Query 041140
Match_columns 275
No_of_seqs 284 out of 3337
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.5E-28 2.1E-32 237.0 18.1 220 47-274 27-275 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.1E-20 2.3E-25 187.0 11.8 158 108-273 141-298 (968)
3 PLN03150 hypothetical protein; 99.7 1.9E-16 4E-21 149.0 13.8 153 44-221 367-528 (623)
4 KOG0617 Ras suppressor protein 99.7 6.9E-19 1.5E-23 134.7 -3.7 151 109-272 35-186 (264)
5 KOG4194 Membrane glycoprotein 99.6 1.5E-16 3.3E-21 141.8 2.8 180 88-272 124-330 (873)
6 KOG4194 Membrane glycoprotein 99.6 1.2E-16 2.5E-21 142.5 1.2 172 90-269 150-351 (873)
7 KOG0444 Cytoskeletal regulator 99.5 6.5E-16 1.4E-20 139.0 0.4 155 108-272 79-258 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 4.6E-16 9.9E-21 140.0 -2.7 45 148-193 214-258 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 8.8E-16 1.9E-20 131.6 -6.1 151 109-271 139-309 (565)
10 KOG0617 Ras suppressor protein 99.5 2.8E-15 6.1E-20 115.0 -2.8 134 127-271 29-162 (264)
11 PRK15387 E3 ubiquitin-protein 99.4 6.3E-13 1.4E-17 126.1 10.2 158 91-274 284-460 (788)
12 cd00116 LRR_RI Leucine-rich re 99.4 5.6E-14 1.2E-18 122.0 2.4 186 88-273 80-292 (319)
13 cd00116 LRR_RI Leucine-rich re 99.4 8.7E-14 1.9E-18 120.8 2.8 184 89-272 51-263 (319)
14 PRK15370 E3 ubiquitin-protein 99.4 7.4E-12 1.6E-16 119.3 14.0 160 92-272 181-359 (754)
15 KOG4237 Extracellular matrix p 99.4 3E-14 6.6E-19 121.9 -2.4 180 89-272 67-335 (498)
16 PRK15370 E3 ubiquitin-protein 99.4 2.9E-12 6.3E-17 122.0 10.5 165 89-273 199-381 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 5.5E-12 1.2E-16 119.8 11.6 52 90-145 223-276 (788)
18 KOG0472 Leucine-rich repeat pr 99.3 2.4E-13 5.2E-18 116.8 0.0 148 90-247 389-541 (565)
19 KOG0618 Serine/threonine phosp 99.3 1.9E-13 4.1E-18 127.8 -1.4 169 89-269 310-510 (1081)
20 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.5E-18 122.4 -2.8 169 90-274 76-249 (722)
21 PLN03210 Resistant to P. syrin 99.3 4.7E-11 1E-15 120.1 13.8 80 108-190 635-714 (1153)
22 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-12 5.8E-17 101.2 2.6 86 130-222 41-127 (175)
23 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.7E-16 107.8 7.0 170 89-273 116-291 (394)
24 PLN03150 hypothetical protein; 99.2 9.7E-11 2.1E-15 110.6 9.4 107 133-246 420-527 (623)
25 PLN03210 Resistant to P. syrin 99.1 5.7E-10 1.2E-14 112.4 13.9 127 130-270 777-904 (1153)
26 KOG0618 Serine/threonine phosp 99.1 5.8E-12 1.3E-16 118.0 -0.3 130 129-270 357-487 (1081)
27 KOG1259 Nischarin, modulator o 99.1 3.3E-12 7.1E-17 106.3 -2.4 136 126-274 279-414 (490)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.1E-10 2.4E-15 92.0 5.0 130 127-267 15-148 (175)
29 KOG4237 Extracellular matrix p 99.0 2E-11 4.3E-16 104.9 -1.7 163 107-272 67-311 (498)
30 KOG3207 Beta-tubulin folding c 99.0 6.7E-11 1.5E-15 102.8 0.9 182 89-273 146-340 (505)
31 KOG1259 Nischarin, modulator o 99.0 3.6E-11 7.9E-16 100.2 -0.9 130 108-249 285-414 (490)
32 COG4886 Leucine-rich repeat (L 98.9 4.3E-10 9.4E-15 100.8 3.4 167 93-273 97-269 (394)
33 KOG0532 Leucine-rich repeat (L 98.9 2.5E-11 5.4E-16 108.6 -5.6 147 110-272 78-224 (722)
34 KOG3207 Beta-tubulin folding c 98.9 4.2E-10 9E-15 98.0 -0.1 178 89-272 121-314 (505)
35 KOG1909 Ran GTPase-activating 98.8 6.4E-10 1.4E-14 94.3 0.5 146 127-272 88-283 (382)
36 PF13855 LRR_8: Leucine rich r 98.8 2.8E-09 6.1E-14 69.3 2.2 61 208-271 1-61 (61)
37 KOG1909 Ran GTPase-activating 98.7 2E-09 4.4E-14 91.3 0.5 183 89-271 92-310 (382)
38 PF13855 LRR_8: Leucine rich r 98.7 4.6E-09 9.9E-14 68.3 1.7 58 132-190 2-59 (61)
39 KOG1859 Leucine-rich repeat pr 98.6 4.9E-10 1.1E-14 103.1 -7.9 126 133-271 166-291 (1096)
40 PF08263 LRRNT_2: Leucine rich 98.6 1.1E-07 2.5E-12 56.9 4.7 38 48-85 2-43 (43)
41 KOG4658 Apoptotic ATPase [Sign 98.5 1.1E-07 2.4E-12 92.6 5.8 177 90-272 524-730 (889)
42 KOG1859 Leucine-rich repeat pr 98.4 2.5E-09 5.5E-14 98.5 -7.2 128 108-248 165-293 (1096)
43 KOG0531 Protein phosphatase 1, 98.4 6E-08 1.3E-12 87.6 -0.8 148 109-272 74-221 (414)
44 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.5E-13 85.3 -5.2 159 108-269 211-373 (419)
45 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.5E-12 85.8 -0.5 165 91-272 74-245 (414)
46 KOG2120 SCF ubiquitin ligase, 98.2 1.5E-08 3.3E-13 84.6 -6.9 136 132-270 186-349 (419)
47 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.8E-11 67.5 5.2 84 132-222 43-127 (233)
48 PF12799 LRR_4: Leucine Rich r 98.2 2.1E-06 4.6E-11 51.6 3.6 36 132-169 2-37 (44)
49 COG5238 RNA1 Ran GTPase-activa 98.2 1.6E-06 3.4E-11 71.9 3.4 148 126-274 87-287 (388)
50 KOG2982 Uncharacterized conser 98.1 2.9E-07 6.4E-12 77.0 -1.4 59 206-265 222-285 (418)
51 KOG3665 ZYG-1-like serine/thre 98.1 6.1E-07 1.3E-11 85.3 -0.0 137 108-249 123-265 (699)
52 KOG4658 Apoptotic ATPase [Sign 98.1 2.4E-06 5.3E-11 83.3 3.7 101 89-191 545-653 (889)
53 PF12799 LRR_4: Leucine Rich r 98.1 4.9E-06 1.1E-10 50.0 3.6 37 156-193 1-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 7E-07 1.5E-11 66.6 -2.5 90 127-224 49-139 (177)
55 KOG1644 U2-associated snRNP A' 97.9 1.3E-05 2.7E-10 63.7 4.1 123 92-219 22-151 (233)
56 COG5238 RNA1 Ran GTPase-activa 97.9 6.6E-06 1.4E-10 68.3 2.4 169 89-272 30-227 (388)
57 KOG3665 ZYG-1-like serine/thre 97.9 8.5E-06 1.8E-10 77.6 3.3 136 131-274 122-265 (699)
58 KOG2982 Uncharacterized conser 97.8 3.5E-06 7.5E-11 70.7 -0.1 163 110-274 74-264 (418)
59 KOG2739 Leucine-rich acidic nu 97.8 1.3E-05 2.9E-10 66.0 2.5 106 129-240 41-149 (260)
60 KOG4579 Leucine-rich repeat (L 97.7 2.1E-06 4.6E-11 64.1 -2.8 84 88-193 52-136 (177)
61 PRK15386 type III secretion pr 97.6 0.00029 6.2E-09 62.7 8.3 68 108-190 53-122 (426)
62 KOG2739 Leucine-rich acidic nu 97.4 3.1E-05 6.7E-10 63.8 -0.2 108 152-266 39-150 (260)
63 PRK15386 type III secretion pr 97.2 0.0015 3.3E-08 58.2 8.2 127 91-244 54-187 (426)
64 KOG2123 Uncharacterized conser 97.2 1.9E-05 4.2E-10 65.8 -4.0 85 130-222 18-102 (388)
65 KOG2123 Uncharacterized conser 96.8 5.5E-05 1.2E-09 63.1 -4.6 58 129-190 39-98 (388)
66 PF13306 LRR_5: Leucine rich r 96.1 0.018 3.9E-07 42.6 5.8 122 126-262 7-129 (129)
67 PF00560 LRR_1: Leucine Rich R 95.7 0.0034 7.4E-08 31.4 0.3 18 158-176 2-19 (22)
68 PF00560 LRR_1: Leucine Rich R 94.7 0.0082 1.8E-07 30.0 -0.1 21 132-154 1-21 (22)
69 KOG4308 LRR-containing protein 94.4 0.00041 8.8E-09 63.6 -9.2 183 91-273 89-304 (478)
70 KOG4308 LRR-containing protein 94.3 0.00027 5.9E-09 64.7 -10.7 165 109-273 89-276 (478)
71 PF13306 LRR_5: Leucine rich r 94.1 0.13 2.8E-06 38.0 5.3 107 151-269 7-113 (129)
72 KOG1947 Leucine rich repeat pr 94.0 0.019 4E-07 52.5 0.7 132 130-266 187-328 (482)
73 KOG1947 Leucine rich repeat pr 93.4 0.018 3.8E-07 52.7 -0.6 14 207-220 294-307 (482)
74 PF13504 LRR_7: Leucine rich r 92.6 0.077 1.7E-06 24.6 1.2 13 132-144 2-14 (17)
75 KOG0473 Leucine-rich repeat pr 91.2 0.0057 1.2E-07 50.1 -5.9 82 88-191 41-122 (326)
76 KOG3864 Uncharacterized conser 90.0 0.035 7.7E-07 44.5 -2.3 83 156-244 101-186 (221)
77 PF13516 LRR_6: Leucine Rich r 89.6 0.13 2.9E-06 26.0 0.4 15 259-273 2-16 (24)
78 smart00369 LRR_TYP Leucine-ric 89.1 0.48 1.1E-05 24.3 2.4 15 131-145 2-16 (26)
79 smart00370 LRR Leucine-rich re 89.1 0.48 1.1E-05 24.3 2.4 15 131-145 2-16 (26)
80 KOG0473 Leucine-rich repeat pr 88.8 0.0089 1.9E-07 49.0 -6.5 90 126-223 37-126 (326)
81 KOG4341 F-box protein containi 88.5 0.16 3.4E-06 45.2 0.4 65 205-269 369-436 (483)
82 smart00365 LRR_SD22 Leucine-ri 81.9 1.2 2.7E-05 23.1 1.7 14 259-272 2-15 (26)
83 smart00368 LRR_RI Leucine rich 80.8 1.3 2.8E-05 23.3 1.6 14 259-272 2-15 (28)
84 KOG3763 mRNA export factor TAP 77.8 0.8 1.7E-05 42.3 0.3 64 155-223 217-285 (585)
85 KOG4341 F-box protein containi 77.0 1.5 3.3E-05 39.2 1.8 134 130-264 319-457 (483)
86 smart00364 LRR_BAC Leucine-ric 74.1 2.4 5.1E-05 22.1 1.3 14 132-145 3-16 (26)
87 KOG3864 Uncharacterized conser 73.3 0.52 1.1E-05 38.0 -1.8 83 131-218 101-186 (221)
88 KOG3763 mRNA export factor TAP 67.8 3.2 7E-05 38.5 1.7 68 178-249 216-285 (585)
89 KOG4242 Predicted myosin-I-bin 48.5 51 0.0011 30.4 5.8 104 88-192 164-280 (553)
90 smart00367 LRR_CC Leucine-rich 41.8 19 0.0004 18.3 1.3 13 258-270 1-13 (26)
91 TIGR00864 PCC polycystin catio 26.3 50 0.0011 37.1 2.5 33 113-145 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=9.5e-28 Score=237.00 Aligned_cols=220 Identities=30% Similarity=0.449 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCc------cccccccCCCCcc
Q 041140 47 IQSEREALLRFKQDLKDPANRLALW-SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP------FWLEDYKDETSKL 119 (275)
Q Consensus 47 ~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l 119 (275)
.++|+.+|.+||+++.+|...+.+| ...+||.|.||+|++ .++|+.|+++++.+.+... ..|+.|++++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 4589999999999998787778899 567899999999986 5799999999988765322 3567777788877
Q ss_pred eeecCcccc-CCCCCCEEECCCCCCCCC---------------------CcchhhhCCccCCEEECCCCCCCCCCccccc
Q 041140 120 IGKINPSLL-DLKHLVYLELSNNNFEKA---------------------QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG 177 (275)
Q Consensus 120 ~~~lp~~l~-~l~~L~~L~Ls~n~l~~~---------------------~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~ 177 (275)
+|.+|..+. .+++|++|++++|.+++. .+|..++.+++|++|++++|.+.+.+|..++
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 777776544 566666666666655543 1455555555666666666655555555555
Q ss_pred CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 257 (275)
Q Consensus 178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 257 (275)
++++|++|++++|.+.+..|.. ++++++|+.|++++|.+++. .+..++.+++|++|++++|.+++. .|..++.
