Query 041141
Match_columns 575
No_of_seqs 262 out of 1666
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:29:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 2.5E-29 8.5E-34 237.9 15.4 154 1-157 14-174 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 99.9 2.2E-25 7.6E-30 219.7 14.7 149 1-156 23-199 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 6E-23 2E-27 202.6 17.6 146 1-156 5-226 (236)
4 3adg_A F21M12.9 protein; HYL1, 99.8 7.6E-19 2.6E-23 144.2 10.1 69 86-154 3-72 (73)
5 3adj_A F21M12.9 protein; HYL1, 99.8 7.8E-19 2.7E-23 145.4 9.3 70 86-155 4-74 (76)
6 3adl_A RISC-loading complex su 99.8 2.6E-18 9E-23 146.8 10.4 72 85-157 14-86 (88)
7 1di2_A XLRBPA, double stranded 99.7 2.3E-18 7.9E-23 139.7 8.8 66 88-154 2-68 (69)
8 2cpn_A TAR RNA-binding protein 99.7 6E-18 2E-22 144.8 9.9 70 85-155 15-85 (89)
9 1uhz_A Staufen (RNA binding pr 99.7 8.9E-18 3.1E-22 143.7 10.2 70 85-155 5-75 (89)
10 2dix_A Interferon-inducible do 99.7 1.2E-17 4.2E-22 141.1 10.5 72 84-157 6-78 (84)
11 1ekz_A DSRBDIII, maternal effe 99.7 2.4E-18 8.4E-23 142.1 5.2 69 85-155 6-75 (76)
12 2khx_A Ribonuclease 3; drosha, 99.7 4.7E-18 1.6E-22 144.3 6.9 71 86-156 1-77 (85)
13 1x49_A Interferon-induced, dou 99.7 1.1E-17 3.8E-22 145.3 8.9 75 84-159 12-87 (97)
14 2l2n_A Hyponastic leave 1; DSR 99.7 1.8E-17 6.3E-22 145.2 10.2 74 84-157 15-89 (103)
15 2b7t_A Double-stranded RNA-spe 99.7 1.8E-17 6.1E-22 136.1 8.8 68 86-156 4-72 (73)
16 1whq_A RNA helicase A; double- 99.7 3E-17 1E-21 143.2 10.5 77 85-162 5-82 (99)
17 1x48_A Interferon-induced, dou 99.7 3.8E-17 1.3E-21 139.4 10.3 73 85-159 5-78 (88)
18 3llh_A RISC-loading complex su 99.7 2.3E-17 7.9E-22 141.1 8.7 74 84-159 12-86 (90)
19 2nug_A Ribonuclease III, RNAse 99.7 3E-18 1E-22 166.2 2.6 138 3-154 77-218 (221)
20 1x47_A DGCR8 protein; structur 99.7 1.2E-16 4.2E-21 138.9 10.1 76 84-161 14-90 (98)
21 1uil_A Double-stranded RNA-bin 99.7 1.3E-16 4.4E-21 142.2 10.4 75 86-161 26-105 (113)
22 3n3w_A Ribonuclease III; nucle 99.7 9E-19 3.1E-23 173.8 -6.0 147 3-156 101-248 (248)
23 1t4n_A Ribonuclease III; DSRBD 99.7 5.7E-17 2E-21 140.8 5.8 73 85-158 5-78 (94)
24 2dmy_A Spermatid perinuclear R 99.7 2.4E-16 8.2E-21 136.7 9.4 69 84-155 14-83 (97)
25 1o0w_A Ribonuclease III, RNAse 99.7 7E-17 2.4E-21 160.0 6.5 147 3-156 103-250 (252)
26 1t4o_A Ribonuclease III; RNT1P 99.6 2.6E-16 8.8E-21 141.5 6.7 74 85-159 7-81 (117)
27 2l33_A Interleukin enhancer-bi 99.6 5.3E-16 1.8E-20 133.7 8.3 68 85-155 13-81 (91)
28 1whn_A Hypothetical protein ri 99.6 7E-16 2.4E-20 140.5 9.3 72 85-158 25-97 (128)
29 2ljh_A Double-stranded RNA-spe 99.6 1.2E-15 4.2E-20 136.5 7.3 70 84-159 35-105 (114)
30 2a11_A Ribonuclease III, RNAse 99.6 4.6E-17 1.6E-21 159.9 -3.2 151 4-159 84-235 (242)
31 1di2_A XLRBPA, double stranded 99.6 3.8E-15 1.3E-19 120.7 7.5 67 1-69 1-68 (69)
32 2b7v_A Double-stranded RNA-spe 99.6 7.2E-15 2.5E-19 119.9 8.8 66 85-156 3-69 (71)
33 3adg_A F21M12.9 protein; HYL1, 99.6 9.8E-15 3.4E-19 119.7 8.8 68 1-69 4-72 (73)
34 1qu6_A Protein kinase PKR; dsR 99.6 3.9E-15 1.3E-19 140.8 7.3 72 85-157 12-84 (179)
35 3adj_A F21M12.9 protein; HYL1, 99.5 1.8E-14 6E-19 119.3 8.4 68 2-70 6-74 (76)
36 3p1x_A Interleukin enhancer-bi 99.5 6.2E-14 2.1E-18 116.1 8.7 67 87-156 5-72 (75)
37 2l2n_A Hyponastic leave 1; DSR 99.5 1.1E-13 3.6E-18 121.4 8.7 72 1-73 18-90 (103)
38 3adl_A RISC-loading complex su 99.5 1.1E-13 3.7E-18 118.3 8.4 68 2-71 17-85 (88)
39 2cpn_A TAR RNA-binding protein 99.5 1.1E-13 3.9E-18 118.2 8.3 68 2-71 18-86 (89)
40 1uhz_A Staufen (RNA binding pr 99.4 1.6E-13 5.3E-18 117.4 8.3 68 1-70 7-75 (89)
41 2khx_A Ribonuclease 3; drosha, 99.4 1.2E-13 4.2E-18 117.2 6.2 68 2-70 3-76 (85)
42 2yt4_A Protein DGCR8; DSRBD, R 99.4 2.9E-13 9.9E-18 133.4 9.8 71 84-156 20-91 (232)
43 3rv0_A K. polysporus DCR1; RNA 99.4 2.4E-15 8.3E-20 156.0 -5.3 150 3-159 170-324 (341)
44 2dix_A Interferon-inducible do 99.4 3.6E-13 1.2E-17 113.7 8.7 67 2-71 10-77 (84)
45 1ekz_A DSRBDIII, maternal effe 99.4 1.3E-13 4.4E-18 113.8 5.4 66 2-70 9-75 (76)
46 1x49_A Interferon-induced, dou 99.4 4.1E-13 1.4E-17 116.6 7.4 69 2-72 16-85 (97)
47 2b7t_A Double-stranded RNA-spe 99.4 6.3E-13 2.2E-17 109.0 8.0 65 2-70 6-71 (73)
48 3llh_A RISC-loading complex su 99.4 1E-12 3.4E-17 112.3 8.0 67 2-71 16-83 (90)
49 1whq_A RNA helicase A; double- 99.4 7.4E-13 2.5E-17 115.4 7.1 69 2-72 8-77 (99)
50 1x48_A Interferon-induced, dou 99.3 1.7E-12 5.9E-17 110.6 8.0 68 2-72 8-76 (88)
51 1uil_A Double-stranded RNA-bin 99.3 2.7E-12 9.1E-17 114.3 8.6 68 2-71 28-100 (113)
52 2l33_A Interleukin enhancer-bi 99.3 2.2E-12 7.4E-17 111.2 7.2 69 1-73 15-84 (91)
53 2dmy_A Spermatid perinuclear R 99.3 3.3E-12 1.1E-16 110.7 7.9 65 2-70 18-83 (97)
54 1t4n_A Ribonuclease III; DSRBD 99.3 1.2E-12 4.2E-17 113.6 5.0 66 2-69 8-74 (94)
55 1x47_A DGCR8 protein; structur 99.3 4.6E-12 1.6E-16 110.1 8.0 67 2-71 18-85 (98)
56 1whn_A Hypothetical protein ri 99.3 7.2E-12 2.5E-16 114.1 8.3 66 2-70 28-94 (128)
57 1t4o_A Ribonuclease III; RNT1P 99.2 3.7E-12 1.3E-16 114.6 5.2 66 2-69 10-76 (117)
58 2l3j_A Double-stranded RNA-spe 99.2 2.1E-11 7.3E-16 120.2 8.7 69 86-157 4-73 (236)
59 2ljh_A Double-stranded RNA-spe 99.2 2.5E-11 8.6E-16 108.6 5.7 64 2-72 39-103 (114)
60 2b7v_A Double-stranded RNA-spe 99.1 1.5E-10 5.2E-15 94.3 7.6 62 2-70 6-68 (71)
61 3p1x_A Interleukin enhancer-bi 99.1 2E-10 7E-15 95.0 7.7 67 3-73 7-74 (75)
62 3c4b_A Endoribonuclease dicer; 99.1 3.2E-11 1.1E-15 119.6 3.3 107 38-155 155-263 (265)
