Query 041140
Match_columns 275
No_of_seqs 284 out of 3337
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-33 8.1E-38 242.3 11.9 222 45-274 2-259 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.2E-30 1.1E-34 247.6 16.2 215 45-273 8-261 (768)
3 4fcg_A Uncharacterized protein 100.0 2.2E-29 7.6E-34 218.8 10.2 219 44-274 22-268 (328)
4 4eco_A Uncharacterized protein 100.0 3.2E-28 1.1E-32 229.0 14.9 218 46-272 27-366 (636)
5 4ecn_A Leucine-rich repeat pro 99.9 2.5E-27 8.5E-32 228.6 12.4 222 44-272 264-608 (876)
6 3m19_A Variable lymphocyte rec 99.9 6.5E-25 2.2E-29 183.5 16.8 189 75-274 3-194 (251)
7 2o6q_A Variable lymphocyte rec 99.9 1.4E-24 4.9E-29 183.3 18.3 191 74-273 2-219 (270)
8 3rgz_A Protein brassinosteroid 99.9 6.5E-24 2.2E-28 203.8 13.3 104 89-193 442-551 (768)
9 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 8.9E-27 169.4 19.9 154 89-249 61-220 (270)
10 1ogq_A PGIP-2, polygalacturona 99.9 6.4E-24 2.2E-28 183.2 7.8 182 89-275 76-284 (313)
11 3rfs_A Internalin B, repeat mo 99.9 6E-22 2.1E-26 167.4 19.1 176 89-274 41-220 (272)
12 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-22 9.4E-27 170.4 17.0 176 89-272 32-214 (285)
13 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 176.1 11.3 176 89-275 104-293 (328)
14 3e6j_A Variable lymphocyte rec 99.9 2.6E-21 8.9E-26 159.5 17.0 163 69-248 11-173 (229)
15 2z66_A Variable lymphocyte rec 99.9 2.5E-22 8.6E-27 172.3 11.0 192 76-274 6-238 (306)
16 1p9a_G Platelet glycoprotein I 99.9 3.9E-21 1.3E-25 164.0 18.1 173 89-273 31-209 (290)
17 1ozn_A Reticulon 4 receptor; N 99.9 6.7E-21 2.3E-25 161.8 17.3 175 92-274 14-192 (285)
18 3zyi_A Leucine-rich repeat-con 99.9 4.5E-21 1.6E-25 173.3 15.2 181 89-273 75-280 (452)
19 2o6s_A Variable lymphocyte rec 99.9 3E-21 1E-25 156.6 12.4 177 75-275 5-181 (208)
20 2z66_A Variable lymphocyte rec 99.9 2.2E-21 7.7E-26 166.3 11.8 177 89-273 78-262 (306)
21 2z62_A TOLL-like receptor 4, v 99.9 8.9E-21 3.1E-25 160.3 15.4 179 90-274 29-239 (276)
22 2z80_A TOLL-like receptor 2, v 99.9 1.1E-21 3.7E-26 171.7 9.8 191 73-273 26-236 (353)
23 3rfs_A Internalin B, repeat mo 99.9 4.8E-21 1.6E-25 161.8 13.2 172 89-275 63-238 (272)
24 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.9E-25 171.5 16.2 187 79-273 13-214 (477)
25 3v47_A TOLL-like receptor 5B a 99.9 9.5E-21 3.2E-25 170.9 15.3 84 109-193 81-167 (455)
26 1p9a_G Platelet glycoprotein I 99.8 3.5E-20 1.2E-24 158.1 17.0 174 89-273 10-186 (290)
27 3zyj_A Leucine-rich repeat-con 99.8 2.5E-20 8.5E-25 167.9 16.5 181 89-273 64-269 (440)
28 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-21 1.2E-25 177.6 11.2 189 76-273 3-210 (549)
29 3oja_B Anopheles plasmodium-re 99.8 1.8E-20 6.2E-25 175.0 15.8 103 91-194 53-161 (597)
30 3v47_A TOLL-like receptor 5B a 99.8 5.4E-21 1.9E-25 172.4 11.7 137 131-275 275-411 (455)
31 1xku_A Decorin; proteoglycan, 99.8 5.7E-20 1.9E-24 159.3 17.4 190 74-272 28-253 (330)
32 3o6n_A APL1; leucine-rich repe 99.8 2.2E-20 7.5E-25 165.5 14.6 83 109-193 95-178 (390)
33 3m19_A Variable lymphocyte rec 99.8 1.5E-19 5.1E-24 150.8 17.1 155 108-273 15-169 (251)
34 2ft3_A Biglycan; proteoglycan, 99.8 1E-19 3.5E-24 157.9 16.2 190 76-273 32-278 (332)
35 2v70_A SLIT-2, SLIT homolog 2 99.8 7.7E-20 2.6E-24 149.7 14.1 132 133-272 34-166 (220)
36 2v9t_B SLIT homolog 2 protein 99.8 9E-20 3.1E-24 149.3 14.4 134 131-272 32-165 (220)
37 2z7x_B TOLL-like receptor 1, v 99.8 1E-19 3.5E-24 167.0 15.5 175 90-274 303-483 (520)
38 1wwl_A Monocyte differentiatio 99.8 4.7E-22 1.6E-26 171.3 -0.4 161 108-272 96-266 (312)
39 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-20 1.3E-24 173.0 12.4 159 107-272 52-214 (635)
40 4ezg_A Putative uncharacterize 99.8 4.4E-20 1.5E-24 148.5 10.9 151 90-274 45-196 (197)
41 2z62_A TOLL-like receptor 4, v 99.8 7.5E-20 2.6E-24 154.6 12.7 159 107-272 28-190 (276)
42 1wwl_A Monocyte differentiatio 99.8 2.5E-20 8.6E-25 160.5 9.8 177 89-273 95-288 (312)
43 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 162.0 15.8 155 109-273 138-293 (440)
44 1h6u_A Internalin H; cell adhe 99.8 4.9E-19 1.7E-23 152.2 17.6 165 89-273 63-231 (308)
45 2xwt_C Thyrotropin receptor; s 99.8 3.6E-20 1.2E-24 153.4 9.8 174 89-273 31-219 (239)
46 2xot_A Amphoterin-induced prot 99.8 9.2E-20 3.2E-24 160.1 12.8 173 93-273 22-203 (361)
47 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-19 5.6E-24 168.5 14.6 178 89-273 32-218 (606)
48 2id5_A Lingo-1, leucine rich r 99.8 2.7E-19 9.1E-24 162.5 15.2 174 92-273 14-190 (477)
49 1ziw_A TOLL-like receptor 3; i 99.8 2.9E-19 1E-23 169.0 16.0 167 89-261 25-197 (680)
50 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.9E-23 141.2 17.1 146 118-274 18-163 (208)
51 3t6q_A CD180 antigen; protein- 99.8 1.2E-19 4.3E-24 169.3 12.8 158 108-273 34-193 (606)
52 1h6t_A Internalin B; cell adhe 99.8 5.4E-19 1.8E-23 150.8 15.6 165 89-273 46-214 (291)
53 1xku_A Decorin; proteoglycan, 99.8 3.6E-19 1.2E-23 154.2 14.3 153 109-273 123-277 (330)
54 3zyi_A Leucine-rich repeat-con 99.8 9.1E-19 3.1E-23 158.1 17.4 161 107-273 75-256 (452)
55 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-19 1.3E-23 164.7 15.3 175 90-274 332-512 (562)
56 1h6u_A Internalin H; cell adhe 99.8 5.3E-19 1.8E-23 152.0 15.0 166 89-274 41-210 (308)
57 3t6q_A CD180 antigen; protein- 99.8 5.4E-19 1.9E-23 164.9 16.2 180 90-273 255-463 (606)
58 4eco_A Uncharacterized protein 99.8 2E-20 6.7E-25 176.0 6.5 173 89-273 206-416 (636)
59 4b8c_D Glucose-repressible alc 99.8 3.5E-21 1.2E-25 183.5 1.3 215 46-274 129-356 (727)
60 3o6n_A APL1; leucine-rich repe 99.8 5.5E-19 1.9E-23 156.5 15.4 178 89-273 45-286 (390)
61 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-19 4.8E-24 175.3 12.5 189 77-274 14-219 (844)
62 3oja_B Anopheles plasmodium-re 99.8 4.8E-19 1.6E-23 165.4 15.3 104 89-194 75-185 (597)
63 3vq2_A TLR4, TOLL-like recepto 99.8 1.2E-19 4.3E-24 169.3 11.4 157 108-273 400-559 (606)
64 2z80_A TOLL-like receptor 2, v 99.8 3.3E-19 1.1E-23 155.9 12.9 181 81-273 27-212 (353)
65 3oja_A Leucine-rich immune mol 99.8 9.3E-20 3.2E-24 166.3 9.4 130 131-272 120-250 (487)
66 2ft3_A Biglycan; proteoglycan, 99.8 5.4E-19 1.9E-23 153.3 13.8 124 90-221 34-160 (332)
67 2z63_A TOLL-like receptor 4, v 99.8 2.4E-19 8.1E-24 165.9 12.1 177 89-274 347-533 (570)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-18 8.1E-23 159.5 17.7 70 204-273 373-442 (562)
69 4glp_A Monocyte differentiatio 99.8 1.1E-19 3.8E-24 156.3 7.8 153 108-273 146-308 (310)
70 4glp_A Monocyte differentiatio 99.8 1.3E-19 4.3E-24 155.9 8.1 177 91-273 93-286 (310)
71 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-18 8.1E-23 140.9 15.0 150 93-249 15-168 (220)
72 4ecn_A Leucine-rich repeat pro 99.8 2.3E-19 7.7E-24 173.3 10.2 173 89-274 448-659 (876)
73 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-18 8E-23 162.8 15.7 174 93-274 8-186 (680)
74 2v9t_B SLIT homolog 2 protein 99.8 4.7E-18 1.6E-22 139.1 15.5 136 107-249 32-167 (220)
75 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-18 3.8E-23 160.9 12.8 171 94-272 10-185 (549)
76 3oja_A Leucine-rich immune mol 99.8 5E-19 1.7E-23 161.4 9.6 166 89-273 58-228 (487)
77 2z63_A TOLL-like receptor 4, v 99.8 2.2E-18 7.6E-23 159.4 13.9 173 89-270 28-211 (570)
78 2z7x_B TOLL-like receptor 1, v 99.8 1E-18 3.4E-23 160.3 11.2 121 89-220 21-150 (520)
79 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-18 7.3E-23 167.1 14.1 177 93-274 8-189 (844)
80 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 159.7 14.1 165 89-273 43-211 (605)
81 4fmz_A Internalin; leucine ric 99.8 6.2E-18 2.1E-22 147.2 15.0 165 90-272 178-346 (347)
82 3o53_A Protein LRIM1, AGAP0063 99.8 9.3E-19 3.2E-23 151.0 9.6 169 89-272 80-250 (317)
83 3cvr_A Invasion plasmid antige 99.8 1.7E-18 5.8E-23 160.2 12.0 168 78-274 49-245 (571)
84 3o53_A Protein LRIM1, AGAP0063 99.8 6.7E-19 2.3E-23 151.9 8.7 165 90-273 59-228 (317)
85 1o6v_A Internalin A; bacterial 99.8 7.7E-18 2.6E-22 152.6 15.9 164 90-273 222-389 (466)
86 1h6t_A Internalin B; cell adhe 99.8 1.5E-17 5.2E-22 141.7 15.4 147 107-273 46-192 (291)
87 4g8a_A TOLL-like receptor 4; l 99.8 7.4E-18 2.5E-22 157.4 13.9 147 118-274 42-188 (635)
88 4fmz_A Internalin; leucine ric 99.8 1.6E-17 5.3E-22 144.6 15.0 167 90-274 156-326 (347)
89 2xot_A Amphoterin-induced prot 99.7 8.6E-18 2.9E-22 147.5 13.0 153 110-273 21-177 (361)
90 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 140.3 13.5 144 109-273 43-186 (263)
91 2ell_A Acidic leucine-rich nuc 99.7 7.7E-18 2.6E-22 131.7 10.4 135 129-272 22-160 (168)
92 3bz5_A Internalin-J, INLJ; leu 99.7 6.8E-17 2.3E-21 146.2 17.9 160 89-273 64-226 (457)
93 3e6j_A Variable lymphocyte rec 99.7 5.3E-17 1.8E-21 133.6 15.3 144 118-273 30-173 (229)
94 3bz5_A Internalin-J, INLJ; leu 99.7 8.5E-17 2.9E-21 145.5 17.7 161 88-273 84-247 (457)
95 1o6v_A Internalin A; bacterial 99.7 6.1E-17 2.1E-21 146.7 16.5 130 127-274 239-368 (466)
96 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7E-22 132.4 11.6 130 110-249 11-141 (192)
97 2xwt_C Thyrotropin receptor; s 99.7 7.4E-18 2.5E-22 139.4 9.0 156 107-273 31-194 (239)
98 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.3E-22 133.5 9.5 128 108-248 67-195 (197)
99 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.4E-21 148.9 16.1 146 108-273 44-189 (605)
100 2je0_A Acidic leucine-rich nuc 99.7 1.3E-17 4.5E-22 127.8 7.2 130 130-268 16-149 (149)
101 1w8a_A SLIT protein; signaling 99.7 7.7E-17 2.6E-21 129.0 11.7 127 93-224 12-142 (192)
102 2ast_B S-phase kinase-associat 99.7 2.4E-18 8.3E-23 149.0 3.0 174 89-269 70-257 (336)
103 2wfh_A SLIT homolog 2 protein 99.7 1.5E-16 5.3E-21 127.4 13.2 127 111-248 14-140 (193)
104 1xeu_A Internalin C; cellular 99.7 7.1E-17 2.4E-21 135.6 11.4 145 108-273 20-164 (263)
105 2ca6_A RAN GTPase-activating p 99.7 7.3E-19 2.5E-23 155.5 -0.8 185 89-273 60-288 (386)
106 2ell_A Acidic leucine-rich nuc 99.7 3.7E-17 1.3E-21 127.8 9.0 135 108-249 25-162 (168)
107 2ast_B S-phase kinase-associat 99.7 2.7E-19 9.2E-24 155.1 -3.8 190 76-273 36-237 (336)
108 2o6r_A Variable lymphocyte rec 99.7 4E-16 1.4E-20 123.0 14.8 129 111-249 11-139 (177)
109 1jl5_A Outer protein YOPM; leu 99.7 4.7E-16 1.6E-20 140.6 17.0 164 89-273 111-291 (454)
110 3g06_A SSPH2 (leucine-rich rep 99.7 8.8E-17 3E-21 150.3 10.3 94 91-194 42-155 (622)
111 2ca6_A RAN GTPase-activating p 99.7 2E-18 6.8E-23 152.7 -0.9 182 88-274 93-318 (386)
112 2je0_A Acidic leucine-rich nuc 99.7 7.2E-17 2.5E-21 123.6 7.7 129 108-243 18-149 (149)
113 1jl5_A Outer protein YOPM; leu 99.7 1.5E-15 5E-20 137.3 17.4 159 89-273 91-251 (454)
114 3goz_A Leucine-rich repeat-con 99.7 7.3E-18 2.5E-22 148.0 1.6 180 90-271 52-265 (362)
115 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.6E-21 139.3 9.3 189 77-273 9-216 (350)
116 2wfh_A SLIT homolog 2 protein 99.7 9.7E-16 3.3E-20 122.7 13.4 125 93-223 14-141 (193)
117 2o6r_A Variable lymphocyte rec 99.7 2.4E-15 8.2E-20 118.5 14.5 135 76-224 6-140 (177)
118 1dce_A Protein (RAB geranylger 99.6 5.6E-18 1.9E-22 157.0 -1.6 154 108-274 350-548 (567)
119 1a9n_A U2A', U2A'; complex (nu 99.6 2E-16 6.9E-21 124.7 7.5 137 126-272 14-153 (176)
120 3goz_A Leucine-rich repeat-con 99.6 1.9E-17 6.5E-22 145.3 1.4 184 89-273 22-239 (362)
121 3g06_A SSPH2 (leucine-rich rep 99.6 2.2E-15 7.5E-20 140.9 14.7 160 90-272 82-274 (622)
122 1ds9_A Outer arm dynein; leuci 99.6 1.5E-18 5.1E-23 139.6 -7.2 151 108-272 19-185 (198)
123 3cvr_A Invasion plasmid antige 99.6 7E-15 2.4E-19 136.0 15.8 134 108-272 60-193 (571)
124 4b8c_D Glucose-repressible alc 99.6 3.3E-15 1.1E-19 142.3 9.0 154 107-274 173-331 (727)
125 1dce_A Protein (RAB geranylger 99.6 9.4E-15 3.2E-19 135.4 10.5 123 132-266 442-567 (567)
126 1z7x_W Ribonuclease inhibitor; 99.5 1.9E-16 6.6E-21 142.8 -1.8 143 130-273 255-412 (461)
127 3g39_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 110.1 12.1 107 133-249 11-117 (170)
128 1z7x_W Ribonuclease inhibitor; 99.5 2.3E-16 7.7E-21 142.3 -3.6 184 90-273 29-241 (461)
129 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 108.2 12.2 106 134-249 15-120 (174)
130 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 107.2 11.9 108 109-224 11-118 (170)
131 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.1E-19 113.1 6.3 127 112-247 24-153 (176)
132 2r9u_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 105.9 11.9 108 110-225 15-122 (174)
133 1ds9_A Outer arm dynein; leuci 99.5 2.1E-16 7.2E-21 127.0 -8.1 135 127-273 14-154 (198)
134 4ay9_X Follicle-stimulating ho 99.4 4.5E-13 1.5E-17 116.9 10.0 171 93-272 13-191 (350)
135 3un9_A NLR family member X1; l 99.4 1.3E-15 4.3E-20 134.2 -6.4 160 89-249 72-254 (372)
136 2ifg_A High affinity nerve gro 99.3 8.5E-12 2.9E-16 108.4 10.3 106 134-249 11-118 (347)
137 2ifg_A High affinity nerve gro 99.3 1.5E-11 5E-16 106.9 10.7 106 111-224 12-119 (347)
138 3un9_A NLR family member X1; l 99.3 6.6E-14 2.3E-18 123.2 -5.0 166 108-273 73-253 (372)
139 3ogk_B Coronatine-insensitive 99.2 2.3E-12 7.7E-17 119.6 1.8 98 91-189 140-252 (592)
140 3ogk_B Coronatine-insensitive 99.2 6.3E-12 2.1E-16 116.7 2.3 105 89-193 112-233 (592)
141 3sb4_A Hypothetical leucine ri 99.1 1.8E-10 6.3E-15 99.4 8.3 85 179-272 225-310 (329)
142 2p1m_B Transport inhibitor res 99.0 1.4E-11 4.7E-16 114.3 -2.1 101 89-190 105-221 (594)
143 3sb4_A Hypothetical leucine ri 99.0 2.4E-09 8.1E-14 92.3 11.5 102 155-266 225-328 (329)
144 2p1m_B Transport inhibitor res 98.9 8.6E-11 2.9E-15 108.9 -0.2 155 89-244 130-324 (594)
145 2ra8_A Uncharacterized protein 98.8 5E-10 1.7E-14 97.9 1.3 147 123-273 164-321 (362)
146 1io0_A Tropomodulin; LRR prote 98.8 2.7E-10 9.1E-15 90.3 -1.1 124 123-246 28-163 (185)
147 1io0_A Tropomodulin; LRR prote 98.8 4.6E-10 1.6E-14 88.9 -0.7 125 148-272 28-164 (185)
148 3rw6_A Nuclear RNA export fact 98.7 2.2E-09 7.4E-14 89.7 0.6 160 75-240 76-257 (267)
149 4fdw_A Leucine rich hypothetic 98.6 3.6E-07 1.2E-11 80.9 11.4 88 174-271 265-357 (401)
150 2ra8_A Uncharacterized protein 98.5 2.9E-08 9.8E-13 86.8 2.8 142 124-273 132-293 (362)
151 4fdw_A Leucine rich hypothetic 98.4 2E-06 7E-11 76.1 11.4 149 109-269 159-333 (401)
152 3rw6_A Nuclear RNA export fact 98.3 4.7E-07 1.6E-11 75.5 3.6 101 112-214 148-257 (267)
153 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.7E-11 68.5 1.8 35 132-167 62-96 (176)
154 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.5E-11 67.5 2.5 87 156-248 61-154 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.7 7.3E-06 2.5E-10 65.0 0.5 92 127-218 37-136 (197)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 1.3E-05 4.5E-10 63.5 1.8 120 152-271 37-169 (197)
157 4gt6_A Cell surface protein; l 97.4 0.00091 3.1E-08 58.6 9.8 131 126-272 260-391 (394)
158 3rfe_A Platelet glycoprotein I 97.1 0.0011 3.8E-08 48.7 6.6 36 235-271 32-67 (130)
159 4fs7_A Uncharacterized protein 97.0 0.0038 1.3E-07 54.6 10.4 129 126-269 248-376 (394)
160 4h09_A Hypothetical leucine ri 97.0 0.0051 1.8E-07 53.3 10.4 131 127-269 213-343 (379)
161 3rfe_A Platelet glycoprotein I 96.5 0.0051 1.8E-07 45.1 6.0 54 135-192 12-67 (130)
162 4gt6_A Cell surface protein; l 96.5 0.013 4.6E-07 51.1 9.5 109 151-270 260-368 (394)
163 4fs7_A Uncharacterized protein 96.1 0.018 6E-07 50.3 8.1 133 126-270 66-219 (394)
164 4h09_A Hypothetical leucine ri 95.7 0.092 3.2E-06 45.3 11.1 108 152-269 213-320 (379)
165 2lz0_A Uncharacterized protein 30.4 1E+02 0.0034 20.6 5.0 38 151-189 15-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-33 Score=242.32 Aligned_cols=222 Identities=25% Similarity=0.399 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcc--cCceEecCCC--CcEEEEEcCCCCCCC---CCc-----ccccc
Q 041140 45 GCIQSEREALLRFKQDLKDPANRLALW-SDGNCCT--WAGVVCNDST--GHVLELRLGNPFLHD---DEP-----FWLED 111 (275)
Q Consensus 45 ~~~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~---l~~-----~~L~~ 111 (275)
.|.++|++||.+||+++.+|. .+.+| .+.+||. |.||+|+... ++|++++++++.+.+ +.. ..|+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998776 67899 5678998 9999998644 899999999999875 221 36778
Q ss_pred ccCCC-CcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140 112 YKDET-SKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 112 l~l~~-n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n 190 (275)
|++++ |.+.+.+|..++++++|++|++++|.+++. +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 88884 888888888888888888888888888865 7888888888888888888888888888888888888888888
Q ss_pred CCCCcccccccccccCCC-CCCeeeccCCCCCCC-Cc--------------------hhhhhCCCCCCcEEeccCCcCCC
Q 041140 191 IPLSFLYLENLSWLSGLS-LLKHLDLTGVDLSTA-SD--------------------WFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 191 ~~~~~~~~~~l~~l~~l~-~L~~L~L~~n~l~~~-~~--------------------~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
.+.+..|.. +..++ +|++|++++|.+++. +. .+..+..+++|+.|++++|++++
T Consensus 160 ~l~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 160 RISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCEEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred cccCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 776555544 55555 566666666655532 11 13355666777777777777766
Q ss_pred CCCCcccCCCCCcCEEecccCcCcee
Q 041140 249 SLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
. ++ .+..+++|++|++++|+++|.
T Consensus 236 ~-~~-~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 236 D-LG-KVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp B-GG-GCCCCTTCCEEECCSSCCEEC
T ss_pred e-cC-cccccCCCCEEECcCCcccCc
Confidence 5 33 266677777777777777764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.2e-30 Score=247.56 Aligned_cols=215 Identities=25% Similarity=0.280 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCcccCceEecCCCCcEEEEEcCCCCCCCC-------------------
Q 041140 45 GCIQSEREALLRFKQDLKDPANRLALW-SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDD------------------- 104 (275)
Q Consensus 45 ~~~~~~~~~L~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l------------------- 104 (275)
...++|++||++||+++.+|. .+++| .+.+||.|.||+|+ .++|++++++++.+.+.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 335789999999999998887 88999 57899999999998 58999999999876542
Q ss_pred ------------Cc-cccccccCCCCcceeecCc--cccCCCCCCEEECCCCCCCCCCcchhh-hCCccCCEEECCCCCC
Q 041140 105 ------------EP-FWLEDYKDETSKLIGKINP--SLLDLKHLVYLELSNNNFEKAQLPVFL-GSMGSLRHIDLSRAEF 168 (275)
Q Consensus 105 ------------~~-~~L~~l~l~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l 168 (275)
.. .+|++|++++|.+.|.+|. .++++++|++|++++|.+.+. .|..+ .++++|++|++++|.+
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence 00 2466677777777777776 677777777777777776654 45443 5666677777777766
Q ss_pred CCCCccc---ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 169 TGMIPYQ---LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 169 ~~~lp~~---l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ .++.+++|++|++++|+
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNK 234 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSC
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCc
Confidence 6655554 5556666666666655443222 2455566666666666655432 24555566666666666
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++. .+..+..+++|++|++++|.++|
T Consensus 235 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 235 LSGD-FSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp CCSC-HHHHTTTCSSCCEEECCSSCCEE
T ss_pred CCCc-ccHHHhcCCCCCEEECCCCcccC
Confidence 5554 44455555555555555555554
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-29 Score=218.82 Aligned_cols=219 Identities=20% Similarity=0.220 Sum_probs=167.2
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCC-----CCCCCcccCceEecC--------CCCcEEEEEcCCCCCCCCCc---
Q 041140 44 IGCIQSEREALLRFKQDL-KDPANRLALW-----SDGNCCTWAGVVCND--------STGHVLELRLGNPFLHDDEP--- 106 (275)
Q Consensus 44 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~W-----~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~l~~--- 106 (275)
.....+|+++|.+||+++ .++......| ...++|.|.|+.|.. ...+|+.|+++++.+..+..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~ 101 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF 101 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhh
Confidence 445678999999999988 5666666778 257899999999952 34789999999999887654
Q ss_pred --cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccC------
Q 041140 107 --FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGN------ 178 (275)
Q Consensus 107 --~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~------ 178 (275)
..|+.|++++|.++ .+|..++++++|++|++++|.++. +|..+..+++|++|++++|.+.+.+|..++.