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~ 258 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGN 258 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChH----HcCcCCccEEECcCCccCCc--CChhHhcCCCCCEEECcCceeccc-cChhHhC
Confidence 6666666666665555444444 56666666666666666654 233556666777777777766665 4446667
Q ss_pred CCCcCEEecccCcCcee
Q 041140 258 FSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 258 l~~L~~L~L~~N~l~g~ 274 (275)
+++|++|++++|.++|.
T Consensus 259 l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCCCEEECcCCeeecc
Confidence 77777777777766653
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=1.1e-20 Score=187.02 Aligned_cols=158 Identities=27% Similarity=0.334 Sum_probs=108.9
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.|+.|++++|.+.+.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++|++
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 466677777777777777788888888888888888776 7778888888888888888888777888888888888888
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+..|.. ++++++|++|++++|.+++.. +..++.+++|++|++++|++.+. .|..+..+++|++|+++
T Consensus 220 ~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 220 GYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLS 292 (968)
T ss_pred cCCccCCcCChh----HhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECc
Confidence 887776655554 666677777777777666542 23455555666666666655554 33345555555555555
Q ss_pred cCcCce
Q 041140 268 YNEFDN 273 (275)
Q Consensus 268 ~N~l~g 273 (275)
+|.++|
T Consensus 293 ~n~l~~ 298 (968)
T PLN00113 293 DNSLSG 298 (968)
T ss_pred CCeecc
Confidence 555544
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.70 E-value=1.9e-16 Score=149.03 Aligned_cols=153 Identities=30% Similarity=0.424 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc----ccCceEecCCC----CcEEEEEcCCCCCCCCCccccccccCC
Q 041140 44 IGCIQSEREALLRFKQDLKDPANRLALWSDGNCC----TWAGVVCNDST----GHVLELRLGNPFLHDDEPFWLEDYKDE 115 (275)
Q Consensus 44 ~~~~~~~~~~L~~~~~~~~~~~~~~~~W~~~~~c----~w~gv~c~~~~----~~v~~l~l~~~~~~~l~~~~L~~l~l~ 115 (275)
..+.++|.++|..+|+++..+.. .+|.+..|+ .|.|+.|.... .+|+.|+|+++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n---------------- 428 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ---------------- 428 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC----------------
Confidence 45667899999999999865432 479664443 79999995321 24777887776
Q ss_pred CCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCc
Q 041140 116 TSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF 195 (275)
Q Consensus 116 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 195 (275)
++.|.+|..++.+++|+.|+|++|.+.+. +|..++.+++|++|++++|+++|.+|..++.+++|++|++++|.+.+.
T Consensus 429 --~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 429 --GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred --CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence 88889999999999999999999999887 888899999999999999999999999999999999999999988887
Q ss_pred ccccccccccC-CCCCCeeeccCCCCC
Q 041140 196 LYLENLSWLSG-LSLLKHLDLTGVDLS 221 (275)
Q Consensus 196 ~~~~~l~~l~~-l~~L~~L~L~~n~l~ 221 (275)
.|.. +.. ..++..+++.+|...
T Consensus 506 iP~~----l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 506 VPAA----LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CChH----HhhccccCceEEecCCccc
Confidence 7765 443 245667777777543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=6.9e-19 Score=134.72 Aligned_cols=151 Identities=25% Similarity=0.349 Sum_probs=125.2
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
++.|.+++|.++ .+|+.++.+.+|+.|++++|+++. +|..++.+++|++|+++.|++. .+|..|+.+|.|+.||+.
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 444555666886 567778999999999999999987 8999999999999999999998 789999999999999998
Q ss_pred cCCCCC-cccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 189 SQIPLS-FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 189 ~n~~~~-~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
.|.+.. ..|.. +..+..|+.|+++.|.+.-.|. .++++++|+.|.+..|.+-. .|..++.+..|+.|.+.
T Consensus 111 ynnl~e~~lpgn----ff~m~tlralyl~dndfe~lp~---dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 111 YNNLNENSLPGN----FFYMTTLRALYLGDNDFEILPP---DVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQ 181 (264)
T ss_pred ccccccccCCcc----hhHHHHHHHHHhcCCCcccCCh---hhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcc
Confidence 886543 44555 7778889999999998888754 77889999999999998876 45678889999999999
Q ss_pred cCcCc
Q 041140 268 YNEFD 272 (275)
Q Consensus 268 ~N~l~ 272 (275)
+|.++
T Consensus 182 gnrl~ 186 (264)
T KOG0617|consen 182 GNRLT 186 (264)
T ss_pred cceee
Confidence 98875
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-16 Score=141.83 Aligned_cols=180 Identities=24% Similarity=0.227 Sum_probs=101.2
Q ss_pred CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEE
Q 041140 88 TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHI 161 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L 161 (275)
.++++.++|.+|.|..... ..++++|++.|.++..--+++..-.++++|+|++|.|+.. -...|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-ccccccccchheee
Confidence 4789999999998876433 2455666666666533333454555666666666666654 33455566666666
Q ss_pred ECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCccccc--------cc------------ccccCCCCCCeeeccCCCC
Q 041140 162 DLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLE--------NL------------SWLSGLSLLKHLDLTGVDL 220 (275)
Q Consensus 162 ~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~--------~l------------~~l~~l~~L~~L~L~~n~l 220 (275)
.|+.|+++ .+|. .|.++++|+.|+|..|++.-..-.. .+ ..|..+.++++|+|..|++
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 66666666 3443 4445666666666666443110000 00 0134445555555555555
Q ss_pred CCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 221 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+... -+++-.++.|++|++++|.|... ..+.++.+++|+.|+|++|+|+
T Consensus 282 ~~vn--~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 282 QAVN--EGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhh--cccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccc
Confidence 5442 12344556666666666666554 4445555666666666666654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-16 Score=142.51 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140 90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 163 (275)
.+..+||+.|.|+.++. .+++.|++++|.++..--..|..+.+|.+|.|++|.++.. .+..|.++++|+.|+|
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhc
Confidence 35666777666655432 3566666666666655555566666666666666666653 3334555666666666
Q ss_pred CCCCCCC------------------------CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC
Q 041140 164 SRAEFTG------------------------MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD 219 (275)
Q Consensus 164 ~~n~l~~------------------------~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~ 219 (275)
..|++.- .-...|..|.++++|+|+.|++....... +.+++.|++|+++.|.
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNA 304 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc----ccccchhhhhccchhh
Confidence 6665431 11112334445555555555443222222 5566666666666666
Q ss_pred CCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 220 LSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 220 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
+.... ...|...++|+.|+|++|+++.. ++..|..+..|+.|+|+.|
T Consensus 305 I~rih--~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 305 IQRIH--IDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred hheee--cchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhccccc
Confidence 66652 23555566666666666666654 4444444434444444433
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=6.5e-16 Score=139.02 Aligned_cols=155 Identities=26% Similarity=0.281 Sum_probs=101.7
Q ss_pred ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-cCCCCCCeE
Q 041140 108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYL 185 (275)
Q Consensus 108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~~l~~L~~L 185 (275)
.|+.+++.+|++. .-+|+.+..+..|+.||||+|++.. +|..+.+-+++-.|+|++|++. +||..+ -+++.|-+|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 4555666666665 3367777778888888888888876 7777777788888888888877 677643 477778888
Q ss_pred EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC-----Cc------------------hhhhhCCCCCCcEEecc
Q 041140 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA-----SD------------------WFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-----~~------------------~~~~~~~l~~L~~L~L~ 242 (275)
|||+|++... |.. +..+..|+.|.|++|.+... |+ +|..+..+.+|..+|++
T Consensus 156 DLS~NrLe~L-PPQ----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 156 DLSNNRLEML-PPQ----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred ccccchhhhc-CHH----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 8888876532 222 45555556666665533211 10 23344455567777777
Q ss_pred CCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 243 ACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
.|.+.. .|+.+..+++|+.|+||+|+|+
T Consensus 231 ~N~Lp~--vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 231 ENNLPI--VPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccCCCc--chHHHhhhhhhheeccCcCcee
Confidence 777754 4556777777777777777765
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=4.6e-16 Score=139.98 Aligned_cols=45 Identities=33% Similarity=0.507 Sum_probs=24.1
Q ss_pred cchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140 148 LPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 148 ~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
+|.++..+.+|..++++.|.+. .+|+.+.++++|+.|+||+|.++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 4444445555555555555554 45555555555555555555543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=8.8e-16 Score=131.58 Aligned_cols=151 Identities=29% Similarity=0.390 Sum_probs=74.8
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
++.++..+|++. .+|+.++.+..+..+++.+|.++. +|+..-+++.|++|+...|-+. .+|+.++.+.+|..|++.
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 333444444443 344445555555555555555554 3333333555555555555554 566666666666666666
Q ss_pred cCCCCCccccc--------------------ccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 189 SQIPLSFLYLE--------------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 189 ~n~~~~~~~~~--------------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
.|.+. +.| + .-....+++++..||+..|+++..|+ .+..+++|+.||+++|.+++
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd---e~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD---EICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch---HHHHhhhhhhhcccCCcccc
Confidence 66543 222 1 00012344555555555555555543 33444555555555555555
Q ss_pred CCCCcccCCCCCcCEEecccCcC
Q 041140 249 SLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
. |+ .++++ +|+.|-+.+|.+
T Consensus 290 L-p~-sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 290 L-PY-SLGNL-HLKFLALEGNPL 309 (565)
T ss_pred C-Cc-ccccc-eeeehhhcCCch
Confidence 3 22 45555 555555555543
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=2.8e-15 Score=115.00 Aligned_cols=134 Identities=21% Similarity=0.294 Sum_probs=119.1
Q ss_pred ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 206 (275)
+.++++++.|.+++|+++. +|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. ..|.. ++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg----fgs 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG----FGS 100 (264)
T ss_pred ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc----cCC
Confidence 6678899999999999998 8999999999999999999998 89999999999999999998765 45666 999
Q ss_pred CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140 207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
++.|+.||+++|++.... +++.+-.+..|+-|++++|.|.- .|..++++++|+.|.+.+|.+
T Consensus 101 ~p~levldltynnl~e~~-lpgnff~m~tlralyl~dndfe~--lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENS-LPGNFFYMTTLRALYLGDNDFEI--LPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred Cchhhhhhcccccccccc-CCcchhHHHHHHHHHhcCCCccc--CChhhhhhcceeEEeeccCch
Confidence 999999999999998874 45667778899999999999964 444799999999999999975
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=6.3e-13 Score=126.15 Aligned_cols=158 Identities=21% Similarity=0.146 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccC-----------------CCCCCEEECCCCCCCCCCcchh
Q 041140 91 VLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLD-----------------LKHLVYLELSNNNFEKAQLPVF 151 (275)
Q Consensus 91 v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~-----------------l~~L~~L~Ls~n~l~~~~~p~~ 151 (275)
+..|++++|.+..+.. ..|+.|++++|++++ +|..... ...|++|++++|+++. +|..
