BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041141
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 232/587 (39%), Positives = 312/587 (53%), Gaps = 77/587 (13%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGETFESP FCSTLR AEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LSK+GPS LAA+VLDETG+YKNLLQET+HRAGLKLPVYTT+RSGPGH PVF+
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG P KTKKQAQKNAA+AAWS LK+ + SSS PP + +D+Q+
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLPRVGEPSSSSCPPDHD---DDDQE 177
Query: 181 QAIIARYLATLKGPETNNS----QREHRTIGVSASIRREVIPYGDARSLNSLQHQNWHCI 236
Q I+AR LA+L +TN Q+E + S RR P +A L H H
Sbjct: 178 QIIVARTLASLN--QTNGGKTPQQKEKQQSSNRPSSRRPSYPKSNASFYGRL-HLQKHAY 234
Query: 237 PFY-PELSLYQTCPQERVFRQQENLLALSSLPSSS-PRPQIFPFIRSMFQPDHGYYFPSL 294
P PE ++Y Q + +Q+ + + ++ S+ P P P + M+ P G +
Sbjct: 235 PSVPPEQAMYHMWHQVQATQQKPHFPMVPTMGSTGFPPP---PTVLHMYPPPRGQFTMPS 291
Query: 295 VEEPVSLV---PEIGPFL--YFSNRVMPVPVRNVSQ----VSIQEIEENPRMEEDWRKGD 345
++ + L+ PE P L YFS P P V + V++ +I E + D +
Sbjct: 292 SQDGLGLIPCYPEASPVLPRYFS----PYPASFVPRRPLPVNVHKIHEKRLVGADMVELP 347
Query: 346 GGSDCWQNNCP-------SNVPRLSQSEIPNSLVSFNSQSEQRMQEGLQGKGEEKSVSSA 398
+ + P + V + E S + +S+ + + + S
Sbjct: 348 DAAVFSRYTAPDFSGTSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESN 407
Query: 399 PNAEISNQLRNQTEQYNWFSPGFIDARFRPTTISKDGDKFRLQNTVSLDYLQSDSRPRNS 458
+ EI LR ++++ P +R P + + G + + D + RNS
Sbjct: 408 QDIEIMGGLRLESKKPAEQPPESSPSRVNPVLLCETGQRHHYSSVRHGDPVH-----RNS 462
Query: 459 TMVSSSGSVGGSVPPSFAAPMTIRASATAS------TASLRPQSSNPLVRAPPPRRTAAS 512
+S + S P IR A + + P+ +P +APP
Sbjct: 463 PQISVATS-----------PSPIRRGDPAHINIPQISVATPPECRSPRAQAPP------R 505
Query: 513 FCSSRPWPEGMRNQGGMPSRHY------MAPAVHIRSVVPVCSAPPS 553
F G R +PS Y +A +V IR+ +PVCSA P+
Sbjct: 506 F--------GTRMPVNLPSSLYQQRPPWLAASVTIRTTIPVCSARPN 544
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 159/196 (81%), Gaps = 13/196 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEV+L+VLS + PSK L A++LDETG+YKNLLQET+HRAGL LP+YT+VRSG H P FS
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTGE AKTKKQA+KNAA+AAWS+LKK SS ++E++
Sbjct: 121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKM-------------SSLDSQDEEKE 167
Query: 181 QAIIARYLATLKGPET 196
Q +AR L+ K E
Sbjct: 168 QEAVARVLSRFKPKEV 183
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/196 (69%), Positives = 157/196 (80%), Gaps = 12/196 (6%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY+C REGPDHAPRFKA+VNFNGE FESPT+CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS KGPSK L ARVLDETG+YKNLLQET+HRAGL LPVYT+VRSGPGH P FS
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG+SF GE AKTKKQA+KNAA+AAW +L+K P + +E++
Sbjct: 121 CTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKM------------PRLDPLRGEEKE 168
Query: 181 QAIIARYLATLKGPET 196
Q I+AR L+ + E
Sbjct: 169 QEIVARVLSRFRPKEV 184
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 535 MAPAVHIRSVVPVC 548
+APAVHIRSV+PVC
Sbjct: 313 LAPAVHIRSVIPVC 326
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 275 bits (704), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLPSY+CIREGPDHAPRFKA VNFNGE FESP +CSTLRQAEH+A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL+ LS +GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
TVELAG++FTG+PAK KKQA+KNAA+AAWS+LK+ AK +SSS P + DE +
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKE--TSSSMPEPEN----IDELE 174
Query: 181 QAIIARYL 188
Q IIAR L
Sbjct: 175 QVIIARAL 182
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 127/155 (81%), Positives = 139/155 (89%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCF+LPSY C REGPDHAPRFKA V FNGETF+ P+ C+TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL LS +GPS L ARVLDETGVYKNLLQET+HRAGLKLPVYTTVRSGPGH PVFS
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