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 37888999999998 899999999999999999999994 8999999999999999998888888877654
Q ss_pred ---CCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCccc
Q 041140 179 ---LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI 255 (275)
Q Consensus 179 ---l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l 255 (275)
+++|++|++++|.+. ..|.. +.++++|++|++++|.+++.+. .+..+++|++|++++|.+.+. .+..+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~----l~~l~~L~~L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~-~p~~~ 249 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPAS----IANLQNLKSLKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRN-YPPIF 249 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGG----GGGCTTCCEEEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCB-CCCCT
T ss_pred hccCCCCCEEECcCCCcC-cchHh----hcCCCCCCEEEccCCCCCcCch---hhccCCCCCEEECcCCcchhh-hHHHh
Confidence 888888888888776 44443 6677777777777777776643 455566666666666666655 44455
Q ss_pred CCCCCcCEEecccCcCcee
Q 041140 256 ANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 256 ~~l~~L~~L~L~~N~l~g~ 274 (275)
+.+++|++|++++|.+.+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp TCCCCCCEEECTTCTTCCB
T ss_pred cCCCCCCEEECCCCCchhh
Confidence 5666666666666555543
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.2e-28 Score=229.03 Aligned_cols=218 Identities=17% Similarity=0.155 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCC--------CCCC-CCCCCccc---CceEecCCCCcEEEEEcCCCCCCCCCc------c
Q 041140 46 CIQSEREALLRFKQDLKDPANR--------LALW-SDGNCCTW---AGVVCNDSTGHVLELRLGNPFLHDDEP------F 107 (275)
Q Consensus 46 ~~~~~~~~L~~~~~~~~~~~~~--------~~~W-~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~l~~------~ 107 (275)
....|++||.++++++.++.+. ..+| .+.++|.| .||+|+. .++|++|+|+++.+.+.-+ .
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999999666443 2369 57899999 9999986 4899999999996543111 1
Q ss_pred ccccccCCCC----------------------------------------------------------------------
Q 041140 108 WLEDYKDETS---------------------------------------------------------------------- 117 (275)
Q Consensus 108 ~L~~l~l~~n---------------------------------------------------------------------- 117 (275)
.|+.|++++|
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 3444444444
Q ss_pred --------cceeecCccccCCCCCCEEECCCCCCCCC----------------Ccchhhh--CCccCCEEECCCCCCCCC
Q 041140 118 --------KLIGKINPSLLDLKHLVYLELSNNNFEKA----------------QLPVFLG--SMGSLRHIDLSRAEFTGM 171 (275)
Q Consensus 118 --------~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~----------------~~p~~~~--~l~~L~~L~L~~n~l~~~ 171 (275)
+++| +|+.++++++|++|++++|.+++. .+|..++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 4445 666677777777777777776651 0456666 677777777777777767
Q ss_pred CcccccCCCCCCeEEcccCC-CCC-cccccccccccCC------CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 172 IPYQLGNLSNLQYLDLSSQI-PLS-FLYLENLSWLSGL------SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 172 lp~~l~~l~~L~~L~Ls~n~-~~~-~~~~~~l~~l~~l------~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
+|..++++++|++|++++|. +.+ ..|.. ++.+ ++|++|++++|.++..|. ...++.+++|++|++++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~----~~~L~~~~~l~~L~~L~L~~n~l~~ip~-~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDD----WQALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLY 339 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHH----HHHHHHSGGGGTCCEEECCSSCCSSCCC-HHHHTTCTTCCEEECCS
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHH----HHhhhccccCCCCCEEECCCCcCCccCc-hhhhccCCCCCEEeCcC
Confidence 77777777777777777775 554 44443 3333 667777777777764431 11456667777777777
Q ss_pred CcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 244 CSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
|+++|. .| .+..+++|++|++++|+++
T Consensus 340 N~l~g~-ip-~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 340 NQLEGK-LP-AFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp CCCEEE-CC-CCEEEEEESEEECCSSEEE
T ss_pred CcCccc-hh-hhCCCCCCCEEECCCCccc
Confidence 777655 33 5666677777777777654
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.5e-27 Score=228.57 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=161.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCC-CCCCCCC--ccc------------CceEecCCCCcEEEEEcCCCCCCCCCc--
Q 041140 44 IGCIQSEREALLRFKQDLKDPANRLA-LWSDGNC--CTW------------AGVVCNDSTGHVLELRLGNPFLHDDEP-- 106 (275)
Q Consensus 44 ~~~~~~~~~~L~~~~~~~~~~~~~~~-~W~~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~l~~-- 106 (275)
+.+..+|++||.+||+++.+|.+... .|...++ |.| .||+|+. .+||++|+|+++.+.+.-+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~ 342 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDA 342 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGG
T ss_pred cccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchH
Confidence 34457899999999999977622221 1222355 999 9999986 6899999999998753211
Q ss_pred ----cccccccC-CCC----------------------------------------------------------------
Q 041140 107 ----FWLEDYKD-ETS---------------------------------------------------------------- 117 (275)
Q Consensus 107 ----~~L~~l~l-~~n---------------------------------------------------------------- 117 (275)
..|+.|++ ++|
T Consensus 343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~ 422 (876)
T 4ecn_A 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422 (876)
T ss_dssp GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence 24555666 444
Q ss_pred -------------cceeecCccccCCCCCCEEECCCCCCCC-----------------CCcchhhh--CCccCCEEECCC
Q 041140 118 -------------KLIGKINPSLLDLKHLVYLELSNNNFEK-----------------AQLPVFLG--SMGSLRHIDLSR 165 (275)
Q Consensus 118 -------------~l~~~lp~~l~~l~~L~~L~Ls~n~l~~-----------------~~~p~~~~--~l~~L~~L~L~~ 165 (275)
++++ +|..++++++|++|++++|.+++ . +|..++ ++++|++|++++
T Consensus 423 l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 423 ISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEES
T ss_pred cchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcC
Confidence 4444 88889999999999999999988 3 777777 999999999999
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCC-CCC-ccccc--ccc-cccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEe
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQI-PLS-FLYLE--NLS-WLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLK 240 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~-~~~-~~~~~--~l~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 240 (275)
|.+.+.+|..++++++|++|++++|. +.+ ..|.. .+. .+..+++|++|++++|.++..|. ...++.+++|+.|+
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLD 579 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEE
Confidence 99999999999999999999999997 766 44433 000 12344578888888887774432 12566777777777
Q ss_pred ccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 241 LSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 241 L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+++|.++ . .| .++.+++|+.|++++|.++
T Consensus 580 Ls~N~l~-~-lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 580 CVHNKVR-H-LE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CTTSCCC-B-CC-CCCTTSEESEEECCSSCCS
T ss_pred CCCCCcc-c-ch-hhcCCCcceEEECcCCccc
Confidence 7777777 4 33 5777777777777777765
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=6.5e-25 Score=183.47 Aligned_cols=189 Identities=22% Similarity=0.253 Sum_probs=164.7
Q ss_pred CCcccCceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh
Q 041140 75 NCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF 151 (275)
Q Consensus 75 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~ 151 (275)
+|+.|.|..|.. ..+.++++++.+..++. ..++.|++++|++.+..+..+.++++|++|++++|.+++. .+..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGV 78 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhH
Confidence 577899999953 34578999998776544 4789999999999998888999999999999999999996 6777
Q ss_pred hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 231 (275)
+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+. ..+.
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--~~~~ 152 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPA--GAFD 152 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTT
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCH--HHcC
Confidence 899999999999999999766677899999999999999988655544 7889999999999999998853 4678
Q ss_pred CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
.+++|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus 153 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCceeCC
Confidence 899999999999999986 777899999999999999999864
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.4e-24 Score=183.28 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=99.7
Q ss_pred CCCcccCceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccC---------------------
Q 041140 74 GNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLD--------------------- 129 (275)
Q Consensus 74 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~--------------------- 129 (275)
.++|.|.|+.|.. ...++.++++++.+..++. ..++.|++++|++++..+..+.+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 4677787777643 2233445555554443221 23444444444444333334444
Q ss_pred ---CCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140 130 ---LKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206 (275)
Q Consensus 130 ---l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 206 (275)
+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +..
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~ 155 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV----FDK 155 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTT
T ss_pred hcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH----ccC
Confidence 45555555555555442 2233444555555555555555433344455555555555555544332222 455
Q ss_pred CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++|++|++++|.+++.+. ..+..+++|++|++++|++++. ++..+..+++|+.|++++|+++.
T Consensus 156 l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcccceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCeeC
Confidence 6666666666666665532 2355566666666666666654 55456666666667776666543
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=6.5e-24 Score=203.77 Aligned_cols=104 Identities=29% Similarity=0.477 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.+++++|.+.+..+ ..|+.|++++|++++.+|..+.++++|++|++++|.+++. +|..++.+++|++|+
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILK 520 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEE
Confidence 356666777666654322 2455566666666666666666666666666666666655 666666666666666
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
+++|+++|.+|..++.+++|++|++++|.+.
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6666666556655555555555555555443
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=169.40 Aligned_cols=154 Identities=20% Similarity=0.156 Sum_probs=127.8
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
.+++.|++++|.+..+.. ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLS 139 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEE
Confidence 456667777666655432 3577888999999876667788999999999999999986 666789999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 242 (275)
+++|.+.+..+..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+++.+. ..+..+++|+.|+++
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECC
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEec
Confidence 9999999655556899999999999999888665544 7889999999999999998853 357789999999999
Q ss_pred CCcCCCC
Q 041140 243 ACSLHNS 249 (275)
Q Consensus 243 ~n~l~~~ 249 (275)
+|.+...
T Consensus 214 ~N~~~c~ 220 (270)
T 2o6q_A 214 ENPWDCT 220 (270)
T ss_dssp SSCBCCS
T ss_pred CCCeeCC
Confidence 9998765
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=6.4e-24 Score=183.17 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=144.2
Q ss_pred CcEEEEEcCC-CCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEE
Q 041140 89 GHVLELRLGN-PFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHI 161 (275)
Q Consensus 89 ~~v~~l~l~~-~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L 161 (275)
..++.+++++ |.+.+..+ ..|++|++++|.+++.+|..+.++++|++|++++|.+++. +|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence 4678889984 76553222 3677788888888888888888888888888888888876 78888888888888
Q ss_pred ECCCCCCCCCCcccccCCC-CCCeEEcccCCCCCccccc-------------------ccccccCCCCCCeeeccCCCCC
Q 041140 162 DLSRAEFTGMIPYQLGNLS-NLQYLDLSSQIPLSFLYLE-------------------NLSWLSGLSLLKHLDLTGVDLS 221 (275)
Q Consensus 162 ~L~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~~~~~~~~~-------------------~l~~l~~l~~L~~L~L~~n~l~ 221 (275)
++++|++++.+|..++.++ +|++|++++|.+.+..|.. ....+..+++|+.|++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 8888888878888888877 7888888877655332211 1123677889999999999998
Q ss_pred CCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140 222 TASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275 (275)
Q Consensus 222 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i 275 (275)
+.++ .+..+++|++|++++|++++. .|..+..+++|++|++++|+++|.|
T Consensus 235 ~~~~---~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 235 FDLG---KVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp CBGG---GCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred eecC---cccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccccC
Confidence 7743 477889999999999999987 6668999999999999999999865
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6e-22 Score=167.37 Aligned_cols=176 Identities=22% Similarity=0.232 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
..++.++++++.+..... ..|+.|++++|.+++. +.+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECC
Confidence 468888888888776554 3678888898898862 4688899999999999999885 55567889999999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|++++..+..++.+++|++|++++|.+.+..+.. +..+++|+.|++++|.+++.+. ..+..+++|++|++++|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCC
Confidence 99998666666888999999999999887655544 6788999999999999988752 35678899999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
++++. ++..+..+++|++|++++|+++|.
T Consensus 192 ~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 192 QLKSV-PDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcc-CHHHHhCCcCCCEEEccCCCcccc
Confidence 99886 666788899999999999988764
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.7e-22 Score=170.39 Aligned_cols=176 Identities=22% Similarity=0.194 Sum_probs=102.4
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCC-CCCCCcchhhhCCccCCEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-FEKAQLPVFLGSMGSLRHI 161 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L 161 (275)
..++.|++++|.+..... ..|+.|++++|.+++..|..+.++++|++|++++|. ++.. .|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEE
Confidence 456777777776654332 256666777777766666666677777777777775 5553 45566666777777
Q ss_pred ECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140 162 DLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241 (275)
Q Consensus 162 ~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 241 (275)
++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+. ..+..+++|++|++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLL 184 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEEC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCH--HHhcCccccCEEEC
Confidence 77777666555556666666666666666655433332 4555556666666555554431 12444455555555
Q ss_pred cCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 242 SACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 242 ~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
++|.+++. .+..+..+++|++|++++|.++
T Consensus 185 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 185 HQNRVAHV-HPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCccccc-CHhHccCcccccEeeCCCCcCC
Confidence 55555443 3334445555555555555444
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.3e-22 Score=176.06 Aligned_cols=176 Identities=22% Similarity=0.197 Sum_probs=133.7
Q ss_pred CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhC---------
Q 041140 89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS--------- 154 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~--------- 154 (275)
.+++.+++++|.+..++. ..|+.|++++|.++ .+|..+.++++|++|++++|.+.+. +|..+..
T Consensus 104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhcc
Confidence 467888888888775443 36777888888887 7788888888888888888777665 7766654
Q ss_pred CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCC
Q 041140 155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234 (275)
Q Consensus 155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 234 (275)
+++|++|++++|+++ .+|..++.+++|++|++++|.+.+. +.. +..+++|++|++++|.+.+.. +..++.++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~----l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPA----IHHLPKLEELDLRGCTALRNY--PPIFGGRA 253 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGG----GGGCTTCCEEECTTCTTCCBC--CCCTTCCC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chh----hccCCCCCEEECcCCcchhhh--HHHhcCCC
Confidence 888888888888887 7788888888888888888877643 333 677888888888888777762 34667778
Q ss_pred CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275 (275)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i 275 (275)
+|++|++++|.+.+. .|..+..+++|++|++++|++.|.|
T Consensus 254 ~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 254 PLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CCCEEECTTCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCEEECCCCCchhh-cchhhhcCCCCCEEeCCCCCchhhc
Confidence 888888888887777 5556788888888888888877754
No 14
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=2.6e-21 Score=159.48 Aligned_cols=163 Identities=18% Similarity=0.109 Sum_probs=78.0
Q ss_pred CCCCCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCc
Q 041140 69 ALWSDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQL 148 (275)
Q Consensus 69 ~~W~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~ 148 (275)
..|.+...|.|.++.|... +++.+ ......+++.|++++|++++..|..+.++++|++|++++|.++.. .
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~--~l~~i-------p~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~ 80 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK--RHASV-------PAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-P 80 (229)
T ss_dssp CCCCTTCEEETTEEECTTS--CCSSC-------CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-C
T ss_pred ccCCCCCEEeCCEeEccCC--CcCcc-------CCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-C
Confidence 3457888999999999641 11111 000113344444444455544444455555555555555555442 2
Q ss_pred chhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhh
Q 041140 149 PVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFL 228 (275)
Q Consensus 149 p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~ 228 (275)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.+. ..|.. +..+++|++|++++|.+++.+. .
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~~--~ 153 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG----IERLTHLTHLALDQNQLKSIPH--G 153 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT----GGGCTTCSEEECCSSCCCCCCT--T
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc----cccCCCCCEEECCCCcCCccCH--H
Confidence 223344555555555555555333333444555555555555444 22222 4444555555555555544431 2
Q ss_pred hhCCCCCCcEEeccCCcCCC
Q 041140 229 VTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 229 ~~~~l~~L~~L~L~~n~l~~ 248 (275)
.+..+++|+.|++++|.+..
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCT
T ss_pred HHhCCCCCCEEEeeCCCccC
Confidence 34444455555555554443
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-22 Score=172.26 Aligned_cols=192 Identities=23% Similarity=0.261 Sum_probs=133.1
Q ss_pred CcccCceEecCCC---------CcEEEEEcCCCCCCCCCc------cccccccCCCCccee-------------------
Q 041140 76 CCTWAGVVCNDST---------GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIG------------------- 121 (275)
Q Consensus 76 ~c~w~gv~c~~~~---------~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~------------------- 121 (275)
.|.|.++.|.... ..++.|++++|.+..+.. ..|+.|++++|.++.
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4778888886421 468888888887765432 245566666665542
Q ss_pred ------ecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC-
Q 041140 122 ------KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS- 194 (275)
Q Consensus 122 ------~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~- 194 (275)
.+|..+..+++|++|++++|.++.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 2334455566666666666666553111356666777777777777766666667777777777777776654
Q ss_pred cccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 195 FLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 195 ~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
..+.. +..+++|++|++++|.+++.+ +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus 166 ~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 166 FLPDI----FTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EECSC----CTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBC
T ss_pred cchhH----HhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCccc
Confidence 23333 778888999999999888763 34677888999999999999876 666788899999999999998874
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.9e-21 Score=164.01 Aligned_cols=173 Identities=22% Similarity=0.116 Sum_probs=114.2
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.|++++|.+..+.. ..|+.|++++|.+++..+. ..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence 356677777776654322 3566667777777654332 567777777777777765 666667777777777
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 242 (275)
+++|++++..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|++++.+. ..+..+++|+.|+++
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLLQ 180 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEECC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEECC
Confidence 7777777544456777777777777777766544333 5667777777777777776642 345667777777777
Q ss_pred CCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 243 ACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+|+++. .|..+...++|+.+++++|++..
T Consensus 181 ~N~l~~--ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 181 ENSLYT--IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SSCCCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCcCCc--cChhhcccccCCeEEeCCCCccC
Confidence 777764 33355666677777777777653
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=6.7e-21 Score=161.77 Aligned_cols=175 Identities=19% Similarity=0.115 Sum_probs=151.8
Q ss_pred EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC-
Q 041140 92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE- 167 (275)
Q Consensus 92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~- 167 (275)
+.++.+++.+..++. ..++.|++++|.+++..+..+.++++|++|++++|.+++. .|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCC
Confidence 566677776655432 4789999999999988888899999999999999999985 68889999999999999998
Q ss_pred CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCC
Q 041140 168 FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLH 247 (275)
Q Consensus 168 l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 247 (275)
+....|..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+++.+. ..+..+++|++|++++|+++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----FRGLAALQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhH----hhCCcCCCEEECCCCcccccCH--hHhccCCCccEEECCCCccc
Confidence 77555788999999999999999988765655 8889999999999999998853 35788999999999999998
Q ss_pred CCCCCcccCCCCCcCEEecccCcCcee
Q 041140 248 NSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+. ++..+..+++|++|++++|.+++.
T Consensus 167 ~~-~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 167 SV-PERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp EE-CTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cc-CHHHhcCccccCEEECCCCccccc
Confidence 76 666799999999999999999874
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=4.5e-21 Score=173.26 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=123.8
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.|++++|.+..+.. ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence 478899999998876432 3688899999999988888899999999999999999874 455688899999999
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccc-------------------cccccCCCCCCeeeccCCCCCCC
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLEN-------------------LSWLSGLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~-------------------l~~l~~l~~L~~L~L~~n~l~~~ 223 (275)
+++|++....+..+..+++|++|++++|...+..+... ++.+..+++|+.|++++|.+++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence 99998884444456666666666666632222222110 01134455555555555555554
Q ss_pred CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+ +..+..+++|+.|++++|++++. ++..+..+++|+.|+|++|+|++
T Consensus 234 ~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 234 R--PGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp C--GGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSC
T ss_pred C--cccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCCc
Confidence 2 33566667777777777777665 55567777777777777777664
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=3e-21 Score=156.56 Aligned_cols=177 Identities=21% Similarity=0.182 Sum_probs=126.8
Q ss_pred CCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhC
Q 041140 75 NCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGS 154 (275)
Q Consensus 75 ~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~ 154 (275)
..|.|.++.|.... ++.+ .......++.|++++|++++..+..+.++++|++|++++|.++.. .+..+..
T Consensus 5 C~C~~~~v~c~~~~--l~~~-------p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 74 (208)
T 2o6s_A 5 CSCSGTTVECYSQG--RTSV-------PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNK 74 (208)
T ss_dssp CEEETTEEECCSSC--CSSC-------CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTT
T ss_pred CEECCCEEEecCCC--ccCC-------CCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCC
Confidence 34789999996421 1111 111123566777777788766566677888888888888888874 4445678
Q ss_pred CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCC
Q 041140 155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLP 234 (275)
Q Consensus 155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 234 (275)
+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+. ..+..++
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~ 148 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPD--GVFDRLT 148 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCT
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCH--HHhccCC
Confidence 888888888888888554455788888888888888877554443 6778888888888888887753 3467788
Q ss_pred CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275 (275)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i 275 (275)
+|++|++++|.+.+. +++|+.|+++.|+++|.|
T Consensus 149 ~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 149 SLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp TCCEEECCSCCBCCC--------TTTTHHHHHHHHHCTTTB
T ss_pred CccEEEecCCCeecC--------CCCHHHHHHHHHhCCcee
Confidence 888888888876553 346778888888887754
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2.2e-21 Score=166.32 Aligned_cols=177 Identities=24% Similarity=0.298 Sum_probs=152.1
Q ss_pred CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceeecC-ccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGKIN-PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.|++++|.+..+.. ..|+.|++++|.+++..+ ..+..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEE
Confidence 467778888777654322 468889999999987665 5789999999999999999886 788899999999999
Q ss_pred CCCCCCCC-CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEec
Q 041140 163 LSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKL 241 (275)
Q Consensus 163 L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 241 (275)
+++|.+.+ .+|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+. ..+..+++|++|++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L 230 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDY 230 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEEC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccCh--hhccCcccCCEeEC
Confidence 99999986 57888999999999999999988765655 8899999999999999998853 35788999999999
Q ss_pred cCCcCCCCCCCcccCCCC-CcCEEecccCcCce
Q 041140 242 SACSLHNSLPELPIANFS-SLYTLDLSYNEFDN 273 (275)
Q Consensus 242 ~~n~l~~~~~~~~l~~l~-~L~~L~L~~N~l~g 273 (275)
++|++++. ++..+..++ +|++|++++|++++
T Consensus 231 ~~N~l~~~-~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 231 SLNHIMTS-KKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTSCCCBC-SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCCCccc-CHHHHHhhhccCCEEEccCCCeec
Confidence 99999987 666788885 99999999999976
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=8.9e-21 Score=160.28 Aligned_cols=179 Identities=20% Similarity=0.194 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140 90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 163 (275)
.++.+++++|.+.++.. ..|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEEC
Confidence 46666666666554322 2456666666666655555566666666666666666653 3445666666666666
Q ss_pred CCCCCCCCCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCCCc-hhh-------------
Q 041140 164 SRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFL------------- 228 (275)
Q Consensus 164 ~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-~~~------------- 228 (275)
++|.+.+..+..++.+++|++|++++|.+.+. .|.. +.++++|++|++++|.+++.+. ...
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG----GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchh----hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 66666644444566666666666666655432 2333 5555666666666665554321 011
Q ss_pred -----------hhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 229 -----------VTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 229 -----------~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
......+|++|++++|++++. ++..+..+++|++|++++|++++.
T Consensus 184 ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCCCcccccCccccCCCcccEEECCCCceeec-CHhHhcccccccEEEccCCccccc
Confidence 112234789999999999876 776788999999999999999864
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=171.72 Aligned_cols=191 Identities=20% Similarity=0.222 Sum_probs=151.5
Q ss_pred CCCCcccCceEecCC-----------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCE
Q 041140 73 DGNCCTWAGVVCNDS-----------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVY 135 (275)
Q Consensus 73 ~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~ 135 (275)
....|.|.++ |+.. ...++.|++++|.+.++.. ..|+.|++++|++++..|..+.++++|++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4556777776 5421 2478999999998876443 36888999999999888888999999999
Q ss_pred EECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCC-CCCcccccccccccCCCCCCe
Q 041140 136 LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQI-PLSFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 136 L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~l~~L~~ 212 (275)
|++++|.++.. .+..+..+++|++|++++|++. .+|. .+..+++|++|++++|. +....+.. +.++++|++
T Consensus 105 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~ 178 (353)
T 2z80_A 105 LDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----FAGLTFLEE 178 (353)
T ss_dssp EECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----TTTCCEEEE
T ss_pred EECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH----ccCCCCCCE
Confidence 99999999983 3344889999999999999998 5665 78899999999999984 54443444 788899999
Q ss_pred eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
|++++|.+++.. +..+..+++|++|++++|.+... +...+..+++|++|++++|.+++
T Consensus 179 L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 179 LEIDASDLQSYE--PKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEETTCCEEC--TTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCBCTT
T ss_pred EECCCCCcCccC--HHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCcccc
Confidence 999999988873 34678888999999999988654 54445568889999999998875
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=4.8e-21 Score=161.81 Aligned_cols=172 Identities=23% Similarity=0.177 Sum_probs=148.8
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
..++.+++++|.+.+... ..|+.|++++|.+++..+..+.++++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECC
Confidence 579999999999887654 3688999999999987777889999999999999999985 55668999999999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|.+++..+..++.+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.++ ..+..+++|+.|++++|
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV----FDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSS
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCHHH----hcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCC
Confidence 99999666667899999999999999988665544 7889999999999999999853 45788999999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i 275 (275)
.+.+. +++|+.++++.|.++|.|
T Consensus 216 ~~~~~--------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 216 PWDCT--------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CBCCC--------TTTTHHHHHHHHHTGGGB
T ss_pred Ccccc--------CcHHHHHHHHHHhCCCcc
Confidence 88764 447888999999998864
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=171.54 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=155.8
Q ss_pred cCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCC
Q 041140 79 WAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNF 143 (275)
Q Consensus 79 w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l 143 (275)
|..+.|... ...++.|++++|.+..+.. ..|+.|++++|.+++..|..+.++++|++|++++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 456667531 2468899999999876533 3788999999999998899999999999999999999
Q ss_pred CCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140 144 EKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 144 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~ 223 (275)
+.. .+..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+++.
T Consensus 93 ~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 93 KLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA----FSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS----STTCTTCCEEEEESCCCSSC
T ss_pred Ccc-CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh----ccCCCCCCEEECCCCcCccc
Confidence 984 4446789999999999999999888889999999999999999887665555 88899999999999999988
Q ss_pred CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+ ...+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+
T Consensus 168 ~--~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 168 P--TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp C--HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCC
T ss_pred C--hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCcccc
Confidence 5 34678889999999999998876 66677888888888887766543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=9.5e-21 Score=170.86 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=40.5
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh--hhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeE
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF--LGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYL 185 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~--~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L 185 (275)
|++|++++|.+++..|..+.++++|++|++++|.+++. +|.. +..+++|++|++++|.+.+..|.. ++.+++|++|
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 33444444444444444444444444444444444432 2222 444555555555555555444443 4555555555
Q ss_pred EcccCCCC
Q 041140 186 DLSSQIPL 193 (275)
Q Consensus 186 ~Ls~n~~~ 193 (275)
++++|.+.
T Consensus 160 ~L~~n~l~ 167 (455)
T 3v47_A 160 DLTFNKVK 167 (455)
T ss_dssp ECTTCCBS
T ss_pred eCCCCccc
Confidence 55555443
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=3.5e-20 Score=158.10 Aligned_cols=174 Identities=25% Similarity=0.228 Sum_probs=153.9
Q ss_pred CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
..++.++++++.+..++. ..++.|++++|.+++..+..+.++++|++|++++|.++. ++.. ..+++|++|++++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCS
T ss_pred CCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCC
Confidence 568888999988776543 578999999999999888999999999999999999998 5544 7899999999999
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|++. .+|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+ +..+..+++|+.|++++|+
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLP--PGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccC--hhhcccccCCCEEECCCCc
Confidence 9998 78999999999999999999998665555 889999999999999999885 3467789999999999999
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++. ++..+..+++|++|++++|+|+.
