BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041140
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 46 CIQSEREALLRFKQDLKDPANRLALWSDGNCC--TWAGVVCNDSTGHVLELRLGNPFLHD 103
C +++ALL+ K+DL +P + +CC TW GV+C+ T L L+
Sbjct: 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 104 DEPFWLED-----------YKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL 152
+P+ + Y + L+G I P++ L L YL +++ N A +P FL
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFL 121
Query: 153 GSMGSLRHIDLSRAEFTGMIPYQLGNLSNL 182
+ +L +D S +G +P + +L NL
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
L G+I L + +L ++ LSNN ++P ++G + +L + LS F+G IP +LG+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 179 LSNLQYLDLSSQI 191
+L +LDL++ +
Sbjct: 537 CRSLIWLDLNTNL 549
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 42/194 (21%)
Query: 99 PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL 158
P L + L++ + + GKI P+L + LV L LS N+ +P LGS+ L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKL 444
Query: 159 RHIDLSRAEFTGMIPYQLGNLSNLQYL-----DLSSQIPLSFLYXXXXXXXXXXXXXXXX 213
R + L G IP +L + L+ L DL+ +IP
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--------------------- 483
Query: 214 XXTGVDLSTASDWFLVTN------------MLPSLQVLKLSACSLHNSLPELPIANFSSL 261
+G+ T +W ++N L +L +LKLS S ++P + + SL
Sbjct: 484 --SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 540
Query: 262 YTLDLSYNEFDNTL 275
LDL+ N F+ T+
Sbjct: 541 IWLDLNTNLFNGTI 554
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 121 GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS 180
G +P+ + +++L++S N +P +GSM L ++L + +G IP ++G+L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 181 NLQYLDLSSQ 190
L LDLSS
Sbjct: 681 GLNILDLSSN 690
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 115 ETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL-GSMGSLRHIDLSRAEFTGMIP 173
+++ +G I P L LK L YL L+ N F ++P FL G+ +L +DLS F G +P
Sbjct: 255 SSNQFVGPIPP--LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 174 YQLG 177
G
Sbjct: 312 PFFG 315
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
+L G+I + L++L L+LSNN+F +P LG SL +DL+ F G IP +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ- 190
+L +L++S+NNF +P FLG +L+H+D+S + +G + + L+ L++SS
Sbjct: 201 NLEFLDVSSNNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 191 ----IP---------LSFLYXXXXXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQ 237
IP LS TG+DLS + V S
Sbjct: 259 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 238 VLKLSACSLHNSLPELP---IANFSSLYTLDLSYNEFDNTL 275
+L+ A S +N ELP + L LDLS+NEF L
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 121 GKINPSLLDLK-HLVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
G++ SL +L L+ L+LS+NNF LP + +L+ + L FTG IP L N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 179 LSNLQYLDLS 188
S L L LS
Sbjct: 417 CSELVSLHLS 426
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 139 SNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLS-NLQYLDLSSQ 190
S+NNF +LP+ L M L+ +DLS EF+G +P L NLS +L LDLSS
Sbjct: 326 SSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
L G I + + +L L L +N+ +P +G + L +DLS + G IP +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 179 LSNLQYLDLSSQ 190
L+ L +DLS+
Sbjct: 703 LTMLTEIDLSNN 714
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 50 EREALLRFKQDLKDPANRLALWS-DGNCCTWAGVVCND 86
E L+ FK L D N L WS + N CT+ GV C D
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD 49
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
L G+I L + +L ++ LSNN ++P ++G + +L + LS F+G IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 179 LSNLQYLDLSSQI 191
+L +LDL++ +
Sbjct: 534 CRSLIWLDLNTNL 546
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 42/194 (21%)
Query: 99 PFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL 158
P L + L++ + + GKI P+L + LV L LS N+ +P LGS+ L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS-FNYLSGTIPSSLGSLSKL 441
Query: 159 RHIDLSRAEFTGMIPYQLGNLSNLQYL-----DLSSQIPLSFLYXXXXXXXXXXXXXXXX 213
R + L G IP +L + L+ L DL+ +IP
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP--------------------- 480
Query: 214 XXTGVDLSTASDWFLVTN------------MLPSLQVLKLSACSLHNSLPELPIANFSSL 261
+G+ T +W ++N L +L +LKLS S ++P + + SL
Sbjct: 481 --SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSL 537
Query: 262 YTLDLSYNEFDNTL 275
LDL+ N F+ T+
Sbjct: 538 IWLDLNTNLFNGTI 551
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 121 GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS 180
G +P+ + +++L++S N +P +GSM L ++L + +G IP ++G+L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 181 NLQYLDLSSQ 190
L LDLSS
Sbjct: 678 GLNILDLSSN 687
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 115 ETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL-GSMGSLRHIDLSRAEFTGMIP 173