TVELAG+SF G+PAKTKK A+KNAA+AAWS+LK+
Sbjct: 121 STVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/188 (70%), Positives = 154/188 (81%), Gaps = 6/188 (3%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
MYKNQLQELAQRSCFNLP+Y+C+REGPDHAPRFKAAVNFNGE FESP F +TLRQAEHAA
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL L+++GPS LAAR+LDETGVYKNLLQE + R G LP YTT RSG GH PVF+
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGTNDEQD 180
CTVELAG++FTG+PAK KKQA+KNAA AAWS+L++ + SS S+E +NDEQ+
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSLRQLVRQEASS------SNEPESNDEQE 174
Query: 181 QAIIARYL 188
Q IAR L
Sbjct: 175 QIRIARAL 182
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+YK QLQ A + LP Y+ REGP HAPRF+ V F G+TF+S F TL+ AEHAA
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
A++A+ L+ + P + A YKNLLQE + + LP Y T SGP H P F+
Sbjct: 64 AKIAVASLTPQSPEGIDVA--------YKNLLQEIAQKESSLLPFYATATSGPSHAPTFT 115
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154
TVE AG F+GE AKTKK A+ +AA A+ ++K
Sbjct: 116 STVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIK 149
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 104/174 (59%), Gaps = 3/174 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
YK+QLQ AQ+ LPSY IREGP HA RFK+ V +G+ FESP + T+++AE AAA
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 EVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSC 121
++AL L ++ S + +V + YKNLLQE + + G LPVY+T G P+F
Sbjct: 147 KLALMSLPQEASS---SEQVPVQPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSSFSPPSSESGT 175
TV SF GEPA TKKQA+ NAA A+ + + K+A SS+ P GT
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQHFEDRRKNALSSTVLRGPHLGQGT 257
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHA 59
MYK++LQEL Q+ + P Y+ GP HAP F A V+ NG F +P + + ++A +
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AA+ A D + YK+ LQ + + G LP Y T+R GPGH F
Sbjct: 61 AAKAAFD--HLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRF 118
Query: 120 SCTVELAGVSFTG-EPAKTKKQAQKNAALAAWSALKKQAKSA 160
V + G +F E T K+A+ AA A +L ++A S+
Sbjct: 119 KSVVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQEASSS 160
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 4/166 (2%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ++ P Y +EGP H P FK+ V N +++S P F + + AE +
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNR-KAAEQS 91
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVF 119
AAEVAL + K P+ V ETG+ KNLLQE + + +P Y +S G P F
Sbjct: 92 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-F 149
Query: 120 SCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 150 ICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 195
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
++K++LQE AQ++ P Y +EGP H P FK+ V N ++ S S + AE +A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFS 120
AEVAL + K P+ V ETG+ KNLLQE + + +P Y + G P F
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FL 152
Query: 121 CTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSSSS 165
CTVE+ G+ + G A+TKK A+ AA A A++ Q++ + + ++
Sbjct: 153 CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGAT 197
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFES-PTFCSTLRQAEHA 59
++K++LQE AQ+ P Y ++EGP H F++ V +G + S P F + + AE +
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNR-KAAEQS 73
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPV 118
AAEVAL L+K ++ + ETG+ KNLLQE + + +P+Y + G
Sbjct: 74 AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFSS 163
F+CTVE+ G+ +TG +TKK A+ +A A A++ K+ ++
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLAN 178
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 VYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
V+K+ LQE + + L PVY V+ GP H +F TV L GV + P ++A + +A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 147 LAAWSALKKQAKSAFSSSSFSPPSSESG 174