63 2nug_A Ribonuclease III, RNAse 99.0 2.4E-10 8.4E-15 110.7 6.5 66 2-69 152-218 (221)
64 1o0w_A Ribonuclease III, RNAse 99.0 3.1E-10 1E-14 112.5 7.3 69 2-71 181-250 (252)
65 2a11_A Ribonuclease III, RNAse 98.9 2.7E-10 9.2E-15 111.8 0.0 70 2-72 164-233 (242)
66 3n3w_A Ribonuclease III; nucle 98.8 2.9E-10 9.9E-15 112.8 0.0 68 2-70 179-247 (248)
67 3rv0_A K. polysporus DCR1; RNA 98.1 2.8E-07 9.5E-12 95.8 0.0 64 2-71 256-321 (341)
68 3c4b_A Endoribonuclease dicer; 97.5 0.00011 3.7E-09 72.8 6.3 65 2-70 199-263 (265)
69 2qvw_A GLP_546_48378_50642; di 96.2 0.00053 1.8E-08 78.0 -1.1 113 3-156 375-498 (756)
70 2kou_A Dicer-like protein 4; A 95.4 0.041 1.4E-06 48.0 7.5 71 87-159 5-84 (102)
71 3htx_A HEN1; HEN1, small RNA m 89.3 0.45 1.5E-05 55.4 6.5 69 87-159 18-99 (950)
72 2db2_A KIAA0890 protein; DSRM 88.1 1.1 3.7E-05 40.3 6.7 74 84-162 15-96 (119)
73 2kou_A Dicer-like protein 4; A 37.1 63 0.0022 27.8 6.0 68 3-73 7-83 (102)
74 3o2r_A Ribonuclease III; struc 24.3 2.2 7.5E-05 40.0 -5.9 67 3-72 101-167 (170)
75 3htx_A HEN1; HEN1, small RNA m 22.9 68 0.0023 37.7 4.7 38 32-70 58-95 (950)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.96 E-value=2.5e-29 Score=237.90 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=133.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCCChhhh-
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLA- 78 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ps~~~~- 78 (575)
.||+.||||||++++. |.|.++ ..||+|.+.|++.|.|+|..++. |.|.+||.|++.||+.+|..|..........
T Consensus 14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCE-EECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEe-cCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 3899999999999987 899988 68999999999999999988866 5899999999999999999998654211100
Q ss_pred ----hhc-ccccCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHH
Q 041141 79 ----ARV-LDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153 (575)
Q Consensus 79 ----~~i-~de~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L 153 (575)
... .....|||++|+||||++++.+ .|++.+.|++|.+.|+|+|.|+|..|+.|.|.|||+||++||+.||..|
T Consensus 92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L 170 (179)
T 1qu6_A 92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 (179)
T ss_dssp CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence 000 1135699999999999999987 8998899999999999999999999899999999999999999999999
Q ss_pred Hhhh
Q 041141 154 KKQA 157 (575)
Q Consensus 154 ~~~~ 157 (575)
....
T Consensus 171 ~~~~ 174 (179)
T 1qu6_A 171 LSEE 174 (179)
T ss_dssp HHCC
T ss_pred hccc
Confidence 8764
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=219.67 Aligned_cols=149 Identities=18% Similarity=0.125 Sum_probs=119.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCCC-hhh-
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPS-KVL- 77 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ps-~~~- 77 (575)
.||+.||||||++++.+|.|.++ ..|++ +.|++.|.|+|..++. |.|.+||.|++.||+.||..|....+. ...
T Consensus 23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGS-GTASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEee-cCCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 38999999999999999999998 67887 9999999999998877 489999999999999999999774321 000
Q ss_pred ----------hhh------------cccccCchhhHHHHHHHHcCCCCCeEE--Ee-ecCCCCCCeEEEEEEECCEeeee
Q 041141 78 ----------AAR------------VLDETGVYKNLLQETSHRAGLKLPVYT--TV-RSGPGHGPVFSCTVELAGVSFTG 132 (575)
Q Consensus 78 ----------~~~------------i~de~~nyKS~LQE~cQK~gl~lP~Ye--v~-esGP~H~p~Ftv~V~V~G~~fg~ 132 (575)
.+. ......|||+.||| ||++++.+|.|+ ++ +.||+|.+.|+|+|. +. ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~-~~~ 175 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KH-TVR 175 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TE-EEE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EE-EEE
Confidence 000 01124599999999 999999999999 55 789999999999886 44 567
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhh
Q 041141 133 EPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 133 G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
|.|.|||+|||+||+.||..|...
T Consensus 176 G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 176 GWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSTT
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999753
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.90 E-value=6e-23 Score=202.56 Aligned_cols=146 Identities=27% Similarity=0.280 Sum_probs=121.3
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCC------
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGP------ 73 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~p------ 73 (575)
.+|+.|++|++. +.+|.|+++ ..|++|.+.|++.|.|+|..++ |.|.+||.|++.||+.||..|.....
T Consensus 5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~~--G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFE--GSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEEE--EEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEEE--EecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 489999999987 467899998 6899999999999999998863 58999999999999999999875310
Q ss_pred ------------Chhhh----------------h-------------------hc----------c-----------ccc
Q 041141 74 ------------SKVLA----------------A-------------------RV----------L-----------DET 85 (575)
Q Consensus 74 ------------s~~~~----------------~-------------------~i----------~-----------de~ 85 (575)
..+.. . .+ . ...