T Consensus 160 l~~l-~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 160 LTEL-PAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcc-CHHHhcCcCCCCEEECCCCcCCc
Confidence 9976 77778899999999999999863
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=167.86 Aligned_cols=181 Identities=20% Similarity=0.169 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.+++++|.+..+.. .+|+.|++++|.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceee
Confidence 457788888888765432 3577788888888877777788888888888888888774 444677788888888
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccc-c------------------ccccccCCCCCCeeeccCCCCCCC
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYL-E------------------NLSWLSGLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~-~------------------~l~~l~~l~~L~~L~L~~n~l~~~ 223 (275)
+++|.+....+..+..+++|++|++++|...+..+. . .++.+..+++|+.|++++|.+++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 888887744444566666666666666432222211 1 001134445555555555555554
Q ss_pred CchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 224 SDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 224 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+ +..+..+++|+.|++++|++++. ++..+..+++|++|+|++|+|++
T Consensus 223 ~--~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 223 R--PGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp C--TTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCCC
T ss_pred C--hhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCCc
Confidence 2 23455666666666666666654 55566677777777777777654
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=3.6e-21 Score=177.61 Aligned_cols=189 Identities=20% Similarity=0.257 Sum_probs=135.8
Q ss_pred CcccCceEecCC-----------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEEC
Q 041140 76 CCTWAGVVCNDS-----------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138 (275)
Q Consensus 76 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~L 138 (275)
.|.|.++ |+.. ..+++.+++++|.+.+..+ ..|++|++++|++++..|..+.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4788887 7532 1478999999998876432 36888999999999888888999999999999
Q ss_pred CCCCCCCCCcchhhhCCccCCEEECCCCCCCC-CCcccccCCCCCCeEEcccCCCCCccc-ccccccccCCCCCCeeecc
Q 041140 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLY-LENLSWLSGLSLLKHLDLT 216 (275)
Q Consensus 139 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~ 216 (275)
++|.+++. .|..++.+++|++|++++|.+.+ ..|..++.+++|++|++++|...+..+ .. +.++++|++|+++
T Consensus 82 s~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~l~~L~~L~L~ 156 (549)
T 2z81_A 82 SDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID----FAGLTSLNELEIK 156 (549)
T ss_dssp TTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEE
T ss_pred CCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhh----hhcccccCeeecc
Confidence 99999985 55669999999999999999986 457788999999999999997444443 33 7788899999999
Q ss_pred CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+|.+++.. +..++.+++|++|++++|.+... +...+..+++|++|++++|++++
T Consensus 157 ~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 157 ALSLRNYQ--SQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ETTCCEEC--TTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTT
T ss_pred CCcccccC--hhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccc
Confidence 98888752 23445555555555555444322 22222334455555555554443
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.8e-20 Score=175.05 Aligned_cols=103 Identities=12% Similarity=0.017 Sum_probs=46.7
Q ss_pred EEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 91 VLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 91 v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
++.++++++.+..++. ..|+.|++++|.+++..|..+..+++|++|++++|.+++. .|..++.+++|++|+++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEee
Confidence 3445555554443332 2344455555555544444445555555555555554443 33334444445555554
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~ 194 (275)
+|.+++..+..++.+++|++|++++|.+.+
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 444442211223444444444444444433
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=5.4e-21 Score=172.45 Aligned_cols=137 Identities=21% Similarity=0.201 Sum_probs=122.5
Q ss_pred CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL 210 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L 210 (275)
++|++|++++|.+++. .|..+..+++|++|++++|++.+..|..++.+++|++|++++|.+.+..+.. +..+++|
T Consensus 275 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L 349 (455)
T 3v47_A 275 SGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM----FENLDKL 349 (455)
T ss_dssp SCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG----GTTCTTC
T ss_pred cCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH----hcCcccC
Confidence 6899999999999986 7888999999999999999999878889999999999999999887665555 8899999
Q ss_pred CeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCceeC
Q 041140 211 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNTL 275 (275)
Q Consensus 211 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~i 275 (275)
++|++++|.+++.+ +..+..+++|++|++++|++++. ++..+..+++|++|++++|++++.+
T Consensus 350 ~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 350 EVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCcccccC--hhhccccccccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCC
Confidence 99999999998873 34778899999999999999986 7777899999999999999998853
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.7e-20 Score=159.27 Aligned_cols=190 Identities=20% Similarity=0.179 Sum_probs=130.7
Q ss_pred CCCcccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEEC
Q 041140 74 GNCCTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLEL 138 (275)
Q Consensus 74 ~~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~L 138 (275)
...|.|..+.|... ...++.+++++|.+.++.. ..|+.|++++|.+++..|..+.++++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 34578888888631 2468899999999877543 36888999999999888999999999999999
Q ss_pred CCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC--cccccccccccCCCCCCeeecc
Q 041140 139 SNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS--FLYLENLSWLSGLSLLKHLDLT 216 (275)
Q Consensus 139 s~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~--~~~~~~l~~l~~l~~L~~L~L~ 216 (275)
++|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+.. +.++++|++|+++
T Consensus 108 s~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~~~l~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA----FQGMKKLSYIRIA 179 (330)
T ss_dssp CSSCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG----GGGCTTCCEEECC
T ss_pred CCCcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh----ccCCCCcCEEECC
Confidence 9999886 665543 678888888888876555567777788888887776642 22222 4555555555555
Q ss_pred CCCCCCCCc-------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 217 GVDLSTASD-------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 217 ~n~l~~~~~-------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+|.++..+. .+..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 180 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp SSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS
T ss_pred CCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc
Confidence 555544321 123455566666666666666654 4445666666666666666654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.2e-20 Score=165.50 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=40.8
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchh-hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVF-LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
|+.|++++|.+.+..|..+.++++|++|++++|.++. +|.. +..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 95 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred cCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 4444455555544444444555555555555555544 3332 344555555555555555444444555555555555
Q ss_pred ccCCCC
Q 041140 188 SSQIPL 193 (275)
Q Consensus 188 s~n~~~ 193 (275)
++|.+.
T Consensus 173 ~~n~l~ 178 (390)
T 3o6n_A 173 SSNRLT 178 (390)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555443
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.5e-19 Score=150.82 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=135.0
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
..+.+++++++++ .+|..+. +.++.|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3456788888887 5776554 6899999999999996 6778999999999999999999877778999999999999
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+..+.. +..+++|++|++++|.+++.+. ..+..+++|++|++++|++++. ++..+..+++|++|+++
T Consensus 91 ~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPLGV----FDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCCcccccChhH----hcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECC
Confidence 999988665544 7899999999999999998853 3568899999999999999986 77689999999999999
Q ss_pred cCcCce
Q 041140 268 YNEFDN 273 (275)
Q Consensus 268 ~N~l~g 273 (275)
+|+|++
T Consensus 164 ~N~l~~ 169 (251)
T 3m19_A 164 TNQLQS 169 (251)
T ss_dssp SSCCSC
T ss_pred CCcCCc
Confidence 999976
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1e-19 Score=157.87 Aligned_cols=190 Identities=19% Similarity=0.177 Sum_probs=129.3
Q ss_pred CcccCceEecCC---------CCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCC
Q 041140 76 CCTWAGVVCNDS---------TGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSN 140 (275)
Q Consensus 76 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~ 140 (275)
.|.|..+.|... ...++.+++++|.+..+.. ..|+.|++++|.+++..|..+.++++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 478888888642 2468999999998876533 3688899999999988888999999999999999
Q ss_pred CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC--ccccc-------------------
Q 041140 141 NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS--FLYLE------------------- 199 (275)
Q Consensus 141 n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~--~~~~~------------------- 199 (275)
|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..
T Consensus 112 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 99886 665543 677777777777774444456677777777777665531 11100
Q ss_pred ---------------------ccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCC
Q 041140 200 ---------------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANF 258 (275)
Q Consensus 200 ---------------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l 258 (275)
....+..+++|+.|++++|.+++.+ +..+..+++|++|++++|+++. .|..+..+
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l 263 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNNKLSR--VPAGLPDL 263 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSSCCCB--CCTTGGGC
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCCcCee--cChhhhcC
Confidence 0012455566666666666666653 2245566777777777777763 33356777
Q ss_pred CCcCEEecccCcCce
Q 041140 259 SSLYTLDLSYNEFDN 273 (275)
Q Consensus 259 ~~L~~L~L~~N~l~g 273 (275)
++|++|++++|+|++
T Consensus 264 ~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 264 KLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCCEEECCSSCCCB
T ss_pred ccCCEEECCCCCCCc
Confidence 777777777777764
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.7e-20 Score=149.75 Aligned_cols=132 Identities=23% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCEEECCCCCCCCCCcc-hhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140 133 LVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211 (275)
Q Consensus 133 L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~ 211 (275)
+++|++++|.++.. .| ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.. +..+++|+
T Consensus 34 ~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~ 108 (220)
T 2v70_A 34 TAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLK 108 (220)
T ss_dssp CSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCC
T ss_pred CCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCC
Confidence 34555555555442 11 22444555555555555554333334445555555555555444333322 44455555
Q ss_pred eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+|++++|.+++.+ +..+..+++|++|+|++|++++. ++..+..+++|++|++++|.++
T Consensus 109 ~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 109 TLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence 5555555555442 12344445555555555555543 3444555555555555555544
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=9e-20 Score=149.34 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC
Q 041140 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL 210 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L 210 (275)
+.++.|++++|.++.. .+..+..+++|++|++++|++++..|..+..+++|++|++++|.+....+.. +..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL----FEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhH----ccCCCCC
Confidence 3455555555555542 2234555555555555555555444555555555555555555554332222 4455555
Q ss_pred CeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 211 KHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 211 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+.|++++|.+++.+ +..+..+++|++|+|++|++++. ++..+..+++|++|++++|+++
T Consensus 107 ~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 107 QLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555555542 22444555555555555555554 4444555555555555555543
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=166.96 Aligned_cols=175 Identities=18% Similarity=0.167 Sum_probs=148.5
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~ 164 (275)
.++.+++++|.+..... ..|+.|++++|.+++.+|..+.++++|++|++++|.+++. .+|..+..+++|++|+++
T Consensus 303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 47777888877665442 4788999999999999999999999999999999999861 156779999999999999
Q ss_pred CCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 165 RAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 165 ~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
+|.+.+.+|.. +..+++|++|++++|.+.+..+.. +. ++|+.|++++|.++..|. .+..+++|++|++++
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~--~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC----LP--PRIKVLDLHSNKIKSIPK---QVVKLEALQELNVAS 453 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS----CC--TTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCS
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhh----hc--ccCCEEECCCCcccccch---hhhcCCCCCEEECCC
Confidence 99999768875 788999999999999987665543 32 799999999999997754 455899999999999
Q ss_pred CcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 244 CSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
|++++. ++..+..+++|++|++++|++++.
T Consensus 454 N~l~~l-~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 454 NQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SCCCCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcc-CHHHhccCCcccEEECcCCCCccc
Confidence 999964 665689999999999999999874
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=4.7e-22 Score=171.31 Aligned_cols=161 Identities=22% Similarity=0.206 Sum_probs=131.7
Q ss_pred ccccccCCCCcceeecCccc--cCCCCCCEEECCCCCCCCCCcchhhhCC-----ccCCEEECCCCCCCCCCcccccCCC
Q 041140 108 WLEDYKDETSKLIGKINPSL--LDLKHLVYLELSNNNFEKAQLPVFLGSM-----GSLRHIDLSRAEFTGMIPYQLGNLS 180 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l--~~l~~L~~L~Ls~n~l~~~~~p~~~~~l-----~~L~~L~L~~n~l~~~lp~~l~~l~ 180 (275)
.|+.|++++|++++.+|..+ ..+++|++|++++|.+++ +|..+..+ ++|++|++++|++.+..|..++.++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 57788889999999899876 889999999999999988 57777776 8999999999999977778999999
Q ss_pred CCCeEEcccCCCCCcc--cccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140 181 NLQYLDLSSQIPLSFL--YLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSACSLHNSLPELPIAN 257 (275)
Q Consensus 181 ~L~~L~Ls~n~~~~~~--~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 257 (275)
+|++|++++|.+.+.. +... .+..+++|++|++++|.+++.+..+ ..+..+++|++|++++|++++..+...+..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISAL--CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHS--CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHH--HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 9999999999875532 1120 0378899999999999999764333 234578999999999999998743346677
Q ss_pred CCCcCEEecccCcCc
Q 041140 258 FSSLYTLDLSYNEFD 272 (275)
Q Consensus 258 l~~L~~L~L~~N~l~ 272 (275)
+++|++|++++|.|+
T Consensus 252 l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cCCCCEEECCCCccC
Confidence 899999999999987
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=3.7e-20 Score=172.98 Aligned_cols=159 Identities=19% Similarity=0.134 Sum_probs=107.7
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
.+++.|++++|++++..+..|.++++|++|++++|.|+.. .|..|.++++|++|+|++|++++..+..+.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3566777777777766666777778888888888877763 344677777788888888777744445677777888888
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCC----cC
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSS----LY 262 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~----L~ 262 (275)
+++|.+.+..+.. ++++++|++|++++|.+++.+ .+..++.+++|++|++++|++++. ++..+..+.+ ..
T Consensus 131 Ls~N~l~~l~~~~----~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 131 AVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCC
T ss_pred CCCCcCCCCChhh----hhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCcccccc-ccccccchhhhhhhhh
Confidence 8777776554444 677777888888877777653 234566677777888877777765 4444443332 23
Q ss_pred EEecccCcCc
Q 041140 263 TLDLSYNEFD 272 (275)
Q Consensus 263 ~L~L~~N~l~ 272 (275)
.++++.|.++
T Consensus 205 ~~~ls~n~l~ 214 (635)
T 4g8a_A 205 SLDLSLNPMN 214 (635)
T ss_dssp EEECTTCCCC
T ss_pred hhhcccCccc
Confidence 5666666654
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=4.4e-20 Score=148.53 Aligned_cols=151 Identities=16% Similarity=0.215 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140 90 HVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT 169 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (275)
+++.++++++ ++. .+| .+..+++|++|++++|.++. + +.+..+++|++|++++|.++
T Consensus 45 ~L~~L~l~~n------------------~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 45 SLTYITLANI------------------NVT-DLT-GIEYAHNIKDLTINNIHATN--Y-NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp TCCEEEEESS------------------CCS-CCT-TGGGCTTCSEEEEESCCCSC--C-GGGTTCTTCCEEEEECTTCB
T ss_pred CccEEeccCC------------------Ccc-ChH-HHhcCCCCCEEEccCCCCCc--c-hhhhcCCCCCEEEeECCccC
Confidence 4667777766 665 455 58889999999999997765 3 47889999999999999999
Q ss_pred CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCC-CCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
+..|..++.+++|++|++++|.+.+..+.. +..+++|++|++++|. ++..+ .+..+++|++|++++|++++
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCC
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcC
Confidence 878889999999999999999887655544 8899999999999998 76664 56788999999999999987
Q ss_pred CCCCcccCCCCCcCEEecccCcCcee
Q 041140 249 SLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
. + .+..+++|++|++++|++.+.
T Consensus 174 ~-~--~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 174 Y-R--GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp C-T--TGGGCSSCCEEEECBC-----
T ss_pred h-H--HhccCCCCCEEEeeCcccCCc
Confidence 4 3 688999999999999998763
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=7.5e-20 Score=154.59 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=131.3
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
..++.|++++|++++..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4789999999999988887899999999999999999985 556789999999999999999977778899999999999
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC----
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY---- 262 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~---- 262 (275)
+++|.+.+..+.. +.++++|++|++++|.+++.. ++..+..+++|++|++++|++++. ++..+..+++|+
T Consensus 107 l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 107 AVETNLASLENFP----IGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCE
T ss_pred CCCCCccccCchh----cccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhccccce
Confidence 9999887665545 889999999999999998843 234778889999999999999875 444444444333
Q ss_pred EEecccCcCc
Q 041140 263 TLDLSYNEFD 272 (275)
Q Consensus 263 ~L~L~~N~l~ 272 (275)
.|++++|.++
T Consensus 181 ~L~ls~n~l~ 190 (276)
T 2z62_A 181 SLDLSLNPMN 190 (276)
T ss_dssp EEECCSSCCC
T ss_pred eeecCCCccc
Confidence 5555555554
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=2.5e-20 Score=160.48 Aligned_cols=177 Identities=21% Similarity=0.138 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCCCCCC--------CccccccccCCCCcceeecCccccCC-----CCCCEEECCCCCCCCCCcchhhhCC
Q 041140 89 GHVLELRLGNPFLHDD--------EPFWLEDYKDETSKLIGKINPSLLDL-----KHLVYLELSNNNFEKAQLPVFLGSM 155 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l--------~~~~L~~l~l~~n~l~~~lp~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~~~~l 155 (275)
.+++.+++++|.+.+. ....|+.|++++|++++. |..+..+ ++|++|++++|.+++. .|..++.+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccC
Confidence 5688999999887642 123688899999999887 7777766 8999999999999886 66889999
Q ss_pred ccCCEEECCCCCCCCC--Ccccc--cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140 156 GSLRHIDLSRAEFTGM--IPYQL--GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~--lp~~l--~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 231 (275)
++|++|++++|++.+. +|..+ +.+++|++|++++|.+.+.... ....+.++++|++|++++|.+++.++ ...+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 250 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-CSALAAARVQLQGLDLSHNSLRDAAG-APSCD 250 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-HHHHHHTTCCCSEEECTTSCCCSSCC-CSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-HHHHHhcCCCCCEEECCCCcCCcccc-hhhhh
Confidence 9999999999998765 34455 7899999999999988632111 00114578899999999999998642 12455
Q ss_pred CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
.+++|++|++++|+++. .|..+. ++|++|++++|+|++
T Consensus 251 ~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCTTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSCCCS
T ss_pred hcCCCCEEECCCCccCh--hhhhcc--CCceEEECCCCCCCC
Confidence 67899999999999984 343444 889999999999986
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=162.00 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=111.8
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcc-hhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLP-VFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
|+.|++++|.+....+..+.++++|++|++++|+.... ++ ..+..+++|++|++++|.++ .+| .+..+++|++|++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDL 214 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEEC
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEEC
Confidence 44444445444443333444455555555554222221 22 24666777777777777776 455 3677888888888
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+..+.. +.++++|+.|++++|.+++.+ +..+..+++|+.|+|++|++++. ++..+..+++|+.|+++
T Consensus 215 s~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 215 SGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLH 287 (440)
T ss_dssp TTSCCCEECTTT----TTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTSCCCCC-CTTTTSSCTTCCEEECC
T ss_pred CCCccCccChhh----hccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCCCCCcc-ChhHhccccCCCEEEcC
Confidence 888877665555 889999999999999999884 34678899999999999999986 77788999999999999
Q ss_pred cCcCce
Q 041140 268 YNEFDN 273 (275)
Q Consensus 268 ~N~l~g 273 (275)
+|++..
T Consensus 288 ~Np~~C 293 (440)
T 3zyj_A 288 HNPWNC 293 (440)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 999753
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=4.9e-19 Score=152.22 Aligned_cols=165 Identities=23% Similarity=0.345 Sum_probs=130.8
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
.+++.+++++|.+.++.. ..|+.|++++|.+.+. +.+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 63 ~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECC
Confidence 568888888888777654 3677888888888763 358888888888888888887 444 7888888999998
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|.+++ ++. ++.+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.+. +..+++|++|++++|
T Consensus 138 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 138 LNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNN 205 (308)
T ss_dssp SSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTS
T ss_pred CCccCc-Ccc-ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCC
Confidence 888884 443 7788889999998887764322 6788889999999999888752 567888999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++++. + .+..+++|+.|++++|++++
T Consensus 206 ~l~~~-~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 206 QISDV-S--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCBC-G--GGTTCTTCCEEEEEEEEEEC
T ss_pred ccCcc-c--cccCCCCCCEEEccCCeeec
Confidence 99875 4 37888999999999998876
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=3.6e-20 Score=153.36 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=143.7
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCc-ceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSK-LIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRH 160 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~-l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~ 160 (275)
..++.+++++|.+..+.. .+|+.|++++|. +++..+..+.++++|++|++++ |.++.. .+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCE
Confidence 478999999998876543 368889999997 7765566889999999999998 999884 4467889999999
Q ss_pred EECCCCCCCCCCcccccCCCCCC---eEEcccC-CCCCcccccccccccCCCCCC-eeeccCCCCCCCCchhhhhCCCCC
Q 041140 161 IDLSRAEFTGMIPYQLGNLSNLQ---YLDLSSQ-IPLSFLYLENLSWLSGLSLLK-HLDLTGVDLSTASDWFLVTNMLPS 235 (275)
Q Consensus 161 L~L~~n~l~~~lp~~l~~l~~L~---~L~Ls~n-~~~~~~~~~~l~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~l~~ 235 (275)
|++++|++++ +|. +..+++|+ +|++++| .+.+..+.. +.++++|+ .|++++|.++..+. ..+.. ++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~----~~~l~~L~~~L~l~~n~l~~i~~--~~~~~-~~ 180 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA----FQGLCNETLTLKLYNNGFTSVQG--YAFNG-TK 180 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT----TTTTBSSEEEEECCSCCCCEECT--TTTTT-CE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc----ccchhcceeEEEcCCCCCcccCH--hhcCC-CC
Confidence 9999999985 776 88888888 9999999 777555444 78899999 99999999986653 23333 79
Q ss_pred CcEEeccCCc-CCCCCCCcccCCC-CCcCEEecccCcCce
Q 041140 236 LQVLKLSACS-LHNSLPELPIANF-SSLYTLDLSYNEFDN 273 (275)
Q Consensus 236 L~~L~L~~n~-l~~~~~~~~l~~l-~~L~~L~L~~N~l~g 273 (275)
|+.|++++|+ +++. ++..+..+ ++|++|++++|++++
T Consensus 181 L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCcccc
Confidence 9999999995 8865 77788899 999999999999874
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=9.2e-20 Score=160.11 Aligned_cols=173 Identities=20% Similarity=0.159 Sum_probs=143.2
Q ss_pred EEEcCCCCCCCCCc---cccccccCCCCcceeecCcccc-CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140 93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLL-DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168 (275)
Q Consensus 93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 168 (275)
.++++++.+..++. ..++.|++++|++++..+..+. ++++|++|++++|.++.. .+..+..+++|++|++++|++
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC
Confidence 35555555554432 3578899999999988887787 999999999999999985 556799999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh---CCCCCCcEEeccCCc
Q 041140 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT---NMLPSLQVLKLSACS 245 (275)
Q Consensus 169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---~~l~~L~~L~L~~n~ 245 (275)
.+..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+. ..+ ..+++|+.|+|++|+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNA----FEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCCEEECCSSC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHH----hCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCCEEECCCCC
Confidence 9666667899999999999999998665655 8899999999999999999864 233 578999999999999
Q ss_pred CCCCCCCcccCCCCC--cCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSS--LYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~--L~~L~L~~N~l~g 273 (275)
+++. ++..+..++. ++.|++++|+++.
T Consensus 175 l~~l-~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKL-PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCC-CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCcc-CHHHhhhccHhhcceEEecCCCccC
Confidence 9976 6667788887 4899999999864
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=1.6e-19 Score=168.47 Aligned_cols=178 Identities=18% Similarity=0.131 Sum_probs=126.0
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
.+++.+++++|.+.++.. ..|+.|++++|.+++..|..+.++++|++|++++|.+++. .|..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEE
Confidence 567888888887765433 3577778888888877777788888888888888888775 577788888888888
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCC-cccccccccccCCCCCCeeeccCCCCCCCCc-hhhhhCCCCC-CcEE
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS-FLYLENLSWLSGLSLLKHLDLTGVDLSTASD-WFLVTNMLPS-LQVL 239 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~-L~~L 239 (275)
+++|.+.+..+..++.+++|++|++++|.+.+ ..|.. ++++++|++|++++|.+++.+. ....+.+++. +.++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG----GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHh----HhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 88888876555677888888888888887764 33444 7778888888888888777631 1222222322 4578
Q ss_pred eccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 240 KLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 240 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++++|.+++. ++..+... +|+.|++++|.++|
T Consensus 187 ~l~~n~l~~~-~~~~~~~~-~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 187 DMSLNPIDFI-QDQAFQGI-KLHELTLRGNFNSS 218 (606)
T ss_dssp ECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSCH
T ss_pred eccCCCccee-CcccccCc-eeeeeeccCCccch
Confidence 8888888765 55444443 78888888887764
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=162.53 Aligned_cols=174 Identities=21% Similarity=0.175 Sum_probs=152.2
Q ss_pred EEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140 92 LELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168 (275)
Q Consensus 92 ~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 168 (275)
..++.+++.+..++. ..++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcC
Confidence 357778777665443 4789999999999998889999999999999999999986 688999999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
.+..+..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSS
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCCcCcc
Confidence 9544456899999999999999988766655 889999999999999998874 3467889999999999999988
Q ss_pred CCCCcccCCCCCcCEEecccCcCce
Q 041140 249 SLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
. ++..+..+++|+.|++++|.+++
T Consensus 167 ~-~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 167 I-PTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp C-CHHHHTTCTTCCEEEEESCCCCE
T ss_pred c-ChhHhcccCCCcEEeCCCCcCcE
Confidence 6 77779999999999999999876
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.9e-19 Score=168.97 Aligned_cols=167 Identities=17% Similarity=0.048 Sum_probs=138.9
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
.+++.|++++|.+..+.. ..|+.|++++|.+++..|..+.++++|++|++++|.++.. .+..+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEE
Confidence 579999999999887665 3688899999999998898999999999999999999983 334699999999999
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEecc
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 242 (275)
+++|.+.+..|..++.+++|++|++++|.+.+..+.. +.++++|++|++++|.+++.+........+++|++|+++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 9999998766678999999999999999888766655 788999999999999999885322223356899999999
Q ss_pred CCcCCCCCCCcccCCCCCc
Q 041140 243 ACSLHNSLPELPIANFSSL 261 (275)
Q Consensus 243 ~n~l~~~~~~~~l~~l~~L 261 (275)
+|.+++. ++..+..+++|
T Consensus 180 ~n~l~~~-~~~~~~~l~~L 197 (680)
T 1ziw_A 180 SNQIKEF-SPGCFHAIGRL 197 (680)
T ss_dssp TCCCCCB-CTTGGGGSSEE
T ss_pred CCccccc-Chhhhhhhhhh
Confidence 9999887 55556554433
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.1e-18 Score=141.23 Aligned_cols=146 Identities=23% Similarity=0.278 Sum_probs=122.8
Q ss_pred cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY 197 (275)
Q Consensus 118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 197 (275)
+++ .+|..+ .++|++|++++|.++.. .+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+
T Consensus 18 ~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 18 GRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred Ccc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 554 345433 46899999999999985 55567899999999999999996555567899999999999999886554
Q ss_pred ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
.. +..+++|++|++++|.+++.+. ..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++.
