BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041141
(575 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 331/567 (58%), Positives = 403/567 (71%), Gaps = 18/567 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESPTFC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLSK GPSK LAA+VLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTV++A +SFTGEPAKTKKQAQKNAA+AAWSALK+ ++++ S+SS ESG NDE +
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSA---PLESGGNDELE 177
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSAS-IRREVIPYGDARSLNSLQHQNW-HCIPF 238
Q +ARYLA+L+ PE N S + +G ++ RR+++P +A SL S+ ++W H P
Sbjct: 178 QVTVARYLASLQPPEANKSAQRDGLLGQGSTPCRRDLMPNDNAISLYSMHCRDWSHSAPL 237
Query: 239 YPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEP 298
+L+ +Q+ P+ER +QQ +LLAL S P++ PRPQ+ P IRS+FQPDHG F +EP
Sbjct: 238 I-QLA-HQSWPKERASQQQNHLLALPSAPTTLPRPQMSPIIRSIFQPDHGPCFLPREQEP 295
Query: 299 VSLVPEIGPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQNNCPSN 358
L P IGPFLYFSN MPVPV N+SQV+IQEIEE P++E++W D S CW+ N PSN
Sbjct: 296 APLSPGIGPFLYFSNGSMPVPVSNLSQVTIQEIEEKPKVEQEWLNVDANSGCWKINFPSN 355
Query: 359 VPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQL-RNQTEQYNWF 417
+ LS EIP +S NS SE +QE LQGK EE S + S QL NQ ++ W
Sbjct: 356 LSGLSLVEIPKCPISPNSHSEP-IQEALQGKEEENSAGN------SAQLGTNQIQRLAWT 408
Query: 418 SPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVPPSFAA 477
SP F D R + + D LQN LDYLQS+ R +N+ M + GS PS AA
Sbjct: 409 SPRFADT--RSSAGASDEANLWLQNQQFLDYLQSNIRSQNAPMATYPGSSRVYTRPS-AA 465
Query: 478 PMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSRHYMAP 537
P+TIR+S +S RP SS+ V APPP R AA S+RP EG + G P +MAP
Sbjct: 466 PVTIRSSDASSIRKPRPMSSSLFVSAPPPTRYAAPTWSTRPTLEGAKYTGVRPCSRFMAP 525
Query: 538 AVHIRSVVPVCSAPPSKKYPDPSREKR 564
AV+IRSVVPVCSAPP+K S+E+R
Sbjct: 526 AVNIRSVVPVCSAPPAKDRAGGSQEER 552
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 329/566 (58%), Positives = 404/566 (71%), Gaps = 16/566 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESPTFC+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLSK GPSK LAA+VLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVF
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTV++A +SFTGEPAKTKKQAQKNAA+AAWSALK+ ++++ S+SS ESG NDE +
Sbjct: 121 CTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSALKRLSQASSSTSSA---PLESGGNDELE 177
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSAS-IRREVIPYGDARSLNSLQHQNW-HCIPF 238
Q +ARYLA+L+ PE N S + +G ++ RR+++P +A SL S+ ++W H P
Sbjct: 178 QVTVARYLASLQPPEANKSAQRDGLLGQGSTPCRRDLMPNDNAISLYSMHCRDWSHSAPL 237
Query: 239 YPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEP 298
+L+ +Q+ P+ER +QQ +LLAL S P++ PRPQ+ P IRS+FQPDHG F +EP
Sbjct: 238 I-QLA-HQSWPKERASQQQNHLLALPSAPTTLPRPQMSPIIRSIFQPDHGPCFLPREQEP 295
Query: 299 VSLVPEIGPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQNNCPSN 358
L P IGPFLYFSN MPVPV N+SQV+IQEIEE P++E++W D S CW+ N PSN
Sbjct: 296 APLSPGIGPFLYFSNGSMPVPVSNLSQVTIQEIEEKPKVEQEWLNVDANSGCWKINFPSN 355
Query: 359 VPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQTEQYNWFS 418
+ LS EIP +S NS SE +QE LQGK EE S ++ A++ NQ ++ W S
Sbjct: 356 LSGLSLVEIPKCPISPNSHSEP-IQEALQGKEEENSAGNS--AQLGT---NQIQRLAWTS 409
Query: 419 PGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVPPSFAAP 478
P F D R + + D LQN LDYLQS+ R +N+ M + GS PS AAP
Sbjct: 410 PRFADT--RSSAGASDEANLWLQNQQFLDYLQSNIRSQNAPMATYPGSSRVYTRPS-AAP 466
Query: 479 MTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSRHYMAPA 538
+TIR+S +S RP SS+ V APPP R AA S+RP EG + G P +MAPA
Sbjct: 467 VTIRSSDASSIRKPRPMSSSLFVSAPPPTRYAAPTWSTRPTLEGAKYTGVRPCSRFMAPA 526
Query: 539 VHIRSVVPVCSAPPSKKYPDPSREKR 564
V+IRSVVPVCSAPP+K S+E+R
Sbjct: 527 VNIRSVVPVCSAPPAKDRAGGSQEER 552
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 284/573 (49%), Positives = 356/573 (62%), Gaps = 47/573 (8%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGETFESP+FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+ +GPSK LAARVLDETGVYKNLLQET+HRAGL LPVYTT+RSGPGH PVFS
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVE+AG+SFTGE AKTKKQAQKNAA+ AWSAL+K ++ SS S ES N+EQ+
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRKLSQRGSPSSP----SVESECNEEQE 176
Query: 181 QAIIARYLATLKGPETNNSQ--REHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPF 238
Q IIAR LA+L+ ++NN Q R+H S SI R+ P S+Q+Q+ F
Sbjct: 177 QVIIARVLASLRPSKSNNKQNDRQHGQ-QRSGSICRDSTPQTPISC--SMQYQSTVDPSF 233
Query: 239 YPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEP 298
+PE+++YQ QE++ + Q LLAL + P P FPF++SMF+PDH YFP+ V++P
Sbjct: 234 FPEMAMYQMWQQEQLAQLQNRLLALPVPLAPQPSPHFFPFMQSMFRPDHCLYFPTEVQQP 293
Query: 299 VSLVPEI-----GPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQN 353
+++ P G Y SN ++P P+R S V+IQEIEE ++
Sbjct: 294 ITMGPRFSIAASGSSFYLSNHLVPEPMRGRSMVTIQEIEEKTEERSEF------------ 341
Query: 354 NCPSNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQL-RNQTE 412
S SE+ S ++ +E QE +Q ++ + S QL RNQ
Sbjct: 342 ---------SPSEVSVSPALGDNNTEAINQEPIQEDNKQNTEELGGKIATSVQLERNQPG 392
Query: 413 QYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVP 472
Q+ W S +D+R P +F+LQ D QS+ RP + +SS S
Sbjct: 393 QFGWTSRRSVDSRLGPI-------EFQLQRPHGFDSSQSNPRPYHPPGLSSYRSSRPPS- 444
Query: 473 PSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSR 532
+ AAP+ R S+ LRPQ+ + APP RT S RP PE M G P
Sbjct: 445 -TVAAPVMTRTGDPVSSVGLRPQNLANQMPAPPRMRTGIPPYSFRPRPERMDFGRGPP-- 501
Query: 533 HYMAPAVHIRSVVPVCSAPPSKKYPDPSREKRT 565
MAPAV IR+VVPVCSAPP++K P PS ++ T
Sbjct: 502 RAMAPAVQIRTVVPVCSAPPARKIPRPSSKEMT 534
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 280/570 (49%), Positives = 349/570 (61%), Gaps = 58/570 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGETFESP+FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+ +GPSK LAARVLDETGVYKNLLQET+HRAGL LPVYTT+RSGPGH PVFS
Sbjct: 61 AEVALNTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVE+AG+SFTGE AKTKKQAQKNAA+ AWSAL+K ES N+EQ+
Sbjct: 121 CTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSALRK---------------LESECNEEQE 165
Query: 181 QAIIARYLATLKGPETNNSQ--REHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPF 238
Q IIAR LA+L+ ++NN Q R+H S SI R+ P S+Q+Q+ F
Sbjct: 166 QVIIARVLASLRPSKSNNKQNDRQHGQ-QRSGSICRDSTPQTPISC--SMQYQSTVDPSF 222
Query: 239 YPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEP 298
+PE+++YQ QE++ + Q LLAL + P P FPF++SMF+PDH YFP+ V++P
Sbjct: 223 FPEMAMYQMWQQEQLAQLQNRLLALPVPLAPQPSPHFFPFMQSMFRPDHCLYFPTEVQQP 282
Query: 299 VSLVPEI-----GPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQN 353
+++ P G Y SN ++P P+R S V+IQEIEE ++
Sbjct: 283 ITMGPRFSIAASGSSFYLSNHLVPEPMRGRSMVTIQEIEEKTEERSEF------------ 330
Query: 354 NCPSNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQL-RNQTE 412
S SE+ S ++ +E QE +Q ++ + S QL RNQ
Sbjct: 331 ---------SPSEVSVSPALGDNNTEAINQEPIQEDNKQNTEELGGKIATSVQLERNQPG 381
Query: 413 QYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVP 472
Q+ W S +D+R P +F+LQ D QS+ RP + +SS S
Sbjct: 382 QFGWTSRRSVDSRLGPI-------EFQLQRPHGFDSSQSNPRPYHPPGLSSYRSSRPPS- 433
Query: 473 PSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSR 532
+ AAP+ R S+ LRPQ+ + APP RT S RP PE M G P
Sbjct: 434 -TVAAPVMTRTGDPVSSVGLRPQNLANQMPAPPRMRTGIPPYSFRPRPERMDFGRGPP-- 490
Query: 533 HYMAPAVHIRSVVPVCSAPPSKKYPDPSRE 562
MAPAV IR+VVPVCSAPP++K P S+E
Sbjct: 491 RAMAPAVQIRTVVPVCSAPPARKIPSSSQE 520
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 274/587 (46%), Positives = 337/587 (57%), Gaps = 58/587 (9%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGETFESP FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+ +GPS+ LAARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALNTLASRGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK--QAKSAFSSSSFSPPSSESGTNDE 178
CTVELAG+SFTGEPA+TKKQAQKNAA+AAWSALK+ Q S+ SSS S ++E
Sbjct: 121 CTVELAGMSFTGEPARTKKQAQKNAAMAAWSALKRLVQHGSSSSSSLSSSLVENRKGSEE 180
Query: 179 QDQAIIARYLAT-----LKGPETNNSQREH-RTIGVSASIRREVIPYGDARSLNSLQHQN 232
Q+Q +IAR+LA+ LK + N+ Q H R I V +++ P SL +Q QN
Sbjct: 181 QEQVVIARFLASVQPSELKINKQNDCQTGHERFIPVC----KDLTP--PTPSLYPMQSQN 234
Query: 233 WHCIPFYPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFP 292
W F PE+++YQ QE++ + LL L P+ P P + P+++S+ P+ +FP
Sbjct: 235 WAYPSFSPEIAIYQMWQQEQLLQLHNRLLTLQVPPAPPPAPPMLPYMQSVLPPNSHLFFP 294
Query: 293 SLVEEPVSLVPEI-----GPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGG 347
+E V + P I GP L S+ V VR S V+IQEI E K +
Sbjct: 295 LRKQETVPVGPRITIASSGPLLCLSDNVDSDSVRGKSAVTIQEINEE--------KPEDL 346
Query: 348 SDCWQNNCPSNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQL 407
SDC S S I + V N +E R +E S N ++
Sbjct: 347 SDC------------SPSIISDPPVLGNLSAEARFKESHDDDKNNAVESKVENVRLAENP 394
Query: 408 RNQTEQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDS--RPRNSTMVSSSG 465
Q+ N S G+ FR + G + QS + RP + M+ +
Sbjct: 395 SGQSSHRNTDS-GYSQVDFR---VQSPGVFVSCHASSQFSPRQSSTSCRPPPTVMIRNV- 449
Query: 466 SVGGSVPPSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRN 525
G P A P+ IR S+ RP + PP RT A S+RP P+ M
Sbjct: 450 ---GPRPLPAAPPVRIRTMGPVSSVP-RPHDLAAQIPGPPRMRTGAPSYSARPQPQRMDF 505
Query: 526 QGGMPSRHYMAPAVHIRSVVPVCSAPPSKKYPDPSREKRTEEQRGDI 572
G P +MAPAV IRSVVPVCSAPP P+R+ T Q G +
Sbjct: 506 VGVHP--RFMAPAVRIRSVVPVCSAPP------PARKMPTAGQEGAL 544
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 256/581 (44%), Positives = 335/581 (57%), Gaps = 73/581 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+YSCIREGPDHAPRFKA VNFNGETFESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ ++K+GPS LAARVLDETGVYKNLLQET+HRAGL LPVYTT+RSGPGHGP FS
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
C+VE+AG+ FTG+P++TKKQAQKNAA+AAWSAL+K ++ SSS+ S S ES N+EQ+
Sbjct: 121 CSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSRESKANEEQE 180
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHC--IPF 238
Q IIA LA+L + N +G S ++ L +Q WHC F
Sbjct: 181 QVIIAGVLASLHPSGSKNFSTSDSQLGWQKSTTTSLVSTQSTADLYPMQ---WHCGISSF 237
Query: 239 YPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEP 298
PE++LYQT Q+++ +QQ LL L+ P P+I+P ++S+FQPDH YFP+
Sbjct: 238 SPEVALYQTWQQQQIMQQQNRLLELTIQPIIPSTPEIYPLMQSVFQPDHCLYFPARELAS 297
Query: 299 VSLVPEI-----GPFLYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQN 353
V L P++ P Y SN+++P S ++I+EI+E K + C +
Sbjct: 298 VPLGPKLSIATSNPSFYSSNQIVPELNTGRSTLTIREIQEE--------KTEDPPVCTFS 349
Query: 354 NCPSNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQTE- 412
N +++ + E + G G+ NAE+ + +TE
Sbjct: 350 N-------------ETRVLTPAPEDEIQKHGGSGGRSR--------NAELVGEHCEKTEC 388
Query: 413 QYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVP 472
+W + I RP LQN S+D S R + SS+ S P
Sbjct: 389 DSHWSTRSVI----RPVNT-------ELQNPSSID----SSVLRAHSQASSNRSFR---P 430
Query: 473 PSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRR----TAASFCSSRPWPEGMRNQGG 528
P+ A+ +R S+ RPQ + +R PR T+ F R
Sbjct: 431 PAAASSSIVRTMCPTSSVGSRPQHAASRLRTGTPRSPGIPTSERFGMIR----------- 479
Query: 529 MPSRHYMAPAVHIRSVVPVCSAPPSKKYPDPSREKRTEEQR 569
P+ +MAPAV IRSVVPVCSAPP + + S+ K E+ +
Sbjct: 480 APTPLFMAPAVRIRSVVPVCSAPPRRSMAEVSQSKEKEDLK 520
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 256/581 (44%), Positives = 335/581 (57%), Gaps = 72/581 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+YSCIREGPDHAPRFKA VNFNGETFESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+K+GPS+ LAARVLDETGVYKNLLQET+HRAGL LPVYTT+RSGPGHGP FS
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVE+AG+ FTG+P++TKKQAQKNAA+AAWSAL+K ++ SSS+ S S ES N+EQ+
Sbjct: 121 CTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSALRKLSEHHLSSSTSSSFSLESKGNEEQE 180
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPFYP 240
Q IIAR LA+L + N + +G S ++ L + Q++ F P
Sbjct: 181 QVIIARVLASLHPSGSKNFSKSDIQLGWQKSTTTSLVSTQPTTDLYPMHCQHFGISSFSP 240
Query: 241 ELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEPVS 300
E++LYQ Q+++ +QQ LLAL+ P QI+P ++S+FQPDH YFP+ ++
Sbjct: 241 EVALYQIWQQQQIMQQQNRLLALTIQPIIPSTSQIYPLMQSVFQPDHCLYFPA---RELA 297
Query: 301 LVPEIGPFL---------YFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCW 351
VP +GP L Y SN++ P S ++I+EI+E ++E+
Sbjct: 298 SVP-VGPKLSIPSSSPSFYSSNQIGPELNTGRSTLTIKEIQEE-KIEDP----------- 344
Query: 352 QNNCPSNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQT 411
P S S L QR G +S+ NAE+ + ++
Sbjct: 345 --------PVCSFSNETRVLTPATEDESQR-----HGGSGSRSI----NAELGGEHCEKS 387
Query: 412 EQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSV 471
E + + G + P LQN S+D S R + SS+ S
Sbjct: 388 ECDSHWGTGSVHRPVNP----------ELQNPSSID----SSVLRAHSQASSNRSFR--- 430
Query: 472 PPSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGM-- 529
PP+ ++ +R S RPQ P +R PR + + GM
Sbjct: 431 PPAASSSSIVRTMCPTSFVGSRPQHVAPRLRTGTPRSPGIP----------IYERFGMIR 480
Query: 530 -PSRHYMAPAVHIRSVVPVCSAPPSKKYPDPSREKRTEEQR 569
P+ +MAPAV IRSVVPVCSAPP + + S+ K E+ +
Sbjct: 481 APTPLFMAPAVRIRSVVPVCSAPPRRSMAEVSQSKEKEDLK 521
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 194/344 (56%), Positives = 244/344 (70%), Gaps = 20/344 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+YSCIREGPDHAPRFK VNFNGETFESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+ +GPS+ LAARVLDETGVYKNLLQET+HRAGL LPVY T+R+GPGH P F
Sbjct: 61 AEVALNTLATRGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPNFY 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVE+AG+ FTG+PA+TKKQAQKNAA+AAWSAL+K + + SSS+ S SSES +N+EQ+
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAIAAWSALRKLSANQLSSSTSSSFSSESKSNEEQE 180
Query: 181 QAIIARYLATLKG------PETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWH 234
IIAR LA+L+ PE ++ R ++ S ++ + +Q+Q+
Sbjct: 181 HVIIARVLASLQSSGSKNFPECDHQHRWQKSTTTS------LVSTQPTPGMYPMQYQHCG 234
Query: 235 CIPFYPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPS- 293
F PEL+LYQT QE + + ++AL+ P P PQI+P ++S+ QPD YFPS
Sbjct: 235 ISNFSPELALYQTWQQE---QIMQQMMALTIQPIIPPAPQIYPLMQSVIQPDRYLYFPSK 291
Query: 294 -LVEEPVSLVPEIG---PFLYFSNRVMPVPVRNVSQVSIQEIEE 333
L PV I P Y+SN+++P S V+I+EI+E
Sbjct: 292 ELSSFPVGPNFSIATPRPPFYYSNQIVPQLNTGRSTVTIREIQE 335
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 479 MTIRASATASTASLR-PQSSNPLVRAPPPRRTAASFCSSRPWPEGM--RNQGGMPS---- 531
+TI S +S R P +S VR P + S R P + R + G+P
Sbjct: 398 ITIAHSQASSNRCFRSPAASYSTVRTTGPTSSTGSTVQHREVPMAVAPRLRTGVPQNPGM 457
Query: 532 ------RHYMAPAVHIRSVVPVCSAPPSKKYPDPSR 561
R MAPAV IRSVVPVCSAPP + + S+
Sbjct: 458 VRTPTPRFNMAPAVRIRSVVPVCSAPPRRSVAETSK 493
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 251/638 (39%), Positives = 343/638 (53%), Gaps = 104/638 (16%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+ IREGPDHAPRFKA VNFNGE FESPTFCSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS+ LAA+VLDETG+YKNLLQET+HRAGLKLPVYTTVRSGPGH P+F+
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSP-----------P 169
CTVELAG+SFTG+PAKTKKQAQKNAA+AAWSALK ++ +P
Sbjct: 121 CTVELAGMSFTGDPAKTKKQAQKNAAMAAWSALKHFKSYLVDGANAAPRLGSSSSPSAPS 180
Query: 170 SSESGTNDEQDQAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQ 229
SES N+EQ+ I+A LA L+ E N S ++ RR +S++
Sbjct: 181 LSESEKNEEQEPVILAHALAKLQRSEENWSSSQN-------GRRRGQQRSPPQKSMHPTS 233
Query: 230 HQNWHCIPF----YPELS----LYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRS 281
+ + IPF YP+LS YQ + QQ + SL + + FP +
Sbjct: 234 NVCFCPIPFQNLVYPDLSSESEFYQMWHRAHASPQQSHF----SLTPHARDHRSFPILH- 288
Query: 282 MFQPDHGYYFPSLVEEPVSLV-------PEIGPFLYFSNRVMPVPVRNVSQVSIQEI--E 332
F P + PS+ ++PVS + P + + FS+ + V + SQ +IQ+I E
Sbjct: 289 YFYPSQVLHTPSVEQDPVSSLRCSTGSSPSL--LVCFSDHPVSVASGSWSQFTIQQIHGE 346
Query: 333 ENPRMEEDWRKGDGGSDCWQNNCPSNVPRLSQSEIP-NSLVSFNSQSEQRMQEGLQGKGE 391
+N R+ ++W PS+ S ++ +SL S N +Q+ + + +
Sbjct: 347 QNQRVGKEWLI-----------LPSSAEAYSALDVSGSSLQSDNISDASTVQKSHEDQEK 395
Query: 392 EKSVSSAPNAEISNQLRNQTEQYNWFSPGF--IDARFRPTTISKDGDKFRLQNTVSLDYL 449
E S+ A A + E+ N GF + + PT + + +Q + +
Sbjct: 396 ECSLGGA-EAHLE-------EEANSSCHGFKSVASASCPTMVQDPAGRTEMQERKTAEKS 447
Query: 450 QSDS-------------RPRNSTMVSSSGSVGGSVPPSFAAP----MTIRASATASTASL 492
Q S P N +++ + S S +P + + +A +AS+
Sbjct: 448 QGKSYGWMPRASVWPGPSPPNHSLLYNLNSDSSPTQFSHGSPNSSSLDRKFRPSAVSASM 507
Query: 493 RPQSSN----------------PLVRAPPPRRTAASFCSSRPWPEGMRNQGGM-PSRHYM 535
RP SS P AP RT CS+R G N G + S ++
Sbjct: 508 RPISSALLHPSGLRYEAFRRQVPSPAAPVTIRTTIPVCSAR---AGAVNPGTLVSSTSFV 564
Query: 536 APAVHIRSVVPVCSAPPSKKYPDPSREKRTEEQRGDIS 573
AP V++RSVVPVCSAPP +K P + +++ E++ +S
Sbjct: 565 APPVNVRSVVPVCSAPPVRK---PEQNQKSIEEKETMS 599
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 232/587 (39%), Positives = 312/587 (53%), Gaps = 77/587 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGETFESP FCSTLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLPVYTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG P KTKKQAQKNAA+AAWS LK+ + SSS PP + +D+Q+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHD---DDDQE 177
Query: 181 QAIIARYLATLKGPETNNS----QREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCI 236
Q I+AR LA+L +TN Q+E + S RR P +A L H H
Sbjct: 178 QIIVARTLASLN--QTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRL-HLQKHAY 234
Query: 237 PFY-PELSLYQTCPQERVFRQQENLLALSSLPSSS-PRPQIFPFIRSMFQPDHGYYFPSL 294
P PE ++Y Q + +Q+ + + ++ S+ P P P + M+ P G +
Sbjct: 235 PSVPPEQAMYHMWHQVQATQQKPHFPMVPTMGSTGFPPP---PTVLHMYPPPRGQFTMPS 291
Query: 295 VEEPVSLV---PEIGPFL--YFSNRVMPVPVRNVSQ----VSIQEIEENPRMEEDWRKGD 345
++ + L+ PE P L YFS P P V + V++ +I E + D +
Sbjct: 292 SQDGLGLIPCYPEASPVLPRYFS----PYPASFVPRRPLPVNVHKIHEKRLVGADMVELP 347
Query: 346 GGSDCWQNNCP-------SNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSA 398
+ + P + V + E S + +S+ + + + S
Sbjct: 348 DAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESN 407
Query: 399 PNAEISNQLRNQTEQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNS 458
+ EI LR ++++ P +R P + + G + + D + RNS
Sbjct: 408 QDIEIMGGLRLESKKPAEQPPESSPSRVNPVLLCETGQRHHYSSVRHGDPVH-----RNS 462
Query: 459 TMVSSSGSVGGSVPPSFAAPMTIRASATAS------TASLRPQSSNPLVRAPPPRRTAAS 512
+S + S P IR A + + P+ +P +APP
Sbjct: 463 PQISVATS-----------PSPIRRGDPAHINIPQISVATPPECRSPRAQAPP------R 505
Query: 513 FCSSRPWPEGMRNQGGMPSRHY------MAPAVHIRSVVPVCSAPPS 553
F G R +PS Y +A +V IR+ +PVCSA P+
Sbjct: 506 F--------GTRMPVNLPSSLYQQRPPWLAASVTIRTTIPVCSARPN 544
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 234/581 (40%), Positives = 312/581 (53%), Gaps = 65/581 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGETFESP FCSTLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLPVYTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG P KTKKQAQKNAA+AAWS LK+ + SSS PP + +D+Q+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHD---DDDQE 177
Query: 181 QAIIARYLATLKGPETNNS----QREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCI 236
Q I+AR LA+L +TN Q+E + S RR P +A L H H
Sbjct: 178 QIIVARTLASLN--QTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRL-HLQKHAY 234
Query: 237 PFY-PELSLYQTCPQERVFRQQENLLALSSLPSSS-PRPQIFPFIRSMFQPDHGYYFPSL 294
P PE ++Y Q + +Q+ + + ++ S+ P P P + M+ P G +
Sbjct: 235 PSVPPEQAMYHMWHQVQATQQKPHFPMVPTMGSTGFPPP---PTVLHMYPPPRGQFTMPS 291
Query: 295 VEEPVSLV---PEIGPFL--YFSNRVMPVPVRNVSQ----VSIQEIEENPRMEEDWRKGD 345
++ + L+ PE P L YFS P P V + V++ +I E + D +
Sbjct: 292 SQDGLGLIPCYPEASPVLPRYFS----PYPASFVPRRPLPVNVHKIHEKRLVGADMVELP 347
Query: 346 GGSDCWQNNCP-------SNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSA 398
+ + P + V + E S + +S+ + + + S
Sbjct: 348 DAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESN 407
Query: 399 PNAEISNQLRNQTEQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNS 458
+ EI LR ++++ P +R P + + G + + D + RNS
Sbjct: 408 QDIEIMGGLRLESKKPAEQPPESSPSRVNPVLLCETGQRHHYSSVRHGDPVH-----RNS 462
Query: 459 TMVSSSGSVGGSVPPSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRP 518
+S + S P IR A PQ S V PP R+ ++ R
Sbjct: 463 PQISVATS-----------PSPIRRGDPAHINI--PQIS---VATPPECRSPSAQAPPR- 505
Query: 519 WPEGMRNQGGMPSRHY------MAPAVHIRSVVPVCSAPPS 553
G R +PS Y +A +V IR+ +PVCSA P+
Sbjct: 506 --FGTRMPVNLPSSLYQQRPPWLAASVTIRTTIPVCSARPN 544
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 232/587 (39%), Positives = 312/587 (53%), Gaps = 77/587 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGETFESP FCSTLR AEHAA
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLPVYTT+RSGPGH PVF+
Sbjct: 74 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 133
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG P KTKKQAQKNAA+AAWS LK+ + SSS PP + +D+Q+
Sbjct: 134 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHD---DDDQE 190
Query: 181 QAIIARYLATLKGPETNNS----QREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCI 236
Q I+AR LA+L +TN Q+E + S RR P +A L H H
Sbjct: 191 QIIVARTLASLN--QTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRL-HLQKHAY 247
Query: 237 PFY-PELSLYQTCPQERVFRQQENLLALSSLPSSS-PRPQIFPFIRSMFQPDHGYYFPSL 294
P PE ++Y Q + +Q+ + + ++ S+ P P P + M+ P G +
Sbjct: 248 PSVPPEQAMYHMWHQVQATQQKPHFPMVPTMGSTGFPPP---PTVLHMYPPPRGQFTMPS 304
Query: 295 VEEPVSLV---PEIGPFL--YFSNRVMPVPVRNVSQ----VSIQEIEENPRMEEDWRKGD 345
++ + L+ PE P L YFS P P V + V++ +I E + D +
Sbjct: 305 SQDGLGLIPCYPEASPVLPRYFS----PYPASFVPRRPLPVNVHKIHEKRLVGADMVELP 360
Query: 346 GGSDCWQNNCP-------SNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSA 398
+ + P + V + E S + +S+ + + + S
Sbjct: 361 DAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESN 420
Query: 399 PNAEISNQLRNQTEQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNS 458
+ EI LR ++++ P +R P + + G + + D + RNS
Sbjct: 421 QDIEIMGGLRLESKKPAEQPPESSPSRVNPVLLCETGQRHHYSSVRHGDPVH-----RNS 475
Query: 459 TMVSSSGSVGGSVPPSFAAPMTIRASATAS------TASLRPQSSNPLVRAPPPRRTAAS 512
+S + S P IR A + + P+ +P +APP
Sbjct: 476 PQISVATS-----------PSPIRRGDPAHINIPQISVATPPECRSPRAQAPP------R 518
Query: 513 FCSSRPWPEGMRNQGGMPSRHY------MAPAVHIRSVVPVCSAPPS 553
F G R +PS Y +A +V IR+ +PVCSA P+
Sbjct: 519 F--------GTRMPVNLPSSLYQQRPPWLAASVTIRTTIPVCSARPN 557
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA--KTKKQAQK 143
G+YKN LQE + R+ LP Y +R GP H P F TV G +F PA T + A+
Sbjct: 13 GMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEH 71
Query: 144 NAALAAWSALKKQAKSA 160
AA A + L K+ S+
Sbjct: 72 AAAEVALNELSKRGPSS 88
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/221 (66%), Positives = 176/221 (79%), Gaps = 7/221 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+C+REGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLS +GPS+ L ARVLDETG+YKNLLQET+HRAGL LPVYTT+RSGPGH P F+
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGEPAKTKKQA+KNAA+AAWSALK+ + ++ S E EQD
Sbjct: 124 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKRMPSLDYLTNKEVVESRE-----EQD 178
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGD 221
QA++AR L+ + + N Q R S + RR V Y D
Sbjct: 179 QAVVARVLSNFRSKDEYNKQA--RKKDCSQARRRLVKGYRD 217
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/202 (71%), Positives = 171/202 (84%), Gaps = 6/202 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLS +GP++ L ARVLDETG+YKNLLQET+HRAGL LPVYTTVRSGPGH PVF+
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGEPAKTKKQA+KNAA+AAWSALK+ F + S S E T +EQD
Sbjct: 121 CTVELAGMNFTGEPAKTKKQAEKNAAIAAWSALKR-----FPNLD-SLSSKEVDTREEQD 174
Query: 181 QAIIARYLATLKGPETNNSQRE 202
QA++AR L+ + + R+
Sbjct: 175 QAVVARVLSNFRSKDEGRYARK 196
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/191 (75%), Positives = 163/191 (85%), Gaps = 3/191 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGE FESP FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLP+YTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG +FTG P KTKKQAQKNAA+AAWS LK+ + SSS P + ++EQ+
Sbjct: 121 CTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDLKQLPRIGEPSSSSCPADQD---DEEQE 177
Query: 181 QAIIARYLATL 191
Q I+ R LA+L
Sbjct: 178 QVIVTRTLASL 188
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/191 (75%), Positives = 163/191 (85%), Gaps = 3/191 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGE FESP FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLP+YTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG +FTG P KTKKQAQKNAA+AAWS LKK + SSS PP + ++ Q+
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKLPRVGEPSSSSCPPDQD---DEVQE 177
Query: 181 QAIIARYLATL 191
Q ++ R LA+L
Sbjct: 178 QVVVTRTLASL 188
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 230/369 (62%), Gaps = 48/369 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLS +GPS+ L ARVLDETGVYKNLLQET+HRAGL LPVYTTVRSGPGH PVF+
Sbjct: 64 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 123
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGE AKTKKQA+KNAA+AAWSALK+ + S S S E+ + +E
Sbjct: 124 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVP----NLGSLSHLSKEAESREE-- 177
Query: 181 QAIIARYLATLKGP-ETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPFY 239
Q ++AR L+ + E+ +R + +R + S NS Q Q W
Sbjct: 178 QVVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWR----- 232
Query: 240 PELSLYQTCPQERVFRQQENLLALSSLPSSSPRP--QIFPFIRSMFQPDHGYYFPSLVEE 297
P L + P+ + Q +AL LP PR +I P
Sbjct: 233 PMDLLMDSVPEGGTAQNQNCFVAL--LPPPPPRTASKILP-------------------- 270
Query: 298 PVSLVPEIGPFLYFSNRVMPVPVRNVSQVSIQEI----EENPRMEEDWRKGDGGSDCW-- 351
P+S P LY S R +PV SQV + E+ EE+ R EE+W DG S+
Sbjct: 271 PIS--PRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWL--DGKSNLIRK 326
Query: 352 --QNNCPSN 358
+ CPSN
Sbjct: 327 PTEKECPSN 335
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 230/369 (62%), Gaps = 48/369 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLS +GPS+ L ARVLDETGVYKNLLQET+HRAGL LPVYTTVRSGPGH PVF+
Sbjct: 61 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGE AKTKKQA+KNAA+AAWSALK+ + S S S E+ + +E
Sbjct: 121 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKRVP----NLGSLSHLSKEAESREE-- 174
Query: 181 QAIIARYLATLKGP-ETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPFY 239
Q ++AR L+ + E+ +R + +R + S NS Q Q W
Sbjct: 175 QVVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWR----- 229
Query: 240 PELSLYQTCPQERVFRQQENLLALSSLPSSSPRP--QIFPFIRSMFQPDHGYYFPSLVEE 297
P L + P+ + Q +AL LP PR +I P
Sbjct: 230 PMDLLMDSVPEGGTAQNQNCFVAL--LPPPPPRTASKILP-------------------- 267
Query: 298 PVSLVPEIGPFLYFSNRVMPVPVRNVSQVSIQEI----EENPRMEEDWRKGDGGSDCW-- 351
P+S P LY S R +PV SQV + E+ EE+ R EE+W DG S+
Sbjct: 268 PIS--PRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWL--DGKSNLIRK 323
Query: 352 --QNNCPSN 358
+ CPSN
Sbjct: 324 PTEKECPSN 332
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 188/369 (50%), Positives = 230/369 (62%), Gaps = 48/369 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+VLS +GPS+ L ARVLDETGVYKNLLQET+HRAGL LPVYTTVRSGPGH PVF+
Sbjct: 132 AEVALNVLSTRGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 191
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGE AKTKKQA+KNAA+AAWSALK+ + S S S E+ + +E
Sbjct: 192 CTVELAGMNFTGESAKTKKQAEKNAAIAAWSALKR----VPNLGSLSHLSKEAESREE-- 245
Query: 181 QAIIARYLATLKGP-ETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIPFY 239
Q ++AR L+ + E+ +R + +R + S NS Q Q W
Sbjct: 246 QVVVARVLSNFRSKDESRPIRRWDQNQARRRMVRGHGGSGSSSTSNNSQQFQKWR----- 300
Query: 240 PELSLYQTCPQERVFRQQENLLALSSLPSSSPRP--QIFPFIRSMFQPDHGYYFPSLVEE 297
P L + P+ + Q +AL LP PR +I P
Sbjct: 301 PMDLLMDSVPEGGTAQNQNCFVAL--LPPPPPRTASKILP-------------------- 338
Query: 298 PVSLVPEIGPFLYFSNRVMPVPVRNVSQVSIQEI----EENPRMEEDWRKGDGGSDCW-- 351
P+S P LY S R +PV SQV + E+ EE+ R EE+W DG S+
Sbjct: 339 PIS--PRDTLSLYPSTRPIPVQAIGRSQVKMPEVPTLLEEHQRDEEEWL--DGKSNLIRK 394
Query: 352 --QNNCPSN 358
+ CPSN
Sbjct: 395 PTEKECPSN 403
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 45 ESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLP 104
+S FC RQ HA + V K G E ++KN LQE + R+ LP
Sbjct: 46 DSDCFCPE-RQGTHAN----VGVREKTG-----------EVDMFKNQLQELAQRSCFNLP 89
Query: 105 VYTTVRSGPGHGPVFSCTVELAGVSFTGEP-AKTKKQAQKNAALAAWSALKKQAKS 159
Y +R GP H P F +V G F T +QA+ AA A + L + S
Sbjct: 90 SYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAAEVALNVLSTRGPS 145
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/204 (71%), Positives = 169/204 (82%), Gaps = 6/204 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE+FESPTFCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLP YTT+RSGPGH P+F+
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPMFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG FTG P KTKKQAQKNAA+AAWS LK+ + ++SS S ++EQ+
Sbjct: 121 CTVELAGRIFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEAASS----SPLDHDDEEQE 176
Query: 181 QAIIARYLATLKGPETNNSQREHR 204
Q I+AR L +L +TN + H+
Sbjct: 177 QVIVARTLESLN--QTNEGKSAHQ 198
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/156 (85%), Positives = 145/156 (92%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKA VNFNGE FESP FCSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLP+YTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
CTVELAG +FTG P KTKKQAQKNAA+AAWS LKK+
Sbjct: 121 CTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKR 156
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 134/167 (80%), Positives = 151/167 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQELAQRSCFNLP+YSCIREGPDHAPRFKA VNFNGE FESPTFCSTLRQAEHAA
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ +++GPS+ LAARVLDETGVYKNLLQET+HRAGL LPVYTT+RSGPGH P +S
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFS 167
CTVE+AG+ FTG+PA+TKKQAQKNAA+AAWSAL+K A +SFS
Sbjct: 121 CTVEIAGMHFTGDPARTKKQAQKNAAMAAWSALRKCEHFAAVIASFS 167
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/214 (65%), Positives = 164/214 (76%), Gaps = 12/214 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+C REGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS KGPSK L ARVLDETG+YKNLLQET+HRAGL LPVYT+VRSGPGH P FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG+SF GE AKTKKQA+KNAA+AAW +L+K PS + +E++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM------------PSLDPLRGEEKE 168
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRR 214
Q ++AR L+ + E + V +IR+
Sbjct: 169 QEVVARVLSRFRPKEVKRREPNQSRRTVIKTIRQ 202
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 159/191 (83%), Gaps = 2/191 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA V FNGE+FESP F STLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLP+YTT+RSGPGH P F+
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPTFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG FTG P KTKKQAQKNAA+AAWS LK+ ++ S SS S ++E++
Sbjct: 121 CTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQLPLVGEGEAASS--SSPSDHDEEKE 178
Query: 181 QAIIARYLATL 191
QA +AR L L
Sbjct: 179 QATVARSLENL 189
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 135/158 (85%), Positives = 145/158 (91%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFK+ VNFNGETFESPTF STLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ L+ +GPSK L A VLDETGVYKNLLQET+HRAGLKLPVYTT+RSGPGH PVFS
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
C VELAG+SFTGE A+TKKQAQKNAA+AAWSALK+ K
Sbjct: 121 CNVELAGMSFTGESARTKKQAQKNAAMAAWSALKRFCK 158
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%), Gaps = 13/196 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEV+L+VLS + PSK L A++LDETG+YKNLLQET+HRAGL LP+YT+VRSG H P FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGE AKTKKQA+KNAA+AAWS+LKK SS ++E++
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------------SSLDSQDEEKE 167
Query: 181 QAIIARYLATLKGPET 196
Q +AR L+ K E
Sbjct: 168 QEAVARVLSRFKPKEV 183
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/195 (69%), Positives = 159/195 (81%), Gaps = 13/195 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEV+L+VLS + PSK L A++LDETG+YKNLLQET+HRAGL LP+YT+VRSG H P FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG+SFTGE AKTKKQA+KNAA+AAWS+LK+ SS ++E++
Sbjct: 121 CTVELAGMSFTGESAKTKKQAEKNAAIAAWSSLKRM-------------SSLDSQDEEKE 167
Query: 181 QAIIARYLATLKGPE 195
Q +AR L+ K E
Sbjct: 168 QEAVARVLSRFKPKE 182
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/249 (59%), Positives = 181/249 (72%), Gaps = 9/249 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA VNFNGE FESP +C+TLRQAEHAA
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS++GPS+ LAAR+LDETGV KNLLQET+ RAG+ LPVY T RSGPGH PVF+
Sbjct: 125 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPVFT 184
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVE+A +SF+GE AKTKKQA+KNAA+AAWSA+++ A P ++E ++EQ+
Sbjct: 185 CTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAIQQLANQGRG----VPLATEGEVSEEQE 240
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSAS---IRREVIPYGDARSLNSLQHQNWHCIP 237
Q IAR LA G E+ Q H T S+S IR + D S + H P
Sbjct: 241 QNTIARALAQHYGKESQ--QLPHSTQNPSSSVMPIRLRTLTSRDGLQPGSPRLNQSHSGP 298
Query: 238 FYPELSLYQ 246
+ +LS+ Q
Sbjct: 299 WATDLSMEQ 307
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/196 (69%), Positives = 157/196 (80%), Gaps = 12/196 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY+C REGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS KGPSK L ARVLDETG+YKNLLQET+HRAGL LPVYT+VRSGPGH P FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG+SF GE AKTKKQA+KNAA+AAW +L+K P + +E++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM------------PRLDPLRGEEKE 168
Query: 181 QAIIARYLATLKGPET 196
Q I+AR L+ + E
Sbjct: 169 QEIVARVLSRFRPKEV 184
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 138/188 (73%), Positives = 155/188 (82%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTGEPAK KKQA+KNAA+AAWS+LK+ AK A SS SSE+ NDE +
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAASS------SSETENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/188 (72%), Positives = 155/188 (82%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTGEPAK KKQA+KNAA+AAWS+LK+ AK A +S SSE+ NDE +
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANS------SSETENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/188 (72%), Positives = 155/188 (82%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +C+TLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTGEPAK KKQA+KNAA+AAWS+LK+ AK A +S SSE+ NDE +
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEAANS------SSETENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 127/156 (81%), Positives = 145/156 (92%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEV+L+VLS + PSK L A++LDETG+YKNLLQET+HRAGL LP+YT+VRSG H P FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
CTVELAG++FTGE AKTKKQA+KNAA+AAWS+LKK+
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKK 156
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN LQE A R+ +LP Y+ +R G H P F V G TF + T +QAE A
Sbjct: 87 IYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFSCTVELAGMTFTGES-AKTKKQAEKNA 145
Query: 61 AEVALDVLSKKGPSKVLAARVL 82
A A L KK + + ARVL
Sbjct: 146 AIAAWSSLKKKKEQEAV-ARVL 166
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 152/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAA++LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
VELAG++FTGEPAK KKQA+KNAA+AAWSALK+ AK SS S+E NDE +
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASS------STEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/188 (71%), Positives = 152/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAA++LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
VELAG++FTGEPAK KKQA+KNAA+AAWS+LK+ AK SS S+E NDE +
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASS------STEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTG+PAK KKQA+KNAA+AAWS+LK+ AK +SSS P + DE +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKE--TSSSMPEPEN----IDELE 174
Query: 181 QAIIARYL 188
Q IIAR L
Sbjct: 175 QVIIARAL 182
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 134/195 (68%), Positives = 162/195 (83%), Gaps = 4/195 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSC NLP+Y+CIREGPDHAPRFKA V+FNGE FESP +C+TLRQAEHAA
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS++GPS+ LAAR+LDETGV KNLLQET+ RAG+ LPVY+T RSGPGH PVF+
Sbjct: 79 AEVALNTLSRRGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPVFT 138
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELA ++F+GE AKTKKQA+KNAA+AAWSALK+ A S S ++++ ++EQ+
Sbjct: 139 CTVELAKMTFSGEAAKTKKQAEKNAAMAAWSALKQFANQGRSVSL----ATDAEVSEEQE 194
Query: 181 QAIIARYLATLKGPE 195
Q IA+ LA G E
Sbjct: 195 QNTIAKALAQHFGKE 209
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 275 bits (702), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 151/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FE P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALTSLSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTGEPAK KKQA+KNAA+AAWS+LK+ AK SS SSE +DE +
Sbjct: 121 GTVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKEDASS------SSEPENSDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 135/188 (71%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LA+R+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNALSNRGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTG+PAK KKQA+KNAA+AAWS+LK+ AK +SSS P + DE +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKE--TSSSMPEPEN----IDELE 174
Query: 181 QAIIARYL 188
Q IIAR L
Sbjct: 175 QVIIARAL 182
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 151/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FE+P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AE AL+ LS +GPS LAA++LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEAALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
VELAG++FTGEPAK KKQA+KNAA+AAWSALK+ AK SS S+E NDE +
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKETASS------STEPENNDEVE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 131/162 (80%), Positives = 144/162 (88%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+AAV FNGETFE P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS LAARVLDETGVYKNLLQET+HRAGLKLP YTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFS 162
TVELAG+SF G+PA+TKKQA+KNAA+AAWS+LK+ SA S
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQSTSSAQS 162
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 149/181 (82%), Gaps = 10/181 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+AAV FNGETFE P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS LAARVLDETGVYKNLLQET+HRAGLKLP YTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+SF G+PA+TKKQA+KNAA+AAWS+LK+ ++ E G DEQ+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPEA----------RKEPGAGDEQE 170
Query: 181 Q 181
Sbjct: 171 H 171
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 133/181 (73%), Positives = 149/181 (82%), Gaps = 10/181 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRF+AAV FNGETFE P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS LAARVLDETGVYKNLLQET+HRAGLKLP YTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+SF G+PA+TKKQA+KNAA+AAWS+LK+ ++ E G DEQ+
Sbjct: 121 STVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQMPEA----------RKEPGAGDEQE 170
Query: 181 Q 181
Sbjct: 171 H 171
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 134/192 (69%), Positives = 153/192 (79%), Gaps = 7/192 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF PT C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLP YTTVRSGPGH PVF+
Sbjct: 61 AEVALARLSTRGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPVFA 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
+VELAG+SF G+ A+TKKQA+KNAA+ AWSALK+ ++ P + G +EQ+
Sbjct: 121 SSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQMPEAR------KEPGNGCG-GEEQE 173
Query: 181 QAIIARYLATLK 192
++AR LA LK
Sbjct: 174 HVVVARVLAALK 185
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 149/188 (79%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS + PS LAAR+LDETGVYKNLLQE + R G LP Y T RSG GH PVF+
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+ FTGEPAK KKQA+KNAA+AAWS+LK+ AK S S+E NDE +
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARS------STEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 271 bits (692), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 149/188 (79%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS + PS LAAR+LDETGVYKNLLQE + R G LP Y T RSG GH PVF+
Sbjct: 61 AEVALNSLSNRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+ FTGEPAK KKQA+KNAA+AAWS+LK+ AK S S+E NDE +
Sbjct: 121 GTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETARS------STEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 139/155 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TVELAG+SF G+PAKTKK A+KNAA+AAWS+LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/233 (61%), Positives = 167/233 (71%), Gaps = 9/233 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+SF G+PAKTKK A+KNAA+AAWS+LK+ ++ G +EQ+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMPEAR--------KEPGGGGGEEQE 172
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNW 233
++AR LA LK P + +AS+ ++ + S SL W
Sbjct: 173 HVVVARVLAALK-PRDDCGGGGGEGKAAAASLPKKHLAGASCSSATSLYRHQW 224
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 151/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FE P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GP LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
VELAG++FTGEPAK KKQA+KNAA+AAWSALK+ AK + SS SSE NDE +
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASS------SSEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 151/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FE P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GP LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNALSNRGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
VELAG++FTGEPAK KKQA+KNAA+AAWSALK+ AK + SS SSE NDE +
Sbjct: 121 GIVELAGITFTGEPAKNKKQAEKNAAMAAWSALKQLAKESASS------SSEPENNDELE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QITIARAL 182
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/233 (61%), Positives = 167/233 (71%), Gaps = 9/233 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+SF G+PAKTKK A+KNAA+AAWS+LK+ ++ G +EQ+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMPEAR--------KEPGGGGGEEQE 172
Query: 181 QAIIARYLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNW 233
++AR LA LK P + +AS+ ++ + S SL W
Sbjct: 173 HVVVARVLAALK-PRDDCGGGGGEGKAAAASLPKKHLAGASCSSATSLYRHQW 224
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/192 (70%), Positives = 153/192 (79%), Gaps = 8/192 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG+SF G+PAKTKK A+KNAA+AAWS+LK+ ++ G +EQ+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQMPEAR--------KEPGGGGGEEQE 172
Query: 181 QAIIARYLATLK 192
++AR LA LK
Sbjct: 173 HVVVARVLAALK 184
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/193 (69%), Positives = 159/193 (82%), Gaps = 4/193 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+YSCIREGPDHAPRFKA VNFNGE FESPT+ STLR AEHAA
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS++GP + LAAR+LDETGVYKNLLQET+ RAG+ LP+YTTVRSGPGH PVF+
Sbjct: 64 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 123
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTV + G+ FTGE AKTKKQA+KNAA+ AWS+LK+ AK +S++ ES +EQ+
Sbjct: 124 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQYAKQGGTSATL----LESEVTEEQE 179
Query: 181 QAIIARYLATLKG 193
Q +AR LA G
Sbjct: 180 QNFVARALARAHG 192
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF 130
G++KN LQE + R+ LP Y+ +R GP H P F TV G F
Sbjct: 3 GMFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVF 47
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 142/182 (78%), Gaps = 27/182 (14%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA VNFNGE FESP +C+TLRQAEHAA
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 61 AEVALDVLSKKGPSKVLAARVL---------------------------DETGVYKNLLQ 93
AEVAL+ LS++GPS+ LAAR+L DETGV KNLLQ
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLLQ 349
Query: 94 ETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
ET+ RAG+ LPVY T RSGPGH PVF+CTVE+A ++F+GE AKTKKQA+KNAA+AAWSAL
Sbjct: 350 ETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSAL 409
Query: 154 KK 155
K+
Sbjct: 410 KQ 411