T Consensus 284 L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~--LP~l 360 (788)
T PRK15387 284 LCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS--LPTL 360 (788)
T ss_pred cCEEECcCCccccccccccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccCC--CCCC
Confidence 3344555555444322 357777777777765 3321111 0234455555555544 3322
Q ss_pred hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 231 (275)
..+|+.|++++|.++ .+|.. +.+|+.|++++|.+.+ .|. ..++|+.|++++|.+++.|..
T Consensus 361 ---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~-------l~s~L~~LdLS~N~LssIP~l----- 420 (788)
T PRK15387 361 ---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLTSLPML----- 420 (788)
T ss_pred ---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCC-------cccCCCEEEccCCcCCCCCcc-----
Confidence 123444555555554 34432 2456777777776653 221 124688888888888877632
Q ss_pred CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
..+|+.|++++|+++. .|..+..+++|+.|+|++|+|+|.
T Consensus 421 -~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 421 -PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred -hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCch
Confidence 2467889999999985 455788999999999999999985
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=5.6e-14 Score=122.04 Aligned_cols=186 Identities=25% Similarity=0.188 Sum_probs=130.9
Q ss_pred CCcEEEEEcCCCCCCCCCc---------cccccccCCCCccee----ecCccccCC-CCCCEEECCCCCCCCC---Ccch
Q 041140 88 TGHVLELRLGNPFLHDDEP---------FWLEDYKDETSKLIG----KINPSLLDL-KHLVYLELSNNNFEKA---QLPV 150 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~---------~~L~~l~l~~n~l~~----~lp~~l~~l-~~L~~L~Ls~n~l~~~---~~p~ 150 (275)
..+++.++++++.+..... ..|+.|++++|.+++ .+...+..+ ++|+.|++++|.+++. .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 3579999999988763211 238889999998873 333455666 8999999999999842 1444
Q ss_pred hhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--
Q 041140 151 FLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS-- 224 (275)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~-- 224 (275)
.+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.........+..+++|++|++++|.+++..
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 566778899999999998843 34455667899999999998764432222223667889999999999988641
Q ss_pred chhhhh-CCCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140 225 DWFLVT-NMLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 225 ~~~~~~-~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
.+...+ ...+.|++|++++|.+++.. ....+..+++|+.+++++|.++.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 111111 12478999999999987421 12345566889999999999874
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=8.7e-14 Score=120.82 Aligned_cols=184 Identities=23% Similarity=0.141 Sum_probs=127.7
Q ss_pred CcEEEEEcCCCCCCC--C----------CccccccccCCCCcceeecCccccCCCC---CCEEECCCCCCCCCC---cch
Q 041140 89 GHVLELRLGNPFLHD--D----------EPFWLEDYKDETSKLIGKINPSLLDLKH---LVYLELSNNNFEKAQ---LPV 150 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~--l----------~~~~L~~l~l~~n~l~~~lp~~l~~l~~---L~~L~Ls~n~l~~~~---~p~ 150 (275)
..++.++++++.+.. . ....|+.+++++|.+.+..+..+..+.. |++|++++|.+++.. +..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 447888888887662 0 1136788889999888766665555555 999999999887421 334
Q ss_pred hhhCC-ccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC-
Q 041140 151 FLGSM-GSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS- 224 (275)
Q Consensus 151 ~~~~l-~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~- 224 (275)
.+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+.........+..+++|++|++++|.+++..
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45666 8899999999998843 33456677889999999987764322111122455679999999999887652
Q ss_pred -chhhhhCCCCCCcEEeccCCcCCCCCCCcccC----CCCCcCEEecccCcCc
Q 041140 225 -DWFLVTNMLPSLQVLKLSACSLHNSLPELPIA----NFSSLYTLDLSYNEFD 272 (275)
Q Consensus 225 -~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~L~~N~l~ 272 (275)
.+...+..+++|++|++++|.+++..+..... ..+.|++|++++|.++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 23445677889999999999888631211111 2478999999999886
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=7.4e-12 Score=119.30 Aligned_cols=160 Identities=23% Similarity=0.245 Sum_probs=88.1
Q ss_pred EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140 92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168 (275)
Q Consensus 92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 168 (275)
+.++++++.+..++. ..++.|++++|.++ .+|..+. ++|++|++++|.++. +|..+. .+|+.|++++|.+
T Consensus 181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCcc
Confidence 344444444333322 24566666777666 3554433 467777777777665 555432 3566666666666
Q ss_pred CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhh-h----------h-----CC
Q 041140 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL-V----------T-----NM 232 (275)
Q Consensus 169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~-~----------~-----~~ 232 (275)
. .+|..+. .+|++|++++|.+.. .|.. +. ++|+.|++++|++++.|.... . + ..
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~----l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKISC-LPEN----LP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL 323 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccCc-cccc----cC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence 5 5555442 356666666665542 2322 21 356666666666655432000 0 0 01
Q ss_pred CCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 233 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
.++|+.|++++|.+++. +. .+ .++|+.|++++|+|+
T Consensus 324 ~~sL~~L~Ls~N~Lt~L-P~-~l--~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 324 PPGLKTLEAGENALTSL-PA-SL--PPELQVLDVSKNQIT 359 (754)
T ss_pred cccceeccccCCccccC-Ch-hh--cCcccEEECCCCCCC
Confidence 24677777777777653 32 23 257888999888876
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=3e-14 Score=121.90 Aligned_cols=180 Identities=18% Similarity=0.143 Sum_probs=114.1
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRHI 161 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L 161 (275)
...++|.|..|.|..++. ..|+.+++++|+++..-|.+|.+++.|..|-+.+ |.|+.. ....|+.+..|+-|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHH
Confidence 568999999998887665 3678889999999888888888888887766555 888873 22345555555555
Q ss_pred ECCCCCCCCCCccc------------------------ccCCCCCCeEEcccCCCCCc----------------------
Q 041140 162 DLSRAEFTGMIPYQ------------------------LGNLSNLQYLDLSSQIPLSF---------------------- 195 (275)
Q Consensus 162 ~L~~n~l~~~lp~~------------------------l~~l~~L~~L~Ls~n~~~~~---------------------- 195 (275)
.+.-|++.-...+. +..+..++++.+..|.+...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 55555544322233 33444444444443331000
Q ss_pred ----------------------------------ccccc--cccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEE
Q 041140 196 ----------------------------------LYLEN--LSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVL 239 (275)
Q Consensus 196 ----------------------------------~~~~~--l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 239 (275)
.+... -..+.++++|+.|++++|.+++.. ..++.....+++|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~--~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE--DGAFEGAAELQEL 303 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh--hhhhcchhhhhhh
Confidence 00000 013677888888999998888873 3456666677777
Q ss_pred eccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 240 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
.|..|++... ....|..+..|+.|+|.+|+|+
T Consensus 304 ~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 304 YLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred hcCcchHHHH-HHHhhhccccceeeeecCCeeE
Confidence 7777766543 4445667777777777777765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.9e-12 Score=122.04 Aligned_cols=165 Identities=25% Similarity=0.277 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
..++.|++++|.+..++. .+|+.|++++|+++ .+|..+. ..|+.|++++|.+.. +|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECcC
Confidence 468889999998876543 47888899998887 4666543 468888888888875 776654 4788888888
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCccccccc-------------ccc--cCCCCCCeeeccCCCCCCCCchhhhh
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENL-------------SWL--SGLSLLKHLDLTGVDLSTASDWFLVT 230 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-------------~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~ 230 (275)
|++. .+|..+. ++|++|++++|.+... |.... ..+ .-.++|+.|++++|.+++.|. .+
T Consensus 272 N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~---~l 344 (754)
T PRK15370 272 NKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA---SL 344 (754)
T ss_pred CccC-ccccccC--CCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh---hh
Confidence 8887 5776553 5788888888876542 21100 000 112478888888888887753 22
Q ss_pred CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
.++|+.|++++|+++.. |. .+ .++|++|++++|+|++
T Consensus 345 --~~sL~~L~Ls~N~L~~L-P~-~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 345 --PPELQVLDVSKNQITVL-PE-TL--PPTITTLDVSRNALTN 381 (754)
T ss_pred --cCcccEEECCCCCCCcC-Ch-hh--cCCcCEEECCCCcCCC
Confidence 26899999999999853 33 33 3689999999999874
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=5.5e-12 Score=119.82 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCC
Q 041140 90 HVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEK 145 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~ 145 (275)
+++.|++.+|.+..++. ..|+.|++++|+++. +|.. .++|+.|++++|.++.
T Consensus 223 ~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 223 HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLTH 276 (788)
T ss_pred CCCEEEccCCcCCCCCCCCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchhh
Confidence 56677777777666544 366777777777663 4432 2344555555554443
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=2.4e-13 Score=116.80 Aligned_cols=148 Identities=26% Similarity=0.259 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 90 HVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
-|+.++++.|.+..++. .++.+.-+..|+..+.+|..++.++.|..|++++|.+.. +|.+++.+..||+|+++
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLS 466 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccc
Confidence 47888888886655443 122222233334445666667777777777777777776 77777777777777777
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
.|+|. .+|..+..+..++.+-.++|++....+.. +.+|.+|..||+.+|.+...|+ .++++.+|++|.+++|
T Consensus 467 ~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~----l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 467 FNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG----LKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGN 538 (565)
T ss_pred ccccc-cchHHHhhHHHHHHHHhccccccccChHH----hhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCC
Confidence 77776 67776666666666666666665444433 6677777777777777777653 6677777777777777
Q ss_pred cCC
Q 041140 245 SLH 247 (275)
Q Consensus 245 ~l~ 247 (275)
.|.
T Consensus 539 pfr 541 (565)
T KOG0472|consen 539 PFR 541 (565)
T ss_pred ccC
Confidence 776
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=1.9e-13 Score=127.76 Aligned_cols=169 Identities=27% Similarity=0.298 Sum_probs=112.4
Q ss_pred CcEEEEEcCCCCCCCCCcc-------------------------------ccccccCCCCcceeecCccccCCCCCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEPF-------------------------------WLEDYKDETSKLIGKINPSLLDLKHLVYLE 137 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~~-------------------------------~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~ 137 (275)
..+..|+|..|.+..++.. .|+.|++.+|.++...-+.+.++++|+.|+
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 4688999999887664331 233456677777776666677778888888
Q ss_pred CCCCCCCCCCcch-hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeecc
Q 041140 138 LSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLT 216 (275)
Q Consensus 138 Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~ 216 (275)
|++|.+.. +|. .+.++..|+.|++++|++. .+|..+.+++.|++|...+|.+. ..| + +..+++|+.+|++
T Consensus 390 LsyNrL~~--fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e----~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 390 LSYNRLNS--FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E----LAQLPQLKVLDLS 460 (1081)
T ss_pred eccccccc--CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h----hhhcCcceEEecc
Confidence 88887776 443 5667777888888888877 67777777888888877777665 233 3 6777788888888
Q ss_pred CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
.|+++... ++.. -..++|++||+++|.-... ....+..+.++...++.-|
T Consensus 461 ~N~L~~~~-l~~~-~p~p~LkyLdlSGN~~l~~-d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 461 CNNLSEVT-LPEA-LPSPNLKYLDLSGNTRLVF-DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cchhhhhh-hhhh-CCCcccceeeccCCccccc-chhhhHHhhhhhheecccC
Confidence 88777652 1111 1226788888887753221 2334555556655555544
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.6e-13 Score=122.36 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=142.3
Q ss_pred cEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 90 HVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
..+..|++.|.+..++. ..|+.+.+..|.+. .+|+.++++..|++++++.|+++. +|..++.++ |+.|.++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEe
Confidence 35667788887776544 35677777777774 688899999999999999999998 898898887 8999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|++. .+|+.++....|..||.+.|.+.. .|.. ++++.+|+.|++..|++...|+ .+..+ .|..||++.|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsq----l~~l~slr~l~vrRn~l~~lp~---El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQ----LGYLTSLRDLNVRRNHLEDLPE---ELCSL-PLIRLDFSCN 221 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhhh-chHH----hhhHHHHHHHHHhhhhhhhCCH---HHhCC-ceeeeecccC
Confidence 99998 899999999999999999998763 3444 8999999999999999998864 55555 5889999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+++. +|..|.++++|++|-|.+|.++.+
T Consensus 222 kis~--iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 222 KISY--LPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred ceee--cchhhhhhhhheeeeeccCCCCCC
Confidence 9986 566899999999999999998753
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.28 E-value=4.7e-11 Score=120.10 Aligned_cols=80 Identities=29% Similarity=0.311 Sum_probs=42.3
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
+|+.++++++...+.+|. ++.+++|++|++++|..-.. +|..+.++++|++|++++|...+.+|..+ ++++|++|++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 344555555444444443 45555666666655543333 55566666666666666554444555443 4555555555
Q ss_pred ccC
Q 041140 188 SSQ 190 (275)
Q Consensus 188 s~n 190 (275)
++|
T Consensus 712 sgc 714 (1153)
T PLN03210 712 SGC 714 (1153)
T ss_pred CCC
Confidence 554
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=2.7e-12 Score=101.17 Aligned_cols=86 Identities=37% Similarity=0.390 Sum_probs=22.4
Q ss_pred CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-cCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS 208 (275)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~ 208 (275)
+.+|+.|++++|.++. ++ .+..+++|++|++++|+++ .+.+.+ ..+++|++|++++|.+..... +..+..++
T Consensus 41 l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~ 113 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNE---LEPLSSLP 113 (175)
T ss_dssp -TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCC---CGGGGG-T
T ss_pred hcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHH---hHHHHcCC
Confidence 4444555555555444 21 2344445555555555554 232222 234445555555554432211 11234444
Q ss_pred CCCeeeccCCCCCC
Q 041140 209 LLKHLDLTGVDLST 222 (275)
Q Consensus 209 ~L~~L~L~~n~l~~ 222 (275)
+|+.|++.+|.++.