T Consensus 94 ~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 94 GV----FDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp TT----TTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCC
T ss_pred hH----hcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecC
Confidence 44 7889999999999999998853 3578899999999999999986 776789999999999999998874
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=1.2e-19 Score=169.27 Aligned_cols=158 Identities=17% Similarity=0.095 Sum_probs=95.5
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.++.|++++|.+++..|..+.++++|++|++++|.++.. .|..|.++++|++|++++|++.+..|..++.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 455556666666665566666666666666666666654 4556666666666666666666555666666666666666
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcC--EEe
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLY--TLD 265 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~ 265 (275)
++|.+.+..+.. +.++++|++|++++|.+++.+. + .+..+++|++|++++|.+++. ++..++.+++|+ .|+
T Consensus 113 ~~n~i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 113 IQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNAIHYL-SKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TTSCCSCGGGSC----CTTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSCCCEE-CHHHHHTTTTCCSEEEE
T ss_pred cccCcccCCcch----hccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCccccc-ChhhhhhhcccceeEEe
Confidence 666665443333 5666666666666666665421 1 222356666666666666654 444566666666 666
Q ss_pred cccCcCce
Q 041140 266 LSYNEFDN 273 (275)
Q Consensus 266 L~~N~l~g 273 (275)
+++|.+++
T Consensus 186 l~~n~l~~ 193 (606)
T 3t6q_A 186 LNGNDIAG 193 (606)
T ss_dssp CTTCCCCE
T ss_pred cCCCccCc
Confidence 66666654
No 52
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.4e-19 Score=150.78 Aligned_cols=165 Identities=24% Similarity=0.227 Sum_probs=142.2
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
.+++.++++++.+.+++. .+|+.|++++|++++..+ +.++++|++|++++|.+++ +|. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECC
Confidence 468899999998877654 368889999999987555 8999999999999999987 554 8999999999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|++.+ + +.+..+++|++|++++|.+.+. . .+..+++|++|++++|.+++.++ +..+++|+.|++++|
T Consensus 121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--T----VLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN 188 (291)
T ss_dssp TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--h----hhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCC
Confidence 999985 4 5688999999999999988754 2 28899999999999999999852 778999999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
.+++. + .+..+++|+.|++++|+++.
T Consensus 189 ~i~~l--~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL--R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC--G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC--h-hhccCCCCCEEECcCCcccC
Confidence 99874 3 48999999999999998764
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.6e-19 Score=154.22 Aligned_cols=153 Identities=20% Similarity=0.202 Sum_probs=79.8
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCC--CCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEK--AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~--~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
|+.|++++|.+.+..+..+.++++|++|++++|.++. . .+..+..+++|++|++++|.+. .+|..+. ++|++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH 198 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB-CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc-ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence 3444444444443333334445555555555555432 1 3334444555555555544444 2333221 4444444
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 266 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 266 (275)
+++|.+.+..+.. +..+++|+.|++++|.+++.+ +..+..+++|++|++++|+++. .|..+..+++|++|++
T Consensus 199 l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 199 LDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYL 270 (330)
T ss_dssp CTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEEC
T ss_pred CCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEEC
Confidence 4444444332322 566667777777777766653 1244556667777777776663 3335666667777777
Q ss_pred ccCcCce
Q 041140 267 SYNEFDN 273 (275)
Q Consensus 267 ~~N~l~g 273 (275)
++|+|++
T Consensus 271 ~~N~i~~ 277 (330)
T 1xku_A 271 HNNNISA 277 (330)
T ss_dssp CSSCCCC
T ss_pred CCCcCCc
Confidence 7776654
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=9.1e-19 Score=158.14 Aligned_cols=161 Identities=19% Similarity=0.107 Sum_probs=129.3
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
.+++.|++++|++++..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 5789999999999999899999999999999999999986 668899999999999999999965556789999999999
Q ss_pred cccCCCCCccccc----------------cc-----ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 187 LSSQIPLSFLYLE----------------NL-----SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 187 Ls~n~~~~~~~~~----------------~l-----~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
+++|.+....+.. .+ ..+..+++|++|++++|.+++.+ .+..+++|+.|++++|.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCc
Confidence 9999887443322 00 12445667777777777777664 35667788888888888
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++. ++..+..+++|++|++++|++++
T Consensus 230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 230 FPEI-RPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CSEE-CGGGGTTCTTCCEEECTTSCCCE
T ss_pred Cccc-CcccccCccCCCEEEeCCCcCce
Confidence 8776 66678888888888888888765
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=3.9e-19 Score=164.75 Aligned_cols=175 Identities=19% Similarity=0.178 Sum_probs=148.6
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~ 164 (275)
.++.+++++|.+..... ..|+.|++++|.+++.+|..+.++++|++|++++|.+++. .+|..+..+++|++|+++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 47888888888766442 4788999999999999999999999999999999999973 134678999999999999
Q ss_pred CCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 165 RAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 165 ~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
+|++.+.+|.. +..+++|++|++++|.+.+..+.. +. ++|+.|++++|+++..|. .+..+++|++|++++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~--~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC----LP--PKVKVLDLHNNRIMSIPK---DVTHLQALQELNVAS 482 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS----CC--TTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCS
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh----hc--CcCCEEECCCCcCcccCh---hhcCCCCCCEEECCC
Confidence 99999867764 788999999999999987655443 22 699999999999997764 555899999999999
Q ss_pred CcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 244 CSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
|++++. ++..+..+++|++|++++|++++.
T Consensus 483 N~l~~l-~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 483 NQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCCC-CTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCC-CHHHHhcCCCCCEEEecCCCcCCC
Confidence 999964 665589999999999999999874
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5.3e-19 Score=151.99 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=142.2
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
.+++.++++++.+..++. ..|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECC
Confidence 468999999998877654 368889999999986544 8999999999999999987 54 68899999999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|++++ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.+. +..+++|+.|++++|
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDN 183 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCcCcc------ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCC
Confidence 999985 554 8999999999999998875432 6789999999999999998752 778999999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
++++. ++ +..+++|++|++++|++++.
T Consensus 184 ~l~~~-~~--l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 184 KISDI-SP--LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CCCCC-GG--GGGCTTCCEEECTTSCCCBC
T ss_pred ccCcC-hh--hcCCCCCCEEEccCCccCcc
Confidence 99875 43 88999999999999999863
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=5.4e-19 Score=164.94 Aligned_cols=180 Identities=25% Similarity=0.232 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEEC
Q 041140 90 HVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDL 163 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L 163 (275)
.++.+++++|.+.++.. ..|+.|++++|.++ .+|..+.++++|++|++++|.++.. .|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEEC
Confidence 57788888877766543 35677777777776 6777777777788888887777764 5566777777777777
Q ss_pred CCCCCCCCCccc-ccCCCCCCeEEcccCCCCCcc--ccc--------------------ccccccCCCCCCeeeccCCCC
Q 041140 164 SRAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFL--YLE--------------------NLSWLSGLSLLKHLDLTGVDL 220 (275)
Q Consensus 164 ~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~--~~~--------------------~l~~l~~l~~L~~L~L~~n~l 220 (275)
++|.+.+.+|.. +..+++|++|++++|.+.+.. +.. ....+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 777776655543 566666666666666554332 111 001144555556666665555
Q ss_pred CCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 221 STASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 221 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++... ...+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++++
T Consensus 413 ~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 413 KVKDA-QSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp ECCTT-CCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCccc-chhhhCcccCCEEECCCCccCCc-CHHHHhCCCCCCEEECCCCCCCc
Confidence 54421 12355667777777777777665 55567777777777777777765
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=2e-20 Score=176.03 Aligned_cols=173 Identities=15% Similarity=0.128 Sum_probs=124.2
Q ss_pred CcEEEEEcCCCCCCC------------------CC-------ccccccccCCCCcceeecCccccCCCCCCEEECCCCC-
Q 041140 89 GHVLELRLGNPFLHD------------------DE-------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN- 142 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~------------------l~-------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~- 142 (275)
..++.+++++|.+.+ ++ -..|+.|++++|.+.+.+|..++++++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 578999999999887 32 2367889999999999999999999999999999998
Q ss_pred CCC-CCcchhhhCC------ccCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCCCCCcccccccccccCCCCCCee
Q 041140 143 FEK-AQLPVFLGSM------GSLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHL 213 (275)
Q Consensus 143 l~~-~~~p~~~~~l------~~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L 213 (275)
+++ . +|..++.+ ++|++|++++|+++ .+|. .++.+++|++|++++|.+.|..| . +..+++|++|
T Consensus 286 l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L 358 (636)
T 4eco_A 286 ISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASL 358 (636)
T ss_dssp SCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEE
T ss_pred Ccccc-chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEE
Confidence 887 6 89888887 89999999999999 8998 89999999999999998876665 3 4555555555
Q ss_pred eccCCCCCCCCchhhhhCCCCC-CcEEeccCCcCCCCCCCcccCCCC--CcCEEecccCcCce
Q 041140 214 DLTGVDLSTASDWFLVTNMLPS-LQVLKLSACSLHNSLPELPIANFS--SLYTLDLSYNEFDN 273 (275)
Q Consensus 214 ~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~--~L~~L~L~~N~l~g 273 (275)
++++|.++..|. .+..+++ |++|++++|.++. .|..+..++ +|++|++++|.++|
T Consensus 359 ~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 359 NLAYNQITEIPA---NFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ECCSSEEEECCT---TSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred ECCCCccccccH---hhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCC
Confidence 555555553322 3344444 5555555555442 222333322 44444444444443
No 59
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=3.5e-21 Score=183.49 Aligned_cols=215 Identities=19% Similarity=0.088 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHhcCCC-CCCCCCCC--CCCCCcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCccee-
Q 041140 46 CIQSEREALLRFKQDLKD-PANRLALW--SDGNCCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIG- 121 (275)
Q Consensus 46 ~~~~~~~~L~~~~~~~~~-~~~~~~~W--~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~- 121 (275)
....+++++.+++.+... .+.....| .....+.|.++.+.. ++++.+++.++.+.......++.++++.|.+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence 345567788888877622 23334457 334567788887764 789999998888766544444445555444433
Q ss_pred --------ecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCC
Q 041140 122 --------KINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 122 --------~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
..|..+..++.|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+.
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 346678889999999999999985 8888889999999999999999 89999999999999999999987
Q ss_pred CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCC-CcCEEecccCcCc
Q 041140 194 SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS-SLYTLDLSYNEFD 272 (275)
Q Consensus 194 ~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L~L~~N~l~ 272 (275)
.+|.. ++++++|++|+|++|.++..|. .++.+++|+.|+|++|.+++. ++..+..+. .+..+++++|.++
T Consensus 284 -~lp~~----~~~l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 284 -SLPAE----LGSCFQLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEKQ-FLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp -SCCSS----GGGGTTCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCSH-HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred -ccChh----hcCCCCCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCCC-ChHHHhhcchhhhHHhhccCccc
Confidence 55665 8899999999999999987754 588899999999999999886 444443221 1122445555554
Q ss_pred ee
Q 041140 273 NT 274 (275)
Q Consensus 273 g~ 274 (275)
|.
T Consensus 355 ~~ 356 (727)
T 4b8c_D 355 IP 356 (727)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=5.5e-19 Score=156.45 Aligned_cols=178 Identities=15% Similarity=0.076 Sum_probs=122.3
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.++++++.+..++. ..|+.|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEE
Confidence 456777888777666544 3677888888888877777788888888888888888875 566678888888888
Q ss_pred CCCCCCCCCCccc-ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc----------------
Q 041140 163 LSRAEFTGMIPYQ-LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD---------------- 225 (275)
Q Consensus 163 L~~n~l~~~lp~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~---------------- 225 (275)
+++|.+. .+|.. ++.+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+.
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhh----ccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence 8888887 45554 578888888888888776554443 5555666666666655543210
Q ss_pred -----------------------------------------hhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140 226 -----------------------------------------WFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 264 (275)
Q Consensus 226 -----------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 264 (275)
....+..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERL 277 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEE
Confidence 001234456777777777777665 55566667777777
Q ss_pred ecccCcCce
Q 041140 265 DLSYNEFDN 273 (275)
Q Consensus 265 ~L~~N~l~g 273 (275)
++++|++++
T Consensus 278 ~L~~n~l~~ 286 (390)
T 3o6n_A 278 YISNNRLVA 286 (390)
T ss_dssp ECCSSCCCE
T ss_pred ECCCCcCcc
Confidence 777776654
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=175.31 Aligned_cols=189 Identities=19% Similarity=0.147 Sum_probs=154.7
Q ss_pred cccCceEecCCCCcEEEEEcCCCCCCCCCc------cccccccCCCCcceeec-CccccCCCCCCEEECCCCCCCCCCcc
Q 041140 77 CTWAGVVCNDSTGHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKI-NPSLLDLKHLVYLELSNNNFEKAQLP 149 (275)
Q Consensus 77 c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~p 149 (275)
|.|..|.+ ...+++.|++++|.+..+.. ..|+.|++++|...+.+ |..+.++++|++|++++|.+++. .|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p 90 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HP 90 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CH
Confidence 45666666 35789999999999876533 36888999999888888 66899999999999999999986 78
Q ss_pred hhhhCCccCCEEECCCCCCCCCCccc--ccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchh
Q 041140 150 VFLGSMGSLRHIDLSRAEFTGMIPYQ--LGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWF 227 (275)
Q Consensus 150 ~~~~~l~~L~~L~L~~n~l~~~lp~~--l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~ 227 (275)
..+..+++|++|++++|.+++.+|.. ++++++|++|++++|.+.+..+.. .++++++|++|++++|.+++.. +
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~L~~L~~L~Ls~N~i~~~~--~ 165 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP---SFGKLNSLKSIDFSSNQIFLVC--E 165 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG---GGGTCSSCCEEEEESSCCCCCC--S
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch---hHhhCCCCCEEECCCCcCCeeC--H
Confidence 89999999999999999999877765 899999999999999887654422 2889999999999999998873 2
Q ss_pred hhhCCC--CCCcEEeccCCcCCCCCCCcccCCCCC------cCEEecccCcCcee
Q 041140 228 LVTNML--PSLQVLKLSACSLHNSLPELPIANFSS------LYTLDLSYNEFDNT 274 (275)
Q Consensus 228 ~~~~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~------L~~L~L~~N~l~g~ 274 (275)
..+..+ ++|+.|++++|.+.+. .+..+..+++ |+.|++++|.+++.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSCCC-CCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred HHcccccCCccceEECCCCccccc-cccchhhcCCccccCceeEEecCCCcCchh
Confidence 233334 7899999999999887 4445666655 99999999987653
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4.8e-19 Score=165.43 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=89.4
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHI 161 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L 161 (275)
..++.|++++|.+.++.. ..|+.|++++|.+++..|..++++++|++|++++|.++. +|. .+..+++|++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEE
Confidence 468899999998876543 368889999999999888888999999999999999997 554 46899999999
Q ss_pred ECCCCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140 162 DLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194 (275)
Q Consensus 162 ~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~ 194 (275)
++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 999999998778889999999999999997764
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=1.2e-19 Score=169.27 Aligned_cols=157 Identities=23% Similarity=0.256 Sum_probs=91.7
Q ss_pred ccccccCCCCcceeecC-ccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCC-CcccccCCCCCCeE
Q 041140 108 WLEDYKDETSKLIGKIN-PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGM-IPYQLGNLSNLQYL 185 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-lp~~l~~l~~L~~L 185 (275)
.|+.|++++|.+.+..| ..+.++++|++|++++|.+++. .|..+..+++|++|++++|.+.+. +|..++.+++|++|
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 34445555555555544 3455555666666666655554 555555666666666666666542 45556666666666
Q ss_pred EcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCC-CcCEE
Q 041140 186 DLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFS-SLYTL 264 (275)
Q Consensus 186 ~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-~L~~L 264 (275)
++++|.+.+..+.. +..+++|++|++++|.+++.. +..+..+++|+.|++++|+++.. ++ .+..++ +|++|
T Consensus 479 ~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~-p~-~~~~l~~~L~~l 550 (606)
T 3vq2_A 479 DLSKCQLEQISWGV----FDTLHRLQLLNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIETS-KG-ILQHFPKSLAFF 550 (606)
T ss_dssp ECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCEE--GGGTTTCTTCCEEECTTSCCCCE-ES-CGGGSCTTCCEE
T ss_pred ECCCCcCCccChhh----hcccccCCEEECCCCcCCCcC--HHHccCCCcCCEEECCCCcCccc-CH-hHhhhcccCcEE
Confidence 66666555444443 566666666666666666652 33556666666666666666642 33 355555 46677
Q ss_pred ecccCcCce
Q 041140 265 DLSYNEFDN 273 (275)
Q Consensus 265 ~L~~N~l~g 273 (275)
++++|++++
T Consensus 551 ~l~~N~~~c 559 (606)
T 3vq2_A 551 NLTNNSVAC 559 (606)
T ss_dssp ECCSCCCCC
T ss_pred EccCCCccc
Confidence 777666654
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=155.94 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=150.9
Q ss_pred ceEecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCcc
Q 041140 81 GVVCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGS 157 (275)
Q Consensus 81 gv~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 157 (275)
...|.. ..+ .+.+++.+..++. ..++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++
T Consensus 27 ~~~C~~--~~~--c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 101 (353)
T 2z80_A 27 SLSCDR--NGI--CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGS 101 (353)
T ss_dssp CCEECT--TSE--EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred CCCCCC--CeE--eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCC
Confidence 455643 233 7889888777654 4799999999999987777899999999999999999985 5678999999
Q ss_pred CCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc-ccccccccCCCCCCeeeccCCC-CCCCCchhhhhCCCCC
Q 041140 158 LRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY-LENLSWLSGLSLLKHLDLTGVD-LSTASDWFLVTNMLPS 235 (275)
Q Consensus 158 L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~ 235 (275)
|++|++++|++++..+..++.+++|++|++++|.+.+... .. +.++++|++|++++|. +...+ +..+..+++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~ 175 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL----FSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTF 175 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS----CTTCTTCCEEEEEESSSCCEEC--TTTTTTCCE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh----hccCCCCcEEECCCCccccccC--HHHccCCCC
Confidence 9999999999995444458999999999999998875433 23 7889999999999994 66553 346788999
Q ss_pred CcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 236 LQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 236 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
|++|++++|.+++. .+..+..+++|++|++++|.++.
T Consensus 176 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 176 LEELEIDASDLQSY-EPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp EEEEEEEETTCCEE-CTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCEEECCCCCcCcc-CHHHHhccccCCeecCCCCcccc
Confidence 99999999999987 67789999999999999998753
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=9.3e-20 Score=166.25 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc-CCCCCCeEEcccCCCCCcccccccccccCCCC
Q 041140 131 KHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSL 209 (275)
Q Consensus 131 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~ 209 (275)
++|++|++++|.+++. .|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+.+..+ ...+++
T Consensus 120 ~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~~l~~ 192 (487)
T 3oja_A 120 QGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG------QVVFAK 192 (487)
T ss_dssp SSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC------CCCCTT
T ss_pred CCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc------cccCCC
Confidence 4445555555555553 344555566666666666666655555554 45666666666665543311 334666
Q ss_pred CCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 210 LKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 210 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
|+.|++++|.+++.++ .+..+++|+.|++++|.+++. + ..+..+++|+.|++++|.++
T Consensus 193 L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~l-p-~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 193 LKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLI-E-KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEE-C-TTCCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCccc-c-hhhccCCCCCEEEcCCCCCc
Confidence 7777777777766543 355666777777777777653 3 34666777777777777765
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=5.4e-19 Score=153.26 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 90 HVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
+++.++++++.+..++. ..++.|++++|.+.+..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCC
Confidence 46778999988766543 4789999999999988888999999999999999999986 6889999999999999999
Q ss_pred CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCC
Q 041140 167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLS 221 (275)
Q Consensus 167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~ 221 (275)
.+. .+|..+. ++|++|++++|.+.+..+.. +.++++|+.|++++|.++
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGV----FSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGG----GSSCSSCCEEECCSCCCB
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhH----hCCCccCCEEECCCCccc
Confidence 998 7887665 89999999999887554433 566666776666666654
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=165.95 Aligned_cols=177 Identities=23% Similarity=0.213 Sum_probs=147.5
Q ss_pred CcEEEEEcCCCCCCCCC--------ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcc-hhhhCCccCC
Q 041140 89 GHVLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLP-VFLGSMGSLR 159 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~ 159 (275)
..++.+++++|.+.... ...|+.|++++|.+.+..+. +..+++|++|++++|.+.+. .| ..+..+++|+
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~ 424 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLI 424 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC-TTSCTTTTCTTCC
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc-cchhhhhcCCCCC
Confidence 45777777777766542 13677888888888765554 88899999999999998875 33 4688899999
Q ss_pred EEECCCCCCCCCCcccccCCCCCCeEEcccCCCC-CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcE
Q 041140 160 HIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPL-SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQV 238 (275)
Q Consensus 160 ~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~-~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 238 (275)
+|++++|.+.+..|..+..+++|++|++++|.+. +..|.. +..+++|+.|++++|.+++.+ +..+..+++|++
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 498 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQV 498 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCE
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh----hhcccCCCEEECCCCccccCC--hhhhhcccCCCE
Confidence 9999999999888888999999999999999875 345544 889999999999999999873 347788999999
Q ss_pred EeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 239 LKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 239 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
|++++|++++. ++..+..+++|++|++++|+++|.
T Consensus 499 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 499 LNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp EECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCC
Confidence 99999999987 777899999999999999999885
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.4e-18 Score=159.50 Aligned_cols=70 Identities=29% Similarity=0.220 Sum_probs=39.9
Q ss_pred ccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 204 LSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+.++++|+.|++++|.+++.+..+..+..+++|++|++++|++++.+++..+..+++|++|++++|+++|
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 4444555555555555555433344456666666666666666654344455566666666666666654
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=156.27 Aligned_cols=153 Identities=18% Similarity=0.102 Sum_probs=85.5
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCC---CcchhhhCCccCCEEECCCCCCCCCCcc----cccCCC
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKA---QLPVFLGSMGSLRHIDLSRAEFTGMIPY----QLGNLS 180 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~lp~----~l~~l~ 180 (275)
.|+.|++++|++.+..|..+..+++|++|++++|.+.+. ..+..+..+++|++|++++|+++ .++. .++.++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence 445555555555555555555555555555555554321 00111234555555555555554 2232 134556
Q ss_pred CCCeEEcccCCCCCcccccccccccCC---CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCC
Q 041140 181 NLQYLDLSSQIPLSFLYLENLSWLSGL---SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIAN 257 (275)
Q Consensus 181 ~L~~L~Ls~n~~~~~~~~~~l~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 257 (275)
+|++|++++|.+.+..|.. +..+ ++|++|++++|.++..|. .+ .++|++|++++|++++. +. +..
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~----~~~~~~~~~L~~L~Ls~N~l~~lp~---~~--~~~L~~L~Ls~N~l~~~-~~--~~~ 292 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPS----APRCMWSSALNSLNLSFAGLEQVPK---GL--PAKLRVLDLSSNRLNRA-PQ--PDE 292 (310)
T ss_dssp CCSSEECTTSCCCCCCCSC----CSSCCCCTTCCCEECCSSCCCSCCS---CC--CSCCSCEECCSCCCCSC-CC--TTS
T ss_pred CCCEEECCCCCCCccchhh----HHhccCcCcCCEEECCCCCCCchhh---hh--cCCCCEEECCCCcCCCC-ch--hhh
Confidence 6666666666665544433 3333 577777777777775543 22 25777777777777763 22 466
Q ss_pred CCCcCEEecccCcCce
Q 041140 258 FSSLYTLDLSYNEFDN 273 (275)
Q Consensus 258 l~~L~~L~L~~N~l~g 273 (275)
+++|+.|++++|+|+.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 6777777777777764
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=155.88 Aligned_cols=177 Identities=17% Similarity=0.079 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCCCCC--------ccccccccCCCCcceeecC----ccccCCCCCCEEECCCCCCCCCCcchhhhCCccC
Q 041140 91 VLELRLGNPFLHDDE--------PFWLEDYKDETSKLIGKIN----PSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSL 158 (275)
Q Consensus 91 v~~l~l~~~~~~~l~--------~~~L~~l~l~~n~l~~~lp----~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L 158 (275)
++++++++|.+.+.. ...|+.|++++|.+++..+ ..+..+++|++|++++|.+++. .|..+..+++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCC
Confidence 556666665544321 1245556666666655443 2234456666666666666554 44555566666
Q ss_pred CEEECCCCCCCCC--Cc--ccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC-CchhhhhCCC
Q 041140 159 RHIDLSRAEFTGM--IP--YQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA-SDWFLVTNML 233 (275)
Q Consensus 159 ~~L~L~~n~l~~~--lp--~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l 233 (275)
++|++++|++.+. ++ ..++.+++|++|++++|.++..... ....+..+++|++|++++|.+++. |.....+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 6666666665431 11 1224556666666666655421110 000134566777777777777765 3211122223
Q ss_pred CCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 234 PSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 234 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++|++|++++|+++.. +. .+. ++|++|++++|+|++
T Consensus 251 ~~L~~L~Ls~N~l~~l-p~-~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 251 SALNSLNLSFAGLEQV-PK-GLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TTCCCEECCSSCCCSC-CS-CCC--SCCSCEECCSCCCCS
T ss_pred CcCCEEECCCCCCCch-hh-hhc--CCCCEEECCCCcCCC
Confidence 5777777777777632 33 332 677777777777765
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=140.87 Aligned_cols=150 Identities=17% Similarity=0.130 Sum_probs=125.4
Q ss_pred EEEcCCCCCCCCCc---cccccccCCCCcceeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140 93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168 (275)
Q Consensus 93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 168 (275)
.++++++.+..++. ..++.|++++|++++..|. .+.++++|++|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCcc
Confidence 45556665554432 3567889999999988664 578999999999999999985 555899999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++.+ +..+..+++|+.|++++|.+.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcC
Confidence 9777777999999999999999998776666 889999999999999999984 3477889999999999999876
Q ss_pred C
Q 041140 249 S 249 (275)
Q Consensus 249 ~ 249 (275)
.
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 5
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.3e-19 Score=173.27 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=144.6
Q ss_pred CcEEEEEcCCCCCCC------------------CC-------ccccccccCCCCcceeecCccccCCCCCCEEECCCCC-
Q 041140 89 GHVLELRLGNPFLHD------------------DE-------PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN- 142 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~------------------l~-------~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~- 142 (275)
..++.|++++|.+.+ ++ ..+|+.|++++|++.+.+|..++++++|++|++++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 578999999999887 32 2358889999999999999999999999999999998
Q ss_pred CCC-CCcchhhhCCc-------cCCEEECCCCCCCCCCcc--cccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140 143 FEK-AQLPVFLGSMG-------SLRHIDLSRAEFTGMIPY--QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 143 l~~-~~~p~~~~~l~-------~L~~L~L~~n~l~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~ 212 (275)
+++ . +|..++.++ +|++|++++|.++ .+|. .++.+++|++|++++|.+. ..| . +..+++|+.
T Consensus 528 lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~----~~~L~~L~~ 599 (876)
T 4ecn_A 528 ISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A----FGTNVKLTD 599 (876)
T ss_dssp SCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C----CCTTSEESE
T ss_pred ccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h----hcCCCcceE
Confidence 887 6 888887776 9999999999999 8998 8999999999999999887 555 3 888999999
Q ss_pred eeccCCCCCCCCchhhhhCCCCC-CcEEeccCCcCCCCCCCcccCCCCC--cCEEecccCcCcee
Q 041140 213 LDLTGVDLSTASDWFLVTNMLPS-LQVLKLSACSLHNSLPELPIANFSS--LYTLDLSYNEFDNT 274 (275)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~--L~~L~L~~N~l~g~ 274 (275)
|++++|.++..|. .+..+++ |+.|++++|.++. .|..+..++. |+.|++++|+++|.
