Query 041143
Match_columns 973
No_of_seqs 888 out of 6567
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4asz_A BDNF/NT-3 growth factor 100.0 3E-53 1E-57 458.9 18.7 262 625-909 13-290 (299)
2 4aoj_A High affinity nerve gro 100.0 7.4E-53 2.5E-57 462.3 21.8 261 625-908 41-319 (329)
3 3omv_A RAF proto-oncogene seri 100.0 1.8E-52 6.1E-57 452.4 24.1 261 625-908 36-300 (307)
4 4gt4_A Tyrosine-protein kinase 100.0 6.1E-53 2.1E-57 458.5 18.2 260 625-906 26-304 (308)
5 4b9d_A Serine/threonine-protei 100.0 1.2E-51 4.1E-56 452.0 20.0 257 625-908 24-281 (350)
6 4fih_A Serine/threonine-protei 100.0 3.4E-51 1.1E-55 447.7 20.9 256 625-910 74-330 (346)
7 3fpq_A Serine/threonine-protei 100.0 1.7E-50 5.7E-55 433.9 23.9 250 628-908 29-287 (290)
8 4g3f_A NF-kappa-beta-inducing 100.0 1.8E-50 6.3E-55 440.7 21.7 255 625-910 58-318 (336)
9 3hmm_A TGF-beta receptor type- 100.0 1.3E-50 4.6E-55 441.5 19.0 269 625-909 3-298 (303)
10 4ase_A Vascular endothelial gr 100.0 3.1E-50 1E-54 444.9 20.0 272 617-909 56-348 (353)
11 4fie_A Serine/threonine-protei 100.0 5.6E-50 1.9E-54 448.8 22.1 256 625-910 151-407 (423)
12 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.4E-50 4.7E-55 436.1 16.2 250 625-901 32-284 (311)
13 3hyh_A Carbon catabolite-derep 100.0 1.1E-49 3.9E-54 423.5 21.6 252 625-908 13-267 (275)
14 3ubd_A Ribosomal protein S6 ki 100.0 4.5E-50 1.5E-54 432.5 12.9 244 625-896 24-271 (304)
15 4g31_A Eukaryotic translation 100.0 9.7E-48 3.3E-52 416.6 21.2 256 625-908 5-284 (299)
16 4b99_A Mitogen-activated prote 100.0 1.4E-46 4.8E-51 423.1 24.0 283 625-924 54-365 (398)
17 4f9c_A Cell division cycle 7-r 100.0 2.3E-45 7.9E-50 409.0 20.4 200 622-836 18-251 (361)
18 3rgz_A Protein brassinosteroid 100.0 7.3E-45 2.5E-49 449.8 26.2 91 364-454 651-744 (768)
19 2qkw_B Protein kinase; three-h 100.0 2.3E-44 7.9E-49 398.8 18.0 283 619-909 33-316 (321)
20 3v5w_A G-protein coupled recep 100.0 5.7E-44 1.9E-48 417.2 20.7 255 625-908 189-454 (689)
21 3uto_A Twitchin; kinase, muscl 100.0 1.3E-43 4.5E-48 419.0 23.7 258 624-909 156-416 (573)
22 3uim_A Brassinosteroid insensi 100.0 8.1E-44 2.8E-48 395.4 17.0 291 612-906 17-309 (326)
23 4ecn_A Leucine-rich repeat pro 100.0 6.1E-43 2.1E-47 428.9 26.0 408 21-449 264-818 (876)
24 4eco_A Uncharacterized protein 100.0 1.2E-42 4.2E-47 420.0 24.0 414 22-452 26-602 (636)
25 3p86_A Serine/threonine-protei 100.0 1.2E-42 4.2E-47 382.0 21.3 267 623-913 35-303 (309)
26 2psq_A Fibroblast growth facto 100.0 7E-42 2.4E-46 385.7 23.3 265 624-910 80-366 (370)
27 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-41 3.6E-46 375.1 23.7 225 22-301 2-236 (313)
28 3fe3_A MAP/microtubule affinit 100.0 7.5E-42 2.6E-46 378.3 22.6 255 624-909 14-270 (328)
29 3soc_A Activin receptor type-2 100.0 3.5E-42 1.2E-46 381.1 19.6 272 625-909 24-319 (322)
30 2nru_A Interleukin-1 receptor- 100.0 4.6E-41 1.6E-45 369.8 28.4 285 612-907 12-305 (307)
31 3fxz_A Serine/threonine-protei 100.0 1.3E-41 4.5E-46 371.8 23.8 256 624-909 19-275 (297)
32 3zgw_A Maternal embryonic leuc 100.0 1.2E-41 4E-46 378.8 22.6 257 623-909 8-266 (347)
33 3s95_A LIMK-1, LIM domain kina 100.0 5E-41 1.7E-45 370.0 26.0 261 625-910 10-284 (310)
34 4eqm_A Protein kinase; transfe 100.0 7.3E-41 2.5E-45 365.5 25.7 266 624-911 10-278 (294)
35 2c30_A Serine/threonine-protei 100.0 4.5E-41 1.5E-45 371.8 24.1 266 614-909 24-300 (321)
36 4hcu_A Tyrosine-protein kinase 100.0 1.7E-41 5.7E-46 365.7 19.9 256 625-908 10-266 (269)
37 3kul_A Ephrin type-A receptor 100.0 2.2E-41 7.6E-46 375.0 21.2 260 624-909 48-314 (325)
38 3sxs_A Cytoplasmic tyrosine-pr 100.0 4.3E-41 1.5E-45 362.3 21.6 258 624-909 7-265 (268)
39 2qol_A Ephrin receptor; recept 100.0 1.9E-41 6.4E-46 382.4 19.3 259 625-909 45-310 (373)
40 3cbl_A C-FES, proto-oncogene t 100.0 1.4E-41 4.9E-46 384.6 18.0 260 624-909 113-375 (377)
41 2izr_A Casein kinase I isoform 100.0 3E-40 1E-44 367.2 27.7 272 625-920 9-293 (330)
42 3niz_A Rhodanese family protei 100.0 2E-40 6.8E-45 365.0 24.2 274 623-909 19-306 (311)
43 3oz6_A Mitogen-activated prote 100.0 1.1E-40 3.8E-45 379.2 22.9 289 621-923 5-348 (388)
44 3lb7_A RAF proto-oncogene seri 100.0 2.4E-40 8.3E-45 363.5 24.5 263 625-910 36-302 (307)
45 3gen_A Tyrosine-protein kinase 100.0 6.4E-41 2.2E-45 364.1 19.7 258 624-909 23-281 (283)
46 1qcf_A Haematopoetic cell kina 100.0 4.5E-41 1.5E-45 390.0 18.6 259 623-909 186-445 (454)
47 3l9p_A Anaplastic lymphoma kin 100.0 5.2E-41 1.8E-45 378.3 18.6 264 624-909 70-346 (367)
48 1csn_A Casein kinase-1; phosph 100.0 1.2E-39 4E-44 357.0 28.2 270 624-916 9-291 (298)
49 1o6l_A RAC-beta serine/threoni 100.0 1.7E-40 5.7E-45 368.5 21.6 253 625-907 5-264 (337)
50 1luf_A Muscle-specific tyrosin 100.0 1E-40 3.5E-45 373.3 19.9 268 622-911 44-338 (343)
51 2yab_A Death-associated protei 100.0 2.5E-40 8.6E-45 370.4 22.9 258 623-908 10-277 (361)
52 3vhe_A Vascular endothelial gr 100.0 4.5E-41 1.5E-45 378.7 16.9 274 616-910 13-357 (359)
53 3tt0_A Basic fibroblast growth 100.0 2.2E-40 7.6E-45 375.7 22.6 266 624-911 68-355 (382)
54 1opk_A P150, C-ABL, proto-onco 100.0 8.7E-41 3E-45 391.2 19.7 258 624-908 219-478 (495)
55 3ugc_A Tyrosine-protein kinase 100.0 3.7E-41 1.3E-45 368.3 15.2 272 624-909 9-292 (295)
56 2bdw_A Hypothetical protein K1 100.0 2.9E-40 9.8E-45 371.1 22.7 260 622-908 26-289 (362)
57 3soa_A Calcium/calmodulin-depe 100.0 3.8E-40 1.3E-44 378.7 24.2 261 622-908 8-272 (444)
58 2ivs_A Proto-oncogene tyrosine 100.0 1.7E-40 5.9E-45 366.5 20.2 264 624-909 22-312 (314)
59 3q4u_A Activin receptor type-1 100.0 2.5E-40 8.5E-45 362.9 21.2 265 623-906 6-300 (301)
60 1tki_A Titin; serine kinase, m 100.0 2.7E-40 9.3E-45 365.2 21.5 256 624-909 4-263 (321)
61 3poz_A Epidermal growth factor 100.0 1.4E-40 4.9E-45 369.0 19.2 258 625-909 15-279 (327)
62 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.4E-40 4.8E-45 385.4 19.8 260 624-911 183-443 (452)
63 3qup_A Tyrosine-protein kinase 100.0 1.9E-40 6.4E-45 367.8 19.5 265 624-909 22-299 (323)
64 1mp8_A Focal adhesion kinase 1 100.0 2.4E-40 8.1E-45 359.2 19.7 259 624-909 14-277 (281)
65 3c0i_A Peripheral plasma membr 100.0 2.7E-40 9.1E-45 370.3 20.7 261 624-908 23-291 (351)
66 3p1a_A MYT1 kinase, membrane-a 100.0 5.5E-40 1.9E-44 361.6 22.8 251 624-907 56-308 (311)
67 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.2E-40 4.2E-45 372.1 17.8 256 623-908 21-285 (353)
68 3o0g_A Cell division protein k 100.0 7.3E-40 2.5E-44 357.4 23.0 275 625-911 2-290 (292)
69 4dc2_A Protein kinase C IOTA t 100.0 4.5E-40 1.5E-44 371.5 21.9 256 624-901 51-318 (396)
70 3tki_A Serine/threonine-protei 100.0 1.9E-40 6.6E-45 366.9 18.4 259 624-909 6-267 (323)
71 3op5_A Serine/threonine-protei 100.0 6.5E-40 2.2E-44 369.5 22.7 279 624-918 34-339 (364)
72 3v8s_A RHO-associated protein 100.0 1.3E-40 4.3E-45 378.2 16.9 266 618-909 62-335 (410)
73 3t9t_A Tyrosine-protein kinase 100.0 3E-40 1E-44 355.5 18.7 256 625-908 8-264 (267)
74 3dbq_A Dual specificity protei 100.0 4.6E-40 1.6E-44 367.6 20.9 257 625-909 9-279 (343)
75 3kmu_A ILK, integrin-linked ki 100.0 4.2E-40 1.5E-44 355.0 19.8 254 625-908 10-270 (271)
76 1t46_A HOMO sapiens V-KIT hard 100.0 3.9E-40 1.3E-44 363.5 19.8 265 624-909 22-308 (313)
77 3kfa_A Tyrosine-protein kinase 100.0 3.6E-40 1.2E-44 359.1 19.1 259 624-909 12-272 (288)
78 4aw2_A Serine/threonine-protei 100.0 1.1E-40 3.7E-45 381.7 15.3 270 617-909 66-344 (437)
79 2y0a_A Death-associated protei 100.0 1.4E-39 4.7E-44 360.7 23.6 259 623-908 9-276 (326)