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Query: 19 SYSCIREGPDHAPRFKAAV-NFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVL 77
S +C+ APR + + G ES F + R+ E A + + + G S+ L
Sbjct: 161 SGACLCGEGRSAPRCRVSAPEIGGWWSESRAFWRSGRRFELRGLGGAREEVERGGSSRAL 220
Query: 78 AARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAK 136
G+YKN LQE + R+ LP Y +R GP H P F TV G F
Sbjct: 221 WCGERVVAGMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCN 280
Query: 137 TKKQAQKNAALAAWSALKKQAKS 159
T +QA+ AA A + L ++ S
Sbjct: 281 TLRQAEHAAAEVALNTLSRRGPS 303
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/191 (71%), Positives = 159/191 (83%), Gaps = 10/191 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+YSCIREGPDHAPRFKAAVNFNGE FESP +CSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AE+AL+VLS++GPS+ LAAR+LDETGV+KNLLQET+ RA + LP YTT RSGPGH PVF+
Sbjct: 61 AELALNVLSRRGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPS---SESGTND 177
C VE+AG++FTG+ KTKKQA+KNAA+AAW+ LK+ AK +PPS S+ T D
Sbjct: 121 CVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATLKQFAK------KLAPPSLFYSDEMTED 174
Query: 178 EQDQAIIARYL 188
Q+Q IAR L
Sbjct: 175 -QEQISIARVL 184
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+C+REGPDHAPRFKAAVNFNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP+YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG+PAK KKQA+KNAA AAWSALK+ + +S S+E NDEQ+
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSALKQLVREEVNS------SNEPENNDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/188 (70%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+C+REGPDHAPRFKAAVNFNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG+PAK KKQA+KNAA AAWS+L++ + SS S+E +NDEQ+
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASS------SNEPESNDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/188 (71%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+C+REGPDHAPRFKAAVNFNGE FESP F STLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP+YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG+ AK KKQA+KNAA AAWSALK+ + +S S+E+ +DEQ+
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSALKQLVREEVNS------SNETENSDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 131/160 (81%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQR+CFNLP Y CIR+GPDHAPRF+A VNFNGE FESP +CSTLRQAE A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVA++ LSK+GPS L A+ LD+TGVYKNLLQE +HRAGL LPVYTT RSGP H PVF
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
C V++ G F G+PA TKKQA++N A+AAWSALK+ K
Sbjct: 121 CIVDVFGTRFNGKPAATKKQAEQNTAMAAWSALKQSEKDV 160
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/143 (81%), Positives = 126/143 (88%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPS C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 121 CTVELAGVSFTGEPAKTKKQAQK 143
TVELAG+SF G+PAKTKK A+K
Sbjct: 144 STVELAGMSFAGDPAKTKKHAEK 166
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 83 DETG--VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKK 139
DE G +YKN LQE + R+ LP R GP H P F TV G +F G T +
Sbjct: 18 DEGGGSMYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLR 77
Query: 140 QAQKNAALAAWSAL 153
QA+ AA A + L
Sbjct: 78 QAEHAAAEVALARL 91
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/188 (70%), Positives = 152/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+C+REGPDHAPRFKAAVNFNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP+YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++F G+PAK KKQA+KNAA AAWSALK+ + +S S+E DEQ+
Sbjct: 121 CTVELAGITFAGDPAKNKKQAEKNAASAAWSALKQLVREEVNS------SNEPENIDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/155 (78%), Positives = 140/155 (90%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+YSCIREGPDHAPRFKA VNFNGE FESPT+ STLR AEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS++GP + LAAR+LDETGVYKNLLQET+ RAG+ LP+YTTVRSGPGH PVF+
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
CTV + G+ FTGE AKTKKQA+KNAA+ AWS+LK+
Sbjct: 121 CTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQ 155
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/188 (69%), Positives = 152/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+C+REGPDHAPRFKAAV FNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG+ AK KKQA+KNAA AAWS+LK+ A+ +S ++E NDEQ+
Sbjct: 121 CTVELAGITFTGDHAKNKKQAEKNAASAAWSSLKQLAREEANS------TNEPENNDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 128/155 (82%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY IREGP+HAPRFKA + FNGE FE+P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEV L+ LS +GPS LA ++LDETGVYKNL+QE + R G LP Y T RSG GH P+F
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
VEL G++FTGEPAK KKQA+KNAA+AAWSALK+
Sbjct: 121 RIVELTGITFTGEPAKNKKQAEKNAAMAAWSALKR 155
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/188 (68%), Positives = 151/188 (80%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+C+REGPDHAPRFKA+V FNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG+ FTG+ AK KKQA+KNAA AAW++LK+ A+ +S ++E NDEQ+
Sbjct: 121 CTVELAGIIFTGDHAKNKKQAEKNAASAAWASLKQLAREEANS------TNEPENNDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/133 (81%), Positives = 124/133 (93%), Gaps = 2/133 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQELAQRSCFNLP+Y+CIREGPDHAPRFKA+VNFNGE FESP++C+TLRQAEHAA
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVL--DETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPV 118
AEVAL+VLS +GP++ L ARVL DETG+YKNLLQET+HRAGL LP YTTVRSGPGH PV
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 119 FSCTVELAGVSFT 131
F+CTVELAG++FT
Sbjct: 121 FTCTVELAGMNFT 133
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNA 145
++KN LQE + R+ LP Y +R GP H P F +V G F T +QA+ A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 146 ALAAWSAL 153
A A + L
Sbjct: 61 AEVALNVL 68
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 122/192 (63%), Gaps = 21/192 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KNQLQ+LA R F+LPSYS R+GP H P FKA V F ETFESP F TLRQAEHAA
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAA 325
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A VAL L+K+G S +DE+ +YKN LQE + + G+ P Y T RSGP H P+F
Sbjct: 326 AAVALKSLTKEGFS-------IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFK 378
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSE---SGTND 177
TV+ AG +F G+ A +KKQA+KNAA+AAWSA+K + P SE +GT
Sbjct: 379 STVKFAGTTFAGKEANSKKQAEKNAAMAAWSAVKNDS-----------PDSEDTNTGTKK 427
Query: 178 EQDQAIIARYLA 189
E +Q + A A
Sbjct: 428 ELEQNMTASTTA 439
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 55/72 (76%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN+LQE+AQ+ C +LP Y REGPDHAPRFKA V +NG FESP FC T ++A++AA
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 61 AEVALDVLSKKG 72
AE AL+VL K
Sbjct: 61 AEFALEVLLGKA 72
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA--KTKKQAQKN 144
++KN LQE + + + LP Y + R GP H P F TV G +F PA KT K+AQ
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFES-PAFCKTAKEAQNA 59
Query: 145 AALAAWSALKKQAK 158
AA A L +A+
Sbjct: 60 AAEFALEVLLGKAE 73
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 118/205 (57%), Gaps = 22/205 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ AQ+ LP YS GP H RFK+ V +T+ESP F TL+ AEHAA
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++AL LS G + D+ GVYKNLLQE + + G +LPVY+T +SG H P F
Sbjct: 218 AKLALMSLSPAGFQE-------DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFL 270
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSE-------- 172
TVE+ G +F G+ AKTKK A+ NAA AA++ LK++ +S + S SP E
Sbjct: 271 STVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKER-RSNLNHKSLSPSGQELRGVESSS 329
Query: 173 -----SGTNDEQDQAIIARYLATLK 192
SGT D Q Q II++ LK
Sbjct: 330 FNSESSGTADLQ-QNIISKLTLVLK 353
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF-TGEPAKTKKQAQKNAAL 147
K LQE HR P Y+T + GP H P F TV + G+SF T PA++ K+AQ NAA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 148 AAWSAL 153
A L
Sbjct: 63 LAIQYL 68
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M K +LQEL R +N P YS ++GP H P F A V+ G +F + + ++A+ A
Sbjct: 1 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 60
Query: 61 AEVALDVLSKKGP 73
A +A+ L+ P
Sbjct: 61 AGLAIQYLTDPKP 73
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 6/159 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN+LQ +Q+ LP Y+C R+GP HA RF+ V +G+T+ES F TL+ AE+A
Sbjct: 203 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 262
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+VAL L + G A+ ++G+YKNLLQE + + GL LP Y+T +SG H PVF
Sbjct: 263 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 316
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
TV++ +F G+P++TKKQA+ +AA A+ +K+ ++S
Sbjct: 317 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQS 355
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+K +LQEL R + LP YS +++G DH PRF+A V +G+ F SPT + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALDVLS 69
A++A D S
Sbjct: 61 AKLAFDFFS 69
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNA 145
++K LQE HR KLP Y+ V+ G H P F TV + G F P+K+ KQAQ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 ALAAW 150
A A+
Sbjct: 61 AKLAF 65
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 105/159 (66%), Gaps = 6/159 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN+LQ +Q+ LP Y+C R+GP HA RF+ V +G+T+ES F TL+ AE+A
Sbjct: 4 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+VAL L + G A+ ++G+YKNLLQE + + GL LP Y+T +SG H PVF
Sbjct: 64 AKVALMSLCQDG------AQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFV 117
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
TV++ +F G+P++TKKQA+ +AA A+ +K+ ++S
Sbjct: 118 STVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQS 156
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 73/82 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+ ++EGPDHAPRFKA VNFNG+ F++P +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVL 82
AEV L+ L+ +GPS LAA++L
Sbjct: 61 AEVTLNSLTHRGPSHSLAAKIL 82
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF-TGEPAKTKKQAQKNA 145
+YKN LQE + R+ LP YT+++ GP H P F V G F T T +QA+ +A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 146 A 146
A
Sbjct: 61 A 61
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++A+ L+ + P + A YKNLLQE + + LP Y T SGP H P F+
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
TVE AG F+GE AKTKK A+ +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++A+ L+ + P + A YKNLLQE + + LP Y T SGP H P F+
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
TVE AG F+GE AKTKK A+ +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++A+ L+ + P + A YKNLLQE + + LP Y T SGP H P F+
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
TVE AG F+GE AKTKK A+ +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP + T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
++AL L ++ S + +V + YKNLLQE + + G LPVY+T G P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGT 175
TV SF GEPA TKKQA+ NAA A+ + + K+A SS+ P GT
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSSTVLRGPHLGQGT 257
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHA 59
MYK++LQEL Q+ + P Y+ G HAP F A V+ NG F +P + + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AA+ A D + YK+ LQ + + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 SCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQAKSA 160
V + G +F E T K+A+ AA A +L ++A S+
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 2/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K+QLQ AQ+ F LP YSC R GP H+ RFK V NG+TFES + STL +AEHAA
Sbjct: 87 LFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFKCKVTVNGQTFESLEYFSTLNKAEHAA 146
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+ AL L G +V + +DE+G YKNLLQE + R G LP Y+T +SG H P F
Sbjct: 147 AKAALMSLLPNGVEEV-SFLFMDESG-YKNLLQELAQREGCGLPTYSTNKSGEAHVPTFI 204
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
TVE+ G FTG+ AKTKKQA+ +AA A++ALK++
Sbjct: 205 STVEIEGEIFTGQGAKTKKQAEMSAAKTAYTALKQR 240
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 74/130 (56%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK++LQEL Q+ + LP+Y R+G H PRF A V N +F SP+ +T ++A++ A
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++A + S PS + V D ++K+ LQ + + LPVY+ R GP H F
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 121 CTVELAGVSF 130
C V + G +F
Sbjct: 121 CKVTVNGQTF 130
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP + T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
++AL L ++ S + +V + YKNLLQE + + G LPVY+T G P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGT 175
TV SF GEPA TKKQA+ NAA A+ + + K+A SS+ P GT
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSSTVLRGPHLGQGT 257
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHA 59
MYK++LQEL Q+ + P Y+ GP HAP F A V+ NG F +P + + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AA+ ALD + YK+ LQ + + G LP Y T+R GPGH F
Sbjct: 61 AAKAALD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 SCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQAKSA 160
V + G +F E T K+A+ AA A +L ++A S+
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP + T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
++AL L ++ S + +V + YKNLLQE + + G LPVY+T G P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGT 175
TV SF GEPA TKKQA+ NAA A+ + + K+A SS+ P GT
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSSTVLRGPHLGQGT 257
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHA 59
MYK++LQEL Q+ + P Y+ GP HAP F A V+ NG F +P + + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AA+ A D + YK+ LQ + + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 SCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQAKSA 160
V + G +F E T K+A+ AA A +L ++A S+
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 81/108 (75%), Gaps = 6/108 (5%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+CTVELAG++FTG+PAK KKQ
Sbjct: 73 LLDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNKKQ 132
Query: 141 AQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYL 188
A+KNAA AAWS+L++ + SS S+E +NDEQ+Q IAR L
Sbjct: 133 AEKNAASAAWSSLRQLVRQEASS------SNEPESNDEQEQIRIARAL 174
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN LQE+AQR LPSY+ R G H P F V G TF +QAE A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNA 137
Query: 61 AEVALDVL 68
A A L
Sbjct: 138 ASAAWSSL 145
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 160/544 (29%), Positives = 227/544 (41%), Gaps = 113/544 (20%)
Query: 33 FKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLL 92
FKA VNFNGETFESP FCSTLR AEHAAAEVAL+ LSK+GPS LAA+VLDETG+YKNLL
Sbjct: 58 FKATVNFNGETFESPAFCSTLRLAEHAAAEVALNELSKRGPSSSLAAKVLDETGIYKNLL 117
Query: 93 QETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSA 152
QET+HRA V GEP
Sbjct: 118 QETAHRA----------------------------VPRVGEP------------------ 131
Query: 153 LKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNS----QREHRTIGV 208
SSS PP + +D+Q+Q I+AR LA+L +TN Q+E +
Sbjct: 132 ----------SSSSCPPDHD---DDDQEQIIVARTLASLN--QTNGGKTPQQKEKQQSSN 176
Query: 209 SASIRREVIPYGDARSLNSLQHQNWHCIPFY-PELSLYQTCPQERVFRQQENLLALSSLP 267
S RR P +A L H H P PE ++Y Q + +Q+ + + ++
Sbjct: 177 RPSSRRPSYPKSNASFYGRL-HLQKHAYPSVPPEQAMYHMWHQVQATQQKPHFPMVPTMG 235
Query: 268 SSS-PRPQIFPFIRSMFQPDHGYYFPSLVEEPVSLV---PEIGPFL--YFSNRVMPVPVR 321
S+ P P P + M+ P G + ++ + L+ PE P L YFS R
Sbjct: 236 STGFPPP---PTVLHMYPPPRGQFTMPSSQDGLGLIPCYPEASPVLPRYFSPYPASFVPR 292
Query: 322 NVSQVSIQEIEENPRMEEDWRKGDGGSDCWQNNCP-------SNVPRLSQSEIPNSLVSF 374
V++ +I E + D + + + P + V + E S +
Sbjct: 293 RPLPVNVHKIHEKRLVGADMVELPDAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPAS 352
Query: 375 NSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQTEQYNWFSPGFIDARFRPTTISKD 434
+S+ + + + S + EI LR ++++ P +R P + +
Sbjct: 353 EQESKSHTASSSATRSPSQQLESNQDIEIMGGLRLESKKPAEQPPESSPSRVNPVLLCET 412
Query: 435 GDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVPPSFAAPMTIRASATASTASLRP 494
G + + D + RNS +S + S P IR A P
Sbjct: 413 GQRHHYSSVRHGDPVH-----RNSPQISVATS-----------PSPIRRGDPAHINI--P 454
Query: 495 QSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSRHY------MAPAVHIRSVVPVC 548
Q S V PP R+ ++ R G R +PS Y +A +V IR+ VPVC
Sbjct: 455 QIS---VATPPECRSPSAQAPPR---FGTRMPVNLPSSLYQQRPPWLAASVTIRTTVPVC 508
Query: 549 SAPP 552
SA P
Sbjct: 509 SARP 512
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK+QLQE AQ+S + +P Y I++G H PRF+A+V NG +ES L+ AEH+A
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+ ALD L+ A TG+ KN+LQE + R G LP+Y +GP H VF+
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA-KSAFS 162
TVE+ GV + G AK+KK+A+ AA A A+K+ A K FS
Sbjct: 121 ATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIKELAGKECFS 163
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 90/155 (58%), Gaps = 20/155 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVA-LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A++A +DV YKNLLQE + + LP Y T SGP H P F
Sbjct: 64 AKIAGIDV-------------------AYKNLLQEIAQKESSLLPFYATATSGPSHAPTF 104
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
+ TVE AG F+GE AKTKK A+ +AA A+ ++K
Sbjct: 105 TSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 139
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+TFESP +C T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALDVLSKKG-PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
+VAL L ++ P++ L ++ YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVN----YKNLLQELVQKEGFPLPIYNTASDVSNYSAAFV 210
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSP 168
TVE+ GV+F G+P TKKQA+ NAA +A+ K A SS S +P
Sbjct: 211 STVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANP 258
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALDVLSKKGPSKVLAARVL-----DETGV-YKNLLQETSHRAGLKLPVYTTVRSGP 113
AA A D L + + A ET + YK+ LQ + + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
H P+F V + G +F E T K+A+ AA A +L ++A
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEA 165
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+TFESP +C T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALDVLSKKG-PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
+VAL L ++ P++ L ++ YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVN----YKNLLQELVQKEGFPLPIYNTASDVSNYSAAFV 210
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSP 168
TVE+ GV+F G+P TKKQA+ NAA +A+ K A SS S +P
Sbjct: 211 STVEIRGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANP 258
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALDVLSKKGPSKVLAARVL-----DETGV-YKNLLQETSHRAGLKLPVYTTVRSGP 113
AA A D L + + A ET + YK+ LQ + + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
H P+F V + G +F E T K+A+ AA A +L ++A
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEA 165
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY I G HAP FK+ V +G+TFESP +C T+++AE AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 EVALDVLSKKG-PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
+VAL L ++ P++ L ++ YKNLLQE + G LP+Y T + F
Sbjct: 155 KVALMSLPQEANPTQQLLLPSVN----YKNLLQELVQKEGFPLPIYNTASDVSNYSAAFV 210
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSP 168
TVE+ GV+F G+P TKKQA+ NAA +A+ K A SS S +P
Sbjct: 211 STVEIHGVTFHGKPGNTKKQAEMNAAKSAFEHFKNINHDAGSSGSANP 258
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
MYK++LQEL Q+ + P Y REGP HAP F+A V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALDVLSKKGPSKVLAARVL-----DETGV-YKNLLQETSHRAGLKLPVYTTVRSGP 113
AA A D L + + A ET + YK+ LQ + + G LP Y + G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 114 GHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
H P+F V + G +F E T K+A+ AA A +L ++A
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQEA 165
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 95/165 (57%), Gaps = 5/165 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YKNQLQE AQ+ LPSY I G AP FK+ V +G+TFESP +C T+++AE AAA
Sbjct: 94 YKNQLQEYAQKRGKLLPSYRPIHGGSLRAPLFKSEVTIDGQTFESPEYCRTMKEAETAAA 153
Query: 62 EVALDVLSKK-GPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
+VAL L ++ GP++ L + YKNLLQE + G LP Y T + F
Sbjct: 154 KVALMFLPQEAGPTQQLPLPSVS----YKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFI 209
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
TVE+ G +F GEP TKKQA+ NAA A+ K A S+ S
Sbjct: 210 STVEIQGATFRGEPGNTKKQAEMNAAKIAFQHFKDINHDAGSAGS 254
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHA 59
MYK++LQEL Q+ + P Y REGP H P F+A V NGE+F SP ++++A +
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGV-----YKNLLQETSHRAGLKLPVYTTVRSGPG 114
AA A + LS A YKN LQE + + G LP Y + G
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 115 HGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
P+F V + G +F E +T K+A+ AA A L ++A
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQEA 164
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 98/155 (63%), Gaps = 8/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++KNQLQ AQ+ F P YSC R GP HA RFK V NG+T+ES + TL +AE+AA
Sbjct: 135 LFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYESREYFPTLSKAENAA 194
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+ AL L G + DE+G YKNLLQ+ + R G LP Y T +SG H P F
Sbjct: 195 AKAALMSLLPNGVEE-------DESG-YKNLLQDMAQREGCGLPTYFTEKSGEAHAPTFI 246
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TVE+ GV+FTG+ A+ KKQA+ +AA A++A ++
Sbjct: 247 STVEIDGVNFTGKEARNKKQAEMSAAKIAYTARRR 281
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 48/178 (26%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK++LQ+L+Q+ + +P Y +EG +H+P F A V + F +P S+ ++A++AA
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 61 AEVALDVLSKK--------------------------GPSKVLAARVLD--------ETG 86
A++A + S P L + D E G
Sbjct: 61 AKLAHNYFSDHPRASSSSPLNVSADCSGGSAGENTRPSPGGNLELDLQDANRTPLSNEAG 120
Query: 87 --------------VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF 130
++KN LQ + + PVY+ R GP H F C V + G ++
Sbjct: 121 AVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTY 178
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 98/160 (61%), Gaps = 10/160 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++KNQLQ AQ+ F LP YSC R GP HA RFK V NG+T+ES + TL +AE AA
Sbjct: 4 LFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAELAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGV-YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A+ AL L G ++E G YK+LLQE + R G LP Y T +SG H P F
Sbjct: 64 AKAALMSLLSNG---------VEEDGFGYKSLLQELAQREGCGLPTYWTDKSGEAHVPTF 114
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
VE+ G FTG+ AKTKKQA+ +AA A++AL+++ S
Sbjct: 115 VSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTALQQRYSS 154
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 91/167 (54%), Gaps = 18/167 (10%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++AL L+ + P +A + LPVY T SGP H P F
Sbjct: 64 AKIALASLTPQSPEAKIA------------------QKENSMLPVYATATSGPSHSPTFI 105
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFS 167
TVE AG FTG+ AKTKK A+ +AA A+ ++K + SS S S
Sbjct: 106 STVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIKNGNSNQTSSPSLS 152
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK+QLQE AQ+ PSY ++EG H PRFK+ V NG +ES TLR AEHAA
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A+ ALD L +K KV+ + E+G+ KNLLQE + + G LP Y +VR G H VFS
Sbjct: 61 AKAALDFL-QKTQFKVVP---VHESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFS 116
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
TVE+AGVS++G AK+KK+A+ AA A A++
Sbjct: 117 STVEIAGVSYSGGCAKSKKEAEIKAARTALLAIQ 150
>gi|224130804|ref|XP_002328380.1| predicted protein [Populus trichocarpa]
gi|222838095|gb|EEE76460.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 167/360 (46%), Gaps = 68/360 (18%)
Query: 242 LSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDHGYYFPSLVEEPVSL 301
+++YQ QE +F+ Q LLAL +PS SP PQI P+++S+ D + P +EPV +
Sbjct: 1 MAIYQMWQQEELFQLQNRLLALQ-IPSVSPGPQILPYMQSILPSDSVLFGPLREQEPVPV 59
Query: 302 VPEIGPF----LYFSNRVMPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQNNCPS 357
P I LY ++ V+P P++ S V+I EI E K + C
Sbjct: 60 GPRITIATSRPLYLADHVVPDPIKGESTVTISEIHEE--------KPEESLQC------- 104
Query: 358 NVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQTEQYNWF 417
S S IP+ V N +E R ++ + ++ V E NQT ++ W
Sbjct: 105 -----STSVIPDPPVGGNFNAEPRSKDPVDMDDKQMKVELERKVENVQPGDNQTRKFEWA 159
Query: 418 SPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSR--PRNSTMVSSSGSVGGSVPPSF 475
S D+ +RP F+ QN S Q+ + PR ST S + PS
Sbjct: 160 SSSNTDSGYRPA-------DFQAQNKHSFHSSQATLQYPPRASTFRSCRPA------PSA 206
Query: 476 AAPMTIRA-----SATASTA---SLRPQS---------SNPLVRAPPPRRTAASFC-SSR 517
A P+ IR+ S+TA +A ++ P S NP APP RT S +R
Sbjct: 207 APPVMIRSVRPLPSSTAPSALNNNMGPPSVPKLQDLAAQNP---APPRMRTGGSHSYQAR 263
Query: 518 PWPEGMRNQGGMPSRHYMAPAVHIRSVVPVCSAPPSKKYPD-----PSREKRTEEQRGDI 572
P P+ M N GG+ R +MAPAV IRSVVPVCSAPP+++ P P RE + D+
Sbjct: 264 PLPQRM-NLGGVHPR-FMAPAVRIRSVVPVCSAPPARRMPTSGQVVPDRESKATAVPEDV 321
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P F + V N ++S S + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVF 119
AEVAL LSK ++ + ETG+ KNLLQE + + +P+Y + GPG G +F
Sbjct: 75 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 134
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
SCTVE+ G+ + G AKTKK+A+ AA A A++
Sbjct: 135 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ 169
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P F + V N ++S S + AE +A
Sbjct: 8 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 67
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVF 119
AEVAL LSK ++ + ETG+ KNLLQE + + +P+Y + GPG G +F
Sbjct: 68 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 127
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
SCTVE+ G+ + G AKTKK+A+ AA A A++
Sbjct: 128 SCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAIQ 162
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P FK+ V N ++S S + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVF 119
AEVAL L+K G K ++ + ETG+ KNLLQE + + +P+Y + PG F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
SCTVE+ G+ + G A+TKK+A+ AA A A++
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ+ P Y I+EGP H P FK+ V N ++S S + AE +A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVF 119
AEVAL L+K G K ++ + ETG+ KNLLQE + + +P+Y + PG F
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
SCTVE+ G+ + G A+TKK+A+ AA A A++
Sbjct: 135 SCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIR 169
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K+QLQE AQ++ P Y +EGP H P F++ V N ++S + AE +A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSG--PGHGPV 118
AEVAL L+K G + + ETG+ KNLLQE + + +P+Y + + PG P+
Sbjct: 76 AEVALMELAKTGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQSKKDDTPPGRAPL 135
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
+SCTV++ G+ + G AKTK++A+ AA A A++ A A
Sbjct: 136 YSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAIQTNASQA 177
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y I+EGP H P F++ V ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L+K G ++ ++ETG+ KNLLQE + + +P+Y + PG G V
Sbjct: 74 AAEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLV 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
F CTVE+ G+ + G KTKK+A+ AA A A++ S SS
Sbjct: 134 FKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSGSDKQSGSS 180
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y ++EGP H P FK+ V N T+ES P F S + AE +
Sbjct: 37 VFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSR-KAAEQS 95
Query: 60 AAEVALDVLSKKGP-SKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPV 118
AAEVAL ++ P ++ + + ETG+ KNLLQE + + +P Y + G P
Sbjct: 96 AAEVALMEIAMSAPVAETRSIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 154
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F CTVE+ G+ + G A+TKK+A+ AA A A++ Q++
Sbjct: 155 FICTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQSE 194
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y I+EGP H P F++ V ++S P F + + AE +
Sbjct: 8 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNR-KAAEQS 66
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L+K G ++ + ETG+ KNLLQE + + +P+Y + PG G V
Sbjct: 67 AAEVALVELAKAGQINESTSQPVHETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLV 126
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
F CTVE+ G+ + G AKTKK+A+ AA A A++
Sbjct: 127 FKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAIQ 162
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSS 164
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K A +++
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESKMALANN 179
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L K + + ETG+ KNLLQE + + +P+Y + PG V
Sbjct: 74 AAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
FSCTV++ G+ + G AKTKK+A+ AA A A++ A A
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASHA 175
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L K + + ETG+ KNLLQE + + +P+Y + PG V
Sbjct: 74 AAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
FSCTV++ G+ + G AKTKK+A+ AA A A++ A A
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQA 175
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L K + + ETG+ KNLLQE + + +P+Y + PG V
Sbjct: 74 AAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASV 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
FSCTV++ G+ + G AKTKK+A+ AA A A++ A A
Sbjct: 134 FSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQA 175
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y ++EGP H P FK+ V N +ES P F S + AE +
Sbjct: 761 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSR-KAAEQS 819
Query: 60 AAEVALDVLSKKGP-SKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPV 118
AAEVAL ++ P +++ + ETG+ KNLLQE + + +P Y + G P
Sbjct: 820 AAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 878
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F C+VE+ G+ + G A+TKK+A+ AA A A++ Q++
Sbjct: 879 FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQSEGG 920
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y ++EGP H P FK+ V N +ES P F S + AE +
Sbjct: 37 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSR-KAAEQS 95
Query: 60 AAEVALDVLSKKGP-SKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPV 118
AAEVAL ++ P +++ + ETG+ KNLLQE + + +P Y + G P
Sbjct: 96 AAEVALMEIAMSAPVTEIRNMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGVAP- 154
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F C+VE+ G+ + G A+TKK+A+ AA A A++ Q++
Sbjct: 155 FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAIQSQSEGG 196
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 16 VFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNR-KAAEQS 74
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
AAEVAL L+K ++ + ETG+ KNLLQE + + +P+Y ++ PG G +
Sbjct: 75 AAEVALMELAKCDEVNDSISQPVHETGLCKNLLQEYAQKMNYAIPLYLCQKNESPGRGTL 134
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157
F CTVE+ G+ + G AKTKK+A+ AA A A++ A
Sbjct: 135 FKCTVEIGGIHYIGASAKTKKEAEIKAARTALLAIQLSA 173
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK+ V N ++ S S + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL + K P+ V ETG+ KNLLQE + + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FI 152
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 197
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ ++ A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISSGRTALIAIQSESK 173
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK+ V N ++ S S + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL + K P+ V ETG+ KNLLQE + + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 197
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQR P Y I+EGP H P ++ V N ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL L+K + + E G+ KNLLQE + + +P+Y RS G P
Sbjct: 74 AAEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y ++EGP H P FK+AV +G +++S P F S + AE +
Sbjct: 13 VFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSR-KAAEQS 71
Query: 60 AAEVALDVLSKKGPSKVLAAR-VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPV 118
AAEVAL ++K A + ETG+ KNLLQE + + +P Y + R G P
Sbjct: 72 AAEVALMEIAKSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGVAP- 130
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
F TVE+ G+ + G A+TKK+A+ AA A A++ Q+ + + +S
Sbjct: 131 FISTVEIGGIQYIGAAARTKKEAEIKAARTALLAIQGQSDGSANGAS 177
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 78 AARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKT 137
AA V++ V+K+ LQE + +AGL P Y T++ GP H PVF V + GVS+ P
Sbjct: 4 AASVVENCYVFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFF 63
Query: 138 KKQAQKNAALAAWSALKKQAKS-AFSSSSFSPPSSESG 174
++A + + AA AL + AKS A +S+ P E+G
Sbjct: 64 SRKAAEQS--AAEVALMEIAKSLALPTSATIPAVQETG 99
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V NG + S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPV 118
AAEVAL L+K ++ + ETG+ KNLLQE + + +P+Y R G
Sbjct: 74 AAEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSS 163
F+CTVE+ G+ +TG +TKK A+ +A A A++ ++K+ ++
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSESKNNLAN 178
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL LSK + + E G+ KNLLQE + + +P+Y +S G P
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTKK+A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAIQSESK 173
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 77/155 (49%), Gaps = 39/155 (25%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++KNQLQ AQ+ F+LP YSC R GP HA RFK NG+T+ES + TL +AE
Sbjct: 176 LFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAEK-- 233
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
R G P Y T +SG H P F
Sbjct: 234 -------------------------------------REGCGFPTYCTEKSGEAHAPTFI 256
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TVE+ GVSFTG+ A+TKKQA+ +AA A++A ++
Sbjct: 257 STVEIDGVSFTGKEARTKKQAEMSAAKIAYTARRR 291
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK+ LQ + + + LP+Y ++G DH+P F A V N +F SP+ S+ ++A+ A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 61 AEVALDVLS 69
A++A D S
Sbjct: 61 AKLAYDHFS 69
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVEL-AGVSFTGEPAKTKKQAQKNA 145
+YK+ LQ H+ G +LP Y + G H P+FS TV + A + P+ + K+AQ +A
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 146 ALAAW 150
A A+
Sbjct: 61 AKLAY 65
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 8/167 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ +LPSY IR GP HAP F++ V +G TFESP T ++AE AAA
Sbjct: 114 YKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFRSTVTIDGRTFESPQDYHTTKEAEFAAA 173
Query: 62 EVALDVLSKKG-PSK---VLAARVLDETGV---YKNLLQETSHRAGLKLPVYTTVRSGPG 114
VAL LS++ PS+ V +A + G+ +K LQ + + G +LP Y + GP
Sbjct: 174 RVALMSLSQEANPSEQMLVGSASCISLPGIQINHKLQLQIYAQKRGKQLPKYRRTQEGPS 233
Query: 115 HGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P+F TV + G +F + +T K+++ AA A +L ++ S+
Sbjct: 234 HAPLFKSTVTIDGQTFESPQYCQTIKESENAAANLALMSLTQEGHSS 280
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPT---FCSTLRQAE 57
M+K QL +L Q+ + P Y+ EGP H RF+A V NGE + SP T ++A
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAKEAH 86
Query: 58 HAAAEVALDVLSKKGPSKVLAARVLDETGV-YKNLLQETSHRAGLKLPVYTTVRSGPGHG 116
+ AA+ A + LS + ET + YK+ LQ + + LP Y T+R+GP H
Sbjct: 87 NLAAKAAFERLS----ALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHA 142
Query: 117 PVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
P+F TV + G +F + T K+A+ AA A +L ++A
Sbjct: 143 PLFRSTVTIDGRTFESPQDYHTTKEAEFAAARVALMSLSQEA 184
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL LSK + + E G+ KNLLQE + + +P+Y +S G P
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTK++A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESK 173
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G ++S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGP-GHGPV 118
AAEVAL LSK + + E G+ KNLLQE + + +P+Y +S G P
Sbjct: 74 AAEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F+CTVE+ G+ +TG KTK++A+ +A A A++ ++K
Sbjct: 134 FTCTVEIGGIKYTGAATKTKREAEISAGRTALIAIQTESK 173
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 13/149 (8%)
Query: 7 QELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
Q A+++ + P ++ EGP H R+KA V +G++FESPT +T+++AE AAA
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA----- 167
Query: 67 VLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA 126
K + DE K+LLQE S R G P Y T + GP H P F TVE+
Sbjct: 168 --------KFVGMFQKDEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVE 219
Query: 127 GVSFTGEPAKTKKQAQKNAALAAWSALKK 155
G+ F G+ +K+K +A+++AA A+ LK+
Sbjct: 220 GIGFHGKASKSKNKAEEDAAKIAYITLKE 248
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHA 59
M+K++LQEL R ++LP YS +GP H P FK +V NG TF S ++ +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALD-----VLSKKGPS-------KVLAAR-----VLDETGVYKNLL--QETSHRAG 100
AA A + S P+ +V A + VL ++ V K+ Q + +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNAA 146
L PV+T GP H + V + G SF + T K+A++ AA
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA 167
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K+ LQEL++R F+ P+Y + GP H P F + V G F + +AE AA+
Sbjct: 182 KSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGIGFHGKA-SKSKNKAEEDAAK 240
Query: 63 VALDVLSKKG 72
+A L + G
Sbjct: 241 IAYITLKECG 250
>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
Length = 123
Score = 97.8 bits (242), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/125 (46%), Positives = 64/125 (51%), Gaps = 42/125 (33%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQL L SY C EGPDH PRF+AAV FN ETFE P+ C+TLRQAEHAA
Sbjct: 1 MYKNQL----------LTSYVCTPEGPDHTPRFRAAVTFNSETFEGPSGCTTLRQAEHAA 50
Query: 61 AEVALDVLSKKGPSKVLAARVL--------------------------------DETGVY 88
AEV L LS + PS LA +V DETG+Y
Sbjct: 51 AEVTLARLSLRAPSTSLATQVFVITTVIFLRVLCVLLLAAVDLDVEGETVHIAQDETGLY 110
Query: 89 KNLLQ 93
KNL Q
Sbjct: 111 KNLFQ 115
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 93/167 (55%), Gaps = 2/167 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQE QR LP Y + EG H P+F++ V +GE + S S ++AE
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A++AL +++K ++ + E V K++L E + + L++P Y TV+ G G P+F
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQG-GLFPIF 131
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSF 166
+ GV++ G+ +TKK+A++ AA AA +L + +S S F
Sbjct: 132 VSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKF 178
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVEL-AGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 196
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 72 GPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFT 131
P+ A ++ V+K+ LQE + + GL+ P Y T + GP H PVF TV + S+
Sbjct: 18 APNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYD 77
Query: 132 GEPA-KTKKQAQKNAALAAWSALKK 155
P +K A+++AA A + K
Sbjct: 78 SLPGFFNRKAAEQSAAEVALMEIVK 102
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 4/147 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN+LQE QRS LP Y + EG HAP+F++ V +G T+ SP S + AE
Sbjct: 22 MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +AL+ +SKK K ++ E V+ K++L E + + L+ P YTTV+ G PVF
Sbjct: 82 ARLALEFISKK--IKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPE-GLLPVF 138
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAA 146
++ GV++TG+ + KK+A++ AA
Sbjct: 139 VSSLVFNGVTYTGDAGRNKKEAEQLAA 165
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 82 LDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQ 140
L E ++KN LQE + R+ + LP+Y TV G H P F TV + G ++T +K
Sbjct: 17 LPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKA 76
Query: 141 AQKNAALAAWSALKKQAK 158
A+++ A A + K+ K
Sbjct: 77 AEQDVARLALEFISKKIK 94
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 17/178 (9%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K Q Q A ++ + P ++ EGP R+ A V +G++F+SPT T ++AE AA +
Sbjct: 147 KLQHQNYASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQ 206
Query: 63 VALDVLSKKG------------PSKVLAAR-VLDETGVYKNLLQETSHRAGLKLPVYTTV 109
+ +D+ + P L R + +ET K+LLQE + R +P Y +
Sbjct: 207 I-VDMFQARSALAFKPCQTFEKPRSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKST 265
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK---QAKSAFSSS 164
R+GP H P F TVE+ GV F G+ + +KK+A+ +AA A+ ALK +AFSSS
Sbjct: 266 RTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKALKDGGLHMYAAFSSS 323
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHA 59
MYK++LQE R ++LP YS I +GP H P FK +V NG TF S + ++A +
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 60 AAEVALDVLS------------KKGPSKVLAAR------------VLDETGVYKNL-LQE 94
AA AL S KV AA+ +L +T L Q
Sbjct: 93 AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 152
Query: 95 TSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
+ + L PV+T GP ++ TV + G SF + ++ + AAL +
Sbjct: 153 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQIVDMFQ 212
Query: 155 KQAKSAF 161
++ AF
Sbjct: 213 ARSALAF 219
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 76 VLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTG-E 133
V+ V + +YK+ LQE HR LP Y+++ GP H P F +V + G++FT +
Sbjct: 22 VITIVVGVKVKMYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSD 81
Query: 134 PAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKG 193
+ K+A AA+ A ++ SSS S P++E G+ ++ A + +
Sbjct: 82 IFHSSKEAHNQAAMKALLNF------SYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQF 135
Query: 194 PETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNW 233
P+ D LN LQHQN+
Sbjct: 136 PDI----------------------LSDTDRLNKLQHQNY 153
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G + S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPV 118
AAEVAL L+K ++ + ETG+ KNLLQE + + +P+Y + G
Sbjct: 74 AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSS 163
F+CTVE+ G+ +TG +TKK A+ +A A A++ K+ ++
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLAN 178
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K+ LQE + + L PVY V+ GP H +F TV L GV + P ++A + +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESG 174
A AL++ AKS+ S S P E+G
Sbjct: 75 --AEVALRELAKSSELSQCVSQPVHETG 100
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 74/156 (47%), Gaps = 46/156 (29%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ AQ+ LP YS GP H RFK+
Sbjct: 182 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSK------------------------ 217
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
D+ GVYKNLLQE + + G +LPVY+T +SG H P F
Sbjct: 218 ----------------------DDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFL 255
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
TVE+ G +F G+ AKTKK A+ NAA AA++ LK++
Sbjct: 256 STVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKER 291
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF-TGEPAKTKKQAQKNAAL 147
K LQE HR P Y+T + GP H P F TV + G+SF T PA++ K+AQ NAA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 148 AAWSAL 153
A L
Sbjct: 72 LAIQYL 77
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M K +LQEL R +N P YS ++GP H P F A V+ G +F + + ++A+ A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALDVLSKKGP 73
A +A+ L+ P
Sbjct: 70 AGLAIQYLTDPKP 82
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQE Q+S LP Y + EGP H PRF++ V +G + S + AE
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A +AL+ + K+ + +L +T K++L E + + + P Y TV+S PG PVF
Sbjct: 199 ANLALESILKRVKDE-GCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQS-PGLLPVFI 256
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
T+ GVS+TG+ + KK+A++ AA A +L
Sbjct: 257 STLVFDGVSYTGDAGRNKKEAEQLAARAVILSL 289
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 74 SKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGE 133
SK L + L + +YKN LQE + ++ L+LPVY T+ GP H P F TV + G + +
Sbjct: 126 SKKLVKKGLPDNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQ 185
Query: 134 PAKT---KKQAQKNAALAAWSALKKQAK 158