T Consensus 600 L~Ls~N~l~~lp~---~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 600 LKLDYNQIEEIPE---DFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp EECCSSCCSCCCT---TSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred EECcCCccccchH---HHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCc
Confidence 9999999985543 5777888 9999999998883 3445665543 88888888888764
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.3e-18 Score=162.80 Aligned_cols=174 Identities=20% Similarity=0.147 Sum_probs=146.4
Q ss_pred EEEcCCCCCCCCC---ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140 93 ELRLGNPFLHDDE---PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT 169 (275)
Q Consensus 93 ~l~l~~~~~~~l~---~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (275)
.++.+++.+..++ +.+++.|++++|++++..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|.++
T Consensus 8 ~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC
T ss_pred eeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC
Confidence 3555555554433 25799999999999987777899999999999999999997 7889999999999999999999
Q ss_pred CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+..+..++.+++|++|++++|.+.+..+.. +.++++|++|++++|.+++.+ +..+..+++|++|++++|.+++.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCB
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCccccc
Confidence 543347999999999999999987665555 889999999999999999874 34678899999999999999886
Q ss_pred CCCcccC--CCCCcCEEecccCcCcee
Q 041140 250 LPELPIA--NFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 250 ~~~~~l~--~l~~L~~L~L~~N~l~g~ 274 (275)
++..+. .+++|++|++++|.+++.
T Consensus 161 -~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 161 -KSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp -CHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred -CHHHhhccccccccEEECCCCccccc
Confidence 554443 568999999999998763
No 74
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.7e-18 Score=139.09 Aligned_cols=136 Identities=19% Similarity=0.143 Sum_probs=116.0
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
..++.|++++|++++..+..+..+++|++|++++|.++.. .|..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4678888888899987777899999999999999999986 688899999999999999999944334568899999999
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+++|.+.+..+.. +..+++|++|++++|.+++.+. ..+..+++|+.|++++|.+...
T Consensus 111 L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 111 LNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCCcCCC
Confidence 9999988776665 8889999999999999999853 4577889999999999988653
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=1.1e-18 Score=160.87 Aligned_cols=171 Identities=20% Similarity=0.185 Sum_probs=148.3
Q ss_pred EEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCC
Q 041140 94 LRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTG 170 (275)
Q Consensus 94 l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 170 (275)
.+.+++.+..++. ..++.|++++|++++..|..+.++++|++|++++|.+++. .|..+..+++|++|++++|++++
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCc
Confidence 6888888776554 4799999999999998899999999999999999999986 66789999999999999999997
Q ss_pred CCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCC-CchhhhhCCCCCCcEEeccCCcCCC
Q 041140 171 MIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTA-SDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 171 ~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
..|..++.+++|++|++++|.+.+. .+.. +.++++|++|++++|.+.+. + +..+..+++|++|++++|.+++
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----FPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCS----CTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETTCCE
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhh----hhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCcccc
Confidence 7777799999999999999988753 2333 88999999999999985443 3 2467889999999999999998
Q ss_pred CCCCcccCCCCCcCEEecccCcCc
Q 041140 249 SLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
. .+..+..+++|++|++++|.++
T Consensus 163 ~-~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 163 Y-QSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp E-CTTTTTTCSEEEEEEEECSBST
T ss_pred c-ChhhhhccccCceEecccCccc
Confidence 7 6668999999999999999864
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=5e-19 Score=161.42 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=138.4
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
..++.|++++|.+.+..+ ..|+.|++++|.+++..+ .++|++|++++|.+++. +. ..+++|++|+++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~--~~--~~l~~L~~L~L~ 128 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRV--SC--SRGQGKKNIYLA 128 (487)
T ss_dssp TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCE--EE--CCCSSCEEEECC
T ss_pred CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCC--Cc--cccCCCCEEECC
Confidence 578999999998765322 368889999999986443 38999999999999984 43 357889999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc-CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS-GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSA 243 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 243 (275)
+|.+++..|..++.+++|++|++++|.+.+..+.. +. .+++|+.|++++|.+++.+. ...+++|+.|+|++
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSS 200 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCS
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccccc----cccCCCCCEEECCC
Confidence 99999888888999999999999999988766554 54 78999999999999998753 34589999999999
Q ss_pred CcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 244 CSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 244 n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
|.+++. ++ .+..+++|+.|++++|.|++
T Consensus 201 N~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 201 NKLAFM-GP-EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp SCCCEE-CG-GGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCC-CH-hHcCCCCccEEEecCCcCcc
Confidence 999985 55 48899999999999999986
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=159.44 Aligned_cols=173 Identities=20% Similarity=0.181 Sum_probs=113.3
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
.+++.|++++|.+.++.. ..|+.|++++|++++..|..+.++++|++|++++|.++.. .|..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence 457777888777655432 3566777777777766666677777777777777777764 446677777777777
Q ss_pred CCCCCCCCCCcccccCCCCCCeEEcccCCCCCc-ccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCC----c
Q 041140 163 LSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF-LYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSL----Q 237 (275)
Q Consensus 163 L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~-~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L----~ 237 (275)
+++|.+.+..+..++.+++|++|++++|.+.+. .|.. +.++++|++|++++|.+++.+ +..++.+++| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG----GGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhh----hcccCCCCEEeCcCCccceec--HHHccchhccchhhh
Confidence 777777643333577777777777777766542 3444 667777777777777776653 1233344444 6
Q ss_pred EEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140 238 VLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270 (275)
Q Consensus 238 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~ 270 (275)
.+++++|.+++. ++..+... +|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 181 SLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp EEECTTCCCCEE-CTTTTTTC-EEEEEEEESCC
T ss_pred hcccCCCCceec-CHHHhccC-cceeEeccccc
Confidence 777777777665 45445444 67777777764
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=160.33 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
.+++.+++++|.+.++.+ .+|+.|++++|++++..|..+.++++|++|++++|.++. +|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEe
Confidence 567888888888776643 367778888888888777788888888888888888875 6665 788888888
Q ss_pred CCCCCCCC-CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCC--CeeeccCCCC
Q 041140 163 LSRAEFTG-MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLL--KHLDLTGVDL 220 (275)
Q Consensus 163 L~~n~l~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L--~~L~L~~n~l 220 (275)
+++|.+++ .+|..++.+++|++|++++|.+.+. . +..+++| +.|++++|.+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G----GGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchh---h----ccccccceeeEEEeecccc
Confidence 88888876 4677888888888888888877541 1 5556666 8888888877
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=167.05 Aligned_cols=177 Identities=17% Similarity=0.082 Sum_probs=148.9
Q ss_pred EEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCc-chhhhCCccCCEEECCCCCCC
Q 041140 93 ELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQL-PVFLGSMGSLRHIDLSRAEFT 169 (275)
Q Consensus 93 ~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~~L~L~~n~l~ 169 (275)
.++.+++++...+. ..++.|++++|.+++..|..+.++++|++|++++|..... + |..+.++++|++|++++|.+.
T Consensus 8 ~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc
Confidence 34455555444333 5788999999999999999999999999999999976654 5 778999999999999999999
Q ss_pred CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+..|..++++++|++|++++|.+.+..+... .+.++++|++|++++|.+++.+. +..++.+++|++|++++|.+++.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTC--CCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCc--cccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCee
Confidence 8889999999999999999998876444321 17889999999999999998742 34688999999999999999987
Q ss_pred CCCcccCCC--CCcCEEecccCcCcee
Q 041140 250 LPELPIANF--SSLYTLDLSYNEFDNT 274 (275)
Q Consensus 250 ~~~~~l~~l--~~L~~L~L~~N~l~g~ 274 (275)
.+..+..+ ++|+.|++++|.+++.
T Consensus 164 -~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 164 -CEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp -CSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred -CHHHcccccCCccceEECCCCccccc
Confidence 66677776 8999999999998874
No 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.2e-18 Score=159.70 Aligned_cols=165 Identities=24% Similarity=0.226 Sum_probs=133.8
Q ss_pred CcEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 89 GHVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
.+++.|+++++.+..++. ..|+.|++++|.+.+..| +..+++|+.|+|++|.+++ +| .+..+++|++|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEec
Confidence 457777888887776544 367888888888887555 8889999999999999887 44 68889999999999
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|.+.+ + +.+..+++|+.|+|++|.+.+. .. +..+++|+.|+|++|.+++.++ +..+++|+.|+|++|
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKN 185 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSS
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCC
Confidence 999885 4 4588899999999999988754 22 7888999999999999988752 678899999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++++. + .+..+++|+.|+|++|.+++
T Consensus 186 ~i~~l--~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--G-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--h-HHccCCCCCEEEccCCcCcC
Confidence 99874 3 58889999999999998765
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=6.2e-18 Score=147.18 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
.++.+++++|.+.+... ..|+.+++++|.+.+..+ +..+++|++|++++|.++. ++. +..+++|++|++++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCS
T ss_pred CCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCCCEEECCC
Confidence 34444444444444332 134445555555544333 5566666666666666665 333 66666667777766
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|.+.+ + +.+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+++.+ +..+..+++|++|++++|+
T Consensus 253 n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 253 NQISD-I-NAVKDLTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp SCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGG--HHHHHTCTTCSEEECCSSS
T ss_pred CccCC-C-hhHhcCCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcC--hhHhhccccCCEEEccCCc
Confidence 66663 3 3466666777777777665543 1 1566777777777777776653 3456667777777777777
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+++. ++ +..+++|++|++++|.|+
T Consensus 323 l~~~-~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDI-RP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCC-GG--GGGCTTCSEESSSCC---
T ss_pred cccc-cC--hhhhhccceeehhhhccc
Confidence 7765 33 667777777777777765
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=9.3e-19 Score=150.96 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=136.0
Q ss_pred CcEEEEEcCCCCCCCCCc-cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140 89 GHVLELRLGNPFLHDDEP-FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE 167 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~-~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~ 167 (275)
..++.+++++|.+.++.. ..|+.|++++|.+++..+.. +++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus 80 ~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 80 STLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp TTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSC
T ss_pred CCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCC
Confidence 456777777776555433 36777788888887665543 67899999999999985 56678889999999999999
Q ss_pred CCCCCcccc-cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140 168 FTGMIPYQL-GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL 246 (275)
Q Consensus 168 l~~~lp~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 246 (275)
+.+..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.+++.++ .+..+++|+.|++++|++
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCC
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCcchh---hhcccCcccEEECcCCcc
Confidence 997666666 4789999999999988754 22 4458999999999999998754 467789999999999999
Q ss_pred CCCCCCcccCCCCCcCEEecccCcCc
Q 041140 247 HNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 247 ~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
++. +..+..+++|++|++++|+++
T Consensus 227 ~~l--~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 227 VLI--EKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred cch--hhHhhcCCCCCEEEccCCCcc
Confidence 863 446889999999999999997
No 83
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.7e-18 Score=160.19 Aligned_cols=168 Identities=18% Similarity=0.139 Sum_probs=96.8
Q ss_pred ccCce-EecCCCCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhh
Q 041140 78 TWAGV-VCNDSTGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG 153 (275)
Q Consensus 78 ~w~gv-~c~~~~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 153 (275)
.|.++ .|.. ++++.|++++|.+.+++. .+|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~ 119 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LP 119 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CC
T ss_pred hhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hh
Confidence 46666 4542 356666666666554332 24555555555555 344 234555555555555544 333 32
Q ss_pred ------------------CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeec
Q 041140 154 ------------------SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDL 215 (275)
Q Consensus 154 ------------------~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L 215 (275)
.+++|++|++++|.+++ +|. .+++|++|++++|.+.+ .|. +. ++|+.|++
T Consensus 120 ~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-----l~--~~L~~L~L 187 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-----LP--ESLEALDV 187 (571)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CC--TTCCEEEC
T ss_pred cCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-----hh--CCCCEEEC
Confidence 34445555555555542 443 34555555555555443 221 22 67888888
Q ss_pred cCCCCCCCCchhhhhCCCCCC-------cEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 216 TGVDLSTASDWFLVTNMLPSL-------QVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 216 ~~n~l~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
++|.++..|. +.. +| +.|+|++|+++. +|..+..+++|+.|+|++|+|+|.
T Consensus 188 s~N~L~~lp~----~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 188 STNLLESLPA----VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSCCSSCCC----CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred cCCCCCchhh----HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 8888876653 222 55 889999998885 344666799999999999999874
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=6.7e-19 Score=151.86 Aligned_cols=165 Identities=19% Similarity=0.153 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
.++.|++++|.+.+... ..|+.|++++|.+++.. ..+.|++|++++|.+++ ++. ..+++|++|++++
T Consensus 59 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~--~~~--~~~~~L~~L~l~~ 129 (317)
T 3o53_A 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISR--VSC--SRGQGKKNIYLAN 129 (317)
T ss_dssp TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSE--EEE--CCCSSCEEEECCS
T ss_pred cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCC--cCc--cccCCCCEEECCC
Confidence 34455555544432111 23444555555544321 12455555555555554 222 2367788888888
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccc-cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWL-SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
|++++..+..++.+++|++|++++|.+.+..+.. + ..+++|++|++++|.+++.+. ...+++|++|++++|
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~----~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTLDLSSN 201 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEEECCSS
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccccc----ccccccCCEEECCCC
Confidence 8888666667888889999999998887654443 3 467899999999999888742 235889999999999
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++++. ++ .+..+++|++|++++|+|++
T Consensus 202 ~l~~l-~~-~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 202 KLAFM-GP-EFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp CCCEE-CG-GGGGGTTCSEEECTTSCCCE
T ss_pred cCCcc-hh-hhcccCcccEEECcCCcccc
Confidence 99875 55 48889999999999999874
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=7.7e-18 Score=152.63 Aligned_cols=164 Identities=22% Similarity=0.274 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
.++.+++++|.+.++.. ..|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 222 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNE 296 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCS
T ss_pred CCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCC
Confidence 45555555555544322 245556666666655433 5566666666666666665 333 56666666666666
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|++.+. +. ++.+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.+ .+..+++|+.|++++|+
T Consensus 297 n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 297 NQLEDI-SP-ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDVS----SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSC
T ss_pred CcccCc-hh-hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCch----hhccCCCCCEEeCCCCc
Confidence 666643 22 5666667777777666654332 456677777777777777663 45667777777777777
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++. +| +..+++|++|++++|.+++
T Consensus 365 l~~~-~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 365 ISDL-TP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCBC-GG--GTTCTTCCEEECCCEEEEC
T ss_pred cCcc-ch--hhcCCCCCEEeccCCcccC
Confidence 7765 44 6777777888887777765
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1.5e-17 Score=141.73 Aligned_cols=147 Identities=20% Similarity=0.239 Sum_probs=127.9
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
.+++.+++++|.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ +| .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 3678899999998754 4 48889999999999999998 555 8999999999999999985 44 489999999999
Q ss_pred cccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140 187 LSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 266 (275)
Q Consensus 187 Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 266 (275)
+++|.+.+. + .+..+++|+.|++++|.+++.+ .+..+++|++|++++|++++. ++ +..+++|++|++
T Consensus 119 L~~n~i~~~-~-----~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~-~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEHNGISDI-N-----GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYL 185 (291)
T ss_dssp CTTSCCCCC-G-----GGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEEC
T ss_pred CCCCcCCCC-h-----hhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccc-hh--hcCCCccCEEEC
Confidence 999988753 2 2788999999999999999873 567889999999999999886 44 899999999999
Q ss_pred ccCcCce
Q 041140 267 SYNEFDN 273 (275)
Q Consensus 267 ~~N~l~g 273 (275)
++|.+++
T Consensus 186 ~~N~i~~ 192 (291)
T 1h6t_A 186 SKNHISD 192 (291)
T ss_dssp CSSCCCB
T ss_pred CCCcCCC
Confidence 9999875
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=7.4e-18 Score=157.38 Aligned_cols=147 Identities=25% Similarity=0.229 Sum_probs=124.9
Q ss_pred cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY 197 (275)
Q Consensus 118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 197 (275)
+++ .+|+.+ -+.+++|+|++|.|+.. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+.+..+
T Consensus 42 ~l~-~vP~~l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFY-KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCS-SCCSSS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcC-ccCCCC--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 443 456544 25789999999999984 45689999999999999999996556689999999999999999876554
Q ss_pred ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
.. +.++++|++|++++|.+++.++ ..++.+++|++|++++|.+++...+..++.+++|++|++++|+|++-
T Consensus 118 ~~----f~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 118 GA----FSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp GG----GTTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred HH----hcCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 44 8899999999999999999853 35789999999999999998754667889999999999999999863
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=1.6e-17 Score=144.65 Aligned_cols=167 Identities=23% Similarity=0.260 Sum_probs=121.5
Q ss_pred cEEEEEcCCCCCCCCCc----cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 90 HVLELRLGNPFLHDDEP----FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~----~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
.++.++++++.+.+... ..|+.+++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCS
T ss_pred CCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccC
Confidence 34455555554444332 245666667766654322 6667777777777777766 333 67788888888888
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|.+.+ ++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+ .+..+++|+.|++++|.
T Consensus 231 n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 231 NKITD-LSP-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp SCCCC-CGG-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSC
T ss_pred CccCC-Ccc-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCc
Confidence 88874 444 77888888888888877643 12778889999999999888874 45678899999999999
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+++. ++..+..+++|++|++++|++++.
T Consensus 299 l~~~-~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 299 LGNE-DMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CCGG-GHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCc-ChhHhhccccCCEEEccCCccccc
Confidence 9876 666788999999999999998763
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=8.6e-18 Score=147.53 Aligned_cols=153 Identities=24% Similarity=0.229 Sum_probs=127.8
Q ss_pred ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhh-CCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLG-SMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
+.+++++++++. +|..+. ..++.|++++|.++.. .+..+. .+++|++|++++|++++..+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 467788888864 776553 5689999999999984 445565 89999999999999997666789999999999999
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCccc---CCCCCcCEEe
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPI---ANFSSLYTLD 265 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~ 265 (275)
+|.+....+.. +..+++|+.|++++|.+++.+ +..+..+++|+.|+|++|++++. ++..+ ..+++|+.|+
T Consensus 97 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSCCCEECTTT----TTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEE
T ss_pred CCcCCcCCHHH----hCCCcCCCEEECCCCcccEEC--HHHhCCcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEE
Confidence 99987655544 789999999999999999874 34788899999999999999985 66555 6799999999
Q ss_pred cccCcCce
Q 041140 266 LSYNEFDN 273 (275)
Q Consensus 266 L~~N~l~g 273 (275)
|++|+|++
T Consensus 170 L~~N~l~~ 177 (361)
T 2xot_A 170 LSSNKLKK 177 (361)
T ss_dssp CCSSCCCC
T ss_pred CCCCCCCc
Confidence 99999975
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-17 Score=140.28 Aligned_cols=144 Identities=19% Similarity=0.254 Sum_probs=98.1
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
|+.|++++|+++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|++++ +|... . ++|++|+++
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 3334444445542 34 46677778888888887777 444 7777788888888887774 44432 2 778888888
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEeccc
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSY 268 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 268 (275)
+|.+.+. + . +..+++|+.|++++|.+++.+ .+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 115 ~N~l~~~-~-~----l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 115 NNELRDT-D-S----LIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCSBS-G-G----GTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred CCccCCC-h-h----hcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCC
Confidence 8776543 1 2 677778888888888777763 455677788888888877764 3577777788888887
Q ss_pred CcCce
Q 041140 269 NEFDN 273 (275)
Q Consensus 269 N~l~g 273 (275)
|.+++
T Consensus 182 N~~~~ 186 (263)
T 1xeu_A 182 QKCVN 186 (263)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 77654
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=7.7e-18 Score=131.74 Aligned_cols=135 Identities=22% Similarity=0.208 Sum_probs=104.4
Q ss_pred CCCCCCEEECCCCCCC-CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCC
Q 041140 129 DLKHLVYLELSNNNFE-KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGL 207 (275)
Q Consensus 129 ~l~~L~~L~Ls~n~l~-~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l 207 (275)
..++|++|++++|.++ +. +|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+.. +..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML----AEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH----HHHC
T ss_pred CcccCCEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH----HhhC
Confidence 3477888888888887 33 777778888888888888888754 67788888888888888877654443 5568
Q ss_pred CCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEecccCcCc
Q 041140 208 SLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~N~l~ 272 (275)
++|++|++++|.+++.+. +..+..+++|++|++++|.+++. ++ ..+..+++|++|++++|.++
T Consensus 95 ~~L~~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCChh
Confidence 888888888888888652 34677888888888888888875 44 46788888888888888764
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=6.8e-17 Score=146.17 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=116.1
Q ss_pred CcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCC
Q 041140 89 GHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSR 165 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~ 165 (275)
.+++.+++++|.+.+++. ..|+.|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++|++++
T Consensus 64 ~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp TTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTT
T ss_pred CCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCC
Confidence 456677777776665532 2466677777777663 3 6677777777777777766 43 66777777777777
Q ss_pred CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCc
Q 041140 166 AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACS 245 (275)
Q Consensus 166 n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 245 (275)
|++++ ++ ++.+++|++|++++|...+.. . +..+++|+.|++++|.+++.+ +..+++|+.|++++|+
T Consensus 137 N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~----~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 137 NTLTE-ID--VSHNTQLTELDCHLNKKITKL--D----VTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTCSCCCCC--C----CTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSC
T ss_pred Cccce-ec--cccCCcCCEEECCCCCccccc--c----cccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCc
Confidence 77775 33 667777777777777443332 2 677888999999999988864 5678899999999999
Q ss_pred CCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 246 LHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+++. .++.+++|++|++++|++++
T Consensus 203 l~~~----~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 203 ITKL----DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred CCee----ccccCCCCCEEECcCCcccc
Confidence 9874 37888999999999999886
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=5.3e-17 Score=133.59 Aligned_cols=144 Identities=21% Similarity=0.196 Sum_probs=123.5
Q ss_pred cceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccc
Q 041140 118 KLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLY 197 (275)
Q Consensus 118 ~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~ 197 (275)
+++ .+|..+. ++|++|++++|.+++. .|..+..+++|++|++++|++....+..+..+++|++|++++|.+.+..+
T Consensus 30 ~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~ 105 (229)
T 3e6j_A 30 RHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105 (229)
T ss_dssp CCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence 553 5665443 8999999999999996 78889999999999999999985444567899999999999999886655
Q ss_pred ccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 198 LENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 198 ~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
.. +..+++|++|++++|.++..|. .+..+++|++|++++|++++. ++..+..+++|+.|++++|.+++
T Consensus 106 ~~----~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 106 AV----FDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TT----TTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCBCT
T ss_pred hH----hCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCccC
Confidence 44 7889999999999999997754 667889999999999999976 66789999999999999999875
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=8.5e-17 Score=145.52 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=112.7
Q ss_pred CCcEEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECC
Q 041140 88 TGHVLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLS 164 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~ 164 (275)
-.+++.+++++|.+.+++. ..|+.|++++|.+++ +| ++.+++|++|++++|.+++ ++ ++.+++|++|+++
T Consensus 84 l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~--l~--l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE--ID--VSHNTQLTELDCH 156 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC--CC--CTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce--ec--cccCCcCCEEECC
Confidence 3578899999998877643 357788899998887 44 7888899999999998887 43 6777888888888
Q ss_pred CCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 165 RAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 165 ~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|...+.+ .++.+++|++|++++|.+.+. + +..+++|+.|++++|.+++.+ ++.+++|+.|++++|
T Consensus 157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~------l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 157 LNKKITKL--DVTPQTQLTTLDCSFNKITEL-D------VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSN 222 (457)
T ss_dssp TCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C------CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSS
T ss_pred CCCccccc--ccccCCcCCEEECCCCcccee-c------cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCC
Confidence 88655555 366777788888877776542 1 455666666666666666652 455666666666666
Q ss_pred cCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 245 SLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 245 ~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
++++. + +..+++|++|++++|+++|
T Consensus 223 ~l~~i-p---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 223 KLTEI-D---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSCC-C---CTTCTTCSEEECCSSCCSC
T ss_pred ccccc-C---ccccCCCCEEEeeCCcCCC
Confidence 66652 2 5566666666666666654
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=6.1e-17 Score=146.70 Aligned_cols=130 Identities=25% Similarity=0.300 Sum_probs=81.1
Q ss_pred ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 206 (275)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ +..
T Consensus 239 l~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~------~~~ 307 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISN--LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP------ISN 307 (466)
T ss_dssp GGGCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG------GGG
T ss_pred hhcCCCCCEEECCCCcccc--chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh------hcC
Confidence 4445555555555555554 222 4555555555555555553 222 5556666666666665543222 556
Q ss_pred CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
+++|+.|++++|.+++.++ +..+++|+.|++++|++++. ..+..+++|+.|++++|+++|.
T Consensus 308 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECcCCcCCCchh----hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCcc
Confidence 7777777777777777642 45677888888888887764 2577888888888888888764
No 96
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.1e-17 Score=132.38 Aligned_cols=130 Identities=22% Similarity=0.245 Sum_probs=92.6
Q ss_pred ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
+.+++++|++ +.+|..+.. .+++|++++|.+++. .+. .+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4567777777 456665543 778888888888773 222 37778888888888888887667777788888888888
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+|.+.+..+.. +..+++|++|++++|.+++.+ +..+..+++|++|++++|.+.+.