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 00000 0 00 0 023
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
.|||++|||| +..|.|+++ +.||+|.+.|+|+|.|+|+.+ .|.|+|||+|||+||+.||..|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 5999999999 568999988 789999999999999999986 7999999999999999999999643
No 4
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.78 E-value=7.6e-19 Score=144.16 Aligned_cols=69 Identities=38% Similarity=0.576 Sum_probs=66.2
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeeccc-CCHHHHHHHHHHHHHHHHH
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNAALAAWSALK 154 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G-~SKKeAEQ~AAk~ALe~L~ 154 (575)
.|||+.||||||++++.+|.|+++.+||+|.+.|+|.|.|+|..++.|.| +|||+||++||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999966999999999999999999999999 9999999999999999985
No 5
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.77 E-value=7.8e-19 Score=145.45 Aligned_cols=70 Identities=36% Similarity=0.609 Sum_probs=66.9
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
.|||+.||||||++++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999998 7899999999999999999999999999999999999999999963
No 6
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=146.82 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=67.0
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
..|||+.||||||++++.+|.|+++ ++||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|...+
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 4699999999999999999999998 7899999999999999998 8999999999999999999999998654
No 7
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.75 E-value=2.3e-18 Score=139.70 Aligned_cols=66 Identities=29% Similarity=0.375 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHH
Q 041141 88 YKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154 (575)
Q Consensus 88 yKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~ 154 (575)
||+.||||||++++.+|.|+++ ++||+|++.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999997 7899999999999999998 9999999999999999999999986
No 8
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.74 E-value=6e-18 Score=144.78 Aligned_cols=70 Identities=29% Similarity=0.336 Sum_probs=66.6
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
..|||++||||||++++.+|.|+++ +.||+|.+.|+|+|.|+|. ++.|.|+|||+|||+||+.||..|.+
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999997 7899999999999999998 89999999999999999999999963
No 9
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.73 E-value=8.9e-18 Score=143.69 Aligned_cols=70 Identities=23% Similarity=0.156 Sum_probs=66.3
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
..|||++||||||++++.+|.|+++ +.||+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999999999997 7899999999999999997 88999999999999999999999964
No 10
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.73 E-value=1.2e-17 Score=141.12 Aligned_cols=72 Identities=26% Similarity=0.275 Sum_probs=66.4
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
...|||+.||||||+++ ..|.|+++ +.||+|.+.|+|.|.|+| .++.|.|+|||+|||+||+.||+.|....
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 34699999999999998 68999997 789999999999999999 88999999999999999999999997543
No 11
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.72 E-value=2.4e-18 Score=142.15 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=65.5
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
..|||+.||||||++++. |.|+++ ++||+|.+.|+|+|.|+| .++.|.|+|||+|||+||+.||..|.+
T Consensus 6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 469999999999999999 999998 789999999999999999 889999999999999999999999965
No 12
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-18 Score=144.26 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=65.3
Q ss_pred CchhhHHHHHHHH-----cCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 86 GVYKNLLQETSHR-----AGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 86 ~nyKS~LQE~cQK-----~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
.|||+.||||||+ .++.+|.|+++ ++||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 3899999999998 46789999998 78999999999999999999999999999999999999999887543
No 13
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=1.1e-17 Score=145.25 Aligned_cols=75 Identities=25% Similarity=0.393 Sum_probs=68.5
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
...|||++||||||++++. |.|+++ +.||+|.+.|+|.|.|+|..++.|.|+|||+|||+||+.||+.|......
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 87 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENKV 87 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 3569999999999999997 899987 78999999999999999999999999999999999999999999755433
No 14
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.8e-17 Score=145.21 Aligned_cols=74 Identities=36% Similarity=0.548 Sum_probs=67.0
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeeccc-CCHHHHHHHHHHHHHHHHHhhh
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G-~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
...|||+.||||||++++.+|.|+++..||+|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||..|....
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 3569999999999999999999999966999999999999999999999999 9999999999999999998654
No 15
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.71 E-value=1.8e-17 Score=136.13 Aligned_cols=68 Identities=29% Similarity=0.353 Sum_probs=63.6
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
.|||+.||||||+ +..|.|+++ ++||+|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|..+
T Consensus 4 ~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 5899999999996 778999997 789999999999999999987 8999999999999999999999864
No 16
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.71 E-value=3e-17 Score=143.18 Aligned_cols=77 Identities=23% Similarity=0.203 Sum_probs=70.0
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECC-EeeeecccCCHHHHHHHHHHHHHHHHHhhhcccCC
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAG-VSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAFS 162 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G-~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~~~s 162 (575)
..|||++||||||++ +..|.|++.+.||+|.+.|+|.|.|+| ..++.|.|+|||+|||+||+.||+.|........+
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~~ 82 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSE 82 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTSSCTT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 359999999999999 889999998889999999999999999 68899999999999999999999999876654333
No 17
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.70 E-value=3.8e-17 Score=139.43 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=67.0
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEeecCCCCCC-eEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGP-VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p-~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
..|||++||||||++++.+ .|+ .+.||+|.+ .|+|.|.|+|..++.|.|+|||+|||+||+.||+.|......
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 78 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 78 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3599999999999999976 999 888999999 799999999999999999999999999999999999876433
No 18
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=141.06 Aligned_cols=74 Identities=30% Similarity=0.341 Sum_probs=59.0
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
...|||+.||||||+++. .|.|+++ ++||+|++.|+|+|.|+|. ++.|.|+|||+|||+||+.||+.|......
T Consensus 12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~ 86 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSML 86 (90)
T ss_dssp -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-----
T ss_pred cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcccc
Confidence 356999999999999975 7999997 8899999999999999998 678999999999999999999999776543
No 19
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.70 E-value=3e-18 Score=166.24 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHH--HHHHHHHHHHhcCC-Chhhhh
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHA--AAEVALDVLSKKGP-SKVLAA 79 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~--AAk~AL~~L~k~~p-s~~~~~ 79 (575)
...|.++|.+.|+ ..|.....|... ..+-++.||+..++.|++.+.+. |.+++...+..... ...
T Consensus 77 ~~~la~~a~~l~l--~~~l~~~~~~~~-------~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~~~~~~~~--- 144 (221)
T 2nug_A 77 EEFFNLLAQKLEL--HKFIRIKRGKIN-------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIK--- 144 (221)
T ss_dssp HHHHHHHHHTTTG--GGTCBSCTTCCC-------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCh--HHhhccCCCccc-------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhhh---
Confidence 3568899988654 466655544322 45567789998889999999888 88888777754321 111
Q ss_pred hcccccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHH
Q 041141 80 RVLDETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALK 154 (575)
Q Consensus 80 ~i~de~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~ 154 (575)
......|||+.||||||++++..|.|+++ +.||+|.+.|+|.|.|+|. ++.|.|.|||+||++||+.||+.|.