KT +K A+++ A A ++ K+ K
Sbjct: 186 --KTFLHRKAAEQDVANLALESILKRVK 211
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 15/124 (12%)
Query: 82 LDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQA 141
D+ GVYKNLLQE + + G +LPVY+T +SG H P F TVE+ G +F G+ AKTKK A
Sbjct: 233 FDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 292
Query: 142 QKNAALAAWSALKKQAKSAFSSSSFSPPSSE-------------SGTNDEQDQAIIARYL 188
+ NAA AA++ LK++ +S + S SP E SGT D Q Q II++
Sbjct: 293 EMNAAKAAYTHLKER-RSNLNHKSLSPSGQELRGVESSSFNSESSGTADLQ-QNIISKLT 350
Query: 189 ATLK 192
LK
Sbjct: 351 LVLK 354
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF-TGEPAKTKKQAQKNAAL 147
K LQE HR P Y+T + GP H P F TV + G+SF T PA++ K+AQ NAA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 148 AAWSAL 153
A L
Sbjct: 72 LAIQYL 77
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN LQE+A++ + LP YS + G H P F + V GETF T + AE A
Sbjct: 238 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQK-AKTKKLAEMNA 296
Query: 61 AEVALDVLSKK 71
A+ A L ++
Sbjct: 297 AKAAYTHLKER 307
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M K +LQEL R +N P YS ++GP H P F A V+ G +F + + ++A+ A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AEVALDVLSKKGP 73
A +A+ L+ P
Sbjct: 70 AGLAIQYLTDPKP 82
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKN+LQE +S N P Y I EG DH+P+F++ V + S + S + AEH A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHG-PV 118
A +AL+ + K+ + L+ ++++ + K+++ E + + ++ P Y T + G P+
Sbjct: 61 ARLALESILKRTRDEGLS--LVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPI 118
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G S+TG+PA+TKK+A+++AA AA ++ + S
Sbjct: 119 FITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSG 160
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 30/157 (19%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IR G AP FK+ V +G+TFESP +C T+++AE AA
Sbjct: 93 YKSQLQIYAQKRGKLLPSYRLIRVGSLGAPLFKSEVTIDGQTFESPEYCHTIKEAETVAA 152
Query: 62 EVALDVLSKKG-PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
+VAL L ++ P++ L GL + Y+ F
Sbjct: 153 KVALMSLPQEANPTQQLLV--------------------GLDVSNYSAG---------FV 183
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157
TVE+ GV+F G+ TKKQA+ NAA +A+ LK A
Sbjct: 184 STVEIQGVTFHGKRGNTKKQAEMNAAKSAFEHLKTDA 220
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFC-STLRQAEHA 59
MYK++LQEL Q+ + Y REGP HAP F A V NGE F S +L++A +
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAEVALDVL---SKKGPSKVLAARVLDETGV-YKNLLQETSHRAGLKLPVYTTVRSGPGH 115
A A D L + A ET + YK+ LQ + + G LP Y +R G
Sbjct: 61 TAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGSLG 120
Query: 116 GPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
P+F V + G +F E T K+A+ AA A +L ++A
Sbjct: 121 APLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSLPQEA 163
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 9/155 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+ K LQ A+++ + P ++ E +KA V + ++FESPTF +++++AE AA
Sbjct: 122 LSKKHLQNYARKNNLDPPVFTIKTERL----HYKATVVIDEKSFESPTFFNSIKEAEQAA 177
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++AL ++ P V + DE+ K+LL E + R G P YTT+ SG H +
Sbjct: 178 AKIAL----RELPISVDLFQK-DESCPSKSLLLELTQREGYSKPTYTTIESGSLHMRTYF 232
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TVE+ G+ F G+ +++KKQA +AA A+ ALK+
Sbjct: 233 STVEVEGLKFHGKASRSKKQADIDAAKIAYIALKE 267
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNA 145
++K LQ+ H+ LP YT GP H P F+ +V + GV+F A + K+AQ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 146 ALAAW----SALKKQAKSAFSSSSFSPPSSESGTNDE 178
A+ A+ S L + A FS P+ E G+ ++
Sbjct: 61 AMKAFRNFTSPLSEFAIRLIRRDGFSIPTDEYGSKEK 97
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+K +LQ+L + ++LP Y+ +GP H P F A+V+ NG TF S ++ ++A++ A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETG 86
A A + P A R++ G
Sbjct: 61 AMKAFRNFT--SPLSEFAIRLIRRDG 84
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+K +LQE Q++ F LP Y + EG DH PRFK V NG ++SP + + A++AA
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AE A+ L +G +L + KN+L++ + + + P Y + G H P F+
Sbjct: 61 AEAAVKKLVNQG---LLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFT 117
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK---QAKSAFSSSSFSP 168
VE+ G + G+PA +KK A AA A A+ QA+S ++ S P
Sbjct: 118 AIVEINGAFYAGDPANSKKDATNKAACKAIRAIDPHYFQAESIINNGSEHP 168
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 7/151 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ ++P Y IR GP HA FK V +G+TFESP T+++AE AAA
Sbjct: 89 YKSQLQIYAQKRRKDIPFYHSIRSGPPHATLFKTTVTIDGQTFESPQEYHTIKEAEFAAA 148
Query: 62 EVALDVLSKKG--PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
VAL L ++ P ++L +T + Q+ + + G L VY H +
Sbjct: 149 RVALMSLPQEANPPQQLLV-----QTISHNRARQDLAEKEGSPLDVYNATLDDSNHFSIS 203
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
VE G SF P TKKQ++ A A+
Sbjct: 204 KEKVETQGRSFQAGPGHTKKQSEMIATELAF 234
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 12/164 (7%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESP---TFCSTLRQAE 57
M+K++L EL + + P+Y+ EGP H P+F+A V NG F SP + +T ++A+
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 58 HAAAEVALDVLSKKGPSKVLAARVLDETGV---YKNLLQETSHRAGLKLPVYTTVRSGPG 114
AA+ A + L S + + G YK+ LQ + + +P Y ++RSGP
Sbjct: 61 SLAAKAAFEHL-----SSLPPPPPPPQPGTQVDYKSQLQIYAQKRRKDIPFYHSIRSGPP 115
Query: 115 HGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQA 157
H +F TV + G +F + T K+A+ AA A +L ++A
Sbjct: 116 HATLFKTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLPQEA 159
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+TF P + AAA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
L P + L YKN +QE + + G+ LPVY TV + + +
Sbjct: 96 AEVALDLLPPIPPQEYTIPSLS----YKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKS 151
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+V++ G F GEP +KKQA+ NAA A+ L
Sbjct: 152 SVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHL 183
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN L E Q++ +P Y I EG P++++ V + + SP R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A VA + +SKK +K A +L E + K++L E + + GL+ P+YTT + G F
Sbjct: 137 ARVAFEYISKK--TKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFF 193
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157
T+ GV +T + +TKK+A++ AA AA +L + A
Sbjct: 194 QSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDA 231
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN L E Q++ +P Y I EG P++++ V + + SP R AE A
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A VA + +SKK +K A +L E + K++L E + + GL+ P+YTT + G F
Sbjct: 137 ARVAFEYISKK--TKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFF 193
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157
T+ GV +T + +TKK+A++ AA AA +L + A
Sbjct: 194 QSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDA 231
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK +LQEL + ++LP YS + G DH P F A V NG +F S + + + A++ A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 61 AEVALDVLSKKG-PSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A++A D S P V + +YKNLLQ + + GL LP+Y+ R GP H +F
Sbjct: 61 AKLAFDHFSSVSLPPDV-------QQHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLF 113
Query: 120 SCTVELAGVSF 130
C V + G S+
Sbjct: 114 KCKVTIDGKSY 124
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YKN LQ AQ+ LP YSC R+GP HA FK V +G+++E F T+ +AEHAA
Sbjct: 81 LYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTIDGKSYECLDFFPTVSKAEHAA 140
Query: 61 AEVALDVLSKKG 72
A+ AL L+ G
Sbjct: 141 AKAALTSLAPDG 152
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 10/118 (8%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
++DE YKNLLQE + + G LP Y+TV G H P F+ TVE+ G FTG+ +TKKQ
Sbjct: 1 MIDEFA-YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQ 59
Query: 141 AQKNAALAAWSALK----KQAKSAF--SSSSFSPPSSESGTNDEQDQAIIARYLATLK 192
A+ NAA A+ ALK KQ+ + S++S P S SG + Q+++A L+ LK
Sbjct: 60 AEFNAAKVAYKALKQRNSKQSSTVLLPSNTSHQPVGSCSGNS---SQSLMASSLSNLK 114
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YKN LQELAQ+ + LPSYS + G H P F + V GE F T +QAE AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQ-TRTKKQAEFNAA 65
Query: 62 EVALDVLSKK 71
+VA L ++
Sbjct: 66 KVAYKALKQR 75
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 21/188 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F+ V G+ F S ++AE A
Sbjct: 47 MHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDA 106
Query: 61 AEVALDVLSKKGPSKVLAA-RVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGP- 117
A +A ++LS G + A ++D+ V+ K++L E + + P Y+ V P
Sbjct: 107 ARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYI---EKPL 163
Query: 118 -VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL--------------KKQAKSAFS 162
+F+ V G S+TGE A+ KK A++NAA A ++ KKQ +A
Sbjct: 164 TLFAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSILAKHNTCMVGIVRSKKQLITAVK 223
Query: 163 SSSFSPPS 170
SS SP +
Sbjct: 224 SSGSSPAT 231
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K QL AQ+ P Y I+EGP HAPRF A V +G+TF P + AAA
Sbjct: 81 FKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 140
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
L P + L YKN +QE + + G+ LPVY TV + + +
Sbjct: 141 AEVALDLLPPIPPQESTIPSLS----YKNFIQEIAQKEGILLPVYNTVPTNKEYSTAYKS 196
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+V++ F GEP +KKQA+ NAA A+ L
Sbjct: 197 SVQIKCEIFEGEPRTSKKQAEMNAAKIAYHHL 228
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK++L L + P + EGP H+P F A V N + FC+ + +
Sbjct: 1 MYKSELHALCSKKHCPKPEFVHTCEGPVHSPVFTATVTLNEK-----KFCAG--EGTPSK 53
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
EV S +++ + +K L + + G P+Y ++ GP H P F+
Sbjct: 54 KEVDNLAARAALLSLADSSKPFESKTDFKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFN 113
Query: 121 CTVELAGVSF 130
V + G +F
Sbjct: 114 AEVTIDGQTF 123
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 19/165 (11%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G + S P F +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFN------RK 68
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPV 118
AAE++ V ++ + ETG+ KNLLQE + + +P+Y + G
Sbjct: 69 AAELSQCV-----------SQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 117
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSS 163
F+CTVE+ G+ +TG +TKK A+ +A A A++ K+ ++
Sbjct: 118 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLAN 162
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%)
Query: 69 SKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGV 128
+++GPS + D++G YKN LQE + R L +PVY ++SG H P F VE+ G
Sbjct: 182 TREGPSHAPCFKATDDSGFYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGE 241
Query: 129 SFTGEPAKTKKQAQKNAALAAWSALKKQA 157
F G+ K+KK+A+ +A AA++ L ++A
Sbjct: 242 KFYGKAGKSKKEAELKSARAAYTVLMERA 270
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M K +LQE+ + + LP YS +++GPDH P FKA+V NG +F S C + + A + A
Sbjct: 1 MDKTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA 60
Query: 61 AEVAL 65
A++A
Sbjct: 61 AKMAF 65
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YKN LQELAQR ++P Y I+ G H P F + V GE F S ++AE +
Sbjct: 200 FYKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAGKSK-KEAELKS 258
Query: 61 AEVALDVLSKKG 72
A A VL ++
Sbjct: 259 ARAAYTVLMERA 270
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF-TGEPAKTKKQAQKNAAL 147
K LQE H+ LP Y+ ++ GP H P F +V + G+SF + K+ K A +A
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA-- 60
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYL--ATL-KGPETNNSQRE 202
AK AF + PP ++ + + ++ TL GPETN + +E
Sbjct: 61 ---------AKMAFLHFTSPPPPTKFSLSLSLTPLLSGSFMIPGTLADGPETNETSQE 109
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 27/149 (18%)
Query: 7 QELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
Q A+++ + P ++ EGP H R+KA V +G++FESPT +T+++AE AAA
Sbjct: 113 QNCARKNDLDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA----- 167
Query: 67 VLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA 126
K + DE K+LLQE S R G P Y T ++
Sbjct: 168 --------KFVGMFQKDEPCPSKSLLQELSEREGFSKPTYK--------------TTQIE 205
Query: 127 GVSFTGEPAKTKKQAQKNAALAAWSALKK 155
G+ F G+ +K+K +A+++AA A+ LK+
Sbjct: 206 GIGFHGKASKSKNKAEEDAAKIAYITLKE 234
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 21/167 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHA 59
M+K++LQEL R ++LP YS +GP H P FK +V NG TF S ++ +A++
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAEVALD-----VLSKKGPS-------KVLAAR-----VLDETGVYKNLL--QETSHRAG 100
AA A + S P+ +V A + VL ++ V K+ Q + +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNAA 146
L PV+T GP H + V + G SF + T K+A++ AA
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAA 167
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK+ V +GE F S TFC ++ AE A
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 97
Query: 61 AEVALDVLSKKGPSKVLAARV---LDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHG 116
A+VA D L ++ ++ V +D+ V+ K++L E + + P Y+ ++
Sbjct: 98 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVT 157
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P S +V AG ++TG A+ KK A++ AA AA +L
Sbjct: 158 PYVS-SVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK+ V +GE F S TFC ++ AE A
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 95
Query: 61 AEVALDVLSKKGPSKVLAARV---LDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHG 116
A+VA D L ++ ++ V +D+ V+ K++L E + + P Y+ ++
Sbjct: 96 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVT 155
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P S +V AG ++TG A+ KK A++ AA AA +L
Sbjct: 156 PYVS-SVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 191
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YKN+LQELAQR+ LP Y ++G H P F++ V G+ F S ++ AE AA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 62 EVALDVLSKK------GPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVR-SGP 113
VA ++L K + +L ++D+ ++ K++L E + + P Y+ R G
Sbjct: 90 RVAYEILVAKIMDADADVTDILG--LIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGV 147
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+F +V G ++TGE A +KK A++ AA AA ++
Sbjct: 148 SPISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSI 187
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN L + A +S P + EG AP ++++V +G F S + AE
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A AL+ L+KK K A ++ E + K +L E + + ++LP Y +V P F
Sbjct: 87 ARFALEYLTKK--VKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVI-PYF 143
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
CT++L G S+TG+ A+ KK A + AA AA ++
Sbjct: 144 VCTLDLNGTSYTGDAARRKKDAVELAARAAILSI 177
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+K +LQEL R + LP YS +++G DH PRF+A V +G+ F SPT + +QA++ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AEVALDVLS 69
A++A D S
Sbjct: 61 AKLAFDFFS 69
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNA 145
++K LQE HR KLP Y+ V+ G H P F TV + G F P+K+ KQAQ +A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 146 ALAAWS 151
A A+
Sbjct: 61 AKLAFD 66
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F V + F S S ++AE A
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 61 AEVALDVLSKKGPSKVLAA-RVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGH-GP 117
A VA ++L+ S V A ++D+ V+ K++L E + + LP Y+ V
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 120
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+F+ V G ++ GE A KK A++NAA
Sbjct: 121 LFAAIVVFDGNAYHGESAPNKKDAEQNAA 149
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
M+KN+LQ A+R+ P Y EG H P+F V + F S S ++AE A
Sbjct: 58 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117
Query: 61 AEVALDVLSKKGPSKVLAA-RVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGH-GP 117
A VA ++L+ S V A ++D+ V+ K++L E + + LP Y+ V
Sbjct: 118 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 177
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+F+ V G ++ GE A KK A++NAA
Sbjct: 178 LFAAIVVFDGNAYHGESAPNKKDAEQNAA 206
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 84 ETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQK 143
ET K+LLQE + R +P Y + R+GP H P F TVE+ GV F G+ + +KK+A+
Sbjct: 1 ETCASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEY 60
Query: 144 NAALAAWSALKK---QAKSAFSSS 164
+AA A+ ALK +AFSSS
Sbjct: 61 DAAKIAYKALKDGGLHMYAAFSSS 84
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K+ LQEL QR ++P+Y R GP H P F + V G F S+ ++AE+ AA+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKA-SSSKKEAEYDAAK 64
Query: 63 VALDVLSKKG 72
+A L G
Sbjct: 65 IAYKALKDGG 74
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 65 LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVE 124
+ L K+G +L + ETG+ KNLLQE + + +P Y +S G P F CTVE
Sbjct: 456 IGALCKQG---LLGPAAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVE 511
Query: 125 LAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 512 IGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 552
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPS 74
AAEVAL + K P+
Sbjct: 92 AAEVALMEIVKSIPA 106
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 72 GPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFT 131
P+ A ++ V+K+ LQE + +AGL+ P Y T + GP H PVF TV + S+
Sbjct: 18 APNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYD 77
Query: 132 GEPA-KTKKQAQKNAALAAWSALKK 155
P +K A+++AA A + K
Sbjct: 78 SLPGFFNRKAAEQSAAEVALMEIVK 102
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 65 LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVE 124
+ L K+G +L + ETG+ KNLLQE + + +P Y +S G P F CTVE
Sbjct: 456 IGALCKQG---LLGPATVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVE 511
Query: 125 LAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 512 IGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 552
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPS 74
AAEVAL + K P+
Sbjct: 92 AAEVALMEIVKSIPA 106
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNA 145
V+K+ LQE + + GL+ P Y T + GP H PVF TV + S+ P +K A+++A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 146 ALAAWSALKK 155
A A + K
Sbjct: 93 AEVALMEIVK 102
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 65 LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVE 124
+ L K+G +L + ETG+ KNLLQE + + +P Y +S G P F CTVE
Sbjct: 1685 IGALCKQG---LLGPATVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVE 1740
Query: 125 LAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 1741 IGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 1781
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 42/232 (18%)
Query: 67 VLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA 126
VL + +LA V + V+K+ LQE + + GL+ P Y T + GP H PVF TV +
Sbjct: 1249 VLGRNSNEDILAVGV-ENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVIN 1307
Query: 127 GVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIAR 186
S+ P ++A + + AA AL + KS ++++ P E+G + Q + R
Sbjct: 1308 NTSYDSLPGFFNRKAAEQS--AAEVALMEIVKSIPANANI-PAVQETGLCNTGSQQLNLR 1364
Query: 187 -----------YLATLKGPETNNSQREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHC 235
LATL HR + +A++ + AR+LNSL
Sbjct: 1365 EMHREADHHHHLLATLA---------RHRRLAATATLFSSTLR--TARALNSL------- 1406
Query: 236 IPFYPELSLYQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDH 287
L C R +L L++ PS SP F + S H
Sbjct: 1407 --------LAAICSSPAFLRFAPKVLLLAA-PSVSPDATTFHILTSTLCQAH 1449
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 1268 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 1326
Query: 60 AAEVALDVLSKKGPS 74
AAEVAL + K P+
Sbjct: 1327 AAEVALMEIVKSIPA 1341
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 84 ETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQK 143
ETG+ KNLLQE + + +P Y + G P F CTVE+ G+ + G A+TKK A+
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA A A++ Q++ + + ++
Sbjct: 526 KAARTALLAIQGQSEGSANGAT 547
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK+ V N ++ S S + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY----KNLLQETSHR 98
AEVAL + K P+ V ETG+ + L Q HR
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCNIGSQQLNQREMHR 135
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K+ LQE + +AGL+ P Y T + GP H PVF TV + S+ P + ++A + +
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS- 93
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESG 174
AA AL + KS ++++ P E+G
Sbjct: 94 -AAEVALMEIVKSIPANANI-PAVQETG 119
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 84 ETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQK 143
ETG+ KNLLQE + + +P Y + G P F CTVE+ G+ + G A+TKK A+
Sbjct: 467 ETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEI 525
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA A A++ Q++ + + ++
Sbjct: 526 KAARTALLAIQGQSEGSANGAT 547
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK+ V N ++ S S + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVY----KNLLQETSHR 98
AEVAL + K P+ V ETG+ + L Q HR
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCNIGSQQLNQREMHR 135
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K+ LQE + +AGL+ P Y T + GP H PVF TV + S+ P + ++A + +
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQS- 93
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESG 174
AA AL + KS ++++ P E+G
Sbjct: 94 -AAEVALMEIVKSIPANANI-PAVQETG 119
>gi|156373860|ref|XP_001629528.1| predicted protein [Nematostella vectensis]
gi|156216530|gb|EDO37465.1| predicted protein [Nematostella vectensis]
Length = 949
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 78/180 (43%), Gaps = 36/180 (20%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YKN LQE AQ S LPSY+ F A VNF G ++S ST + AE AA
Sbjct: 141 YKNILQEFAQGSAKLLPSYTVDTTNSG----FIAEVNFEGVRYKSKIAHSTKKAAEQNAA 196
Query: 62 EVALDVLS--KKGPSKVLAAR----VL-------DETGV---------------YKNLLQ 93
E AL L + PS+ + + VL D TG YK+ LQ
Sbjct: 197 ESALQALGLVRDSPSETVVSEKFESVLKNTPAKNDFTGCSKDQLYLSSPAINISYKSYLQ 256
Query: 94 ETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
E + G + P Y T G V V+ G S TG+PA TKK +++ AA A L
Sbjct: 257 EHVVQRGWRGPSYMTTYHQGGAQTV----VQFCGKSLTGKPASTKKLSEQLAAREALVNL 312
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 96 SHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+ R G LP Y T +SG H P F TVE+ GV FTG+ A+TKKQA+ +AA A++A ++
Sbjct: 2 AQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAYTARRR 61
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 9 LAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVL 68
A+R+ P Y EG H P+F V + F S S ++AE AA VA ++L
Sbjct: 77 FAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEIL 136
Query: 69 SKKGPSKVLAA-RVLDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGH-GPVFSCTVEL 125
+ S V A ++D+ V+ K++L E + + LP Y+ V +F+ V
Sbjct: 137 TTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVF 196
Query: 126 AGVSFTGEPAKTKKQAQKNAA 146
G ++ GE A KK A++NAA
Sbjct: 197 DGNAYHGESAPNKKDAEQNAA 217
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + G PVYT + +GP H F TV++ G+ +KKQA+ AAL+
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWSAL 153
AW+AL
Sbjct: 223 AWTAL 227
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 55.1 bits (131), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 104 PVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
PVY+T +SG H P+FS VE+ G FTG+ AK+KK A+ +AA A+ L ++ +
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFLDQKKR 95
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 80 RVLDETGV--YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAK 136
+VL+ G YK+LLQE + + PVY V+ SGP H VF TV L G S+ K
Sbjct: 169 KVLENKGHKDYKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQGK 228
Query: 137 TKKQAQKNAALAAWSAL 153
+KK+A++NAA AA+ L
Sbjct: 229 SKKEAEQNAAKAAYEEL 245
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNA 145
+Y N LQE + LP Y T GP H P+FS TV + +SFT EPA T K +Q+
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 146 ALAAW 150
A+ A+
Sbjct: 61 AMVAF 65
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MY N+LQEL Q++ + LP Y EGP H P F + V +F SP STL+ ++
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 61 AEVALD 66
A VA
Sbjct: 61 AMVAFH 66
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y +GP H FS TV +AG F TKK+A++ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQKAAE 214
Query: 148 AAWSALKKQAK 158
AW AL ++ K
Sbjct: 215 TAWRALSEELK 225
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL + +P Y GPDH F A V G F + +T ++AE AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGN-GTTKKEAEQKAA 213
Query: 62 EVALDVLSKK 71
E A LS++
Sbjct: 214 ETAWRALSEE 223
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 82 LDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
+ ETG+ KNLLQE + + +P+Y + G F+CTVE+ G+ +TG +TKK
Sbjct: 3 MHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKD 62
Query: 141 AQKNAALAAWSALK 154
A+ +A A A++
Sbjct: 63 AEISAGRTALLAIQ 76
>gi|147779552|emb|CAN61162.1| hypothetical protein VITISV_001392 [Vitis vinifera]
Length = 458
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/27 (85%), Positives = 24/27 (88%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPD 28
YKNQLQELAQRSCFNLPSY+CIR D
Sbjct: 99 YKNQLQELAQRSCFNLPSYTCIRRPKD 125
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 79 ARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTK 138
++V+D G NL R L++PV+ T R+GP H P FSCTV + +F G TK
Sbjct: 77 SQVIDPKGNLINLCT----RNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTK 132
Query: 139 KQAQKNAALAAWSAL 153
K A+K A+ A L
Sbjct: 133 KLAEKEASKQAVEGL 147
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETF---ESPTFCSTLRQAEHA 59
K L L R+ +P + R GPDH P+F V +TF + PT ++A
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTKKLAEKEASKQ 142
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETG 86
A E + S S ++ +R+++E+
Sbjct: 143 AVEGLFEAGSGIVRSPLVNSRLVEESA 169
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 84 ETGVYKNLLQETSHRAGLKLPVYTTVR--SGPGHGPVFSCTVELAGVSFTGEPAKTKKQA 141
ETG+ KNLLQE + + +P Y + SGP F C+VE+ G+ + G A+TKK A
Sbjct: 89 ETGLCKNLLQEYAQKMNYAIPSYICTKQASGP-----FICSVEIGGILYIGAAARTKKGA 143
Query: 142 QKNAALAAWSALKKQAK 158
+ AA A A++ Q++
Sbjct: 144 EIKAARTALLAIQGQSE 160
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y V +GP H F+ V + G S TKK+A++ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGDGTTKKEAEQKAAE 229
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAII 184
+AW AL ++ +S PP++ D A++
Sbjct: 230 SAWRALNEELRS-------HPPATAGDGADAPADAVV 259
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL + +P Y + GPDH F A V G + +T ++AE AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSL-GEGDGTTKKEAEQKAA 228
Query: 62 EVALDVLSKK 71
E A L+++
Sbjct: 229 ESAWRALNEE 238
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G +F ++KK+A++ AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQKAAS 233
Query: 148 AAWSALKKQAKS 159
AWSAL + A+S
Sbjct: 234 TAWSALSEAAQS 245
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +PSY GPDH F A V G+ F S ++AE AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSK-KEAEQKAA 232
Query: 62 EVALDVLSKKGPSKVL 77
A LS+ S VL
Sbjct: 233 STAWSALSEAAQSVVL 248
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPS 74
AAEVAL + K P+
Sbjct: 92 AAEVALMEIVKSIPA 106
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 27/223 (12%)
Query: 72 GPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFT 131
P+ A ++ V+K+ LQE + +AGL+ P Y T + GP H PVF TV + S+
Sbjct: 18 APNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYD 77
Query: 132 GEPA-KTKKQAQKNAALAAWSALKKQ--AKSAFSSSSFSPPSSESGTNDEQDQAIIARYL 188
P +K A+++AA A + K A + + + + E+G + Q + R +
Sbjct: 78 SLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVAHNSTQQETGLCNTGSQQLNLREM 137
Query: 189 ATLKGPETNNSQREHRTIGVSASIRREVIPYGD----ARSLNSLQHQNWHCIPFYPELSL 244
E ++ R T+ + + AR+LNSL L
Sbjct: 138 HR----EADHHHRLLATLARHCRLAAAATFFSSTLRTARALNSL---------------L 178
Query: 245 YQTCPQERVFRQQENLLALSSLPSSSPRPQIFPFIRSMFQPDH 287
C R +L L++ PS SP F + S H
Sbjct: 179 AAICSSPAFLRFAPKVLLLAA-PSVSPDATTFHILISTLCQAH 220
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPR-FKAAVNFNGETFESPTFCSTLRQAEHAA 60
+KN+LQE Q+ +P Y I PD A K+AV NGE FES +++E A
Sbjct: 50 FKNKLQEYCQQKKIAIPKYELI---PDPANNDKKSAVIVNGERFESVGAYPKKKESEMDA 106
Query: 61 AEVALDVL----SKKGPSKVLAARVLDETGVYKNL----------------LQETSHRAG 100
A VAL L ++K P K A + + T V KN L E R
Sbjct: 107 ACVALKALQTAEAQKAP-KYAAEQPVAITAVAKNCKPEKEKESTEENMIGQLNEVCQRNS 165
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
+ P Y G FSC V+ V E + KK A+K A AA + L + +S+
Sbjct: 166 VPAPQYNERGDKSGE---FSCDVKFKMVVVLNENFENKKCAEKAVAKAALTKLGIEKESS 222
Query: 161 FSSSSFSPPSSESG 174
S + + +G
Sbjct: 223 ESKNELQAYAQRNG 236
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQEL QR L Y ++E GP H+ F + V+ NGE + T S ++AE A
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSK-KEAEQHA 230
Query: 61 AEVALDVLSKK 71
AE+AL L K
Sbjct: 231 AEIALKNLKNK 241
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+ LQE R G+ L Y ++ GP H F V L G K+KK+A+++AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 147 LAAWSALKKQ 156
A LK +
Sbjct: 232 EIALKNLKNK 241
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 235
Query: 148 AAWSALKKQA-KSAFSSSSFSPPSSES 173
+AW A++ A + A + + PSS++
Sbjct: 236 SAWRAIRAAADERAKEEAEATAPSSDA 262
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 234
Query: 62 EVA 64
E A
Sbjct: 235 ESA 237
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K+ LQE + + L PVY V+ GP H +F TV L GV + P ++A + +
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS- 76
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESG 174
AA AL++ AKS+ S S P E+G
Sbjct: 77 -AAEVALRELAKSSELSQCVSQPVHETG 103
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G + S P F + + AE +
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 76
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETG 86
AAEVAL L+K ++ + ETG
Sbjct: 77 AAEVALRELAKSSELSQCVSQPVHETG 103
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWSALKKQA-KSAFSSSSFSPPSSES 173
+AW A++ A + A + + PSS++
Sbjct: 231 SAWRAIRAAADERAKEEAEATAPSSDA 257
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 229
Query: 62 EVA 64
E A
Sbjct: 230 ESA 232
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAWSALKKQA-KSAFSSSSFSPPSSES 173
+AW A++ A + A + + PSS++
Sbjct: 231 SAWRAIRAAADERAKEEAEATAPSSDA 257
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 229
Query: 62 EVA 64
E A
Sbjct: 230 ESA 232
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G +PVY +GP H F+ TV +AG F +TKK+A++ AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQKAAS 197
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTND 177
+AW L + S S S+ T D
Sbjct: 198 SAWQTLTDGQSGSASVDSSDGGSAVGSTAD 227
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y SGP H F TV + GV++ ++KK+A++ AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQRAAE 239
Query: 148 AAWSALKK 155
A W A+K+
Sbjct: 240 ATWHAIKE 247
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A V G T+ S S ++AE AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSK-KEAEQRAA 238
Query: 62 E 62
E
Sbjct: 239 E 239
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y SGP H F+ V +AGV + G ++KKQA++ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 148 AAWSALKKQAKS 159
AAW L +++++
Sbjct: 227 AAWRMLTERSEA 238
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K +LQE AQ+ P Y I+EGP H P F++ V N ++S P F + + AE +
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNR-KAAEQS 73
Query: 60 AAEVALDVLSK 70
A EVAL L+K
Sbjct: 74 AVEVALMELAK 84
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K LQE + + GL P+Y T++ GP H P F TV + + + P ++A + +A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLAT--LKGPETNNSQRE 202
+ AL + AK + S P +E+G + + ++ +L L+ P T ++ E
Sbjct: 75 VEV--ALMELAKCDEVNDCISQPVAEAGCSSHVQTSAVSGFLTNPLLESPATFPAKEE 130
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALKKQA 157
+AW A++ A
Sbjct: 230 SAWRAIRAAA 239
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVA---LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHR 98
+T E+ L Q AAAE+ D L +K S L A LD +K LQE +
Sbjct: 136 DTLEAVIGAVYLDQGLDAAAELVHRLFDPLIEK--SAGLGAG-LD----WKTSLQELTAT 188
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
GL +P Y +GP H F+ + GVS+ ++KK+A++ AA +AW A++ A
Sbjct: 189 EGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAWRAIRAAAD 248
Query: 159 SAFSSSSFSPPSSE 172
A + +PP+ E
Sbjct: 249 EAAERAVDAPPAGE 262
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 178 WKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 236
Query: 62 EVA 64
E A
Sbjct: 237 ESA 239
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 238
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSE----------SGTNDEQDQA 182
+AW ++ A + ++ S P +E SG +D Q+ A
Sbjct: 239 SAWREIRAAADARAAAESGKSPEAEAADGPAESDGSGADDGQESA 283
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 237
Query: 62 EVA 64
E A
Sbjct: 238 ESA 240
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ Y ++EGP H P FK+ V N +ES P F S + AE +
Sbjct: 32 VFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSR-KAAEQS 90
Query: 60 AAEVAL 65
AAEVAL
Sbjct: 91 AAEVAL 96
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALKKQA 157
+AW A++ A
Sbjct: 230 SAWRAIRAAA 239
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y SGP H F+ +AG ++KK+A++ AA
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQKAAE 241
Query: 148 AAWSALKKQ 156
+AW A+K Q
Sbjct: 242 SAWRAIKAQ 250
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 243
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 244 SAWRSIK 250
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 242
Query: 62 EVA 64
E A
Sbjct: 243 ESA 245
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK++LQ+L+Q+ + +P+ +EG +H+P F A V + F +P S+ ++A++AA
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 61 AEVA 64
A+ A
Sbjct: 61 AKQA 64
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 230 SAWRSIK 236
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 233
Query: 62 EVA 64
E A
Sbjct: 234 ESA 236
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 233
Query: 62 EVA 64
E A
Sbjct: 234 ESA 236
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALKKQA 157
+AW +++ A
Sbjct: 230 SAWRSIRAAA 239
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 233
Query: 62 EVA 64
E A
Sbjct: 234 ESA 236
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 13/108 (12%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK++LQ+ QR + +P+Y I EG HA +F++ V G T + + AE
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 61 AEVALDVLSKKGP----SKVLAARVLDETGV----YKN-----LLQET 95
A++AL+ ++K S VL + + ET YKN LL+ET
Sbjct: 103 AKIALEYFTEKIKGDVWSFVLEVKKIPETFDSPINYKNSFISPLLEET 150
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 77 LAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEP-- 134
L L T VYK+ LQ+ R G +P Y ++ G H F V + G++ G+
Sbjct: 33 LITSFLFVTKVYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTY 92
Query: 135 AKTKKQAQKNAALA 148
A+ K Q+ A +A
Sbjct: 93 ARRKDAEQEIAKIA 106
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAAL 147
K LQE + LP Y T GP H P+FS TV + +SFT +PA T K +Q+ AA+
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 148 AAW 150
A+
Sbjct: 93 VAF 95
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K +LQEL Q++ + LP Y EGP H P F + V +F SP STL+ ++ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 63 VALD 66
VA
Sbjct: 93 VAFH 96
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSALKKQA 157
+AW +++ A
Sbjct: 241 SAWRSIRAAA 250
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 239
Query: 62 EVA 64
E A
Sbjct: 240 ESA 242
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWSALKKQA 157
+AW +++ A
Sbjct: 245 SAWRSIRAAA 254
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 243
Query: 62 EVA 64
E A
Sbjct: 244 ESA 246
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALKKQA 157
+AW +++ A
Sbjct: 234 SAWRSIRAAA 243
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW ++K
Sbjct: 230 SAWLSIK 236
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G + +TKK+A++ AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQKAAS 233
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTND 177
AAW+AL + +A + +SG+ D
Sbjct: 234 AAWNALTE--GTAAETGDAGASDQQSGSAD 261
>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K QLQELAQ P Y + E GPDH+ F+ GE T S + AE AA
Sbjct: 175 FKTQLQELAQSRVRATPRYRVVGEHGPDHSKTFEVETELRGEVVGRGTGRSK-KDAEQAA 233
Query: 61 AEVALDVLSKK 71
A++ LD+L ++
Sbjct: 234 AKIGLDLLLRR 244
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSAL 153
+AW A+
Sbjct: 241 SAWRAI 246
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 239
Query: 62 EVA 64
E A
Sbjct: 240 ESA 242
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSALKKQAK 158
+AW L +QA+
Sbjct: 228 SAWRELTEQAE 238
>gi|417515465|gb|JAA53561.1| adenosine deaminase, RNA-specific [Sus scrofa]
Length = 1145
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FN+ S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 458 QFASQTCEFNMIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 512
Query: 67 VL-------------------SKKGPSKVLAARVLDETGVY----KN---LLQETSHRAG 100
VL S+K K ++ + KN L E H+ G
Sbjct: 513 VLLEEARAQDGGRSEDAYFSSSEKESQKTAESQTTTPSATSFLSGKNPVTTLLECVHKLG 572
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
R GP H P F V + +F A +KK A++ AA A AL ++A S+
Sbjct: 573 SSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQLAAEEAMKALHREATSS 632
Query: 161 FSSSSFSPPSSESGTNDEQDQAI---------IARYLAT 190
SS + P S+ S + D + + + RYL T
Sbjct: 633 LSSDN-QPGSTNSESFDNLESMMPNKVRRVGELVRYLNT 670
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
REGP H P+F+ V TF + + S + A+ AAE A+ L ++ S + +
Sbjct: 582 REGPAHDPKFQYCVAMGTHTFPTASAPSK-KAAKQLAAEEAMKALHREATSSLSSDNQPG 640
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 641 STNSESFDNLESMMPNKVRRVGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 700
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 701 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 744
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 236
Query: 148 AAWSALKKQA 157
+AW ++ A
Sbjct: 237 SAWREIRAAA 246
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 235
Query: 62 EVA 64
E A
Sbjct: 236 ESA 238
>gi|311254196|ref|XP_003125793.1| PREDICTED: double-stranded RNA-specific adenosine deaminase,
partial [Sus scrofa]
Length = 1171
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FN+ S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 484 QFASQTCEFNMIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 538
Query: 67 VL-------------------SKKGPSKVLAARVLDETGVY----KN---LLQETSHRAG 100
VL S+K K ++ + KN L E H+ G
Sbjct: 539 VLLEEARAQDGGRSEDAYFSSSEKESQKTAESQTTTPSATSFLSGKNPVTTLLECVHKLG 598
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
R GP H P F V + +F A +KK A++ AA A AL ++A S+
Sbjct: 599 SSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQLAAEEAMKALHREATSS 658
Query: 161 FSSSSFSPPSSESGTNDEQDQAI---------IARYLAT 190
SS + P S+ S + D + + + RYL T
Sbjct: 659 LSSDN-QPGSTNSESFDNLESMMPNKVRRVGELVRYLNT 696
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 28/164 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
REGP H P+F+ V TF + + S + A+ AAE A+ L ++ S + +
Sbjct: 608 REGPAHDPKFQYCVAMGTHTFPTASAPSK-KAAKQLAAEEAMKALHREATSSLSSDNQPG 666
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 667 STNSESFDNLESMMPNKVRRVGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 726
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 727 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 770
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 12 RSC--FNLPSYSCIREG-PDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVL 68
++C F++ SY +G +H K V +TFE+ C+ + ++ E D+L
Sbjct: 94 KACEKFDMSSYLNFGKGEKEHGGHLKKHVK--ADTFEAV--CAAIYL--DSSYEKLFDIL 147
Query: 69 SKKGPSKVLAARVLDETGV---YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVE 124
K + L ++++ + YK LQE + K+ Y V+ GP H F+ V+
Sbjct: 148 VKNYKEEALV--IINDDSIFNDYKTKLQEYHNAKDKKILKYELVKEEGPEHAKTFTMAVK 205
Query: 125 LAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
L K KKQA+++AA AA++ +KK
Sbjct: 206 LGNRILATGVGKNKKQAEQDAAKAAYNKIKK 236
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 242
Query: 148 AAWSAL 153
+AW A+
Sbjct: 243 SAWRAI 248
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 241
Query: 62 EVA 64
E A
Sbjct: 242 ESA 244
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALKKQA 157
+AW ++ A
Sbjct: 234 SAWREIRAAA 243
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVA---LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHR 98
+T E+ L Q AAAE+ D L +K S L A LD +K LQE +
Sbjct: 96 DTLEAVIGAVYLDQGLDAAAELVHRLFDPLIEK--SSNLGAG-LD----WKTSLQELTAT 148
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
GL +P Y +GP H F+ + GV + ++KK+A++ AA +AW A+
Sbjct: 149 EGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQAAESAWRAI 203
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G + + T S ++AE AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSK-KEAEQQAA 196
Query: 62 EVA 64
E A
Sbjct: 197 ESA 199
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSAL 153
+AW A+
Sbjct: 230 SAWRAI 235
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK+ LQ + Q+ + LP+Y ++G DH+P F A V N +F SP+ S+ ++A+ A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 61 AEVALDVLS 69
A++A D S
Sbjct: 61 AKLAYDHFS 69
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 49.3 bits (116), Expect = 0.006, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKN 144
G+ KNLLQE + + +P+Y + G F+CTVE+ G+ +TG +TKK A+ +
Sbjct: 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEIS 63
Query: 145 AALAAWSALK 154
A A A++
Sbjct: 64 AGRTALLAIQ 73
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW +++
Sbjct: 234 SAWRSIR 240
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL P Y GP H VF+ TV + G + + KK A+ AA
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 148 AAWSALKKQA 157
AW +L+ +A
Sbjct: 236 NAWVSLRDEA 245
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G + S P F + + AE +
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 62
Query: 60 AAEVALDVLSK 70
AAEVAL L+K
Sbjct: 63 AAEVALRELAK 73
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNA 145
V+K+ LQE + + L PVY V+ GP H +F TV L GV + P +K A+++A
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 146 ALAAWSALKK 155
A A L K
Sbjct: 64 AEVALRELAK 73
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW ++
Sbjct: 234 SAWRGIR 240
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + +L+ R
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMLSDDQVR 695
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 696 RIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAQKNAALAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE + K PVY +R SGP H F V + G F KK+A++NAA
Sbjct: 181 YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNIFGPASGANKKEAEQNAA 240
Query: 147 LAAWSAL 153
AA+ AL
Sbjct: 241 CAAYEAL 247
>gi|393214931|gb|EJD00423.1| hypothetical protein FOMMEDRAFT_169889 [Fomitiporia mediterranea
MF3/22]
Length = 172
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 25 EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDE 84
EG H P++ + + +GE + + + C T R A+ AA + +L KG V +
Sbjct: 50 EGEAHVPQWTSICSIDGEEYGTGSAC-TRRSADKEAAYQTMRMLEDKG---VPLPSTRNY 105
Query: 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKN 144
++ + ++E + + ++ GP H P + C V L GV G TKK A ++
Sbjct: 106 YPIFMDYIREKNLAGRI---MFEPFWRGPAHKPTWRCIVSLDGVEIAGGSGPTKKAAMED 162
Query: 145 AALAA 149
A++ A
Sbjct: 163 ASINA 167
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSALK 154
+AW ++
Sbjct: 234 SAWRGIR 240
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y SGP H F+ V +AG + G ++KKQA++ AA
Sbjct: 167 WKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAEQRAAA 226
Query: 148 AAWSALKKQAKS 159
AAW L +A++
Sbjct: 227 AAWRTLTDRAEA 238