A AL++ AKS+ S S P E+G
Sbjct: 75 --AEVALRELAKSSELSQCVSQPVHETG 100
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 7/157 (4%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCS-TLRQAEHAA 60
YK++LQE Q++ LP Y +G H +FK+ V +GE F S TFC ++ AE A
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS-TFCHRRVKDAEQDA 97
Query: 61 AEVALDVLSKKGPSKVLAARV---LDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHG 116
A+VA D L ++ ++ V +D+ V+ K++L E + + P Y+ ++
Sbjct: 98 AKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVT 157
Query: 117 PVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
P S +V AG ++TG A+ KK A++ AA AA +L
Sbjct: 158 PYVS-SVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 89 KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALA 148
K LQE + G PVYT + +GP H F TV++ G+ +KKQA+ AAL+
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 149 AWSAL 153
AW+AL
Sbjct: 223 AWTAL 227
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE A P Y+ I GPDH+ F A V+ G S S +QAE AAA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSK-KQAEMAAA 220
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 234
Query: 148 AAWSALK 154
+AW A++
Sbjct: 235 SAWRAIR 241
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 233
Query: 62 EVA 64
E A
Sbjct: 234 ESA 236
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ + GVS+ ++KK+A++ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQAAE 244
Query: 148 AAWSALKKQA 157
+AW +++ A
Sbjct: 245 SAWRSIRAAA 254
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F AA G ++ + T S ++AE AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSK-KEAEQQAA 243
Query: 62 EVA 64
E A
Sbjct: 244 ESA 246
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + L +P Y SGP H F TV +AG ++ ++KK+A++ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQAAE 223
Query: 148 AAWSALKKQAKSA 160
+AW A++ + A
Sbjct: 224 SAWKAIRAATEKA 236
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +P Y GPDH F+A V G+T+ S S ++AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSK-KEAEQQAA 222
Query: 62 EVA 64
E A
Sbjct: 223 ESA 225
>sp|Q1D5X9|RNC_MYXXD Ribonuclease 3 OS=Myxococcus xanthus (strain DK 1622) GN=rnc PE=3
SV=1
Length = 260
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 88 YKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK LLQE +H LKL P Y V SGP H VF + L +F ++KK+A+++A
Sbjct: 173 YKTLLQEMAHER-LKLQPRYRVVSESGPEHSKVFEVELMLGETAFARATGRSKKEAEQSA 231
Query: 146 ALAAWSALKKQA 157
A A L++ A
Sbjct: 232 AQATLEKLREDA 243
>sp|A8Z6F6|RNC_CAMC1 Ribonuclease 3 OS=Campylobacter concisus (strain 13826) GN=rnc PE=3
SV=1
Length = 223
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q + +P+Y I GPDH F+ A+ NG+ S S+ +QA+ A
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEI-SRAVGSSKKQAQQLA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKIKK 223
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + +P Y + S GP H F + L G + +KKQAQ+ AA
Sbjct: 155 YKTALQEVTQATLGVIPTYELIGSFGPDHKKEFEIALLLNGKEISRAVGSSKKQAQQLAA 214
Query: 147 LAAWSALKK 155
A +KK
Sbjct: 215 KIALEKIKK 223
>sp|O69469|RNC_MYCLE Ribonuclease 3 OS=Mycobacterium leprae (strain TN) GN=rnc PE=3 SV=1
Length = 238
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 58 HAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGP 117
H EVA V+ + + + AA L +K LQE + G+ +P Y +GP H
Sbjct: 132 HHGIEVARQVILRLFGTLLDAAPTLGAGLDWKTSLQELTAARGMGVPSYVVTSTGPDHDK 191
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F+ V + + +KK+A++ AA AAW AL
Sbjct: 192 EFTAVVVVMDTEYGSGIGHSKKEAEQKAASAAWKAL 227
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +PSY GPDH F A V + S S ++AE AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSK-KEAEQKAA 220
Query: 62 EV---ALDVLSKKGPSKV 76
ALDVL G + V
Sbjct: 221 SAAWKALDVLGGVGKTSV 238