80 1ob3_A PFPK5, cell division co 100.0 3.6E-40 1.2E-44 359.1 18.4 271 625-908 2-285 (288)
81 3gni_B Strad alpha; kinase fol 100.0 2.1E-39 7.2E-44 369.0 25.5 276 625-910 25-340 (389)
82 3qd2_B Eukaryotic translation 100.0 9.8E-40 3.4E-44 363.4 22.1 253 623-901 4-325 (332)
83 1fot_A TPK1 delta, CAMP-depend 100.0 8.5E-40 2.9E-44 360.1 21.1 251 625-908 6-263 (318)
84 1qpc_A LCK kinase; alpha beta 100.0 8.3E-40 2.8E-44 354.5 20.7 259 624-910 12-271 (279)
85 2zv2_A Calcium/calmodulin-depe 100.0 3.9E-40 1.3E-44 360.8 18.2 250 625-901 13-292 (298)
86 1k9a_A Carboxyl-terminal SRC k 100.0 7.6E-40 2.6E-44 378.9 21.7 253 624-909 192-446 (450)
87 3og7_A AKAP9-BRAF fusion prote 100.0 6.4E-40 2.2E-44 357.3 19.9 262 624-908 23-288 (289)
88 1cm8_A Phosphorylated MAP kina 100.0 2.9E-39 1E-43 363.8 25.8 277 624-918 24-322 (367)
89 4agu_A Cyclin-dependent kinase 100.0 2.2E-39 7.6E-44 357.1 24.3 276 624-911 2-292 (311)
90 3dtc_A Mitogen-activated prote 100.0 4.6E-40 1.6E-44 354.9 18.3 252 625-906 7-271 (271)
91 2zmd_A Dual specificity protei 100.0 1.1E-39 3.6E-44 370.4 22.1 257 625-909 56-326 (390)
92 3a8x_A Protein kinase C IOTA t 100.0 1.7E-39 5.6E-44 362.2 23.1 261 625-908 9-280 (345)
93 2eva_A TAK1 kinase - TAB1 chim 100.0 1.9E-39 6.6E-44 356.6 23.3 259 625-912 8-267 (307)
94 2pvf_A Fibroblast growth facto 100.0 1.2E-39 3.9E-44 363.1 21.5 266 624-911 34-321 (334)
95 1rjb_A FL cytokine receptor; k 100.0 5.2E-40 1.8E-44 367.7 18.7 266 623-909 43-335 (344)
96 3ttj_A Mitogen-activated prote 100.0 3.2E-39 1.1E-43 374.1 25.7 273 624-913 61-365 (464)
97 1xjd_A Protein kinase C, theta 100.0 3.8E-40 1.3E-44 366.6 17.1 252 622-901 14-269 (345)
98 3lxp_A Non-receptor tyrosine-p 100.0 7.4E-40 2.5E-44 361.9 19.4 272 627-911 33-313 (318)
99 2vd5_A DMPK protein; serine/th 100.0 2.5E-40 8.6E-45 376.0 16.0 269 617-909 53-333 (412)
100 4euu_A Serine/threonine-protei 100.0 3.2E-39 1.1E-43 357.1 24.5 272 625-906 9-307 (319)
101 3kk8_A Calcium/calmodulin depe 100.0 3.7E-39 1.3E-43 350.4 24.4 259 624-909 5-267 (284)
102 2pmi_A Negative RE, cyclin-dep 100.0 1.7E-39 5.9E-44 358.7 22.1 278 624-911 4-301 (317)
103 4fr4_A YANK1, serine/threonine 100.0 9.3E-40 3.2E-44 367.7 19.8 251 625-901 15-271 (384)
104 2h8h_A Proto-oncogene tyrosine 100.0 4E-40 1.4E-44 389.1 17.4 259 624-910 266-525 (535)
105 3mdy_A Bone morphogenetic prot 100.0 3.3E-39 1.1E-43 360.1 23.6 269 619-909 31-332 (337)
106 4f0f_A Serine/threonine-protei 100.0 2.5E-39 8.6E-44 352.3 22.1 254 625-906 19-287 (287)
107 3brb_A Proto-oncogene tyrosine 100.0 1.8E-39 6.2E-44 358.1 21.1 267 623-910 32-310 (313)
108 3uc3_A Serine/threonine-protei 100.0 2E-39 6.9E-44 364.3 21.7 260 625-912 20-283 (361)
109 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.3E-39 4.4E-44 363.6 19.9 251 625-908 41-298 (350)
110 2wqm_A Serine/threonine-protei 100.0 9.9E-39 3.4E-43 351.7 26.7 268 625-912 32-301 (310)
111 2jii_A Serine/threonine-protei 100.0 9.5E-40 3.2E-44 366.5 18.7 270 625-916 42-344 (352)
112 3is5_A Calcium-dependent prote 100.0 1.8E-39 6.1E-44 352.9 20.3 259 624-908 21-283 (285)
113 1mqb_A Ephrin type-A receptor 100.0 3E-39 1E-43 359.2 22.5 259 625-909 44-310 (333)
114 3kex_A Receptor tyrosine-prote 100.0 1E-39 3.6E-44 361.9 18.5 257 625-908 13-276 (325)
115 3rp9_A Mitogen-activated prote 100.0 6.7E-39 2.3E-43 372.9 26.2 282 624-916 52-409 (458)
116 2x4f_A Myosin light chain kina 100.0 2.3E-39 7.9E-44 365.1 21.5 253 628-908 92-347 (373)
117 3a62_A Ribosomal protein S6 ki 100.0 2E-39 6.9E-44 359.6 20.7 255 624-908 16-281 (327)
118 3cc6_A Protein tyrosine kinase 100.0 2.2E-39 7.6E-44 351.5 20.4 259 624-909 11-274 (281)
119 3uzp_A CKI-delta, CKID, casein 100.0 1.4E-38 4.8E-43 348.0 26.6 269 624-915 8-287 (296)
120 4hgt_A Casein kinase I isoform 100.0 7.1E-39 2.4E-43 350.3 24.3 269 622-913 6-285 (296)
121 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.7E-39 6E-44 366.3 19.9 255 624-909 64-340 (365)
122 1kob_A Twitchin; kinase, intra 100.0 4.6E-39 1.6E-43 363.5 23.3 257 624-908 50-309 (387)
123 3ork_A Serine/threonine protei 100.0 1.6E-39 5.5E-44 358.0 18.9 255 624-901 11-273 (311)
124 4e5w_A Tyrosine-protein kinase 100.0 5.1E-40 1.7E-44 360.6 14.8 271 625-908 21-302 (302)
125 2h34_A Serine/threonine-protei 100.0 3E-39 1E-43 355.5 20.9 263 624-910 33-298 (309)
126 3llt_A Serine/threonine kinase 100.0 1.4E-39 4.6E-44 366.7 18.5 264 621-901 31-355 (360)
127 1xbb_A Tyrosine-protein kinase 100.0 3.2E-39 1.1E-43 352.2 20.8 259 624-909 15-280 (291)
128 1u5q_A Serine/threonine protei 100.0 8E-39 2.7E-43 357.3 24.4 254 624-909 53-311 (348)
129 3kn6_A Ribosomal protein S6 ki 100.0 2.4E-39 8.2E-44 358.5 19.9 254 630-909 16-276 (325)
130 1u59_A Tyrosine-protein kinase 100.0 4.8E-39 1.6E-43 350.1 21.9 260 625-911 9-275 (287)
131 2i1m_A Macrophage colony-stimu 100.0 1.3E-39 4.4E-44 362.7 17.8 265 624-909 45-327 (333)
132 2i0e_A Protein kinase C-beta I 100.0 1.6E-39 5.4E-44 362.8 18.5 251 623-901 18-276 (353)
133 2eue_A Carbon catabolite derep 100.0 4.3E-39 1.5E-43 348.1 21.2 253 625-909 13-268 (275)
134 1p4o_A Insulin-like growth fac 100.0 2.2E-39 7.5E-44 359.0 19.4 266 622-909 22-300 (322)
135 3h4j_B AMPK kdaid, SNF1-like p 100.0 4.8E-40 1.6E-44 364.3 13.9 253 625-909 9-264 (336)
136 2xir_A Vascular endothelial gr 100.0 1.3E-39 4.5E-44 359.8 17.3 274 616-910 18-312 (316)
137 2w4o_A Calcium/calmodulin-depe 100.0 2.6E-39 9E-44 361.8 19.8 256 623-908 51-310 (349)
138 3lxl_A Tyrosine-protein kinase 100.0 2.1E-39 7.2E-44 359.9 18.7 274 625-910 23-305 (327)
139 2r5t_A Serine/threonine-protei 100.0 1.8E-39 6.1E-44 364.9 18.3 249 625-901 38-289 (373)
140 3hko_A Calcium/calmodulin-depe 100.0 2.1E-39 7.3E-44 362.9 18.8 270 620-910 21-337 (345)
141 3lzb_A Epidermal growth factor 100.0 2.1E-39 7.3E-44 359.4 18.4 258 625-909 15-279 (327)
142 4fl3_A Tyrosine-protein kinase 100.0 2.2E-39 7.6E-44 389.0 19.8 252 631-909 375-632 (635)
143 3g2f_A Bone morphogenetic prot 100.0 1.3E-39 4.6E-44 363.1 16.3 274 625-913 13-323 (336)
144 2rku_A Serine/threonine-protei 100.0 1.9E-38 6.4E-43 346.7 25.0 256 624-909 14-271 (294)
145 3n9x_A Phosphotransferase; mal 100.0 1.2E-38 4.1E-43 367.1 24.5 283 624-917 25-375 (432)
146 2y94_A 5'-AMP-activated protei 100.0 3.8E-39 1.3E-43 372.6 20.3 253 625-908 16-271 (476)
147 2v62_A Serine/threonine-protei 100.0 9.2E-39 3.2E-43 357.3 22.7 266 625-908 37-328 (345)
148 3f3z_A Calcium/calmodulin-depe 100.0 9.6E-39 3.3E-43 345.7 22.1 256 623-909 7-267 (277)
149 3c1x_A Hepatocyte growth facto 100.0 2.8E-39 9.5E-44 364.2 18.4 260 626-911 90-358 (373)
150 1t4h_A Serine/threonine-protei 100.0 1.6E-38 5.5E-43 346.5 23.7 253 626-908 27-287 (290)
151 4ejn_A RAC-alpha serine/threon 100.0 2E-39 6.9E-44 375.6 17.6 255 624-908 147-409 (446)
152 2fst_X Mitogen-activated prote 100.0 3.7E-39 1.3E-43 362.6 19.2 276 624-917 28-325 (367)
153 2ozo_A Tyrosine-protein kinase 100.0 3.9E-39 1.3E-43 386.0 20.5 253 632-911 343-601 (613)
154 1b6c_B TGF-B superfamily recep 100.0 1.1E-38 3.6E-43 356.7 22.7 275 617-910 34-338 (342)
155 4fvq_A Tyrosine-protein kinase 100.0 2.8E-39 9.6E-44 352.3 17.5 251 624-908 7-275 (289)
156 4aaa_A Cyclin-dependent kinase 100.0 2E-38 6.7E-43 352.7 24.6 272 624-908 24-311 (331)
157 3sv0_A Casein kinase I-like; t 100.0 3.9E-38 1.3E-42 364.9 27.7 267 624-913 6-283 (483)
158 2a2a_A Death-associated protei 100.0 1.3E-38 4.6E-43 352.4 22.8 258 623-907 10-276 (321)