T Consensus 145 -~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 145 -EGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp -TTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred -ccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 01224699999999999999999999997 7899999999999999999 9999999999999999999999985
No 20
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.68 E-value=1.2e-16 Score=138.86 Aligned_cols=76 Identities=25% Similarity=0.272 Sum_probs=69.3
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcccC
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSAF 161 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~~~ 161 (575)
...|||+.||||||++++.+|.|+++ +.||+ +.|+|.|.|+|..++.|.|+|||+|||+||+.||..|.....+..
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~ 90 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQT 90 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSCCC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45699999999999999999999998 68987 999999999999999999999999999999999999986655544
No 21
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.68 E-value=1.3e-16 Score=142.18 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=69.2
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEE-----CCEeeeecccCCHHHHHHHHHHHHHHHHHhhhccc
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVEL-----AGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKSA 160 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V-----~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~~ 160 (575)
.|||++||||||++++ .|.|++.+.||+|.+.|+|.|.| +|..++.|.|+|||+|||+||+.||..|......+
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ie 104 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIE 104 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4899999999999999 99999668999999999999999 68888999999999999999999999999886654
Q ss_pred C
Q 041141 161 F 161 (575)
Q Consensus 161 ~ 161 (575)
+
T Consensus 105 ~ 105 (113)
T 1uil_A 105 A 105 (113)
T ss_dssp C
T ss_pred c
Confidence 4
No 22
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.66 E-value=9e-19 Score=173.78 Aligned_cols=147 Identities=23% Similarity=0.208 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCCChhhhhhcc
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVL 82 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ps~~~~~~i~ 82 (575)
...|.++|.+.| +..|.....|...... ...-.+-++.||+.++|.|++.+.+.|.+++...+......... .
T Consensus 101 ~~~La~~a~~lg--L~~~l~~~~~e~~~~g-~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~~~~~l~~~~~----~ 173 (248)
T 3n3w_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGG-KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDA----K 173 (248)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHcC--cHHHhhcCchhhhcCC-CCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhhc----c
Confidence 357889999865 4577665433111100 01123567789999999999999999999999888876543221 1
Q ss_pred cccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 83 DETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 83 de~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
....|||+.||||||++++.+|.|+++ ++||+|.+.|+|.|.|+|+.++.|.|.|||+||++||+.||+.|+.+
T Consensus 174 ~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~l 248 (248)
T 3n3w_A 174 ILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGAL 248 (248)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 234699999999999999999999998 88999999999999999999999999999999999999999998753
No 23
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.66 E-value=5.7e-17 Score=140.75 Aligned_cols=73 Identities=18% Similarity=-0.035 Sum_probs=66.4
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCE-eeeecccCCHHHHHHHHHHHHHHHHHhhhc
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGV-SFTGEPAKTKKQAQKNAALAAWSALKKQAK 158 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~-~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~ 158 (575)
..|||+.||||||+. ...|.|++++.||+|++.|++.|.|+|. .++.|.|+|||+|||+||+.||..|.-+.+
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~k 78 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDF 78 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999997 4689999996699999999999999999 899999999999999999999998876644
No 24
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.66 E-value=2.4e-16 Score=136.67 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=64.1
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
...|||+.||||||++ ..|.|+++ +.||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||..|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 3569999999999996 68999998 789999999999999999998 899999999999999999999954
No 25
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.65 E-value=7e-17 Score=160.01 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCCChhhhhhcc
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVL 82 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ps~~~~~~i~ 82 (575)
...|.++|.+.|+ ..|.....|...... ...-.+-++.||+..++.|++.+.+.|.+++...+........ ..
T Consensus 103 ~~~la~~a~~lgL--~~~l~~~~~e~~~~~-~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~----~~ 175 (252)
T 1o0w_A 103 EEVLAMVSRKMNL--GKFLFLGKGEEKTGG-RDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIM----KG 175 (252)
T ss_dssp HHHHHHHHHHTTH--HHHCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHHHHHcCc--HHhhccCchhhhcCC-CCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh----hc
Confidence 3568899998654 466654332111000 0113455678999889999999999888888877765422111 01
Q ss_pred cccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 83 DETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 83 de~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
....|||+.||||||++++..|.|+++ +.||+|.+.|+|.|.|+|+.++.|.|.|||+||++||+.||+.|...
T Consensus 176 ~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 176 EMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 234699999999999999999999998 78999999999999999999999999999999999999999999643
No 26
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.63 E-value=2.6e-16 Score=141.47 Aligned_cols=74 Identities=18% Similarity=-0.043 Sum_probs=67.6
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCE-eeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGV-SFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~-~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
..|||+.||||||+. ..+|.|++++.||+|++.|++.|.|+|. .++.|.|.|||+|||+||+.||..|.-+.+.
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky 81 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFY 81 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999995 4789999986699999999999999999 8999999999999999999999998777655
No 27
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=133.69 Aligned_cols=68 Identities=31% Similarity=0.308 Sum_probs=63.3
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
..++|+.||||||+++ .|.|+++ ++||+|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|..
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3589999999999998 8899998 789999999999999999987 799999999999999999999963
No 28
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.62 E-value=7e-16 Score=140.46 Aligned_cols=72 Identities=26% Similarity=0.251 Sum_probs=66.8
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeeccc-CCHHHHHHHHHHHHHHHHHhhhc
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPA-KTKKQAQKNAALAAWSALKKQAK 158 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G-~SKKeAEQ~AAk~ALe~L~~~~~ 158 (575)
..|||+.||||||++++.+|.|+++.. +|.+.|+|.|.|+|..++.|.| +|||+|||+||+.||+.|.....
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~~~ 97 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEG 97 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCSSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcccc
Confidence 469999999999999999999999965 8999999999999999999999 99999999999999999975443
No 29
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.2e-15 Score=136.46 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=64.0
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
...|||++||||||+ |.|+++ ++||+|++.|+|+|.|+|+.+ .|.|+|||+|||+||+.||+.|......
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~ 105 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKDG 105 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTTC
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 356999999999984 899997 789999999999999999999 8999999999999999999999876544
No 30
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.58 E-value=4.6e-17 Score=159.90 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCC-CCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCCChhhhhhcc
Q 041141 4 NQLQELAQRSCF-NLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGPSKVLAARVL 82 (575)
Q Consensus 4 S~LQElcQK~gl-~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ps~~~~~~i~ 82 (575)
..|.++|.+.+. ++..|.....|...... ...-++-++.||+..++.|++.+.+.|.+++...+........ ..
T Consensus 84 ~~la~~a~~l~~~gL~~~l~~~~~e~~~~~-~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~~~~~~~~~~----~~ 158 (242)
T 2a11_A 84 QALADVARRLCAEGLGVHVLLGRGEANTGG-ADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAP----TL 158 (242)
T ss_dssp HHHHHHHHHHSSSCSGGGCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTHHHHHHTT----C-
T ss_pred HHHHHHHHHhhhhChHHHhhcCchhhhcCC-CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh----hc
Confidence 568899999610 34467665433211110 0013445678899888999999999888888777654321100 01
Q ss_pred cccCchhhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhhcc
Q 041141 83 DETGVYKNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQAKS 159 (575)
Q Consensus 83 de~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~~~ 159 (575)
....|||+.||||||++++..|.|+++..||+|.+.|+|.|.|+|+.++.|.|.|||+||++||+.||+.|......