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
+K LQE + GL +P Y +GP H F+ T + G ++ ++KK+A++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQKAAG 230
Query: 148 AAWSALKKQA 157
AA+ AL ++
Sbjct: 231 AAYQALTAES 240
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
+K LQEL +PSY GPDH F A G + S ++AE AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSK-KEAEQKAA 229
Query: 62 EVALDVLS 69
A L+
Sbjct: 230 GAAYQALT 237
>sp|Q99MU3|DSRAD_MOUSE Double-stranded RNA-specific adenosine deaminase OS=Mus musculus
GN=Adar PE=1 SV=2
Length = 1178
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 6 LQELAQ---RSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
L E AQ ++C FNL S GP H PRFK V NG F P + + A+ AA
Sbjct: 461 LLEYAQFTSQTCDFNLIEQS----GPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 515
Query: 62 EVALDVLSKKGPSKV------LAARVLDE---------------TGVYKN-----LLQET 95
A+ +L ++ +K L+ ++E T ++ L E
Sbjct: 516 VKAMAILLREAKAKDSGQPEDLSHCPMEEDSEKPAEAQAPSSSATSLFSGKSPVTTLLEC 575
Query: 96 SHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
H+ G + GP H P F V + +F A +KK A++ AA A AL++
Sbjct: 576 MHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAMKALQE 635
Query: 156 QAKSAFSSSS 165
+A S+ S
Sbjct: 636 EAASSADDQS 645
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF P + + A+ AAE A+ L ++
Sbjct: 590 KEGPAHDPKFQYCVAVGAQTF-PPVSAPSKKVAKQMAAEEAMKALQEEAASSADDQSGGA 648
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 649 NTDSLDESMAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 705
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 706 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 748
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K LQE AQ F +PSY I + G +HAP F V NG+ + T C + AE AAA
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHA-TGCKK-KYAEIAAA 223
Query: 62 EVALDVLSKK 71
++ L+ ++K+
Sbjct: 224 KLMLEKVTKQ 233
>sp|Q52698|RNC_RHOCA Ribonuclease 3 OS=Rhodobacter capsulatus GN=rnc PE=1 SV=1
Length = 228
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P Y + R+GPDHAP+F+ AV +GET E+ + R AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQ--AGSKRNAEQAA 216
Query: 61 AEVALDVLSK 70
A+ L+ L +
Sbjct: 217 AKALLERLER 226
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K LQE + GL P Y T+ R GP H P F V LA +GE + + +++NA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLA----SGETEEAQAGSKRNAEQ 214
Query: 148 AAWSAL 153
AA AL
Sbjct: 215 AAAKAL 220
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR + YS + E GP H F + V+ NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQEL-GIGVGKSKKEAEQHA 232
Query: 61 AEVALDVLSKKG 72
A++AL L G
Sbjct: 233 AQMALQKLKTIG 244
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
+K+ LQE R G+ + Y+ + GP H F V L G K+KK+A+++AA
Sbjct: 174 FKSQLQELVQRDGIGVLEYSILEEKGPAHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAA 233
Query: 147 LAAWSALKKQAK 158
A LK K
Sbjct: 234 QMALQKLKTIGK 245
>sp|P55266|DSRAD_RAT Double-stranded RNA-specific adenosine deaminase OS=Rattus
norvegicus GN=Adar PE=2 SV=1
Length = 1175
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 53/226 (23%)
Query: 6 LQELAQ---RSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
L E AQ ++C FNL S GP H PRFK V NG F P + + A+ AA
Sbjct: 458 LLEYAQFTSQTCDFNLIEQS----GPSHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAA 512
Query: 62 EVALDVLSKKGPSK------VLAARVLDE---------------TGVYKN-----LLQET 95
A+ +L ++ +K L+ ++E T ++ L E
Sbjct: 513 VKAMAILLREAKAKDSGQPEELSNCPMEEDPEKPAESQPPSSSATSLFSGKSPVTTLLEC 572
Query: 96 SHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
H+ G + GP H P F V + +F A +KK A++ AA A AL++
Sbjct: 573 MHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALQE 632
Query: 156 QAKSAFSSSSFSPPSSESGTN-DEQDQAI----------IARYLAT 190
+A ++ S G N D D+++ + RYL T
Sbjct: 633 EAANSADDQS-------GGANTDSLDESVAPNKIRRIGELVRYLNT 671