T Consensus 114 ~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 114 KLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE-TT-GGGG
T ss_pred CcceeeccCCcccc
Confidence 45555555444443
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=3.6e-11 Score=107.81 Aligned_cols=170 Identities=29% Similarity=0.403 Sum_probs=134.4
Q ss_pred CcEEEEEcCCCCCCCCCc----c--ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP----F--WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~--~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.+++.++.+.+++. . .|+.|++++|++. .+|..+..++.|+.|++++|.++. +|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 357888888888776554 3 6888899998886 455567889999999999999988 777776888999999
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 242 (275)
+++|++. .+|..+..+..|+++.+++|... ..+.. +.++.++..+.+.+|++...+. .++.+++++.|+++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~----~~~~~~l~~l~l~~n~~~~~~~---~~~~l~~l~~L~~s 263 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS----LSNLKNLSGLELSNNKLEDLPE---SIGNLSNLETLDLS 263 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh----hhhcccccccccCCceeeeccc---hhccccccceeccc
Confidence 9999998 78887767777999999988422 12222 6778888888888888877533 56778889999999
Q ss_pred CCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 243 ACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+|.++.. .. ++.+.+++.|++++|.++.
T Consensus 264 ~n~i~~i-~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 264 NNQISSI-SS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccc-cc--ccccCccCEEeccCccccc
Confidence 9999875 33 8889999999999998764
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=9.7e-11 Score=110.57 Aligned_cols=107 Identities=25% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~ 212 (275)
++.|+|++|.+++. +|..+..+++|++|+|++|.+.|.+|..++.+++|+.|++++|.+.+..|.. ++++++|+.
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES----LGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH----HhcCCCCCE
Confidence 55677777777766 7777777777777777777777777777777777777777777777666655 677777777
Q ss_pred eeccCCCCCCCCchhhhhCC-CCCCcEEeccCCcC
Q 041140 213 LDLTGVDLSTASDWFLVTNM-LPSLQVLKLSACSL 246 (275)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l 246 (275)
|++++|.++|.. +..++. ..++..+++.+|..
T Consensus 495 L~Ls~N~l~g~i--P~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGNSLSGRV--PAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCCcccccC--ChHHhhccccCceEEecCCcc
Confidence 777777777662 223332 23556667776653
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.14 E-value=5.7e-10 Score=112.38 Aligned_cols=127 Identities=23% Similarity=0.271 Sum_probs=93.6
Q ss_pred CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL 209 (275)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~ 209 (275)
.++|+.|++++|..... +|..++++++|++|++++|...+.+|..+ .+++|++|++++|......|. ...+
T Consensus 777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------ISTN 847 (1153)
T ss_pred cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-------cccc
Confidence 35677788887766555 88888888888888888876555777765 678888888888744322221 2357
Q ss_pred CCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC-cCCCCCCCcccCCCCCcCEEecccCc
Q 041140 210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC-SLHNSLPELPIANFSSLYTLDLSYNE 270 (275)
Q Consensus 210 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~N~ 270 (275)
|+.|++++|.++..|. .+..+++|+.|++++| ++.. .+..+..+++|+.++++++.
T Consensus 848 L~~L~Ls~n~i~~iP~---si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPW---WIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCccChH---HHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCc
Confidence 8899999999887753 6788999999999986 4544 33367788888888888764
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.14 E-value=5.8e-12 Score=118.00 Aligned_cols=130 Identities=27% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCcccccccccccCC
Q 041140 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGL 207 (275)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l 207 (275)
.++.|+.|.+.+|.+++. .-+.+.++++|+.|+|++|++. .+|. .+.+++.|++|+||+|++. ..|.+ +..+
T Consensus 357 ~~~~Lq~LylanN~Ltd~-c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~t----va~~ 429 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDS-CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDT----VANL 429 (1081)
T ss_pred hhHHHHHHHHhcCccccc-chhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHH----HHhh
Confidence 356677777777777776 4455667777777777777776 5565 5567777777777777765 33444 6677
Q ss_pred CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140 208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270 (275)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~ 270 (275)
+.|+.|...+|++...| .+..++.|+.+|++.|+++....+... -.++|++||+++|.
T Consensus 430 ~~L~tL~ahsN~l~~fP----e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFP----ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCceeech----hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 77777777777777765 455677777777777777665333222 22677777777775
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=3.3e-12 Score=106.31 Aligned_cols=136 Identities=27% Similarity=0.242 Sum_probs=107.6
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
.+.-...|+++|+++|.|+. +.++..-.++++.|++++|.+. .+ ..+..+++|+.||+++|.+...... -.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gw-----h~ 349 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGW-----HL 349 (490)
T ss_pred ecchHhhhhhccccccchhh--hhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhh-----Hh
Confidence 34445789999999999987 7888888999999999999987 33 4488899999999999976532111 24
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
++.+++.|.++.|.+.... .++++-+|..||+++|+|...-.-..++++|-|+++.|.+|++.+.
T Consensus 350 KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhcCEeeeehhhhhHhhhh----hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 5678889999999887653 5677889999999999987542335689999999999999998764
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.1e-10 Score=92.05 Aligned_cols=130 Identities=27% Similarity=0.291 Sum_probs=55.0
Q ss_pred ccCCCCCCEEECCCCCCCCCCcchhhh-CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
+.+...+++|+|++|.|+. +. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|.+....+.- ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l----~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGL----DK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHH----HH
T ss_pred ccccccccccccccccccc--cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccch----HH
Confidence 4566678999999999987 33 455 5789999999999998 454 5788999999999999987543211 24
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEecc
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLS 267 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~ 267 (275)
.+++|++|++++|++....+ ...+..+++|+.|++.+|.++.. .. ..+..+|+|+.||-.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-TT--EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred hCCcCCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 68999999999999988754 45677899999999999999865 22 246788999999754
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=2e-11 Score=104.87 Aligned_cols=163 Identities=21% Similarity=0.205 Sum_probs=113.1
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC-CCCCCCCcc-cccCCCCCCe
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPY-QLGNLSNLQY 184 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~-~l~~l~~L~~ 184 (275)
.+...+++..|+++...|.+|..+++|+.|||++|+|+.+ -|..|..+++|.+|-+.+ |+|+ .+|. .|+++..++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 4556678899999877777899999999999999999998 899999999988887766 8998 5665 6777877777
Q ss_pred EEcccCCCCCccccc---------------cc-----ccccCCCCCCeeeccCCCCCCC---C-----------------
Q 041140 185 LDLSSQIPLSFLYLE---------------NL-----SWLSGLSLLKHLDLTGVDLSTA---S----------------- 224 (275)
Q Consensus 185 L~Ls~n~~~~~~~~~---------------~l-----~~l~~l~~L~~L~L~~n~l~~~---~----------------- 224 (275)
|.+.-|.+.-..... .. ..+..+..++.+.+..|.+... +
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 777666543211111 00 0133333444444443331100 0
Q ss_pred ---c-------------------------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140 225 ---D-------------------------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 264 (275)
Q Consensus 225 ---~-------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 264 (275)
+ -...++++++|+.|+|++|++++. .+.+|....+++.|
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-hhhhhcchhhhhhh
Confidence 0 023467788888888888888876 66678888888888
Q ss_pred ecccCcCc
Q 041140 265 DLSYNEFD 272 (275)
Q Consensus 265 ~L~~N~l~ 272 (275)
.|..|+|.
T Consensus 304 ~L~~N~l~ 311 (498)
T KOG4237|consen 304 YLTRNKLE 311 (498)
T ss_pred hcCcchHH
Confidence 88888763
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.7e-11 Score=102.80 Aligned_cols=182 Identities=22% Similarity=0.218 Sum_probs=120.0
Q ss_pred CcEEEEEcCCCCCCCCC--------ccccccccCCCCcceeecCcc-ccCCCCCCEEECCCCCCCCCCcchhhhCCccCC
Q 041140 89 GHVLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKINPS-LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLR 159 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~ 159 (275)
..|+.+||+.|-|.... ..+|+.|+++.|.+.-..... -..+++|+.|.++.|.++...+-.....+++|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 45788888888766532 246778888888876433332 235678888888888887654555666788888
Q ss_pred EEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--c--hhhhhCCCCC
Q 041140 160 HIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS--D--WFLVTNMLPS 235 (275)
Q Consensus 160 ~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~--~--~~~~~~~l~~ 235 (275)
.|++..|..-+.-......+..|+.|||++|.+-...... ..+.++.|+.|+++.+.+.... + .......+++
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 8888888532222223345677888888888765443222 2677888888888888877652 1 0111345788
Q ss_pred CcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 236 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
|++|++..|++.+.-.-..+..+++|+.|.+..|.|+-
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 99999999988765222345556677888877777753
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=3.6e-11 Score=100.16 Aligned_cols=130 Identities=25% Similarity=0.220 Sum_probs=108.7
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.|+.+++++|.++ .+.+++.-++.++.|++++|.+... ..+..+.+|+.||+++|.++ .+...-.++.+++.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 5777999999886 6777888889999999999999873 34888999999999999998 45444457788999999
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
++|.+. .+..+.++-+|..||+.+|++..... ...++++|.|+++.|.+|.+.+.
T Consensus 360 a~N~iE------~LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIE------TLSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHh------hhhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcccc
Confidence 999764 23337888999999999999998753 55789999999999999999874
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=4.3e-10 Score=100.79 Aligned_cols=167 Identities=33% Similarity=0.365 Sum_probs=128.4
Q ss_pred EEEcCCCCC-CCCCc----cccccccCCCCcceeecCccccCCC-CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 93 ELRLGNPFL-HDDEP----FWLEDYKDETSKLIGKINPSLLDLK-HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 93 ~l~l~~~~~-~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
.+++..+.+ .+... ..++.+++.+|.++ .+++....+. +|+.|++++|.+.. +|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCc
Confidence 466666655 32222 25777888888887 5666666674 99999999999987 7778899999999999999
Q ss_pred CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140 167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL 246 (275)
Q Consensus 167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 246 (275)
++. .+|...+..+.|+.|++++|.+... |.. ......|+.+.+++|.....+ ..+..++++..+.+.+|++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l-~~~----~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDL-PPE----IELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccC-chh----hhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCcee
Confidence 998 7887777889999999999988643 332 345566999999999654443 2567788888888999988
Q ss_pred CCCCCCcccCCCCCcCEEecccCcCce
Q 041140 247 HNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 247 ~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
... +..++.+++++.|++++|+++.