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y GP H F+ TV +AG +TKK+A++ AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTGRTKKEAEQKAAG 273
Query: 148 AAWSAL 153
AAW L
Sbjct: 274 AAWRHL 279
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y +GPDH F A V GE S T T ++AE AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGT-GRTKKEAEQKAA 272
Query: 62 EVA 64
A
Sbjct: 273 GAA 275
>gi|332298046|ref|YP_004439968.1| ribonuclease 3 [Treponema brennaborense DSM 12168]
gi|332181149|gb|AEE16837.1| Ribonuclease 3 [Treponema brennaborense DSM 12168]
Length = 256
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE + + PVY V R+GP H F +V L V++ K KK+A+++AA
Sbjct: 185 YKTLLQEFYQKKYKECPVYELVKRTGPDHDRTFWVSVHLHSVTYGPASGKNKKEAEQSAA 244
Query: 147 LAAWSALK 154
AW A++
Sbjct: 245 RLAWEAVE 252
>gi|294461945|gb|ADE76528.1| unknown [Picea sitchensis]
Length = 325
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 25/93 (26%)
Query: 472 PPSFAAPMTIRASATASTASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPS 531
P S A P+TIR S P+ APP RR+ + F S+ + +PS
Sbjct: 237 PSSMAGPVTIRTSI-------------PVCSAPPLRRSHSDFLSN--------DTNLVPS 275
Query: 532 RHYMAPAVHIRSVVPVCSAPPSKKY----PDPS 560
APAV IRSV+PVCS+PP ++ PDPS
Sbjct: 276 PLQTAPAVQIRSVIPVCSSPPLRRTLPQNPDPS 308
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
+AW +++
Sbjct: 230 SAWRSIR 236
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 228
Query: 62 EVA 64
E A
Sbjct: 229 ESA 231
>gi|54291827|gb|AAV32195.1| unknown protein [Oryza sativa Japonica Group]
Length = 447
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 103/437 (23%), Positives = 172/437 (39%), Gaps = 69/437 (15%)
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNS----QRE 202
+AAWS LK+ + SSS PP + +D+Q+Q I+AR LA+L +TN Q+E
Sbjct: 1 MAAWSELKQLPRVGEPSSSSCPPDHD---DDDQEQIIVARTLASLN--QTNGGKTPQQKE 55
Query: 203 HRTIGVSASIRREVIPYGDARSLNSLQHQNWHCIP-FYPELSLYQTCPQERVFRQQENLL 261
+ S RR P +A L H H P PE ++Y Q + +Q+ +
Sbjct: 56 KQQSSNRPSSRRPSYPKSNASFYGRL-HLQKHAYPSVPPEQAMYHMWHQVQATQQKPHFP 114
Query: 262 ALSSLPSSS-PRPQIFPFIRSMFQPDHGYYFPSLVEEPVSLVP---EIGPFL--YFSNRV 315
+ ++ S+ P P P + M+ P G + ++ + L+P E P L YFS
Sbjct: 115 MVPTMGSTGFPPP---PTVLHMYPPPRGQFTMPSSQDGLGLIPCYPEASPVLPRYFSPYP 171
Query: 316 MPVPVRNVSQVSIQEIEENPRMEEDWRKGDGGSDCWQNNCP-------SNVPRLSQSEIP 368
R V++ +I E + D + + + P + V + E
Sbjct: 172 ASFVPRRPLPVNVHKIHEKRLVGADMVELPDAAVFSRYTAPDFSGTSENAVQDNKKEEYT 231
Query: 369 NSLVSFNSQSEQRMQEGLQGKGEEKSVSSAPNAEISNQLRNQTEQYNWFSPGFIDARFRP 428
S + +S+ + + + S + EI LR ++++ P +R P
Sbjct: 232 ESSPASEQESKSHTASSSATRSPSQQLESNQDIEIMGGLRLESKKPAEQPPESSPSRVNP 291
Query: 429 TTISKDGDKFRLQNTVSLDYLQSDSRPRNSTMVSSSGSVGGSVPPSFAAPMTIRASATAS 488
+ + G + + D + RNS +S + S P IR A
Sbjct: 292 VLLCETGQRHHYSSVRHGDPVH-----RNSPQISVATS-----------PSPIRRGDPAH 335
Query: 489 ------TASLRPQSSNPLVRAPPPRRTAASFCSSRPWPEGMRNQGGMPSRHY------MA 536
+ + P+ +P +APP F G R +PS Y +A
Sbjct: 336 INIPQISVATPPECRSPRAQAPP------RF--------GTRMPVNLPSSLYQQRPPWLA 381
Query: 537 PAVHIRSVVPVCSAPPS 553
+V IR+ +PVCSA P+
Sbjct: 382 ASVTIRTTIPVCSARPN 398
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
KN LQE Q++ LP+Y DHA +F V G + S + + AE AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNS-LWMDNKKDAEKHAAT 66
Query: 63 VALDVLSKKGPSKVLA 78
VAL LSK G +++A
Sbjct: 67 VALVELSKGGHKRLMA 82
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQE + L LP Y + H F C V++ G + KK A+K+AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSLWMDNKKDAEKHAATV 67
Query: 149 AWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNSQREHRTIGV 208
A L K + PP + S ++D Q A++ + + TL N + +R G+
Sbjct: 68 ALVELSKGGHKRLMA---PPPRNLSPSHDNQ-LAVVTKNMDTLN---INLNHGHNRNYGL 120
Query: 209 SASIRREVIPYGDARSLNSLQHQNWHCIPFY 239
EV P D + + ++ I FY
Sbjct: 121 ------EVDPIYDIKLNQTTGLFDYGKIEFY 145
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY + SGP H F VE+ GV++ K+KK A+++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKSKKIAEQHAA 235
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR Y + E GPDHA F V NG T+E+ + S + AE A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYRLLSESGPDHAKTFHIVVEINGVTYEAGSGKSK-KIAEQHA 234
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 235 AQLTLEKL 242
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y SGP H F TV +AG ++ ++KK+A++ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAE 223
Query: 148 AAWSALKKQAKSA 160
+AW A++ + A
Sbjct: 224 SAWKAIRAATEKA 236
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A V G+T+ S S ++AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSK-KEAEQQAA 222
Query: 62 EVA 64
E A
Sbjct: 223 ESA 225
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVA---LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHR 98
+T E+ L Q AA E+ D L +K S L A LD +K LQE +
Sbjct: 96 DTLEAVIGAVYLDQGLDAAGELVHRLFDPLIEK--SSSLGAG-LD----WKTSLQELTAT 148
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
GL +P Y +GP H F+ + GVS+ ++KK+A++ AA +AW
Sbjct: 149 EGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAESAW 200
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 196
Query: 62 EVA 64
E A
Sbjct: 197 ESA 199
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA-GVSFTGEPAKTKKQAQKNAAL 147
K LQE++ R GL PVY SGP H F V + V TGE +KKQA+ AAL
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGE-GSSKKQAEMTAAL 226
Query: 148 AAWSALKKQ 156
AW+ L+ +
Sbjct: 227 EAWTRLEAR 235
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY + SGP H F VE+ GV++ K+KK A+++AA
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKSKKIAEQHAA 235
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR Y + E GPDHA F V NG T+E+ + S + AE A
Sbjct: 176 YKTLLQEYVQRDGDKHTVYRLLSESGPDHAKTFHMVVEINGVTYEAGSGKSK-KIAEQHA 234
Query: 61 AEVALDVLSKK 71
A++ L+ L K
Sbjct: 235 AQLTLEKLMAK 245
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y SGP H F+ TV +AG + TKK+A++ AA
Sbjct: 170 WKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQKAAE 229
Query: 148 AAWSALKKQAKSAFSSS 164
AW AL ++ + +S
Sbjct: 230 TAWRALSEELGTGDDAS 246
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q+ +PSY+ +R+ GP+H F V+ NG+ F P + +QAE A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVF-GPASGANKKQAEQMA 234
Query: 61 AEVALDVLSK 70
A++A D L K
Sbjct: 235 AKLAYDQLVK 244
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + K+P YT VR +GP H F V++ G F KKQA++ AA
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPASGANKKQAEQMAA 235
Query: 147 LAAWSALKK 155
A+ L K
Sbjct: 236 KLAYDQLVK 244
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 226
Query: 148 AAW 150
+AW
Sbjct: 227 SAW 229
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 225
Query: 62 EVA 64
E A
Sbjct: 226 ESA 228
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y SGP H F TV +AG S+ ++KK+A++ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 148 AAWSALKKQAK 158
+AW A+K +++
Sbjct: 224 SAWKAIKARSE 234
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A V GE++ S ++AE AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSK-KEAEQQAA 222
Query: 62 EVA 64
E A
Sbjct: 223 ESA 225
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 227
Query: 148 AAWSAL 153
+AW ++
Sbjct: 228 SAWRSI 233
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 226
Query: 62 EVA 64
E A
Sbjct: 227 ESA 229
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAWSAL 153
+AW ++
Sbjct: 234 SAWRSI 239
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY + SGP H F VE+ GV++ K+KK A+++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|440683448|ref|YP_007158243.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
gi|428680567|gb|AFZ59333.1| Ribonuclease 3 [Anabaena cylindrica PCC 7122]
Length = 395
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 43 TFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLK 102
TFE+ L A E+ + + G K+ L+ K LLQ+ + + G
Sbjct: 281 TFEAIIGAYYLDSGIQAVQEIVYPLFASVGEDKIPENISLENLENAKGLLQQYAQKNGFD 340
Query: 103 LPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
+P YTT++ +G H F+ VE+ G K KK A+K AA A L+
Sbjct: 341 IPEYTTIQETGTDHNKEFTVQVEIGGQICGQGKGKRKKDAEKQAAANALEKLR 393
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 240
Query: 148 AAWSALK 154
+AW +++
Sbjct: 241 SAWRSIR 247
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 239
Query: 62 EVA 64
E A
Sbjct: 240 ESA 242
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY + SGP H F VE+ GV++ K+KK A+++AA
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHDKTFHMEVEINGVTYEAGSGKSKKIAEQHAA 235
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y SGP H F TV +AG S+ ++KK+A++ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQAAE 223
Query: 148 AAWSALKKQAK 158
+AW A++ +++
Sbjct: 224 SAWKAIRARSE 234
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A V GE++ S ++AE AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSK-KEAEQQAA 222
Query: 62 EVA 64
E A
Sbjct: 223 ESA 225
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q P Y I EGPDH F AV N E+ S S+ ++AE A
Sbjct: 167 YKTMLQEVIQDMGNFRPEYEVIDEEGPDHNKTFIVAVKMNEESLGSGQ-GSSKKEAEQEA 225
Query: 61 AEVALDVLSK 70
A+VALD L K
Sbjct: 226 AKVALDKLDK 235
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR + Y ++E GP H F + V+ NGE T S ++AE A
Sbjct: 175 FKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEELGVGTGKSK-KEAEQHA 233
Query: 61 AEVALDVLSKK 71
A++AL VL K
Sbjct: 234 AQMALGVLKAK 244
>gi|348507385|ref|XP_003441236.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 497
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
Y +L E A + + +GP H F +G+ + S T ++A+ AA
Sbjct: 6 YVGKLNEYAHKWHSGVSYEEVGSDGPPHDKVFNLRAVIDGKAYPSGE-GKTKKEAKQNAA 64
Query: 62 EVALDVLSKKGPSKVLAAR----------VL---DETGVYKNLLQETSH--RAGLKLPVY 106
+ AL+ LS+ G + +R VL D + N + +H + + Y
Sbjct: 65 KKALESLSQLGHQDSVESRNNAAEASVQVVLSSKDTSFTETNFIGLVNHYCQKTKRSHSY 124
Query: 107 TTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
V R GP H P+F +++ + K+ K+A++NAA AWSAL++Q+ S
Sbjct: 125 DEVGRDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQEQS----DWDS 180
Query: 166 FSPPSSESGTNDEQDQAIIARYLATLKGPE 195
+++S N+ + ++ +R+L+ E
Sbjct: 181 KDADNNDSIENNTRQTSVQSRFLSDFNSIE 210
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE S G P Y +GP H F+ +AG S +TKK+A++ AA
Sbjct: 172 WKTSLQELSAEGGYGPPHYQITSTGPDHNKEFTAVAVVAGESLGQGTGRTKKEAEQKAAA 231
Query: 148 AAWSALKKQAKSA 160
AW AL ++A S+
Sbjct: 232 LAWQALTERASSS 244
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL+ + P Y GPDH F A GE+ T T ++AE AA
Sbjct: 172 WKTSLQELSAEGGYGPPHYQITSTGPDHNKEFTAVAVVAGESLGQGT-GRTKKEAEQKAA 230
Query: 62 EVALDVLSKKGPS 74
+A L+++ S
Sbjct: 231 ALAWQALTERASS 243
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q + P Y I GPDH F+ AV +GET S S + A+ A
Sbjct: 155 YKTALQELTQATHGVTPDYEMIGSSGPDHRKEFEVAVKLDGETIASAKGRSK-KAAQQKA 213
Query: 61 AEVALDVLSKK 71
AE+AL L K+
Sbjct: 214 AEIALQKLRKE 224
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 74 SKVLAARVLDET----------GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCT 122
++ + R+LDET YK LQE + P Y + SGP H F
Sbjct: 131 ARSIVVRLLDETYPRIDLDTLCKDYKTALQELTQATHGVTPDYEMIGSSGPDHRKEFEVA 190
Query: 123 VELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
V+L G + ++KK AQ+ AA A L+K+
Sbjct: 191 VKLDGETIASAKGRSKKAAQQKAAEIALQKLRKE 224
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y +GP H F+ TV +AG TKK+A++ AA
Sbjct: 155 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQKAAE 214
Query: 148 AAWSALKKQAKS 159
AW +L + ++
Sbjct: 215 TAWRSLSAEVEA 226
>gi|257126255|ref|YP_003164369.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
gi|257050194|gb|ACV39378.1| ribonuclease III [Leptotrichia buccalis C-1013-b]
Length = 232
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 41 GETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAG 100
G+ FE+ + A VAL L K+ ++ TG YK +LQE
Sbjct: 121 GDAFEALIGAIFKDSDYYTAKNVALKFL----LGKINKLEEIEGTGDYKTILQEFVQGKY 176
Query: 101 LKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
K+P Y +R+ GP H VF V + K+KK+A+K+AA A LKK
Sbjct: 177 KKMPEYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSKKEAEKHAAKEALEKLKK 232
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q +P Y +R +GPDH F+ V +N + + T S ++AE A
Sbjct: 164 YKTILQEFVQGKYKKMPEYKLLRTKGPDHNKVFEICVRWNDKIYGIGTGKSK-KEAEKHA 222
Query: 61 AEVALDVLSK 70
A+ AL+ L K
Sbjct: 223 AKEALEKLKK 232
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 636 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMTSDDQVR 694
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 695 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 754
Query: 136 KTKKQAQKNAALAAWSALKKQAKSA 160
+KKQ ++ AA AA L + + A
Sbjct: 755 HSKKQGKQEAADAALRVLIGENEKA 779
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA-GVSFTGEPAKTKKQAQKNAAL 147
K LQE++ R GL P Y SGP H F V + V TGE +KKQA+ AAL
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGE-GSSKKQAEMTAAL 226
Query: 148 AAWSALKKQ 156
AW+ L+ +
Sbjct: 227 EAWTRLEAR 235
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 230
Query: 148 AAW 150
+AW
Sbjct: 231 SAW 233
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y EGPDH F AA G ++ + T S ++AE AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 229
Query: 62 EVA 64
E A
Sbjct: 230 ESA 232
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMTSDDQVR 695
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAQKNAALAAWSALKKQAKSA 160
+KKQ ++ AA AA L + + A
Sbjct: 756 HSKKQGKQEAADAALRVLIGENEKA 780
>gi|281414105|ref|ZP_06245847.1| RNAse III [Micrococcus luteus NCTC 2665]
Length = 130
Score = 46.6 bits (109), Expect = 0.038, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
+L E+ +K ++ E + R GL Y GP H P + T+ + + A +KKQ
Sbjct: 49 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQ 108
Query: 141 AQKNAALAAWSALKKQAKSA 160
A+++AA A+W AL+ +A
Sbjct: 109 AERDAAAASWPALEADLPAA 128
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQVR 748
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 749 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 808
Query: 136 KTKKQAQKNAALAAWSALKKQAKSA 160
+KKQ ++ AA AA L + + A
Sbjct: 809 HSKKQGKQEAADAALRVLIGENEKA 833
>gi|168058998|ref|XP_001781492.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667033|gb|EDQ53672.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1100
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LLQ RAG K PVY R+ G ++ ++E+ G FTG+PA +KK A+KN +
Sbjct: 1029 KGLLQTLLLRAGKKPPVY---RTRMVKGNLYQSSIEVKGRGFTGDPASSKKVAEKNVSAM 1085
Query: 149 AWSALKKQAK 158
A L +K
Sbjct: 1086 ALEWLTGLSK 1095
>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
Length = 338
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE R GL+ PVY +GP H +F+ V + S +TKK+A+ AA
Sbjct: 261 WKTSLQELCARRGLRPPVYEVTEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAG 320
Query: 148 AAWSAL 153
AW +
Sbjct: 321 HAWGVI 326
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETF 44
+YKNQLQ Q++ +LP YS EGP HA RFK V +G
Sbjct: 119 LYKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDGTNL 162
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAQKNAALAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 347
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE R GL+ PVY +GP H +F+ V + S +TKK+A+ AA
Sbjct: 270 WKTSLQELCARRGLRPPVYEVAEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMKAAG 329
Query: 148 AAWSAL 153
AW +
Sbjct: 330 HAWGVI 335
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY+ + SGP H F V + G+++ K+KK A+++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR YS I E GPDHA F V+ +G T+E+ T S + AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSK-KIAEQHA 235
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 236 AQLTLERL 243
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAQKNAALAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|194665306|ref|XP_581374.4| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|297472608|ref|XP_002686059.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Bos
taurus]
gi|296489763|tpg|DAA31876.1| TPA: RNA adenosine deaminase-like [Bos taurus]
Length = 1149
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FN+ S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 462 QFASQTCEFNMIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 516
Query: 67 VLSKKGPSKVL---------------------------AARVLDETGVYKNLLQETSHRA 99
+L ++ +K A L LL E H+
Sbjct: 517 ILLEEAKAKDSGRSEESYHYSSEKESEKTAESQTATPSATSFLSGKNPVTTLL-ECVHKL 575
Query: 100 GLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
G R GP H P F V + +F A +KK A++ AA A AL+ +A S
Sbjct: 576 GSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALQGEATS 635
Query: 160 AFSSSSFSPPSSESGTNDEQDQAI---------IARYLAT 190
+ +SS P S+ + D + + + RYL T
Sbjct: 636 S-TSSEDQPGSTNTEAFDNLESVMPNKVRRISELVRYLNT 674
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 61/166 (36%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
REGP H P+F+ V TF + + S + AA E
Sbjct: 586 REGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALQGEATSSTSSEDQPGS 645
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
A D L P+KV R + E Y N L E + G +SGP
Sbjct: 646 TNTEAFDNLESVMPNKV---RRISELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 702
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 703 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGEDEKA 748
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEASNSMASDNQVR 695
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 696 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 755
Query: 136 KTKKQAQKNAALAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 756 HSKKQGKQEAADAALRVL 773
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY+ + SGP H F V + G+++ K+KK A+++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR YS I E GPDHA F V+ +G T+E+ T S + AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSK-KIAEQHA 235
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 236 AQLTLERL 243
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQ+ AQR C N P+Y + E GPDH+ FK + + G+ +++ + ++AE A
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQA-AWGRNKKEAEQRA 255
Query: 61 AEVAL 65
A AL
Sbjct: 256 ANNAL 260
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGL 101
+ FES L E AA + + + GP LAA + G YK+LLQ+ + R
Sbjct: 155 DVFESLIAAIYLDGGEQAARQFINNYI---GPEVELAA-AGELGGNYKSLLQQFAQRECG 210
Query: 102 KLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157
P Y + GP H F + + G + + KK+A++ AA A + +K +A
Sbjct: 211 NTPTYHLLDEKGPDHSKCFKISASVGGKKYQAAWGRNKKEAEQRAANNALAEIKGEA 267
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE R G K VY+ + SGP H F V + G+++ K+KK A+++AA
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQHAA 236
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR YS I E GPDHA F V+ +G T+E+ T S + AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSK-KIAEQHA 235
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 236 AQLTLERL 243
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSAL 153
+AW L
Sbjct: 228 SAWRTL 233
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y SGP H F V + ++ ++KK+A++ AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQAAE 229
Query: 148 AAWSALK 154
AW AL+
Sbjct: 230 TAWKALR 236
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL + +P Y GPDHA F+A V +T+ + ++AE AA
Sbjct: 170 WKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTY-GHGIGRSKKEAEQQAA 228
Query: 62 EVALDVLSKKGPSKV 76
E A L P +
Sbjct: 229 ETAWKALRAAHPDSI 243
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE S G P Y +GP H F+ T +AG S +TKK+A++NAA
Sbjct: 164 WKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVGRTKKEAEQNAAA 223
Query: 148 AAWSAL 153
AW L
Sbjct: 224 IAWREL 229
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKN 144
K +LQ RAG +P Y T SG SC V + G F GEPA++KKQA+KN
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSG---SQFISCVV-VRGKKFIGEPAESKKQAEKN 1117
>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
gi|123074286|sp|Q1D5X9.1|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 88 YKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK LLQE +H LKL P Y V SGP H VF + L +F ++KK+A+++A
Sbjct: 173 YKTLLQEMAHER-LKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSA 231
Query: 146 ALAAWSALKKQA 157
A A L++ A
Sbjct: 232 AQATLEKLREDA 243
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK +LQE + G K VYT + SGP H +F V + G ++ K+KK+A++NAA
Sbjct: 176 YKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEVRIEGKAYGSGTGKSKKEAEQNAA 235
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V L F G ++KK+A++ A
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAE 215
Query: 148 AAWSALKKQAKSA 160
AW L + + A
Sbjct: 216 IAWRTLADELEDA 228
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|449489816|ref|XP_002188254.2| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Taeniopygia guttata]
Length = 1169
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 34/180 (18%)
Query: 6 LQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA 64
L E Q+S N+ + + +EGP H PRF V + F + ++ + A+ AAEVA
Sbjct: 578 LMEYGQKSG-NIIEFQLLSQEGPPHDPRFSYCVKMGDQIFPA-VVGNSKKGAKQMAAEVA 635
Query: 65 LDVLSKKG--------------------------PSKVLAARVLDETGVYKNL-----LQ 93
+ +LS + SKV+ + + E Y N+ L
Sbjct: 636 VKILSGESVPHVLHEQPVVEPQSDQSMHNIATPDESKVVKMKGVGELIKYLNVNPVSGLL 695
Query: 94 ETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
E + G +SGP H P F ++ G F A KKQ ++ AA AA L
Sbjct: 696 EYARSNGFAAEFKLIDQSGPPHDPKFVYQAKVGGRWFPAVTAHNKKQGKQEAADAALRVL 755
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKN 144
K +LQ RAG +P Y T SG SC V + G F GEPA++KKQA+KN
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSG---SQFISCVV-VRGKKFIGEPAESKKQAEKN 1000
>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
Length = 223
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q + +P+Y I GPDH F+ A+ NG+ S S+ +QA+ A
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI-SRAVGSSKKQAQQLA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKIKK 223
>gi|331698524|ref|YP_004334763.1| ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length = 238
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + A L +P Y GP H F+ T + G +TKK+A++ AA
Sbjct: 161 WKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGDGRTKKEAEQKAAA 220
Query: 148 AAWSALKKQAKSAFSSS 164
AW L +A + ++
Sbjct: 221 LAWRTLSAEADGSVGTA 237
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y +GP H FS V + G TKK+A++ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQKAAE 229
Query: 148 AAWSALKKQAK 158
AW L ++ K
Sbjct: 230 FAWRELTEELK 240
>gi|189043297|sp|A8Z6F6.1|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
Length = 223
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q + +P+Y I GPDH F+ A+ NG+ S S+ +QA+ A
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI-SRAVGSSKKQAQQLA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKIKK 223
>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
Length = 223
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q + +P+Y I GPDH F+ A+ NG+ S S+ +QA+ A
Sbjct: 155 YKTALQEVTQANLGVIPTYELISSFGPDHKKEFEIALLLNGKEI-SRAVGSSKKQAQQLA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKIKK 223
>gi|291241541|ref|XP_002740673.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 618
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLD 83
R GP HAP F V +G+ FE CS ++QA+H A+ AL + S V +D
Sbjct: 90 RSGPPHAPVFVMGVKVDGQYFEGKG-CS-IKQAKHIVAKQALKFVQ----SDVEIGGTVD 143
Query: 84 ETGVYKNLLQETSHRAGLK-------LPVY--------TTVRSGPGHGPVFSCTVELAGV 128
+ L TS L L Y T SG GH +++ V++
Sbjct: 144 AESGNGDQLSTTSESETLSQSDPTLLLAAYNPGPIIYDTLSESGNGHEKMYTMAVKVGDA 203
Query: 129 SFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
F G A K Q + AA AA S L Q++
Sbjct: 204 VFQGTGAN-KHQGKMAAARAALSQLNVQSE 232
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAW 150
+AW
Sbjct: 198 SAW 200
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 196
Query: 62 EVA 64
E A
Sbjct: 197 ESA 199
>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
gi|7531192|sp|O69469.1|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
Length = 238
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 58 HAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGP 117
H EVA V+ + + + AA L +K LQE + G+ +P Y +GP H
Sbjct: 132 HHGIEVARQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTSTGPDHDK 191
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F+ V + + +KK+A++ AA AAW AL
Sbjct: 192 EFTAVVVVMDTEYGSGIGHSKKEAEQKAASAAWKAL 227
>gi|338535028|ref|YP_004668362.1| ribonuclease III [Myxococcus fulvus HW-1]
gi|337261124|gb|AEI67284.1| ribonuclease III [Myxococcus fulvus HW-1]
Length = 257
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 88 YKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK LLQE +H LKL P Y V SGP H VF + L +F ++KK+A+++A
Sbjct: 170 YKTLLQELAHER-LKLQPRYRVVSESGPEHSKVFEVELVLGETAFARASGRSKKEAEQSA 228
Query: 146 ALAAWSALKKQA 157
A A L++ A
Sbjct: 229 AQATLEKLRQDA 240
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y +GP H FS TV + G TKK+A++ AA
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKAAE 229
Query: 148 AAWSALKKQ 156
AW L +
Sbjct: 230 TAWRQLSAE 238
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|356569838|ref|XP_003553102.1| PREDICTED: caltractin-like [Glycine max]
Length = 265
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 109 VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+++G H P F TVE+ GV F G+ ++KKQ+++NA A+ ALK+
Sbjct: 1 MQAGSPHMPTFFSTVEVEGVEFHGKGGRSKKQSEENATKIAYIALKE 47
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+LLQE R PVY + RSGP H +F V ++ +++ + KK A++ AA
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAA 215
Query: 147 LAAWSALKKQA 157
A+ AL+K +
Sbjct: 216 KMAYEALEKDS 226
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL QR N P Y + R GPDHA F V + + P + AE A
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAY-GPGTGRNKKTAEQEA 214
Query: 61 AEVALDVLSK 70
A++A + L K
Sbjct: 215 AKMAYEALEK 224
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 45.4 bits (106), Expect = 0.083, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFC-STLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK+ V +GE F S TFC ++ AE A
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 97
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYK 89
A+VA D L ++ ++ D+T V++
Sbjct: 98 AKVAYDTLLERKETET------DDTDVFE 120
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|405374858|ref|ZP_11029152.1| Ribonuclease III [Chondromyces apiculatus DSM 436]
gi|397086526|gb|EJJ17629.1| Ribonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 260
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 79 ARVLDETGV------YKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSF 130
A +LDE YK LLQE +H LKL P Y V SGP H VF + L +F
Sbjct: 158 AELLDEVSSGQGRLDYKTLLQEMAHER-LKLQPRYRVVSESGPEHSKVFEVELMLGDTAF 216
Query: 131 TGEPAKTKKQAQKNAALAAWSALKKQA 157
++KK+A+++AA A L++ A
Sbjct: 217 ARASGRSKKEAEQSAAQATLDKLQEGA 243
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + R + P Y+ +GP H F+ TV + V TG +KKQA+ AAL
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRVGDVVTTG-TGSSKKQAEMAAALT 221
Query: 149 AWSALKKQA 157
AW L +A
Sbjct: 222 AWRELDARA 230
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K LQE+A R P+YS GPDH RF A V G+ + T S+ +QAE AAA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRV-GDVVTTGT-GSSKKQAEMAAAL 220
Query: 63 VA 64
A
Sbjct: 221 TA 222
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G+ +P Y +GP H F+ TV + G ++KK+A++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQKAAS 232
Query: 148 AAWSAL 153
AW+AL
Sbjct: 233 TAWNAL 238
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P+Y GPDH F A V G+ + ++AE AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPL-GVGIGRSKKEAEQKAA 231
Query: 62 EVALDVLSKKGP 73
A + LS GP
Sbjct: 232 STAWNALSDAGP 243
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA + P Y GPDH+ F A GE T ++AE AA
Sbjct: 182 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEEL-GEGVGRTKKEAEQKAA 240
Query: 62 EVALDVLSKKGPS 74
+A L+++GPS
Sbjct: 241 SLAWQALAERGPS 253
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G P Y +GP H F+ +AG +TKK+A++ AA
Sbjct: 182 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 241
Query: 148 AAWSALKKQAKSA 160
AW AL ++ S+
Sbjct: 242 LAWQALAERGPSS 254
>gi|381397762|ref|ZP_09923171.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
gi|380774890|gb|EIC08185.1| Ribonuclease 3 [Microbacterium laevaniformans OR221]
Length = 230
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + R L P Y GP H VF+ TV + + TG +KKQA+ AAL
Sbjct: 163 KTSLQELAARLTLAPPAYVISAEGPDHNRVFTATVSVGDATATG-VGSSKKQAEMAAALT 221
Query: 149 AWSALKKQA 157
W L +A
Sbjct: 222 LWRTLSDRA 230
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
Length = 270
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE R GL P Y +GP H F+ V LAG + +TKK A++ AA
Sbjct: 187 WKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVYGRGAGRTKKAAEQEAAE 246
Query: 148 AAWSALKKQA 157
AAW AL A
Sbjct: 247 AAWHALSDGA 256
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETF 44
+K LQEL R P+Y GPDHA F AAV G +
Sbjct: 187 WKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVY 229
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|355667100|gb|AER93758.1| adenosine deaminase, RNA-specific [Mustela putorius furo]
Length = 456
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 71/182 (39%), Gaps = 34/182 (18%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V G F P + + A+ AA A+
Sbjct: 164 QFASQTCEFNLLEQS----GPPHEPRFKFQVIIGGREF-PPAEAGSKKVAKQDAALKAMT 218
Query: 67 VL-------------------SKKG--------PSKVLAARVLDETGVYKNLLQETSHRA 99
+L ++KG PS AA + LL E H+
Sbjct: 219 ILLEEAKAKDGGRPEEPYDGSTEKGSEKSAESQPSTPSAAALFSGKNPVTTLL-ECVHKL 277
Query: 100 GLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
G R GP H P F V + +F A +KK A++ AA A AL +A S
Sbjct: 278 GTSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTVSAPSKKVAKQMAAEEAMKALHGEATS 337
Query: 160 AF 161
+
Sbjct: 338 SI 339
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 36/168 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKG---------- 72
REGP H P+F+ V TF PT + + + A+ AAE A+ L +
Sbjct: 288 REGPAHDPKFQYCVAMGAHTF--PTVSAPSKKVAKQMAAEEAMKALHGEATSSIPLDTQP 345
Query: 73 ---------------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSG 112
PSKV R + E Y N L E + G +SG
Sbjct: 346 GDTSTEPFDNLQSGLPSKV---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSG 402
Query: 113 PGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P H P F ++ G F A +KKQ ++ AA AA L +++ A
Sbjct: 403 PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGESEKA 450
>gi|426218981|ref|XP_004003711.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Ovis
aries]
Length = 1155
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 88/219 (40%), Gaps = 42/219 (19%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FN+ S GP H PRFK V +G F P + + A+ AA A+
Sbjct: 468 QFASQTCEFNMIEQS----GPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAATKAMM 522
Query: 67 VL-------------------SKKGPSKVLAARVLDETGVY----KN---LLQETSHRAG 100
+L S++ P K ++ + KN L E H+ G
Sbjct: 523 ILLEEAKAQDSGSPEEACRYSSEREPEKTAESQTATPSATSFLSGKNPVTTLLECVHKLG 582
Query: 101 LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
R GP H P F V + +F A +KK A++ AA A AL+ +A S+
Sbjct: 583 SSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALQGEATSS 642
Query: 161 FSSSSFSPPSSESGTNDEQDQAI---------IARYLAT 190
+SS P S+ + D + + + RYL T
Sbjct: 643 -ASSDDQPGSTNTEAFDTLESVMPNKVRRISELVRYLNT 680
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 61/166 (36%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
REGP H P+F+ V TF + + S + AA E
Sbjct: 592 REGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALQGEATSSASSDDQPGS 651
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
A D L P+KV R + E Y N L E + G +SGP
Sbjct: 652 TNTEAFDTLESVMPNKV---RRISELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 708
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 709 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGEDEKA 754
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA---AR 80
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + + + R
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQVR 400
Query: 81 VLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA 135
+ E Y N L E + G +SGP H P F ++ G F A
Sbjct: 401 KIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCA 460
Query: 136 KTKKQAQKNAALAAWSAL 153
+KKQ ++ AA AA L
Sbjct: 461 HSKKQGKQEAADAALRVL 478
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 233
Query: 148 AAW 150
+AW
Sbjct: 234 SAW 236
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 232
Query: 62 EVA 64
E A
Sbjct: 233 ESA 235
>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
Length = 228
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P Y + REGPDHAP+F+ AV +GET E+ + R AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGREGPDHAPQFRIAVVLASGETEEAQ--AGSKRNAEQAA 216
Query: 61 AEVALDVLSK 70
A+ L+ L +
Sbjct: 217 AKALLERLER 226
>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 237
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 67 VLSKKGPSKVLAARVLDET--GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTV 123
VL+ GP L RV+D YK +LQE P Y T+ SGP H FS ++
Sbjct: 145 VLALLGP---LDERVIDRAPRRDYKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSI 201
Query: 124 ELAGVSFTGEPAKTKKQAQKNAA---LAAWSA 152
E+ K+KK+A++NAA L W+A
Sbjct: 202 EINDRQLAMGAGKSKKEAEQNAARRGLTNWNA 233
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G LP YT + RSGP H P+F+ +V + G E +++ A+K AA
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQGTSRRAAEKAAAT 220
Query: 148 AAWSALKKQAKS 159
+ ++K +S
Sbjct: 221 RLLNIIEKDNRS 232
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNG--ETFESPTFCSTLRQAEHA 59
K LQE AQ LP Y+ I R GPDHAP F +V G E E T + R AE A
Sbjct: 161 KTALQEWAQGQGHPLPRYTMIERSGPDHAPIFTVSVFVEGFDEVAEQGT---SRRAAEKA 217
Query: 60 AAEVALDVLSKKGPS 74
AA L+++ K S
Sbjct: 218 AATRLLNIIEKDNRS 232
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 234
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE S L P Y +GP H F+ + G KTKK+A++ AA
Sbjct: 164 WKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQRAAE 223
Query: 148 AAWSALKKQAK 158
AW AL++Q++
Sbjct: 224 LAWKALEEQSR 234
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL+ P Y GPDH F A G+ + T T ++AE AA
Sbjct: 164 WKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGT-GKTKKEAEQRAA 222
Query: 62 EVALDVLSKK 71
E+A L ++
Sbjct: 223 ELAWKALEEQ 232
>gi|158521513|ref|YP_001529383.1| ribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158510339|gb|ABW67306.1| Ribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 231
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFS 120
+ + V+ K + + A LD YK+LLQE + K P Y + +GP H F
Sbjct: 134 DAVMAVVRHKFENDIEALAALDMNRNYKSLLQELTQATDGKAPTYEIIDETGPDHDKTFH 193
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
C V + G K KK AQ++AA A + +K +
Sbjct: 194 CRVSAGDIQAEG-SGKNKKTAQQDAAHKALALIKGE 228
>gi|242014706|ref|XP_002428026.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
humanus corporis]
gi|212512545|gb|EEB15288.1| Double-stranded RNA-specific editase Adar, putative [Pediculus
humanus corporis]
Length = 669
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 108 TVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+V++GPG+ P+F+ TV++ GV + G K KK A+ NAA AA S +++
Sbjct: 63 SVQNGPGNSPIFTTTVDINGVRYIGR-GKNKKLAKHNAAEAALSGIQQ 109
>gi|407647467|ref|YP_006811226.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407310351|gb|AFU04252.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 237
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G ++ ++KK+A++ AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAYGQGVGRSKKEAEQKAAG 227
Query: 148 AAWSALKKQA 157
A+ AL +A
Sbjct: 228 TAYQALTAEA 237
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYK++LQ + Q+ + LP+Y ++G DH P F A V N +F SP+ S+ + A+ A
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 61 AEVALD 66
A++A +
Sbjct: 61 AKLAFN 66
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQELA + P Y GPDH+ RF A+V +GE S S+ + AE AAA
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVI-STGIGSSKKHAEMAAA 221
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + + G P Y SGP H F +V L+G + +KK A+ AAL
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVISTGIGSSKKHAEMAAALE 223
Query: 149 AWSALK 154
AW+ L+
Sbjct: 224 AWTLLQ 229
>gi|379710093|ref|YP_005265298.1| RNase III [Nocardia cyriacigeorgica GUH-2]
gi|374847592|emb|CCF64662.1| RNase III [Nocardia cyriacigeorgica GUH-2]
Length = 240
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G ++ ++KK+A++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSALKKQA 157
AA+ AL ++
Sbjct: 231 AAYQALTAES 240
>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola potens JR]
gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
Length = 245
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQEL Q+ N +Y+ I EGPDH F A V +G+ + T ++AE AA
Sbjct: 168 YKTELQELVQQKADNTLTYAIIGEEGPDHNKVFTAGVYCHGKIWGVGK-GRTKKEAEQAA 226
Query: 61 AEVALD 66
A AL+
Sbjct: 227 AHDALE 232
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y ++E GP H F + V+ NG + T S ++AE A
Sbjct: 175 FKSQLQELVQRDGAGTIEYKILQEKGPAHNREFVSTVSLNGRELGTGTGRSK-KEAEQHA 233
Query: 61 AEVALDVL 68
A++AL+VL
Sbjct: 234 AQMALEVL 241
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 84 ETGV---YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKK 139
E G+ YK LQE + + LP Y V+ G H F C V + GV + K+KK
Sbjct: 156 ENGIIFDYKTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIGKSKK 215
Query: 140 QAQKNAALAAWSAL 153
A+KNAA A L
Sbjct: 216 DAEKNAAKEAVKKL 229
>gi|297626608|ref|YP_003688371.1| ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296922373|emb|CBL56945.1| Ribonuclease III [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 240
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQE+A + P Y GPDH RF A +G TF+ P +QAE AA
Sbjct: 164 WKTSLQEIAAAMESDPPEYRISETGPDHDKRFTAVALVDGRTFD-PGMGHNKKQAEQHAA 222
Query: 62 EVALDVLS 69
E A VL
Sbjct: 223 ENAFRVLD 230
>gi|392394753|ref|YP_006431355.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525831|gb|AFM01562.1| ribonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 262
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G T ++AE AA
Sbjct: 191 YKTMLQEKAQREEMEVTYRILAEEGPDHNKRFTAGVFLQG-NLRGKGIGRTKKEAEQRAA 249
Query: 62 EVALDVLS 69
+ LD L
Sbjct: 250 QQVLDELG 257
>gi|418056705|ref|ZP_12694757.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
gi|353209322|gb|EHB74727.1| Ribonuclease 3 [Hyphomicrobium denitrificans 1NES1]
Length = 235
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K+ LQE AQ LP Y+ + R+GPDHAPRF A V G S R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRAPAQGEGASK-RIAEQAAA 219
Query: 62 EVAL 65
L
Sbjct: 220 TALL 223
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE + GL LP YT V R GP H P F+ V +AG + PA+ + +++ A
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRA----PAQGEGASKRIAEQ 216
Query: 148 AAWSAL 153
AA +AL
Sbjct: 217 AAATAL 222
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE AQ PSY IRE GPDH F A N E F S + + AE A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVNKE-FTSQGKGRSKKAAEQDA 521
Query: 61 AEVALDVLSKKGPS 74
A L +L ++ PS
Sbjct: 522 AREVLILLGQEDPS 535
>gi|354478896|ref|XP_003501650.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Cricetulus griseus]
gi|344242007|gb|EGV98110.1| Double-stranded RNA-specific adenosine deaminase [Cricetulus
griseus]
Length = 1174
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 34/189 (17%)
Query: 6 LQELAQ---RSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
L E AQ ++C FNL S GP H PRFK V NG F P + + A+ AA
Sbjct: 458 LLEYAQFTSQTCDFNLIEQS----GPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 512
Query: 62 EVALDVLSKKGPSK------VLAARVLDETGVYKNLLQETSHRAGL---KLPVYTTV--- 109
A+ +L ++ +K L+ +DE Q +S A L K PV T +
Sbjct: 513 MKAMAILLREAKAKDSGNPEELSNCPMDEDSEKPAESQTSSSSATLFSGKSPVTTLLECM 572
Query: 110 -------------RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
+ GP H P F V + +F A +KK A++ AA A AL+++
Sbjct: 573 HKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAMKALQEE 632
Query: 157 AKSAFSSSS 165
A ++ S
Sbjct: 633 AANSADDQS 641
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 32/164 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKG---------- 72
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L ++
Sbjct: 586 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAMKALQEEAANSADDQSGG 643
Query: 73 -----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
P+K+ R + E Y N L E + G +SGP H
Sbjct: 644 VNTESLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHE 700
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 701 PKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 744
>gi|354478898|ref|XP_003501651.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Cricetulus griseus]
Length = 1148
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 34/189 (17%)
Query: 6 LQELAQ---RSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
L E AQ ++C FNL S GP H PRFK V NG F P + + A+ AA
Sbjct: 458 LLEYAQFTSQTCDFNLIEQS----GPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 512
Query: 62 EVALDVLSKKGPSK------VLAARVLDETGVYKNLLQETSHRAGL---KLPVYTTV--- 109
A+ +L ++ +K L+ +DE Q +S A L K PV T +
Sbjct: 513 MKAMAILLREAKAKDSGNPEELSNCPMDEDSEKPAESQTSSSSATLFSGKSPVTTLLECM 572
Query: 110 -------------RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
+ GP H P F V + +F A +KK A++ AA A AL+++
Sbjct: 573 HKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAMKALQEE 632
Query: 157 AKSAFSSSS 165
A ++ S
Sbjct: 633 AANSADDQS 641
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 32/182 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKG---------- 72
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L ++
Sbjct: 586 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAMKALQEEAANSADDQSGG 643
Query: 73 -----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
P+K+ R + E Y N L E + G +SGP H
Sbjct: 644 VNTESLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHE 700
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTN 176
P F ++ G F A +KKQ +++AA AA L +++ A P S S +
Sbjct: 701 PKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKAEQLGFAELPLSGSTFH 760
Query: 177 DE 178
D+
Sbjct: 761 DQ 762
>gi|296229001|ref|XP_002760089.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Callithrix jacchus]
Length = 1226
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 49/223 (21%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 513 QFASQTCEFNLIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 567
Query: 67 VLSKKGPSKVLAARVLDETGVYKN----------------------------LLQETSHR 98
+L ++ +K +E+ Y L E H+
Sbjct: 568 ILLEEAKAKDSGKS--EESSHYSTEKESEKTAESQPSAPSATPFFSGKSPVTTLLECMHK 625
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
G + GP H P F V++ +F A +KK A++ AA A AL +A
Sbjct: 626 LGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEAT 685
Query: 159 SAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNSQR 201
++ S D+Q + I+ L L+ N +R
Sbjct: 686 NSMLS-------------DDQPEGTISESLDNLESMMPNKVRR 715
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + +L+
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMLSDDQPE 695
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 696 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE S +PVY V GP H +F + +A F K+KKQA++NAA
Sbjct: 179 YKTRLQEVSQEKFRAVPVYRLVDEKGPDHDKIFHVEIIIAQQLFGNGEGKSKKQAEQNAA 238
Query: 147 LAAWSAL 153
A + L
Sbjct: 239 RMALAKL 245
>gi|300023749|ref|YP_003756360.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
gi|299525570|gb|ADJ24039.1| ribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
Length = 235
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K+ LQE AQ LP Y+ + R+GPDHAPRF A V G S R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRAPAQGEGASK-RIAEQAAA 219