T Consensus 87 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKM----FLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSS----STTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHH----hcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCc
Confidence 88776655544 667777788888877777763 23566777777777777777765
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=7.4e-18 Score=139.35 Aligned_cols=156 Identities=14% Similarity=0.091 Sum_probs=130.7
Q ss_pred cccccccCCCCcceeecCccccCCCCCCEEECCCCC-CCCCCcchhhhCCccCCEEECCC-CCCCCCCcccccCCCCCCe
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-FEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLGNLSNLQY 184 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~~l~~l~~L~~ 184 (275)
..++.|++++|++++..+..+.++++|++|++++|. ++.. .+..+..+++|++|++++ |++++..+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 478899999999998777789999999999999997 8874 445789999999999998 9999655567899999999
Q ss_pred EEcccCCCCCcccccccccccCCCCCC---eeeccCC-CCCCCCchhhhhCCCCCCc-EEeccCCcCCCCCCCcccCCCC
Q 041140 185 LDLSSQIPLSFLYLENLSWLSGLSLLK---HLDLTGV-DLSTASDWFLVTNMLPSLQ-VLKLSACSLHNSLPELPIANFS 259 (275)
Q Consensus 185 L~Ls~n~~~~~~~~~~l~~l~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~l~ 259 (275)
|++++|.+.+ .|. +..+++|+ +|++++| .+++.+. ..+..+++|+ +|++++|+++.. ++..+.. +
T Consensus 110 L~l~~n~l~~-lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~ 179 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-----LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-T 179 (239)
T ss_dssp EEEEEECCCS-CCC-----CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-C
T ss_pred EeCCCCCCcc-ccc-----cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCccc-CHhhcCC-C
Confidence 9999998875 332 56677777 9999999 8988752 3578899999 999999999853 6655555 8
Q ss_pred CcCEEecccCc-Cce
Q 041140 260 SLYTLDLSYNE-FDN 273 (275)
Q Consensus 260 ~L~~L~L~~N~-l~g 273 (275)
+|++|++++|+ +++
T Consensus 180 ~L~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTV 194 (239)
T ss_dssp EEEEEECTTCTTCCE
T ss_pred CCCEEEcCCCCCccc
Confidence 99999999995 764
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-17 Score=133.54 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=104.5
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.|+.|++++|.++ .++.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus 67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 4556666666554 334688999999999999999876 6778999999999999999999888899999999999999
Q ss_pred ccCC-CCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 188 SSQI-PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 188 s~n~-~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
++|. +.. .+ . +..+++|++|++++|.+++.+ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~~-~~-~----l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITD-IM-P----LKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCC-CG-G----GGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred cCCCCccc-cH-h----hcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence 9997 543 33 2 888999999999999999875 45678999999999999865
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.3e-16 Score=148.86 Aligned_cols=146 Identities=20% Similarity=0.257 Sum_probs=127.9
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++ +++ +..+++|++|+|++|.+.+ +| .+..+++|++|++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 57888999999875 44 58999999999999999998 554 8999999999999999984 44 7899999999999
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+. + .+..+++|+.|+|++|.+++.+ .+..+++|+.|+|++|.+++. ++ +..+++|+.|+|+
T Consensus 117 s~N~l~~l-~-----~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 117 EHNGISDI-N-----GLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TTSCCCCC-G-----GGGGCTTCSEEECCSSCCCCCG----GGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECC
T ss_pred cCCCCCCC-c-----cccCCCccCEEECCCCccCCch----hhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECc
Confidence 99988753 2 2788999999999999999873 577899999999999999986 44 8999999999999
Q ss_pred cCcCce
Q 041140 268 YNEFDN 273 (275)
Q Consensus 268 ~N~l~g 273 (275)
+|+|++
T Consensus 184 ~N~i~~ 189 (605)
T 1m9s_A 184 KNHISD 189 (605)
T ss_dssp SSCCCB
T ss_pred CCCCCC
Confidence 999876
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.3e-17 Score=127.78 Aligned_cols=130 Identities=22% Similarity=0.190 Sum_probs=89.2
Q ss_pred CCCCCEEECCCCCCC-CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCC
Q 041140 130 LKHLVYLELSNNNFE-KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLS 208 (275)
Q Consensus 130 l~~L~~L~Ls~n~l~-~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~ 208 (275)
.++|+.|++++|.++ +. +|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+..|.. +..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCT
T ss_pred CccCeEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH----hhhCC
Confidence 356777777777776 33 666667777777777777777643 56677777777777777776544433 55577
Q ss_pred CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC---cccCCCCCcCEEeccc
Q 041140 209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE---LPIANFSSLYTLDLSY 268 (275)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~L~~ 268 (275)
+|++|++++|.+++.+ .+..+..+++|++|++++|.+++. ++ ..+..+++|++||+++
T Consensus 89 ~L~~L~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence 7777777777777653 134566777788888888877765 44 4577777888887763
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=7.7e-17 Score=129.03 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=108.7
Q ss_pred EEEcCCCCCCCCCc---cccccccCCCCcceeecCc-cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCC
Q 041140 93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINP-SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEF 168 (275)
Q Consensus 93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l 168 (275)
.++++++.+..++. ..++.|++++|.+.+..+. .+..+++|++|++++|.+++. .|..+..+++|++|++++|++
T Consensus 12 ~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC
Confidence 45555555544332 3789999999999877665 488999999999999999996 688999999999999999999
Q ss_pred CCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140 169 TGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224 (275)
Q Consensus 169 ~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~ 224 (275)
++..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGS----FEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTS----STTCTTCCEEECTTCCBCCSG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHH----hhcCCCCCEEEeCCCCccCcC
Confidence 9877778999999999999999998776666 889999999999999999874
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.4e-18 Score=149.04 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=87.2
Q ss_pred CcEEEEEcCCCCCCCCCc-----cccccccCCCCcceee-cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEE
Q 041140 89 GHVLELRLGNPFLHDDEP-----FWLEDYKDETSKLIGK-INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHID 162 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~-----~~L~~l~l~~n~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~ 162 (275)
..++.++++++.+.+... ..|+.|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEE
Confidence 345556666555443221 3455666666665544 555555666666666666666544 555566666666666
Q ss_pred CCCC-CCCCC-CcccccCCCCCCeEEcccC-CCCCc-ccccccccccCCC-CCCeeeccCC--CCCCCCchhhhhCCCCC
Q 041140 163 LSRA-EFTGM-IPYQLGNLSNLQYLDLSSQ-IPLSF-LYLENLSWLSGLS-LLKHLDLTGV--DLSTASDWFLVTNMLPS 235 (275)
Q Consensus 163 L~~n-~l~~~-lp~~l~~l~~L~~L~Ls~n-~~~~~-~~~~~l~~l~~l~-~L~~L~L~~n--~l~~~~~~~~~~~~l~~ 235 (275)
+++| .+++. ++..+..+++|++|++++| .+.+. .+.. +..++ +|++|++++| .++... ++..+..+++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~l~~~L~~L~l~~~~~~~~~~~-l~~~~~~~~~ 223 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA----VAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPN 223 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH----HHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH----HHhcccCCCEEEeCCCcccCCHHH-HHHHHhhCCC
Confidence 6666 44432 4444555566666666665 44322 1111 34444 5555555555 222110 1223334455
Q ss_pred CcEEeccCCc-CCCCCCCcccCCCCCcCEEecccC
Q 041140 236 LQVLKLSACS-LHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 236 L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
|++|++++|. +++. .+..+..+++|++|++++|
T Consensus 224 L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 224 LVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTC
T ss_pred CCEEeCCCCCcCCHH-HHHHHhCCCCCCEeeCCCC
Confidence 5555555554 3333 2224444455555555554
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=127.42 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=80.9
Q ss_pred cccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140 111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 111 ~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n 190 (275)
.+++++|+++ .+|..+. ++|++|++++|.++. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4556666665 4555432 467777777777764 6666777777777777777777555556667777777777777
Q ss_pred CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 191 ~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
.+.+..+.. +..+++|++|++++|.++..+. ..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRT----FDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTT----TTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHH----hCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeec
Confidence 666554444 6666667777777776666542 245556666666666666654
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=7.1e-17 Score=135.62 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=123.0
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.+..++++.+.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++ +|. +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 3455667777887544 47889999999999999987 66 68899999999999999995 555 999999999999
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+..+ +.. ++|+.|++++|.+++.+ .+..+++|+.|++++|++++. + .+..+++|++|+++
T Consensus 93 ~~N~l~~l~~------~~~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~-~--~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 93 NRNRLKNLNG------IPS-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSI-V--MLGFLSKLEVLDLH 158 (263)
T ss_dssp CSSCCSCCTT------CCC-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBC-G--GGGGCTTCCEEECT
T ss_pred CCCccCCcCc------ccc-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCC-h--HHccCCCCCEEECC
Confidence 9998875432 333 89999999999999874 478899999999999999885 3 58899999999999
Q ss_pred cCcCce
Q 041140 268 YNEFDN 273 (275)
Q Consensus 268 ~N~l~g 273 (275)
+|++++
T Consensus 159 ~N~i~~ 164 (263)
T 1xeu_A 159 GNEITN 164 (263)
T ss_dssp TSCCCB
T ss_pred CCcCcc
Confidence 999976
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=7.3e-19 Score=155.53 Aligned_cols=185 Identities=19% Similarity=0.109 Sum_probs=125.0
Q ss_pred CcEEEEEcCCCCCCCC----------------CccccccccCCCCccee----ecCccccCCCCCCEEECCCCCCCCC--
Q 041140 89 GHVLELRLGNPFLHDD----------------EPFWLEDYKDETSKLIG----KINPSLLDLKHLVYLELSNNNFEKA-- 146 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l----------------~~~~L~~l~l~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~l~~~-- 146 (275)
..++.|+++++.+..+ ....|+.|++++|.+.+ .+|..+..+++|++|++++|.++..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 5677888887755432 11467778888888876 4676777788888888888887642
Q ss_pred -CcchhhhCC---------ccCCEEECCCCCCC-CCCc---ccccCCCCCCeEEcccCCCCCcccccccc-cccCCCCCC
Q 041140 147 -QLPVFLGSM---------GSLRHIDLSRAEFT-GMIP---YQLGNLSNLQYLDLSSQIPLSFLYLENLS-WLSGLSLLK 211 (275)
Q Consensus 147 -~~p~~~~~l---------~~L~~L~L~~n~l~-~~lp---~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~l~~L~ 211 (275)
.++..+..+ ++|++|++++|++. +.+| ..+..+++|++|++++|.+.........+ .+..+++|+
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~ 219 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc
Confidence 022233333 78888888888886 3444 35667788888888888765221000111 267788889
Q ss_pred eeeccCCCCCCC--CchhhhhCCCCCCcEEeccCCcCCCCC---CCccc--CCCCCcCEEecccCcCce
Q 041140 212 HLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSL---PELPI--ANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 212 ~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l--~~l~~L~~L~L~~N~l~g 273 (275)
.|++++|.++.. ..++..+..+++|++|+|++|.+++.. .+..+ +.+++|++|+|++|.+++
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 999988888532 123456777888999999999887641 12234 348889999999998876
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=3.7e-17 Score=127.83 Aligned_cols=135 Identities=24% Similarity=0.263 Sum_probs=113.6
Q ss_pred ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
.++.|++++|+++ +.+|..+..+++|++|++++|.++. + ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3444455555887 7889888999999999999999987 5 7788999999999999999987888888899999999
Q ss_pred cccCCCCCccc-ccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccCCcCCCC
Q 041140 187 LSSQIPLSFLY-LENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 187 Ls~n~~~~~~~-~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+++|.+.+... .. +..+++|++|++++|.+++.+.+. ..+..+++|++|++++|.+...
T Consensus 102 Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999876432 23 889999999999999999886321 3678899999999999988654
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.7e-19 Score=155.09 Aligned_cols=190 Identities=23% Similarity=0.239 Sum_probs=151.8
Q ss_pred CcccCceEecCCCCcEEEEEcCCCCCCCCC-----ccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch
Q 041140 76 CCTWAGVVCNDSTGHVLELRLGNPFLHDDE-----PFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV 150 (275)
Q Consensus 76 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~-----~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~ 150 (275)
|.+|.++.|+. ..++.++++++.+.... ...++.+++++|.+.+..+. +..+++|++|++++|.+++..+|.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH
Confidence 44688888753 45889999998765311 14678889999999887776 668999999999999987633778
Q ss_pred hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC-CCCCc-ccccccccccCCCCCCeeeccCC-CCCCCCchh
Q 041140 151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ-IPLSF-LYLENLSWLSGLSLLKHLDLTGV-DLSTASDWF 227 (275)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~~~~~-~~~~~l~~l~~l~~L~~L~L~~n-~l~~~~~~~ 227 (275)
.+..+++|++|++++|.+++..|..++.+++|++|++++| .+.+. .+.. +.++++|++|++++| .+++.. .+
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~-~~ 187 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKH-VQ 187 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHH-HH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHH-HH
Confidence 8899999999999999999888889999999999999999 56532 2222 678999999999999 887642 24
Q ss_pred hhhCCCC-CCcEEeccCC--cCCCCCCCcccCCCCCcCEEecccCc-Cce
Q 041140 228 LVTNMLP-SLQVLKLSAC--SLHNSLPELPIANFSSLYTLDLSYNE-FDN 273 (275)
Q Consensus 228 ~~~~~l~-~L~~L~L~~n--~l~~~~~~~~l~~l~~L~~L~L~~N~-l~g 273 (275)
..+..++ +|++|++++| .+++...+..+..+++|++|++++|. +++
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 4567788 9999999999 56533245567889999999999999 664
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=4e-16 Score=123.01 Aligned_cols=129 Identities=20% Similarity=0.215 Sum_probs=63.1
Q ss_pred cccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC
Q 041140 111 DYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 111 ~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n 190 (275)
.+++++++++ .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3444555543 233222 24555555555555543 3333455555555555555555333333455555555555555
Q ss_pred CCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 191 IPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 191 ~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
.+.+..+.. +..+++|++|++++|.+++.+. ..+..+++|++|++++|.+.+.
T Consensus 87 ~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGV----FDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHH----hhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeecc
Confidence 554333322 4445555555555555554432 2234455555555555555443
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=4.7e-16 Score=140.56 Aligned_cols=164 Identities=26% Similarity=0.269 Sum_probs=106.9
Q ss_pred CcEEEEEcCCCCCCCCCcc--ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 89 GHVLELRLGNPFLHDDEPF--WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~~--~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
..++.+++++|.+.++... .|+.|++++|++++ +| .++++++|++|++++|.+++ +|.. ..+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCC
Confidence 5678888888887775443 78888889988886 77 58888999999999998887 5543 347888888888
Q ss_pred CCCCCCcccccCCCCCCeEEcccCCCCCccccc---------------ccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140 167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLE---------------NLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231 (275)
Q Consensus 167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~---------------~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 231 (275)
++.+ +| .++.+++|++|++++|.+.+. |.. .++.+..+++|++|++++|.+++.+.
T Consensus 184 ~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------ 254 (454)
T 1jl5_A 184 QLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------ 254 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------
T ss_pred cCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------
Confidence 8875 66 577888888888888776542 110 01124445555555555555555432
Q ss_pred CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
..++|+.|++++|++++. +. ..++|++|++++|+++|
T Consensus 255 ~~~~L~~L~l~~N~l~~l-~~----~~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTDL-PE----LPQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSE
T ss_pred cccccCEEECCCCccccc-Cc----ccCcCCEEECcCCccCc
Confidence 124555555555555542 22 12456666666666655
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=8.8e-17 Score=150.30 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=44.7
Q ss_pred EEEEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhh---------------
Q 041140 91 VLELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFL--------------- 152 (275)
Q Consensus 91 v~~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~--------------- 152 (275)
++.++++++.+..++. .+|+.|++++|.++ .+|. .+++|++|++++|.++. +|..+
T Consensus 42 l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCEEECCSSCCSCCCSCCCTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC--CCCCCTTCCEEEECSCCCCC
T ss_pred CcEEEecCCCcCccChhhCCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc--CCCCCCCCCEEECcCCcCCC
Confidence 5555555555443322 24555555555554 2333 34445555555555443 33300
Q ss_pred --hCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCC
Q 041140 153 --GSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLS 194 (275)
Q Consensus 153 --~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~ 194 (275)
..+++|++|++++|+++ .+|.. +++|++|++++|.+.+
T Consensus 116 l~~~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 116 LPALPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC
T ss_pred CCCCCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC
Confidence 03344555555555554 24432 3566666666665543
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2e-18 Score=152.75 Aligned_cols=182 Identities=19% Similarity=0.170 Sum_probs=143.0
Q ss_pred CCcEEEEEcCCCCCCCCC----------ccccccccCCCCcceeecCccc----cCC---------CCCCEEECCCCCCC
Q 041140 88 TGHVLELRLGNPFLHDDE----------PFWLEDYKDETSKLIGKINPSL----LDL---------KHLVYLELSNNNFE 144 (275)
Q Consensus 88 ~~~v~~l~l~~~~~~~l~----------~~~L~~l~l~~n~l~~~lp~~l----~~l---------~~L~~L~Ls~n~l~ 144 (275)
..+++.|++++|.+.+.. ...|+.|++++|.+++..+..+ ..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 367999999999988731 1478999999999975544433 334 89999999999998
Q ss_pred CCCcc---hhhhCCccCCEEECCCCCCCC-----CCcccccCCCCCCeEEcccCCCC----CcccccccccccCCCCCCe
Q 041140 145 KAQLP---VFLGSMGSLRHIDLSRAEFTG-----MIPYQLGNLSNLQYLDLSSQIPL----SFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 145 ~~~~p---~~~~~l~~L~~L~L~~n~l~~-----~lp~~l~~l~~L~~L~Ls~n~~~----~~~~~~~l~~l~~l~~L~~ 212 (275)
...++ ..+..+++|++|++++|.+.. .+|..+..+++|++|++++|.+. ...+.. +..+++|++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~ 248 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRE 248 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCE
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCE
Confidence 43266 567789999999999999972 34447889999999999999875 223333 788999999
Q ss_pred eeccCCCCCCC--Cchhhhh--CCCCCCcEEeccCCcCCC----CCCCccc-CCCCCcCEEecccCcCcee
Q 041140 213 LDLTGVDLSTA--SDWFLVT--NMLPSLQVLKLSACSLHN----SLPELPI-ANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 213 L~L~~n~l~~~--~~~~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~l-~~l~~L~~L~L~~N~l~g~ 274 (275)
|++++|.+++. ..++..+ +.+++|++|+|++|.+++ .++. .+ .++++|++|++++|++++.
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSCTT
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCCcc
Confidence 99999999876 2234455 448999999999999988 3233 44 6789999999999999874
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=7.2e-17 Score=123.64 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=109.0
Q ss_pred ccccccCCCCcce-eecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEE
Q 041140 108 WLEDYKDETSKLI-GKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLD 186 (275)
Q Consensus 108 ~L~~l~l~~n~l~-~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~ 186 (275)
.++.+++++|+++ +.+|..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 4555666666998 7899988999999999999999988 5 7788999999999999999987898888899999999
Q ss_pred cccCCCCCcc-cccccccccCCCCCCeeeccCCCCCCCCchh-hhhCCCCCCcEEeccC
Q 041140 187 LSSQIPLSFL-YLENLSWLSGLSLLKHLDLTGVDLSTASDWF-LVTNMLPSLQVLKLSA 243 (275)
Q Consensus 187 Ls~n~~~~~~-~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~ 243 (275)
+++|.+.+.. +.. +..+++|++|++++|.+++.+.+. ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEP----LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGG----GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHH----HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999987632 233 889999999999999999886421 3577889999999863
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=1.5e-15 Score=137.30 Aligned_cols=159 Identities=22% Similarity=0.226 Sum_probs=120.3
Q ss_pred CcEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCC
Q 041140 89 GHVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRA 166 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n 166 (275)
.+++.+++++|.+.++.. ..|+.|++++|++++ +|.. .++|++|++++|.+++ +| .++++++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCC
Confidence 568888888888777543 368888888888875 3321 2689999999999987 77 5899999999999999
Q ss_pred CCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcC
Q 041140 167 EFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSL 246 (275)
Q Consensus 167 ~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 246 (275)
++++ +|..+ ++|++|++++|.+.+ .| . +.++++|++|++++|.+++.+.. .++|++|++++|.+
T Consensus 164 ~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~----~~~l~~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 164 SLKK-LPDLP---PSLEFIAAGNNQLEE-LP-E----LQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNIL 227 (454)
T ss_dssp CCSC-CCCCC---TTCCEEECCSSCCSS-CC-C----CTTCTTCCEEECCSSCCSSCCCC------CTTCCEEECCSSCC
T ss_pred cCcc-cCCCc---ccccEEECcCCcCCc-Cc-c----ccCCCCCCEEECCCCcCCcCCCC------cCcccEEECcCCcC
Confidence 9984 66543 589999999998875 33 3 78889999999999988886531 24677777777777
Q ss_pred CCCCCCcccCCCCCcCEEecccCcCce
Q 041140 247 HNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 247 ~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+. .| .++.+++|++|++++|++++
T Consensus 228 ~~--lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 228 EE--LP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SS--CC-CCTTCTTCCEEECCSSCCSS
T ss_pred Cc--cc-ccCCCCCCCEEECCCCcCCc
Confidence 63 23 36777777777777777664
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=7.3e-18 Score=147.99 Aligned_cols=180 Identities=19% Similarity=0.162 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCCCCCc-----------cccccccCCCCcceeecCcccc----CC-CCCCEEECCCCCCCCCCcchhhh
Q 041140 90 HVLELRLGNPFLHDDEP-----------FWLEDYKDETSKLIGKINPSLL----DL-KHLVYLELSNNNFEKAQLPVFLG 153 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~-----------~~L~~l~l~~n~l~~~lp~~l~----~l-~~L~~L~Ls~n~l~~~~~p~~~~ 153 (275)
+++.+++++|.+.+... ..|+.|++++|.+++..+..++ .+ ++|++|++++|.+++. .+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHH
Confidence 57777777776655322 4566677777777655554332 33 6777777777777664 333332
Q ss_pred ----C-CccCCEEECCCCCCCCCCc----ccccCCC-CCCeEEcccCCCCCcccccccccccCC-CCCCeeeccCCCCCC
Q 041140 154 ----S-MGSLRHIDLSRAEFTGMIP----YQLGNLS-NLQYLDLSSQIPLSFLYLENLSWLSGL-SLLKHLDLTGVDLST 222 (275)
Q Consensus 154 ----~-l~~L~~L~L~~n~l~~~lp----~~l~~l~-~L~~L~Ls~n~~~~~~~~~~l~~l~~l-~~L~~L~L~~n~l~~ 222 (275)
. .++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+......+... ++|++|++++|.+++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2 2467777777777764332 3334444 777777777766544333211123444 477777777777766
Q ss_pred CC--chhhhhCC-CCCCcEEeccCCcCCCCCCC----cccCCCCCcCEEecccCcC
Q 041140 223 AS--DWFLVTNM-LPSLQVLKLSACSLHNSLPE----LPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 223 ~~--~~~~~~~~-l~~L~~L~L~~n~l~~~~~~----~~l~~l~~L~~L~L~~N~l 271 (275)
.. .++..+.. .++|++|++++|.+++. .. ..+..+++|++|++++|.+
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcH-HHHHHHHHHhcCCCccEEEeccCCc
Confidence 31 12233333 34777777777777764 22 2345667777777777763
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.4e-16 Score=139.27 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=105.4
Q ss_pred cccCceEecCCC---------CcEEEEEcCCCCCCCCCc------cccccccCCCCcceeecCc-cccCCCCCCE-EECC
Q 041140 77 CTWAGVVCNDST---------GHVLELRLGNPFLHDDEP------FWLEDYKDETSKLIGKINP-SLLDLKHLVY-LELS 139 (275)
Q Consensus 77 c~w~gv~c~~~~---------~~v~~l~l~~~~~~~l~~------~~L~~l~l~~n~l~~~lp~-~l~~l~~L~~-L~Ls 139 (275)
|.+..|.|.... ..+++|+|++|.|..+.. .+|+.|++++|.+.+.+|. .|.+++.+++ +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 677888886421 235556666665543322 2455555555555554443 3445555443 3344
Q ss_pred CCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccC-CCCCcccccccccccCC-CCCCeeeccC
Q 041140 140 NNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQ-IPLSFLYLENLSWLSGL-SLLKHLDLTG 217 (275)
Q Consensus 140 ~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n-~~~~~~~~~~l~~l~~l-~~L~~L~L~~ 217 (275)
+|+++.. .|..+..+++|++|++++|++....+..+....++..+++.++ .+....+.. +..+ ..++.|++++
T Consensus 89 ~N~l~~l-~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 89 ANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS----FVGLSFESVILWLNK 163 (350)
T ss_dssp ETTCCEE-CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS----STTSBSSCEEEECCS
T ss_pred CCccccc-CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc----hhhcchhhhhhcccc
Confidence 4555553 3444555555555555555555332223334444445555432 222111111 3333 3578889999
Q ss_pred CCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCce
Q 041140 218 VDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 218 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
|.++..+. ......+|+.+++.+|+..+.+++..|..+++|++||+++|+|+.
T Consensus 164 N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 164 NGIQEIHN---SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp SCCCEECT---TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccCCCh---hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 98887643 333456788888875433344477778888899999999998863
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=9.7e-16 Score=122.73 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=102.1
Q ss_pred EEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCC
Q 041140 93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFT 169 (275)
Q Consensus 93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 169 (275)
.++++++.+..++. ..++.|++++|+++ .+|..+.++++|++|++++|.++.. .+..|..+++|++|++++|+++
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccC
Confidence 34555555444332 47888999999997 6788899999999999999999985 6667899999999999999999
Q ss_pred CCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC
Q 041140 170 GMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA 223 (275)
Q Consensus 170 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~ 223 (275)
+..|..+..+++|++|++++|.+....+.. +..+++|+.|++++|.+...
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCEECS
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCCeecC
Confidence 777778999999999999999887654444 77889999999999988765
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=2.4e-15 Score=118.50 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=103.2
Q ss_pred CcccCceEecCCCCcEEEEEcCCCCCCCCCccccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCC
Q 041140 76 CCTWAGVVCNDSTGHVLELRLGNPFLHDDEPFWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSM 155 (275)
Q Consensus 76 ~c~w~gv~c~~~~~~v~~l~l~~~~~~~l~~~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l 155 (275)
.|.|.++.|... +++.+. ......++.|++++|++.+..+..+..+++|++|++++|.++.. .+..+..+
T Consensus 6 ~C~~~~l~~~~~--~l~~~p-------~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 75 (177)
T 2o6r_A 6 SCSGTEIRCNSK--GLTSVP-------TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKL 75 (177)
T ss_dssp EEETTEEECCSS--CCSSCC-------TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTC
T ss_pred EeCCCEEEecCC--CCccCC-------CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCC
Confidence 467877777541 222111 11124677888888899876666788999999999999999874 44557899
Q ss_pred ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140 156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~ 224 (275)
++|++|++++|++++..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBCCCH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCeeccC
Confidence 99999999999999665566788999999999999887554433 677899999999999998874
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5.6e-18 Score=157.04 Aligned_cols=154 Identities=24% Similarity=0.159 Sum_probs=111.8
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCC-------------CCCCCcchhhhCC-------------------
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNN-------------FEKAQLPVFLGSM------------------- 155 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-------------l~~~~~p~~~~~l------------------- 155 (275)
+|+.|++++|++. .+|++++++++|+.|++++|. +.+. .|..++.+
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhhh
Confidence 5667777777775 677777777777777776553 2222 33222211
Q ss_pred -------------ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCC
Q 041140 156 -------------GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST 222 (275)
Q Consensus 156 -------------~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~ 222 (275)
..|++|++++|.+++ +|. ++.+++|++|++++|.+. ..|.. ++.+++|+.|++++|.+++
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC
T ss_pred hhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC
Confidence 146788888888884 676 888888888888888877 44554 7888888888888888888
Q ss_pred CCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCcee
Q 041140 223 ASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFDNT 274 (275)
Q Consensus 223 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~g~ 274 (275)
.| .++.+++|+.|+|++|++++...|..++.+++|+.|++++|+|++.