T Consensus 245 ~~~--~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 245 EDL--PESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eec--cchhccccccceeccccccccc
Confidence 763 4468889999999999998763
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=2.5e-11 Score=108.60 Aligned_cols=147 Identities=23% Similarity=0.299 Sum_probs=127.1
Q ss_pred ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140 110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189 (275)
Q Consensus 110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~ 189 (275)
...+++.|++. ++|..+..+..|+.+.++.|.+.. +|..++++..|.+|+++.|+++ .+|..+..++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhcccee--cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 34677888886 688888889999999999999987 8999999999999999999999 8999988887 89999999
Q ss_pred CCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
|++. ..|.. ++...+|..|+.+.|.+...++ .++.+.+|+.|.+..|++... |+ .+..++ |..||++.|
T Consensus 153 Nkl~-~lp~~----ig~~~tl~~ld~s~nei~slps---ql~~l~slr~l~vrRn~l~~l-p~-El~~Lp-Li~lDfScN 221 (722)
T KOG0532|consen 153 NKLT-SLPEE----IGLLPTLAHLDVSKNEIQSLPS---QLGYLTSLRDLNVRRNHLEDL-PE-ELCSLP-LIRLDFSCN 221 (722)
T ss_pred Cccc-cCCcc----cccchhHHHhhhhhhhhhhchH---HhhhHHHHHHHHHhhhhhhhC-CH-HHhCCc-eeeeecccC
Confidence 9886 45555 7888999999999999999864 788899999999999999875 55 566554 899999999
Q ss_pred cCc
Q 041140 270 EFD 272 (275)
Q Consensus 270 ~l~ 272 (275)
+++
T Consensus 222 kis 224 (722)
T KOG0532|consen 222 KIS 224 (722)
T ss_pred cee
Confidence 975
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=4.2e-10 Score=97.96 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=122.6
Q ss_pred CcEEEEEcCCCCCCCCC-------ccccccccCCCCcceeec--CccccCCCCCCEEECCCCCCCCCCcch-hhhCCccC
Q 041140 89 GHVLELRLGNPFLHDDE-------PFWLEDYKDETSKLIGKI--NPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSL 158 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~-------~~~L~~l~l~~n~l~~~l--p~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L 158 (275)
..+.++.|.+....... ..+++.|+++.|-+..-. ......+++|+.|+++.|.+... ... .-..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhh
Confidence 34666677766654433 146778888888777432 23345688888899988887653 221 12256788
Q ss_pred CEEECCCCCCCCC-CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCc
Q 041140 159 RHIDLSRAEFTGM-IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ 237 (275)
Q Consensus 159 ~~L~L~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 237 (275)
+.|.+++|.++-. +-..+..+|+|+.|++..|......... ..-+..|+.|+|++|++...+. ....+.++.|+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~ 274 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLN 274 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCccccccc-ccccccccchh
Confidence 8888888888732 2223446788999999888532222222 3456789999999999988763 34678899999
Q ss_pred EEeccCCcCCCCCCCcc-----cCCCCCcCEEecccCcCc
Q 041140 238 VLKLSACSLHNSLPELP-----IANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 238 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~N~l~ 272 (275)
.|+++.+.+...-.++. ...+++|++|++..|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 99999998876533322 356789999999999983
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=6.4e-10 Score=94.30 Aligned_cols=146 Identities=21% Similarity=0.171 Sum_probs=81.7
Q ss_pred ccCCCCCCEEECCCCCCCCCCcc---hhhhCCccCCEEECCCCCCCCC-------------CcccccCCCCCCeEEcccC
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLP---VFLGSMGSLRHIDLSRAEFTGM-------------IPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p---~~~~~l~~L~~L~L~~n~l~~~-------------lp~~l~~l~~L~~L~Ls~n 190 (275)
+...+.|++++||+|.+....++ ..+..+..|++|+|.+|.+.-. .-..++.-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44456777777777776554122 2344566677777777665410 1112334455666666665
Q ss_pred CCCCc----------------------------ccccccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEe
Q 041140 191 IPLSF----------------------------LYLENLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLK 240 (275)
Q Consensus 191 ~~~~~----------------------------~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~ 240 (275)
++... ........+.+++.|+.||+..|.++.. ..+...+..++.|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 54322 1101112356677777777777777654 22344566677777777
Q ss_pred ccCCcCCCCCCCc---c-cCCCCCcCEEecccCcCc
Q 041140 241 LSACSLHNSLPEL---P-IANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 241 L~~n~l~~~~~~~---~-l~~l~~L~~L~L~~N~l~ 272 (275)
+++|.+....... . -...++|+++++.+|.++
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 7777776541110 1 123567778888877765
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=2.8e-09 Score=69.29 Aligned_cols=61 Identities=33% Similarity=0.392 Sum_probs=47.2
Q ss_pred CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140 208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
++|++|++++|+++..+ ...+..+++|++|++++|+++.. ++..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~--~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIP--PDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEEC--TTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccC--HHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCcC
Confidence 46778888888877765 24667788888888888888765 677788888888888888875
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=2e-09 Score=91.29 Aligned_cols=183 Identities=20% Similarity=0.158 Sum_probs=134.9
Q ss_pred CcEEEEEcCCCCCCCCCc----------cccccccCCCCcceee-------------cCccccCCCCCCEEECCCCCCCC
Q 041140 89 GHVLELRLGNPFLHDDEP----------FWLEDYKDETSKLIGK-------------INPSLLDLKHLVYLELSNNNFEK 145 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----------~~L~~l~l~~n~l~~~-------------lp~~l~~l~~L~~L~Ls~n~l~~ 145 (275)
++++.++||.|.|+.-.. .+|+.|.+.+|++... ...-...-+.|+++..++|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 489999999998765322 4788999999998622 12234556889999999999876
Q ss_pred C---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCC
Q 041140 146 A---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGV 218 (275)
Q Consensus 146 ~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n 218 (275)
. .+...+...+.|+.+.+.+|.+.-. +...+..+++|+.||+.+|.++.......-..+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3 1334566778999999999988621 23456789999999999998764433332233677889999999999
Q ss_pred CCCCCC--chhhhh-CCCCCCcEEeccCCcCCCC---CCCcccCCCCCcCEEecccCcC
Q 041140 219 DLSTAS--DWFLVT-NMLPSLQVLKLSACSLHNS---LPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 219 ~l~~~~--~~~~~~-~~l~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~L~~N~l 271 (275)
.+.... .+...+ ...|+|+.+.+.+|.++.. .....+...+.|..|+|++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 998652 233333 3468999999999999754 1223456678999999999998
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=4.6e-09 Score=68.28 Aligned_cols=58 Identities=38% Similarity=0.588 Sum_probs=28.6
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n 190 (275)
+|++|++++|.++.. .+..+..+++|++|++++|++...-|..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 445555555555542 2234455555555555555555333334455555555555554
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=4.9e-10 Score=103.05 Aligned_cols=126 Identities=29% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~ 212 (275)
|.+.+.++|.+.. +...+.-++.|++|+|+.|++.. . +.+..+++|++||++.|.+....... ...+ .|+.
T Consensus 166 L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~vp~l~----~~gc-~L~~ 236 (1096)
T KOG1859|consen 166 LATASFSYNRLVL--MDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRHVPQLS----MVGC-KLQL 236 (1096)
T ss_pred HhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhccccccc----hhhh-hhee
Confidence 3344444454443 44444444555555555555541 1 24444555555555555433111110 1111 2455
Q ss_pred eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
|.+.+|.++... .+.++++|+.||+++|-+.+..--..++.+..|+.|+|.+|.+
T Consensus 237 L~lrnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555555444432 2334445555555555444432222344444555555555543
No 40
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.58 E-value=1.1e-07 Score=56.94 Aligned_cols=38 Identities=42% Similarity=1.040 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCcccCceEec
Q 041140 48 QSEREALLRFKQDLK-DPANRLALWS-D--GNCCTWAGVVCN 85 (275)
Q Consensus 48 ~~~~~~L~~~~~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~ 85 (275)
++|+++|++||+++. ++...+.+|. . .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 679999999999997 4667899993 2 799999999995
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-07 Score=92.55 Aligned_cols=177 Identities=24% Similarity=0.224 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCCCC----CCccccccccCCCCcc-eeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140 90 HVLELRLGNPFLHD----DEPFWLEDYKDETSKL-IGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163 (275)
Q Consensus 90 ~v~~l~l~~~~~~~----l~~~~L~~l~l~~n~l-~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 163 (275)
.+..+.+-+|.+.. ....+|++|-+..|.. ...++. .|..++.|+.||+++|.--+. +|..++.+-+|++|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccc
Confidence 44555555555432 2223577777777762 334444 366689999999998654444 9999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 164 SRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 164 ~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
++..+. .+|..++++++|.+|++..+......+.. ...+++|++|.+..-...........+..+..|+.+....
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccch----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999988 88999999999999999877543333332 4558888888887655333322233344444444444332
Q ss_pred CcC-----------------------CC-CCCCcccCCCCCcCEEecccCcCc
Q 041140 244 CSL-----------------------HN-SLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 244 n~l-----------------------~~-~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
... .. ......+..+.+|+.|.+.+..+.
T Consensus 678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred chhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence 211 00 001224566777888887777653
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=2.5e-09 Score=98.48 Aligned_cols=128 Identities=30% Similarity=0.274 Sum_probs=100.8
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeEE
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYLD 186 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L~ 186 (275)
.|.+.++++|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||++|.+. .+|.. ...+. |+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 4555677777775 4556677789999999999999984 38899999999999999998 67763 23344 99999
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
+.+|.++. +..+.++.+|+.||+++|-+.+... ...+..+..|+.|+|.+|.+.-
T Consensus 239 lrnN~l~t------L~gie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTT------LRGIENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHh------hhhHHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcccc
Confidence 99996642 2337889999999999999988854 3455667889999999998854
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=6e-08 Score=87.60 Aligned_cols=148 Identities=28% Similarity=0.275 Sum_probs=98.4
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|+++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 4445556666553 23346777888888888888877 444467788888888888888743 235667778888888
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEeccc
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY 268 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 268 (275)
+|.+..... +..++.|+.+++++|.+...... . ...+.+++.+++.+|.+... ..+..+..+..+++..
T Consensus 149 ~N~i~~~~~------~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i---~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 149 GNLISDISG------LESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREI---EGLDLLKKLVLLSLLD 217 (414)
T ss_pred cCcchhccC------CccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcc---cchHHHHHHHHhhccc
Confidence 887753321 55577888888888888776421 1 46677888888888877643 2344444555556666
Q ss_pred CcCc
Q 041140 269 NEFD 272 (275)
Q Consensus 269 N~l~ 272 (275)
|.++
T Consensus 218 n~i~ 221 (414)
T KOG0531|consen 218 NKIS 221 (414)
T ss_pred ccce
Confidence 6653
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-08 Score=85.27 Aligned_cols=159 Identities=25% Similarity=0.154 Sum_probs=94.8
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-c-CCCCCCe
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-G-NLSNLQY 184 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-~-~l~~L~~ 184 (275)
.|+.+.+.++++.+.+...+++-.+|+.|+++.+ .++...+.--+.+++.|+.|++++|.+.......+ . --++|+.
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 3445556666666666666677777777777764 34432233345667777777777777654322111 1 1245666
Q ss_pred EEcccCCCC-CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCE
Q 041140 185 LDLSSQIPL-SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYT 263 (275)
Q Consensus 185 L~Ls~n~~~-~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 263 (275)
|+++++.-. +...... ...++++|.+|||+.|..-.. ..+..+.+++.|++|.++.|..-..-.-..+...|+|.+
T Consensus 291 LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~y 367 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVY 367 (419)
T ss_pred hhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEE
Confidence 777765211 0001111 146788999999998754433 256677888999999999886532101123567788888
Q ss_pred EecccC
Q 041140 264 LDLSYN 269 (275)
Q Consensus 264 L~L~~N 269 (275)
||+.+.
T Consensus 368 Ldv~g~ 373 (419)
T KOG2120|consen 368 LDVFGC 373 (419)
T ss_pred EEeccc
Confidence 887654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=1.1e-07 Score=85.79 Aligned_cols=165 Identities=27% Similarity=0.243 Sum_probs=112.0
Q ss_pred EEEEEcCCCCCCC----CCc-cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 91 VLELRLGNPFLHD----DEP-FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 91 v~~l~l~~~~~~~----l~~-~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
+..++++.|.+.. +.. ..+..+++.+|.+.+.... +..+++|++|++++|.|+.. ..+..++.|+.|++++
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc---cchhhccchhhheecc
Confidence 4455566666655 222 4677888888888754332 56788999999999999874 3456677799999999
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|.+. .+ ..+..++.|+.+++++|.+....+. . ...+.+++.+.+.+|.+..... +..+..+..+++..|.