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG----------- 72
+EGP H P+F+ V +TF S + S + A+ AAE A+ L ++
Sbjct: 587 KEGPAHDPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALQEEAANSADDQSGGA 645
Query: 73 ----------PSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGPGHGP 117
P+K+ R + E Y N L E + G +SGP H P
Sbjct: 646 NTDSLDESVAPNKI---RRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSGPPHEP 702
Query: 118 VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
F ++ G F A +KKQ +++AA AA L +++ A
Sbjct: 703 KFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKA 745
>sp|Q28V23|RNC_JANSC Ribonuclease 3 OS=Jannaschia sp. (strain CCS1) GN=rnc PE=3 SV=1
Length = 227
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
K LQE + G+ P YT V RSGP H PVF V L+ AK K+QA++ AA
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAKRQAEQQAA 217
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNF-NGETFESPTFCSTLRQAEHAA 60
K LQE AQ P+Y+ + R GPDHAP F+ V +GE E+ RQAE A
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQAKAK--RQAEQQA 216
Query: 61 AEVALDVLSK 70
A+ D+L++
Sbjct: 217 AK---DLLAQ 223
>sp|A7H186|RNC_CAMC5 Ribonuclease 3 OS=Campylobacter curvus (strain 525.92) GN=rnc PE=3
SV=1
Length = 223
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQE+ Q S P Y +R GPDH F+ A+ N + S ++ ++A+ A
Sbjct: 155 YKTALQEITQASLGTTPIYELVRSFGPDHKKEFEIALLLNDKEI-SRAIANSKKEAQQMA 213
Query: 61 AEVALDVLSK 70
A++AL+ + K
Sbjct: 214 AKIALEKMKK 223
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK LQE + + P+Y VRS GP H F + L + A +KK+AQ+ AA
Sbjct: 155 YKTALQEITQASLGTTPIYELVRSFGPDHKKEFEIALLLNDKEISRAIANSKKEAQQMAA 214
Query: 147 LAAWSALKK 155
A +KK
Sbjct: 215 KIALEKMKK 223
>sp|A7H5Y2|RNC_CAMJD Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1
Length = 225
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
A +AL ++ K P + A++L + YK LQE + + P Y TVR+ GP H
Sbjct: 131 AKTIALRLMEKNFPQ--IDAKILIKD--YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQ 186
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F + L G A +KK+AQ+ AA A L
Sbjct: 187 FEIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 221
>sp|Q9PM40|RNC_CAMJE Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rnc PE=1 SV=1
Length = 224
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
A +AL ++ K P + A++L + YK LQE + + P Y TVR+ GP H
Sbjct: 131 AKTIALRLIEKNFPQ--IDAKILIKD--YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQ 186
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F + L G A +KK+AQ+ AA A L
Sbjct: 187 FEIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 221
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>sp|Q5HSF8|RNC_CAMJR Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3
SV=1
Length = 224
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 63 VALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSC 121
+AL ++ K P + A++L + YK LQE + + P Y TVR+ GP H F
Sbjct: 134 IALRLIEKNFPQ--IDAKILIKD--YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEI 189
Query: 122 TVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
+ L G A +KK+AQ+ AA A L
Sbjct: 190 ALMLDGKELARAIAGSKKEAQQMAAKIALEKL 221
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVLSKK 71
A+ A++ L+ +
Sbjct: 219 AQFAINQLTHR 229
>sp|A8FNU7|RNC_CAMJ8 Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1
Length = 224
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +LQE+ Q P Y +R GPDH +F+ A+ +G+ + + ++A+ A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEL-ARAIAGSKKEAQQMA 213
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 214 AKIALEKL 221
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 60 AAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRS-GPGHGPV 118
A +AL ++ K P + A++L + YK LQE + + P Y TVR+ GP H
Sbjct: 131 AKTIALRLIEKNFPQ--IDAKILIKD--YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQ 186