Query: 62 EVAL 65
L
Sbjct: 220 TALL 223
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE + GL LP YT V R GP H P F+ V +AG + PA+ + +++ A
Sbjct: 161 KSALQEWAQGQGLALPKYTVVSRKGPDHAPRFTAEVIIAGRA----PAQGEGASKRIAEQ 216
Query: 148 AAWSAL 153
AA +AL
Sbjct: 217 AAATAL 222
>gi|444432141|ref|ZP_21227300.1| ribonuclease III [Gordonia soli NBRC 108243]
gi|443886970|dbj|GAC69021.1| ribonuclease III [Gordonia soli NBRC 108243]
Length = 243
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 81 VLDETGV------YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEP 134
++D G+ +K LQE S G P Y +GP H F+ T +AG
Sbjct: 158 IIDRAGLLGAGLDWKTSLQELSAEQGQGPPQYQIASTGPDHDKEFTATAVIAGEELGTGV 217
Query: 135 AKTKKQAQKNAALAAWSAL 153
+TKK+A++ AA AW AL
Sbjct: 218 GRTKKEAEQKAAAHAWKAL 236
>gi|296229003|ref|XP_002760090.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Callithrix jacchus]
Length = 1200
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 84/223 (37%), Gaps = 49/223 (21%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 513 QFASQTCEFNLIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 567
Query: 67 VLSKKGPSKVLAARVLDETGVYKN----------------------------LLQETSHR 98
+L ++ +K +E+ Y L E H+
Sbjct: 568 ILLEEAKAKDSGKS--EESSHYSTEKESEKTAESQPSAPSATPFFSGKSPVTTLLECMHK 625
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
G + GP H P F V++ +F A +KK A++ AA A AL +A
Sbjct: 626 LGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEAT 685
Query: 159 SAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNSQR 201
++ S D+Q + I+ L L+ N +R
Sbjct: 686 NSMLS-------------DDQPEGTISESLDNLESMMPNKVRR 715
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + +L+
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMLSDDQPE 695
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 696 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 755
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 756 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|409385301|ref|ZP_11237962.1| Ribonuclease III [Lactococcus raffinolactis 4877]
gi|399207246|emb|CCK18877.1| Ribonuclease III [Lactococcus raffinolactis 4877]
Length = 239
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 83 DETGVYKNLLQETSHRAGL-----KLPV-YTTV-RSGPGHGPVFSCTVELAGVSFTGEPA 135
D+ YK+ LQE + AG K+P+ Y V +SGP H PVF V G +
Sbjct: 155 DKVTDYKSALQEIFYTAGQIDKNNKIPLEYVVVGKSGPVHAPVFEVDVVFEGRTIGHGKG 214
Query: 136 KTKKQAQKNAALAAWSALKKQAKS 159
K+KK A+++AA +A+ K Q K
Sbjct: 215 KSKKIAEQDAARSAFLKQKNQQKD 238
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length = 240
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G ++ ++KK+A++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSALKKQA 157
AA+ AL ++
Sbjct: 231 AAYQALTAES 240
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 75 KVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEP 134
K ++ D Y +L+ E + G R GP HGP F + + G +
Sbjct: 215 KSVSVTTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGE 274
Query: 135 AKTKKQAQKNAALAAWSALK 154
KT K+A++NAA AW L+
Sbjct: 275 GKTAKEARQNAAQLAWPVLQ 294
>gi|83858196|ref|ZP_00951718.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
gi|83853019|gb|EAP90871.1| ribonuclease III [Oceanicaulis sp. HTCC2633]
Length = 228
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K+ LQE + + G +PVY TV R GP H PVF V L GV+ +K+ AQ+ AA
Sbjct: 159 KSQLQEWAAQKGYGVPVYETVARKGPDHRPVFEIEVRLDGVAPARGEGGSKQDAQRAAA 217
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 75 KVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEP 134
K ++ D Y +L+ E + G R GP HGP F + + G +
Sbjct: 215 KSVSVTTADRERNYISLINEHCQKKGFSHSFVMVDRQGPSHGPQFYYQLSIDGHKYPVGE 274
Query: 135 AKTKKQAQKNAALAAWSALK 154
KT K+A++NAA AW L+
Sbjct: 275 GKTAKEARQNAAQLAWPVLQ 294
>gi|338738021|ref|YP_004674983.1| ribonuclease III [Hyphomicrobium sp. MC1]
gi|337758584|emb|CCB64409.1| ribonuclease III [Hyphomicrobium sp. MC1]
Length = 235
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K+ LQE AQ LP Y+ + R GPDHAPRF A V G S R AE AAA
Sbjct: 161 KSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRAPAQGEGASK-RIAEQAAA 219
Query: 62 EVALDVLSKKGPSKVLAARVLD 83
+L+++G + ARV D
Sbjct: 220 SA---LLTREG----VGARVGD 234
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE + GL LP YT V R+GP H P F+ V +AG + PA+ + +++ A
Sbjct: 161 KSALQEWAQGQGLALPRYTVVARNGPDHAPRFTAEVLIAGRA----PAQGEGASKRIAEQ 216
Query: 148 AAWSAL 153
AA SAL
Sbjct: 217 AAASAL 222
>gi|442321139|ref|YP_007361160.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488781|gb|AGC45476.1| ribonuclease III [Myxococcus stipitatus DSM 14675]
Length = 257
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 88 YKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK LLQE +H LKL P Y V +GP H VF + L ++KK+A+++A
Sbjct: 162 YKTLLQEMAHEK-LKLSPRYRVVSEAGPEHSKVFEVELTLGDAPLARASGRSKKEAEQSA 220
Query: 146 ALAAWSALKKQA 157
A A LK++A
Sbjct: 221 AQATLERLKREA 232
>gi|88606764|ref|YP_505691.1| ribonuclease III [Anaplasma phagocytophilum HZ]
gi|123494405|sp|Q2GIW0.1|RNC_ANAPZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88597827|gb|ABD43297.1| ribonuclease III [Anaplasma phagocytophilum HZ]
Length = 236
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ F +PSY I + G +HAP F V NG+ + T C + AE AAA
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHA-TGCKK-KYAEIAAA 223
Query: 62 EVALDVLSKK 71
++ L+ ++K+
Sbjct: 224 KLMLEKVTKQ 233
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|453068807|ref|ZP_21972078.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|452764990|gb|EME23255.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
Length = 257
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGL 101
+ ES L+ A V LD+ L LD +K LQE + G
Sbjct: 131 DGMESILGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLD----WKTSLQELTAEHGA 186
Query: 102 KLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+PVY +GP H F+ TV ++G ++KK+A++ AA +AW +
Sbjct: 187 GVPVYEITATGPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWKTM 238
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQEL QR + Y + E GP H F + V+ +G+ + T S ++AE A
Sbjct: 176 YKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSK-KEAEQHA 234
Query: 61 AEVALDVLSK 70
A++AL+ L K
Sbjct: 235 AQMALEKLKK 244
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE + P YT + R+GP H +F V + GV++ K KK+A++ AA
Sbjct: 179 YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAYGPGIGKNKKEAEQEAA 238
Query: 147 LAAWSAL 153
A+ A+
Sbjct: 239 KLAYKAI 245
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q+ N P+Y+ + R GPDH F V+ NG + P ++AE A
Sbjct: 179 YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAY-GPGIGKNKKEAEQEA 237
Query: 61 AEVALDVLS 69
A++A ++
Sbjct: 238 AKLAYKAIT 246
>gi|407648449|ref|YP_006812208.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407311333|gb|AFU05234.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 244
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G+++ ++KK+A++NAA
Sbjct: 174 WKTSLQEHTAEHGLGVPSYEITSTGPDHDKEFTATAVVGGLAYGKGVGRSKKEAEQNAAA 233
Query: 148 AAWSALKKQ 156
AA++AL ++
Sbjct: 234 AAYTALTQK 242
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +V L + KK + V++ R +D +K LQE +PVYT +GP H F
Sbjct: 152 ARDVILRLFQKKIDNAVVSGRHMD----WKTNLQELCAELKAPMPVYTATSTGPEHDQTF 207
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+ +AG++ KK A++ AA A L++
Sbjct: 208 TAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|451337399|ref|ZP_21907944.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
gi|449419994|gb|EMD25505.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
Length = 248
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + AGL +P Y +GP H FS TV + G TKK+A++ +A
Sbjct: 170 WKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYGSGTTKKEAEQKSAE 229
Query: 148 AAWSALKKQ 156
AW L +
Sbjct: 230 TAWRQLSAE 238
>gi|336437038|ref|ZP_08616747.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006172|gb|EGN36208.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 236
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 89 KNLLQETSHRAGLKLPVY-TTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE G + Y T GP H VFS E+ GVS+ ++KK A++ AA
Sbjct: 167 KTILQEIVQAKGKEAVNYRLTGEDGPDHNKVFSVNAEIGGVSYGSGKGRSKKAAEQEAAY 226
Query: 148 AAWSALKKQ 156
A LKK+
Sbjct: 227 RAILRLKKE 235
>gi|348579304|ref|XP_003475420.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Cavia porcellus]
Length = 1137
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 37/215 (17%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V G F P + + A+ AA A+
Sbjct: 450 QFASQTCEFNLVEQS----GPSHEPRFKYQVVIGGREF-PPAEAGSKKVAKQDAAMKAMT 504
Query: 67 VLSKKGPSK-------------------------VLAARVLDETGVYKNLLQETSHRAGL 101
+L ++ ++ +A L L E H+ G
Sbjct: 505 ILLREAKAQDSGKPEDISLCSTEMELEKTEPQPPTHSASSLFSGKSPVTTLLECMHKLGN 564
Query: 102 KLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
+ GP H P F V + +F A +KK A++ AA A AL ++A +A
Sbjct: 565 SCEFRLLSKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAMKALHEEATNAA 624
Query: 162 -----SSSSFSPPSSESGT-NDEQDQAIIARYLAT 190
++S S + ESG N+ + + RYL T
Sbjct: 625 DNQSGDTNSESLDTLESGVPNNIRRIGELVRYLNT 659
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKGP------SKV 76
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L ++ S
Sbjct: 573 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAMKALHEEATNAADNQSGD 630
Query: 77 LAARVLD--ETGVYKNL-----------------LQETSHRAGLKLPVYTTVRSGPGHGP 117
+ LD E+GV N+ L E + G +SGP H P
Sbjct: 631 TNSESLDTLESGVPNNIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 690
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F ++ G F A +KKQ ++ AA AA L
Sbjct: 691 KFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 726
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 41 GETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAG 100
G+ FE+ + A VAL +L K+ ++ TG YK +LQE
Sbjct: 123 GDAFEALIGAIFKDSDYYTAKNVALKLL----LGKINKLEEIEGTGDYKTVLQEFVQGKY 178
Query: 101 LKLPVYTTVRS-GPGHGPVFSCTV----ELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
K+P Y + + GP H VF +V ++ GV K+KK+A+K+AA A LK
Sbjct: 179 RKMPEYKLLNTKGPDHDKVFEISVSWNDKIYGVGI----GKSKKEAEKHAAKEALVKLKN 234
Query: 156 QA 157
++
Sbjct: 235 KS 236
>gi|289705863|ref|ZP_06502243.1| ribonuclease III [Micrococcus luteus SK58]
gi|289557406|gb|EFD50717.1| ribonuclease III [Micrococcus luteus SK58]
Length = 244
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
+L E+ +K ++ E + R GL Y GP H P + T+ + + A +KKQ
Sbjct: 163 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYDSAVASSKKQ 222
Query: 141 AQKNAALAAWSALK 154
A+++AA A+W AL+
Sbjct: 223 AERDAAAASWPALE 236
>gi|441519178|ref|ZP_21000876.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441453956|dbj|GAC58837.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 240
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y +GP H F+ +AG + +TKK+A++ AA
Sbjct: 163 WKTSLQELTAARSLGVPHYQITSTGPDHDKEFTAEAVVAGRALGAGVGRTKKEAEQKAAA 222
Query: 148 AAWSALKKQAKSA 160
AWS L + A
Sbjct: 223 LAWSTLNDEETGA 235
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + P Y GP H VF+ V ++ ++KK+A++ AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQKAAE 232
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQA 182
AW L ++A + +S P + G DE D+A
Sbjct: 233 QAWKELTRRANAVLTSE--PEPEALDGEADETDEA 265
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA F P Y EGPDH F A V + E S ++AE AA
Sbjct: 173 WKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSK-KEAEQKAA 231
Query: 62 EVALDVLSKK 71
E A L+++
Sbjct: 232 EQAWKELTRR 241
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQE+ QR+ Y I+E GP H F + V NGE + S ++AE A
Sbjct: 176 YKSQLQEIVQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGEILGTGVGKSK-KEAEQKA 234
Query: 61 AEVALDVLSKK 71
A+ ALD L K+
Sbjct: 235 AKEALDELKKE 245
>gi|2500552|sp|Q52698.1|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
Length = 228
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P Y + R+GPDHAP+F+ AV +GET E+ + R AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQ--AGSKRNAEQAA 216
Query: 61 AEVALDVLSK 70
A+ L+ L +
Sbjct: 217 AKALLERLER 226
>gi|149751348|ref|XP_001497601.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Equus
caballus]
Length = 1145
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 88/221 (39%), Gaps = 46/221 (20%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V +G F P + + A+ AA A+
Sbjct: 458 QFASQTCEFNLIEQS----GPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAAMKAMT 512
Query: 67 VLSKKGPSKVLAARVLDETGVY-------------------------KN---LLQETSHR 98
+L ++ +K +E+ Y KN L E H+
Sbjct: 513 ILLEEAKAKDSGRS--EESYYYSTERESEKTAESQPTTPSATSFFSGKNPVTTLLECVHK 570
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
G R GP H P F V + +F A +KK A++ AA A AL ++A
Sbjct: 571 LGSSCEFRLLSREGPAHDPKFQYCVAMGTHTFPTASAPSKKVAKQMAAEEAMKALHEEAA 630
Query: 159 SAFSSSSFSPPSSESGTNDEQDQAI---------IARYLAT 190
++ S + P S+ + + D + I + RYL T
Sbjct: 631 NSTPSDN-QPGSTNTESLDNLESVIPNKVRRIGELVRYLNT 670
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
REGP H P+F+ V TF + + S + A+ AAE A+ L ++
Sbjct: 582 REGPAHDPKFQYCVAMGTHTFPTASAPSK-KVAKQMAAEEAMKALHEEAANSTPSDNQPG 640
Query: 73 --------------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
P+KV R + E Y N L E + G +SGP
Sbjct: 641 STNTESLDNLESVIPNKV---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 697
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 698 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 744
>gi|403293613|ref|XP_003937807.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Saimiri boliviensis boliviensis]
Length = 1182
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 49/223 (21%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 469 QFASQTCEFNLIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 523
Query: 67 VLSKKGPSKVLAARVLDETGVYKN----------------------------LLQETSHR 98
+L ++ +K + +E+ Y L E H+
Sbjct: 524 ILLEEAKAK--DSGKPEESSHYSTEKESEKTAESQPSTPSATPFFSGKSPVTTLLECMHK 581
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
G + GP H P F V++ +F A +KK A++ AA A AL +A
Sbjct: 582 LGNSCEFRLLSKEGPAHEPKFEYCVQVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEAT 641
Query: 159 SAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNSQR 201
++ S D+Q + I+ L L+ N +R
Sbjct: 642 NSMLS-------------DDQPEGTISESLDNLESMMPNKVRR 671
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 28/157 (17%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
+EGP H P+F+ V +TF S + S + A+ AAE A+ L + + +L+
Sbjct: 593 KEGPAHEPKFEYCVQVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMLSDDQPE 651
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 652 GTISESLDNLESMMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 711
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P F ++ G F A +KKQ ++ AA AA L
Sbjct: 712 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 748
>gi|301774246|ref|XP_002922574.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Ailuropoda melanoleuca]
Length = 1144
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 34/181 (18%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL + GP H PRFK V G F P + + A+ AA A+
Sbjct: 460 QFASQTCEFNLLE----QRGPPHEPRFKFQVIIGGREF-PPAEAGSKKVAKQDAALKAMT 514
Query: 67 VL-------------------SKKG--------PSKVLAARVLDETGVYKNLLQETSHRA 99
+L ++KG PS AA + LL E H+
Sbjct: 515 ILLEEAKAKDSGRPEEPYDCSTEKGSEKTAESQPSTPSAASLFSGKNPVTTLL-ECVHKL 573
Query: 100 GLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
G R GP H P F V + +F A +KK A++ AA A AL +A S
Sbjct: 574 GSSCEFRLLSREGPAHDPKFQYCVAMGAHTFPTASAPSKKVAKQMAAEEAVKALHGEASS 633
Query: 160 A 160
+
Sbjct: 634 S 634
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 68/182 (37%), Gaps = 28/182 (15%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA----- 78
REGP H P+F+ V TF + + S + A+ AAE A+ L + S A
Sbjct: 584 REGPAHDPKFQYCVAMGAHTFPTASAPSK-KVAKQMAAEEAVKALHGEASSSAPADPQLG 642
Query: 79 -----------------ARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHG 116
R + E Y N L E + G +SGP H
Sbjct: 643 GTNTESFDNLESGMPNKVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHE 702
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTN 176
P F ++ G F A +KKQ ++ AA AA L + + A P S S +
Sbjct: 703 PKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLSGSTFH 762
Query: 177 DE 178
D+
Sbjct: 763 DQ 764
>gi|226371677|ref|NP_001139768.1| double-stranded RNA-specific adenosine deaminase isoform 3 [Mus
musculus]
gi|38372251|sp|Q99MU3.2|DSRAD_MOUSE RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=RNA adenosine deaminase 1
gi|148683239|gb|EDL15186.1| adenosine deaminase, RNA-specific, isoform CRA_b [Mus musculus]
Length = 1178
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K++LQE +QR +P Y E GP H P F AV NGE + S ++++ AA
Sbjct: 162 KSELQEFSQRIYHEMPVYELEEESGPAHLPHFTTAVYVNGELVGRGSGTSK-KESQTQAA 220
Query: 62 EVALDVLSK 70
+ ALD L K
Sbjct: 221 QAALDKLEK 229
>gi|451944546|ref|YP_007465182.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
gi|451903933|gb|AGF72820.1| ribonuclease III [Corynebacterium halotolerans YIM 70093 = DSM
44683]
Length = 249
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
EVA DV+ + K+ A +K LQE L +PVY + +GP H F+
Sbjct: 151 EVARDVVLRLFAQKIDTASATGLHQDWKTTLQERLAELRLDMPVYASTSTGPEHDLTFTA 210
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TV +AG KK A++ +A A+ AL++
Sbjct: 211 TVSVAGQLLGTGTGPNKKLAEQESAHQAYRALRE 244
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR + YS + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALDVLSKKG 72
A++AL L G
Sbjct: 233 AQMALQKLKTIG 244
>gi|71059975|emb|CAJ18531.1| Adar [Mus musculus]
Length = 1152
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|62637420|ref|YP_227418.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
gi|115503280|gb|ABI99198.1| DsRNA binding PKR inhibitor [Deerpox virus W-848-83]
Length = 199
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 25/166 (15%)
Query: 11 QRSCFNLPSYSCIREG-----PDHAPR-FKAAVNFNGETFESPTFCSTLRQAEHAAAEVA 64
++S N Y EG P + PR FK + N E SP + + E+
Sbjct: 44 EKSHINRQLYKLYHEGSLNVLPTNPPRWFKKPCSNNEEDIISP-----IVETNTYLDELD 98
Query: 65 LDVLSKKGPS---------KVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGH 115
++ + K P K+LA + + + Q TS + + + SGP H
Sbjct: 99 IETMDKNNPELFGDTIPYEKILAWKDKNPCSILNEYCQYTSRDWFIDI-----ISSGPIH 153
Query: 116 GPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
P+F+ T+ ++GV F TKK+A+ NA A + + F
Sbjct: 154 KPLFTATLCISGVKFRSAIGSTKKEAKTNATKMAMDLIINNSIIKF 199
>gi|27768964|gb|AAH42505.1| Adenosine deaminase, RNA-specific [Mus musculus]
Length = 1152
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 62 EVALDVLSKK-GPSKVLAARV---LDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGP 117
EV DVL + GPS +AA + LD +K LQE S GL P+Y GP H
Sbjct: 145 EVVRDVLLRLLGPSLAVAAELGAGLD----WKTSLQELSAELGLGAPLYDVDGVGPDHDR 200
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
F+ V +A + KK A++ AA A++AL++
Sbjct: 201 RFTAHVVIAERVWGSGTGSAKKHAEQEAARTAYAALRE 238
>gi|13236214|gb|AAK16102.1|AF291876_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1178
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|74140777|dbj|BAC40888.2| unnamed protein product [Mus musculus]
Length = 1173
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|226371679|ref|NP_062629.3| double-stranded RNA-specific adenosine deaminase isoform 1 [Mus
musculus]
gi|148683238|gb|EDL15185.1| adenosine deaminase, RNA-specific, isoform CRA_a [Mus musculus]
Length = 1152
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE AQ P Y CI E GPDH F+ V+ + + T S ++AE A
Sbjct: 166 YKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSLGPDVYARATGRSK-KEAEQNA 224
Query: 61 AEVALDVLSK 70
A AL L++
Sbjct: 225 AHAALKWLAR 234
>gi|405980874|ref|ZP_11039203.1| ribonuclease III [Actinomyces neuii BVS029A5]
gi|404392893|gb|EJZ87950.1| ribonuclease III [Actinomyces neuii BVS029A5]
Length = 257
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA + P Y GPDHA F A +G+ S T S+ + A+H AA
Sbjct: 162 WKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVASGT-ASSKKLAQHEAA 220
Query: 62 EVALDVLSKK 71
A++ L K+
Sbjct: 221 RAAVEELQKR 230
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 77 LAARVLDET---GV---YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSF 130
L A +LD+ G+ +K LQE + L PVY + +GP H VF+ + G
Sbjct: 145 LLADLLDQVVQRGIGMDWKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVV 204
Query: 131 TGEPAKTKKQAQKNAALAAWSALKKQ 156
A +KK AQ AA AA L+K+
Sbjct: 205 ASGTASSKKLAQHEAARAAVEELQKR 230
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE R ++ Y + + GP H +FS V+L G+ ++KK+A++NAA
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNGIPIGQGRGRSKKEAEQNAA 214
Query: 147 LAAWSALK 154
AA LK
Sbjct: 215 KAAIEKLK 222
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL QR + Y I EGPDHA F V+ NG S ++AE A
Sbjct: 155 YKTALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNGIPIGQGRGRSK-KEAEQNA 213
Query: 61 AEVALDVL 68
A+ A++ L
Sbjct: 214 AKAAIEKL 221
>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
Length = 243
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+ LQE S + LP+YT V++ GP H F V++ + K+KK+A + A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKYGPATGKSKKEAAQAVA 231
Query: 147 LAAWSALKKQAK 158
AW+ L K K
Sbjct: 232 ELAWNDLHKSEK 243
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL+Q+ LP Y+ ++ +GPDH F V + + + P + ++A A
Sbjct: 172 YKSALQELSQKKFQILPLYTVVKAQGPDHDRTFWVEVQIHTKKY-GPATGKSKKEAAQAV 230
Query: 61 AEVALDVLSK 70
AE+A + L K
Sbjct: 231 AELAWNDLHK 240
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y EGPDH F AA G ++ + T S ++AE AA
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 235
Query: 62 E 62
E
Sbjct: 236 E 236
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K LQE + GL +P Y GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 235
>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
Length = 229
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 160 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 218
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 219 AKIALEKL 226
>gi|339320327|ref|YP_004680022.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
gi|338226452|gb|AEI89336.1| ribonuclease III [Candidatus Midichloria mitochondrii IricVA]
Length = 222
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+LLQE + R LP+Y V R G H P F+ +V + G K+KK+A++NAA
Sbjct: 151 KSLLQEWAQRDNGALPIYKIVKREGVAHSPTFTISVTAHDMQAIG-IGKSKKEAEQNAAT 209
Query: 148 AAWSALKKQAK 158
A S + + K
Sbjct: 210 ALLSQINELEK 220
>gi|239917409|ref|YP_002956967.1| RNAse III [Micrococcus luteus NCTC 2665]
gi|239838616|gb|ACS30413.1| RNAse III [Micrococcus luteus NCTC 2665]
Length = 220
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
+L E+ +K ++ E + R GL Y GP H P + T+ + + A +KKQ
Sbjct: 139 LLRESTDWKTVVAEAASRHGLGAVRYAIEGQGPAHDPRYRATLVVGEREYGSAVASSKKQ 198
Query: 141 AQKNAALAAWSALK 154
A+++AA A+W AL+
Sbjct: 199 AERDAAAASWPALE 212
>gi|2981097|gb|AAC06233.1| double-stranded RNA-specific adenosine deaminase [Mus musculus]
Length = 1152
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDKSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGRQDAADAALRVLIGESEKA 748
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFS 120
E A D + K ++ A D YK LQE + K P YT V+ +GP H F
Sbjct: 150 ETAKDFVMKYLEPQIQAVLKYDYHRDYKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFF 209
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
V++ +SF + KK+A++NAA A+ ++
Sbjct: 210 VEVKVNDLSFGPAKGRNKKEAEQNAAKLAYDSV 242
>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
gi|122499604|sp|Q28V23.1|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
Length = 227
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE + G+ P YT V RSGP H PVF V L+ AK K+QA++ AA
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAA 217
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y EGPDH F AA G ++ + T S ++AE AA
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 246
Query: 62 E 62
E
Sbjct: 247 E 247
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K LQE + GL +P Y GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 246
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length = 249
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y GP H VF+ V L+G + +TKK+A++NAA
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSGSARGTGTGRTKKEAEQNAAA 223
Query: 148 AAWSALKKQA 157
AA++ L+ A
Sbjct: 224 AAYTGLQDGA 233
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNG 41
+K LQELA +P Y EGPDHA F A V +G
Sbjct: 164 WKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSG 203
>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
gi|402546497|ref|ZP_10843372.1| ribonuclease III [Campylobacter sp. FOBRC14]
gi|189043298|sp|A7H186.1|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
gi|401017310|gb|EJP76071.1| ribonuclease III [Campylobacter sp. FOBRC14]
Length = 223
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q S P Y +R GPDH F+ A+ N + S ++ ++A+ A
Sbjct: 155 YKTALQEITQASLGTTPIYELVRSFGPDHKKEFEIALLLNDKEI-SRAIANSKKEAQQMA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKMKK 223
>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
Length = 224
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
Length = 225
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 156 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 214
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 215 AKIALEKL 222
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 237
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 238 AKIALEKL 245
>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPP 169
R GP H P+F V + G + ++ K+A++NAA AWS ++ Q S ++ P
Sbjct: 235 RIGPPHNPIFVYKVVMDGKEYPEAQGRSAKEAKQNAAQHAWSEIRDQ-------SGWTTP 287
Query: 170 SSESG 174
SSE G
Sbjct: 288 SSEDG 292
>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 224
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y EGPDH F AA G ++ + T S ++AE AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 274
Query: 62 E 62
E
Sbjct: 275 E 275
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K LQE + GL +P Y GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 274
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F AV G+ + + S ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSK-KEAEQKA 223
Query: 61 AEVALDVLSK 70
A+ AL L++
Sbjct: 224 AKDALSRLAR 233
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE R LPVY + + GP H F V + G + K+KK+A++ AA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 147 LAAWSALKKQAKSAFSSSSFSP 168
A S L + ++ +P
Sbjct: 225 KDALSRLARTSRDVLQPGKNAP 246
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 18/153 (11%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKGPSK------- 75
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L + S
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAIKALHGEATSSDDQVGLF 642
Query: 76 ---VLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAG 127
R ++E Y N L E + G +SGP H P F ++ G
Sbjct: 643 SCSKHTVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGG 702
Query: 128 VSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F A +KKQ ++ AA AA L + + A
Sbjct: 703 RWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 735
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 31/172 (18%)
Query: 15 FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG-- 72
FNL S GP H PRFK V +G F P + + A+ AA AL +L ++
Sbjct: 469 FNLIDQS----GPPHEPRFKFQVVMSGREF-PPAEAGSKKVAKQDAAMKALRILLEEAKG 523
Query: 73 --------PSKVLAARVLDETGVYK----------------NLLQETSHRAGLKLPVYTT 108
PS A + L++ + L E H+ G
Sbjct: 524 KDSGKSEEPSHHSAEKELEKIAEPQPATPSAAPLFPGKSPVTALLECVHKLGSSCEFRLL 583
Query: 109 VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
+ GP H P F V + +F A +KK A++ AA A AL +A S+
Sbjct: 584 SKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAIKALHGEATSS 635
>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 224
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F AV G+ + + S ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSK-KEAEQKA 223
Query: 61 AEVALDVLSK 70
A+ AL L++
Sbjct: 224 AKDALSRLAR 233
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE R LPVY + + GP H F V + G + ++KK+A++ AA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAA 224
Query: 147 LAAWSALKKQAKSAFSSSSFSP 168
A S L + ++ SP
Sbjct: 225 KDALSRLARTSRDVLQPGKKSP 246
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE QR LP Y + + GPDH F AV G+ + + S ++AE A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSK-KEAEQKA 223
Query: 61 AEVALDVLSK 70
A+ AL L++
Sbjct: 224 AKDALSRLAR 233
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE R LPVY + + GP H F V + G + K+KK+A++ AA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 147 LAAWSALKKQAKSAFSSSSFSP 168
A S L + ++ +P
Sbjct: 225 KDALSRLARTSRDVLQPGKNAP 246
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 224
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
Length = 225
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 156 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 214
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 215 AKIALEKL 222
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
Length = 224
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
Length = 224
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
Length = 224
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGEIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
Length = 224
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ NG+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLNGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
Length = 224
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 246
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 91 LLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
LL++ + R GL P Y T SGP H P F+ TV L G + TKK+A+ +AA A
Sbjct: 185 LLEKIAGR-GLGEPEYNTTISGPAHDPHFTSTVSLQGKVWGHGEGHTKKEAEHHAAREAN 243
Query: 151 SAL 153
AL
Sbjct: 244 DAL 246
>gi|13272339|gb|AAK17103.1|AF291050_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 1152
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDXSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTND 177
F ++ G F A +KKQ ++AA AA L +++ A P S S +D
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGXQDAADAALRVLIGESEKAEQLGFAELPLSGSTFHD 765
Query: 178 E 178
+
Sbjct: 766 Q 766
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR + YS + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL L
Sbjct: 233 AQMALQKL 240
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQ+ AQ++ P+Y + E GPDH FK F P + T + AE A
Sbjct: 162 YKSQLQQYAQKNHGTTPTYHLLEEKGPDHRKCFKILARIGSHQF-PPAWGQTKKDAEQRA 220
Query: 61 AEVALDVL 68
A+ AL VL
Sbjct: 221 AQNALSVL 228
>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
[Danio rerio]
gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPP 169
R GP H P+F V + G + + K+A++NAA AWS ++ Q S ++ P
Sbjct: 235 RIGPPHNPIFVYKVVMDGKEYPEAQGRNAKEAKQNAAQHAWSEIRDQ-------SGWTTP 287
Query: 170 SSESG 174
SSE G
Sbjct: 288 SSEDG 292
>gi|158423628|ref|YP_001524920.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
gi|226735365|sp|A8I3B5.1|RNC_AZOC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158330517|dbj|BAF88002.1| ribonuclease III [Azorhizobium caulinodans ORS 571]
Length = 235
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL PVY V RSGP H P F V+L G+ +K+ AQK AA
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAAS 221
Query: 148 A 148
A
Sbjct: 222 A 222
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ NG+ + + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G +P Y GP H VF+ + ++KK+A++ AA
Sbjct: 175 WKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQAAH 234
Query: 148 AAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAI 183
AW+ L ++A + ++ +P E+ T+D Q +
Sbjct: 235 TAWTELTRRADAVL-NAEVTP--QETTTDDTTGQVL 267
>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 224
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALILDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 224
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEI-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
>gi|355572774|ref|ZP_09043840.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
gi|354824318|gb|EHF08571.1| Ribonuclease 3 [Methanolinea tarda NOBI-1]
Length = 240
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + ++PVY + + GP H PVF+ V ++GV TK QA + AA
Sbjct: 170 YKKRLQEHIQKTSRQIPVYERIAKEGPDHAPVFTYRVSVSGVILGTGRGITKTQATQEAA 229
Query: 147 LAAWSAL 153
A +L
Sbjct: 230 RNALCSL 236
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length = 249
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G +P Y GP H VF+ T + G +TKK+A++ AA
Sbjct: 175 WKTSLQELTAAGGHGVPEYRIDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKEAEQKAAE 234
Query: 148 AAWSALKKQA 157
AW L ++
Sbjct: 235 LAWRTLSAES 244
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y EGPDH F AA G ++ + T S ++AE AA
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 258
Query: 62 E 62
E
Sbjct: 259 E 259
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K LQE + GL +P Y GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAA 258
>gi|431892377|gb|ELK02817.1| Double-stranded RNA-specific adenosine deaminase [Pteropus alecto]
Length = 1039
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 85/216 (39%), Gaps = 41/216 (18%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A +SC FNL S GP H PRFK V +G F P + + A+ AA A+
Sbjct: 353 QFASQSCEFNLLEQS----GPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAATKAMT 407
Query: 67 VLSKKGPSK----------VLAARVLDETG------------VYKN---LLQETSHRAGL 101
+L ++ +K R ++T KN L E H+ G
Sbjct: 408 ILLEEARAKDSGRPEESHYCPTERESEKTAEPQPTAPSATPFSGKNPVTTLLECVHKLGS 467
Query: 102 KLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
R GP H P F V + +F A +KK A++ AA A AL +A +
Sbjct: 468 SCEFRLISREGPAHDPKFQYCVAMGTHTFPTASAPSKKAAKQMAAEEAMKALHGEA-TDL 526
Query: 162 SSSSFSPPSSESGTNDEQDQAI---------IARYL 188
S S P S+ S D + A+ + RYL
Sbjct: 527 SPSENQPGSASSEPFDSLESAVPSKVRRVGELVRYL 562
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL------------------ 65
REGP H P+F+ V TF + + S + A+ AAE A+
Sbjct: 476 REGPAHDPKFQYCVAMGTHTFPTASAPSK-KAAKQMAAEEAMKALHGEATDLSPSENQPG 534
Query: 66 -------DVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
D L PSKV R + E Y N L E + G +SGP
Sbjct: 535 SASSEPFDSLESAVPSKV---RRVGELVRYLNANPVGGLLEYARSHGFAAEFKLVDQSGP 591
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L +++ A
Sbjct: 592 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGESEKA 638
>gi|72383017|ref|YP_292372.1| RNAse III [Prochlorococcus marinus str. NATL2A]
gi|72002867|gb|AAZ58669.1| RNAse III [Prochlorococcus marinus str. NATL2A]
Length = 247
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHG--PVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK+ LQE + GL +P+Y T+ H F C V + S K+ KQA+KNA
Sbjct: 173 YKSALQELTQSKGLSIPIYKTIEIDKKHDNPKRFFCNVYVKNRSIAEGSGKSIKQAEKNA 232
Query: 146 A 146
A
Sbjct: 233 A 233
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ Q+ +LP Y +RE GPDH F+ + G + ++AE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 61 AEVALDVLS 69
A+ AL L+
Sbjct: 226 AKEALTQLA 234
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + LP Y TVR SGP H VF + + GV ++KK+A++ AA
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAA 226
Query: 147 LAAWSAL 153
A + L
Sbjct: 227 KEALTQL 233
>gi|308235889|ref|ZP_07666626.1| ribonuclease III [Gardnerella vaginalis ATCC 14018 = JCM 11026]
Length = 309
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 228 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHESGDELLGEADGSSKRKAQL 287
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 288 AAADKAWHVLDRRRKSSGESGN 309
>gi|13591904|ref|NP_112268.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
gi|1706533|sp|P55266.1|DSRAD_RAT RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA
gi|755817|gb|AAA65039.1| double-stranded RNA-specific adenosine deaminase [Rattus
norvegicus]
Length = 1175
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF S + S + A+ AAE A+ L ++
Sbjct: 587 KEGPAHDPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALQEEAANSADDQSGGA 645
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 646 NTDSLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 702
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 703 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 745
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYEDL 238
>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
Length = 241
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGP--VFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE S GL LP Y T HG F C V + G + +++K+A++NAA
Sbjct: 165 KTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQGRNLAEAKGRSRKEAEQNAA 224
Query: 147 LAAWSALK 154
AA AL+
Sbjct: 225 TAALQALE 232
>gi|149048041|gb|EDM00617.1| adenosine deaminase, RNA-specific, isoform CRA_b [Rattus
norvegicus]
Length = 1175
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF S + S + A+ AAE A+ L ++
Sbjct: 587 KEGPAHDPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALQEEAANSADDQSGGA 645
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 646 NTDSLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 702
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 703 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 745
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYEDL 238
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYEDL 238
>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
Length = 174
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LLQE GL LP Y + S GP H PVF +V G + TGE A +K+ A+ AA
Sbjct: 104 KTLLQEYMLSQGLPLPHYELLSSDGPSHAPVFRVSVTTMGHTGTGE-AGSKRLAESAAAT 162
Query: 148 AAWSALKKQAKS 159
A L + S
Sbjct: 163 ALLKHLGQNVAS 174
>gi|417556075|ref|ZP_12207135.1| ribonuclease III [Gardnerella vaginalis 315-A]
gi|333603099|gb|EGL14521.1| ribonuclease III [Gardnerella vaginalis 315-A]
Length = 301
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 220 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHENGDELLGEADGSSKRKAQL 279
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 280 AAADKAWHVLDRRRKSSGESGN 301
>gi|326915415|ref|XP_003204013.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Meleagris gallopavo]
Length = 545
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 5 QLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA 64
+L QR+ + L GP H P F V + + + + T S AA +
Sbjct: 8 KLNSYCQRNKYKLDYIDVDMRGPSHDPEFTVTVRIDNKEYGTGTGKSKKDAKAAAAKKTW 67
Query: 65 LDVLSKKG-PSKV---------LAARVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGP 113
++ K+G PS V L VL T Y +LL + S R L+L Y + R+G
Sbjct: 68 DMIVQKQGSPSNVHAPDPVTSPLPVDVL-PTFDYVSLLNKYSQRT-LQLVDYNNINRTGD 125
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFS 167
H P++SC+ ++G + + A++ AA A+ L++Q S S + S
Sbjct: 126 AHAPMYSCSCTISGHVYGNGIGNSLAAAKQAAAKEAYRVLREQEPSRLKSENSS 179
>gi|432958614|ref|XP_004086071.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 645
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 89 KNLLQETSH-RAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
KN L++ + R GL+ YT +R SGP H P+F VE+ G F G TKK+A+ +AA
Sbjct: 57 KNALEQLNELRPGLQ---YTLLRQSGPVHAPLFVMQVEVDGRFFQGA-GLTKKKAKLSAA 112
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLATLKGPETNNSQREHRTI 206
A +L + +A + S P+ T+D D I + L GP + S +T
Sbjct: 113 EQALQSLLQVCSTAQAPRRLSVPT--DFTSDPSDIPSILSKASELSGPNDDLSDPGLQTP 170
Query: 207 GVSASIRREVIPYGDAR 223
+S+S + V+ R
Sbjct: 171 PISSSPKNSVMLLNKMR 187
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 42.4 bits (98), Expect = 0.70, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 78 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 136
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 137 AQFAINQLTHR 147
>gi|407784395|ref|ZP_11131544.1| ribonuclease III [Celeribacter baekdonensis B30]
gi|407204097|gb|EKE74078.1| ribonuclease III [Celeribacter baekdonensis B30]
Length = 227
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P Y+ I R+GPDHAP F V +GET +S ++ RQAE A
Sbjct: 159 KTALQEWAQARGQKPPKYTEISRKGPDHAPVFTIEVTLESGETAQSE--ATSKRQAEQAV 216
Query: 61 AEVALDVLSKK 71
A+ L L K
Sbjct: 217 AKALLTKLEAK 227
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G K P YT + R GP H PVF+ V L A +K+QA++ A
Sbjct: 159 KTALQEWAQARGQKPPKYTEISRKGPDHAPVFTIEVTLESGETAQSEATSKRQAEQAVAK 218
Query: 148 AAWSALK 154
A + L+
Sbjct: 219 ALLTKLE 225
>gi|311115015|ref|YP_003986236.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
gi|385801363|ref|YP_005837766.1| ribonuclease III [Gardnerella vaginalis HMP9231]
gi|415706928|ref|ZP_11461775.1| ribonuclease III [Gardnerella vaginalis 0288E]
gi|310946509|gb|ADP39213.1| ribonuclease III [Gardnerella vaginalis ATCC 14019]
gi|333393441|gb|AEF31359.1| ribonuclease III [Gardnerella vaginalis HMP9231]
gi|388053928|gb|EIK76873.1| ribonuclease III [Gardnerella vaginalis 0288E]
Length = 298
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 217 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHESGDELLGEADGSSKRKAQL 276
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 277 AAADKAWHVLDRRRKSSGESGN 298
>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
Length = 226
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGE 42
YK LQEL QR + Y + +GPDHA RF V+ NGE
Sbjct: 155 YKTALQELVQRESGQVLKYRLVGSQGPDHAKRFFVDVDLNGE 196
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYENL 238
>gi|295396031|ref|ZP_06806215.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
gi|294971119|gb|EFG47010.1| ribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
Length = 230
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE A Y EGPDHA F AV + GET + ++ + AE AA
Sbjct: 155 YKTTLQEAAADLSLGAVHYDVTGEGPDHARVF-TAVAYLGETRWASGEGTSKKNAELVAA 213
Query: 62 EVALDVLSKKGPS 74
E+A+ + +K P
Sbjct: 214 EIAVKKILEKYPG 226
>gi|359767990|ref|ZP_09271770.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|378717492|ref|YP_005282381.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
gi|359314567|dbj|GAB24603.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|375752195|gb|AFA73015.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
Length = 243
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G P Y +GP H F+ +AG S +TKK+A++ AA
Sbjct: 171 WKTSLQELTAEHGFGPPQYQVSSTGPDHNKEFTAVAVVAGESVGEGVGRTKKEAEQKAAA 230
Query: 148 AAWSALKKQAKSA 160
AW L +A ++
Sbjct: 231 LAWQTLTDRAGAS 243
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYEGL 238
>gi|415703380|ref|ZP_11459258.1| ribonuclease III [Gardnerella vaginalis 284V]
gi|415704969|ref|ZP_11460240.1| ribonuclease III [Gardnerella vaginalis 75712]
gi|388051691|gb|EIK74715.1| ribonuclease III [Gardnerella vaginalis 75712]
gi|388052840|gb|EIK75855.1| ribonuclease III [Gardnerella vaginalis 284V]
Length = 298
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 217 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHESGDELLGEADGSSKRKAQL 276
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 277 AAADKAWHVLDRRRKSSGESGN 298
>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
Length = 236
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVY-TTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+LLQE + +A LP Y T GP H VF + + G+ K+KK+A+++AA
Sbjct: 167 YKSLLQEFTQQAFKCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMGKSKKEAEQHAA 226
Query: 147 LAAWSAL 153
A+ L
Sbjct: 227 KEAFLRL 233
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y ++E GP H F + V NGE T S ++AE A
Sbjct: 176 FKSQLQELVQRDSAGTIEYGILQEKGPAHNREFVSRVCLNGEELGIGTGRSK-KEAEQHA 234
Query: 61 AEVALDVLSKK 71
A++AL+ L K
Sbjct: 235 AQMALEKLKNK 245
>gi|402820690|ref|ZP_10870256.1| hypothetical protein IMCC14465_14900 [alpha proteobacterium
IMCC14465]
gi|402510490|gb|EJW20753.1| hypothetical protein IMCC14465_14900 [alpha proteobacterium