T Consensus 150 N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~----~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 150 NLIS-DI-SGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG----LDLLKKLVLLSLLDNK 219 (414)
T ss_pred Ccch-hc-cCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc----hHHHHHHHHhhccccc
Confidence 9987 33 3455688899999999877543321 0 2567788888999988877632 2233445555777887
Q ss_pred CCCCCCCcccCCCCC--cCEEecccCcCc
Q 041140 246 LHNSLPELPIANFSS--LYTLDLSYNEFD 272 (275)
Q Consensus 246 l~~~~~~~~l~~l~~--L~~L~L~~N~l~ 272 (275)
++.. - .+..+.. |+.+++++|.+.
T Consensus 220 i~~~-~--~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 220 ISKL-E--GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred ceec-c--CcccchhHHHHHHhcccCccc
Confidence 7643 1 2333333 788888888775
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-08 Score=84.57 Aligned_cols=136 Identities=28% Similarity=0.224 Sum_probs=74.9
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~ 211 (275)
.||++||++..++...+-.-+..+.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+..-.......+ +.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL--LSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH--HHhhhhHh
Confidence 4666777766665543444555666677777777777666666666666677777666532212111111 45556666
Q ss_pred eeeccCCCCCCCC---------------------------chhhhhCCCCCCcEEeccCC-cCCCCCCCcccCCCCCcCE
Q 041140 212 HLDLTGVDLSTAS---------------------------DWFLVTNMLPSLQVLKLSAC-SLHNSLPELPIANFSSLYT 263 (275)
Q Consensus 212 ~L~L~~n~l~~~~---------------------------~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~ 263 (275)
.|+++.|.++... .+.....++|+|.+|||++| .++.. ....+.+++-|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch-HHHHHHhcchhee
Confidence 6666665444321 11222345666667777665 33332 2334556666666
Q ss_pred EecccCc
Q 041140 264 LDLSYNE 270 (275)
Q Consensus 264 L~L~~N~ 270 (275)
|.++.+.
T Consensus 343 lSlsRCY 349 (419)
T KOG2120|consen 343 LSLSRCY 349 (419)
T ss_pred eehhhhc
Confidence 6666553
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=2.7e-06 Score=67.50 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc-CCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL 210 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L 210 (275)
+...+||++|.+... ..+..++.|.+|.++.|+++. +.+.+. .+++|+.|.+.+|.+.... ++..+..+++|
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~---dl~pLa~~p~L 115 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELG---DLDPLASCPKL 115 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhh---hcchhccCCcc
Confidence 334455555554331 233444555555555555552 222222 2344555555555443221 11113444455
Q ss_pred CeeeccCCCCCC
Q 041140 211 KHLDLTGVDLST 222 (275)
Q Consensus 211 ~~L~L~~n~l~~ 222 (275)
++|.+-+|..+.
T Consensus 116 ~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 116 EYLTLLGNPVEH 127 (233)
T ss_pred ceeeecCCchhc
Confidence 555555544443
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2.1e-06 Score=51.56 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT 169 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (275)
+|++|++++|+++. +|+.+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 45555555555554 4544555555555555555554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=1.6e-06 Score=71.91 Aligned_cols=148 Identities=20% Similarity=0.141 Sum_probs=87.4
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchh----hhCCccCCEEECCCCCCCCC----Cc---------ccccCCCCCCeEEcc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVF----LGSMGSLRHIDLSRAEFTGM----IP---------YQLGNLSNLQYLDLS 188 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~----~~~l~~L~~L~L~~n~l~~~----lp---------~~l~~l~~L~~L~Ls 188 (275)
.+.++++|+..+||+|.+... .|+. +...+.|.+|.+++|.+.-. +- .....-|.|+.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456777888888888877665 5543 34556778888877766411 11 112234556666666
Q ss_pred cCCCCCc-------------------------ccc---c-ccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCc
Q 041140 189 SQIPLSF-------------------------LYL---E-NLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQ 237 (275)
Q Consensus 189 ~n~~~~~-------------------------~~~---~-~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~ 237 (275)
.|++... .|. . ..-.+..+.+|+.|++..|.++-. ..+...+..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 6554311 010 0 001245567888888888877754 22344566777788
Q ss_pred EEeccCCcCCCCCCCcccC-----CCCCcCEEecccCcCcee
Q 041140 238 VLKLSACSLHNSLPELPIA-----NFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 238 ~L~L~~n~l~~~~~~~~l~-----~l~~L~~L~L~~N~l~g~ 274 (275)
.|.+.+|.++.......+. ..++|..|.+.+|.+.|.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 8888888776542222221 246778888888877654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.9e-07 Score=77.02 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=35.3
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC-----cccCCCCCcCEEe
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-----LPIANFSSLYTLD 265 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~l~~l~~L~~L~ 265 (275)
.++.+..|+|+.|++....+ ...+.++++|+.|.++++.+.+.+-. -.++++++++.|+
T Consensus 222 ~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCCcchhhhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 34555566666666666542 34566777777777777776543111 1356666666664
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=6.1e-07 Score=85.31 Aligned_cols=137 Identities=22% Similarity=0.275 Sum_probs=80.3
Q ss_pred ccccccCCCCcce-eecCcccc-CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeE
Q 041140 108 WLEDYKDETSKLI-GKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYL 185 (275)
Q Consensus 108 ~L~~l~l~~n~l~-~~lp~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L 185 (275)
+|++|++++...- ..-|..++ .+|.|+.|.+.+-.+....+-....++++|..||+++..++ .+ ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence 4555666553322 12222233 36777777777766655334455567777777887777776 23 566777777777
Q ss_pred EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc----hhhhhCCCCCCcEEeccCCcCCCC
Q 041140 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD----WFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
.+.+=.+.. ...+..+.++++|+.||+|.......+. +...-..+|.|+.||.++..+.+.
T Consensus 201 ~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 766543332 1223336677777777777765554421 122233467777777777666554
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=2.4e-06 Score=83.31 Aligned_cols=101 Identities=26% Similarity=0.267 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCC--CCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCE
Q 041140 89 GHVLELRLGNPF--LHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRH 160 (275)
Q Consensus 89 ~~v~~l~l~~~~--~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~ 160 (275)
..++.+-+..|. +..... ..|..||++.|.--+.+|..++++-+|++|++++..++. +|..+.++++|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhhe
Confidence 357777777764 222211 357789999988889999999999999999999999997 9999999999999
Q ss_pred EECCCCCCCCCCcccccCCCCCCeEEcccCC
Q 041140 161 IDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI 191 (275)
Q Consensus 161 L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~ 191 (275)
|++..+.....+|.....+.+|++|.+..-.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999888766666767779999999987653
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=4.9e-06 Score=49.96 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=27.1
Q ss_pred ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140 156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
++|++|++++|+++ .+|..++++++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888887 67777788888888888888765
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.92 E-value=7e-07 Score=66.62 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred ccCCCCCCEEECCCCCCCCCCcchhhhCC-ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLPVFLGSM-GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
+....+|+..++++|.+.. +|+.+... +.+++|++++|+++ .+|..+..++.|+.|+++.|.+.-. |.. +.
T Consensus 49 l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~v----i~ 120 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRV----IA 120 (177)
T ss_pred HhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHH----HH
Confidence 3444556666777777766 56555443 46777777777777 5677777777777777777765422 222 44
Q ss_pred CCCCCCeeeccCCCCCCCC
Q 041140 206 GLSLLKHLDLTGVDLSTAS 224 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~ 224 (275)
.+.++..|+..+|.+...+
T Consensus 121 ~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARAEID 139 (177)
T ss_pred HHHhHHHhcCCCCccccCc
Confidence 4666666666666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=1.3e-05 Score=63.74 Aligned_cols=123 Identities=22% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEEEcCCCCCCCCCcc-----ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 92 LELRLGNPFLHDDEPF-----WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 92 ~~l~l~~~~~~~l~~~-----~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
.++++++..+...+.+ ....+++++|++.. ++ .|..++.|++|.+++|.|+.. -|.--.-+++|++|.+.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhh-cc-cCCCccccceEEecCCcceee-ccchhhhccccceEEecCc
Confidence 4556666655444332 34457778888753 22 256678888899999988884 3433334577889999888
Q ss_pred CCCCCCc--ccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC
Q 041140 167 EFTGMIP--YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD 219 (275)
Q Consensus 167 ~l~~~lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~ 219 (275)
.+. .+- ..+..+|+|++|.+-+|..... .....-.+..+++|+.||+..-.
T Consensus 99 si~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhhh
Confidence 876 222 2456788888888888865422 22222336788888888887653
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=6.6e-06 Score=68.26 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=109.6
Q ss_pred CcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC--Ccc-------hhhhCCccCC
Q 041140 89 GHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA--QLP-------VFLGSMGSLR 159 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~--~~p-------~~~~~l~~L~ 159 (275)
..+++++|++|.|+.... ..+...+.+-.+|+..+++.-..... +++ +.+-.+++|+
T Consensus 30 d~~~evdLSGNtigtEA~--------------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 30 DELVEVDLSGNTIGTEAM--------------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred cceeEEeccCCcccHHHH--------------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 468888998884332211 11223345556777777765432211 133 3455789999
Q ss_pred EEECCCCCCCCCCcc----cccCCCCCCeEEcccCCCCCccccccc----------ccccCCCCCCeeeccCCCCCCCCc
Q 041140 160 HIDLSRAEFTGMIPY----QLGNLSNLQYLDLSSQIPLSFLYLENL----------SWLSGLSLLKHLDLTGVDLSTASD 225 (275)
Q Consensus 160 ~L~L~~n~l~~~lp~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l----------~~l~~l~~L~~L~L~~n~l~~~~~ 225 (275)
..+++.|.|.-..|+ .++.-+.|.+|.+++|....+ ....+ .....-|.|+.+....|++...+.
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence 999999999876665 456788999999999965322 11111 123456789999999999876632
Q ss_pred --hhhhhCCCCCCcEEeccCCcCCCCCC----CcccCCCCCcCEEecccCcCc
Q 041140 226 --WFLVTNMLPSLQVLKLSACSLHNSLP----ELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 226 --~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+...+..-..|..+.+..|.|..... -..+..+.+|++||+++|-||
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 23334444688899999888753311 123456788999999999875
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=8.5e-06 Score=77.64 Aligned_cols=136 Identities=22% Similarity=0.266 Sum_probs=99.5
Q ss_pred CCCCEEECCCCCCCCCCcchhhhC-CccCCEEECCCCCCCCC-CcccccCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140 131 KHLVYLELSNNNFEKAQLPVFLGS-MGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS 208 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~ 208 (275)
.+|++|++++...-....|..++. +|+|++|.+.+-.+... .-.-..++|+|..||+|+..+... ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL------SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc------HHHhccc
Confidence 578999998876544335555554 79999999998776532 223345789999999999866532 3388999
Q ss_pred CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC------cccCCCCCcCEEecccCcCcee
Q 041140 209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE------LPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+|+.|.+.+-.+..... ...+-.+++|+.||+|....... +. +.-..+|+|+.||.|+..+++.
T Consensus 196 nLq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cHHHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99999998888877653 44566799999999998866554 21 1123589999999999887653
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=3.5e-06 Score=70.74 Aligned_cols=163 Identities=19% Similarity=0.177 Sum_probs=97.3
Q ss_pred ccccCCCCcce--eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCC-CcccccCCCCCCeEE
Q 041140 110 EDYKDETSKLI--GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYLD 186 (275)
Q Consensus 110 ~~l~l~~n~l~--~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L~ 186 (275)
+.+++..|.++ .++...+.+++.|+.|+++.|.+... +...-..+.+|++|-+.+..+.-. ....+..+|.++.|.