T Consensus 159 ~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~~~ 235 (242)
T 2a11_A 159 GAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNA 235 (242)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcccc
Confidence 12469999999999999999999999889999999999999999999999999999999999999999999866533
No 31
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.57 E-value=3.8e-15 Score=120.74 Aligned_cols=67 Identities=28% Similarity=0.379 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHH
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLS 69 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~ 69 (575)
|+|+.||||||++++.+|.|.++ ..||+|.+.|++.|.|+|. ++. |.|.+||.|++.||+.+|..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~-G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VET-GSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-eecCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999987 6899999999999999997 766 5899999999999999999885
No 32
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.56 E-value=7.2e-15 Score=119.86 Aligned_cols=66 Identities=24% Similarity=0.234 Sum_probs=60.5
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
..|||+.||||| ..|.|+++ ++||+|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 468999999993 68999987 789999999999999999976 7999999999999999999999764
No 33
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.55 E-value=9.8e-15 Score=119.66 Aligned_cols=68 Identities=37% Similarity=0.559 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeeccccc-ccccHHHHHHHHHHHHHHH
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFC-STLRQAEHAAAEVALDVLS 69 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G-~SKKeAeq~AAk~AL~~L~ 69 (575)
.||+.||||||++++.+|.|+++.+||+|.+.|++.|.|+|..++.+ .| .+||.|++.||+.||..|.
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999999779999999999999999988774 78 8999999999999999885
No 34
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.55 E-value=3.9e-15 Score=140.76 Aligned_cols=72 Identities=28% Similarity=0.435 Sum_probs=67.3
Q ss_pred cCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 85 TGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 85 ~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
..|||+.||||||++++. |.|+++ +.||+|.+.|+|.|.|+|..++.|.|.|||+|||+||+.||+.|....
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~ 84 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEK 84 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 368999999999999987 899998 789999999999999999999999999999999999999999998653
No 35
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.53 E-value=1.8e-14 Score=119.27 Aligned_cols=68 Identities=29% Similarity=0.441 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||++++.+|.|.++ ..||+|.+.|++.|.|+|..++. |.|.+||.|++.||+.||..|..
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTG-AATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEEC-CCBSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEE-eccCCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999997 68999999999999999988877 47999999999999999998863
No 36
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=116.09 Aligned_cols=67 Identities=30% Similarity=0.329 Sum_probs=58.0
Q ss_pred chhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 87 VYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 87 nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
+.|+.|++|+|.. ..|.|+++ ++||+|++.|++.|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 5 ~~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 5 HGKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp -CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 3456666777765 58999998 799999999999999999988 7999999999999999999999643
No 37
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1.1e-13 Score=121.39 Aligned_cols=72 Identities=36% Similarity=0.543 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeeccccc-ccccHHHHHHHHHHHHHHHhcCC
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFC-STLRQAEHAAAEVALDVLSKKGP 73 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G-~SKKeAeq~AAk~AL~~L~k~~p 73 (575)
.||+.||||||++++.+|.|+++.+||+|.+.|++.|.|+|..++.+ .| .+||.|++.||+.||..|.....
T Consensus 18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 48999999999999999999999779999999999999999988874 78 89999999999999999986543
No 38
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=118.28 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++.+|.|+++ ..||+|.+.|++.|.|+|. ++. |.|.+||.|++.||+.||..|...
T Consensus 17 ~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 17 EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHHcc
Confidence 7999999999999999999997 6899999999999999997 666 589999999999999999999754
No 39
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.46 E-value=1.1e-13 Score=118.24 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++.+|.|+++ ..|++|.+.|++.|.|+|. ++. |.|.+||+|++.||+.||..|.+.
T Consensus 18 ~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEE-eeeCCHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999997 6899999999999999997 666 589999999999999999999743
No 40
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.45 E-value=1.6e-13 Score=117.42 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
.||+.||||||++++.+|.|+++ ..|++|.+.|++.|.|+|. +.. |.|.+||+|++.||+.||..|..
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VAT-GTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999999997 6899999999999999996 655 58999999999999999999964
No 41
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=117.16 Aligned_cols=68 Identities=32% Similarity=0.411 Sum_probs=61.7
Q ss_pred cHHHHHHHHHH-----cCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQR-----SCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK-----~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||+ .++.+|.|.++ ..||+|.+.|++.|.|+|..++. |.|.+||+|++.||+.||..|..
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~-G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC-GKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCC-EEESSHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHhH
Confidence 89999999998 46778999998 68999999999999999988876 58999999999999999988754
No 42
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=133.45 Aligned_cols=71 Identities=27% Similarity=0.320 Sum_probs=66.1
Q ss_pred ccCchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhh
Q 041141 84 ETGVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQ 156 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~ 156 (575)
...|||+.||||||++++.+|.|+++ +.||+ +.|+|.|.|+|..++.|.|.|||+||++||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34699999999999999999999998 78987 9999999999999999999999999999999999999653
No 43
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.42 E-value=2.4e-15 Score=156.01 Aligned_cols=150 Identities=13% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccH---HHHHHHHHHHHHHHhcCCChhhhh
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQ---AEHAAAEVALDVLSKKGPSKVLAA 79 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKe---Aeq~AAk~AL~~L~k~~ps~~~~~ 79 (575)
...|.++|.+.|+ ..|.....|+.....-...-.|-++.||+..+|.|+|. +.+.|.+++...+...........
T Consensus 170 ~~~La~iA~~lgL--~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~l~~~~~~~ 247 (341)
T 3rv0_A 170 NNNLFDWSTKLNF--TKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSSQMV 247 (341)
T ss_dssp HHHHHHHHHHTTT--TTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHCGGGC-
T ss_pred HHHHHHHHHHcCc--HHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4578999999654 56765322322110000012344578999999999999 899999998887765432211000
Q ss_pred hcccccCchhhHHHHHHHHcCCCC-CeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 80 RVLDETGVYKNLLQETSHRAGLKL-PVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 80 ~i~de~~nyKS~LQE~cQK~gl~l-P~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
.......|||+.||||||++++.. |.|+++ +.|| |++.|.|+|+.++.|.|.|||+|||+||+.||+.|+...
T Consensus 248 ~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~ 322 (341)
T 3rv0_A 248 IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLR 322 (341)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhh
Confidence 001124699999999999998766 599988 6675 999999999999999999999999999999999998775
Q ss_pred cc
Q 041141 158 KS 159 (575)
Q Consensus 158 ~~ 159 (575)
..
T Consensus 323 k~ 324 (341)
T 3rv0_A 323 KY 324 (341)
T ss_dssp --
T ss_pred hh
Confidence 44
No 44
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.42 E-value=3.6e-13 Score=113.72 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||+++ .+|.|+++ ..||+|.+.|++.|.|+| .+.. |.|.+||+|++.||+.||..|...
T Consensus 10 ~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 10 PIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCT-GEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEE-ECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEE-eeeCCHHHHHHHHHHHHHHHHhcc
Confidence 7999999999998 68999997 689999999999999999 6665 589999999999999999999753
No 45
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.41 E-value=1.3e-13 Score=113.81 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||++++. |.|.++ ..||+|.+.|++.|.|+| .++. |.|.+||.|++.||+.+|..|..