T Consensus 501 lp----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 501 VD----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CG----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred Cc----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 64 5677888888888888888762166788888888888888888764
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=2e-16 Score=124.69 Aligned_cols=137 Identities=18% Similarity=0.098 Sum_probs=108.1
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
.+.++++|+.|++++|.++. +|......++|++|++++|.+++ + ..++.+++|++|++++|.+.+..+.. +.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~----~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL----DQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH----HH
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcch----hh
Confidence 35678899999999999986 65533334499999999999985 3 67888999999999999887543332 47
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc---ccCCCCCcCEEecccCcCc
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL---PIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~L~~N~l~ 272 (275)
.+++|++|++++|.++..+. ...+..+++|+.|++++|.++.. +.. .+..+++|+.||+++|.+.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 88999999999999977653 23677889999999999999864 442 4788999999999998753
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.9e-17 Score=145.33 Aligned_cols=184 Identities=18% Similarity=0.119 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCCCCCCc----------c-ccccccCCCCcceeecCccccCC-----CCCCEEECCCCCCCCCCcchhh
Q 041140 89 GHVLELRLGNPFLHDDEP----------F-WLEDYKDETSKLIGKINPSLLDL-----KHLVYLELSNNNFEKAQLPVFL 152 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~~----------~-~L~~l~l~~n~l~~~lp~~l~~l-----~~L~~L~Ls~n~l~~~~~p~~~ 152 (275)
..++.|++++|.+.+... . .|+.|++++|.+++..+..+..+ ++|++|++++|.+++. .+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHHH
Confidence 459999999999887653 2 68999999999998777766664 9999999999999875 55544
Q ss_pred ----hCC-ccCCEEECCCCCCCCCCcccc----cC-CCCCCeEEcccCCCCCcccccccccccCCC-CCCeeeccCCCCC
Q 041140 153 ----GSM-GSLRHIDLSRAEFTGMIPYQL----GN-LSNLQYLDLSSQIPLSFLYLENLSWLSGLS-LLKHLDLTGVDLS 221 (275)
Q Consensus 153 ----~~l-~~L~~L~L~~n~l~~~lp~~l----~~-l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~-~L~~L~L~~n~l~ 221 (275)
..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.........+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 444 899999999999987655544 34 369999999999887544333222345555 9999999999998
Q ss_pred CCCc--hhhhhCCC-CCCcEEeccCCcCCCCC---CCcccCC-CCCcCEEecccCcCce
Q 041140 222 TASD--WFLVTNML-PSLQVLKLSACSLHNSL---PELPIAN-FSSLYTLDLSYNEFDN 273 (275)
Q Consensus 222 ~~~~--~~~~~~~l-~~L~~L~L~~n~l~~~~---~~~~l~~-l~~L~~L~L~~N~l~g 273 (275)
+... +...+... ++|++|+|++|.+++.. .+..+.. .++|++|++++|.+++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 7632 23345556 59999999999998741 1223444 4699999999999976
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=2.2e-15 Score=140.85 Aligned_cols=160 Identities=23% Similarity=0.173 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCCCCCCc--cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140 90 HVLELRLGNPFLHDDEP--FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE 167 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~~--~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~ 167 (275)
.++.|++++|.+..++. .+|+.|++++|.+++ +|. .+++|+.|++++|.++. +|.. +++|++|++++|+
T Consensus 82 ~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 82 ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp TCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCc
Confidence 45555555555444322 245555555555554 333 45666777777777666 5543 4789999999998
Q ss_pred CCCCCccccc---CC--------------CCCCeEEcccCCCCCccccccccccc--------------CCCCCCeeecc
Q 041140 168 FTGMIPYQLG---NL--------------SNLQYLDLSSQIPLSFLYLENLSWLS--------------GLSLLKHLDLT 216 (275)
Q Consensus 168 l~~~lp~~l~---~l--------------~~L~~L~Ls~n~~~~~~~~~~l~~l~--------------~l~~L~~L~L~ 216 (275)
+++ +|..+. .+ ++|++|++++|.+.+... . +..+. .+++|+.|+++
T Consensus 153 l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~-~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls 229 (622)
T 3g06_A 153 LAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-L-PSELYKLWAYNNRLTSLPALPSGLKELIVS 229 (622)
T ss_dssp CSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-C-CTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred CCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-c-cchhhEEECcCCcccccCCCCCCCCEEEcc
Confidence 884 443222 22 677777777776654211 1 00011 12456666666
Q ss_pred CCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 217 GVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 217 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
+|.+++.+ ..+++|+.|++++|+++.. +. .+++|++|++++|+|+
T Consensus 230 ~N~L~~lp------~~l~~L~~L~Ls~N~L~~l-p~----~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 230 GNRLTSLP------VLPSELKELMVSGNRLTSL-PM----LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp SSCCSCCC------CCCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCC
T ss_pred CCccCcCC------CCCCcCcEEECCCCCCCcC-Cc----ccccCcEEeCCCCCCC
Confidence 66666543 2345667777777766642 32 4566777777777765
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=1.5e-18 Score=139.63 Aligned_cols=151 Identities=26% Similarity=0.230 Sum_probs=126.4
Q ss_pred ccccccCCCCcceeecCc------cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCC
Q 041140 108 WLEDYKDETSKLIGKINP------SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN 181 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~------~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~ 181 (275)
.++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 345556666788888776 88999999999999999998 77 8899999999999999998 78888888899
Q ss_pred CCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc--------
Q 041140 182 LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL-------- 253 (275)
Q Consensus 182 L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------- 253 (275)
|++|++++|.+.+. + . +..+++|++|++++|.+++.+. ...+..+++|++|++++|.+++. ++.
T Consensus 95 L~~L~L~~N~l~~l-~-~----~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~ 166 (198)
T 1ds9_A 95 LEELWISYNQIASL-S-G----IEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYND-YKENNATSEYR 166 (198)
T ss_dssp CSEEEEEEEECCCH-H-H----HHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHH
T ss_pred CCEEECcCCcCCcC-C-c----cccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccc-cccccchHHHH
Confidence 99999999988753 2 2 7889999999999999998753 34688899999999999999776 332
Q ss_pred --ccCCCCCcCEEecccCcCc
Q 041140 254 --PIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 254 --~l~~l~~L~~L~L~~N~l~ 272 (275)
.+..+++|++|| +|.++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 378899999997 66654
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=7e-15 Score=136.01 Aligned_cols=134 Identities=23% Similarity=0.298 Sum_probs=104.4
Q ss_pred ccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEc
Q 041140 108 WLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDL 187 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~L 187 (275)
.++.|++++|++++ +|..+ +++|++|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67889999999987 88766 3899999999999996 77 568999999999999996 887 655 8999999
Q ss_pred ccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecc
Q 041140 188 SSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLS 267 (275)
Q Consensus 188 s~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 267 (275)
++|.+.+. |. .+++|+.|++++|.+++.+. .+++|++|++++|++++. +. +. ++|++|+++
T Consensus 128 s~N~l~~l-p~-------~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~l-p~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 128 DNNQLTML-PE-------LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFL-PE--LP--ESLEALDVS 188 (571)
T ss_dssp CSSCCSCC-CC-------CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCC-CC--CC--TTCCEEECC
T ss_pred CCCcCCCC-CC-------cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCCc-ch--hh--CCCCEEECc
Confidence 99988752 22 45677888888888777652 356777777777777763 33 44 677777777
Q ss_pred cCcCc
Q 041140 268 YNEFD 272 (275)
Q Consensus 268 ~N~l~ 272 (275)
+|.|+
T Consensus 189 ~N~L~ 193 (571)
T 3cvr_A 189 TNLLE 193 (571)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 77765
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=3.3e-15 Score=142.30 Aligned_cols=154 Identities=18% Similarity=0.046 Sum_probs=98.8
Q ss_pred cccccccCCCCcceeecCccccCCCCCCE-----EECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCC
Q 041140 107 FWLEDYKDETSKLIGKINPSLLDLKHLVY-----LELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSN 181 (275)
Q Consensus 107 ~~L~~l~l~~n~l~~~lp~~l~~l~~L~~-----L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~ 181 (275)
..++.+++..|++.. .+..+.....|.. ++++.|.+.. .|..+..+++|++|+|++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 346667777777765 3433322222222 2333344442 5778899999999999999998 89998889999
Q ss_pred CCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCc
Q 041140 182 LQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSL 261 (275)
Q Consensus 182 L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 261 (275)
|++|+|++|.+. ..|.. +.++++|+.|+|++|.++..|. .++.+++|++|+|++|.++. +|..|+.+++|
T Consensus 249 L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L 318 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNL 318 (727)
T ss_dssp CSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCC--CCSSTTSCTTC
T ss_pred CCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCc--cChhhhcCCCc
Confidence 999999999987 55655 8999999999999999996654 67889999999999999974 34469999999
Q ss_pred CEEecccCcCcee
Q 041140 262 YTLDLSYNEFDNT 274 (275)
Q Consensus 262 ~~L~L~~N~l~g~ 274 (275)
++|+|++|.|+|.
T Consensus 319 ~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 319 QFLGVEGNPLEKQ 331 (727)
T ss_dssp CCEECTTSCCCSH
T ss_pred cEEeCCCCccCCC
Confidence 9999999999874
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=9.4e-15 Score=135.39 Aligned_cols=123 Identities=21% Similarity=0.231 Sum_probs=107.2
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~ 211 (275)
.|+.|++++|.+++ +|. ++.+++|++|++++|.++ .+|..++.+++|++|++++|.+++ .| . ++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCc
Confidence 58999999999998 776 999999999999999999 899999999999999999999986 34 3 89999999
Q ss_pred eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCc---ccCCCCCcCEEec
Q 041140 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPEL---PIANFSSLYTLDL 266 (275)
Q Consensus 212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~L 266 (275)
.|++++|.+++.+ .+..++.+++|+.|++++|.+++. ++. .+..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSS-TTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCC-CcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence 9999999999983 134788899999999999999986 442 2344899999975
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=1.9e-16 Score=142.77 Aligned_cols=143 Identities=22% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCCCEEECCCCCCCCCC---cchhhhCCccCCEEECCCCCCCCCCccccc-----CCCCCCeEEcccCCCCCccccccc
Q 041140 130 LKHLVYLELSNNNFEKAQ---LPVFLGSMGSLRHIDLSRAEFTGMIPYQLG-----NLSNLQYLDLSSQIPLSFLYLENL 201 (275)
Q Consensus 130 l~~L~~L~Ls~n~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~-----~l~~L~~L~Ls~n~~~~~~~~~~l 201 (275)
+++|++|++++|.++... ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+.......
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 455555555555554311 234444455555555555555432222221 124556666665554432211111
Q ss_pred ccccCCCCCCeeeccCCCCCCCC--chhhhhCC-CCCCcEEeccCCcCCC----CCCCcccCCCCCcCEEecccCcCce
Q 041140 202 SWLSGLSLLKHLDLTGVDLSTAS--DWFLVTNM-LPSLQVLKLSACSLHN----SLPELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 202 ~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
..+..+++|++|++++|.+++.. .+...+.. .++|++|++++|.+++ . .+..+..+++|++|++++|++++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~-l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS-LAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH-HHHHHHhCCCccEEECCCCCCCH
Confidence 22456678888888888776541 11222332 5688888888888875 3 34466778888888888888865
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=5.7e-14 Score=110.06 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=84.7
Q ss_pred CCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCe
Q 041140 133 LVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKH 212 (275)
Q Consensus 133 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~ 212 (275)
.+.+++++|.++. +|..+ .++|++|++++|++++..|..+..+++|++|++++|.+.+..+.. +..+++|++
T Consensus 11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCE
T ss_pred CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh----ccCCCCCCE
Confidence 4788899988887 67655 378888999999988776778888888899999888887655444 678888888
Q ss_pred eeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 213 LDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 213 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
|++++|.+++.+. ..+..+++|++|+|++|.+...
T Consensus 83 L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCBCTT
T ss_pred EECCCCccCEeCH--HHhcCCCCCCEEEeCCCCCCCC
Confidence 8888888888752 3567788888888888888765
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=2.3e-16 Score=142.29 Aligned_cols=184 Identities=20% Similarity=0.127 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCCCCCC----------ccccccccCCCCcceeecCcccc-CCC----CCCEEECCCCCCCCC---Ccchh
Q 041140 90 HVLELRLGNPFLHDDE----------PFWLEDYKDETSKLIGKINPSLL-DLK----HLVYLELSNNNFEKA---QLPVF 151 (275)
Q Consensus 90 ~v~~l~l~~~~~~~l~----------~~~L~~l~l~~n~l~~~lp~~l~-~l~----~L~~L~Ls~n~l~~~---~~p~~ 151 (275)
+++.+++++|.+.+.. ...|+.|++++|.+.+..+..+. .++ +|++|++++|.++.. .++..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 4555666666554210 03455666666666543333222 233 466666666666531 14555
Q ss_pred hhCCccCCEEECCCCCCCCCCcccc-----cCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCc-
Q 041140 152 LGSMGSLRHIDLSRAEFTGMIPYQL-----GNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD- 225 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~lp~~l-----~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~- 225 (275)
+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+.+.........+..+++|++|++++|.++....
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 6666666666666666553322222 1244566666666655433211111224556777777777777655411
Q ss_pred -hhhhhC-CCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcCce
Q 041140 226 -WFLVTN-MLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 226 -~~~~~~-~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~g 273 (275)
+...+. ..++|++|++++|.+++.. .+..+..+++|++|++++|.+++
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 111111 3457888888888777631 23456677888888888888764
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.5e-13 Score=108.15 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=86.7
Q ss_pred CEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCee
Q 041140 134 VYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHL 213 (275)
Q Consensus 134 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L 213 (275)
+.+++++|.++. +|..+. ++|++|++++|++.+..|..+..+++|++|++++|.+.+..+.. +.++++|++|
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEE
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH----hCCcchhhEE
Confidence 688999999876 777653 78999999999999777888889999999999999887654443 6788899999
Q ss_pred eccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 214 DLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 214 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
++++|.+++.+. ..+..+++|++|++++|.+...
T Consensus 87 ~L~~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNHLKSIPR--GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSCCCCCCT--TTTTTCTTCSEEECCSSCBCTT
T ss_pred ECCCCccceeCH--HHhccccCCCEEEeCCCCcccc
Confidence 999999988753 3477888999999999988764
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.8e-13 Score=107.20 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=93.0
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
.+.+++++|+++. +|..+ .+.|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678889999875 77666 38999999999999996 67889999999999999999996555567899999999999
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~ 224 (275)
+|.+.+..+.. +..+++|++|++++|.++...
T Consensus 87 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGA----FDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTT----TTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHH----hcCCCCCCEEEeCCCCCCCCc
Confidence 99998765554 788999999999999998874
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.1e-14 Score=113.07 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=87.8
Q ss_pred ccCCCCcceeecCccccCCC-CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccc-ccCCCCCCeEEccc
Q 041140 112 YKDETSKLIGKINPSLLDLK-HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQ-LGNLSNLQYLDLSS 189 (275)
Q Consensus 112 l~l~~n~l~~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~-l~~l~~L~~L~Ls~ 189 (275)
|++++|+++. +|. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++ +|.. +..+++|++|++++
T Consensus 24 L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 24 LDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTN 97 (176)
T ss_dssp EECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCS
T ss_pred EEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCC
Confidence 3333346653 343 44444 88888888888876 4 567788888888888888884 4543 47888888888888
Q ss_pred CCCCCcccccccccccCCCCCCeeeccCCCCCCCCch-hhhhCCCCCCcEEeccCCcCC
Q 041140 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDW-FLVTNMLPSLQVLKLSACSLH 247 (275)
Q Consensus 190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~ 247 (275)
|.+... +. +..+..+++|+.|++++|.++..+.. ...+..+++|+.|+++.|.+.
T Consensus 98 N~i~~~-~~--~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 98 NSLVEL-GD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCCCCG-GG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CcCCcc-hh--hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 877543 22 11267788888888888888766531 113567788888888888664
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=3.5e-13 Score=105.95 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=91.6
Q ss_pred ccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140 110 EDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189 (275)
Q Consensus 110 ~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~ 189 (275)
+.+++++|++ +.+|..+. ++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4678888888 46787664 8999999999999996 678899999999999999999964444568999999999999
Q ss_pred CCCCCcccccccccccCCCCCCeeeccCCCCCCCCc
Q 041140 190 QIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASD 225 (275)
Q Consensus 190 n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~ 225 (275)
|.+.+..+.. +..+++|++|++++|.+...+.
T Consensus 91 N~l~~l~~~~----~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGA----FDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTT----TTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHH----hccccCCCEEEeCCCCcccccc
Confidence 9998655544 7889999999999999998753
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=2.1e-16 Score=126.99 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=108.4
Q ss_pred ccCCCCCCEEECCCCCCCCC-----CcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccc
Q 041140 127 LLDLKHLVYLELSNNNFEKA-----QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENL 201 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 201 (275)
+.....++.++++.+.+.+. .+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.. .|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~-- 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENL-- 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSH--
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccch--
Confidence 34455566666666666554 134489999999999999999995 77 88999999999999998873 3433
Q ss_pred ccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCC-cccCCCCCcCEEecccCcCce
Q 041140 202 SWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPE-LPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 202 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~N~l~g 273 (275)
+..+++|++|++++|.+++.+ .+..+++|++|++++|++++. +. ..+..+++|++|++++|++++
T Consensus 89 --~~~~~~L~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 89 --DAVADTLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp --HHHHHHCSEEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCH-HHHHHHTTTTTCSEEEECSCHHHH
T ss_pred --hhcCCcCCEEECcCCcCCcCC----ccccCCCCCEEECCCCcCCch-hHHHHHhcCCCCCEEEecCCcccc
Confidence 566789999999999999864 466788999999999999874 32 468899999999999999865
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=4.5e-13 Score=116.87 Aligned_cols=171 Identities=16% Similarity=0.084 Sum_probs=128.0
Q ss_pred EEEcCCCCCCCCCc---cccccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcch-hhhCCccCCE-EECCCCC
Q 041140 93 ELRLGNPFLHDDEP---FWLEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPV-FLGSMGSLRH-IDLSRAE 167 (275)
Q Consensus 93 ~l~l~~~~~~~l~~---~~L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~-L~L~~n~ 167 (275)
.++.+++++..++. .+++.|++++|+++...+..|.++++|++|++++|.+.+. +|. .|.+++++++ +.+.+|+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCc
Confidence 46677777766543 5789999999999865555789999999999999998765 554 5788888775 5667799
Q ss_pred CCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccC-CCCCCCCchhhhhCCC-CCCcEEeccCCc
Q 041140 168 FTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG-VDLSTASDWFLVTNML-PSLQVLKLSACS 245 (275)
Q Consensus 168 l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l-~~L~~L~L~~n~ 245 (275)
+....|..+..+++|++|++++|.+....+.. +....++..+++.+ +.+...+. ..+..+ ..++.|++++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVH----KIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCT----TCCBSSCEEEEEESCTTCCEECT--TSSTTSBSSCEEEECCSSC
T ss_pred ccccCchhhhhccccccccccccccccCCchh----hcccchhhhhhhccccccccccc--cchhhcchhhhhhcccccc
Confidence 98666778899999999999999887655444 45566788888865 45665542 233444 468999999999
Q ss_pred CCCCCCCcccCCCCCcCEEeccc-CcCc
Q 041140 246 LHNSLPELPIANFSSLYTLDLSY-NEFD 272 (275)
Q Consensus 246 l~~~~~~~~l~~l~~L~~L~L~~-N~l~ 272 (275)
++.. ++ ......+|+++++++ |.++
T Consensus 166 i~~i-~~-~~f~~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 166 IQEI-HN-SAFNGTQLDELNLSDNNNLE 191 (350)
T ss_dssp CCEE-CT-TSSTTEEEEEEECTTCTTCC
T ss_pred ccCC-Ch-hhccccchhHHhhccCCccc
Confidence 9864 55 344567899999986 5443
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.3e-15 Score=134.24 Aligned_cols=160 Identities=15% Similarity=0.028 Sum_probs=91.4
Q ss_pred CcEEEEEcCCCCCCCCC-----------ccccccccCCCCcceeecCccc-cCCCCCCEEECCCCCCCCCCcchhh----
Q 041140 89 GHVLELRLGNPFLHDDE-----------PFWLEDYKDETSKLIGKINPSL-LDLKHLVYLELSNNNFEKAQLPVFL---- 152 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~-----------~~~L~~l~l~~n~l~~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~p~~~---- 152 (275)
..++.+++++|.+.... ...|+.|++++|.++......+ ..+++|++|++++|.++.. -...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHH
Confidence 46888999988765411 1356667777777654333322 2345667777777776553 22222
Q ss_pred -hCCccCCEEECCCCCCCC----CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCC--c
Q 041140 153 -GSMGSLRHIDLSRAEFTG----MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS--D 225 (275)
Q Consensus 153 -~~l~~L~~L~L~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~--~ 225 (275)
...++|++|++++|.++. .++..+..+++|++|++++|.+.+.........+...++|+.|++++|.++... .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 134567777777777653 233344566677777777776543221111122455566777777777766531 2
Q ss_pred hhhhhCCCCCCcEEeccCCcCCCC
Q 041140 226 WFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 226 ~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
+...+...++|++|+|++|.+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 233444556677777777776543
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=8.5e-12 Score=108.39 Aligned_cols=106 Identities=21% Similarity=0.127 Sum_probs=88.0
Q ss_pred CEEECCCC-CCCCCCcchhhhCCccCCEEECCC-CCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCC
Q 041140 134 VYLELSNN-NFEKAQLPVFLGSMGSLRHIDLSR-AEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK 211 (275)
Q Consensus 134 ~~L~Ls~n-~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~ 211 (275)
..++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..|+.+++|++|+|++|.+.+..+.. +.++++|+
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCC
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH----hcCCcCCC
Confidence 35688887 8887 888 99999999999996 9999766678999999999999999988776655 88899999
Q ss_pred eeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCC
Q 041140 212 HLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNS 249 (275)
Q Consensus 212 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 249 (275)
.|+|++|++++.+. ..+..++ |+.|+|.+|.+...
T Consensus 84 ~L~l~~N~l~~~~~--~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 84 RLNLSFNALESLSW--KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp EEECCSSCCSCCCS--TTTCSCC-CCEEECCSSCCCCC
T ss_pred EEeCCCCccceeCH--HHcccCC-ceEEEeeCCCccCC
Confidence 99999999998863 2344444 99999999988754
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.5e-11 Score=106.92 Aligned_cols=106 Identities=22% Similarity=0.267 Sum_probs=90.2
Q ss_pred cccCCCC-cceeecCccccCCCCCCEEECCC-CCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 111 DYKDETS-KLIGKINPSLLDLKHLVYLELSN-NNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 111 ~l~l~~n-~l~~~lp~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
.++++++ +++. +|. +..+++|++|+|++ |.+++. .+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4567777 7764 888 99999999999996 999985 55789999999999999999998888889999999999999
Q ss_pred cCCCCCcccccccccccCCCCCCeeeccCCCCCCCC
Q 041140 189 SQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTAS 224 (275)
Q Consensus 189 ~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~ 224 (275)
+|.+.+..+.. +..++ |+.|++.+|.+....
T Consensus 89 ~N~l~~~~~~~----~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKT----VQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTT----TCSCC-CCEEECCSSCCCCCG
T ss_pred CCccceeCHHH----cccCC-ceEEEeeCCCccCCC
Confidence 99998654433 44454 999999999999774
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=6.6e-14 Score=123.24 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=108.0
Q ss_pred ccccccCCCCcceeecCcccc-----CCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccc-----c
Q 041140 108 WLEDYKDETSKLIGKINPSLL-----DLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQL-----G 177 (275)
Q Consensus 108 ~L~~l~l~~n~l~~~lp~~l~-----~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l-----~ 177 (275)
.++.+++++|.++......+. ..++|++|++++|.++...+......+++|++|++++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 567788888887754333322 236888888888888654222233345678888888888874333333 3
Q ss_pred CCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--CchhhhhCCCCCCcEEeccCCcCCCCC---CC
Q 041140 178 NLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--SDWFLVTNMLPSLQVLKLSACSLHNSL---PE 252 (275)
Q Consensus 178 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~ 252 (275)
..++|++|++++|.+...........+...++|++|++++|.++.. ..+...+...++|+.|+|++|.+++.. ..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4678888888888765322222112246678888888888887754 123445666778888888888887531 12
Q ss_pred cccCCCCCcCEEecccCcCce
Q 041140 253 LPIANFSSLYTLDLSYNEFDN 273 (275)
Q Consensus 253 ~~l~~l~~L~~L~L~~N~l~g 273 (275)
..+...++|++|+|++|.|++
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHhCCCCCEEeccCCCCCH
Confidence 234456788888888888864
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=2.3e-12 Score=119.64 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=59.0
Q ss_pred EEEEEcCCCC-CCC--C-----CccccccccCCCCcceee----cCccccCCCCCCEEECCCCCCCCC---CcchhhhCC
Q 041140 91 VLELRLGNPF-LHD--D-----EPFWLEDYKDETSKLIGK----INPSLLDLKHLVYLELSNNNFEKA---QLPVFLGSM 155 (275)
Q Consensus 91 v~~l~l~~~~-~~~--l-----~~~~L~~l~l~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l 155 (275)
+++++++++. +.. + ....|+.|++++|.+++. ++..+..+++|++|++++|.+++. .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777664 111 1 113566777777776654 333445567777777777777621 144455667
Q ss_pred ccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140 156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~ 189 (275)
++|++|++++|.+.+ +|..+..+++|++|+++.
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 777777777777663 555556666666666653
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.16 E-value=6.3e-12 Score=116.66 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCCCCC-----c---cccccccCCCCc-cee-ecCccccCCCCCCEEECCCCCCCCCC---cchhhhCC
Q 041140 89 GHVLELRLGNPFLHDDE-----P---FWLEDYKDETSK-LIG-KINPSLLDLKHLVYLELSNNNFEKAQ---LPVFLGSM 155 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l~-----~---~~L~~l~l~~n~-l~~-~lp~~l~~l~~L~~L~Ls~n~l~~~~---~p~~~~~l 155 (275)
..+++|+++++.+.+.. . ..|+.|+++++. ++. .++.....+++|++|++++|.+++.. ++.....+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45777788777655421 1 137777777665 221 12222346778888888888776532 33345667
Q ss_pred ccCCEEECCCCCCCC----CCcccccCCCCCCeEEcccCCCC
Q 041140 156 GSLRHIDLSRAEFTG----MIPYQLGNLSNLQYLDLSSQIPL 193 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~----~lp~~l~~l~~L~~L~Ls~n~~~ 193 (275)
++|++|++++|.+++ .++..+..+++|++|++++|.+.