+++ +G I P L LK L YL L+ N F ++P FL G+ +L +DLS F G +P
Sbjct: 252 SSNQFVGPIPP--LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 174 YQLG 177
G
Sbjct: 309 PFFG 312
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 117 SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL 176
++L G+I + L++L L+LSNN+F +P LG SL +DL+ F G IP +
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ- 190
+L +L++S+NNF +P FLG +L+H+D+S + +G + + L+ L++SS
Sbjct: 198 NLEFLDVSSNNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 191 ----IP---------LSFLYXXXXXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQ 237
IP LS TG+DLS + V S
Sbjct: 256 FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 238 VLKLSACSLHNSLPELP---IANFSSLYTLDLSYNEFDNTL 275
+L+ A S +N ELP + L LDLS+NEF L
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 121 GKINPSLLDLK-HLVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
G++ SL +L L+ L+LS+NNF LP + +L+ + L FTG IP L N
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 179 LSNLQYLDLS 188
S L L LS
Sbjct: 414 CSELVSLHLS 423
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 139 SNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLS-NLQYLDLSSQ 190
S+NNF +LP+ L M L+ +DLS EF+G +P L NLS +L LDLSS
Sbjct: 323 SSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 119 LIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN 178
L G I + + +L L L +N+ +P +G + L +DLS + G IP +
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 179 LSNLQYLDLSSQ 190
L+ L +DLS+
Sbjct: 700 LTMLTEIDLSNN 711
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 50 EREALLRFKQDLKDPANRLALWS-DGNCCTWAGVVCND 86
E L+ FK L D N L WS + N CT+ GV C D
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRD 46
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189
L L L+++ N+F++ LP + +L +DLS+ + + P +LS+LQ L+++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
L L L+++ N+F++ LP + +L +DLS+ + + P +LS+LQ L++S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 33/130 (25%)
Query: 142 NFEKAQLPV-FLGSMGSLRHIDLSR--AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYX 198
N +K L V L +G+L+ +DLS E + QL NLS+LQ L+LS PL
Sbjct: 332 NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL--- 388
Query: 199 XXXXXXXXXXXXXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258
S F P L++L L+ LH + P+ P N
Sbjct: 389 ------------------------QSQAF---KECPQLELLDLAFTRLHINAPQSPFQNL 421
Query: 259 SSLYTLDLSY 268
L L+L+Y
Sbjct: 422 HFLQVLNLTY 431
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
L L L+++ N+F++ LP + +L +DLS+ + + P +LS+LQ L++S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188
L L L+++ N+F++ LP + +L +DLS+ + + P +LS+LQ L++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYLDLSS 189
L YL++S+N + + M SLRH+DLS +F + + + GNL+ L +L LS+
Sbjct: 102 LEYLDVSHNRLQN----ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 154 SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
S+GSL H+DLS + + G LS+L+YL+L
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 81 GVVCN-----DSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVY 135
GV+ N D++G+V+ G H D +W +Y+D+++ +G S K LV
Sbjct: 40 GVIVNGTQFKDTSGNVIHAHGGGMLKHGDYYYWYGEYRDDSNLFLG---VSCYRSKDLVN 96
Query: 136 LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE 167
E + P L H ++ R +
Sbjct: 97 WEYRGEVLSRNSAP-------ELNHCNIERPK 121
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 154 SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187
S+GSL H+DLS + + G LS+L+YL+L
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI---PYQLGNLSNLQ 183
+ +L +L L+LS+N LP LGS L++ F M+ P++ GNL NLQ
Sbjct: 266 IKNLSNLRVLDLSHNRL--TSLPAELGSCFQLKYFYF----FDNMVTTLPWEFGNLCNLQ 319
Query: 184 YL 185
+L
Sbjct: 320 FL 321
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 32/119 (26%)
Query: 152 LGSMGSLRHIDLSRA--EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYXXXXXXXXXXXX 209
L + +L+ +DLS + E + QL NL +LQYL+LS PL
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL---------------- 388
Query: 210 XXXXXXTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY 268
G++ + P L++L ++ LH P P N L L+LS+
Sbjct: 389 -------GLEDQAFKEC-------PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 152 LGSMGSLRHIDLSR--AEFTGMIPYQLGNLSNLQYLDLSSQIPLSF 195
L ++ +LR +DLS E + QL NLS+LQ L+LS PLS
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 254 PIANFSSLYTLDLSYNEFD 272
PIAN + LY+L L+YN+ +
Sbjct: 172 PIANLTDLYSLSLNYNQIE 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,015,601
Number of Sequences: 62578
Number of extensions: 318729
Number of successful extensions: 733
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 624
Number of HSP's gapped (non-prelim): 101
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)