T Consensus 9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~-G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTE-GEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEE-ECCCSTTSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999998 999997 689999999999999999 6666 58999999999999999998864
No 46
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.39 E-value=4.1e-13 Score=116.57 Aligned_cols=69 Identities=26% Similarity=0.434 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
||+.||||||++++. |.|+++ ..||+|.+.|++.|.|+|..++. |.|.+||+|++.||+.||..|....
T Consensus 16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPE-AKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCC-EEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999987 799987 68999999999999999988876 5899999999999999999997553
No 47
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.39 E-value=6.3e-13 Score=109.04 Aligned_cols=65 Identities=34% Similarity=0.404 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||+ +.+|.|.++ ..||+|++.|++.|.|+|..+ . |.|.+||.|++.||+.||..|..
T Consensus 6 ~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 6 PKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-eecCCHHHHHHHHHHHHHHHHhc
Confidence 89999999997 678999997 689999999999999999987 4 58999999999999999999874
No 48
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=112.31 Aligned_cols=67 Identities=31% Similarity=0.344 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||+++. .|.|+++ .+|++|++.|++.|.|+|. ++. |.|.+||+|++.||+.||..|...
T Consensus 16 ~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 16 PISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCT-GQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp HHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEE-EEeCCHHHHHHHHHHHHHHHHHhc
Confidence 79999999999875 7999987 7899999999999999998 444 589999999999999999999765
No 49
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.36 E-value=7.4e-13 Score=115.41 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECC-eeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNG-ETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG-~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
||+.||||||++ +.+|.|++...|++|.+.|++.|.|+| ..++. |.|.+||+|++.||+.||..|....
T Consensus 8 ~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 8 IKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGM-GNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEE-EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEE-eccCCHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999 888999997789999999999999999 67766 5899999999999999999998653
No 50
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.34 E-value=1.7e-12 Score=110.64 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCC-ceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAP-RFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap-~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
||+.||||||++++.+ .|+ ...||+|.+ .|++.|.|+|..++. |.|.+||+|++.||+.||..|....
T Consensus 8 ~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 8 YIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGT-GSGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp HHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEE-EEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEE-eecCCHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999976 999 778999999 799999999998877 4899999999999999999998653
No 51
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.33 E-value=2.7e-12 Score=114.35 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEE-----CCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNF-----NGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtI-----nG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++ +|.|.+...||+|.+.|++.|.| +|..++. |.|.+||.|++.||+.||..|...
T Consensus 28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~-G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-EHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEE-CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999 89999558999999999999999 5777766 589999999999999999999865
No 52
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=111.21 Aligned_cols=69 Identities=30% Similarity=0.349 Sum_probs=62.2
Q ss_pred CcHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCC
Q 041141 1 MYKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGP 73 (575)
Q Consensus 1 myKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~p 73 (575)
++|+.||||||+++ .|.|+++ ..||+|++.|++.|.|+|..+ . |.|.+||+|++.||+.+|..|....+
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHhhcCC
Confidence 47999999999987 7899987 689999999999999999887 4 58999999999999999999986544
No 53
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.31 E-value=3.3e-12 Score=110.71 Aligned_cols=65 Identities=26% Similarity=0.372 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||++ .+|.|.++ ..||+|.+.|++.|.|+|..+ . |.|.+||.|++.||+.||..|..
T Consensus 18 ~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 18 LMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHhCC
Confidence 899999999996 68999998 689999999999999999988 4 58999999999999999999964
No 54
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.30 E-value=1.2e-12 Score=113.59 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCe-eeecccccccccHHHHHHHHHHHHHHH
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGE-TFESPTFCSTLRQAEHAAAEVALDVLS 69 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~-~fEAgG~G~SKKeAeq~AAk~AL~~L~ 69 (575)
||+.||||+|+. ..+|.|.++.+||+|++.|++.|.|+|. .++. |.|.|||+|++.||+.||..|.
T Consensus 8 ~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 8 AKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEE-EEESSHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHH
Confidence 799999999997 4689999997799999999999999998 7776 5899999999999999987665
No 55
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.29 E-value=4.6e-12 Score=110.08 Aligned_cols=67 Identities=30% Similarity=0.367 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++.+|.|.++ ..|++ +.|++.|.|+|..++. |.|.+||+|++.||+.||..|...
T Consensus 18 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 18 EVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGS-GTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999998 57887 9999999999998877 489999999999999999999754
No 56
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.27 E-value=7.2e-12 Score=114.09 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeeccccc-ccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFC-STLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G-~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||++++.+|.|.++.+ +|.+.|++.|.|+|..++.+ .| .+||+|++.||+.||..|..
T Consensus 28 ~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 28 PKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999866 89999999999999988774 78 99999999999999999964
No 57
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.25 E-value=3.7e-12 Score=114.59 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCe-eeecccccccccHHHHHHHHHHHHHHH
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGE-TFESPTFCSTLRQAEHAAAEVALDVLS 69 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~-~fEAgG~G~SKKeAeq~AAk~AL~~L~ 69 (575)
||+.||||||+. ..+|.|.++.+||+|++.|++.|.|+|. .++. |.|.+||+|++.||+.||..+.
T Consensus 10 ~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 10 AKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp HHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEE-EEESSHHHHHHHHHHHHHHCHH
T ss_pred chHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHH
Confidence 799999999995 4789999987799999999999999998 7776 5899999999999999986654
No 58
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.21 E-value=2.1e-11 Score=120.25 Aligned_cols=69 Identities=29% Similarity=0.350 Sum_probs=63.0
Q ss_pred CchhhHHHHHHHHcCCCCCeEEEe-ecCCCCCCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 86 GVYKNLLQETSHRAGLKLPVYTTV-RSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 86 ~nyKS~LQE~cQK~gl~lP~Yev~-esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
.|+|+.|++|++. +..|.|+++ +.||+|.+.|+|+|.|+|..+ .|.|.|||+|||+||+.||..|....
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~~ 73 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQFP 73 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhcc
Confidence 4899999999976 467999998 789999999999999999986 79999999999999999999998764
No 59
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.15 E-value=2.5e-11 Score=108.62 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
||+.||||||+ |.|+++ +.|++|++.|++.|.|+|..+ . |.|.+||+|++.||+.||..|....
T Consensus 39 ~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 39 TVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-L-GQGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp HHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHHcCC
Confidence 79999999985 799987 689999999999999999998 5 5899999999999999999997643
No 60
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.10 E-value=1.5e-10 Score=94.27 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
+|+.||||| .+|.|.++ ..|++|.+.|++.|.|+|..+ . |.|.+||.|++.||+.+|..|..