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 33444444555 23333456788888888888887764 322213456788888877776532 233556777888888
Q ss_pred cccCCCCCcccc----c-------cc--------------ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140 187 LSSQIPLSFLYL----E-------NL--------------SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241 (275)
Q Consensus 187 Ls~n~~~~~~~~----~-------~l--------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 241 (275)
++.|........ + .+ .....++++..+-+..|.+..... -.....+|.+.-|+|
T Consensus 153 mS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 153 MSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNL 231 (418)
T ss_pred hccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh-cccCCCCCcchhhhh
Confidence 877733211000 0 00 001223455555555565554421 123345677778889
Q ss_pred cCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 242 SACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 242 ~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+.|++.....-+.+..+++|..|.++.|++..+
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 999887663445688899999999999988654
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=65.98 Aligned_cols=106 Identities=26% Similarity=0.310 Sum_probs=57.8
Q ss_pred CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC--CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA--EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206 (275)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 206 (275)
.+..|+.+.+.+..++.. ..+-.+++|+.|.++.| +.++.++.....+|+|+++++++|++.. ...+..+..
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccchhhh
Confidence 344455555555555432 22334667777777777 5555555444555777777777776542 222223556
Q ss_pred CCCCCeeeccCCCCCCCCc-hhhhhCCCCCCcEEe
Q 041140 207 LSLLKHLDLTGVDLSTASD-WFLVTNMLPSLQVLK 240 (275)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~ 240 (275)
+.+|..|++.+|..+.... --..+.-+++|.+|+
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 6667777777766655421 122334456666555
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=2.1e-06 Score=64.08 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccc-cCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 88 TGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSL-LDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
..+++.+++++| ++. .+|+.| .+++.+++|++++|.++. +|.++..++.|+.|+++.|
T Consensus 52 ~~el~~i~ls~N------------------~fk-~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 52 GYELTKISLSDN------------------GFK-KFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFN 110 (177)
T ss_pred CceEEEEecccc------------------hhh-hCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccC
Confidence 346677777776 664 345444 456788899999999988 8888999999999999999
Q ss_pred CCCCCCcccccCCCCCCeEEcccCCCC
Q 041140 167 EFTGMIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
.+. ..|.-+..+.++.+|+..+|...
T Consensus 111 ~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 111 PLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 988 67777777888888888887554
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00029 Score=62.74 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=41.4
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCC-CCCCCCcccccCCCCCCeE
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIPYQLGNLSNLQYL 185 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~lp~~l~~l~~L~~L 185 (275)
.++.|++++|.++ .+|. -..+|+.|.++++ .++. +|..+ ..+|++|.+++| .+. .+|. .|+.|
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 3566777777654 3452 1346888888874 4433 66544 357888999888 443 5554 35556
Q ss_pred EcccC
Q 041140 186 DLSSQ 190 (275)
Q Consensus 186 ~Ls~n 190 (275)
++..+
T Consensus 118 ~L~~n 122 (426)
T PRK15386 118 EIKGS 122 (426)
T ss_pred EeCCC
Confidence 66554
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=3.1e-05 Score=63.82 Aligned_cols=108 Identities=24% Similarity=0.213 Sum_probs=72.1
Q ss_pred hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC--CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhh
Q 041140 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ--IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLV 229 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 229 (275)
.-.+..|+.|.+.+..++ ++ ..+-.+++|++|.++.| .+.+..+.. ...+++|+++++++|.+..... ...
T Consensus 39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~lst-l~p 111 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKDLST-LRP 111 (260)
T ss_pred cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCccccccc-cch
Confidence 334556777777766665 22 34567889999999999 444444333 5566999999999999886532 345
Q ss_pred hCCCCCCcEEeccCCcCCCCC--CCcccCCCCCcCEEec
Q 041140 230 TNMLPSLQVLKLSACSLHNSL--PELPIANFSSLYTLDL 266 (275)
Q Consensus 230 ~~~l~~L~~L~L~~n~l~~~~--~~~~l~~l~~L~~L~L 266 (275)
+..+++|..|++..|..+..- -...+.-+++|++||-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 667888999999888665420 1123455677777653
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0015 Score=58.21 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCCC
Q 041140 91 VLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRAE 167 (275)
Q Consensus 91 v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n~ 167 (275)
...|+++++.+..++. ..|+.|.++++.-...+|..+ .++|++|++++| .+.. +|. +|++|++..+.
T Consensus 54 l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s--LP~------sLe~L~L~~n~ 123 (426)
T PRK15386 54 SGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG--LPE------SVRSLEIKGSA 123 (426)
T ss_pred CCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc--ccc------ccceEEeCCCC
Confidence 4566666666555443 246666666533334555443 357888888887 5543 554 36666666555
Q ss_pred CC--CCCcccccCCCCCCeEEcccCCCCCccccccccccc-CC-CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 168 FT--GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS-GL-SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 168 l~--~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
.. +.+|. +|+.|.+.++..... .. +. .+ ++|++|++++|.....|. .+ ..+|+.|+++.
T Consensus 124 ~~~L~~LPs------sLk~L~I~~~n~~~~--~~----lp~~LPsSLk~L~Is~c~~i~LP~---~L--P~SLk~L~ls~ 186 (426)
T PRK15386 124 TDSIKNVPN------GLTSLSINSYNPENQ--AR----IDNLISPSLKTLSLTGCSNIILPE---KL--PESLQSITLHI 186 (426)
T ss_pred CcccccCcc------hHhheeccccccccc--cc----cccccCCcccEEEecCCCcccCcc---cc--cccCcEEEecc
Confidence 32 23333 355565543221100 00 01 12 467777777776554332 11 14677777765
Q ss_pred C
Q 041140 244 C 244 (275)
Q Consensus 244 n 244 (275)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=1.9e-05 Score=65.78 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140 130 LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL 209 (275)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~ 209 (275)
+.+.+.|+.-++.+.++ .....|+.|+.|.|+-|+++. + ..+..|++|++|+|..|.+.... .+..+.++++
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sld---EL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESLD---ELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccHH---HHHHHhcCch
Confidence 34455566666666553 233456666666666666652 2 23455666666666666554322 2223455666
Q ss_pred CCeeeccCCCCCC
Q 041140 210 LKHLDLTGVDLST 222 (275)
Q Consensus 210 L~~L~L~~n~l~~ 222 (275)
|+.|.|..|.-.|
T Consensus 90 Lr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 90 LRTLWLDENPCCG 102 (388)
T ss_pred hhhHhhccCCccc
Confidence 6666666554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=5.5e-05 Score=63.12 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=27.2
Q ss_pred CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccC
Q 041140 129 DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 129 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n 190 (275)
+++.|+.|.|+-|.|+.. ..+..+++|+.|+|..|.|. .+.+ .+.++|+|+.|.|..|
T Consensus 39 kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence 345555555555555442 22444555555555555544 2221 3344555555555544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.07 E-value=0.018 Score=42.62 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCc-ccccCCCCCCeEEcccCCCCCcccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIP-YQLGNLSNLQYLDLSSQIPLSFLYLENLSWL 204 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 204 (275)
.+.++++|+.+.+.. .+... -...+..+++|+.+.+..+ +. .++ ..+..+++++.+.+.++ ........ +
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPNN-LKSIGDNA----F 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETST-T-EE-TTT----T
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-cc-ccceeeeeccccccccccccc-cccccccc----c
Confidence 466777888888774 45442 3345677778888888764 54 333 35667778888888653 22122222 6
Q ss_pred cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC
Q 041140 205 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY 262 (275)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 262 (275)
..+++|+.+.+..+ +...+ ...+... .|+.+.+.. .+... ....|.++++|+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~--~~~f~~~-~l~~i~~~~-~~~~i-~~~~F~~~~~l~ 129 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIG--SSSFSNC-NLKEINIPS-NITKI-EENAFKNCTKLK 129 (129)
T ss_dssp TT-TTECEEEETTT--BEEH--TTTTTT--T--EEE-TT-B-SS-----GGG------
T ss_pred cccccccccccCcc-ccEEc--hhhhcCC-CceEEEECC-CccEE-CCccccccccCC
Confidence 66788888888654 44332 1245555 778887765 33222 445666666654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0034 Score=31.43 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=9.1
Q ss_pred CCEEECCCCCCCCCCcccc
Q 041140 158 LRHIDLSRAEFTGMIPYQL 176 (275)
Q Consensus 158 L~~L~L~~n~l~~~lp~~l 176 (275)
|++|++++|+++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.72 E-value=0.0082 Score=30.00 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=12.4
Q ss_pred CCCEEECCCCCCCCCCcchhhhC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGS 154 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~ 154 (275)
+|++|++++|.++. +|+.+++
T Consensus 1 ~L~~Ldls~n~l~~--ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS--IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE--EGTTTTT
T ss_pred CccEEECCCCcCEe--CChhhcC
Confidence 35666677766663 6655443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.44 E-value=0.00041 Score=63.57 Aligned_cols=183 Identities=25% Similarity=0.176 Sum_probs=87.3
Q ss_pred EEEEEcCCCCCCCCCc----------cccccccCCCCcceeecC----ccccCC-CCCCEEECCCCCCCCC---Ccchhh
Q 041140 91 VLELRLGNPFLHDDEP----------FWLEDYKDETSKLIGKIN----PSLLDL-KHLVYLELSNNNFEKA---QLPVFL 152 (275)
Q Consensus 91 v~~l~l~~~~~~~l~~----------~~L~~l~l~~n~l~~~lp----~~l~~l-~~L~~L~Ls~n~l~~~---~~p~~~ 152 (275)
...++|.+|.+.+-.. ..++.++++.|.+.+.-- ..+-.. +.+++|++..|.++.. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4455666665554211 345556666666653211 112222 4455566666655543 133344
Q ss_pred hCCccCCEEECCCCCCCC----CCccccc----CCCCCCeEEcccCCCCCcccccccccccCCCC-CCeeeccCCCCCCC
Q 041140 153 GSMGSLRHIDLSRAEFTG----MIPYQLG----NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL-LKHLDLTGVDLSTA 223 (275)
Q Consensus 153 ~~l~~L~~L~L~~n~l~~----~lp~~l~----~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~-L~~L~L~~n~l~~~ 223 (275)
.....++.++++.|.+.. .++..+. ...++++|.+++|.++...-...-..+...+. +..+++..|.+...