159 1fvr_A Tyrosine-protein kinase 100.0 1.1E-38 3.6E-43 354.3 22.0 263 625-911 25-303 (327)
160 3g33_A Cell division protein k 100.0 5.1E-39 1.8E-43 353.6 19.3 274 622-908 6-301 (308)
161 2y7j_A Phosphorylase B kinase 100.0 2.2E-38 7.6E-43 356.6 24.7 263 617-907 86-363 (365)
162 2qr7_A Ribosomal protein S6 ki 100.0 6.8E-39 2.3E-43 356.8 20.2 261 623-912 20-286 (342)
163 2w5a_A Serine/threonine-protei 100.0 5.3E-39 1.8E-43 348.2 18.9 257 624-903 5-269 (279)
164 2owb_A Serine/threonine-protei 100.0 2.3E-38 7.9E-43 352.5 24.2 256 624-909 40-297 (335)
165 3f66_A Hepatocyte growth facto 100.0 8.4E-39 2.9E-43 350.2 20.2 261 625-911 25-294 (298)
166 2ac3_A MAP kinase-interacting 100.0 1.7E-38 5.9E-43 350.9 22.9 272 625-909 12-301 (316)
167 2acx_A G protein-coupled recep 100.0 3.1E-39 1.1E-43 377.8 17.7 260 624-908 183-449 (576)
168 3gxj_A TGF-beta receptor type- 100.0 1.5E-40 5.1E-45 365.0 6.3 267 624-909 2-298 (303)
169 2yfx_A Tyrosine-protein kinase 100.0 8E-39 2.8E-43 355.2 20.0 264 624-909 29-305 (327)
170 3dls_A PAS domain-containing s 100.0 5.1E-39 1.7E-43 357.3 18.4 250 622-908 21-279 (335)
171 1x8b_A WEE1HU, WEE1-like prote 100.0 1.6E-38 5.4E-43 346.1 21.6 250 622-901 8-279 (289)
172 2xrw_A Mitogen-activated prote 100.0 2.3E-38 7.7E-43 357.6 23.7 271 624-911 24-326 (371)
173 3pls_A Macrophage-stimulating 100.0 1.2E-38 4.1E-43 348.9 20.8 260 626-911 22-290 (298)
174 4eut_A Serine/threonine-protei 100.0 7.3E-39 2.5E-43 364.9 19.5 275 625-909 9-310 (396)
175 3fdn_A Serine/threonine-protei 100.0 8.9E-39 3E-43 346.4 18.9 255 624-910 8-264 (279)
176 3qyz_A Mitogen-activated prote 100.0 5.5E-38 1.9E-42 353.8 26.1 278 624-916 26-326 (364)
177 3bhy_A Death-associated protei 100.0 2.7E-38 9.3E-43 343.4 22.6 258 624-908 4-270 (283)
178 1byg_A CSK, protein (C-termina 100.0 7.5E-39 2.6E-43 346.8 18.1 253 624-909 20-274 (278)
179 3byv_A Rhoptry kinase; malaria 100.0 1.7E-39 5.7E-44 367.9 13.2 246 624-901 72-359 (377)
180 3gbz_A Kinase, CMGC CDK; ssgci 100.0 5.5E-39 1.9E-43 356.6 17.0 273 622-908 31-323 (329)
181 3c4z_A Rhodopsin kinase; Ser/T 100.0 7.9E-39 2.7E-43 373.8 19.1 257 625-901 185-448 (543)
182 2buj_A Serine/threonine-protei 100.0 1.5E-38 5.1E-43 351.5 20.0 263 624-908 28-306 (317)
183 3mwu_A Calmodulin-domain prote 100.0 1.8E-38 6E-43 371.9 21.7 261 623-911 20-284 (486)
184 3mi9_A Cell division protein k 100.0 4E-38 1.4E-42 353.3 23.7 272 625-909 17-317 (351)
185 1vzo_A Ribosomal protein S6 ki 100.0 2.4E-39 8.4E-44 363.1 13.6 255 624-901 53-321 (355)
186 1nxk_A MAP kinase-activated pr 100.0 1.8E-38 6.1E-43 361.4 20.9 256 625-909 61-327 (400)
187 2w1i_A JAK2; chromosomal rearr 100.0 4.8E-39 1.6E-43 356.8 15.7 272 625-910 41-324 (326)
188 3eqc_A Dual specificity mitoge 100.0 1.2E-38 4E-43 359.0 19.1 270 624-910 32-331 (360)
189 2a19_B Interferon-induced, dou 100.0 1.8E-38 6.2E-43 344.8 19.8 251 622-909 8-275 (284)
190 3lm5_A Serine/threonine-protei 100.0 7.2E-39 2.5E-43 355.4 16.9 266 620-910 23-294 (327)
191 3lij_A Calcium/calmodulin depe 100.0 2.3E-38 7.9E-43 371.5 22.1 258 623-908 35-296 (494)
192 3rgf_A Cyclin-dependent kinase 100.0 4E-38 1.4E-42 360.2 23.4 278 623-911 18-341 (405)
193 3mtl_A Cell division protein k 100.0 4.7E-39 1.6E-43 356.4 15.0 272 625-911 2-289 (324)
194 3fme_A Dual specificity mitoge 100.0 1.1E-38 3.9E-43 347.6 17.7 261 624-909 6-272 (290)
195 2jam_A Calcium/calmodulin-depe 100.0 5.5E-38 1.9E-42 344.7 23.1 257 623-909 7-267 (304)
196 4exu_A Mitogen-activated prote 100.0 6.7E-38 2.3E-42 353.8 24.1 273 624-915 41-335 (371)
197 2yex_A Serine/threonine-protei 100.0 2.5E-38 8.5E-43 342.3 19.6 254 623-901 5-261 (276)
198 3cok_A Serine/threonine-protei 100.0 1.9E-38 6.5E-43 343.6 18.6 256 624-908 10-267 (278)
199 3a7i_A MST3 kinase, serine/thr 100.0 7E-38 2.4E-42 343.7 23.3 254 625-909 22-276 (303)
200 3q5i_A Protein kinase; CDPK, m 100.0 6.1E-38 2.1E-42 368.9 23.9 260 623-911 34-309 (504)
201 3i6u_A CDS1, serine/threonine- 100.0 2E-38 6.7E-43 363.6 18.5 259 622-908 132-404 (419)
202 3ll6_A Cyclin G-associated kin 100.0 3E-38 1E-42 352.2 19.4 256 625-909 28-309 (337)
203 2r3i_A Cell division protein k 100.0 6.1E-38 2.1E-42 343.5 21.4 273 625-909 3-289 (299)
204 1j1b_A Glycogen synthase kinas 100.0 1.3E-37 4.4E-42 356.9 24.8 270 625-912 54-345 (420)
205 3an0_A Dual specificity mitoge 100.0 2.8E-38 9.6E-43 352.9 18.6 261 624-910 50-317 (340)
206 2h6d_A 5'-AMP-activated protei 100.0 3.5E-38 1.2E-42 341.2 18.7 254 625-909 11-267 (276)
207 1u46_A ACK-1, activated CDC42 100.0 2.4E-38 8.4E-43 345.2 17.6 259 625-908 18-284 (291)
208 3nyv_A Calmodulin-domain prote 100.0 2.6E-38 8.9E-43 370.7 19.0 261 623-911 24-289 (484)
209 3pg1_A Mitogen-activated prote 100.0 9.2E-38 3.2E-42 352.0 22.6 283 616-912 13-325 (362)
210 3eb0_A Putative uncharacterize 100.0 1.1E-37 3.7E-42 353.8 22.6 272 621-909 3-327 (383)
211 3kvw_A DYRK2, dual specificity 100.0 1.7E-37 5.8E-42 356.7 24.5 268 624-909 96-414 (429)
212 1ua2_A CAK, cell division prot 100.0 6.2E-38 2.1E-42 350.7 20.1 275 622-909 7-297 (346)
213 3pfq_A PKC-B, PKC-beta, protei 100.0 3.6E-38 1.2E-42 381.1 19.5 251 623-901 339-597 (674)
214 1z57_A Dual specificity protei 100.0 2.7E-37 9.1E-42 344.8 25.1 267 624-909 13-334 (339)
215 3cek_A Dual specificity protei 100.0 7.2E-38 2.5E-42 345.3 20.1 258 624-909 27-298 (313)
216 2vgo_A Serine/threonine-protei 100.0 5.7E-38 1.9E-42 341.0 19.0 253 625-909 14-268 (284)
217 2j0j_A Focal adhesion kinase 1 100.0 6.6E-38 2.3E-42 377.6 20.8 260 623-909 388-652 (656)
218 2i6l_A Mitogen-activated prote 100.0 1E-37 3.4E-42 345.3 20.6 273 624-912 10-314 (320)
219 3coi_A Mitogen-activated prote 100.0 1.1E-37 3.6E-42 350.1 21.0 274 625-917 24-319 (353)
220 4e7w_A Glycogen synthase kinas 100.0 2E-37 7E-42 352.3 23.2 271 625-912 40-330 (394)
221 2clq_A Mitogen-activated prote 100.0 1.8E-37 6.1E-42 339.0 21.8 257 626-908 23-283 (295)
222 2y4i_B KSR2, HKSR2, kinase sup 100.0 7.1E-39 2.4E-43 354.4 10.8 261 624-911 32-305 (319)
223 2wei_A Calmodulin-domain prote 100.0 1.3E-37 4.4E-42 338.7 20.4 263 621-911 18-284 (287)
224 2wtk_C Serine/threonine-protei 100.0 2.2E-37 7.4E-42 340.2 22.4 262 623-912 3-272 (305)
225 2ycf_A Serine/threonine-protei 100.0 1.3E-37 4.4E-42 344.7 20.7 259 622-907 7-278 (322)
226 2vwi_A Serine/threonine-protei 100.0 2.1E-38 7.3E-43 347.8 14.1 269 624-908 14-292 (303)
227 3com_A Serine/threonine-protei 100.0 3.5E-37 1.2E-41 340.0 23.9 258 622-909 26-284 (314)
228 2b9h_A MAP kinase FUS3, mitoge 100.0 2.3E-37 7.9E-42 347.5 22.8 275 624-914 10-316 (353)
229 2j7t_A Serine/threonine-protei 100.0 5E-38 1.7E-42 344.7 16.7 257 624-908 18-280 (302)
230 1wak_A Serine/threonine-protei 100.0 9.4E-38 3.2E-42 356.7 19.4 264 624-901 36-391 (397)
231 3e3p_A Protein kinase, putativ 100.0 4.7E-37 1.6E-41 346.0 24.8 284 619-914 17-325 (360)
232 3q60_A ROP5B; pseudokinase, tr 100.0 2.6E-38 9E-43 357.4 14.6 260 625-908 62-357 (371)
233 1phk_A Phosphorylase kinase; g 100.0 2.7E-37 9.3E-42 338.2 21.8 260 623-909 15-289 (298)
234 1blx_A Cyclin-dependent kinase 100.0 1.2E-37 4.1E-42 345.7 19.2 274 623-909 9-302 (326)
235 3nsz_A CK II alpha, casein kin 100.0 3E-37 1E-41 343.1 21.8 261 625-908 36-324 (330)
236 2x7f_A TRAF2 and NCK-interacti 100.0 3.3E-37 1.1E-41 342.1 21.3 258 622-908 21-291 (326)
237 2vx3_A Dual specificity tyrosi 100.0 1.6E-36 5.6E-41 344.0 27.1 270 624-909 53-378 (382)
238 2pml_X PFPK7, Ser/Thr protein 100.0 7.2E-38 2.5E-42 350.9 14.2 271 624-908 30-327 (348)