T Consensus 6 p~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 6 PVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp HHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHHHh
Confidence 689999993 57899987 689999999999999999976 4 58999999999999999998875
No 61
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.08 E-value=2e-10 Score=94.95 Aligned_cols=67 Identities=31% Similarity=0.398 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcCC
Q 041141 3 KNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKGP 73 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~p 73 (575)
|+-|++|+|.. ..|.|.++ .+||+|++.|++.|.|+|..+ . |.|.+||.|++.||+.||..|....+
T Consensus 7 K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 7 KNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp CCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-E-EEECCHHHHHHHHHHHHHHHHHccCC
Confidence 67899999985 57899998 699999999999999999988 4 58999999999999999999976543
No 62
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.08 E-value=3.2e-11 Score=119.58 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=80.2
Q ss_pred EECCeeeecccccccccHHH--HHHHHHHHHHHHhcCCChhhhhhcccccCchhhHHHHHHHHcCCCCCeEEEeecCCCC
Q 041141 38 NFNGETFESPTFCSTLRQAE--HAAAEVALDVLSKKGPSKVLAARVLDETGVYKNLLQETSHRAGLKLPVYTTVRSGPGH 115 (575)
Q Consensus 38 tInG~~fEAgG~G~SKKeAe--q~AAk~AL~~L~k~~ps~~~~~~i~de~~nyKS~LQE~cQK~gl~lP~Yev~esGP~H 115 (575)
++-++.||+.++|.|+|.+. +.|.+++...|........ ..++|+.|+||++.... .+.|. ..|+.|
T Consensus 155 ~~laD~~EAliGAiylD~G~~~~~~~~~i~~~~~~~i~~~~--------~~~~k~~l~el~~~~~~-~~~~~--~~~~~~ 223 (265)
T 3c4b_A 155 KAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFS--------ANVPRSPVRELLEMEPE-TAKFS--PAERTY 223 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--------HHSCCCHHHHHHHHCTT-TEEEC--CCEECT
T ss_pred hHHHHHHHHHhhheeeecCCCHHHHHHHHHHHHHHHHHhHh--------hcCCCCHHHHHHHhccC-Cceee--eccccC
Confidence 34567799998999999998 7777777777765421111 12566666666666542 22332 345578
Q ss_pred CCeEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 116 GPVFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 116 ~p~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
.+.|+|.|.|+|..++.|.|.|||+|||+||+.||+.|..
T Consensus 224 ~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 224 DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp TSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999974
No 63
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.02 E-value=2.4e-10 Score=110.72 Aligned_cols=66 Identities=30% Similarity=0.413 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHH
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLS 69 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~ 69 (575)
||+.||||||++++.+|.|.++ ..|++|.+.|++.|.|+|. ++. |.|.+||.|++.||+.||..|.
T Consensus 152 pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~-G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTL-GEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEE-EecCCHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999987 6899999999999999999 776 5899999999999999999886
No 64
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.02 E-value=3.1e-10 Score=112.46 Aligned_cols=69 Identities=33% Similarity=0.403 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++..|.|.++ ..|++|.+.|++.|.|+|..++. |.|.+||+|++.||+.||..|...
T Consensus 181 pkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHhhc
Confidence 7999999999999989999998 68999999999999999988876 589999999999999999998643
No 65
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.7e-10 Score=111.83 Aligned_cols=70 Identities=31% Similarity=0.433 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
||+.||||||++++..|.|.++..|++|.+.|++.|.|+|..++. |.|.+||.|++.||+.||..|....
T Consensus 164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS-GVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 799999999999998999999889999999999999999988776 4799999999999999999997654
No 66
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=98.85 E-value=2.9e-10 Score=112.83 Aligned_cols=68 Identities=31% Similarity=0.562 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCCCceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
||+.||||||++++.+|.|.++ ..|++|.+.|++.|.|+|..++. |.|.+||+|++.||+.||+.|..
T Consensus 179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-AIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999997 78999999999999999988877 48999999999999999988753
No 67
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.15 E-value=2.8e-07 Score=95.83 Aligned_cols=64 Identities=27% Similarity=0.298 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCCC-CceEEe-ecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhc
Q 041141 2 YKNQLQELAQRSCFNL-PSYSCI-REGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKK 71 (575)
Q Consensus 2 yKS~LQElcQK~gl~L-PeY~li-~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~ 71 (575)
||+.||||||++++.+ |.|.++ ..|+ |++.|.|+|..++. |.|.+||+|++.||+.||..|...
T Consensus 256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~-G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDE-AEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEE-EEeCCHHHHHHHHHHHHHHHhhhh
Confidence 7999999999998766 599987 4564 99999999998877 589999999999999999988754
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=97.50 E-value=0.00011 Score=72.77 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 2 yKS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
+|+.|+||.+.... .+.|. ..|..|.+.|++.|.|+|+.++. |.|.+||.|++.||+.||+.|..
T Consensus 199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~-G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFK-GVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence 57788888887532 22222 34557899999999999988776 58999999999999999999864
No 69
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=96.24 E-value=0.00053 Score=78.00 Aligned_cols=113 Identities=12% Similarity=-0.024 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeeccccccccc-HHHHHHHHHHHHHHHhcCCChhhhhhc
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLR-QAEHAAAEVALDVLSKKGPSKVLAARV 81 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKK-eAeq~AAk~AL~~L~k~~ps~~~~~~i 81 (575)
...|.++|.+.| +..|.....|+. ..-++-++.||+..+|.|++ .+.+.|.+++...+.........
T Consensus 375 n~~La~~A~~lg--L~~~l~~~~~e~------~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~---- 442 (756)
T 2qvw_A 375 NEALNYLVQTLG--LPQLAEFSNNLV------AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTV---- 442 (756)
T ss_dssp HHHHHHHHHHTT--CTTTCBCCSCC--------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC-----
T ss_pred chHHHHHHHHcC--hHHHhccCCCCC------CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccc----
Confidence 357899999955 568887666653 12345677899998999999 99998888888887765432211
Q ss_pred ccccCch-hhHHHHHHHHcCCCCCeEEEeecCCCCCCeEEEEEEECCEeeeecccCCHHHHH---------HHHHHHHHH
Q 041141 82 LDETGVY-KNLLQETSHRAGLKLPVYTTVRSGPGHGPVFSCTVELAGVSFTGEPAKTKKQAQ---------KNAALAAWS 151 (575)
Q Consensus 82 ~de~~ny-KS~LQE~cQK~gl~lP~Yev~esGP~H~p~Ftv~V~V~G~~fg~G~G~SKKeAE---------Q~AAk~ALe 151 (575)
.....|| |+.||||||++++ +.|.+.+.+.|| -.||+.||+
T Consensus 443 ~~~~~Dp~Kt~LqE~~q~~~i-----------------------------a~~v~~~~~~ak~~~~~~~~~~~aa~~aL~ 493 (756)
T 2qvw_A 443 GSACPDAVTKASKRVCMGEAG-----------------------------AHEFRSLVDYACEQGISVFCSSRVSTMFLE 493 (756)
T ss_dssp --CCCHHHHHHHHHHHTSCCC-----------------------------HHHHHHHHHHTTTTTCCCBSSSHHHHHHHH
T ss_pred cccccCchHHHHHHHHhccch-----------------------------hhhhhhhhhHHhhhccccchhhHHHHHHHH
Confidence 1234578 9999999996653 457778888888 679999998
Q ss_pred HHHhh
Q 041141 152 ALKKQ 156 (575)
Q Consensus 152 ~L~~~ 156 (575)
+|...