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445556666666666531 1222222 35566666666665432100000011233333 45566666666533
Q ss_pred --CchhhhhCCC-CCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140 224 --SDWFLVTNML-PSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 224 --~~~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
-.....+..+ +.++.++++.|.+++.. ....+..++.++.+.++.|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1122333444 55666667666665541 12234455566666666666543
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.30 E-value=0.00027 Score=64.72 Aligned_cols=165 Identities=24% Similarity=0.151 Sum_probs=110.5
Q ss_pred cccccCCCCcceeecC----ccccCCCCCCEEECCCCCCCCCCcc---hhhhCC-ccCCEEECCCCCCCC----CCcccc
Q 041140 109 LEDYKDETSKLIGKIN----PSLLDLKHLVYLELSNNNFEKAQLP---VFLGSM-GSLRHIDLSRAEFTG----MIPYQL 176 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp----~~l~~l~~L~~L~Ls~n~l~~~~~p---~~~~~l-~~L~~L~L~~n~l~~----~lp~~l 176 (275)
+..+.+.+|.+..... ..+...++|+.|++++|.+.+.... ..+... +.+++|++..|.+++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677788888775433 3466788999999999999864221 222232 557888888888874 355566
Q ss_pred cCCCCCCeEEcccCCCCCccccccccccc----CCCCCCeeeccCCCCCCC--CchhhhhCCCCC-CcEEeccCCcCCCC
Q 041140 177 GNLSNLQYLDLSSQIPLSFLYLENLSWLS----GLSLLKHLDLTGVDLSTA--SDWFLVTNMLPS-LQVLKLSACSLHNS 249 (275)
Q Consensus 177 ~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~----~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~-L~~L~L~~n~l~~~ 249 (275)
.....++.++++.|.+...........+. ...++++|.+.+|.++.. ..+...+...+. ++.+++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 77889999999999764211111111122 467899999999998854 113445566666 77899999998754
Q ss_pred CC---CcccCCC-CCcCEEecccCcCce
Q 041140 250 LP---ELPIANF-SSLYTLDLSYNEFDN 273 (275)
Q Consensus 250 ~~---~~~l~~l-~~L~~L~L~~N~l~g 273 (275)
.. ...+... ..+++++++.|.|+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 11 1134444 678999999999875
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.14 E-value=0.13 Score=37.96 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=59.5
Q ss_pred hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh
Q 041140 151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT 230 (275)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 230 (275)
.+.++.+|+.+.+.. .+...-...+..+++|+.+.+..+ +....... +.++++++.+.+.. .+...+ ...+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~----F~~~~~l~~i~~~~-~~~~i~--~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA----FSNCKSLESITFPN-NLKSIG--DNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT----TTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceee----eecccccccccccc-cccccc--cccc
Confidence 566778899999874 455223346778889999999875 44333333 77887899999965 443332 1256
Q ss_pred CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
..+++|+.+++..+ +... ....+.++ +|+.+.+..+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i-~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEI-GSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp TT-TTECEEEETTT--BEE-HTTTTTT--T--EEE-TTB
T ss_pred cccccccccccCcc-ccEE-chhhhcCC-CceEEEECCC
Confidence 67889999999765 4322 44567777 8888888753
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.03 E-value=0.019 Score=52.53 Aligned_cols=132 Identities=26% Similarity=0.240 Sum_probs=71.2
Q ss_pred CCCCCEEECCCC-CCCCCCcchhhhCCccCCEEECCCC-CCCCCCc----ccccCCCCCCeEEcccCC-CCCcccccccc
Q 041140 130 LKHLVYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSRA-EFTGMIP----YQLGNLSNLQYLDLSSQI-PLSFLYLENLS 202 (275)
Q Consensus 130 l~~L~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~lp----~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~ 202 (275)
.+.|+.+.+..+ .+....+-.....+++|+.|+++++ ......+ .....+.+|+.|+++.+. ++...-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~---- 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS---- 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH----
Confidence 577777777665 3332112344556778888888763 2211111 233455778888887765 3322111
Q ss_pred ccc-CCCCCCeeeccCCC-CCCCCchhhhhCCCCCCcEEeccCCcCC-CCCCCcccCCCCCcCEEec
Q 041140 203 WLS-GLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLH-NSLPELPIANFSSLYTLDL 266 (275)
Q Consensus 203 ~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L 266 (275)
.+. .+++|+.|.+.++. ++... +......++.|++|+++++... +.........+++++.|.+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 122 36778888876666 44442 3334556777888888877543 2211112334555555443
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.44 E-value=0.018 Score=52.69 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=6.5
Q ss_pred CCCCCeeeccCCCC
Q 041140 207 LSLLKHLDLTGVDL 220 (275)
Q Consensus 207 l~~L~~L~L~~n~l 220 (275)
++.|++|+++++..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 44455555554433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.63 E-value=0.077 Score=24.61 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=4.6
Q ss_pred CCCEEECCCCCCC
Q 041140 132 HLVYLELSNNNFE 144 (275)
Q Consensus 132 ~L~~L~Ls~n~l~ 144 (275)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.20 E-value=0.0057 Score=50.09 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140 88 TGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE 167 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~ 167 (275)
..+++.||++.|.+..+. ..+..++.|..|+++.|.+.- +|..++.+..+.++++..|.
T Consensus 41 ~kr~tvld~~s~r~vn~~-------------------~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-------------------KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred cceeeeehhhhhHHHhhc-------------------cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccc
Confidence 367888888887433222 223344555556666666554 56666666666666666666
Q ss_pred CCCCCcccccCCCCCCeEEcccCC
Q 041140 168 FTGMIPYQLGNLSNLQYLDLSSQI 191 (275)
Q Consensus 168 l~~~lp~~l~~l~~L~~L~Ls~n~ 191 (275)
.+ ..|.+++..+.++++++-.+.
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hh-hCCccccccCCcchhhhccCc
Confidence 55 556666666666666665554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.035 Score=44.48 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=55.1
Q ss_pred ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC-CCccccccccccc-CCCCCCeeeccCCC-CCCCCchhhhhCC
Q 041140 156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP-LSFLYLENLSWLS-GLSLLKHLDLTGVD-LSTASDWFLVTNM 232 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~-~~~~~~~~l~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 232 (275)
..++.++-++..+...--+.+..++.++.|.+.++.- ..+. +..++ -.++|+.|++++|. |+... ...+.+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~ 174 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGG--LACLLK 174 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhH--HHHHHH
Confidence 3578888888888766666778888888888887742 2221 11133 24688999999774 55442 346677
Q ss_pred CCCCcEEeccCC
Q 041140 233 LPSLQVLKLSAC 244 (275)
Q Consensus 233 l~~L~~L~L~~n 244 (275)
+++|+.|.+.+-
T Consensus 175 lknLr~L~l~~l 186 (221)
T KOG3864|consen 175 LKNLRRLHLYDL 186 (221)
T ss_pred hhhhHHHHhcCc
Confidence 788888777643
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.56 E-value=0.13 Score=25.99 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=8.2
Q ss_pred CCcCEEecccCcCce
Q 041140 259 SSLYTLDLSYNEFDN 273 (275)
Q Consensus 259 ~~L~~L~L~~N~l~g 273 (275)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 466667777766654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.12 E-value=0.48 Score=24.33 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.3
Q ss_pred CCCCEEECCCCCCCC
Q 041140 131 KHLVYLELSNNNFEK 145 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~ 145 (275)
++|++|++++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555544
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.12 E-value=0.48 Score=24.33 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.3
Q ss_pred CCCCEEECCCCCCCC
Q 041140 131 KHLVYLELSNNNFEK 145 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~ 145 (275)
++|++|++++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344555555555544
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.82 E-value=0.0089 Score=49.00 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=73.5
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
++..+...+.||++.|.+-. +-..+.-++.|..|+++.|.+. .+|..++....++.+++..|..+ ..|.+ ++
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s----~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS----QK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc----cc
Confidence 57778889999999998866 5667777888999999999987 78999998888999998888664 44555 78
Q ss_pred CCCCCCeeeccCCCCCCC
Q 041140 206 GLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~ 223 (275)
..+.++++++-+|.++..
T Consensus 109 k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred ccCCcchhhhccCcchHH
Confidence 889999998888876543
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.46 E-value=0.16 Score=45.23 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=31.5
Q ss_pred cCCCCCCeeeccCCCCCCCC---chhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 205 SGLSLLKHLDLTGVDLSTAS---DWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
.+++.|+.+.++.+...... .+...-..+..|+.+.|+++....+..-+.+..+++|+.+++-+.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34566666666655433221 001112234556666666665443323334555666666665544
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.90 E-value=1.2 Score=23.12 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=9.1
Q ss_pred CCcCEEecccCcCc
Q 041140 259 SSLYTLDLSYNEFD 272 (275)
Q Consensus 259 ~~L~~L~L~~N~l~ 272 (275)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777664
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.84 E-value=1.3 Score=23.32 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=10.1
Q ss_pred CCcCEEecccCcCc
Q 041140 259 SSLYTLDLSYNEFD 272 (275)
Q Consensus 259 ~~L~~L~L~~N~l~ 272 (275)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777888887774
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.76 E-value=0.8 Score=42.28 Aligned_cols=64 Identities=25% Similarity=0.155 Sum_probs=31.6
Q ss_pred CccCCEEECCCCCCCCCCcc--cc-cCCCCCCeEEcccC--CCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140 155 MGSLRHIDLSRAEFTGMIPY--QL-GNLSNLQYLDLSSQ--IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 155 l~~L~~L~L~~n~l~~~lp~--~l-~~l~~L~~L~Ls~n--~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~ 223 (275)
.+.+..+.+++|++. .+.. ++ ...|+|+.|+|++| .+....... -.+...|++|.+.+|.+...
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~----K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELD----KLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhh----hhcCCCHHHeeecCCccccc
Confidence 445666667777665 2211 11 23466777777776 222111111 11223556667777766544
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=77.04 E-value=1.5 Score=39.23 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCCCCEEECCCCC-CCCCCcchhhhCCccCCEEECCCCCCC--CCCcccccCCCCCCeEEcccCCC-CCccccccccccc
Q 041140 130 LKHLVYLELSNNN-FEKAQLPVFLGSMGSLRHIDLSRAEFT--GMIPYQLGNLSNLQYLDLSSQIP-LSFLYLENLSWLS 205 (275)
Q Consensus 130 l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~n~l~--~~lp~~l~~l~~L~~L~Ls~n~~-~~~~~~~~l~~l~ 205 (275)
..+|+.+.++.++ ++...+-..-.+.+.|+.+++..+... +++-.--.+++.|+.+.++.+.. ++......-..-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 4555555555543 222111111123445555555544322 11212223577888888887642 2211010000024
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc-CCCCCCCcccCCCCCcCEE
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS-LHNSLPELPIANFSSLYTL 264 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L 264 (275)
.+..|+.+.++++...... ....+..+++|+.+++-+++ ++...+...-.++|++++.
T Consensus 399 ~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred cccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 4667888888888776654 35566778888888887774 3332222234466666554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.08 E-value=2.4 Score=22.07 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=7.7
Q ss_pred CCCEEECCCCCCCC
Q 041140 132 HLVYLELSNNNFEK 145 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~ 145 (275)
+|+.|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45555555555554
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=0.52 Score=37.97 Aligned_cols=83 Identities=20% Similarity=0.153 Sum_probs=55.7
Q ss_pred CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCC-ccccc-CCCCCCeEEcccCC-CCCcccccccccccCC
Q 041140 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMI-PYQLG-NLSNLQYLDLSSQI-PLSFLYLENLSWLSGL 207 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~l-p~~l~-~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~l 207 (275)
..++.++-++..|... --+.+.+++.++.|.+..+.--+.. -+.++ ..++|+.|++++|. ++...-. .+.++
T Consensus 101 ~~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~----~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA----CLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH----HHHHh
Confidence 3467788899888775 3456777888888888877643211 11222 45899999999883 4433322 37788
Q ss_pred CCCCeeeccCC
Q 041140 208 SLLKHLDLTGV 218 (275)
Q Consensus 208 ~~L~~L~L~~n 218 (275)
++|+.|.+.+-
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 88888877653
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.85 E-value=3.2 Score=38.50 Aligned_cols=68 Identities=25% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCC--CCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGV--DLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+.+.+..+.|++|++........+ -...|+|+.|+|++| .+....+ ...++ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ssl--sq~apklk~L~LS~N~~~~~~~~e-l~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSL--SQIAPKLKTLDLSHNHSKISSESE-LDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHH--HHhcchhheeecccchhhhcchhh-hhhhc-CCCHHHeeecCCccccc
Confidence 456677777888766433222222 234567888888887 4443332 22222 24577888888877654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.54 E-value=51 Score=30.41 Aligned_cols=104 Identities=21% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCCCCCCCcccccc----ccCCCCcceeecCccc---cCCCCCCEEECCCCCCCCCCcchhhhCC---cc
Q 041140 88 TGHVLELRLGNPFLHDDEPFWLED----YKDETSKLIGKINPSL---LDLKHLVYLELSNNNFEKAQLPVFLGSM---GS 157 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~~~L~~----l~l~~n~l~~~lp~~l---~~l~~L~~L~Ls~n~l~~~~~p~~~~~l---~~ 157 (275)
..++..++++.|.+.+-...+|.. +.++.++++..+-..+ ..=..+++++++.|..... +|..+..+ .-
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kdd-ip~~~n~~a~~~v 242 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDD-IPRTLNKKAGTLV 242 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCcc-chhHHHHhhhhhh
Confidence 467788888888776655443321 3333333332111100 1123467788888877765 66554332 23
Q ss_pred CCEEECCCCCCCC---CCcccccCCCCCCeEEcccCCC
Q 041140 158 LRHIDLSRAEFTG---MIPYQLGNLSNLQYLDLSSQIP 192 (275)
Q Consensus 158 L~~L~L~~n~l~~---~lp~~l~~l~~L~~L~Ls~n~~ 192 (275)
++.++.+...+.- .-+-..+.-+++++.+++.|..
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 5555555443321 1111233445677777776643
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.81 E-value=19 Score=18.25 Aligned_cols=13 Identities=38% Similarity=0.299 Sum_probs=8.7
Q ss_pred CCCcCEEecccCc
Q 041140 258 FSSLYTLDLSYNE 270 (275)
Q Consensus 258 l~~L~~L~L~~N~ 270 (275)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777764
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.28 E-value=50 Score=37.15 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=24.1
Q ss_pred cCCCCcceeecCccccCCCCCCEEECCCCCCCC
Q 041140 113 KDETSKLIGKINPSLLDLKHLVYLELSNNNFEK 145 (275)
Q Consensus 113 ~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~ 145 (275)
+|++|+|+-.-+..|..+++|+.|+|++|.+.=
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 467788875545567778888888888887643
Done!