239 1zy4_A Serine/threonine-protei 100.0 1.1E-36 3.8E-41 334.0 22.8 252 623-901 4-283 (303)
240 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-36 3.8E-41 380.6 25.7 391 58-454 15-564 (844)
241 2eu9_A Dual specificity protei 100.0 2E-36 7E-41 340.0 25.2 267 624-909 18-339 (355)
242 3aln_A Dual specificity mitoge 100.0 2.3E-37 7.8E-42 343.6 17.1 260 625-909 22-291 (327)
243 2rio_A Serine/threonine-protei 100.0 6.3E-37 2.2E-41 352.7 20.5 253 625-901 15-295 (434)
244 1q8y_A SR protein kinase; tran 100.0 5.7E-37 2E-41 347.1 19.5 269 625-909 19-339 (373)
245 2dyl_A Dual specificity mitoge 100.0 6E-37 2E-41 338.8 18.9 260 624-910 24-290 (318)
246 3v47_A TOLL-like receptor 5B a 100.0 6.8E-37 2.3E-41 356.3 20.2 356 60-454 13-412 (455)
247 3fhr_A MAP kinase-activated pr 100.0 1.9E-36 6.5E-41 337.0 19.8 259 623-909 26-293 (336)
248 3a99_A Proto-oncogene serine/t 100.0 3.7E-37 1.3E-41 340.5 13.4 252 619-908 37-298 (320)
249 3p23_A Serine/threonine-protei 100.0 3.4E-36 1.2E-40 345.4 20.5 248 625-901 24-283 (432)
250 2iwi_A Serine/threonine-protei 100.0 8.8E-37 3E-41 336.5 13.7 250 621-908 27-288 (312)
251 2id5_A Lingo-1, leucine rich r 100.0 2.2E-35 7.6E-40 345.5 23.1 316 50-453 3-336 (477)
252 3qa8_A MGC80376 protein; kinas 100.0 3.6E-36 1.2E-40 354.9 16.1 272 624-908 13-309 (676)
253 3vq2_A TLR4, TOLL-like recepto 100.0 9E-35 3.1E-39 351.2 25.3 389 51-454 4-562 (606)
254 2pzi_A Probable serine/threoni 100.0 2E-35 6.8E-40 359.9 18.6 241 625-908 80-328 (681)
255 3uqc_A Probable conserved tran 100.0 5.4E-35 1.9E-39 317.0 18.9 233 625-909 31-266 (286)
256 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-35 1.7E-39 349.2 18.1 369 59-454 6-514 (549)
257 3dzo_A Rhoptry kinase domain; 100.0 5.3E-35 1.8E-39 334.4 15.7 245 625-901 78-363 (413)
258 3m2w_A MAP kinase-activated pr 100.0 5.1E-34 1.7E-38 312.2 21.7 236 624-909 16-262 (299)
259 3t6q_A CD180 antigen; protein- 100.0 4E-34 1.4E-38 345.5 22.8 381 67-453 57-563 (606)
260 3t6q_A CD180 antigen; protein- 100.0 6E-34 2.1E-38 344.0 23.9 379 59-450 14-462 (606)
261 3rgz_A Protein brassinosteroid 100.0 1.3E-33 4.4E-38 349.2 23.1 324 68-432 369-743 (768)
262 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-33 1.2E-37 339.5 26.1 390 60-454 34-584 (635)
263 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-33 8E-38 335.1 23.5 342 67-453 52-513 (562)
264 2z63_A TOLL-like receptor 4, v 100.0 2.1E-33 7.3E-38 336.7 23.1 378 67-454 28-535 (570)
265 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-33 2.7E-37 338.9 26.1 387 58-448 5-465 (680)
266 2vuw_A Serine/threonine-protei 100.0 1.2E-34 4.2E-39 322.7 8.9 246 624-901 19-331 (336)
267 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-33 9.8E-38 331.5 19.5 363 67-453 21-484 (520)
268 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-32 1.2E-36 333.2 27.5 385 67-454 222-626 (680)
269 3v47_A TOLL-like receptor 5B a 100.0 5.6E-33 1.9E-37 323.2 19.5 310 66-438 53-416 (455)
270 3oja_B Anopheles plasmodium-re 100.0 2E-32 6.8E-37 328.9 23.0 331 43-454 9-362 (597)
271 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-32 4.9E-37 332.0 20.0 353 67-434 56-562 (606)
272 4eco_A Uncharacterized protein 100.0 5.1E-33 1.7E-37 335.9 16.0 340 66-432 205-602 (636)
273 2id5_A Lingo-1, leucine rich r 100.0 2.6E-32 8.9E-37 319.5 20.3 301 67-455 56-361 (477)
274 3o6n_A APL1; leucine-rich repe 100.0 5.2E-32 1.8E-36 308.1 22.2 309 67-455 45-357 (390)
275 4ecn_A Leucine-rich repeat pro 100.0 6.4E-32 2.2E-36 331.4 19.3 344 83-451 440-841 (876)
276 1xku_A Decorin; proteoglycan, 100.0 5.7E-31 1.9E-35 292.3 24.3 281 69-447 33-329 (330)
277 4fcg_A Uncharacterized protein 100.0 7.4E-32 2.5E-36 298.3 16.5 276 22-430 23-314 (328)
278 2z7x_B TOLL-like receptor 1, v 100.0 1E-31 3.4E-36 318.2 16.8 321 64-434 42-485 (520)
279 2ft3_A Biglycan; proteoglycan, 100.0 6.6E-31 2.2E-35 292.0 21.7 281 69-448 35-331 (332)
280 2z63_A TOLL-like receptor 4, v 100.0 2.6E-31 8.9E-36 318.6 19.6 355 67-436 52-537 (570)
281 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-31 9.7E-36 316.7 17.7 345 66-435 49-515 (549)
282 3oja_B Anopheles plasmodium-re 100.0 7.1E-31 2.4E-35 315.4 20.5 305 67-454 75-384 (597)
283 3o6n_A APL1; leucine-rich repe 100.0 2.9E-30 9.8E-35 293.8 22.2 304 67-453 69-377 (390)
284 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.5E-34 280.6 27.5 290 43-428 18-330 (330)
285 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.8E-30 9.6E-35 308.5 22.3 357 70-449 34-462 (562)
286 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-30 9.9E-35 322.5 22.4 338 71-450 8-375 (844)
287 2z80_A TOLL-like receptor 2, v 100.0 1.7E-30 5.9E-35 291.2 16.3 284 51-436 27-320 (353)
288 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-29 4.4E-34 281.6 22.3 282 50-428 27-331 (332)
289 4fmz_A Internalin; leucine ric 100.0 2.5E-29 8.6E-34 281.2 24.7 299 67-449 44-345 (347)
290 1o6v_A Internalin A; bacterial 100.0 3.7E-29 1.3E-33 291.4 25.2 318 68-451 69-389 (466)
291 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-29 1.6E-33 288.3 25.7 318 66-449 41-367 (457)
292 2z66_A Variable lymphocyte rec 100.0 3.4E-30 1.2E-34 282.8 15.1 278 51-454 2-291 (306)
293 1o6v_A Internalin A; bacterial 100.0 1.1E-28 3.9E-33 287.3 22.9 305 66-436 89-394 (466)
294 4fmz_A Internalin; leucine ric 100.0 2E-28 6.8E-33 273.9 23.5 282 65-430 64-346 (347)
295 4g8a_A TOLL-like receptor 4; l 100.0 1E-28 3.5E-33 300.0 19.7 354 67-433 76-583 (635)
296 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-29 2E-33 273.4 15.3 224 67-428 76-302 (313)
297 3zyj_A Leucine-rich repeat-con 100.0 3E-28 1E-32 281.5 22.0 245 72-431 48-293 (440)
298 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-28 1.5E-32 280.0 23.4 316 76-450 27-352 (457)
299 1jl5_A Outer protein YOPM; leu 100.0 2.2E-28 7.4E-33 282.4 20.6 325 67-450 11-370 (454)
300 3zyi_A Leucine-rich repeat-con 100.0 3.8E-28 1.3E-32 281.7 22.0 244 74-432 61-305 (452)
301 3oja_A Leucine-rich immune mol 100.0 2.3E-30 7.9E-35 301.9 0.3 217 112-430 32-250 (487)
302 4azs_A Methyltransferase WBDD; 100.0 2.8E-29 9.6E-34 296.7 9.2 187 632-831 241-437 (569)
303 1jl5_A Outer protein YOPM; leu 100.0 2E-27 6.9E-32 274.3 23.9 320 67-450 91-429 (454)
304 4fcg_A Uncharacterized protein 100.0 9.5E-28 3.2E-32 265.3 19.5 228 114-448 81-312 (328)
305 1ozn_A Reticulon 4 receptor; N 100.0 1E-27 3.6E-32 260.1 18.1 206 63-300 7-215 (285)
306 1wwl_A Monocyte differentiatio 99.9 1E-28 3.6E-33 271.5 6.6 251 62-431 38-310 (312)
307 2z80_A TOLL-like receptor 2, v 99.9 1.6E-27 5.3E-32 267.2 14.6 274 91-453 31-317 (353)
308 3zyi_A Leucine-rich repeat-con 99.9 1.6E-26 5.3E-31 268.1 23.1 247 93-454 56-307 (452)
309 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-27 1.5E-31 279.6 18.7 282 44-435 13-302 (622)
310 2z66_A Variable lymphocyte rec 99.9 8.5E-27 2.9E-31 255.7 19.7 249 94-453 10-264 (306)
311 3zyj_A Leucine-rich repeat-con 99.9 1.6E-26 5.5E-31 267.0 22.8 247 93-454 45-296 (440)
312 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-26 4.7E-31 251.2 17.2 176 94-300 14-191 (285)
313 3o53_A Protein LRIM1, AGAP0063 99.9 4.3E-28 1.5E-32 267.2 4.0 217 112-430 32-250 (317)
314 2o6q_A Variable lymphocyte rec 99.9 1.8E-25 6.2E-30 240.2 19.5 216 51-301 2-220 (270)
315 1wwl_A Monocyte differentiatio 99.9 4.1E-27 1.4E-31 258.7 6.3 249 112-450 41-309 (312)
316 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-26 1.1E-30 252.3 11.0 273 62-435 5-281 (317)