IMCC14465]
Length = 237
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE + R GL LP Y + +GP H PV S V L + A +KK+A+ AA
Sbjct: 164 KSDLQEYTSREGLGLPTYKVIDTTGPDHAPVISVEVALDNGTRVCAQAGSKKKAEIEAAQ 223
Query: 148 AAWSALK 154
+ LK
Sbjct: 224 SLLEVLK 230
>gi|419550405|ref|ZP_14088911.1| ribonuclease III [Campylobacter coli 2688]
gi|419553745|ref|ZP_14091902.1| ribonuclease III [Campylobacter coli 2698]
gi|380530677|gb|EIA55739.1| ribonuclease III [Campylobacter coli 2688]
gi|380533733|gb|EIA58640.1| ribonuclease III [Campylobacter coli 2698]
Length = 224
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ NG+ + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|226371684|ref|NP_001033676.2| double-stranded RNA-specific adenosine deaminase isoform 2 [Mus
musculus]
Length = 930
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 342 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 400
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 401 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 457
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 458 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 500
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ NG+ + ++A+ A
Sbjct: 156 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 214
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 215 AKITLEKL 222
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE A LP+Y + R GP HAPRF+ V G T E T R+AE AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEG--LAGTKREAEQNAA 213
Query: 62 EVALDVL 68
L+ L
Sbjct: 214 RDLLEQL 220
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE + G LP Y V R+GP H P F V +AG + G A TK++A++NAA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEG-LAGTKREAEQNAA 213
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVL 68
A+ A++ L
Sbjct: 219 AQFAINKL 226
>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|419537870|ref|ZP_14077235.1| ribonuclease III [Campylobacter coli 90-3]
gi|419540283|ref|ZP_14079521.1| ribonuclease III [Campylobacter coli Z163]
gi|419544520|ref|ZP_14083476.1| ribonuclease III [Campylobacter coli 2553]
gi|419546878|ref|ZP_14085623.1| ribonuclease III [Campylobacter coli 2680]
gi|419549476|ref|ZP_14088066.1| ribonuclease III [Campylobacter coli 2685]
gi|419553184|ref|ZP_14091447.1| ribonuclease III [Campylobacter coli 2692]
gi|419555536|ref|ZP_14093549.1| ribonuclease III [Campylobacter coli 84-2]
gi|419557967|ref|ZP_14095857.1| ribonuclease III [Campylobacter coli 80352]
gi|419560500|ref|ZP_14098141.1| ribonuclease III [Campylobacter coli 86119]
gi|419562240|ref|ZP_14099759.1| ribonuclease III [Campylobacter coli 1091]
gi|419565239|ref|ZP_14102588.1| ribonuclease III [Campylobacter coli 1098]
gi|419566594|ref|ZP_14103848.1| ribonuclease III [Campylobacter coli 1148]
gi|419569978|ref|ZP_14107033.1| ribonuclease III [Campylobacter coli 7--1]
gi|419571931|ref|ZP_14108869.1| ribonuclease III [Campylobacter coli 132-6]
gi|419574263|ref|ZP_14111024.1| ribonuclease III [Campylobacter coli 1891]
gi|419575098|ref|ZP_14111795.1| ribonuclease III [Campylobacter coli 1909]
gi|419577226|ref|ZP_14113783.1| ribonuclease III [Campylobacter coli 59-2]
gi|419579706|ref|ZP_14116108.1| ribonuclease III [Campylobacter coli 1948]
gi|419581745|ref|ZP_14118035.1| ribonuclease III [Campylobacter coli 1957]
gi|419591030|ref|ZP_14126389.1| ribonuclease III [Campylobacter coli 37/05]
gi|419592712|ref|ZP_14127956.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|419595070|ref|ZP_14130184.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|419596512|ref|ZP_14131515.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|419599217|ref|ZP_14134083.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|419600989|ref|ZP_14135725.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|419602764|ref|ZP_14137338.1| ribonuclease III [Campylobacter coli 151-9]
gi|419604007|ref|ZP_14138482.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|419606995|ref|ZP_14141345.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|419608702|ref|ZP_14142887.1| ribonuclease III [Campylobacter coli H6]
gi|419611039|ref|ZP_14145088.1| ribonuclease III [Campylobacter coli H8]
gi|419612541|ref|ZP_14146417.1| ribonuclease III [Campylobacter coli H9]
gi|419614811|ref|ZP_14148580.1| ribonuclease III [Campylobacter coli H56]
gi|419617063|ref|ZP_14150694.1| ribonuclease III [Campylobacter coli Z156]
gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|380517237|gb|EIA43356.1| ribonuclease III [Campylobacter coli Z163]
gi|380519417|gb|EIA45495.1| ribonuclease III [Campylobacter coli 90-3]
gi|380521629|gb|EIA47349.1| ribonuclease III [Campylobacter coli 2680]
gi|380525099|gb|EIA50654.1| ribonuclease III [Campylobacter coli 2553]
gi|380525687|gb|EIA51192.1| ribonuclease III [Campylobacter coli 2685]
gi|380529448|gb|EIA54604.1| ribonuclease III [Campylobacter coli 2692]
gi|380535994|gb|EIA60660.1| ribonuclease III [Campylobacter coli 84-2]
gi|380536990|gb|EIA61575.1| ribonuclease III [Campylobacter coli 86119]
gi|380540084|gb|EIA64409.1| ribonuclease III [Campylobacter coli 1098]
gi|380540610|gb|EIA64910.1| ribonuclease III [Campylobacter coli 80352]
gi|380541447|gb|EIA65709.1| ribonuclease III [Campylobacter coli 1091]
gi|380545945|gb|EIA69908.1| ribonuclease III [Campylobacter coli 1148]
gi|380548527|gb|EIA72429.1| ribonuclease III [Campylobacter coli 7--1]
gi|380549901|gb|EIA73629.1| ribonuclease III [Campylobacter coli 1891]
gi|380552684|gb|EIA76239.1| ribonuclease III [Campylobacter coli 132-6]
gi|380554296|gb|EIA77773.1| ribonuclease III [Campylobacter coli 1909]
gi|380556681|gb|EIA79925.1| ribonuclease III [Campylobacter coli 1948]
gi|380557699|gb|EIA80902.1| ribonuclease III [Campylobacter coli 59-2]
gi|380558478|gb|EIA81656.1| ribonuclease III [Campylobacter coli 1957]
gi|380569220|gb|EIA91667.1| ribonuclease III [Campylobacter coli 37/05]
gi|380571779|gb|EIA94137.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|380574438|gb|EIA96541.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|380575832|gb|EIA97900.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|380575953|gb|EIA98015.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|380580494|gb|EIB02242.1| ribonuclease III [Campylobacter coli 151-9]
gi|380580987|gb|EIB02719.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|380582338|gb|EIB04002.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|380585061|gb|EIB06434.1| ribonuclease III [Campylobacter coli H6]
gi|380586154|gb|EIB07466.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|380588981|gb|EIB10066.1| ribonuclease III [Campylobacter coli H8]
gi|380590213|gb|EIB11238.1| ribonuclease III [Campylobacter coli H9]
gi|380592232|gb|EIB13144.1| ribonuclease III [Campylobacter coli H56]
gi|380594164|gb|EIB14970.1| ribonuclease III [Campylobacter coli Z156]
Length = 224
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ NG+ + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQEL-ARAIAGNKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|423074940|ref|ZP_17063660.1| ribonuclease III [Desulfitobacterium hafniense DP7]
gi|361854146|gb|EHL06251.1| ribonuclease III [Desulfitobacterium hafniense DP7]
Length = 262
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQG-NLRGKGIGRTKKEAEQRAA 249
Query: 62 EVALD 66
+ LD
Sbjct: 250 QQVLD 254
>gi|328948083|ref|YP_004365420.1| ribonuclease 3 [Treponema succinifaciens DSM 2489]
gi|328448407|gb|AEB14123.1| Ribonuclease 3 [Treponema succinifaciens DSM 2489]
Length = 248
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LLQE + P Y+ VR +GP H +F +V+L V + K KK A++ AA
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKLGDVVYGPASGKNKKSAEQAAA 238
Query: 147 LAAWSAL 153
A AL
Sbjct: 239 GVACKAL 245
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q+ PSYS +R GPDH F +V G+ P + AE AA
Sbjct: 179 YKTLLQEFYQKKTNACPSYSLVRTTGPDHDRIFYVSVKL-GDVVYGPASGKNKKSAEQAA 237
Query: 61 AEVALDVL 68
A VA L
Sbjct: 238 AGVACKAL 245
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL+Q P+Y + R GP+H F V + +TF P + AE A
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTF-GPGMGKNKKTAEQEA 214
Query: 61 AEVALDVLSK 70
A +A D LS+
Sbjct: 215 ARIAYDALSQ 224
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 67 VLSKKGPSKVLAARVLDETG--VYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTV 123
V S+ GP RVLD YK+LLQE S K P Y + RSGP H F V
Sbjct: 136 VSSRIGPE---IKRVLDNRHHRDYKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEV 192
Query: 124 ELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+ +F K KK A++ AA A+ AL
Sbjct: 193 TVDDKTFGPGMGKNKKTAEQEAARIAYDAL 222
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +V L + ++K + ++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQTF 207
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
S +AG+S KK A++ AA A L++
Sbjct: 208 SAVATVAGLSVGNGQGHNKKLAEQQAAQEACQTLRE 243
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y ++E GP H+ F + V+ +G + T S ++AE A
Sbjct: 176 FKSQLQELVQRDGAGAIEYKILQEKGPAHSREFVSRVSLSGNELGTGTGRSK-KEAEQHA 234
Query: 61 AEVALDVL 68
A++AL++L
Sbjct: 235 AQMALEIL 242
>gi|74188545|dbj|BAE28026.1| unnamed protein product [Mus musculus]
Length = 930
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 342 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 400
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 401 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 457
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 458 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 500
>gi|219669830|ref|YP_002460265.1| ribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|219540090|gb|ACL21829.1| Ribonuclease III [Desulfitobacterium hafniense DCB-2]
Length = 262
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQG-NLRGKGIGRTKKEAEQRAA 249
Query: 62 EVALD 66
+ LD
Sbjct: 250 QQVLD 254
>gi|441509918|ref|ZP_20991830.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
gi|441445933|dbj|GAC49791.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
Length = 261
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA + P Y GPDH+ F A GE T ++AE AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEEL-GEGIGRTKKEAEQKAA 245
Query: 62 EVALDVLSKKGPS 74
+A L+++G +
Sbjct: 246 SLAWQALTERGAA 258
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G P Y +GP H F+ +AG +TKK+A++ AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGIGRTKKEAEQKAAS 246
Query: 148 AAWSALKKQAKS 159
AW AL ++ +
Sbjct: 247 LAWQALTERGAA 258
>gi|115377692|ref|ZP_01464885.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|310821555|ref|YP_003953913.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115365298|gb|EAU64340.1| ribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|309394627|gb|ADO72086.1| Ribonuclease III [Stigmatella aurantiaca DW4/3-1]
Length = 240
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE AQ P Y + E GPDH F+ V+ E + T ++AE AA
Sbjct: 167 YKTKLQEDAQTRLKVPPRYRVVAEAGPDHEKTFEVEVSIGSELYARAT-GRNKKEAEQAA 225
Query: 61 AEVALDVLSK 70
A LD+L K
Sbjct: 226 ARATLDMLRK 235
>gi|23238148|ref|NP_694466.1| Vp8 [Kadipiro virus]
gi|3850247|gb|AAC72049.1| Vp8 [Kadipiro virus]
Length = 302
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL+LPVY + + GP H P + + G+ E A ++ QA+K AA
Sbjct: 5 KGMLQELCVKRGLELPVYEKLSKVGPDHAPTITVKLTANGIEVI-EAASSRAQAEKLAAA 63
Query: 148 AAWSALK 154
+ +K
Sbjct: 64 TLYEKMK 70
>gi|414173889|ref|ZP_11428516.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
gi|410890523|gb|EKS38322.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
Length = 268
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL PVY V R+GP H P F VEL G++ +K+ A+K L
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEK---L 251
Query: 148 AAWSALKKQ 156
AA + LK++
Sbjct: 252 AATALLKRE 260
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K QLQE+ QR L Y + E GP H F+A V NG+ T T +QAE A
Sbjct: 160 FKTQLQEIVQRDRDVLIQYDILGETGPAHNKAFEAQVVVNGQVLGKGT-GRTKKQAEQNA 218
Query: 61 AEVAL 65
AE A+
Sbjct: 219 AEYAI 223
>gi|89895402|ref|YP_518889.1| hypothetical protein DSY2656 [Desulfitobacterium hafniense Y51]
gi|89334850|dbj|BAE84445.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 262
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVTYRILAEEGPDHNKRFTAGVFLQG-NLRGKGIGRTKKEAEQRAA 249
Query: 62 EVALD 66
+ LD
Sbjct: 250 QQVLD 254
>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
Length = 222
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q + P Y + GPDH +F+ A+ G+ F + + ++A+
Sbjct: 153 YKTKLQEITQANMAGTPEYIVVNAFGPDHKKQFEIAIKIQGKEF-ARAIAGSKKEAQQQC 211
Query: 61 AEVALDVLSK 70
A++AL+ L K
Sbjct: 212 AKIALEKLGK 221
>gi|254455346|ref|ZP_05068775.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
gi|207082348|gb|EDZ59774.1| ribonuclease III [Candidatus Pelagibacter sp. HTCC7211]
Length = 220
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 92 LQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
LQE + + KLP+Y + +GP H P+F V+L + K+KK A++NAA+
Sbjct: 157 LQELALKNFKKLPIYKLISNTGPRHKPLFKVGVKLPNTKYFIALGKSKKDAEQNAAIECL 216
Query: 151 SALK 154
+K
Sbjct: 217 KNVK 220
>gi|356511271|ref|XP_003524350.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1180
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
YKN LQ +RAG P Y T F TV G++F G+P +KK A+K+AA
Sbjct: 1083 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRSTVIFNGLNFVGQPCSSKKLAEKSAAA 1139
Query: 148 AAWSALKKQAKSA 160
A LK + S+
Sbjct: 1140 EALLWLKGDSHSS 1152
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q + P Y + GPDH F+ AV + +T + S + A+ A
Sbjct: 155 YKTALQELTQATHAVTPGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGKSK-KDAQQKA 213
Query: 61 AEVALDVLSK 70
A++AL+ L K
Sbjct: 214 AKIALEALKK 223
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 44 FESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKL 103
FE+ L A E+++ +L + P L + D YK LQE +
Sbjct: 115 FEAIIGAVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKD----YKTALQELTQATHAVT 170
Query: 104 PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
P Y + SGP H F V L + K+KK AQ+ AA A ALKK
Sbjct: 171 PGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALKK 223
>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
Length = 234
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q+ P Y I E GPDH+ F V FN + T S+ ++A+ A
Sbjct: 167 YKTTLQEMIQKRSNARPEYYVIEEKGPDHSKEFTVEVKFNDRSLGEGT-GSSKKEAQQQA 225
Query: 61 AEVALDVL 68
A+ AL L
Sbjct: 226 AKNALKKL 233
>gi|431794580|ref|YP_007221485.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784806|gb|AGA70089.1| ribonuclease III [Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 262
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK LQE AQR + EGPDH RF A V G + T ++AE AA
Sbjct: 191 YKTMLQEKAQREETEVSYRILAEEGPDHNKRFTAGVYLQG-SLRGKGSGRTKKEAEQRAA 249
Query: 62 EVALD 66
+ LD
Sbjct: 250 QQVLD 254
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+LLQE AG P+Y T+ SG H F V + G K K++A++ AA
Sbjct: 162 KSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQEAEQKAAQ 221
Query: 148 AAWSAL 153
A AL
Sbjct: 222 KALDAL 227
>gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
Length = 276
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA PSY GPDHA F A +G+ T S+ + AEH AA
Sbjct: 174 WKTSLQELAAVHRLGSPSYRVTSVGPDHARVFTAVAVVDGQERGEGT-GSSKKVAEHDAA 232
Query: 62 EVA 64
E A
Sbjct: 233 EAA 235
>gi|88856701|ref|ZP_01131356.1| ribonuclease III [marine actinobacterium PHSC20C1]
gi|88813998|gb|EAR23865.1| ribonuclease III [marine actinobacterium PHSC20C1]
Length = 233
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
K LQELA + +P Y GPDH+ RF A++ + + + T S +QAE AAA
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGTGSSK-KQAEMAAAL 222
Query: 63 VALDVL 68
A +L
Sbjct: 223 EAWTIL 228
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + + G +P Y SGP H F ++ L+ +KKQA+ AAL
Sbjct: 164 KTSLQELAAQLGRGVPDYRIEDSGPDHSKRFHASLVLSNDVIATGTGSSKKQAEMAAALE 223
Query: 149 AWSALKKQAK 158
AW+ L+ AK
Sbjct: 224 AWTILQAAAK 233
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYENL 238
>gi|359424778|ref|ZP_09215889.1| ribonuclease III [Gordonia amarae NBRC 15530]
gi|358239922|dbj|GAB05471.1| ribonuclease III [Gordonia amarae NBRC 15530]
Length = 274
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 66 DVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVEL 125
DV+ K G K+ A LD +K LQE S L P Y +GP H F+ T +
Sbjct: 156 DVIGKAG--KLGAG--LD----WKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIV 207
Query: 126 AGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSES 173
G ++KK+A++ AA AW L +A A ++ + + ES
Sbjct: 208 GGEEMGTGVGRSKKEAEQKAAALAWEELNNRATGAGDTAPENSAADES 255
>gi|88608789|ref|YP_506782.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600958|gb|ABD46426.1| ribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 222
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE G+K P+Y + RSGP H P+F + + G K+KK ++NAA
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVDGKKRRA-TGKSKKLGEENAAR 211
Query: 148 AAWSALKKQAK 158
LK + +
Sbjct: 212 MMLEELKAETR 222
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K+ LQE + GL P Y +GP H FS TV + + +TKK+A+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 148 AAWSALKK 155
+A+ L +
Sbjct: 222 SAYKTLDE 229
>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
Length = 673
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 6 LQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
L EL + +N+ + GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 100 LNELKTGATYNVVGQT----GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 153
>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
Length = 259
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNG 41
K+ LQE A +P+Y+ + R GPDHAPRF+ AV G
Sbjct: 180 KSALQEWAMGRSLPIPTYAVVERTGPDHAPRFRIAVQVEG 219
>gi|415715935|ref|ZP_11466241.1| ribonuclease III [Gardnerella vaginalis 1400E]
gi|388057752|gb|EIK80566.1| ribonuclease III [Gardnerella vaginalis 1400E]
Length = 306
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 225 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHENGDELLGEADGSSKRKAQL 284
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 285 AAADKAWHMLDRRRKSSGESGN 306
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYENL 238
>gi|414167173|ref|ZP_11423402.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
gi|410890990|gb|EKS38788.1| ribonuclease 3 [Afipia clevelandensis ATCC 49720]
Length = 268
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL PVY V R+GP H P F VEL G++ +K+ A+K L
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEK---L 251
Query: 148 AAWSALKKQA 157
AA + LK++
Sbjct: 252 AATALLKQEG 261
>gi|357384164|ref|YP_004898888.1| ribonuclease III [Pelagibacterium halotolerans B2]
gi|351592801|gb|AEQ51138.1| ribonuclease III [Pelagibacterium halotolerans B2]
Length = 235
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYT-TVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE + GL+ P Y T RSGP H PVF+ +V + G +KK A+ AA
Sbjct: 163 KTALQEWAQAKGLEPPAYVETARSGPDHAPVFTISVSVRGFEAITATGTSKKLAEHQAA 221
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 3 KNQLQELAQRSCFNLPSY-SCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQ-AEHAA 60
K LQE AQ P+Y R GPDHAP F +V+ G FE+ T T ++ AEH A
Sbjct: 163 KTALQEWAQAKGLEPPAYVETARSGPDHAPVFTISVSVRG--FEAITATGTSKKLAEHQA 220
Query: 61 AE 62
AE
Sbjct: 221 AE 222
>gi|415721972|ref|ZP_11468860.1| ribonuclease III [Gardnerella vaginalis 00703Bmash]
gi|415723281|ref|ZP_11469455.1| ribonuclease III [Gardnerella vaginalis 00703C2mash]
gi|388060136|gb|EIK82835.1| ribonuclease III [Gardnerella vaginalis 00703Bmash]
gi|388063731|gb|EIK86300.1| ribonuclease III [Gardnerella vaginalis 00703C2mash]
Length = 298
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEP-AKTKKQAQK 143
+K L +H GL P Y SGP + PVF LA G GE +K++AQ
Sbjct: 217 WKTSLTVLAHEMGLDEPQYRMSVSGPDYAPVFHARAVLAHESGDELLGEADGSSKRKAQL 276
Query: 144 NAALAAWSALKKQAKSAFSSSS 165
AA AW L ++ KS+ S +
Sbjct: 277 AAADKAWHVLDRRRKSSGESGN 298
>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
29799]
gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
Length = 223
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNG 41
YK LQEL QR + +Y + GPDHA RF+ V NG
Sbjct: 155 YKTALQELVQRESGQVLAYRLVGSTGPDHAKRFQVEVELNG 195
>gi|338974857|ref|ZP_08630213.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
gi|338231952|gb|EGP07086.1| ribonuclease III [Bradyrhizobiaceae bacterium SG-6C]
Length = 268
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL PVY V R+GP H P F VEL G++ +K+ A+K L
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAEK---L 251
Query: 148 AAWSALKKQA 157
AA + LK++
Sbjct: 252 AATALLKQEG 261
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K+ LQE + GL P Y +GP H FS TV + + +TKK+A+ AA
Sbjct: 162 WKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATVVIGEAEYGHGVGRTKKEAELKAAA 221
Query: 148 AAWSALKK 155
+A+ L +
Sbjct: 222 SAYKTLDE 229
>gi|82698022|gb|ABB89048.1| polyprotein [Rosy apple aphid virus]
Length = 2618
Score = 41.6 bits (96), Expect = 1.1, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 104 PVYTTVRSGPGHGPVFSCTVELAGVSFTGE-PAKTKKQAQKNAALAAW------------ 150
P+ R+GP H P +SCTV AG F GE P+K + Q AL +
Sbjct: 2167 PIEHFERTGPPHNPTYSCTVTYAGRDFGGEGPSKASSKTQAYGALRQYLEDHIVCNAACE 2226
Query: 151 ----SALKKQAKSAFSSSSF 166
AL+K K A ++ SF
Sbjct: 2227 DQRTEALQKIRKVAITAFSF 2246
>gi|163793042|ref|ZP_02187018.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181688|gb|EDP66200.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 227
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + L LPVYTTV ++GP H P F+ V + G++ K+K+ A++ AA
Sbjct: 160 KTGLQEWAQGRRLPLPVYTTVEQTGPAHAPEFTVEVVVEGLAPQRASGKSKRLAEQLAAA 219
Query: 148 AAWSAL 153
A A+
Sbjct: 220 AMLEAI 225
>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium gilvum Spyr1]
gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium gilvum Spyr1]
Length = 234
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K+ LQE + L P Y +GP H F+ V +A +TKK+A+ AA
Sbjct: 162 WKSSLQELTASLALGAPSYHVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELKAAS 221
Query: 148 AAWSALKK 155
AAW+AL++
Sbjct: 222 AAWNALQR 229
>gi|211956314|ref|YP_002302383.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
gi|115503109|gb|ABI99027.1| DsRNA binding PKR inhibitor [Deerpox virus W-1170-84]
Length = 199
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 25/167 (14%)
Query: 10 AQRSCFNLPSYSCIREG-----PDHAPR-FKAAVNFNGETFESPTFCSTLRQAEHAAAEV 63
++S N Y EG P + PR FK T E S + + E+
Sbjct: 43 VEKSYINRQLYKLYHEGLLNVIPTNPPRWFKKTC-----TKEEEDVMSVIVETNTYLDEL 97
Query: 64 ALDVLSKKGPS---------KVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPG 114
++ + K P K+LA + + V Q TS + + + SGP
Sbjct: 98 DIETMGKNNPELFGDTIPYEKILAWKDKNPCSVLNEYCQYTSRDWYIDI-----ISSGPI 152
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
H P+F+ T+ ++GV F TKK+A+ NA A + + F
Sbjct: 153 HKPLFTATLCISGVKFRSAIGSTKKEAKTNATRMAMDLIINNSIIKF 199
>gi|348545937|ref|XP_003460435.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like, partial [Oreochromis niloticus]
Length = 420
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPP 169
R GP H P+F +++ + K+ K+A++NAA AWSAL++Q+ S S
Sbjct: 47 RDGPSHKPLFFYKLKIDNKEYPVGEGKSIKEAKQNAAELAWSALQEQSDWD-SKVSIRST 105
Query: 170 SSESGTNDEQDQAIIARYLATLKGPE 195
+SE G + ++ ++L+ E
Sbjct: 106 ASEDGASLVSLAQLVIQFLSDFNSIE 131
>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 227
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 44 FESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKL 103
FE+ L A +A+ +L + P + A D +K LQE +
Sbjct: 116 FEAIIGALYLEAGLEKARTLAISLLEEAYPKIDMDAIFRD----HKTTLQELTQAHFGVT 171
Query: 104 PVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
P Y VRS GP H F V + G + K+KK+AQ+ AAL A LKK+
Sbjct: 172 PEYRLVRSFGPDHQKEFEIAVSVRGSDLSLASGKSKKEAQQKAALLALEILKKE 225
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y GP H VF+ V + G + +KK+A++ AA
Sbjct: 170 WKTSLQELTAAQHLGVPFYDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQRAAQ 229
Query: 148 AAWSALKKQAKSA 160
AW +++ A
Sbjct: 230 EAWLRIRRSVDGA 242
>gi|408791618|ref|ZP_11203228.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463028|gb|EKJ86753.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 242
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q+ LP YS ++ EGPDH F +V + F++ R+AE A
Sbjct: 173 YKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLE-KNFQATGEGKNKRRAEQMA 231
Query: 61 AEVALDVL 68
A+ AL L
Sbjct: 232 AKAALRFL 239
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 83 DETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVEL-AGVSFTGEPAKTKKQ 140
+ET YK +LQE + KLP Y+ ++ GP H F +V L TGE K K++
Sbjct: 168 EETKDYKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEKNFQATGE-GKNKRR 226
Query: 141 AQKNAALAAWSALK 154
A++ AA AA LK
Sbjct: 227 AEQMAAKAALRFLK 240
>gi|20451016|ref|NP_620557.1| protein P1 [Acyrthosiphon pisum virus]
gi|2668620|gb|AAC58718.1| protein P1 [Acyrthosiphon pisum virus]
Length = 2630
Score = 41.6 bits (96), Expect = 1.3, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 104 PVYTTVRSGPGHGPVFSCTVELAGVSFTGE-PAKTKKQAQKNAAL 147
PV R+GP H P +SCTV AG F GE P+K + Q AL
Sbjct: 2179 PVEHFERAGPPHSPTYSCTVTYAGRHFGGEGPSKASAKTQAYGAL 2223
>gi|337287867|ref|YP_004627339.1| Ribonuclease 3 [Thermodesulfobacterium sp. OPB45]
gi|334901605|gb|AEH22411.1| Ribonuclease 3 [Thermodesulfobacterium geofontis OPF15]
Length = 237
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGET 43
YK QLQELAQ+ P Y + GP H P+F+ + NGE
Sbjct: 161 YKTQLQELAQKFYHKTPEYEILSVSGPSHNPKFEIGIKLNGEI 203
>gi|282856560|ref|ZP_06265833.1| double-stranded RNA-binding domain protein [Pyramidobacter
piscolens W5455]
gi|282585603|gb|EFB90898.1| double-stranded RNA-binding domain protein [Pyramidobacter
piscolens W5455]
Length = 365
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 24 REGPDHAPRFKAAVNFNGETF-------ESPTFCSTLRQAEHAAAEVALDVLSKKGPSKV 76
+EGP+H P F AA NG + + +R+ AAA +K+G
Sbjct: 26 KEGPEHKPVFTAAAFRNGARVAEAGGPSKKDALKALVREVGKAAARQ-----TKRGAD-- 78
Query: 77 LAARVLDETGV-----YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFT 131
A R L+ G+ K LQ R G+ P Y + S G P+F ++L+G
Sbjct: 79 -AFRDLELAGLKNSPELKGRLQTCCERLGIGQPHYVDLPSPGGKNPLFFVELQLSGEPIV 137
Query: 132 GEPAKTKKQAQKNAALAAWSALKKQAKSAFSSS 164
++K+ A + AAW L+ A A S
Sbjct: 138 NGSGQSKRAAGQA---AAWKMLQLLAADALGES 167
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE S R GL P Y V +GP H P ++ V + G ++KK A++ AA
Sbjct: 202 KTALQELSRRLGLGEPTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAAR 261
Query: 148 AAWSALKKQA 157
A + L++ A
Sbjct: 262 MALAGLEEPA 271
>gi|300780910|ref|ZP_07090764.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
gi|300532617|gb|EFK53678.1| ribonuclease III [Corynebacterium genitalium ATCC 33030]
Length = 252
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
+V DV+++ K+ A + + +K LQE G PVYT GP H +F+
Sbjct: 152 DVTRDVITRLFDDKIENAHWIQD---WKTELQERVAELGGNPPVYTATAKGPEHEQIFTA 208
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
V + GV + KK A++N+A A+ LK+
Sbjct: 209 EVAIDGVRRGVGRGQNKKTAEQNSAREAFFFLKEH 243
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K++L ELAQ+ P+Y I A + + V FNG F+ + C + AE AA
Sbjct: 245 FKSKLNELAQKRHLGTPTYQTIYS----AGGYLSTVVFNGREFKGMSPCMKKKDAEQNAA 300
Query: 62 EVALDVLS 69
VA +VLS
Sbjct: 301 FVAYNVLS 308
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 63 VALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCT 122
V L + + K + V++ R +D +K LQE +PVY+ +GP H F+
Sbjct: 155 VVLKLFAAKIDNAVVSGRHMD----WKTTLQELCAELKAAMPVYSATSTGPEHDQTFNAV 210
Query: 123 VELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+AG++ KK A++ AA A AL++
Sbjct: 211 ATVAGLTVGRGTGHNKKLAEQQAAEEACQALRE 243
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 42 ETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGL 101
+ ES L+ A V LD+ L LD +K LQE + G
Sbjct: 131 DGMESILGAIHLQHGIDTARRVVLDLFDDLLTRAPLLGAGLD----WKTSLQELTAEHGA 186
Query: 102 KLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
+PVY +GP H F+ TV ++ ++KK+A++ AA +AW + +
Sbjct: 187 GVPVYEITATGPDHDKEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWKTMSEN 241
>gi|356569842|ref|XP_003553104.1| PREDICTED: probable calcium-binding protein CML20-like [Glycine
max]
Length = 239
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAV 37
MYK +LQEL + + LP + +++GPDH P FK +
Sbjct: 1 MYKAKLQELCHQRKWGLPRHFAMKDGPDHIPSFKLLI 37
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +V L + ++K + ++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQTF 207
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+ +AG++ KK A++ AA A L++
Sbjct: 208 NAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|124026759|ref|YP_001015874.1| ribonuclease III [Prochlorococcus marinus str. NATL1A]
gi|123961827|gb|ABM76610.1| putative ribonuclease III [Prochlorococcus marinus str. NATL1A]
Length = 247
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHG--PVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK+ LQE + GL +P+Y T H F C V + S K+ KQA+KNA
Sbjct: 173 YKSALQELTQSKGLSIPIYKTTEIDKKHDNPERFFCNVYVKNRSIAEGSGKSMKQAEKNA 232
Query: 146 A 146
A
Sbjct: 233 A 233
>gi|356527870|ref|XP_003532529.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1177
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
YKN LQ +RAG P Y T F TV G++F G+P +KK A+K+AA
Sbjct: 1080 YKNHLQAFLNRAGHDSPTYKTKELKNNQ---FRTTVVFNGLNFVGQPCSSKKLAEKSAAA 1136
Query: 148 AAWSALKKQAKSA 160
A +K S+
Sbjct: 1137 EALLWIKGDGHSS 1149
>gi|254463926|ref|ZP_05077337.1| ribonuclease III [Rhodobacterales bacterium Y4I]
gi|206684834|gb|EDZ45316.1| ribonuclease III [Rhodobacterales bacterium Y4I]
Length = 225
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ +P Y + R GPDHAP F A T E+ + RQAE AAA
Sbjct: 159 KTSLQEWAQARGQQVPIYVEVSRSGPDHAPVFTIAARLQDGT-EAQATAGSKRQAEQAAA 217
Query: 62 EVALDVL 68
+ L+ L
Sbjct: 218 KALLEQL 224
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G ++P+Y V RSGP H PVF+ L + A +K+QA++ AA
Sbjct: 159 KTSLQEWAQARGQQVPIYVEVSRSGPDHAPVFTIAARLQDGTEAQATAGSKRQAEQAAAK 218
Query: 148 A 148
A
Sbjct: 219 A 219
>gi|291397874|ref|XP_002715382.1| PREDICTED: adenosine deaminase, RNA-specific [Oryctolagus
cuniculus]
Length = 1150
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FNL S GP H PRFK V +G F P + + A+ AA A+
Sbjct: 460 QFASQTCEFNLIEQS----GPPHEPRFKFQVVISGREF-PPAEAGSKKVAKQDAAMKAMT 514
Query: 67 VLSKKG---------------------------PSKVLAARVLDETGVYKNLLQETSHRA 99
+L ++ PS A + LL E H+
Sbjct: 515 ILLQEAKAKDSGKSEDSSCSSAEKNSEKAAEPQPSAPSAVPLFSGKSPVTTLL-ECVHKL 573
Query: 100 GLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159
G + GP H P F V + +F A +KK A++ AA A AL+++A +
Sbjct: 574 GSSCEFRLLSKEGPAHDPKFQYCVAVGSQTFPTASAPSKKVAKQMAAEEAMKALQEEAAN 633
Query: 160 AFSSSSFSPPSSESGTNDEQDQAI 183
+S S G+N E +A+
Sbjct: 634 PTASDDQS-----GGSNTESLEAL 652
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 63/160 (39%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF + + S + A+ AAE A+ L ++
Sbjct: 584 KEGPAHDPKFQYCVAVGSQTFPTASAPSK-KVAKQMAAEEAMKALQEEAANPTASDDQSG 642
Query: 73 --------------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
PSKV R + E Y N L E + G +SGP
Sbjct: 643 GSNTESLEALESGLPSKV---RKVGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 699
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 700 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 739
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +V L + ++K + ++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNATVSGRHLD----WKTTLQELCAELKAPMPVYSATSTGPEHDQTF 207
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+ +AG++ KK A++ AA A L++
Sbjct: 208 NAVATVAGLTVGNGVGHNKKLAEQQAAQEACQTLRE 243
>gi|358348435|ref|XP_003638252.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
gi|355504187|gb|AES85390.1| ATP-dependent RNA helicase A-like protein, partial [Medicago
truncatula]
Length = 333
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+LLQ RAG P Y T F VE G+ F G+P + K+ A+++AA+
Sbjct: 234 KSLLQTLLMRAGHSAPKYKTKHLKTNE---FRALVEFKGMQFVGKPKRNKQLAERDAAIE 290
Query: 149 AWSALKKQAKSAFSSSSFSPPS 170
A + L + +A SPP
Sbjct: 291 ALAWLTHTSDNAQPEDDKSPPD 312
>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
Length = 233
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 83 DETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTK--- 138
DE +K LLQET GL+ P Y + + GP H PVF ++GVS GE T
Sbjct: 147 DELRDWKTLLQETLQAEGLR-PTYRVISKQGPPHRPVF-----ISGVSVDGEEVATGRGS 200
Query: 139 --KQAQKNAALAAWSAL 153
KQ+++ AA AA L
Sbjct: 201 SIKQSEQAAARAALEIL 217
>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
Length = 262
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE S GL P Y +GP H F+ +AG S +TKK+A++ AA
Sbjct: 167 WKTSLQELSAEQGLGPPQYQISSTGPDHNKEFTAVAVVAGESLGNGVGRTKKEAEQQAAA 226
Query: 148 AAWSALKKQAKSAFSSSSFS--PPSSESGTND 177
AW L ++A + S S + P +S+S +D
Sbjct: 227 RAWKTLTERATAVGSPDSVASDPTASDSAVSD 258
>gi|406876301|gb|EKD25900.1| hypothetical protein ACD_79C01447G0004 [uncultured bacterium]
Length = 252
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+KNQLQEL Q P Y I +EGP+H F+ +V + + F + +++++AE
Sbjct: 170 FKNQLQELTQEKYQATPQYKLIGQEGPEHKKSFRVSV-YLKDIFITYGTSTSIKKAEQIC 228
Query: 61 AEVALDVL 68
++ AL++L
Sbjct: 229 SKNALNLL 236
>gi|419589670|ref|ZP_14125455.1| ribonuclease III [Campylobacter coli 317/04]
gi|380566873|gb|EIA89433.1| ribonuclease III [Campylobacter coli 317/04]
Length = 224
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
Length = 224
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH F+ A+N G+ + S+ ++A+ A
Sbjct: 155 YKTKLQEITQAKMGLTPEYETLRAFGPDHQKSFEIALNLEGKEM-ARAIASSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKLTLEKL 221
>gi|346991596|ref|ZP_08859668.1| ribonuclease III [Ruegeria sp. TW15]
Length = 225
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P+Y + R GPDHAP F A T E+ + RQAE AAA
Sbjct: 159 KTSLQEWAQARGQKPPAYVEVKRTGPDHAPIFTIAARLQDGT-EAQATAGSKRQAEQAAA 217
Query: 62 EVALDVLS 69
+ L+ LS
Sbjct: 218 KALLEQLS 225
>gi|227503342|ref|ZP_03933391.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227075845|gb|EEI13808.1| ribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 256
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
A +V L + ++K + ++ R LD +K LQE +PVY+ +GP H F
Sbjct: 152 ARDVILRLFAEKIDNASVSGRHLD----WKTTLQELCAELKAPMPVYSATATGPEHDQTF 207
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
S +AG++ KK A++ AA A L++
Sbjct: 208 SAVATVAGLTVGNGQGHNKKLAEQQAAQEACQTLRE 243
>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 234
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE +H+ G + P Y V RSGP H P F V +AGV + +K+ A+++AA
Sbjct: 162 KTALQEWAHQRGPEPPKYEVVDRSGPDHNPKFRIKVSIAGVDPSEGEGSSKRLAEQSAAT 221
Query: 148 A 148
A
Sbjct: 222 A 222
>gi|378550823|ref|ZP_09826039.1| hypothetical protein CCH26_12079 [Citricoccus sp. CH26A]
Length = 256
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K +QE + L Y +GP H VF+ T+ + GV + +KK+A++ AA
Sbjct: 175 WKTFIQEAAAGGNLGAIEYRMESTGPDHDKVFTATLVIGGVDYASASGGSKKEAERLAAA 234
Query: 148 AAWSAL--KKQAKSA 160
+W + QA+SA
Sbjct: 235 DSWERVSAAAQARSA 249
>gi|297852484|ref|XP_002894123.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297339965|gb|EFH70382.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG PVY T + F V G+ F G+P +KK A+K+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRAMVTFNGLDFMGKPCGSKKNAEKDAAHE 1158
Query: 149 AWSALKKQAKSAFS 162
A L+ ++KS+ +
Sbjct: 1159 ALLWLQGESKSSLN 1172
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQELA + +P Y GPDH F A GE + ++AE AA
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVI-GEEVLGEGVGHSKKEAEQRAA 231
Query: 62 EVALDVLSKK 71
EVA L ++
Sbjct: 232 EVAWTELDRR 241
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEP-AKTKKQAQKNAA 146
+K LQE + +P Y +GP H VF+ + G GE +KK+A++ AA
Sbjct: 173 WKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARA-VIGEEVLGEGVGHSKKEAEQRAA 231
Query: 147 LAAWSALKKQAKSA 160
AW+ L ++A+ A
Sbjct: 232 EVAWTELDRRAQVA 245
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGE 42
+K LQE +QR +PSY I+E GPDH F+ AV N E
Sbjct: 163 FKTILQEFSQREYKVIPSYEVIKEMGPDHRKSFEIAVKINDE 204
>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
Length = 246
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ S ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQELGVGVGRSK-KEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +QEL Q + P Y ++E GPDH F A V N E + S ++AE A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSK-KEAEQNA 220
Query: 61 AEVALDVLSK 70
A A LSK
Sbjct: 221 AHFAFQKLSK 230
>gi|71083743|ref|YP_266463.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91763221|ref|ZP_01265185.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|90101634|sp|Q4FLS9.1|RNC_PELUB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71062856|gb|AAZ21859.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|91717634|gb|EAS84285.1| ribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 222
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 92 LQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
LQE S + LP+Y + +GP H P+F V+L F +KK A++NAA
Sbjct: 157 LQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTAEGTSKKDAEQNAA 212
>gi|74192520|dbj|BAE43048.1| unnamed protein product [Mus musculus]
Length = 705
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 143 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 201
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 202 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 258
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 259 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 301
>gi|408828137|ref|ZP_11213027.1| ribonuclease III [Streptomyces somaliensis DSM 40738]
Length = 257
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 138 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 197
Query: 148 AAWSALK 154
AAW A++
Sbjct: 198 AAWRAIR 204
>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
Length = 240
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL+Q +P Y I E GPDH F++ ++ G E+ + ++AE A
Sbjct: 166 YKTTLQELSQNRFREIPRYRLIGEYGPDHDKLFESGLSIPG-IIETTGKGKSKKEAEQHA 224
Query: 61 AEVALDVLSK 70
A ALD L K
Sbjct: 225 AHKALDELLK 234
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>gi|359408393|ref|ZP_09200863.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676587|gb|EHI48938.1| ribonuclease III [SAR116 cluster alpha proteobacterium HIMB100]
Length = 239
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K+ LQE + A P+Y V ++G H P+F+ +VE++G+ + +T+KQA++ AA
Sbjct: 164 KSELQEWAASAKYDRPLYHLVSQTGSAHEPMFTMSVEVSGLGVSAGEGRTRKQAEREAA 222
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>gi|13236216|gb|AAK16103.1|AF291877_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 660
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 130
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 131 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 187
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 188 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 230
>gi|30694379|ref|NP_175298.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194212|gb|AEE32333.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1197
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG PVY T + F V G+ F G+P +KK A+K+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAAHE 1158
Query: 149 AWSALKKQAKSAFS 162
A L+ ++KS+ +
Sbjct: 1159 ALLWLQGESKSSLN 1172
>gi|398350685|ref|YP_006396149.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
gi|390126011|gb|AFL49392.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
Length = 239
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 19/88 (21%)
Query: 3 KNQLQELAQRSCFNLPSY-SCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K +LQE A P Y + R GPDH PRF V +G T ES T
Sbjct: 164 KTELQEWAHAKFGVAPRYRTDDRSGPDHDPRFTVTVEVDGITSESGT------------- 210
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYK 89
SK+G ++ A R+L+ GV++
Sbjct: 211 -----DRSKRGAEQIAAMRLLEREGVWQ 233
>gi|351711673|gb|EHB14592.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Heterocephalus glaber]
Length = 525
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
G Y L + + G+K+ +GP H +F+ V + G +F ++K+ A+ A
Sbjct: 8 GFYIEELNKYHQKNGVKVSYQELSVTGPPHSLLFTFQVTIDGRTFPEGKGRSKQDAKNAA 67
Query: 146 ALAAWSALKKQAKSAFSSSSFSPPSSE 172
A A+ L ++ K SSSS + +SE
Sbjct: 68 AKLAFDVLTQEKKVGSSSSSMTKDTSE 94
>gi|155573864|gb|ABU24344.1| dsRNA-activated protein kinase R [Salmo salar]
Length = 713
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
G+ + Q+T KL +SGP H P F V + + KT K+A++ A
Sbjct: 234 GILNHYCQKTKRFLDFKL----VEKSGPSHNPQFVYKVLIDKREYPDGLGKTAKEAKQQA 289
Query: 146 ALAAWSALKKQAKSAFSSSSFSPPSSESG 174
A AWSAL++Q+ S S S E G
Sbjct: 290 AQLAWSALQEQSDWNSQVSCRSTVSEEGG 318
>gi|13236212|gb|AAK16101.1|AF291875_1 RNA adenosine deaminase 1 [Mus musculus]
Length = 634
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 30/181 (16%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 130
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 131 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 187
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTND 177
F ++ G F A +KKQ +++AA AA L +++ A P S S +D
Sbjct: 188 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKAEQLGFAELPLSGSTFHD 247
Query: 178 E 178
+
Sbjct: 248 Q 248
>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 242
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 83 DETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQA 141
+ET YK +LQE + KLP Y ++ GP H FS +V + K K++A
Sbjct: 168 EETKDYKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCENYFQSNGDGKNKRRA 227
Query: 142 QKNAALAAWSALK 154
++ AA AA LK
Sbjct: 228 EQMAAKAALRILK 240
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE Q+ LP Y ++ EGPDH F +V+ F+S R+AE A
Sbjct: 173 YKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCEN-YFQSNGDGKNKRRAEQMA 231
Query: 61 AEVALDVL 68
A+ AL +L
Sbjct: 232 AKAALRIL 239
>gi|395845296|ref|XP_003795377.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Otolemur garnettii]
Length = 1171
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKG---------- 72
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L +
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAIKALHGEATSSDDQPGDT 642
Query: 73 ------------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGH 115
P KV R ++E Y N L E + G +SGP H
Sbjct: 643 NTESCENLESVVPGKV---RRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPH 699
Query: 116 GPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 700 EPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 744
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 31/172 (18%)
Query: 15 FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG-- 72
FNL S GP H PRFK V +G F P + + A+ AA AL +L ++
Sbjct: 469 FNLIDQS----GPPHEPRFKFQVVMSGREF-PPAEAGSKKVAKQDAAMKALRILLEEAKG 523
Query: 73 --------PSKVLAARVLDETGVYK----------------NLLQETSHRAGLKLPVYTT 108
PS A + L++ + L E H+ G
Sbjct: 524 KDSGKSEEPSHHSAEKELEKIAEPQPATPSAAPLFPGKSPVTALLECVHKLGSSCEFRLL 583
Query: 109 VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
+ GP H P F V + +F A +KK A++ AA A AL +A S+
Sbjct: 584 SKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAIKALHGEATSS 635
>gi|389877454|ref|YP_006371019.1| RNAse III [Tistrella mobilis KA081020-065]
gi|388528238|gb|AFK53435.1| RNAse III [Tistrella mobilis KA081020-065]
Length = 242
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P Y+ I REGPDHAP F+ E T S R AE AAA
Sbjct: 169 KTALQEWAQARGLEAPVYTVIGREGPDHAPSFRVRAQVARLGAEEATGASK-RIAEQAAA 227
Query: 62 EVALDVLSKKG 72
+ L +G
Sbjct: 228 QSLLSRAEGRG 238
>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 246
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
Length = 263