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 788888888888762 33444566788888888877654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=1.8e-10 Score=99.35 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=47.1
Q ss_pred CCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCc-EEeccCCcCCCCCCCcccCC
Q 041140 179 LSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQ-VLKLSACSLHNSLPELPIAN 257 (275)
Q Consensus 179 l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~l~~ 257 (275)
+++|+.+++++|.+....... |.++++|+.+++..| ++..+ ...+..+++|+ .+++.+ .++.. .+..|..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA-SVTAI-EFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT-TCCEE-CTTTTTT
T ss_pred cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc-cceEE-chhhhhC
Confidence 456666666665554333333 566666666666665 44432 23455566666 666655 44332 4455666
Q ss_pred CCCcCEEecccCcCc
Q 041140 258 FSSLYTLDLSYNEFD 272 (275)
Q Consensus 258 l~~L~~L~L~~N~l~ 272 (275)
|++|+.++++.|.++
T Consensus 296 c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 296 CDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTEEEEEECSSCCC
T ss_pred CccCCEEEeCCCccC
Confidence 666666666665543
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=1.4e-11 Score=114.33 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCCCCC-------CccccccccCCCC-cceee-cCccccCCCCCCEEECCCCCCCCCCcchhh----hCC
Q 041140 89 GHVLELRLGNPFLHDD-------EPFWLEDYKDETS-KLIGK-INPSLLDLKHLVYLELSNNNFEKAQLPVFL----GSM 155 (275)
Q Consensus 89 ~~v~~l~l~~~~~~~l-------~~~~L~~l~l~~n-~l~~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~----~~l 155 (275)
.++++++++++.+.+. ....|+.|++++| .++.. ++..+.++++|++|++++|.+++. .+..+ ..+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC-CGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc-chHHHHHHhhcC
Confidence 4577788877765542 1236677777777 34332 333344677888888888776654 23223 355
Q ss_pred ccCCEEECCCCC--CCCC-CcccccCCCCCCeEEcccC
Q 041140 156 GSLRHIDLSRAE--FTGM-IPYQLGNLSNLQYLDLSSQ 190 (275)
Q Consensus 156 ~~L~~L~L~~n~--l~~~-lp~~l~~l~~L~~L~Ls~n 190 (275)
++|++|++++|. +... ++..+..+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 678888888776 2111 1112244677888888776
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=2.4e-09 Score=92.33 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=84.9
Q ss_pred CccCCEEECCCCCCCCCCcc-cccCCCCCCeEEcccCCCCCcccccccccccCCCCCC-eeeccCCCCCCCCchhhhhCC
Q 041140 155 MGSLRHIDLSRAEFTGMIPY-QLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLK-HLDLTGVDLSTASDWFLVTNM 232 (275)
Q Consensus 155 l~~L~~L~L~~n~l~~~lp~-~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~~~ 232 (275)
+++|+++++++|.+. .+|. .|..+++|+.+++.+| +....... |.++++|+ .+++.. .++..+ ...+..
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~--~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIE--FGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEEC--TTTTTT
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEc--hhhhhC
Confidence 789999999999998 5554 7899999999999998 55444444 88999999 999988 666654 247888
Q ss_pred CCCCcEEeccCCcCCCCCCCcccCCCCCcCEEec
Q 041140 233 LPSLQVLKLSACSLHNSLPELPIANFSSLYTLDL 266 (275)
Q Consensus 233 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 266 (275)
+++|+.++++.|.++.. .+..|..+++|+.++.
T Consensus 296 c~~L~~l~l~~n~i~~I-~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTL-GDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTEEEEEECSSCCCEE-CTTTTCTTCCCCEEEC
T ss_pred CccCCEEEeCCCccCcc-chhhhcCCcchhhhcc
Confidence 99999999999999875 7778999999999874
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=8.6e-11 Score=108.94 Aligned_cols=155 Identities=17% Similarity=0.031 Sum_probs=89.4
Q ss_pred CcEEEEEcCCC-CCCC--C-----CccccccccCCCCcceeecCccc----cCCCCCCEEECCCCC--CCCCCcchhhhC
Q 041140 89 GHVLELRLGNP-FLHD--D-----EPFWLEDYKDETSKLIGKINPSL----LDLKHLVYLELSNNN--FEKAQLPVFLGS 154 (275)
Q Consensus 89 ~~v~~l~l~~~-~~~~--l-----~~~~L~~l~l~~n~l~~~lp~~l----~~l~~L~~L~Ls~n~--l~~~~~p~~~~~ 154 (275)
.+++.|+++++ .+.+ + ....|+.|++++|.+++..+..+ ..+++|++|++++|. ++...++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 46888888877 3332 1 12368888888888776544333 367799999999886 322113333456
Q ss_pred CccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC--------------------------CCcccccccccccCCC
Q 041140 155 MGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP--------------------------LSFLYLENLSWLSGLS 208 (275)
Q Consensus 155 l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~--------------------------~~~~~~~~l~~l~~l~ 208 (275)
+++|++|++++|...+.+|..+..+++|++|+++.+.. ...........+..++
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 78899999988832223566666667777776544311 0000000000122456
Q ss_pred CCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCC
Q 041140 209 LLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSAC 244 (275)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 244 (275)
+|++|++++|.+++.. ....+..+++|+.|++++|
T Consensus 290 ~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG
T ss_pred CCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc
Confidence 7777777777754432 2233455666666666665
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=5e-10 Score=97.94 Aligned_cols=147 Identities=17% Similarity=0.212 Sum_probs=96.2
Q ss_pred cCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCccccc--CCCCCCeEEccc--CCCCCcccc
Q 041140 123 INPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLG--NLSNLQYLDLSS--QIPLSFLYL 198 (275)
Q Consensus 123 lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~--~l~~L~~L~Ls~--n~~~~~~~~ 198 (275)
+...+..+++|+.|.+++|.-.. ++. + .+++|++|++..+.+.......+. .+++|++|+|+. |...+....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 44455678999999998873111 443 3 388999999998887643333443 789999999863 211111111
Q ss_pred cccc-cc--cCCCCCCeeeccCCCCCCCC-chhhhhCCCCCCcEEeccCCcCCCCC---CCcccCCCCCcCEEecccCcC
Q 041140 199 ENLS-WL--SGLSLLKHLDLTGVDLSTAS-DWFLVTNMLPSLQVLKLSACSLHNSL---PELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 199 ~~l~-~l--~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l 271 (275)
..+. .+ ..+++|++|++.+|.+.... ........+++|++|+|+.|.+.+.. ....+..+++|+.|++++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 0010 12 35789999999999887531 11112246789999999999987641 122345678999999999988
Q ss_pred ce
Q 041140 272 DN 273 (275)
Q Consensus 272 ~g 273 (275)
+.
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=2.7e-10 Score=90.29 Aligned_cols=124 Identities=12% Similarity=0.020 Sum_probs=63.3
Q ss_pred cCccccCCCCCCEEECCCC-CCCCC---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCC
Q 041140 123 INPSLLDLKHLVYLELSNN-NFEKA---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLS 194 (275)
Q Consensus 123 lp~~l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~ 194 (275)
+...+...+.|++|++++| .+... .+...+...++|++|+|++|.+... +...+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3444556677777777777 66542 1233444556667777776666532 22334444566666666665543
Q ss_pred cccccccccccCCCCCCeeec--cCCCCCCC--CchhhhhCCCCCCcEEeccCCcC
Q 041140 195 FLYLENLSWLSGLSLLKHLDL--TGVDLSTA--SDWFLVTNMLPSLQVLKLSACSL 246 (275)
Q Consensus 195 ~~~~~~l~~l~~l~~L~~L~L--~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l 246 (275)
.........+...++|++|++ ++|.+... ..+...+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 322111122444555666666 55555443 11223333445555555555554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=4.6e-10 Score=88.91 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=91.8
Q ss_pred cchhhhCCccCCEEECCCC-CCCCC----CcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCC
Q 041140 148 LPVFLGSMGSLRHIDLSRA-EFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLST 222 (275)
Q Consensus 148 ~p~~~~~l~~L~~L~L~~n-~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~ 222 (275)
+...+...++|++|++++| .+... +...+...++|++|++++|.+...........+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445667889999999999 87632 445667788999999999988654332222235566889999999999886
Q ss_pred C--CchhhhhCCCCCCcEEec--cCCcCCCCC---CCcccCCCCCcCEEecccCcCc
Q 041140 223 A--SDWFLVTNMLPSLQVLKL--SACSLHNSL---PELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 223 ~--~~~~~~~~~l~~L~~L~L--~~n~l~~~~---~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
. ..+...+...++|++|+| ++|.+++.. ....+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5 234556777889999999 889987641 1234556688999999999874
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=2.2e-09 Score=89.69 Aligned_cols=160 Identities=17% Similarity=0.123 Sum_probs=88.7
Q ss_pred CCcccCceEecCCCCcEEEEEcCCCC---C-CCCCccccc----cccCCCCcceeecCc-cccCCCCCCE--EECCCCCC
Q 041140 75 NCCTWAGVVCNDSTGHVLELRLGNPF---L-HDDEPFWLE----DYKDETSKLIGKINP-SLLDLKHLVY--LELSNNNF 143 (275)
Q Consensus 75 ~~c~w~gv~c~~~~~~v~~l~l~~~~---~-~~l~~~~L~----~l~l~~n~l~~~lp~-~l~~l~~L~~--L~Ls~n~l 143 (275)
..|.|.|+.|+....+|..+...+.. + +.+..-.++ .+...+|...+.++- .+...+.|.. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 46789999998655566555443321 0 111111111 122233333333332 1333333443 45555533
Q ss_pred CCCCcch----hhhCCccCCEEECCCCCCCC--CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccC
Q 041140 144 EKAQLPV----FLGSMGSLRHIDLSRAEFTG--MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTG 217 (275)
Q Consensus 144 ~~~~~p~----~~~~l~~L~~L~L~~n~l~~--~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~ 217 (275)
.. ++. ...++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+.+.... ..+..+ +|+.|++++
T Consensus 156 ~~--~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l---~~l~~l-~L~~L~L~~ 229 (267)
T 3rw6_A 156 SC--MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL---DKIKGL-KLEELWLDG 229 (267)
T ss_dssp HH--HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG---GGGTTS-CCSEEECTT
T ss_pred HH--HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh---hhcccC-CcceEEccC
Confidence 22 222 22457788888888888886 4455666788888888888887755221 123344 888888888
Q ss_pred CCCCCC-Cc----hhhhhCCCCCCcEEe
Q 041140 218 VDLSTA-SD----WFLVTNMLPSLQVLK 240 (275)
Q Consensus 218 n~l~~~-~~----~~~~~~~l~~L~~L~ 240 (275)
|.+.+. +. ....+..+|+|+.||
T Consensus 230 Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 230 NSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp STTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcCccccCcchhHHHHHHHHCcccCeEC
Confidence 888763 11 123456678888776
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=3.6e-07 Score=80.93 Aligned_cols=88 Identities=8% Similarity=-0.043 Sum_probs=48.1
Q ss_pred ccccCCCCCCeEEcccCCCC-----CcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCC
Q 041140 174 YQLGNLSNLQYLDLSSQIPL-----SFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHN 248 (275)
Q Consensus 174 ~~l~~l~~L~~L~Ls~n~~~-----~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 248 (275)
..+..+++|+.+++.+|... ...... +.++++|+.+++.. .++... ...+..+++|+.+.+..+ ++.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~-~i~~I~--~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPE-SIRILG--QGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCT-TCCEEC--TTTTTTCCSCCEEEECTT-CCE
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCC-ceEEEh--hhhhcCCCCccEEEECcc-ccE
Confidence 35566677777777665432 111112 56666666666663 344332 124555666777766443 332
Q ss_pred CCCCcccCCCCCcCEEecccCcC
Q 041140 249 SLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 249 ~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
. ....|..+ +|+.+++.+|.+
T Consensus 337 I-~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 337 I-NFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp E-CTTSSSSS-CCCEEEECCSSC
T ss_pred E-cHHhCCCC-CCCEEEEcCCCC
Confidence 2 44456666 677777766653
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=2.9e-08 Score=86.76 Aligned_cols=142 Identities=19% Similarity=0.151 Sum_probs=94.5
Q ss_pred CccccCCCCCCEEECCCCCCCC--------CCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCc
Q 041140 124 NPSLLDLKHLVYLELSNNNFEK--------AQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSF 195 (275)
Q Consensus 124 p~~l~~l~~L~~L~Ls~n~l~~--------~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~ 195 (275)
..++..+++|+.|.+..+.... ..+...+..+++|+.|.+++|.-. .++. +. +++|++|++..+.+...
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChH
Confidence 3446678899999887654321 115566788899999999987422 3444 43 89999999998866432
Q ss_pred ccccccccc--cCCCCCCeeeccC--CCCCCCC---chhhhh--CCCCCCcEEeccCCcCCCCCCCccc---CCCCCcCE
Q 041140 196 LYLENLSWL--SGLSLLKHLDLTG--VDLSTAS---DWFLVT--NMLPSLQVLKLSACSLHNSLPELPI---ANFSSLYT 263 (275)
Q Consensus 196 ~~~~~l~~l--~~l~~L~~L~L~~--n~l~~~~---~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~ 263 (275)
.... + ..+++|++|+|+. |...+.. .+...+ ..+|+|++|++.+|.+.+. .+..+ ..+++|++
T Consensus 209 ~l~~----l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 209 VVED----ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLET 283 (362)
T ss_dssp HHHH----HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSE
T ss_pred HHHH----HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCE
Confidence 2111 3 3789999999863 2222221 111122 3579999999999998754 22122 35789999
Q ss_pred EecccCcCce
Q 041140 264 LDLSYNEFDN 273 (275)
Q Consensus 264 L~L~~N~l~g 273 (275)
|+|+.|.+++
T Consensus 284 LdLs~n~L~d 293 (362)
T 2ra8_A 284 MDISAGVLTD 293 (362)
T ss_dssp EECCSSCCBH
T ss_pred EECCCCCCCh
Confidence 9999999875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=2e-06 Score=76.07 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=82.9
Q ss_pred cccccCCCCcceeecCccccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcc
Q 041140 109 LEDYKDETSKLIGKINPSLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLS 188 (275)
Q Consensus 109 L~~l~l~~n~l~~~lp~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls 188 (275)
|+.+.+.. .+...-+.+|.++++|+.+++..|.++. ++.......+|+.+.+..+ +...-...+.++++|+.+++.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 34444433 3333333456667777777777776665 3433333466666666533 332222355566666666665
Q ss_pred cCC---------------------CCCcccccccccccCCCCCCeeeccCCCCC-----CCCchhhhhCCCCCCcEEecc
Q 041140 189 SQI---------------------PLSFLYLENLSWLSGLSLLKHLDLTGVDLS-----TASDWFLVTNMLPSLQVLKLS 242 (275)
Q Consensus 189 ~n~---------------------~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~l~~L~~L~L~ 242 (275)
.+. +...... .+.++++|+.+++.+|.+. ..+ ...+..+++|+.+++.
T Consensus 235 ~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 235 ENVSTIGQEAFRESGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTCCEECTTTTTTCCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEECCC
T ss_pred CCccCccccccccCCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCccccCCcccEEC--HHHhhCCccCCeEEeC
Confidence 431 1111111 2666777777777776654 111 2356667778888777
Q ss_pred CCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 243 ACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 243 ~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
. .++.. ....|..|++|+.+++..|
T Consensus 309 ~-~i~~I-~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 309 E-SIRIL-GQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp T-TCCEE-CTTTTTTCCSCCEEEECTT
T ss_pred C-ceEEE-hhhhhcCCCCccEEEECcc
Confidence 3 34432 5557777888888887654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=4.7e-07 Score=75.53 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=71.6
Q ss_pred ccCCCCc---ceeecCccccCCCCCCEEECCCCCCCCC-CcchhhhCCccCCEEECCCCCCCCCCcccccCCC--CCCeE
Q 041140 112 YKDETSK---LIGKINPSLLDLKHLVYLELSNNNFEKA-QLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLS--NLQYL 185 (275)
Q Consensus 112 l~l~~n~---l~~~lp~~l~~l~~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~--~L~~L 185 (275)
++++.|. +.+.++....++++|+.|+|++|.+++. .+|..+..+++|++|+|++|++.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 5666664 2232332335689999999999999983 1556778999999999999999954 3344444 99999
Q ss_pred EcccCCCCCccccc---ccccccCCCCCCeee
Q 041140 186 DLSSQIPLSFLYLE---NLSWLSGLSLLKHLD 214 (275)
Q Consensus 186 ~Ls~n~~~~~~~~~---~l~~l~~l~~L~~L~ 214 (275)
++++|.+.+..+.. ....+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999887543311 111267788999886
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.1e-06 Score=68.48 Aligned_cols=35 Identities=6% Similarity=0.101 Sum_probs=18.6
Q ss_pred CCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCC
Q 041140 132 HLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAE 167 (275)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~ 167 (275)
.|+.||++++.++.. --..+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC
Confidence 456666666665553 22334455555555555553
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.6e-06 Score=67.49 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=64.3
Q ss_pred ccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCC-CCCcccccccccccCC----CCCCeeeccCCC-CCCCCchhhh
Q 041140 156 GSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI-PLSFLYLENLSWLSGL----SLLKHLDLTGVD-LSTASDWFLV 229 (275)
Q Consensus 156 ~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-~~~~~~~~~l~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~ 229 (275)
.+|++|+++++.++..--..+..+++|++|+|++|. +++..-.. +..+ ++|++|++++|. ++... ...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDKG--IIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHHH--HHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHHH--HHH
Confidence 469999999999886655677899999999999985 54332222 5554 479999999985 66542 335
Q ss_pred hCCCCCCcEEeccCCc-CCC
Q 041140 230 TNMLPSLQVLKLSACS-LHN 248 (275)
Q Consensus 230 ~~~l~~L~~L~L~~n~-l~~ 248 (275)
+..+++|++|++++|. +++
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 6678999999999884 554
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=7.3e-06 Score=64.96 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=45.4
Q ss_pred ccCCCCCCEEECCCC-CCCCC---CcchhhhCCccCCEEECCCCCCCCC----CcccccCCCCCCeEEcccCCCCCcccc
Q 041140 127 LLDLKHLVYLELSNN-NFEKA---QLPVFLGSMGSLRHIDLSRAEFTGM----IPYQLGNLSNLQYLDLSSQIPLSFLYL 198 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n-~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~----lp~~l~~l~~L~~L~Ls~n~~~~~~~~ 198 (275)
+.+-+.|++|+|++| .+... .+-..+..-+.|++|+|++|.+... +.+.+..-+.|++|+|++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566677777664 55431 1223344455666666666666521 223333445566666666655433222
Q ss_pred cccccccCCCCCCeeeccCC
Q 041140 199 ENLSWLSGLSLLKHLDLTGV 218 (275)
Q Consensus 199 ~~l~~l~~l~~L~~L~L~~n 218 (275)
.....+..-+.|+.|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 22222334445555555543
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=1.3e-05 Score=63.46 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=75.4
Q ss_pred hhCCccCCEEECCCC-CCCC----CCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCC--C
Q 041140 152 LGSMGSLRHIDLSRA-EFTG----MIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTA--S 224 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n-~l~~----~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~--~ 224 (275)
+.+-+.|++|+|++| .+.. .+-+.+..-+.|+.|+|++|.+...........+..-+.|++|+|+.|.|... .
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567888888875 6642 13345666778888888888776443333222345567788888888888754 3
Q ss_pred chhhhhCCCCCCcEEeccCC---cCCCC---CCCcccCCCCCcCEEecccCcC
Q 041140 225 DWFLVTNMLPSLQVLKLSAC---SLHNS---LPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 225 ~~~~~~~~l~~L~~L~L~~n---~l~~~---~~~~~l~~l~~L~~L~L~~N~l 271 (275)
.+...+..-+.|++|+|++| .+.+. .+...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34556666677888888754 33321 0123455557788888877753
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.36 E-value=0.00091 Score=58.61 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=79.7
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCc-ccccCCCCCCeEEcccCCCCCcccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIP-YQLGNLSNLQYLDLSSQIPLSFLYLENLSWL 204 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 204 (275)
+|.++..|+.+.+..+...- -...+.++.+|+.+.+. +.+. .++ ..+.++.+|+.+++..+ +....... +
T Consensus 260 aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a----F 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDA----F 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT----T
T ss_pred eeeecccccEEeccccccee--cCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhH----h
Confidence 56677888888886654322 33467778888888886 3444 333 46778888998888765 33233333 7
Q ss_pred cCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcCc
Q 041140 205 SGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEFD 272 (275)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l~ 272 (275)
.++.+|+.+.+..+ ++... ...+..+++|+.+++.++.... ..+..+.+|+.+.+..|.++
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~--~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIP--ESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCC--GGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC-----------
T ss_pred hCCCCCCEEEECcc-cCEEh--HhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCEE
Confidence 78888888888644 55543 2367788889988888765432 24667778888888777654
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0011 Score=48.74 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=20.3
Q ss_pred CCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCcC
Q 041140 235 SLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNEF 271 (275)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~l 271 (275)
+|++|+|++|+|+.. ++..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence 455556666655543 444555555566666666554
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.04 E-value=0.0038 Score=54.60 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=75.7
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCccccccccccc
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLS 205 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 205 (275)
.+.++..++.+.+..+...- ....+..+..++.+....+.+. ...+..+.+|+.+.+..+ +....... +.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a----F~ 317 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA----FE 317 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT----TT
T ss_pred cccccccceeEEcCCCccee--eccccccccccceeccCceeec---cccccccccccccccccc-cceechhh----hc
Confidence 45556667777666554322 2334555666666655543321 124566777777777654 32222222 67
Q ss_pred CCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 206 GLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
++.+|+.+++..+ ++... ...+..+++|+.+.+..+ ++. +....|..|.+|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~--~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIG--KRSFRGCTSLSNINFPLS-LRK-IGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEEC--TTTTTTCTTCCEECCCTT-CCE-ECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEh--HHhccCCCCCCEEEECcc-ccE-ehHHHhhCCCCCCEEEECCC
Confidence 7778888877543 44332 135667778888888665 433 24557788888888877654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.0051 Score=53.33 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=70.5
Q ss_pred ccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccC
Q 041140 127 LLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSG 206 (275)
Q Consensus 127 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 206 (275)
+.....|+.+.+..+ +... -...+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +....... +.+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a----F~~ 284 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL----CSG 284 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTT----TTT
T ss_pred cccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccc----ccc
Confidence 344555666655443 2221 2234555666777666543 33122234556667777766543 22121222 566
Q ss_pred CCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 207 LSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
+.+|+.+.+..+.++.... ..+..+.+|+.+.+..+ ++. +....|.+|++|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECCc
Confidence 7777777777666655432 25566677777777543 322 23446777777777766543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0051 Score=45.09 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=26.8
Q ss_pred EEECCCCCCC--CCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCC
Q 041140 135 YLELSNNNFE--KAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIP 192 (275)
Q Consensus 135 ~L~Ls~n~l~--~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~ 192 (275)
.++.+++.++ . +|..+ -++|++|+|++|+|+..-+..+..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~--vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWAS--LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTT--SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCcccc--CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 3 44321 12455666666666522222345555566666665543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.46 E-value=0.013 Score=51.07 Aligned_cols=109 Identities=16% Similarity=0.171 Sum_probs=76.8
Q ss_pred hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhh
Q 041140 151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVT 230 (275)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 230 (275)
.|.++.+|+.+.+..+... .-...+.++++|+.+.+..+ +....... +.++.+|+.+++..+ ++... ...+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~a----F~~c~~L~~i~lp~~-v~~I~--~~aF 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESV----FAGCISLKSIDIPEG-ITQIL--DDAF 330 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEECCTT-CCEEC--TTTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCcee----ecCCCCcCEEEeCCc-ccEeh--HhHh
Confidence 4566778888888655433 23346778899999998754 33222333 788999999999754 44432 2367
Q ss_pred CCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccCc
Q 041140 231 NMLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYNE 270 (275)
Q Consensus 231 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N~ 270 (275)
..+.+|+.+.+..+ ++. +....|.+|++|+.+++.+|.
T Consensus 331 ~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCce
Confidence 78899999999654 443 356789999999999998874
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.08 E-value=0.018 Score=50.32 Aligned_cols=133 Identities=10% Similarity=0.047 Sum_probs=69.2
Q ss_pred cccCCCCCCEEECCCCCCCCCCcchhhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCC--------------
Q 041140 126 SLLDLKHLVYLELSNNNFEKAQLPVFLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQI-------------- 191 (275)
Q Consensus 126 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~-------------- 191 (275)
+|.++.+|+.+.+..+ ++.. -...|.++.+|+.+++..+ +...-...+..+.+|+.+.+..+.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 4555666666666432 4332 2234555666666666533 221112234445555544443321
Q ss_pred -------CCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhCCCCCCcEEeccCCcCCCCCCCcccCCCCCcCEE
Q 041140 192 -------PLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTNMLPSLQVLKLSACSLHNSLPELPIANFSSLYTL 264 (275)
Q Consensus 192 -------~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 264 (275)
...... ..+.++++|+.+.+..+. .... ...+..+++|+.+.+..+ +.. +....+..+..|+.+
T Consensus 143 ~~~~~~~~~~i~~----~aF~~c~~L~~i~l~~~~-~~I~--~~~F~~c~~L~~i~l~~~-~~~-I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 143 EITIPEGVTVIGD----EAFATCESLEYVSLPDSM-ETLH--NGLFSGCGKLKSIKLPRN-LKI-IRDYCFAECILLENM 213 (394)
T ss_dssp EEECCTTCCEECT----TTTTTCTTCCEEECCTTC-CEEC--TTTTTTCTTCCBCCCCTT-CCE-ECTTTTTTCTTCCBC
T ss_pred ccccCccccccch----hhhcccCCCcEEecCCcc-ceec--cccccCCCCceEEEcCCC-ceE-eCchhhcccccccee
Confidence 000011 126677888888876543 2221 125566778888888665 322 244567778888877
Q ss_pred ecccCc
Q 041140 265 DLSYNE 270 (275)
Q Consensus 265 ~L~~N~ 270 (275)
.+..+.
T Consensus 214 ~~~~~~ 219 (394)
T 4fs7_A 214 EFPNSL 219 (394)
T ss_dssp CCCTTC
T ss_pred ecCCCc
Confidence 776553
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.73 E-value=0.092 Score=45.26 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=71.1
Q ss_pred hhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEcccCCCCCcccccccccccCCCCCCeeeccCCCCCCCCchhhhhC
Q 041140 152 LGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSSQIPLSFLYLENLSWLSGLSLLKHLDLTGVDLSTASDWFLVTN 231 (275)
Q Consensus 152 ~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 231 (275)
+....+|+.+.+..+ +...-...+..+..|+.+.+..+ +....... +.++.+|+.+.+..+ ++..+ ...+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a----F~~~~~l~~i~l~~~-i~~i~--~~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL----LQNCTALKTLNFYAK-VKTVP--YLLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT----TTTCTTCCEEEECCC-CSEEC--TTTTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc----cceeehhcccccccc-ceecc--ccccc
Confidence 344556666666543 22122335667788888888765 32222222 677888888888643 33332 23567
Q ss_pred CCCCCcEEeccCCcCCCCCCCcccCCCCCcCEEecccC
Q 041140 232 MLPSLQVLKLSACSLHNSLPELPIANFSSLYTLDLSYN 269 (275)
Q Consensus 232 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~N 269 (275)
.+++|+.+.+.++.++.. ....|..|.+|+.+++..+
T Consensus 284 ~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccccccee-hhhhhcCCCCCCEEEcCcc
Confidence 889999999988877654 5668999999999999765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.44 E-value=1e+02 Score=20.64 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=15.4
Q ss_pred hhhCCccCCEEECCCCCCCCCCcccccCCCCCCeEEccc
Q 041140 151 FLGSMGSLRHIDLSRAEFTGMIPYQLGNLSNLQYLDLSS 189 (275)
Q Consensus 151 ~~~~l~~L~~L~L~~n~l~~~lp~~l~~l~~L~~L~Ls~ 189 (275)
.|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444445555444432 1211122344444444444443
Done!