317 3oja_A Leucine-rich immune mol 99.9 2E-26 7E-31 268.6 9.4 237 88-425 31-270 (487)
318 3en9_A Glycoprotease, O-sialog 99.9 2.8E-26 9.6E-31 269.5 8.4 187 628-833 339-539 (540)
319 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.2E-29 234.7 18.4 221 73-408 13-239 (276)
320 2z62_A TOLL-like receptor 4, v 99.9 2.7E-24 9.3E-29 231.9 19.5 231 95-437 11-244 (276)
321 1z7x_W Ribonuclease inhibitor; 99.9 3.5E-27 1.2E-31 274.8 -6.3 229 67-299 28-297 (461)
322 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-23 1.3E-27 245.7 26.6 257 90-451 39-298 (622)
323 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8.1E-29 231.7 12.9 223 90-435 18-240 (272)
324 1z7x_W Ribonuclease inhibitor; 99.9 2.5E-26 8.5E-31 267.6 -2.9 328 67-450 56-440 (461)
325 3rfs_A Internalin B, repeat mo 99.9 7.3E-24 2.5E-28 227.8 15.0 181 86-298 36-217 (272)
326 3m19_A Variable lymphocyte rec 99.9 6.9E-24 2.4E-28 225.2 14.4 192 52-279 3-195 (251)
327 1p9a_G Platelet glycoprotein I 99.9 1.2E-22 4.2E-27 220.0 20.4 178 167-432 32-210 (290)
328 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.3E-28 230.7 12.6 58 369-431 251-308 (310)
329 2o6q_A Variable lymphocyte rec 99.9 2.9E-22 1E-26 215.1 21.7 207 115-435 17-223 (270)
330 2xwt_C Thyrotropin receptor; s 99.9 2.3E-23 7.7E-28 219.5 12.3 213 50-296 4-236 (239)
331 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.3E-27 219.9 18.0 158 87-278 6-163 (290)
332 3goz_A Leucine-rich repeat-con 99.9 1.7E-24 5.9E-29 243.1 2.3 63 370-432 226-299 (362)
333 2ast_B S-phase kinase-associat 99.9 2.1E-24 7.2E-29 240.1 1.1 207 58-296 38-257 (336)
334 2ca6_A RAN GTPase-activating p 99.9 2.2E-24 7.6E-29 244.7 0.2 201 163-434 91-320 (386)
335 4glp_A Monocyte differentiatio 99.9 1.2E-22 3.9E-27 223.0 12.5 205 68-300 92-308 (310)
336 1zar_A RIO2 kinase; serine kin 99.9 1.3E-22 4.3E-27 218.4 10.8 151 621-805 86-252 (282)
337 2o6s_A Variable lymphocyte rec 99.9 3.5E-22 1.2E-26 205.5 12.4 186 51-286 2-188 (208)
338 2xwt_C Thyrotropin receptor; s 99.9 6.8E-22 2.3E-26 208.2 14.5 84 92-179 32-118 (239)
339 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.7E-26 213.9 17.4 35 370-406 196-230 (308)
340 3m19_A Variable lymphocyte rec 99.9 3.8E-21 1.3E-25 204.0 18.9 181 91-302 14-195 (251)
341 2ca6_A RAN GTPase-activating p 99.9 9.6E-24 3.3E-28 239.4 -1.6 270 82-426 23-339 (386)
342 1h6u_A Internalin H; cell adhe 99.9 3.6E-21 1.2E-25 210.6 16.7 190 67-300 41-231 (308)
343 3goz_A Leucine-rich repeat-con 99.9 7.6E-23 2.6E-27 229.7 3.4 253 96-451 3-298 (362)
344 4ay9_X Follicle-stimulating ho 99.9 2.2E-21 7.7E-26 216.5 15.2 193 74-299 16-215 (350)
345 4ay9_X Follicle-stimulating ho 99.9 2.4E-21 8.1E-26 216.3 15.0 178 95-303 13-194 (350)
346 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.5E-27 225.5 4.6 251 92-436 48-312 (336)
347 3cvr_A Invasion plasmid antige 99.9 8.4E-22 2.9E-26 231.2 11.3 205 43-304 33-248 (571)
348 3cvr_A Invasion plasmid antige 99.9 2.6E-21 9E-26 227.0 15.3 48 370-418 208-255 (571)
349 4b8c_D Glucose-repressible alc 99.8 2.8E-22 9.4E-27 244.3 5.8 226 23-304 129-359 (727)
350 2o6s_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 190.5 14.2 176 94-306 10-185 (208)
351 3e6j_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 187.4 14.8 160 50-255 15-175 (229)
352 2v9t_B SLIT homolog 2 protein 99.8 4.2E-19 1.4E-23 183.9 13.3 149 72-253 16-166 (220)
353 3ogk_B Coronatine-insensitive 99.8 6.3E-21 2.1E-25 229.4 -0.9 333 67-432 164-528 (592)
354 1m9s_A Internalin B; cell inva 99.8 7.7E-19 2.6E-23 208.5 17.0 184 73-300 27-211 (605)
355 1h6t_A Internalin B; cell adhe 99.8 8E-19 2.7E-23 190.2 15.3 170 88-299 43-213 (291)
356 2v70_A SLIT-2, SLIT homolog 2 99.8 7.2E-19 2.5E-23 182.1 14.2 126 71-203 15-142 (220)
357 1h6t_A Internalin B; cell adhe 99.8 7.8E-19 2.7E-23 190.3 14.4 172 67-280 46-217 (291)
358 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-18 3.4E-23 181.0 14.6 154 50-208 5-171 (220)
359 2xot_A Amphoterin-induced prot 99.8 4.8E-19 1.6E-23 198.5 13.0 177 71-276 22-202 (361)
360 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 180.4 14.8 153 94-277 14-166 (220)
361 3ogk_B Coronatine-insensitive 99.8 2.9E-21 9.9E-26 232.3 -7.5 348 68-451 139-527 (592)
362 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.9E-23 195.4 13.5 174 94-299 21-202 (361)
363 1m9s_A Internalin B; cell inva 99.8 2E-18 6.9E-23 204.9 14.8 177 67-285 43-219 (605)
364 3e6j_A Variable lymphocyte rec 99.8 8.3E-18 2.9E-22 175.3 17.1 155 94-280 22-176 (229)
365 4ezg_A Putative uncharacterize 99.7 5.2E-18 1.8E-22 172.5 13.1 154 87-276 40-194 (197)
366 1zth_A RIO1 serine protein kin 99.7 2.1E-18 7E-23 183.3 9.8 139 627-781 49-219 (258)
367 1xeu_A Internalin C; cellular 99.7 7.3E-18 2.5E-22 179.6 12.3 167 69-278 21-187 (263)
368 2p1m_B Transport inhibitor res 99.7 1.8E-20 6.1E-25 225.5 -10.4 349 66-449 104-518 (594)
369 1xeu_A Internalin C; cellular 99.7 5.2E-18 1.8E-22 180.7 9.6 170 89-301 17-187 (263)
370 1dce_A Protein (RAB geranylger 99.7 3.5E-19 1.2E-23 210.2 -0.2 203 135-424 346-567 (567)
371 1dce_A Protein (RAB geranylger 99.7 8E-20 2.7E-24 215.7 -7.0 203 88-400 346-567 (567)
372 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.2E-22 167.2 12.6 155 109-300 39-195 (197)
373 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.9E-22 166.8 10.7 133 70-209 11-145 (192)
374 2p1m_B Transport inhibitor res 99.7 2.5E-19 8.5E-24 215.5 -4.8 327 67-430 130-519 (594)
375 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4E-21 161.7 11.4 132 117-280 11-143 (192)
376 4b8c_D Glucose-repressible alc 99.7 8.1E-17 2.8E-21 196.2 10.9 194 69-300 203-405 (727)
377 2o6r_A Variable lymphocyte rec 99.7 2.5E-16 8.4E-21 157.1 11.7 138 52-207 3-141 (177)
378 2ell_A Acidic leucine-rich nuc 99.6 2.4E-16 8.2E-21 155.7 9.1 137 67-208 24-164 (168)
379 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.7E-20 154.5 12.3 130 71-207 14-143 (193)
380 4gyi_A RIO2 kinase; protein ki 99.6 6.7E-16 2.3E-20 169.6 10.6 139 626-780 96-264 (397)
381 2ell_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 149.4 11.8 108 90-203 23-133 (168)
382 2wfh_A SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 150.9 13.9 129 117-278 13-141 (193)
383 3sb4_A Hypothetical leucine ri 99.6 5.1E-16 1.7E-20 171.5 7.3 102 262-424 225-328 (329)
384 2je0_A Acidic leucine-rich nuc 99.6 6.6E-16 2.2E-20 149.2 6.7 129 67-199 17-149 (149)
385 2o6r_A Variable lymphocyte rec 99.6 9.3E-15 3.2E-19 145.6 13.4 132 117-280 10-141 (177)
386 2je0_A Acidic leucine-rich nuc 99.6 5.1E-15 1.7E-19 142.9 10.4 132 89-248 15-149 (149)
387 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.4E-21 161.1 -4.7 107 88-203 15-128 (198)
388 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-15 2.9E-19 145.7 7.4 128 67-203 19-153 (176)
389 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.6E-19 143.6 9.1 137 85-252 13-153 (176)
390 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.3E-21 161.1 -5.7 161 67-252 18-185 (198)
391 4fdw_A Leucine rich hypothetic 99.5 5.9E-13 2E-17 150.1 18.3 242 91-432 113-360 (401)
392 3sb4_A Hypothetical leucine ri 99.5 9.6E-14 3.3E-18 153.2 10.1 259 67-400 49-328 (329)
393 3g39_A Variable lymphocyte rec 99.4 2.8E-13 9.6E-18 133.7 11.5 89 115-207 31-119 (170)
394 3g39_A Variable lymphocyte rec 99.4 5.4E-13 1.9E-17 131.6 11.1 106 70-182 12-118 (170)