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQE QR Y ++E GP H F + V N ET T S ++AE A
Sbjct: 191 FKSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNETLGVGTGRSK-KEAEQHA 249
Query: 61 AEVALDVLSKK 71
A+ AL LS+K
Sbjct: 250 AQQALITLSQK 260
>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Anolis carolinensis]
Length = 439
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 92 LQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWS 151
L E R L+L GP H +F+ V++ + + KTKK+A+ +AA+ AW
Sbjct: 15 LHEYCQRNRLQLEYLELDIRGPPHDRIFTVAVQIDKIQYRQCEGKTKKEAKAHAAVLAWE 74
Query: 152 ALKKQAKSAFSSSSFSPP 169
+++ ++ +S + P
Sbjct: 75 SIETGNEANLASEAHQQP 92
>gi|300681522|emb|CBH32617.1| ATP binding protein, putative, expressed [Triticum aestivum]
Length = 1072
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 972 KNQLQTLLTRAGHDNPSYKTKQI---KNTLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1028
Query: 149 AWSAL 153
A S L
Sbjct: 1029 AISWL 1033
>gi|238478799|ref|NP_001154411.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|332194213|gb|AEE32334.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1206
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG PVY T + F V G+ F G+P +KK A+K+AA
Sbjct: 1102 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAAHE 1158
Query: 149 AWSALKKQAKSAFS 162
A L+ ++KS+ +
Sbjct: 1159 ALLWLQGESKSSLN 1172
>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
Length = 252
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGRRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSALKKQAK 158
AAW L +QA+
Sbjct: 228 AAWRTLTEQAE 238
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>gi|221044884|dbj|BAH14119.1| unnamed protein product [Homo sapiens]
Length = 970
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|254469250|ref|ZP_05082655.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|374331952|ref|YP_005082136.1| ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
gi|211961085|gb|EEA96280.1| ribonuclease III [Pseudovibrio sp. JE062]
gi|359344740|gb|AEV38114.1| Ribonuclease 3 [Pseudovibrio sp. FO-BEG1]
Length = 235
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P Y I R GPDHAP FK VN G S+ R AE +AA
Sbjct: 165 KTTLQEWAQSKGRPTPQYETISRSGPDHAPIFKIRVNVEG-VDPGEAVGSSKRIAEQSAA 223
Query: 62 EVALDVLSKKG 72
E ++L ++G
Sbjct: 224 E---NILRREG 231
>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
Length = 240
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAG-VSFTGE-PAKTKKQAQKNA 145
+K LQE S GL P Y GP H F+ + + G V TG PAK K A++ A
Sbjct: 159 WKTSLQELSASLGLGAPYYEVTGEGPDHARTFTASAVVGGEVRGTGTGPAK--KIAEQEA 216
Query: 146 ALAAWSALKKQAKSA 160
A AAW+AL SA
Sbjct: 217 ASAAWTALSAVRDSA 231
>gi|395845300|ref|XP_003795379.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Otolemur garnettii]
Length = 1145
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAAAEVALDVLSKKG---------- 72
+EGP H P+F+ V +TF PT + + + A+ AAE A+ L +
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTF--PTVSAPSKKVAKQMAAEEAIKALHGEATSSDDQPGDT 642
Query: 73 ------------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGH 115
P KV R ++E Y N L E + G +SGP H
Sbjct: 643 NTESCENLESVVPGKV---RRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPH 699
Query: 116 GPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 700 EPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 744
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 31/172 (18%)
Query: 15 FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG-- 72
FNL S GP H PRFK V +G F P + + A+ AA AL +L ++
Sbjct: 469 FNLIDQS----GPPHEPRFKFQVVMSGREF-PPAEAGSKKVAKQDAAMKALRILLEEAKG 523
Query: 73 --------PSKVLAARVLDETGVYK----------------NLLQETSHRAGLKLPVYTT 108
PS A + L++ + L E H+ G
Sbjct: 524 KDSGKSEEPSHHSAEKELEKIAEPQPATPSAAPLFPGKSPVTALLECVHKLGSSCEFRLL 583
Query: 109 VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
+ GP H P F V + +F A +KK A++ AA A AL +A S+
Sbjct: 584 SKEGPAHDPKFQYCVAVGAQTFPTVSAPSKKVAKQMAAEEAIKALHGEATSS 635
>gi|251772101|gb|EES52671.1| Ribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 254
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE QR LP Y + GPDH F+ AV + + S ++AE A
Sbjct: 169 YKTQLQEYCQRELETLPQYVITGQSGPDHQKVFEVAVRIRDKNWGEGQGHSK-KEAEQKA 227
Query: 61 AEVALDVLSK 70
A+ AL+ +++
Sbjct: 228 AKSALERIAR 237
>gi|357521527|ref|XP_003631052.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
gi|355525074|gb|AET05528.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
Length = 1214
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 89 KNLLQETSHRAGLKLPVYTT--VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
KN LQ RAG +LP Y T +R+ F TV G+ F G+P +KK A+K+AA
Sbjct: 1117 KNQLQTFLSRAGHQLPTYKTQELRNNQ-----FRSTVIFNGLDFVGQPCNSKKLAEKSAA 1171
Query: 147 LAAWSALK 154
A LK
Sbjct: 1172 AEAILWLK 1179
>gi|148683240|gb|EDL15187.1| adenosine deaminase, RNA-specific, isoform CRA_c [Mus musculus]
Length = 700
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 112 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 170
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 171 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 227
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 228 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 270
>gi|12597813|gb|AAG60124.1|AC073555_8 hypothetical protein [Arabidopsis thaliana]
Length = 1167
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG PVY T + F V G+ F G+P +KK A+K+AA
Sbjct: 1072 KNQLQTLLARAGHGSPVYKTRQLKNNQ---FRSMVTFNGLDFMGKPCGSKKNAEKDAAHE 1128
Query: 149 AWSALKKQAKSAFS 162
A L+ ++KS+ +
Sbjct: 1129 ALLWLQGESKSSLN 1142
>gi|419537205|ref|ZP_14076664.1| ribonuclease III [Campylobacter coli 111-3]
gi|419568861|ref|ZP_14105990.1| ribonuclease III [Campylobacter coli 1417]
gi|419583483|ref|ZP_14119664.1| ribonuclease III [Campylobacter coli 1961]
gi|419587626|ref|ZP_14123539.1| ribonuclease III [Campylobacter coli 67-8]
gi|380515558|gb|EIA41717.1| ribonuclease III [Campylobacter coli 111-3]
gi|380544843|gb|EIA68849.1| ribonuclease III [Campylobacter coli 1417]
gi|380563074|gb|EIA85920.1| ribonuclease III [Campylobacter coli 1961]
gi|380563757|gb|EIA86585.1| ribonuclease III [Campylobacter coli 67-8]
Length = 224
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ + NG+ + ++A+ A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIVLFLNGQEL-ARAIAGNKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKITLEKL 221
>gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator]
Length = 661
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 98 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 135
>gi|395729746|ref|XP_002810146.2| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
5 [Pongo abelii]
Length = 1226
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|148683241|gb|EDL15188.1| adenosine deaminase, RNA-specific, isoform CRA_d [Mus musculus]
Length = 674
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 73/181 (40%), Gaps = 30/181 (16%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 112 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 170
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 171 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 227
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTND 177
F ++ G F A +KKQ +++AA AA L +++ A P S S +D
Sbjct: 228 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKAEQLGFAELPLSGSTFHD 287
Query: 178 E 178
+
Sbjct: 288 Q 288
>gi|18858253|ref|NP_571671.1| double-stranded RNA-specific adenosine deaminase [Danio rerio]
gi|7770273|gb|AAF69672.1| double-stranded RNA-specific editase [Danio rerio]
Length = 1382
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 80/223 (35%), Gaps = 44/223 (19%)
Query: 6 LQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
L E +QRS + +EGP H PRF V F+ + S + A AAE A+
Sbjct: 748 LMEHSQRSGHPIQFIKTGQEGPSHDPRFMFRVKVGERLFQEASAPSK-KAARQLAAEEAV 806
Query: 66 DVLSKKG------------------------------PSKVLAARVLDETGVYKNLLQET 95
L G P + E GV +L+
Sbjct: 807 KELMGDGLLHLNKPPSSFCPMGDSESQPMFPACPSLPPLTAAELQAAHEAGV-GDLINHL 865
Query: 96 SHRA--GLK----------LPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQK 143
++ A GL L + +SGP H P F+ +L G F A KKQ ++
Sbjct: 866 NNNAVSGLLELRPVLEASLLSIRLVGQSGPSHEPKFTYQAKLGGRWFPAVCASNKKQGKQ 925
Query: 144 NAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIAR 186
AA AA L +A+ A + P SG+ A+++
Sbjct: 926 EAADAALRVLIGEAEKAARTGELMPELPVSGSTIHDHIAMLSH 968
>gi|390449879|ref|ZP_10235479.1| ribonuclease III [Nitratireductor aquibiodomus RA22]
gi|389663452|gb|EIM74981.1| ribonuclease III [Nitratireductor aquibiodomus RA22]
Length = 239
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE +H+ P YT R GP H PVFS TV + G ++K++A++ AA
Sbjct: 164 KTALQEWAHQVAGVTPSYTVEDRQGPDHDPVFSVTVRITGYEPAHGRGRSKREAEQAAA 222
>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio alaskensis G20]
gi|90101625|sp|Q310Z1.1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78219156|gb|ABB38505.1| ribonuclease III [Desulfovibrio alaskensis G20]
Length = 229
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 6 LQELAQRSCFNLPSYSCIREGPD-HAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA 64
L ELA+ L +Y + +G + R +++V + FE+ L AA +
Sbjct: 83 LAELARE--LKLDTYLLLGKGEESQGGRTRSSVL--SDAFEAILGAIFLDGGYAAAGKTV 138
Query: 65 LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTV 123
L V S + P AAR D K+ LQE + R + PVYT + SGP H +F +
Sbjct: 139 LHVFSSRWPQGAEAARTKDA----KSTLQELTQRLFKERPVYTLLGSSGPEHEKIFKVRL 194
Query: 124 EL-AGVSFTGEPAKTKKQAQKNAALA 148
L G + E K+ QK A LA
Sbjct: 195 LLPDGRALETEGQSVKRAEQKAAGLA 220
>gi|31874703|emb|CAD98075.1| hypothetical protein [Homo sapiens]
Length = 1257
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 668 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 727
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 728 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 784
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 785 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 830
>gi|414341280|ref|YP_006982801.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|411026615|gb|AFV99869.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|453330555|dbj|GAC87301.1| ribonuclease III [Gluconobacter thailandicus NBRC 3255]
Length = 244
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LLQE GL LP Y + + GP H PVF V+ G++ GE A +K+ A+ AA+
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGE-AGSKRVAESAAAI 232
Query: 148 AAWSALKKQAKS 159
+ L + S
Sbjct: 233 DLLTLLGQDVAS 244
>gi|332220543|ref|XP_003259415.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Nomascus leucogenys]
Length = 1253
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 749
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 750 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 806
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 807 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 852
>gi|332220541|ref|XP_003259414.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Nomascus leucogenys]
Length = 1279
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 749
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 750 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 806
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 807 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 852
>gi|62089368|dbj|BAD93128.1| adenosine deaminase, RNA-specific isoform ADAR-a variant [Homo
sapiens]
Length = 1244
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 655 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 714
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 715 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 771
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 772 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 817
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K+ LQE +A YT ++ +GP H F V L G K+KK+A++ AA
Sbjct: 177 FKSQLQEMVQQANSGALQYTIIKENGPAHNRTFVSQVMLNGKELGVGNGKSKKEAEQKAA 236
Query: 147 LAAWSALKKQ 156
+A ALKKQ
Sbjct: 237 QSAMVALKKQ 246
>gi|383858469|ref|XP_003704724.1| PREDICTED: double-stranded RNA-specific editase Adar-like
[Megachile rotundata]
Length = 621
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 57 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 94
>gi|288923504|ref|ZP_06417623.1| ribonuclease III [Frankia sp. EUN1f]
gi|288345162|gb|EFC79572.1| ribonuclease III [Frankia sp. EUN1f]
Length = 281
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL P Y +GP H F+ +AG +KK+A++ AA
Sbjct: 168 WKTSLQEQTALLGLGPPDYVVTEAGPDHAKRFTAFARVAGEVLGEGEGGSKKEAEQRAAA 227
Query: 148 AAWSALKKQAKSA 160
A++ L+K+A +A
Sbjct: 228 TAFAMLEKRATAA 240
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQE QR + Y ++E GP H F + V+ NGE S ++AE A
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSK-KEAEQRA 224
Query: 61 AEVALDVLSK 70
A++AL L +
Sbjct: 225 AQMALAKLKQ 234
>gi|2795789|gb|AAB97116.1| RNA adenosine deaminase [Homo sapiens]
Length = 1200
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
Length = 245
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K +QE L +P Y SGP H F T++L G T +TKK+A+ AA
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAAR 235
Query: 148 AAWSALKKQA 157
A L K+A
Sbjct: 236 AMVEELSKRA 245
>gi|70166944|ref|NP_056655.2| double-stranded RNA-specific adenosine deaminase isoform b [Homo
sapiens]
gi|119573575|gb|EAW53190.1| adenosine deaminase, RNA-specific, isoform CRA_f [Homo sapiens]
Length = 1200
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 696
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 697 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 753
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 754 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
Length = 620
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 57 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 94
>gi|380024649|ref|XP_003696105.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Apis
florea]
Length = 663
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 100 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 137
>gi|242056673|ref|XP_002457482.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
gi|241929457|gb|EES02602.1| hypothetical protein SORBIDRAFT_03g008040 [Sorghum bicolor]
Length = 1390
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 1291 KNQLQTFLTRAGHSNPTYKTKQI---KSYLFRSTVEFNGMQFVGQPCANKKLAEKDAASE 1347
Query: 149 AWSALKKQAKSAFSSS 164
A + L + + S
Sbjct: 1348 ALNWLTGDGGATITDS 1363
>gi|379737165|ref|YP_005330671.1| ribonuclease 3 [Blastococcus saxobsidens DD2]
gi|378784972|emb|CCG04643.1| Ribonuclease 3 [Blastococcus saxobsidens DD2]
Length = 261
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNG 41
+K LQEL P+Y EGPDHA F AAV G
Sbjct: 193 WKTSLQELGAAQGLGAPTYQVDDEGPDHAKTFTAAVLLAG 232
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE GL P Y GP H F+ V LAG+ +TKK A++ AA
Sbjct: 193 WKTSLQELGAAQGLGAPTYQVDDEGPDHAKTFTAAVLLAGIVRGTGSGRTKKAAEQEAAE 252
Query: 148 AAWSALKKQ 156
AW AL ++
Sbjct: 253 IAWRALSEE 261
>gi|355745704|gb|EHH50329.1| hypothetical protein EGM_01140 [Macaca fascicularis]
Length = 1268
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 679 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 738
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 739 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 795
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 796 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 841
>gi|153009954|ref|YP_001371169.1| ribonuclease III [Ochrobactrum anthropi ATCC 49188]
gi|404320756|ref|ZP_10968689.1| ribonuclease III [Ochrobactrum anthropi CTS-325]
gi|151561842|gb|ABS15340.1| Ribonuclease III [Ochrobactrum anthropi ATCC 49188]
Length = 234
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE +H+ G P Y + R+GP H P+F+ V + G + ++K+ A++NAA
Sbjct: 160 KTELQEWAHQQGNVHPSYAIISRTGPDHDPLFAVEVTVKGFATETGEGRSKRIAEQNAAE 219
Query: 148 A 148
A
Sbjct: 220 A 220
>gi|149048040|gb|EDM00616.1| adenosine deaminase, RNA-specific, isoform CRA_a [Rattus
norvegicus]
Length = 634
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF S + S + A+ AAE A+ L ++
Sbjct: 72 KEGPAHDPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALQEEAANSADDQSGGA 130
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 131 NTDSLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 187
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 188 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 230
>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
Length = 241
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K++LQ +Q + +P Y ++E GPDH +F+ V NGE + + ++AE AA
Sbjct: 166 FKSELQHFSQNTLNCIPFYKVVKETGPDHEKQFEVVVRTNGEE-QGRGAGRSKKEAEQAA 224
Query: 61 AEVALDVLS 69
A AL+ L+
Sbjct: 225 ARSALEHLN 233
>gi|350415252|ref|XP_003490582.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
impatiens]
Length = 663
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 100 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 137
>gi|426331791|ref|XP_004026877.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Gorilla gorilla gorilla]
Length = 1226
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEASNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|224097532|ref|XP_002310975.1| predicted protein [Populus trichocarpa]
gi|222850795|gb|EEE88342.1| predicted protein [Populus trichocarpa]
Length = 1020
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+LLQ RAG P Y T F VE G+ F G+P + K+QA+++AA+
Sbjct: 958 KSLLQTLLMRAGHSPPKYKTKHLKTNE---FRALVEFKGMQFVGKPKRNKQQAERDAAIE 1014
Query: 149 AWSAL 153
A + L
Sbjct: 1015 ALAWL 1019
>gi|426331793|ref|XP_004026878.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Gorilla gorilla gorilla]
Length = 1200
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEASNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|410299060|gb|JAA28130.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|397492942|ref|XP_003817378.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase [Pan paniscus]
Length = 1194
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 631 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 690
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 691 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 747
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 748 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 793
>gi|915284|gb|AAC13782.1| p136 [Homo sapiens]
gi|2795791|gb|AAB97118.1| RNA adenosine deaminase [Homo sapiens]
Length = 1226
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|340725561|ref|XP_003401137.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
terrestris]
Length = 663
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 100 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 137
>gi|297280143|ref|XP_002801843.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 2 [Macaca mulatta]
Length = 1225
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 636 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 695
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 752
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 798
>gi|450159067|ref|ZP_21879220.1| ribonuclease III [Streptococcus mutans 66-2A]
gi|449241636|gb|EMC40257.1| ribonuclease III [Streptococcus mutans 66-2A]
Length = 231
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|443673520|ref|ZP_21138582.1| Ribonuclease III [Rhodococcus sp. AW25M09]
gi|443413903|emb|CCQ16920.1| Ribonuclease III [Rhodococcus sp. AW25M09]
Length = 260
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTG-EPAKTKKQAQKNAA 146
+K LQE + L +P Y +GP H F+ TV L G S G ++KK+A++ AA
Sbjct: 179 WKTSLQELTAERALGVPAYAIESTGPDHDKEFTATV-LVGESPLGVGVGRSKKEAEQKAA 237
Query: 147 LAAWSAL 153
AW+AL
Sbjct: 238 SLAWNAL 244
>gi|410222682|gb|JAA08560.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410263176|gb|JAA19554.1| adenosine deaminase, RNA-specific [Pan troglodytes]
gi|410334879|gb|JAA36386.1| adenosine deaminase, RNA-specific [Pan troglodytes]
Length = 1226
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|119383173|ref|YP_914229.1| ribonuclease III [Paracoccus denitrificans PD1222]
gi|119372940|gb|ABL68533.1| RNAse III [Paracoccus denitrificans PD1222]
Length = 241
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ + P Y I R GPDHAP F+ V + S + T R E AAA
Sbjct: 171 KTALQEWAQAQGMSPPRYVQIARTGPDHAPEFQITVRLDDGREASASGKGTKRSIEQAAA 230
Query: 62 EVALDVLSK 70
L+ + +
Sbjct: 231 TAMLEQIER 239
>gi|355558514|gb|EHH15294.1| hypothetical protein EGK_01361 [Macaca mulatta]
Length = 1269
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 680 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 739
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 740 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 796
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 797 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 842
>gi|2326526|emb|CAA55968.1| IFI-4 [Homo sapiens]
Length = 1226
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 792
>gi|70166852|ref|NP_001102.2| double-stranded RNA-specific adenosine deaminase isoform a [Homo
sapiens]
gi|577170|gb|AAB06697.1| double-stranded RNA adenosine deaminase [Homo sapiens]
gi|23398522|gb|AAH38227.1| Adenosine deaminase, RNA-specific [Homo sapiens]
gi|119573571|gb|EAW53186.1| adenosine deaminase, RNA-specific, isoform CRA_d [Homo sapiens]
gi|157928608|gb|ABW03600.1| adenosine deaminase, RNA-specific [synthetic construct]
gi|157929250|gb|ABW03910.1| adenosine deaminase, RNA-specific [synthetic construct]
Length = 1226
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|12711291|emb|CAA67170.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 1221
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 632 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 690
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 691 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 747
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 748 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 787
>gi|34364836|emb|CAE45853.1| hypothetical protein [Homo sapiens]
Length = 1278
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 668 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMASDNQPEG 727
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 728 MISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 784
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 785 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 830
>gi|297280145|ref|XP_001111902.2| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 1 [Macaca mulatta]
Length = 1199
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 636 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 695
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 752
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 798
>gi|313104303|sp|P55265.4|DSRAD_HUMAN RecName: Full=Double-stranded RNA-specific adenosine deaminase;
Short=DRADA; AltName: Full=136 kDa double-stranded
RNA-binding protein; Short=p136; AltName:
Full=Interferon-inducible protein 4; Short=IFI-4;
AltName: Full=K88DSRBP
Length = 1226
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|407799645|ref|ZP_11146523.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
gi|407058122|gb|EKE44080.1| Ribonuclease III [Oceaniovalibus guishaninsula JLT2003]
Length = 227
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G P Y V R GP H P+F+ V L AK+K+ A+++AA
Sbjct: 159 KTALQEWAQARGQTPPAYVEVARDGPDHAPLFTIEVRLDSGQSARAAAKSKRMAEQSAAR 218
Query: 148 AAWSALKKQ 156
A +AL+ Q
Sbjct: 219 ALLTALEAQ 227
>gi|424782431|ref|ZP_18209278.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959751|gb|EKU11359.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
Length = 222
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q +P Y + +GPDH F+ A+ N E S + ++AE A
Sbjct: 152 YKTALQELTQARFAEIPKYVLVGSKGPDHKKEFEIALMLN-EREISRAAGKSKKEAEQKA 210
Query: 61 AEVALDVL 68
A+ AL++L
Sbjct: 211 AKTALEIL 218
>gi|402856394|ref|XP_003892775.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Papio anubis]
Length = 1200
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 696
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 697 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 753
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 754 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|400755830|ref|YP_006564198.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
gi|398654983|gb|AFO88953.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
Length = 228
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P+Y + R+GPDH P F +V T E + RQAE AAA
Sbjct: 159 KTTLQEFAQARGEQPPAYVLVERKGPDHQPEFTISVQLQDGT-EGRATAGSKRQAEQAAA 217
Query: 62 EVAL 65
+ L
Sbjct: 218 KFLL 221
>gi|449958502|ref|ZP_21809787.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|450139209|ref|ZP_21872433.1| ribonuclease III [Streptococcus mutans NLML1]
gi|450176818|ref|ZP_21886044.1| ribonuclease III [Streptococcus mutans SM1]
gi|449170000|gb|EMB72745.1| ribonuclease III [Streptococcus mutans 4VF1]
gi|449233214|gb|EMC32293.1| ribonuclease III [Streptococcus mutans NLML1]
gi|449244617|gb|EMC42987.1| ribonuclease III [Streptococcus mutans SM1]
Length = 231
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
Length = 222
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q +P Y + +GPDH F+ A+ N E S + ++AE A
Sbjct: 152 YKTALQELTQARFAQIPKYVLVGSKGPDHKKEFEIALMLN-EREISRAAGKSKKEAEQKA 210
Query: 61 AEVALDVL 68
A+ AL++L
Sbjct: 211 AKTALEIL 218
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQE QR + Y ++E GP H F + V+ NGE S ++AE A
Sbjct: 159 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSK-KEAEQRA 217
Query: 61 AEVALDVLSK 70
A++AL L +
Sbjct: 218 AQMALAKLKQ 227
>gi|377564338|ref|ZP_09793660.1| ribonuclease III [Gordonia sputi NBRC 100414]
gi|377528520|dbj|GAB38825.1| ribonuclease III [Gordonia sputi NBRC 100414]
Length = 261
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + G P Y +GP H F+ +AG +TKK+A++ AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQKAAS 246
Query: 148 AAWSALKKQ 156
AW AL ++
Sbjct: 247 LAWQALTER 255
>gi|119503988|ref|ZP_01626069.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
gi|119459991|gb|EAW41085.1| ribonuclease III [marine gamma proteobacterium HTCC2080]
Length = 229
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE Q LPSY + EGPDHA F+ NG+ S+ R AE AA
Sbjct: 160 KTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLINGQKNAFSGRGSSRRNAEQQAA 219
Query: 62 EVALDVLS 69
VA+ L
Sbjct: 220 SVAIGELG 227
>gi|450179695|ref|ZP_21886745.1| ribonuclease III [Streptococcus mutans 24]
gi|449248803|gb|EMC47022.1| ribonuclease III [Streptococcus mutans 24]
Length = 231
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE A LP+Y + R GP HAPRF+ V G E T R+AE AA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEG--LAGTKREAEQNAA 213
Query: 62 EVALDVL 68
L+ L
Sbjct: 214 RDLLEQL 220
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE + G LP Y V R+GP H P F V +AG + G A TK++A++NAA
Sbjct: 156 KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEG-LAGTKREAEQNAA 213
>gi|297806475|ref|XP_002871121.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316958|gb|EFH47380.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1160
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+LLQ RAG P Y T F VE G+ F G+P + K A+K+AA+
Sbjct: 1064 KSLLQTLLMRAGHSPPKYKTKHLKTNE---FRALVEFKGMQFVGKPQRNKTLAEKDAAVE 1120
Query: 149 AWSALKKQAKSAFSSSSFSPPSSES 173
A + L + ++ + + P +++
Sbjct: 1121 ALAWLTHTSDNSTGHADYRPDVTDN 1145
>gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|396078041|dbj|BAM31417.1| ribonuclease III [Helicobacter cinaedi ATCC BAA-847]
Length = 242
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q +P+Y+ + E GPDH F+ A++ NG + S+ + A+ +
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEYARAK-GSSKKDAQQKS 219
Query: 61 AEVALDVLS 69
A++A + +S
Sbjct: 220 AQIAYEKIS 228
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + ++P YT V SGP H F + + GV + +KK AQ+ +A
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSA 220
Query: 147 LAAWSAL 153
A+ +
Sbjct: 221 QIAYEKI 227
>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
Length = 222
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q +P Y + +GPDH F+ A+ N E S + ++AE A
Sbjct: 152 YKTALQELTQARFAEIPKYVLVGSKGPDHKKEFEIALMLN-EREISRAAGKSKKEAEQKA 210
Query: 61 AEVALDVL 68
A+ AL++L
Sbjct: 211 AKTALEIL 218
>gi|402856392|ref|XP_003892774.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
1 [Papio anubis]
Length = 1226
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 32/166 (19%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEV-------------------- 63
+EGP H P+F+ V +TF S + S + AA E
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEATNSMTSDDQPEG 696
Query: 64 ----ALDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPG 114
+LD L P+KV R + E Y N L E + G +SGP
Sbjct: 697 MISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPP 753
Query: 115 HGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 754 HEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|386760965|ref|YP_006234600.1| ribonuclease III [Helicobacter cinaedi PAGU611]
gi|385145981|dbj|BAM11489.1| ribonuclease III [Helicobacter cinaedi PAGU611]
Length = 242
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q +P+Y+ + E GPDH F+ A++ NG + S+ + A+ +
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEYARAK-GSSKKDAQQKS 219
Query: 61 AEVALDVLS 69
A++A + +S
Sbjct: 220 AQIAYEKIS 228
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + ++P YT V SGP H F + + GV + +KK AQ+ +A
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEYARAKGSSKKDAQQKSA 220
Query: 147 LAAW---SALKK 155
A+ SAL K
Sbjct: 221 QIAYEKISALYK 232
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE S R GL P Y + SGP H P ++ V + G ++KK A++ AA
Sbjct: 233 KTALQELSRRLGLGEPSYRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAAR 292
Query: 148 AAWSALKK 155
A + L++
Sbjct: 293 IALADLEE 300
>gi|449930017|ref|ZP_21801928.1| ribonuclease III [Streptococcus mutans 3SN1]
gi|449163899|gb|EMB66988.1| ribonuclease III [Streptococcus mutans 3SN1]
Length = 231
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|290580116|ref|YP_003484508.1| ribonuclease III [Streptococcus mutans NN2025]
gi|387785786|ref|YP_006250882.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|397650125|ref|YP_006490652.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449883155|ref|ZP_21784950.1| ribonuclease III [Streptococcus mutans SA38]
gi|449886646|ref|ZP_21786331.1| ribonuclease III [Streptococcus mutans SA41]
gi|449896580|ref|ZP_21789793.1| ribonuclease III [Streptococcus mutans R221]
gi|449903105|ref|ZP_21791946.1| ribonuclease III [Streptococcus mutans M230]
gi|449910394|ref|ZP_21794689.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449915436|ref|ZP_21796285.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449923956|ref|ZP_21799326.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449936957|ref|ZP_21804303.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449942733|ref|ZP_21806143.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449948097|ref|ZP_21807841.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449965596|ref|ZP_21811915.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449969401|ref|ZP_21813219.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449981797|ref|ZP_21817972.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449985613|ref|ZP_21819761.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449988985|ref|ZP_21820855.1| ribonuclease III [Streptococcus mutans NVAB]
gi|450001131|ref|ZP_21825544.1| ribonuclease III [Streptococcus mutans N29]
gi|450004965|ref|ZP_21826386.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|450009568|ref|ZP_21828167.1| ribonuclease III [Streptococcus mutans A19]
gi|450022617|ref|ZP_21830065.1| ribonuclease III [Streptococcus mutans U138]
gi|450029673|ref|ZP_21832794.1| ribonuclease III [Streptococcus mutans G123]
gi|450040444|ref|ZP_21836806.1| ribonuclease III [Streptococcus mutans T4]
gi|450045382|ref|ZP_21838444.1| ribonuclease III [Streptococcus mutans N34]
gi|450057211|ref|ZP_21842431.1| ribonuclease III [Streptococcus mutans NLML4]
gi|450062246|ref|ZP_21844215.1| ribonuclease III [Streptococcus mutans NLML5]
gi|450067623|ref|ZP_21846753.1| ribonuclease III [Streptococcus mutans NLML9]
gi|450070918|ref|ZP_21847870.1| ribonuclease III [Streptococcus mutans M2A]
gi|450076690|ref|ZP_21849975.1| ribonuclease III [Streptococcus mutans N3209]
gi|450086822|ref|ZP_21853909.1| ribonuclease III [Streptococcus mutans NV1996]
gi|450092975|ref|ZP_21856361.1| ribonuclease III [Streptococcus mutans W6]
gi|450097913|ref|ZP_21857712.1| ribonuclease III [Streptococcus mutans SF1]
gi|450111244|ref|ZP_21862577.1| ribonuclease III [Streptococcus mutans SM6]
gi|450115163|ref|ZP_21863766.1| ribonuclease III [Streptococcus mutans ST1]
gi|450120101|ref|ZP_21865491.1| ribonuclease III [Streptococcus mutans ST6]
gi|450128458|ref|ZP_21868976.1| ribonuclease III [Streptococcus mutans U2A]
gi|450132303|ref|ZP_21869976.1| ribonuclease III [Streptococcus mutans NLML8]
gi|450144543|ref|ZP_21874088.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|450148952|ref|ZP_21875891.1| ribonuclease III [Streptococcus mutans 14D]
gi|450153375|ref|ZP_21877182.1| ribonuclease III [Streptococcus mutans 21]
gi|450164294|ref|ZP_21881265.1| ribonuclease III [Streptococcus mutans B]
gi|450169338|ref|ZP_21882938.1| ribonuclease III [Streptococcus mutans SM4]
gi|254997015|dbj|BAH87616.1| putative ribonuclease III [Streptococcus mutans NN2025]
gi|379132187|dbj|BAL68939.1| putative ribonuclease III [Streptococcus mutans LJ23]
gi|392603694|gb|AFM81858.1| ribonuclease III [Streptococcus mutans GS-5]
gi|449149964|gb|EMB53742.1| ribonuclease III [Streptococcus mutans 11A1]
gi|449150611|gb|EMB54371.1| ribonuclease III [Streptococcus mutans 1ID3]
gi|449153291|gb|EMB56977.1| ribonuclease III [Streptococcus mutans NLML8]
gi|449156564|gb|EMB60031.1| ribonuclease III [Streptococcus mutans 15JP3]
gi|449163527|gb|EMB66630.1| ribonuclease III [Streptococcus mutans 4SM1]
gi|449165032|gb|EMB68062.1| ribonuclease III [Streptococcus mutans 2ST1]
gi|449167960|gb|EMB70809.1| ribonuclease III [Streptococcus mutans 11SSST2]
gi|449171066|gb|EMB73743.1| ribonuclease III [Streptococcus mutans 15VF2]
gi|449174220|gb|EMB76725.1| ribonuclease III [Streptococcus mutans 2VS1]
gi|449175505|gb|EMB77915.1| ribonuclease III [Streptococcus mutans 5SM3]
gi|449178974|gb|EMB81208.1| ribonuclease III [Streptococcus mutans NFSM2]
gi|449183233|gb|EMB85225.1| ribonuclease III [Streptococcus mutans NVAB]
gi|449184921|gb|EMB86831.1| ribonuclease III [Streptococcus mutans N29]
gi|449189156|gb|EMB90833.1| ribonuclease III [Streptococcus mutans NMT4863]
gi|449190861|gb|EMB92406.1| ribonuclease III [Streptococcus mutans A19]
gi|449194139|gb|EMB95504.1| ribonuclease III [Streptococcus mutans G123]
gi|449194726|gb|EMB96073.1| ribonuclease III [Streptococcus mutans U138]
gi|449198938|gb|EMC00026.1| ribonuclease III [Streptococcus mutans T4]
gi|449200451|gb|EMC01479.1| ribonuclease III [Streptococcus mutans N34]
gi|449205570|gb|EMC06309.1| ribonuclease III [Streptococcus mutans NLML4]
gi|449206170|gb|EMC06885.1| ribonuclease III [Streptococcus mutans NLML5]
gi|449207926|gb|EMC08574.1| ribonuclease III [Streptococcus mutans NLML9]
gi|449212320|gb|EMC12693.1| ribonuclease III [Streptococcus mutans N3209]
gi|449213161|gb|EMC13504.1| ribonuclease III [Streptococcus mutans M2A]
gi|449217589|gb|EMC17630.1| ribonuclease III [Streptococcus mutans W6]
gi|449219025|gb|EMC19011.1| ribonuclease III [Streptococcus mutans NV1996]
gi|449221970|gb|EMC21712.1| ribonuclease III [Streptococcus mutans SF1]
gi|449224014|gb|EMC23670.1| ribonuclease III [Streptococcus mutans SM6]
gi|449228279|gb|EMC27654.1| ribonuclease III [Streptococcus mutans ST1]
gi|449229529|gb|EMC28839.1| ribonuclease III [Streptococcus mutans U2A]
gi|449230588|gb|EMC29840.1| ribonuclease III [Streptococcus mutans ST6]
gi|449235188|gb|EMC34160.1| ribonuclease III [Streptococcus mutans 14D]
gi|449238994|gb|EMC37730.1| ribonuclease III [Streptococcus mutans 21]
gi|449242224|gb|EMC40825.1| ribonuclease III [Streptococcus mutans B]
gi|449247478|gb|EMC45758.1| ribonuclease III [Streptococcus mutans SM4]
gi|449250176|gb|EMC48250.1| ribonuclease III [Streptococcus mutans SA38]
gi|449253905|gb|EMC51838.1| ribonuclease III [Streptococcus mutans SA41]
gi|449259703|gb|EMC57223.1| ribonuclease III [Streptococcus mutans OMZ175]
gi|449261655|gb|EMC59123.1| ribonuclease III [Streptococcus mutans M230]
gi|449261943|gb|EMC59402.1| ribonuclease III [Streptococcus mutans R221]
Length = 231
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|449920226|ref|ZP_21798388.1| ribonuclease III [Streptococcus mutans 1SM1]
gi|449158830|gb|EMB62236.1| ribonuclease III [Streptococcus mutans 1SM1]
Length = 231
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|449876824|ref|ZP_21782982.1| ribonuclease III [Streptococcus mutans S1B]
gi|449976057|ref|ZP_21816088.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449176047|gb|EMB78414.1| ribonuclease III [Streptococcus mutans 11VS1]
gi|449251723|gb|EMC49726.1| ribonuclease III [Streptococcus mutans S1B]
Length = 231
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|365898360|ref|ZP_09436321.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
gi|365420885|emb|CCE08863.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3843]
Length = 284
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLESAEGVGGSKRAAEKVAA 268
>gi|24379904|ref|NP_721859.1| ribonuclease III [Streptococcus mutans UA159]
gi|449865592|ref|ZP_21779071.1| ribonuclease III [Streptococcus mutans U2B]
gi|449870030|ref|ZP_21780421.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|450036656|ref|ZP_21835579.1| ribonuclease III [Streptococcus mutans M21]
gi|450082186|ref|ZP_21852201.1| ribonuclease III [Streptococcus mutans N66]
gi|450106671|ref|ZP_21860623.1| ribonuclease III [Streptococcus mutans SF14]
gi|81451148|sp|Q8DT66.1|RNC_STRMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|24377882|gb|AAN59165.1|AE014983_6 putative ribonuclease III [Streptococcus mutans UA159]
gi|449157259|gb|EMB60706.1| ribonuclease III [Streptococcus mutans 8ID3]
gi|449193614|gb|EMB94994.1| ribonuclease III [Streptococcus mutans M21]
gi|449214558|gb|EMC14814.1| ribonuclease III [Streptococcus mutans N66]
gi|449223107|gb|EMC22812.1| ribonuclease III [Streptococcus mutans SF14]
gi|449264141|gb|EMC61490.1| ribonuclease III [Streptococcus mutans U2B]
Length = 231
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q L Y ++E GP HA F+ AV+ N E S T S + AE A
Sbjct: 161 YKTALQELLQVDGDVLIDYEVLKESGPAHAKCFEVAVSMNHEKLSSGTGKSK-KLAEQEA 219
Query: 61 AEVALDVLSK 70
A+ AL+ L +
Sbjct: 220 AKNALEKLQR 229
>gi|383411201|gb|AFH28814.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 588 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMTSDDQPE 646
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 647 GMISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 703
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 704 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 743
>gi|384939262|gb|AFI33236.1| double-stranded RNA-specific adenosine deaminase isoform a [Macaca
mulatta]
Length = 1177
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 588 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMTSDDQPE 646
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 647 GMISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 703
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 704 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 743
>gi|373486435|ref|ZP_09577109.1| ribonuclease III [Holophaga foetida DSM 6591]
gi|372011685|gb|EHP12275.1| ribonuclease III [Holophaga foetida DSM 6591]
Length = 235
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQET+ G P Y + +SGP H P F V++AG+ GE A T K AQ AA
Sbjct: 166 KTTLQETAASRGCPPPTYELLQKSGPDHAPNFLVRVQVAGIEAQGE-APTLKAAQTRAAR 224
Query: 148 AAWSALKKQ 156
A L+++
Sbjct: 225 EALRLLREE 233
>gi|397670033|ref|YP_006511568.1| ribonuclease III [Propionibacterium propionicum F0230a]
gi|395142645|gb|AFN46752.1| ribonuclease III [Propionibacterium propionicum F0230a]
Length = 213
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
YK LQE +GL+ P Y V GP H +F+ T + G + A +KK+A++ AA
Sbjct: 144 YKTALQEYCAHSGLEPPRYEIVGEGPDHQRIFTATAMVGGKAVGSGVASSKKRAEQLAAH 203
Query: 148 AAWSAL 153
A +L
Sbjct: 204 EACRSL 209
>gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
Length = 1657
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
GP HAP F AV +G+T+E T + A+HAAAE+AL
Sbjct: 1096 GPTHAPIFTIAVQIDGQTYEGKG--RTKKMAKHAAAELAL 1133
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 26 GPDHAPRFKAAVNFNGETF--------------ESPTFCSTLRQAEHAAAEVALDVLSKK 71
GP H PRF V NGE + STL++ E++AA V + S++
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQDKKKKGAECMAAKMALSTLKERENSAATV-IQTTSEQ 88
Query: 72 GPSKVL---------AARVLDET--GV---YKNLLQETSHRAGLKLPVYTTVRSGPGHGP 117
S ++ +A + ET G Y +L E + L + + R G H P
Sbjct: 89 DSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTL-IVTFLDERHGQPHIP 147
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
F C + F K KK+A++ AA A +LK
Sbjct: 148 EFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
>gi|40063138|gb|AAR37985.1| ribonuclease III, partial [uncultured marine bacterium 561]
Length = 149
Score = 40.0 bits (92), Expect = 3.4, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE Q LPSY + EGPDHA F+ G+ S+ R AE AA
Sbjct: 80 KTLLQEWLQARNLPLPSYDLVSVEGPDHAQEFEVVCLIKGQKNAFSGRGSSRRNAEQQAA 139
Query: 62 EVALDVL 68
VA+ L
Sbjct: 140 SVAIGEL 146
>gi|110633304|ref|YP_673512.1| ribonuclease III [Chelativorans sp. BNC1]
gi|110284288|gb|ABG62347.1| RNAse III [Chelativorans sp. BNC1]
Length = 238
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTT-VRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE +HR P Y R GP H PVF+ V +AG ++K++A++ AA
Sbjct: 163 KTALQEWAHRVSSATPDYVIESREGPDHDPVFTAVVRIAGFQEGRGRGRSKREAEQAAA 221
>gi|148256032|ref|YP_001240617.1| ribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146408205|gb|ABQ36711.1| RNAse III [Bradyrhizobium sp. BTAi1]
Length = 368
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 294 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLESAEGVGGSKRAAEKVAA 352
>gi|392426870|ref|YP_006467864.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391356833|gb|AFM42532.1| ribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 262
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
G YK +LQE + R +++ V GP H F+ V L G +TKK+A+++A
Sbjct: 188 GDYKTMLQEKAQRQEIEVGYQILVEEGPDHNKSFTAGVFLQGNLMGKGIGRTKKEAEQHA 247
Query: 146 A---LAAWS 151
A L W
Sbjct: 248 AQQVLENWG 256
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 26 GPDHAPRFKAAVNFNGETF--------------ESPTFCSTLRQAEHAAAEVALDVLSKK 71
GP H PRF V NGE + STL++ E++AA V + S++
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQDKKKKGAEYMAAKMALSTLKERENSAATV-IQTTSEQ 88
Query: 72 GPSKVL---------AARVLDET--GV---YKNLLQETSHRAGLKLPVYTTVRSGPGHGP 117
S ++ +A + ET G Y +L E + L + + R G H P
Sbjct: 89 DSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTL-IVTFLDERHGQPHIP 147
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
F C + F K KK+A++ AA A +LK
Sbjct: 148 EFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISLK 184
>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
Length = 252
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGQRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSALKKQA 157
AAW L +QA
Sbjct: 228 AAWRTLTEQA 237
