAAAKELE 28 (192)
Q Consensus 11 ~a~~~~r~~I~~li~~LE 28 (192)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 468999999999999885
No 8
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=17.38 E-value=49 Score=18.64 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 041139 11 AANTDDLQKADAAAKELE 28 (192)
Q Consensus 11 ~a~~~~r~~I~~li~~LE 28 (192)
..+++.|+.|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 468999999999999984
No 9
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=17.32 E-value=25 Score=21.87 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=11.8
Q ss_pred CCceEEEEEEeCCCeeEE
Q 041139 162 TRSGEFEVTYLDNDTRIT 179 (192)
Q Consensus 162 ~~~g~l~~tYLD~dlRI~ 179 (192)
.|.|..+ |||++|||-
T Consensus 49 gp~g~ve--fl~~~mriy 64 (104)
T d1dl5a2 49 GPNGVVE--FLDDRMRIY 64 (104)
T ss_dssp CSSEEEE--EETTEEEEE
T ss_pred CCCceee--ecCCcEEEe
Confidence 3466554 899999995
No 10
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.00 E-value=30 Score=21.52 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=8.3
Q ss_pred EEEEEeCCC
Q 041139 167 FEVTYLDND 175 (192)
Q Consensus 167 l~~tYLD~d 175 (192)
+.+.|+|||
T Consensus 44 ~~lkY~Ddd 52 (85)
T d2bkfa1 44 IQIKYLDEE 52 (85)
T ss_dssp EEEEEECTT
T ss_pred ceEEEEcCC
Confidence 899999997
Done!