395 2r9u_A Variable lymphocyte rec 99.4 7.3E-13 2.5E-17 131.1 11.5 104 70-204 15-119 (174)
396 2r9u_A Variable lymphocyte rec 99.4 8.3E-13 2.8E-17 130.7 11.0 101 51-152 7-119 (174)
397 4fdw_A Leucine rich hypothetic 99.4 4.7E-12 1.6E-16 142.7 17.2 261 69-430 115-383 (401)
398 3un9_A NLR family member X1; l 99.3 4.3E-14 1.5E-18 157.8 -7.7 189 90-299 71-283 (372)
399 2ifg_A High affinity nerve gro 99.2 7.4E-12 2.5E-16 139.2 8.7 108 58-205 9-118 (347)
400 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.2E-16 136.0 10.1 88 118-211 12-101 (347)
401 3tm0_A Aminoglycoside 3'-phosp 99.2 3E-11 1E-15 128.5 11.2 147 620-779 9-212 (263)
402 3un9_A NLR family member X1; l 99.2 6E-13 2.1E-17 148.6 -2.3 164 113-300 71-253 (372)
403 1nd4_A Aminoglycoside 3'-phosp 99.1 6.3E-11 2.2E-15 125.8 7.9 136 626-779 21-213 (264)
404 4fs7_A Uncharacterized protein 99.1 6.9E-10 2.4E-14 125.4 15.7 294 83-427 63-376 (394)
405 4fs7_A Uncharacterized protein 98.9 8.3E-09 2.9E-13 116.5 16.8 292 102-447 58-376 (394)
406 3dxp_A Putative acyl-COA dehyd 98.9 2.5E-09 8.6E-14 119.2 11.7 143 629-780 42-248 (359)
407 2ra8_A Uncharacterized protein 98.9 2.4E-10 8.1E-15 126.4 3.1 202 67-297 107-341 (362)
408 3sg8_A APH(2'')-ID; antibiotic 98.9 1.4E-09 4.7E-14 118.3 6.5 186 630-832 25-287 (304)
409 4gt6_A Cell surface protein; l 98.8 1.1E-07 3.9E-12 107.2 19.0 124 68-200 65-192 (394)
410 4gt6_A Cell surface protein; l 98.8 1.7E-07 5.6E-12 105.8 19.2 299 79-429 51-369 (394)
411 3rw6_A Nuclear RNA export fact 98.8 1.4E-10 4.6E-15 121.5 -6.3 144 59-208 80-238 (267)
412 2ra8_A Uncharacterized protein 98.7 4.4E-09 1.5E-13 116.2 1.5 183 67-274 139-341 (362)
413 4h09_A Hypothetical leucine ri 98.6 8E-07 2.7E-11 99.6 16.9 285 68-427 47-343 (379)
414 3r70_A Aminoglycoside phosphot 98.5 4.3E-07 1.5E-11 99.1 12.9 137 626-781 38-238 (320)
415 1io0_A Tropomodulin; LRR prote 98.5 1.1E-08 3.7E-13 102.0 -0.0 70 134-203 32-106 (185)
416 1io0_A Tropomodulin; LRR prote 98.5 1.4E-08 4.8E-13 101.2 -0.2 71 135-205 62-138 (185)
417 3d1u_A Putative fructosamine-3 98.5 3.7E-07 1.3E-11 97.7 10.2 146 626-779 16-215 (288)
418 4gkh_A Aminoglycoside 3'-phosp 98.3 4E-06 1.4E-10 89.0 13.9 134 632-779 31-222 (272)
419 3rw6_A Nuclear RNA export fact 98.3 8.2E-08 2.8E-12 100.4 -0.4 104 87-196 137-257 (267)
420 3tdw_A Gentamicin resistance p 98.3 5.5E-06 1.9E-10 89.6 13.7 136 630-780 24-224 (306)
421 3ovc_A Hygromycin-B 4-O-kinase 98.2 5E-06 1.7E-10 92.1 12.8 147 626-780 42-243 (362)
422 4h09_A Hypothetical leucine ri 98.1 9.2E-05 3.1E-09 82.7 19.0 267 85-427 40-320 (379)
423 2q83_A YTAA protein; 2635576, 97.9 9.9E-05 3.4E-09 81.1 14.8 142 631-779 38-251 (346)
424 3ats_A Putative uncharacterize 97.9 1.1E-05 3.8E-10 89.4 6.2 82 630-711 25-121 (357)
425 2olc_A MTR kinase, methylthior 97.8 5.6E-05 1.9E-09 85.0 11.1 77 630-708 35-120 (397)
426 2pyw_A Uncharacterized protein 97.7 5.7E-05 1.9E-09 85.6 8.9 77 749-828 231-312 (420)
427 1pgv_A TMD-1, tropomodulin TMD 97.6 1.1E-05 3.6E-10 79.7 0.7 69 136-204 39-112 (197)
428 1pgv_A TMD-1, tropomodulin TMD 97.6 1.5E-05 5.3E-10 78.6 1.1 68 134-201 66-137 (197)
429 3jr1_A Putative fructosamine-3 97.5 0.0013 4.4E-08 70.7 15.0 141 629-776 40-232 (312)
430 3e4g_A ATP synthase subunit S, 97.4 7.7E-05 2.6E-09 72.1 3.9 85 115-203 62-153 (176)
431 3f7w_A Putative fructosamine-3 97.4 0.00038 1.3E-08 74.3 9.0 80 625-710 15-97 (288)
432 3e4g_A ATP synthase subunit S, 97.3 0.0001 3.5E-09 71.2 3.4 84 166-274 61-150 (176)
433 2ppq_A HSK, HK, homoserine kin 97.3 0.0012 4E-08 71.7 11.8 160 615-779 7-216 (322)
434 3csv_A Aminoglycoside phosphot 97.2 0.0012 4.2E-08 71.9 10.9 144 631-781 24-218 (333)
435 1zyl_A Hypothetical protein YI 97.1 0.0065 2.2E-07 65.9 15.6 159 616-780 12-223 (328)
436 3dxq_A Choline/ethanolamine ki 97.0 0.0012 4.3E-08 70.7 8.4 71 630-710 23-95 (301)
437 3rfe_A Platelet glycoprotein I 97.0 0.00092 3.1E-08 61.5 6.1 37 115-151 32-68 (130)
438 3feg_A Choline/ethanolamine ki 96.6 0.0059 2E-07 67.3 10.1 142 631-779 56-253 (379)
439 3rfe_A Platelet glycoprotein I 96.5 0.0028 9.5E-08 58.3 5.9 38 167-204 32-69 (130)
440 1nw1_A Choline kinase (49.2 KD 96.4 0.014 4.9E-07 65.7 11.8 73 630-710 78-159 (429)
441 3c5i_A Choline kinase; choline 96.3 0.0042 1.4E-07 68.7 7.0 73 631-710 39-121 (369)
442 2qg7_A Ethanolamine kinase PV0 96.3 0.014 4.8E-07 66.1 10.8 74 630-710 113-188 (458)
443 3i1a_A Spectinomycin phosphotr 96.0 0.057 1.9E-06 58.7 13.9 67 635-710 33-108 (339)
444 3f2s_A CK, chetk-alpha, cholin 95.6 0.027 9.4E-07 62.2 9.3 145 631-779 58-279 (401)
445 2yle_A Protein spire homolog 1 95.5 0.15 5E-06 50.5 12.6 104 707-831 32-135 (229)
446 3mes_A Choline kinase; malaria 94.0 0.13 4.3E-06 57.5 9.2 74 630-710 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 87.8 1.6 5.5E-05 48.3 9.9 28 752-779 246-279 (401)
448 3cxl_A N-chimerin; SH2, RHO-GA 86.3 0.1 3.5E-06 59.2 -1.1 63 629-694 146-215 (463)
449 4ano_A ESSB; membrane protein, 78.9 5 0.00017 39.7 7.9 115 681-833 48-163 (219)
450 4ann_A ESSB; membrane protein, 78.9 3.4 0.00012 40.7 6.7 116 681-833 43-158 (215)
451 2k9y_A Ephrin type-A receptor 75.3 1.2 4.2E-05 31.0 1.7 11 539-549 29-39 (41)
452 2k1k_A Ephrin type-A receptor 74.9 1.2 4.1E-05 30.4 1.4 13 522-534 9-21 (38)
453 2klu_A T-cell surface glycopro 61.3 4.6 0.00016 30.7 2.3 18 525-542 12-29 (70)
454 2ks1_B Epidermal growth factor 53.2 8.5 0.00029 27.1 2.4 13 537-549 29-41 (44)
455 2lz0_A Uncharacterized protein 51.1 19 0.00065 30.6 5.0 36 110-146 16-51 (100)
456 2lz0_A Uncharacterized protein 50.6 31 0.0011 29.2 6.2 50 123-177 5-54 (100)
457 1cja_A Protein (actin-fragmin 45.4 89 0.003 32.8 9.8 135 631-780 75-237 (342)
458 2l2t_A Receptor tyrosine-prote 39.8 19 0.00065 25.3 2.5 14 537-550 28-41 (44)
459 3ls8_A Phosphatidylinositol 3- 36.3 2.1E+02 0.0073 32.8 12.0 85 687-779 403-501 (614)
460 2l34_A TYRO protein tyrosine k 28.4 28 0.00095 22.8 1.7 24 524-547 7-30 (33)
461 2l8s_A Integrin alpha-1; trans 24.8 25 0.00086 25.8 1.1 7 524-530 11-17 (54)
462 2klu_A T-cell surface glycopro 20.9 64 0.0022 24.6 2.6 16 532-547 16-31 (70)
No 1
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=3e-53 Score=458.91 Aligned_cols=262 Identities=31% Similarity=0.465 Sum_probs=214.4
Q ss_pred cCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
++|...+.||+|+||+||+|++. ++..||||+++.. .....++|.+|+++|++++|||||+++|+|.+++..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC--ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence 57788899999999999999864 4778999999754 566678899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhh--------ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCE
Q 041143 699 LLVYEYMPHGALSRHLFRWEK--------LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRA 770 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~--------~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~ 770 (973)
+||||||++|+|.++|+.... .....++|.++++|+.|||+||+||| +++||||||||+|||+++++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCE
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcE
Confidence 999999999999999986431 22357999999999999999999999 7899999999999999999999
Q ss_pred EEeeccccccCCCCCcc-eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHH
Q 041143 771 KVSDFGLVKLAPDGEKS-VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 771 kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 848 (973)
||+|||+|+........ ......||+.|||||++.+..|+.|+|||||||++|||+| |+.||......+. . .