Query: 119 FSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153
F + L G A +KK+AQ+ AA A L
Sbjct: 187 FEIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 221
>sp|A8I3B5|RNC_AZOC5 Ribonuclease 3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rnc PE=3 SV=1
Length = 235
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 89 KNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAAL 147
K +LQE + GL PVY V RSGP H P F V+L G+ +K+ AQK AA
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGLECAEAEGGSKQTAQKAAAS 221
Query: 148 A 148
A
Sbjct: 222 A 222
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNG 41
K LQE AQ P Y + R GPDHAPRF+ AV+ G
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPG 201
>sp|P55265|DSRAD_HUMAN Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens
GN=ADAR PE=1 SV=4
Length = 1226
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 36/187 (19%)
Query: 8 ELAQRSC-FNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALD 66
+ A ++C FN+ S GP H PRFK V NG F P + + A+ AA A+
Sbjct: 513 QFASQTCEFNMIEQS----GPPHEPRFKFQVVINGREF-PPAEAGSKKVAKQDAAMKAMT 567
Query: 67 VLSKKGPSKVLAARVLDETGVYKN----------------------------LLQETSHR 98
+L ++ +K +E+ Y L E H+
Sbjct: 568 ILLEEAKAKDSGKS--EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHK 625
Query: 99 AGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAK 158
G + GP H P F V + +F A +KK A++ AA A AL +A
Sbjct: 626 LGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALHGEAT 685
Query: 159 SAFSSSS 165
++ +S +
Sbjct: 686 NSMASDN 692
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 24 REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA------------------- 64
+EGP H P+F+ V +TF S + S + A+ AAE A
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSAPSK-KVAKQMAAEEAMKALHGEATNSMASDNQPE 695
Query: 65 ------LDVLSKKGPSKVLAARVLDETGVYKNL-----LQETSHRAGLKLPVYTTVRSGP 113
LD L P+KV R + E Y N L E + G +SGP
Sbjct: 696 GMISESLDNLESMMPNKV---RKIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGP 752
Query: 114 GHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160
H P F ++ G F A +KKQ ++ AA AA L + + A
Sbjct: 753 PHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+ LQEL Q+ +P Y + GPDH F +V+ NG+ + P T ++AE +
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVY-GPLSGKTKKEAEQSV 230
Query: 61 AEVALDVL 68
A+VA + L
Sbjct: 231 AKVAYENL 238
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+LLQE + +P Y + SGP H F +V + G + KTKK+A+++ A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 147 LAAWSAL 153
A+ L
Sbjct: 232 KVAYENL 238
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQE+ QR L Y + E GP H F A V NG+ + T +QAE +A
Sbjct: 160 YKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGS-GRTKKQAEQSA 218
Query: 61 AEVALDVL 68
A+ A++ L
Sbjct: 219 AQFAINKL 226
>sp|A6QCJ0|RNC_SULNB Ribonuclease 3 OS=Sulfurovum sp. (strain NBC37-1) GN=rnc PE=3 SV=1
Length = 223
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK LQEL Q + P Y + GPDH F+ AV + +T + S + A+ A
Sbjct: 155 YKTALQELTQATHAVTPGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGKSK-KDAQQKA 213
Query: 61 AEVALDVLSK 70
A++AL+ L K
Sbjct: 214 AKIALEALKK 223
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 44 FESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKL 103
FE+ L A E+++ +L + P L + D YK LQE +
Sbjct: 115 FEAIIGAVYLEAGLDTAKEISIKLLEECHPKIDLQSLSKD----YKTALQELTQATHAVT 170
Query: 104 PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155
P Y + SGP H F V L + K+KK AQ+ AA A ALKK
Sbjct: 171 PGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAAKIALEALKK 223
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIR-EGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK QLQEL Q P Y R EGPDH F V G+ + S + A+ AA
Sbjct: 168 YKTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSK-KDAQQAA 226