>gi|326509123|dbj|BAJ86954.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1247
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 1147 KNQLQTLLTRAGHDNPSYKTKQI---KNTLFRSTVEFNGMEFVGQPCANKKLAEKDAA 1201
>gi|257055001|ref|YP_003132833.1| RNAse III [Saccharomonospora viridis DSM 43017]
gi|256584873|gb|ACU96006.1| RNAse III [Saccharomonospora viridis DSM 43017]
Length = 250
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNG 41
+K LQEL + +P Y + GPDH F A V NG
Sbjct: 170 WKTSLQELTASAGLGVPEYKVVDTGPDHRKEFSAVVLVNG 209
>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 238
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 81 VLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKK 139
++D+ K LQE + GL P Y + R GP H P+F+ V + G+ K+
Sbjct: 158 LIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAVVVQGLESAEARGPNKR 217
Query: 140 QAQKNAA 146
AQ AA
Sbjct: 218 SAQMQAA 224
>gi|422390078|ref|ZP_16470174.1| ribonuclease III [Propionibacterium acnes HL103PA1]
gi|422463027|ref|ZP_16539646.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|422467304|ref|ZP_16543858.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|422469381|ref|ZP_16545906.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|422565430|ref|ZP_16641079.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|422575316|ref|ZP_16650857.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
Length = 265
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQE F+ P Y + GPDH R+ A N +G + + T + ++AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNK-KEAEQGAA 250
Query: 62 EVALDVL 68
A+ L
Sbjct: 251 RRAVSAL 257
>gi|302800682|ref|XP_002982098.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
gi|300150114|gb|EFJ16766.1| hypothetical protein SELMODRAFT_421581 [Selaginella moellendorffii]
Length = 871
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 30 APRFKAAVNF-----------NGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA 78
APR +A + NG +ES TL+ AEH+AA+ ALD L+
Sbjct: 352 APRIRAEIRLDGAEQGFQAYVNGVKYESEDGFPTLKAAEHSAAKKALDSLTGGANGTSTV 411
Query: 79 ARVLDETGVYKNLLQETSHRAGLK 102
A TG+ KN+LQE+ A +K
Sbjct: 412 APGSSMTGLCKNVLQESKREAEVK 435
>gi|410943088|ref|ZP_11374829.1| ribonuclease III [Gluconobacter frateurii NBRC 101659]
Length = 244
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LLQE GL LP Y + + GP H PVF V+ G++ GE A +K+ A+ AA+
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGE-AGSKRVAESAAAI 232
Query: 148 AAWSALKKQAKS 159
L + S
Sbjct: 233 DLLKLLGQDVAS 244
>gi|357131922|ref|XP_003567582.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like
[Brachypodium distachyon]
Length = 1247
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 69 SKKGPSKV-LAARVLDETGVY-----KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCT 122
SKK + LA+ +D G + KN LQ RAG P Y T + +F T
Sbjct: 1125 SKKAKTMTSLASASMDRGGGHGGDNPKNQLQTLLTRAGHGNPSYKTKQI---KNSLFRST 1181
Query: 123 VELAGVSFTGEPAKTKKQAQKNAA 146
VE G+ F G+P KK A+K+AA
Sbjct: 1182 VEFNGMQFVGQPCANKKLAEKDAA 1205
>gi|254797243|ref|YP_003082085.1| ribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590493|gb|ACT69855.1| ribonuclease III [Neorickettsia risticii str. Illinois]
Length = 222
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE G+K PVY + RSGP H P+F + + G ++KK ++NAA
Sbjct: 153 KSALQELLQAKGMKPPVYNVIDRSGPAHLPIFEVEICVDGKKRRA-TGRSKKLGEENAAR 211
Query: 148 AAWSALKKQAK 158
LK + +
Sbjct: 212 MMLEELKAETR 222
>gi|15639796|ref|NP_219246.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189026034|ref|YP_001933806.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
gi|378973322|ref|YP_005221928.1| ribonuclease III [Treponema pallidum subsp. pertenue str. SamoaD]
gi|378974389|ref|YP_005222997.1| ribonuclease III [Treponema pallidum subsp. pertenue str. Gauthier]
gi|378975447|ref|YP_005224057.1| ribonuclease III [Treponema pallidum subsp. pallidum DAL-1]
gi|378982298|ref|YP_005230605.1| ribonuclease III [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422299|ref|YP_005631658.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
gi|408502663|ref|YP_006870107.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Mexico A]
gi|6094109|sp|O83787.1|RNC_TREPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238689343|sp|B2S448.1|RNC_TREPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3323122|gb|AAC65778.1| ribonuclease III (rnc) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018609|gb|ACD71227.1| ribonuclease III [Treponema pallidum subsp. pallidum SS14]
gi|291060165|gb|ADD72900.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Chicago]
gi|374677647|gb|AEZ57940.1| ribonuclease III [Treponema pallidum subsp. pertenue str. SamoaD]
gi|374678717|gb|AEZ59009.1| ribonuclease III [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679786|gb|AEZ60077.1| ribonuclease III [Treponema pallidum subsp. pertenue str. Gauthier]
gi|374680847|gb|AEZ61137.1| ribonuclease III [Treponema pallidum subsp. pallidum DAL-1]
gi|408476026|gb|AFU66791.1| ribonuclease III [Treponema pallidum subsp. pallidum str. Mexico A]
Length = 254
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQ LA + + P Y+ + R GPDH+ RF V F P + ++ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALDVLS 69
A +A + LS
Sbjct: 241 ARLAWEQLS 249
>gi|452750894|ref|ZP_21950641.1| Ribonuclease III [alpha proteobacterium JLT2015]
gi|451962088|gb|EMD84497.1| Ribonuclease III [alpha proteobacterium JLT2015]
Length = 230
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
KN LQE AQ+ +P Y + R+GP HAPRF V+ G T S+ ++AE AAA
Sbjct: 162 KNALQEWAQQRQLPIPQYQIVGRDGPPHAPRFTVEVHLPGRT-PCAGEGSSKQEAEKAAA 220
Query: 62 EVALD 66
L+
Sbjct: 221 TQMLE 225
>gi|398821092|ref|ZP_10579580.1| ribonuclease III [Bradyrhizobium sp. YR681]
gi|398228233|gb|EJN14367.1| ribonuclease III [Bradyrhizobium sp. YR681]
Length = 271
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 256
>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
gi|386069698|ref|YP_005984594.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
gi|353454065|gb|AER04584.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
Length = 246
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQE F+ P Y + GPDH R+ A N +G + + T + ++AE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNK-KEAEQGAA 231
Query: 62 EVALDVL 68
A+ L
Sbjct: 232 RRAVSAL 238
>gi|410987074|ref|XP_003999833.1| PREDICTED: double-stranded RNA-specific adenosine deaminase [Felis
catus]
Length = 1083
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 27/166 (16%)
Query: 26 GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVL----------------- 68
GP H PRFK V G F P + + A+ AA A+ +L
Sbjct: 437 GPPHEPRFKFQVIIGGREF-PPAEAGSKKVAKQDAALKAMTILLEEAKARDSGRAEEPYD 495
Query: 69 --SKKGPSKVLAARVLDETGV----YKN---LLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
+KG K ++ + KN L E H+ G R GP H P F
Sbjct: 496 CSVEKGSEKTTESQPCTTSATPFFSGKNPVTTLLECVHKLGSSCEFRLLSREGPAHDPKF 555
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
V + +F A +KK A++ AA A AL +A S+ S +
Sbjct: 556 QYCVAMGAHTFPTASAPSKKAAKQMAAEEAMKALHGEATSSAPSDT 601
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 80 RVLDETGV--YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAK 136
RVLD YK+LLQE + PVY + RSGP H F V + G +F +
Sbjct: 195 RVLDNRHYRDYKSLLQELTQGLYRNYPVYRVLKRSGPEHDRFFWIEVSVEGKTFGPGMGR 254
Query: 137 TKKQAQKNAALAAWSAL 153
KK A++ AA A+ +
Sbjct: 255 NKKAAEQEAARIAYEEI 271
>gi|390941207|ref|YP_006404944.1| ribonuclease III [Sulfurospirillum barnesii SES-3]
gi|390194314|gb|AFL69369.1| ribonuclease III [Sulfurospirillum barnesii SES-3]
Length = 227
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K LQE + P Y VRS GP H F V + G K+KK+AQ+ AA
Sbjct: 156 HKTTLQELTQAHFGVTPEYRLVRSFGPDHKKEFEIAVCVRGNDLALASGKSKKEAQQKAA 215
Query: 147 LAAWSALKKQ 156
L A LKK+
Sbjct: 216 LLALEILKKE 225
>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
Length = 258
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
Y+ LQE R L Y +++GPG+ PV++ V + G+ F A+TK+ A AA
Sbjct: 190 YRGRLQEYVARENLGELEYAFLQTGPGNCPVWAARVTVGGIPFGEGEARTKQGAAMIAAK 249
Query: 148 AAWSALKKQ 156
A + L+ +
Sbjct: 250 EALARLRGE 258
>gi|53791439|dbj|BAD52491.1| putative DEAD/H box polypeptide 36 protein [Oryza sativa Japonica
Group]
Length = 1063
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 968 KNQLQTLLTRAGHDNPSYKTKQI---KNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1024
Query: 149 AWSAL 153
A + L
Sbjct: 1025 ALNWL 1029
>gi|218187401|gb|EEC69828.1| hypothetical protein OsI_00149 [Oryza sativa Indica Group]
Length = 1680
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 1585 KNQLQTLLTRAGHDNPSYKTKQI---KNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1641
Query: 149 AWSALKKQAKS 159
A + L A S
Sbjct: 1642 ALNWLTGGAPS 1652
>gi|255546785|ref|XP_002514451.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223546447|gb|EEF47947.1| ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 1129
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+LLQ RAG P Y T F VE G+ F G+P K K+ A+++AA+
Sbjct: 1031 KSLLQTLLMRAGHSPPKYKTKHLKTNE---FRALVEFKGMQFVGKPKKNKQLAERDAAIE 1087
Query: 149 AWSALKKQAKSAFSSSSFSPPS 170
A + L + S+ + S P
Sbjct: 1088 ALAWLTHTSDSSQEENEKSQPD 1109
>gi|392402131|ref|YP_006438743.1| RNAse III [Turneriella parva DSM 21527]
gi|390610085|gb|AFM11237.1| RNAse III [Turneriella parva DSM 21527]
Length = 242
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+ LQE+ + P Y + EGPDH F A+ +GE +S T +QAE A
Sbjct: 163 FKSALQEMLAKKNHQRPEYQVVAAEGPDHDKEFTIALYVSGEK-KSEGVARTRKQAEQNA 221
Query: 61 AEVALDVLSKKGPSK 75
A+ ++ L K P+K
Sbjct: 222 AQAYMEKLGAK-PAK 235
>gi|332810381|ref|XP_513841.3| PREDICTED: double-stranded RNA-specific adenosine deaminase [Pan
troglodytes]
Length = 931
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 401 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 457
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 458 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|449497595|ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1231
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG + P Y T + F TV G++F G+P +KK A+K+AA
Sbjct: 1118 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1174
Query: 149 AWSALKKQAKSA 160
A L+ + S+
Sbjct: 1175 ALLWLQGETHSS 1186
>gi|2326524|emb|CAA55967.1| IFI-4 [Homo sapiens]
gi|12711292|emb|CAA67169.1| dsRNA adenosine deaminase [Homo sapiens]
Length = 931
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 401 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 457
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 458 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|448823447|ref|YP_007416612.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
gi|448276944|gb|AGE36368.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
Length = 245
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K +QE L +P Y SGP H F T+ L G T +TKK+A+ AA
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLTLDGKERTRGQGRTKKEAEHQAAR 235
Query: 148 AAWSALKKQA 157
A L K A
Sbjct: 236 AMVEELSKHA 245
>gi|338706758|ref|YP_004673526.1| ribonuclease III [Treponema paraluiscuniculi Cuniculi A]
gi|335344819|gb|AEH40735.1| ribonuclease III [Treponema paraluiscuniculi Cuniculi A]
Length = 254
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQ LA + + P Y+ + R GPDH+ RF V F P + ++ + AE A
Sbjct: 182 YKSTLQVLAHQRYRSKPEYTVVKRTGPDHSVRFWVDVTVGDARF-GPGYGTSKKSAEQCA 240
Query: 61 AEVALDVLS 69
A +A + LS
Sbjct: 241 ARLAWEQLS 249
>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
Length = 237
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK +LQE + L + YT + S GP H F+ V + G + AKTKK++++ +A
Sbjct: 166 YKTILQEYVSKIKLGVIEYTVLDSSGPSHLKTFTSAVIIDGKQYGSGTAKTKKESEQLSA 225
Query: 147 LAAWSAL 153
AA L
Sbjct: 226 KAALEKL 232
>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
Length = 222
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P+Y + R+GPDH P F +V T E + RQAE AAA
Sbjct: 153 KTTLQEFAQARGEQPPTYVLVERKGPDHQPEFTISVQLQDGT-EGRATAGSKRQAEQAAA 211
Query: 62 EVAL 65
+ L
Sbjct: 212 KSLL 215
>gi|45383189|ref|NP_989818.1| interferon-induced, double-stranded RNA-activated protein kinase
[Gallus gallus]
gi|38194196|dbj|BAD01484.1| double-stranded RNA-activated protein kinase [Gallus gallus]
Length = 550
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 13/163 (7%)
Query: 5 QLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHA----- 59
++ Q++ + L GP H P F+ V NG + + S A
Sbjct: 8 KINRYCQKNKYKLDYVDVDMRGPSHDPEFEVVVKINGVKYGTGVGKSKKEAKAAAAAKTW 67
Query: 60 -AAEVALDVLSKKGPSKV----LAARVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGP 113
E D L S V L A VL Y +LL + S + L+L Y + R+G
Sbjct: 68 DMIEPKQDNLLNVHTSDVVISPLPADVLPPVD-YISLLNKYSQKT-LQLVDYNNINRTGD 125
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156
H P++SC+ ++G + + A++ AA A+ L+KQ
Sbjct: 126 PHAPMYSCSCVISGHVYGNGKGNSLAVAKQAAAKEAYEVLQKQ 168
>gi|70167113|ref|NP_001020278.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|301601658|ref|NP_001180424.1| double-stranded RNA-specific adenosine deaminase isoform d [Homo
sapiens]
gi|119573568|gb|EAW53183.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
gi|119573572|gb|EAW53187.1| adenosine deaminase, RNA-specific, isoform CRA_a [Homo sapiens]
Length = 931
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 401 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 457
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 458 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|222617638|gb|EEE53770.1| hypothetical protein OsJ_00159 [Oryza sativa Japonica Group]
Length = 1700
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 1605 KNQLQTLLTRAGHDNPSYKTKQI---KNSLFRSTVEFNGMQFVGQPCANKKLAEKDAAGE 1661
Query: 149 AWSALKKQAKS 159
A + L A S
Sbjct: 1662 ALNWLTGGAPS 1672
>gi|119573573|gb|EAW53188.1| adenosine deaminase, RNA-specific, isoform CRA_e [Homo sapiens]
Length = 905
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 400
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 401 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 457
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 458 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|260436673|ref|ZP_05790643.1| ribonuclease III [Synechococcus sp. WH 8109]
gi|260414547|gb|EEX07843.1| ribonuclease III [Synechococcus sp. WH 8109]
Length = 241
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGP--VFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE S GL LP Y T HG F C V + +++K+A++NAA
Sbjct: 165 KTTLQEWSQGQGLGLPNYATEECSRQHGDPERFRCRVSIQDRELAEAKGRSRKEAEQNAA 224
Query: 147 LAAWSALK 154
AA AL+
Sbjct: 225 TAALQALE 232
>gi|441521639|ref|ZP_21003298.1| ribonuclease III [Gordonia sihwensis NBRC 108236]
gi|441458862|dbj|GAC61259.1| ribonuclease III [Gordonia sihwensis NBRC 108236]
Length = 234
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE S L P Y +GP H F+ + G +TKK+A++NAA
Sbjct: 164 WKTSLQELSAERSLGQPQYQVTSTGPDHNKEFTAIAVVGGTQLGTGTGRTKKEAEQNAAE 223
Query: 148 AAWSALKKQ 156
AW AL++Q
Sbjct: 224 LAWKALEEQ 232
>gi|432906952|ref|XP_004077608.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced, double-stranded
RNA-activated protein kinase [Oryzias latipes]
Length = 900
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 104 PVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFS 162
P Y VR +GP H P F + L + ++ K+A++ AA AWS +K+Q++++ S
Sbjct: 233 PSYVEVRRAGPSHNPTFFYKLLLNKQEYPVAEGRSVKEARQKAAQLAWSTIKEQSETSLS 292
Query: 163 SSSFSPPSSESGT 175
S + S+ + T
Sbjct: 293 DSGRATASTPTST 305
>gi|348169250|ref|ZP_08876144.1| ribonuclease III [Saccharopolyspora spinosa NRRL 18395]
Length = 249
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETF 44
+K LQEL + +P Y +GPDH F A V G+T+
Sbjct: 170 WKTSLQELTASTGLGVPEYRVEEQGPDHRKEFSAYVAVGGQTY 212
>gi|399991331|ref|YP_006571571.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398655886|gb|AFO89852.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 228
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ P+Y + R GPDH P F +V T E + RQAE AAA
Sbjct: 159 KTTLQEFAQARGEQPPAYVLVERTGPDHQPEFTISVQLQDGT-EGRATAGSKRQAEQAAA 217
Query: 62 EVALDVLSKK 71
+ L L ++
Sbjct: 218 KFLLARLEQE 227
>gi|374292002|ref|YP_005039037.1| RNase III [Azospirillum lipoferum 4B]
gi|357423941|emb|CBS86804.1| RNase III [Azospirillum lipoferum 4B]
Length = 261
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G LP Y + RSGP H P+F V +AG+ +K+ A+K AA
Sbjct: 190 KTTLQEWAQGRGKPLPRYELIERSGPAHEPLFVVAVHVAGMDPVNGSGSSKRIAEKKAA- 248
Query: 148 AAWSALKKQ 156
SAL +Q
Sbjct: 249 ---SALLRQ 254
>gi|383771402|ref|YP_005450467.1| RNase III [Bradyrhizobium sp. S23321]
gi|381359525|dbj|BAL76355.1| RNase III [Bradyrhizobium sp. S23321]
Length = 273
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 258
>gi|90424139|ref|YP_532509.1| ribonuclease III [Rhodopseudomonas palustris BisB18]
gi|90106153|gb|ABD88190.1| RNAse III [Rhodopseudomonas palustris BisB18]
Length = 272
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 198 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 256
>gi|449439551|ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
sativus]
Length = 1168
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG + P Y T + F TV G++F G+P +KK A+K+AA
Sbjct: 1071 KNQLQTLLLRAGHETPTYNTKQLRNNQ---FRSTVIFNGLNFVGQPCGSKKLAEKDAAAE 1127
Query: 149 AWSALKKQAKSA 160
A L+ + S+
Sbjct: 1128 ALLWLQGETHSS 1139
>gi|256824933|ref|YP_003148893.1| RNAse III [Kytococcus sedentarius DSM 20547]
gi|256688326|gb|ACV06128.1| RNAse III [Kytococcus sedentarius DSM 20547]
Length = 228
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGE 42
+K LQEL LP Y GPDHA F+A GE
Sbjct: 159 WKTSLQELGSARGLGLPEYRITDSGPDHAKLFEATAVLGGE 199
>gi|354464998|ref|XP_003494967.1| PREDICTED: double-stranded RNA-specific editase B2 [Cricetulus
griseus]
Length = 739
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPP 169
++GP H PVF+ VE+ G++F G TKK+A+ AA A + Q +AF +
Sbjct: 141 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSF-VQFPNAFQAHLAMGS 198
Query: 170 SSESGTNDEQDQA 182
S+ S T+ DQA
Sbjct: 199 STSSCTDFTSDQA 211
>gi|414876601|tpg|DAA53732.1| TPA: hypothetical protein ZEAMMB73_195625 [Zea mays]
Length = 1381
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
KN LQ RAG P Y T + +F TVE G+ F G+P KK A+K+AA
Sbjct: 1283 KNQLQTYLTRAGHSNPTYKTKQI---KSYLFRSTVEFNGMQFVGQPCANKKLAEKDAASE 1339
Query: 149 AWSAL 153
A + L
Sbjct: 1340 ALNWL 1344
>gi|121533802|ref|ZP_01665629.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
gi|121307793|gb|EAX48708.1| Ribonuclease III [Thermosinus carboxydivorans Nor1]
Length = 243
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETSHRAG-LKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK +LQE +AG K+ GP H F +V + K KK+A++NAA
Sbjct: 170 YKTVLQEVVQQAGECKISYEVVAEYGPDHNKTFEVSVLVNHQHLGAGSGKNKKEAEQNAA 229
Query: 147 LAAWSALKK 155
A LKK
Sbjct: 230 KEALQKLKK 238
>gi|166157977|ref|NP_001107398.1| spermatid perinuclear RNA binding protein [Xenopus (Silurana)
tropicalis]
gi|163916317|gb|AAI57348.1| LOC100135229 protein [Xenopus (Silurana) tropicalis]
Length = 698
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 70 KKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVS 129
K+ KVL ++V+D L++ R GL+ + + +SGP H PVF+ +V++ G +
Sbjct: 372 KRNLRKVLDSKVIDSNQPMNALMRLNQIRPGLQYKLLS--QSGPVHAPVFTMSVDVDGTT 429
Query: 130 FTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQDQAIIARYLA 189
+KK A+ + A+ A+ + F + S E ++ ++ + +
Sbjct: 430 HEAS-GPSKKTAKLHVAVKVLQAM--GYPTGFDTDMECLSSDEKSDSEGKNDTVFSSSSN 486
Query: 190 TLKGPETNNSQREHRTIG--VSASIRREVIPYGDAR 223
+N+ E RT G ++AS + V+ + R
Sbjct: 487 ITGSSNADNNTLEVRTQGPILTASGKNPVMELNEKR 522
>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
Length = 236
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K+ LQE + + P Y + R GP H PVF+ V + G+ K++++A+K AAL
Sbjct: 168 KSFLQEWAVANAKRPPAYNLIERRGPDHAPVFTMEVVIDGLQPQSATGKSRQEAEKTAAL 227
Query: 148 A 148
A
Sbjct: 228 A 228
>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [Rhodobacterales bacterium HTCC2255]
gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
Length = 226
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + L P Y V RSGP H P+F+ V + TG+ AK + Q+++ A+
Sbjct: 159 KTILQEWAQAKKLPTPKYIEVDRSGPDHAPIFTIEVSIE----TGQSAKAQAQSKRAASQ 214
Query: 148 AAWSALKKQAKS 159
A + L Q +S
Sbjct: 215 DAAADLLGQLES 226
>gi|356523499|ref|XP_003530375.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1161
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+LLQ RAG P Y T F VE G+ F G+P + K+ A+++AA+
Sbjct: 1063 KSLLQTLLMRAGHSPPKYKTKHLKTNE---FRALVEFKGMQFVGKPKRNKQLAERDAAIE 1119
Query: 149 AWSALKKQAKSAFSSSSFSPPS 170
A + L + + SPP
Sbjct: 1120 ALAWLTHTSDNNQHEDDKSPPD 1141
>gi|194758980|ref|XP_001961734.1| GF14780 [Drosophila ananassae]
gi|190615431|gb|EDV30955.1| GF14780 [Drosophila ananassae]
Length = 1907
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 96 SHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+H GL +P + V P HG V TVEL G +N +LA + +
Sbjct: 1414 AHAVGLVVP--SLVTRLPRHGNVLGGTVELRG---------------QNISLACFHGINF 1456
Query: 156 QAKSAFSSSSFSPPSSESGTNDEQ--DQAIIARYLATLKGPETNNSQREHRTIGVSASIR 213
++KS ++ S PS T Q D+ ++ + L + G T Q+++ ++ + + I
Sbjct: 1457 KSKS-WALFSLRSPSINFATEARQVDDEVLVTQTLTSCLGQTTEVQQQQNHSMAIVSRIS 1515
Query: 214 REVIPYGDARSLNSLQH 230
R +I ++LN H
Sbjct: 1516 RNIIFPPQFKTLNEWFH 1532
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q P Y + GPDH F+ AV G + + S+ ++A+ A
Sbjct: 155 YKTALQELTQAKFGETPEYVILGSSGPDHKKEFEVAVCVLGSEY-ARACGSSKKEAQQEA 213
Query: 61 AEVALDVLSKK 71
A +AL++ +K
Sbjct: 214 ARIALEIFHRK 224
>gi|224129268|ref|XP_002328932.1| predicted protein [Populus trichocarpa]
gi|222839362|gb|EEE77699.1| predicted protein [Populus trichocarpa]
Length = 234
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 533 HYMAPAVHIRSVVPVCSAPPSKKYP 557
H +APAV IRSV+PVC+APPS P
Sbjct: 160 HRIAPAVQIRSVIPVCAAPPSPIRP 184
>gi|392971835|ref|ZP_10337227.1| ribonuclease III [Staphylococcus equorum subsp. equorum Mu2]
gi|403046841|ref|ZP_10902310.1| ribonuclease III [Staphylococcus sp. OJ82]
gi|392509548|emb|CCI60517.1| ribonuclease III [Staphylococcus equorum subsp. equorum Mu2]
gi|402763537|gb|EJX17630.1| ribonuclease III [Staphylococcus sp. OJ82]
Length = 244
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 82 LDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQ 140
LD +K QE HR Y + GP H +F+ V L + KTKK+
Sbjct: 167 LDGVVDFKTQFQEFVHRQNKGDVTYRLINEEGPAHHRLFTSEVILENAAVAEGKGKTKKE 226
Query: 141 AQKNAALAAWSALKKQAK 158
+++ AA +A+ ++K +AK
Sbjct: 227 SEQKAAESAYKSMKNKAK 244
>gi|348541265|ref|XP_003458107.1| PREDICTED: double-stranded RNA-specific editase B2-like
[Oreochromis niloticus]
Length = 1080
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 91 LLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
L+ R GL+ + T ++GP H PVFS VE+ G F G TKKQA+ AA
Sbjct: 448 LVHLNELRPGLQYDI--TSKTGPLHAPVFSVAVEVNGFHFEGR-GPTKKQAKMRAA 500
>gi|344238997|gb|EGV95100.1| Double-stranded RNA-specific editase B2 [Cricetulus griseus]
Length = 708
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPP 169
++GP H PVF+ VE+ G++F G TKK+A+ AA A + Q +AF +
Sbjct: 110 QTGPVHAPVFAVAVEVNGLTFEGT-GPTKKKAKMRAAEMALKSF-VQFPNAFQAHLAMGS 167
Query: 170 SSESGTNDEQDQA 182
S+ S T+ DQA
Sbjct: 168 STSSCTDFTSDQA 180
>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
Length = 263
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQ+ AQ++ P Y ++E GPDH FK + GE + + ++AE A
Sbjct: 162 YKSVLQQYAQKTLGETPRYDLLKEYGPDHLKYFKVSAAL-GEVVYAAAWGINKKEAEQKA 220
Query: 61 AEVALDVLSKK 71
A AL L K
Sbjct: 221 AANALSELEGK 231
>gi|443289363|ref|ZP_21028457.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
gi|385887516|emb|CCH16531.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
Length = 328
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ V +AG + G ++KK+A++ AA
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 148 AAWSALKKQ 156
AAW L +Q
Sbjct: 228 AAWRMLTEQ 236
>gi|380786015|gb|AFE64883.1| double-stranded RNA-specific adenosine deaminase isoform d [Macaca
mulatta]
Length = 931
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 62/160 (38%), Gaps = 34/160 (21%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMTSDDQPE 400
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 401 GMISESLDNLESVMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 457
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
H P F ++ G F A +KKQ ++ AA AA L
Sbjct: 458 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVL 497
>gi|146341377|ref|YP_001206425.1| ribonuclease III [Bradyrhizobium sp. ORS 278]
gi|146194183|emb|CAL78204.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 278]
Length = 357
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 283 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 341
>gi|348525504|ref|XP_003450262.1| PREDICTED: double-stranded RNA-specific editase B2 [Oreochromis
niloticus]
Length = 728
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 91 LLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
L+Q R GL+ + + ++GP H PVFS VE+ G++F G KK + A LA
Sbjct: 95 LVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEGTGPTKKKAKMRAAELALK 152
Query: 151 SALK--KQAKSAFSSSSFSPPSSESGTNDEQD 180
S ++ ++ + + S PS++ T+D+ D
Sbjct: 153 SFIQFPNAPQAHLAMGNISNPSADF-TSDQAD 183
>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
Length = 520
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K++LQE G P YT R GP H FS V+ + G K+KK A+++AA
Sbjct: 450 FKSMLQEFVQEKGNTPPCYTIHREFGPDHDKTFSICVKACDIESMG-SGKSKKAAEQHAA 508
Query: 147 LAAWSALKKQAK 158
A +LKK ++
Sbjct: 509 QNALKSLKKLSR 520
>gi|373252029|ref|ZP_09540147.1| ribonuclease III [Nesterenkonia sp. F]
Length = 227
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K +QE + L Y SGP H F+ T+ + GV+++ K+KK+A++ AA
Sbjct: 146 WKTTIQEVAADRDLGDIRYVMEDSGPDHDKTFTATLTVGGVAYSSGTGKSKKEAEREAA 204
>gi|428178015|gb|EKX46892.1| hypothetical protein GUITHDRAFT_152239 [Guillardia theta CCMP2712]
Length = 235
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 18 PSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVL 77
P Y ++EG +HAP+F ++ NG T S+ + A++AA++ AL +L K ++
Sbjct: 170 PCYKVVKEGVEHAPKFTVHLSLNGHPLGWGTGRSS-KDAKYAASQYALKLLESKTKQEIE 228
Query: 78 AAR 80
A +
Sbjct: 229 AIK 231
>gi|395791246|ref|ZP_10470704.1| ribonuclease 3 [Bartonella alsatica IBS 382]
gi|395408609|gb|EJF75219.1| ribonuclease 3 [Bartonella alsatica IBS 382]
Length = 235
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE +H G P Y + RSGP H PVF V +AG + +K+ A++ AA
Sbjct: 158 KTELQEWAHMQGNAQPYYRVINRSGPDHDPVFMVEVSIAGFAPEIGQGSSKRYAERIAA 216
>gi|367475465|ref|ZP_09474924.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
gi|365272181|emb|CCD87392.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 285]
Length = 367
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 293 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 351
>gi|134102537|ref|YP_001108198.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
gi|291007096|ref|ZP_06565069.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
gi|133915160|emb|CAM05273.1| ribonuclease III [Saccharopolyspora erythraea NRRL 2338]
Length = 236
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETF 44
+K LQEL + +P Y +GPDH F A V+ G+T
Sbjct: 154 WKTSLQELTAAAALGVPEYRVEEQGPDHRKEFSAYVSVAGDTL 196
>gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax]
Length = 726
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 91 LLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAW 150
L+Q R GL+ + + ++GP H PVFS VE+ G++F G KK + A LA
Sbjct: 101 LVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEGTGPTKKKAKMRAAELALK 158
Query: 151 SALK--KQAKSAFSSSSFSPPSSESGTNDEQD 180
S ++ ++ + + S PS++ T+D+ D
Sbjct: 159 SFIQFPNAPQAHLAMGNISNPSADF-TSDQAD 189
>gi|254452330|ref|ZP_05065767.1| ribonuclease III [Octadecabacter arcticus 238]
gi|198266736|gb|EDY91006.1| ribonuclease III [Octadecabacter arcticus 238]
Length = 197
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 3 KNQLQELAQRSCFNLPSY-SCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ PSY R GPDHAP F V + ++ T S RQAE AAA
Sbjct: 127 KTALQEWAQGQGEPPPSYIETARSGPDHAPIFTIEVRLHSGATDTATAPSK-RQAEQAAA 185
Query: 62 EVALD 66
+ LD
Sbjct: 186 KSLLD 190
>gi|386402441|ref|ZP_10087219.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
gi|385743067|gb|EIG63263.1| ribonuclease III [Bradyrhizobium sp. WSM1253]
Length = 283
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 268
>gi|374575961|ref|ZP_09649057.1| ribonuclease III [Bradyrhizobium sp. WSM471]
gi|374424282|gb|EHR03815.1| ribonuclease III [Bradyrhizobium sp. WSM471]
Length = 283
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 210 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 268
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPT 48
+K LQEL +P Y GPDHA F A V G+ + T
Sbjct: 169 WKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEYGKGT 215
>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
Length = 244
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K+ LQE + GL P Y V R+GP H P+F +AGV+ + +K+ A++ AA
Sbjct: 167 KSALQEWAQGLGLPTPTYAVVERAGPDHAPIFRIEARVAGVAPSLGVGGSKRLAEQEAA 225
>gi|365883075|ref|ZP_09422255.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
gi|365288507|emb|CCD94786.1| ribonuclease III (modular protein) [Bradyrhizobium sp. ORS 375]
Length = 358
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 342
>gi|3176883|gb|AAD02939.1| RNase III [Bradyrhizobium japonicum]
Length = 231
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 158 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 216
>gi|395645479|ref|ZP_10433339.1| ribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442219|gb|EJG06976.1| ribonuclease III [Methanofollis liminatans DSM 4140]
Length = 235
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 4 NQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAE 62
+LQE Q+ LP Y + R+GPDH P F +AV G F + + A+ AA
Sbjct: 167 GRLQERLQQERLGLPEYLIVSRDGPDHDPTFVSAVTVAGH-FSAFGSGGSKAGAKKEAAR 225
Query: 63 VALDVL 68
VAL+VL
Sbjct: 226 VALEVL 231
>gi|27380172|ref|NP_771701.1| RNase III [Bradyrhizobium japonicum USDA 110]
gi|27353326|dbj|BAC50326.1| RNase III [Bradyrhizobium japonicum USDA 110]
Length = 273
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 200 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 258
>gi|456354830|dbj|BAM89275.1| ribonuclease III [Agromonas oligotrophica S58]
Length = 358
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 284 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 342
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q +P+Y+ I E GPDH F+ A++ G+ + + S ++A+ +
Sbjct: 161 YKTALQEITQAFYGEIPTYTLISESGPDHKKSFEIALSVQGKEYARASGNSK-KEAQQKS 219
Query: 61 AEVALDVLSKK 71
A++A L K
Sbjct: 220 AQIAYKKLYSK 230
>gi|365889050|ref|ZP_09427771.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
gi|365335227|emb|CCE00302.1| ribonuclease III (modular protein) [Bradyrhizobium sp. STM 3809]
Length = 373
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G+ +K+ A+K AA
Sbjct: 299 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLEPAEGVGGSKRAAEKVAA 357
>gi|405380036|ref|ZP_11033880.1| ribonuclease III [Rhizobium sp. CF142]
gi|397323441|gb|EJJ27835.1| ribonuclease III [Rhizobium sp. CF142]
Length = 238
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVY-TTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE SH PVY RSGP H P F TVE+AGV+ ++K+ A++ AA
Sbjct: 163 KTELQEWSHAKYGVTPVYRVEERSGPDHDPRFKVTVEVAGVAPETGIERSKRAAEQVAA 221
>gi|384218340|ref|YP_005609506.1| RNase III [Bradyrhizobium japonicum USDA 6]
gi|354957239|dbj|BAL09918.1| RNase III [Bradyrhizobium japonicum USDA 6]
Length = 295
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 222 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 280
>gi|288958023|ref|YP_003448364.1| ribonuclease III [Azospirillum sp. B510]
gi|288910331|dbj|BAI71820.1| ribonuclease III [Azospirillum sp. B510]
Length = 261
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 89 KNLLQETSHRAGLKLPVY-TTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + G LP Y T RSGP H P+F V +AG+ +K+ A+K AA
Sbjct: 190 KTTLQEWAQGRGKPLPRYELTERSGPAHEPLFVVAVHVAGMDPVSGSGSSKRIAEKKAA- 248
Query: 148 AAWSALKKQ 156
SAL +Q
Sbjct: 249 ---SALLRQ 254
>gi|9633838|ref|NP_051918.1| gp029L [Rabbit fibroma virus]
gi|6578557|gb|AAF17911.1|AF170722_29 gp029L [Rabbit fibroma virus]
Length = 116
Score = 38.9 bits (89), Expect = 7.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
R+G H P F+ V ++G SF KK+A+KNAA A + K F
Sbjct: 65 RTGQSHNPTFTAVVTVSGYSFKSATGSNKKEARKNAAKEAMDIILKHVVIKF 116
>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
Length = 224
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y R GPDH F+ A+N G+ + S+ ++A+ A
Sbjct: 155 YKTKLQEITQAKMGLTPEYETQRAFGPDHQKSFEIALNLEGKEM-ARAIASSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++ L+ L
Sbjct: 214 AKLTLEKL 221
>gi|163760595|ref|ZP_02167676.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
gi|162282210|gb|EDQ32500.1| putative ribonuclease III [Hoeflea phototrophica DFL-43]
Length = 244
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 79 ARVLDETGVYKNL---LQETSH-RAGLKLPVY-TTVRSGPGHGPVFSCTVELAG 127
AR L E G ++ LQE +H R G+ PVY T R+GP H PVF+ TVE+ G
Sbjct: 151 ARALAEDGARRDAKTELQEWAHARFGVT-PVYRVTDRAGPDHEPVFTVTVEING 203
>gi|30179749|sp|O69161.2|RNC_BRAJA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 250
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K +LQE + GL PVY V R+GP H P F V+L G++ +K+ A+K AA
Sbjct: 177 KTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRAAEKVAA 235
>gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon
nigroviridis]
Length = 424
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
Y +LL E + + G L GP H F + G +F K K+ A+ AA
Sbjct: 4 YISLLNEQAQKQGWSLRYEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHKAAE 63
Query: 148 AAWSALKKQAKSAFSSSSFSPPS 170
AW+AL +Q S S +PP+
Sbjct: 64 NAWTALMQQ-----QSDSATPPA 81
>gi|115525028|ref|YP_781939.1| ribonuclease III [Rhodopseudomonas palustris BisA53]
gi|115518975|gb|ABJ06959.1| RNAse III [Rhodopseudomonas palustris BisA53]
Length = 268
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL P Y V R+GP H P F VEL G+ +K+ A+K AA
Sbjct: 198 KTVLQEWAQGKGLPTPAYREVERTGPDHDPKFRVRVELPGLEPAEGIGGSKRAAEKEAAS 257
Query: 148 A 148
A
Sbjct: 258 A 258
>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
Length = 216
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q +P Y+ E GPDHA +F+ + + + + S +QAE
Sbjct: 145 YKSALQELTQARFKAIPIYALKSESGPDHAKQFEMQIFILNKLYGTCKAGSK-KQAEQLC 203
Query: 61 AEVALDVLSKKGP 73
A+VA LSK+ P
Sbjct: 204 AQVAYKQLSKELP 216
>gi|356574252|ref|XP_003555264.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine
max]
Length = 1209
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+ LQ RAG P+Y T + F TVE G+ G+P KK A+K+AA
Sbjct: 1122 KSQLQTLLTRAGYAAPIYMTKQLKNNQ---FQATVEFNGMQIMGQPCNNKKSAEKDAAAE 1178
Query: 149 A--WSALKKQAKSAF 161
A W KQ +
Sbjct: 1179 ALQWLMGGKQTGKEY 1193
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 3 KNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K+ LQE AQ P+YS + GPDHAP+F+ V G E + S R AE AAA
Sbjct: 160 KSALQEWAQGQGLPPPTYSVAEQTGPDHAPKFRVLVKVKGAEGEFGSGTSK-RVAEQAAA 218
>gi|213018872|ref|ZP_03334680.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
gi|212995823|gb|EEB56463.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
JHB]
Length = 233
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
K LQE QR+ LP Y +++ GP H P F +V E+++ + C+ + + AE A
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCI--ESYDKVSACAPSKKIAEQKA 221
Query: 61 AEVALDVLSK 70
AE+ L+ + K
Sbjct: 222 AELILEKIKK 231
>gi|190571469|ref|YP_001975827.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
gi|238056573|sp|B3CMS0.1|RNC_WOLPP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|190357741|emb|CAQ55192.1| ribonuclease III [Wolbachia endosymbiont of Culex quinquefasciatus
Pel]
Length = 230
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
K LQE QR+ LP Y +++ GP H P F +V E+++ + C+ + + AE A
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCI--ESYDKVSACAPSKKIAEQKA 218
Query: 61 AEVALDVLSK 70
AE+ L+ + K
Sbjct: 219 AELILEKIKK 228
>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
Length = 224
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q +P Y+ E GPDHA +F+ + + + + S +QAE
Sbjct: 153 YKSALQELTQARFKAIPIYALKSESGPDHAKQFEMQIFILNKLYGTCKAGSK-KQAEQLC 211
Query: 61 AEVALDVLSKKGP 73
A+VA LSK+ P
Sbjct: 212 AQVAYKQLSKELP 224
>gi|83951643|ref|ZP_00960375.1| ribonuclease III [Roseovarius nubinhibens ISM]
gi|83836649|gb|EAP75946.1| ribonuclease III [Roseovarius nubinhibens ISM]
Length = 227
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P Y + R GPDHAP F GE E+ + + RQAE AA
Sbjct: 159 KTALQEWAQARGLAPPRYEEVARSGPDHAPEFTIVARLETGE--EAASKAGSKRQAEQAA 216
Query: 61 AEVALDVLSK 70
A+ L + K
Sbjct: 217 AKALLSEVDK 226
>gi|409182784|gb|AFV27009.1| double-stranded RNA-dependent protein kinase [Ctenopharyngodon
idella]
Length = 688
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
Query: 6 LQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVAL 65
L E QR+ + EGP H F NG+ + T S ++A+H+AA+ AL
Sbjct: 12 LNEYQQRTQCTVEYEEGSTEGPSHNKTFTMRAIINGQRYPDGTGKSK-KEAKHSAAKNAL 70
Query: 66 DVLSKKGPSKVLAARVLDETG-------VYKNLLQETSHRAGLKLPVYTTVRSGPGHGP- 117
D + ++ + V + + Y L E S + L T + PG+
Sbjct: 71 DGIKSTYNTESTTSSVQNISNNMTISHRNYTCWLNEHSQKNKLVFKARETTKMDPGNSTQ 130
Query: 118 --VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
+ C F K KK+A++ AAL + L K
Sbjct: 131 LCTYVCKYICGDREFPEAYGKNKKEAKEAAALCVYEELFK 170
>gi|373451001|ref|ZP_09542940.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
gi|371931808|emb|CCE77958.1| Ribonuclease 3 [Wolbachia pipientis wAlbB]
Length = 233
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
K LQE QR+ LP Y +++ GP H P F +V E+++ + C+ + + AE A
Sbjct: 164 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCI--ESYDKVSACAPSKKIAEQKA 221
Query: 61 AEVALDVLSK 70
AE+ L+ + K
Sbjct: 222 AELILEKIKK 231
>gi|154247804|ref|YP_001418762.1| ribonuclease III [Xanthobacter autotrophicus Py2]
gi|154161889|gb|ABS69105.1| Ribonuclease III [Xanthobacter autotrophicus Py2]
Length = 236
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSY-SCIREGPDHAPRFKAAVNFNG 41
K LQE AQ PSY R GPDHAPRF AV+ G
Sbjct: 163 KTVLQEWAQARGLPPPSYREVTRSGPDHAPRFTVAVDLPG 202
>gi|408684523|gb|AFU76962.1| m29L [Myxoma virus]
gi|408684690|gb|AFU77128.1| m29L [Myxoma virus]
gi|408686370|gb|AFU78798.1| m29L [Myxoma virus]
gi|408686705|gb|AFU79131.1| m29L [Myxoma virus]
gi|408686873|gb|AFU79298.1| m29L [Myxoma virus]
gi|408687377|gb|AFU79799.1| m29L [Myxoma virus]
gi|408687712|gb|AFU80132.1| m29L [Myxoma virus]
gi|408688048|gb|AFU80466.1| m29L [Myxoma virus]
gi|408688217|gb|AFU80634.1| m29L [Myxoma virus]
Length = 115
Score = 38.5 bits (88), Expect = 9.0, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
R+G H P F+ V ++G SF KK+A+KNAA A + K F
Sbjct: 64 RAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARKNAAKEAMDVILKHVVIKF 115
>gi|154253314|ref|YP_001414138.1| ribonuclease III [Parvibaculum lavamentivorans DS-1]
gi|154157264|gb|ABS64481.1| Ribonuclease III [Parvibaculum lavamentivorans DS-1]
Length = 226
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ +P+Y+ + R GPDHAP F V+ G+ ++ RQAE AA
Sbjct: 154 KTALQEWAQARGQGVPTYTLVGRSGPDHAPEFTVEVS-AGKAKPLRAQGNSKRQAEQTAA 212
Query: 62 EVALDVLS 69
L+ L
Sbjct: 213 RALLEALG 220
>gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771]
Length = 206
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVY-TTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE SH P+Y RSGP H P F TVE+AG+ ++K+ A++ AA
Sbjct: 131 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAA 189
>gi|260817370|ref|XP_002603560.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
gi|229288879|gb|EEN59571.1| hypothetical protein BRAFLDRAFT_79093 [Branchiostoma floridae]
Length = 1211
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
YK++LQ+ L P Y V+ + + + + G T EPAK+KK+A++NAA
Sbjct: 810 YKDILQKHVQDQKLPSPRYKDVKGE--ENTLSTVSFKTRGAYQTKEPAKSKKEAEQNAAK 867
Query: 148 AAWSALKKQAKSA 160
A LK +A+ A
Sbjct: 868 AVLEMLKVKARDA 880
>gi|79548544|ref|NP_178223.2| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
gi|330250311|gb|AEC05405.1| DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]
Length = 1113
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K+ LQ RAG +P+Y T + F TVE G+P KK A+K+AA
Sbjct: 1026 KSQLQTILTRAGYTVPMYKTKQLKNNK---FQTTVEFNETQIMGQPCSNKKSAEKDAAAE 1082
Query: 149 AWSALKKQAKSAFSSSSFSPPSSESGTND 177
A LK AK + + + G D
Sbjct: 1083 AIQWLKGGAKESHEQVNHMSKLLKKGKKD 1111
>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
Length = 838
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 37 VNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETS 96
V +T+ S S + AE AA VAL L + G + ++ V + YKN+LQE
Sbjct: 358 VTVGEQTYRSTIVTSKPKDAEQDAARVALVELGQSGDEEPVSLSVEEYFVNYKNVLQEHC 417
Query: 97 HRAGLKLPVYTTVR 110
+ GL P Y T +
Sbjct: 418 QKTGLHSPDYETTK 431
>gi|89070097|ref|ZP_01157427.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
gi|89044318|gb|EAR50461.1| Ribonuclease III [Oceanicola granulosus HTCC2516]
Length = 226
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQELAQ P Y I R GPDH P F V GE+ + + RQAE AA
Sbjct: 159 KTALQELAQARGEPPPGYREISRHGPDHQPLFTIEVRLATGESARAE--AGSKRQAEQAA 216
Query: 61 AEVALDVLS 69
A LD L+
Sbjct: 217 ARTLLDRLA 225
>gi|406950556|gb|EKD80794.1| hypothetical protein ACD_40C00009G0005 [uncultured bacterium]
Length = 230
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 41 GETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKN---LLQETSH 97
+TFE+ L Q +V + +L K K A+ + +T YK+ LLQE +
Sbjct: 118 ADTFEAFLGAIYLDQG----YDVCVTILEKHLLQK---AQAVLQTETYKDNKSLLQEIAQ 170
Query: 98 RAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
P+YT + SGP H F VE+ S+ K+K+ AQ++AA
Sbjct: 171 SRYKSTPLYTLISESGPDHDKQFVMRVEIGDESYAQGTGKSKQTAQEDAA 220
>gi|9633665|ref|NP_051743.1| m29L [Myxoma virus]
gi|6523884|gb|AAF14917.1|AF170726_33 m29L [Myxoma virus]
gi|170664495|gb|ACB28652.1| m29L [Myxoma virus]
gi|170664667|gb|ACB28823.1| m29L [recombinant virus 6918VP60-T2]
gi|301134555|gb|ADK63669.1| m29L [Myxoma virus]
gi|408684857|gb|AFU77294.1| m29L [Myxoma virus]
gi|408685025|gb|AFU77461.1| m29L [Myxoma virus]
gi|408685195|gb|AFU77630.1| m29L [Myxoma virus]
gi|408685365|gb|AFU77799.1| m29L [Myxoma virus]
gi|408685530|gb|AFU77963.1| m29L [Myxoma virus]
gi|408685699|gb|AFU78131.1| m29L [Myxoma virus]
gi|408685868|gb|AFU78299.1| m29L [Myxoma virus]
gi|408686033|gb|AFU78463.1| m29L [Myxoma virus]
gi|408686203|gb|AFU78632.1| m29L [Myxoma virus]
gi|408686538|gb|AFU78965.1| m29L [Myxoma virus]
gi|408687042|gb|AFU79466.1| m29L [Myxoma virus]
gi|408687209|gb|AFU79632.1| m29L [Myxoma virus]
gi|408687544|gb|AFU79965.1| m29L [Myxoma virus]
gi|408687880|gb|AFU80299.1| m29L [Myxoma virus]
Length = 115
Score = 38.5 bits (88), Expect = 9.8, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 110 RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161
R+G H P F+ V ++G SF KK+A+KNAA A + K F
Sbjct: 64 RAGQSHSPTFTAVVTVSGYSFKSATGSNKKEARKNAAKEAMDVILKHVVIKF 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.128 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,257,910,295
Number of Sequences: 23463169
Number of extensions: 396319443
Number of successful extensions: 950870
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 816
Number of HSP's that attempted gapping in prelim test: 943272
Number of HSP's gapped (non-prelim): 7028
length of query: 575
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 427
effective length of database: 8,886,646,355
effective search space: 3794597993585
effective search space used: 3794597993585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)