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~---~---~ 241 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV---I---E 241 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH---H---H
T ss_pred EECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHH---H---H
Confidence 99999999865433222 2234579999999999999999999999999999999999 8999987654321 1 1
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+.... .+.. +......+.+|+.+||+.||++||||+||++.|+.+.+.
T Consensus 242 ~i~~~~-------~~~~-----p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 242 CITQGR-------VLQR-----PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHHTC-------CCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHcCC-------CCCC-----CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 111110 0111 111234578999999999999999999999999988653
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=7.4e-53 Score=462.27 Aligned_cols=261 Identities=31% Similarity=0.487 Sum_probs=208.6
Q ss_pred cCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
++|...++||+|+||+||+|++. +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence 46777889999999999999864 4788999999754 566678899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhh----------ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC
Q 041143 699 LLVYEYMPHGALSRHLFRWEK----------LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY 768 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~----------~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~ 768 (973)
+||||||++|+|.++++.... ....+++|.+++.|+.|||+||+||| +++||||||||+|||+++++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTT
T ss_pred EEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCC
Confidence 999999999999999976432 12346999999999999999999999 78999999999999999999
Q ss_pred CEEEeeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHH
Q 041143 769 RAKVSDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEW 846 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 846 (973)
.+||+|||+|+...... ....+...||+.|||||++.+..|+.++|||||||++|||+| |+.||......+. ..
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~---~~- 271 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEA---ID- 271 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHH---HH-
T ss_pred cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHH---HH-
Confidence 99999999998654332 223345789999999999999999999999999999999999 8999987654322 11
Q ss_pred HHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 847 FWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.+... ..+... ......+.+|+.+||+.||++||||+||++.|+.+.+
T Consensus 272 --~i~~g-------~~~~~p-----~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 272 --CITQG-------RELERP-----RACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp --HHHHT-------CCCCCC-----TTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred --HHHcC-------CCCCCc-----ccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhh
Confidence 11111 111111 1123457899999999999999999999999999876
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-52 Score=452.41 Aligned_cols=261 Identities=28% Similarity=0.484 Sum_probs=207.6
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
+++...+.||+|+||+||+|++++ .||||+++.........+.|.+|++++++++|||||+++|+|.+ +..+|||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 567778899999999999998763 69999998766667778899999999999999999999998865 568999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDG 784 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~ 784 (973)
|++|+|.++|+.. ...++|.+++.|+.|||+||+||| +++||||||||+|||+++++.+||+|||+|+.....
T Consensus 113 ~~gGsL~~~l~~~----~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 113 CEGSSLYKHLHVQ----ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CSSCBHHHHHHTS----CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred CCCCCHHHHHhhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence 9999999999752 256999999999999999999999 789999999999999999999999999999865432
Q ss_pred C-cceecccccccCccccccccc---CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 785 E-KSVVTRLAGTFGYLAPEYAVM---GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 785 ~-~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
. .......+||+.|||||++.+ +.|+.|+|||||||++|||+||+.||......... . .... ...
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~--~----~~~~-----~~~ 254 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI--I----FMVG-----RGY 254 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH--H----HHHH-----TTC
T ss_pred CcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHH--H----HHHh-----cCC
Confidence 2 233455789999999999864 45899999999999999999999999876543211 1 1110 111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..|.+. .........+.+|+.+||+.||++||||+||++.|+.+..
T Consensus 255 ~~p~~~--~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 255 ASPDLS--KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CCCCST--TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCCCcc--cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 222221 1111233457899999999999999999999999987754
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=6.1e-53 Score=458.49 Aligned_cols=260 Identities=26% Similarity=0.425 Sum_probs=210.6
Q ss_pred cCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
.++...+.||+|+||+||+|++. +++.||||+++... .....++|.+|+.++++++|||||+++|+|.+++..
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~ 104 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL 104 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECccc-ChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence 34556788999999999999863 46789999997542 334457899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhh-----------ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC
Q 041143 699 LLVYEYMPHGALSRHLFRWEK-----------LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD 767 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~ 767 (973)
+||||||++|+|.++|+.... .....++|.++++|+.|||+||+||| +++||||||||+|||++++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGG
T ss_pred EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCC
Confidence 999999999999999976321 11246999999999999999999999 7899999999999999999
Q ss_pred CCEEEeeccccccCCCC-CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHH
Q 041143 768 YRAKVSDFGLVKLAPDG-EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAE 845 (973)
Q Consensus 768 ~~~kl~DfGla~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 845 (973)
+++||+|||+|+..... .....+...||++|||||++.++.|+.++|||||||++|||+| |+.||.+....+ +..
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~---~~~ 258 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQD---VVE 258 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHH---HHH
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHH---HHH
Confidence 99999999999854332 2223445689999999999999999999999999999999998 899998765432 111
Q ss_pred HHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 846 WFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
.+... ..+. .+......+.+|+.+||+.||++||||+||++.|+.+
T Consensus 259 ---~i~~~---------~~~~---~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 259 ---MIRNR---------QVLP---CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp ---HHHTT---------CCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred ---HHHcC---------CCCC---CcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 11110 0011 1112234578999999999999999999999999764
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.2e-51 Score=451.99 Aligned_cols=257 Identities=22% Similarity=0.361 Sum_probs=208.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|+..+.||+|+||+||+|+.. +|+.||||+++.........+.+.+|+++|++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999864 69999999998766666777889999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|++||+|.+++... ....+++.+++.|+.||+.||+||| +++||||||||+|||+++++.+||+|||+|+....
T Consensus 104 y~~gg~L~~~i~~~---~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ---KGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp CCTTCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred CCCCCcHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecC
Confidence 99999999999752 2345789999999999999999999 88999999999999999999999999999986543
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.. ...+..+||+.|||||++.+..|+.++|||||||++|||+||+.||......+. +..+... ...
T Consensus 178 ~~-~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~------~~~i~~~------~~~- 243 (350)
T 4b9d_A 178 TV-ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNL------VLKIISG------SFP- 243 (350)
T ss_dssp HH-HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHHHHHT------CCC-
T ss_pred Cc-ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH------HHHHHcC------CCC-
Confidence 21 223456899999999999999999999999999999999999999987653321 1222211 011
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.+. ......+.+|+.+||+.||++|||+.|+++ +++++
T Consensus 244 ~~~-----~~~s~~~~~li~~~L~~dP~~R~s~~e~l~--hp~~~ 281 (350)
T 4b9d_A 244 PVS-----LHYSYDLRSLVSQLFKRNPRDRPSVNSILE--KGFIA 281 (350)
T ss_dssp CCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHT--SHHHH
T ss_pred CCC-----ccCCHHHHHHHHHHccCChhHCcCHHHHhc--CHHhh
Confidence 111 111235779999999999999999999987 44443
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.4e-51 Score=447.71 Aligned_cols=256 Identities=24% Similarity=0.391 Sum_probs=212.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
+.|+..+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|+++|++++|||||++++++.+++..|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE 151 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 151 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG--CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCc--hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 56889999999999999999875 69999999996542 2233568899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
||++|+|.+++.. ..+++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+....
T Consensus 152 y~~gg~L~~~l~~------~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 152 FLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp CCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred CCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCC
Confidence 9999999998864 45899999999999999999999 88999999999999999999999999999986654
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+.. ..+ .....+
T Consensus 223 ~~-~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~------~~i-------~~~~~~ 288 (346)
T 4fih_A 223 EV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM------KMI-------RDNLPP 288 (346)
T ss_dssp SS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------HHH-------HHSSCC
T ss_pred CC-CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHH------HHH-------HcCCCC
Confidence 32 2345678999999999999999999999999999999999999999876543221 111 111222
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.+.. .......+.+|+.+||+.||++|||+.|+++ ++++++.