Query: 61 AEVALDVLS 69
AE AL +++
Sbjct: 227 AEKALQIIA 235
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 88 YKNLLQETSHRAGLKL-PVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNA 145
YK LQE + +A KL PVY R GP H F V L G G K+KK AQ+ A
Sbjct: 168 YKTQLQELT-QARYKLTPVYVLDREEGPDHDKTFHMNVVLEGQVLAGGSGKSKKDAQQAA 226
Query: 146 A 146
A
Sbjct: 227 A 227
>sp|A4IM67|RNC_GEOTN Ribonuclease 3 OS=Geobacillus thermodenitrificans (strain NG80-2)
GN=rnc PE=3 SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ S ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQELGVGVGRSK-KEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK +QEL Q + P Y ++E GPDH F A V N E + S ++AE A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSK-KEAEQNA 220
Query: 61 AEVALDVLSK 70
A A LSK
Sbjct: 221 AHFAFQKLSK 230
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 85 TGVYKNLLQETSHRAGLKLPVYTTVR-SGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQK 143
G YK ++QE P Y V+ SGP H F V++ K+KK+A++
Sbjct: 159 IGDYKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINNEVVGRGSGKSKKEAEQ 218
Query: 144 NAALAAWSALKK 155
NAA A+ L K
Sbjct: 219 NAAHFAFQKLSK 230
>sp|Q4FLS9|RNC_PELUB Ribonuclease 3 OS=Pelagibacter ubique (strain HTCC1062) GN=rnc PE=3
SV=1
Length = 222
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 92 LQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
LQE S + LP+Y + +GP H P+F V+L F +KK A++NAA
Sbjct: 157 LQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTAEGTSKKDAEQNAA 212
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAA 61
K +LQE + + LP Y I GP H P FK AV F + S + AE AA
Sbjct: 154 KTKLQEYSLKIFKVLPIYKLISNTGPRHKPLFKVAVKLKNTKFFTAEGTSK-KDAEQNAA 212
Query: 62 EVALDVLSKK 71
+ L + KK
Sbjct: 213 SLCLQDIFKK 222
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQE QR Y ++E GP H F + V N ET T S ++AE A
Sbjct: 191 FKSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNETLGVGTGRSK-KEAEQHA 249
Query: 61 AEVALDVLSKK 71
A+ AL LS+K
Sbjct: 250 AQQALITLSQK 260
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
+K+QLQEL QR Y+ + E GP H F A V NG+ + ++AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 61 AEVALDVL 68
A++AL+ L
Sbjct: 233 AQMALETL 240
>sp|Q310Z1|RNC_DESDG Ribonuclease 3 OS=Desulfovibrio desulfuricans (strain G20) GN=rnc
PE=3 SV=1
Length = 229
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 6 LQELAQRSCFNLPSYSCIREGPD-HAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVA 64
L ELA+ L +Y + +G + R +++V + FE+ L AA +
Sbjct: 83 LAELARE--LKLDTYLLLGKGEESQGGRTRSSVL--SDAFEAILGAIFLDGGYAAAGKTV 138
Query: 65 LDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTV 123
L V S + P AAR D K+ LQE + R + PVYT + SGP H +F +
Sbjct: 139 LHVFSSRWPQGAEAARTKDA----KSTLQELTQRLFKERPVYTLLGSSGPEHEKIFKVRL 194
Query: 124 EL-AGVSFTGEPAKTKKQAQKNAALA 148
L G + E K+ QK A LA
Sbjct: 195 LLPDGRALETEGQSVKRAEQKAAGLA 220
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKNQLQELAQRSCFNLPSYSCIRE-GPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAA 60
YK+QLQE QR + Y ++E GP H F + V+ NGE S ++AE A
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSK-KEAEQRA 224
Query: 61 AEVALDVLSK 70
A++AL L +
Sbjct: 225 AQMALAKLKQ 234
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 88 YKNLLQETSHRAGLKLPVYTTVRS-GPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAA 146
YK+ LQE R G + Y ++ GP H F V L G ++KK+A++ AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 147 LAAWSALKK 155
A + LK+
Sbjct: 226 QMALAKLKQ 234
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,153,027
Number of Sequences: 539616
Number of extensions: 9276871
Number of successful extensions: 22370
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 21927
Number of HSP's gapped (non-prelim): 597
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)