T Consensus 494 ~l~~~ 498 (756)
T 2qvw_A 494 RLRDI 498 (756)
T ss_dssp HHHHS
T ss_pred hhccc
Confidence 88765
No 70
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.39 E-value=0.041 Score=48.02 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHcC-----CCCCeEEEeecCCCCCCeEEEEEEECCE----eeeecccCCHHHHHHHHHHHHHHHHHhhh
Q 041141 87 VYKNLLQETSHRAG-----LKLPVYTTVRSGPGHGPVFSCTVELAGV----SFTGEPAKTKKQAQKNAALAAWSALKKQA 157 (575)
Q Consensus 87 nyKS~LQE~cQK~g-----l~lP~Yev~esGP~H~p~Ftv~V~V~G~----~fg~G~G~SKKeAEQ~AAk~ALe~L~~~~ 157 (575)
+.++.|+.||++.. ...|.|.+.+... ....| |+|.+-.. .+.+..-.|||.||+.||-.|...|.+.+
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence 56889999999873 3578899752211 12367 88888541 22233459999999999999999999987
Q ss_pred cc
Q 041141 158 KS 159 (575)
Q Consensus 158 ~~ 159 (575)
.-
T Consensus 83 ~L 84 (102)
T 2kou_A 83 VL 84 (102)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 71
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=89.30 E-value=0.45 Score=55.38 Aligned_cols=69 Identities=28% Similarity=0.473 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHcCCCCCeEEEee------cC------CCCCC-eEEEEEEECCEeeeecccCCHHHHHHHHHHHHHHHH
Q 041141 87 VYKNLLQETSHRAGLKLPVYTTVR------SG------PGHGP-VFSCTVELAGVSFTGEPAKTKKQAQKNAALAAWSAL 153 (575)
Q Consensus 87 nyKS~LQE~cQK~gl~lP~Yev~e------sG------P~H~p-~Ftv~V~V~G~~fg~G~G~SKKeAEQ~AAk~ALe~L 153 (575)
.||..++ ||.|- ...|++.+ .| |..-+ .|.|.+.+-+..+-.|..+.||+|||.||..||++|
T Consensus 18 ~pk~~~~---q~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~ 93 (950)
T 3htx_A 18 TPKAIIH---QKFGA-KASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKL 93 (950)
T ss_dssp CCHHHHH---HTTGG-GSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTT
T ss_pred CHHHHHH---HHhCc-ceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHHh
Confidence 5676554 33332 36787752 12 12222 789999987776667999999999999999999999
Q ss_pred Hhhhcc
Q 041141 154 KKQAKS 159 (575)
Q Consensus 154 ~~~~~~ 159 (575)
+..+..
T Consensus 94 g~~~~~ 99 (950)
T 3htx_A 94 GIRPQN 99 (950)
T ss_dssp TSTTTS
T ss_pred CCCccc
Confidence 886544
No 72
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.08 E-value=1.1 Score=40.28 Aligned_cols=74 Identities=26% Similarity=0.140 Sum_probs=50.0
Q ss_pred ccCchhhHHHHHHHHcCC-----CCCeEEEeecCCCCCCeEEEEEEEC---CEeeeecccCCHHHHHHHHHHHHHHHHHh
Q 041141 84 ETGVYKNLLQETSHRAGL-----KLPVYTTVRSGPGHGPVFSCTVELA---GVSFTGEPAKTKKQAQKNAALAAWSALKK 155 (575)
Q Consensus 84 e~~nyKS~LQE~cQK~gl-----~lP~Yev~esGP~H~p~Ftv~V~V~---G~~fg~G~G~SKKeAEQ~AAk~ALe~L~~ 155 (575)
+-..+|++|....|+.-- +.-.|-. .+| .++=.|++++. -.+| .|.|+.|-+||.+||.+|+++|+.
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g---~k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNG---PKKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCS---SSSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe-ecC---CceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHHHH
Confidence 345799999987776421 1112322 233 23335666654 3344 599999999999999999999999
Q ss_pred hhcccCC
Q 041141 156 QAKSAFS 162 (575)
Q Consensus 156 ~~~~~~s 162 (575)
++..++.
T Consensus 90 Lgll~p~ 96 (119)
T 2db2_A 90 WGLLGPR 96 (119)
T ss_dssp HTSSCTT
T ss_pred cCccCCC
Confidence 9877554
No 73
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=37.15 E-value=63 Score=27.78 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCC-----CCCceEEeecCCCCCCceEEEEEECCe----eeecccccccccHHHHHHHHHHHHHHHhcCC
Q 041141 3 KNQLQELAQRSCF-----NLPSYSCIREGPDHAPRFKAAVNFNGE----TFESPTFCSTLRQAEHAAAEVALDVLSKKGP 73 (575)
Q Consensus 3 KS~LQElcQK~gl-----~LPeY~li~eGP~Hap~Fta~VtInG~----~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~p 73 (575)
.+.|+.||++.-- ..|.|.+..... ....| |+|.+=.. .+.. ....+|+.|++.||-.|...|.+.+.
T Consensus 7 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g-~~~~sk~~AK~sAAf~Ac~~L~~~G~ 83 (102)
T 2kou_A 7 ISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIES-SLLPSTEAAKKDACLKAVHELHNLGV 83 (102)
T ss_dssp HHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEE-EEESSHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeC-CccccHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999632 348888642111 12356 88887431 1221 23589999999999999999988653
No 74
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=24.25 E-value=2.2 Score=39.96 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCCCceEEeecCCCCCCceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHhcC
Q 041141 3 KNQLQELAQRSCFNLPSYSCIREGPDHAPRFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSKKG 72 (575)
Q Consensus 3 KS~LQElcQK~gl~LPeY~li~eGP~Hap~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k~~ 72 (575)
...|.+++.+.| +..|.....|...... ...-++-++.||+..+|.|++.+.+.|.+++...+.+..
T Consensus 101 ~~~La~ia~~lg--L~~~l~~~~~~~~~~~-~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~~~~~~~ 167 (170)
T 3o2r_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGG-KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNF 167 (170)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTG-GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC--cHHhhhcCcchhhcCC-CCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 467899999955 4577765433211100 111345577899999999999999999999988887654
No 75
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=22.93 E-value=68 Score=37.72 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred ceEEEEEECCeeeecccccccccHHHHHHHHHHHHHHHh
Q 041141 32 RFKAAVNFNGETFESPTFCSTLRQAEHAAAEVALDVLSK 70 (575)
Q Consensus 32 ~Fta~VtInG~~fEAgG~G~SKKeAeq~AAk~AL~~L~k 70 (575)
.|.|.+.+-+..+-+ +...-||+|||.||+.||+.|..
T Consensus 58 ~~~c~~~lp~~~~~~-~~~~~kkd~eq~aa~~al~~~g~ 95 (950)
T 3htx_A 58 LYRCHLQLPEFSVVS-NVFKKKKDSEQSAAELALDKLGI 95 (950)
T ss_dssp EEEEEEECSSCEEEC-CCBSCHHHHHHHHHHHHHTTTTS
T ss_pred eEEEEeeCCCceEec-chhhccccHHHHHHHHHHHHhCC
Confidence 788888887766555 47888999999999999998863
Done!