T Consensus 289 ~~~~---~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~--Hp~~~~~ 330 (346)
T 4fih_A 289 RLKN---LHKVSPSLKGFLDRLLVRDPAQRATAAELLK--HPFLAKA 330 (346)
T ss_dssp CCSC---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT--CGGGGGC
T ss_pred CCCc---cccCCHHHHHHHHHHcCCChhHCcCHHHHhc--CHhhcCC
Confidence 2221 1112245779999999999999999999998 7777653
No 7
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-50 Score=433.88 Aligned_cols=250 Identities=26% Similarity=0.419 Sum_probs=201.9
Q ss_pred cccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe----CCeEEEEE
Q 041143 628 AQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE----GNERLLVY 702 (973)
Q Consensus 628 ~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lV~ 702 (973)
...++||+|+||+||+|.+. +++.||||++..........+.|.+|++++++++|||||++++++.+ ++..||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 45567999999999999875 58899999997665566677889999999999999999999999875 24579999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEECC-CCCEEEeeccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLDD-DYRAKVSDFGLVK 779 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~~-~~~~kl~DfGla~ 779 (973)
|||++|+|.+++.+ ...+++..+..++.||+.||+||| +++ ||||||||+|||++. ++.+||+|||+|+
T Consensus 109 Ey~~gg~L~~~l~~-----~~~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~ 180 (290)
T 3fpq_A 109 ELMTSGTLKTYLKR-----FKVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp ECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred eCCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence 99999999999975 256899999999999999999999 556 999999999999984 7999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
..... .....+||+.|||||++. +.|+.++|||||||++|||+||+.||........ ....+...
T Consensus 181 ~~~~~---~~~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~-----~~~~i~~~------ 245 (290)
T 3fpq_A 181 LKRAS---FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-----IYRRVTSG------ 245 (290)
T ss_dssp GCCTT---SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-----HHHHHTTT------
T ss_pred eCCCC---ccCCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH-----HHHHHHcC------
Confidence 65432 234578999999999876 4699999999999999999999999976543211 11111111
Q ss_pred hcCc-cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 860 AIDP-ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 860 ~~~~-~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..+ .+. ......+.+|+.+||+.||++|||++|+++ +++++
T Consensus 246 -~~~~~~~-----~~~~~~~~~li~~~L~~dP~~R~s~~e~l~--Hp~~~ 287 (290)
T 3fpq_A 246 -VKPASFD-----KVAIPEVKEIIEGCIRQNKDERYSIKDLLN--HAFFQ 287 (290)
T ss_dssp -CCCGGGG-----GCCCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGC
T ss_pred -CCCCCCC-----ccCCHHHHHHHHHHccCChhHCcCHHHHhc--Ccccc
Confidence 111 111 011134779999999999999999999988 55554
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.8e-50 Score=440.67 Aligned_cols=255 Identities=23% Similarity=0.317 Sum_probs=207.6
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
+.|...++||+|+||.||+|+.. +|+.||||+++.... +.+|++++++++|||||++++++.+++..|||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence 46778889999999999999875 689999999976422 2469999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC-CEEEeeccccccCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY-RAKVSDFGLVKLAP 782 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~-~~kl~DfGla~~~~ 782 (973)
||+||+|.+++++. ..+++.++..++.||+.||+||| +++||||||||+|||++.++ ++||+|||+|+...
T Consensus 131 y~~gg~L~~~l~~~-----~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 131 LLEGGSLGQLIKQM-----GCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp CCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred ccCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEcc
Confidence 99999999999752 46899999999999999999999 88999999999999999987 69999999998654
Q ss_pred CCCcc----eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 783 DGEKS----VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 783 ~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
..... ....++||+.|||||++.+..|+.++|||||||++|||+||+.||......+.. ..+......+.
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~------~~i~~~~~~~~ 276 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLC------LKIASEPPPIR 276 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCH------HHHHHSCCGGG
T ss_pred CCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH------HHHHcCCCCch
Confidence 33211 123468999999999999999999999999999999999999999876543221 11111111111
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.+.+ .....+.+++.+||+.||++|||+.|+++.|..+.+..
T Consensus 277 -~~~~---------~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 277 -EIPP---------SCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp -GSCT---------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred -hcCc---------cCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 0111 12245779999999999999999999999998887754
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.3e-50 Score=441.54 Aligned_cols=269 Identities=23% Similarity=0.337 Sum_probs=204.6
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC----eEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN----ERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~l 700 (973)
++|...+.||+|+||+||+|++. |+.||||+++.. ......+.+|+..+.+++|||||+++|+|.+++ ..+|
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence 46778899999999999999985 899999998643 222233445666677899999999999998754 5799
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhh-----ccCCeeeccCCCCcEEECCCCCEEEeec
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCL-----ARQTFIHRDLKSSNILLDDDYRAKVSDF 775 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~-----~~~~ivH~Dikp~Nill~~~~~~kl~Df 775 (973)
|||||++|+|.++++. ..++|.++++++.|+|+||+|||+. +.++||||||||+|||++.++++||+||
T Consensus 79 V~Ey~~~gsL~~~l~~------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DF 152 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADL 152 (303)
T ss_dssp EEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred EecCCCCCcHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeC
Confidence 9999999999999975 4689999999999999999999943 1349999999999999999999999999
Q ss_pred cccccCCCCCcc---eecccccccCcccccccccC------cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHH-----
Q 041143 776 GLVKLAPDGEKS---VVTRLAGTFGYLAPEYAVMG------KITTKADVFSYGVVLMELLTGLAALDEERPEESR----- 841 (973)
Q Consensus 776 Gla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~----- 841 (973)
|+|+........ .....+||+.|||||++.+. .++.|+|||||||++|||+||+.|+.........
T Consensus 153 Gla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~ 232 (303)
T 3hmm_A 153 GLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232 (303)
T ss_dssp TTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred CCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcc
Confidence 999865443322 22346899999999998754 4778999999999999999998877543221100
Q ss_pred ----HHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 842 ----YLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 842 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....+... .....++|.+.......+....+.+|+.+||+.||++||||.||++.|+++.++
T Consensus 233 ~~~~~~~~~~~~------~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 233 PSDPSVEEMRKV------VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CSSCCHHHHHHH------HTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHH------HhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 00011000 111223333332223345667788999999999999999999999999998764
No 10
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=3.1e-50 Score=444.92 Aligned_cols=272 Identities=25% Similarity=0.382 Sum_probs=218.6
Q ss_pred HHHHHHHhcCccccCcccccCccEEEEEEECC------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCC-Cceeeee
Q 041143 617 VQVLRKVTQNFAQENELGRGGFGTVYKGELED------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRH-RHLVSLL 689 (973)
Q Consensus 617 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~ 689 (973)
....+...++|+..+.||+|+||+||+|++.. ++.||||+++.. ......+.|.+|+++|.+++| ||||+++
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~-~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc-cChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 33344556889999999999999999998642 357999999765 344556789999999999965 8999999
Q ss_pred eEEEeC-CeEEEEEEecCCCCHHHHHHhhhhc-----------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccC
Q 041143 690 GYSIEG-NERLLVYEYMPHGALSRHLFRWEKL-----------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDL 757 (973)
Q Consensus 690 ~~~~~~-~~~~lV~e~~~~g~L~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Di 757 (973)
|+|.+. +..++|||||++|+|.++|+..... ....++|.+++.|+.|||+||+||| +++||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCcc
Confidence 999775 5689999999999999999864321 1345899999999999999999999 889999999
Q ss_pred CCCcEEECCCCCEEEeeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCC
Q 041143 758 KSSNILLDDDYRAKVSDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEE 835 (973)
Q Consensus 758 kp~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~ 835 (973)
||+|||+++++.+||+|||+|+...... .......+||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999654433 333455789999999999999999999999999999999998 99999875
Q ss_pred ChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 836 RPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...+. +.. .+. +...+... . .....+.+++.+||+.||++|||++||++.|+.+++.
T Consensus 292 ~~~~~--~~~---~i~-------~g~~~~~p--~---~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 292 KIDEE--FCR---RLK-------EGTRMRAP--D---YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCSHH--HHH---HHH-------HTCCCCCC--T---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHHH--HHH---HHH-------cCCCCCCC--c---cCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 43221 111 111 11111111 1 1224577999999999999999999999999998874
No 11
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=5.6e-50 Score=448.83 Aligned_cols=256 Identities=24% Similarity=0.389 Sum_probs=213.3
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
+.|+..+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+++|++++|||||++++++.+++..|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT--CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc--hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence 57999999999999999999875 69999999997542 2234568899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
||++|+|.+++.. ..+++.++..|+.||+.||+||| +++||||||||+|||++.++.+||+|||+|+....
T Consensus 229 y~~gG~L~~~i~~------~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 229 FLEGGALTDIVTH------TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp CCTTEEHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred CCCCCcHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCC
Confidence 9999999998864 45899999999999999999999 88999999999999999999999999999986644
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.. ......+||+.|||||++.+..|+.++|||||||++|||++|+.||.+....+.. ..+ .....+
T Consensus 300 ~~-~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~------~~i-------~~~~~~ 365 (423)
T 4fie_A 300 EV-PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM------KMI-------RDNLPP 365 (423)
T ss_dssp SC-CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------HHH-------HHSCCC
T ss_pred CC-ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHH------HHH-------HcCCCC
Confidence 32 2345678999999999999999999999999999999999999999876543221 111 111222
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.+.... .....+.+|+.+||+.||++|||+.|+++ ++++++.
T Consensus 366 ~~~~~~---~~s~~~~dli~~~L~~dP~~R~ta~ell~--Hp~~~~~ 407 (423)
T 4fie_A 366 RLKNLH---KVSPSLKGFLDRLLVRDPAQRATAAELLK--HPFLAKA 407 (423)
T ss_dssp CCSCTT---SSCHHHHHHHHHHSCSSTTTSCCHHHHTT--CGGGGGC
T ss_pred CCcccc---cCCHHHHHHHHHHcCCChhHCcCHHHHhc--CHHhcCC
Confidence 222111 11235779999999999999999999998 7777653
No 12
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.4e-50 Score=436.14 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=207.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|+..+.||+|+||+||+|+.. +|+.||||++.... ......+.+.+|+++|++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999864 68999999996431 11223567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||++||+|.+++.+ ...+++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+...
T Consensus 112 Ey~~gG~L~~~i~~-----~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~ 183 (311)
T 4aw0_A 112 SYAKNGELLKYIRK-----IGSFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLS 183 (311)
T ss_dssp CCCTTEEHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecC
Confidence 99999999999965 246899999999999999999999 8899999999999999999999999999999664
Q ss_pred CC-CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DG-EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.. ........+||+.|||||++.+..|+.++||||+||++|||++|+.||......+. +..+....
T Consensus 184 ~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~------~~~i~~~~------- 250 (311)
T 4aw0_A 184 PESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLI------FAKIIKLE------- 250 (311)
T ss_dssp TTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTC-------
T ss_pred CCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHcCC-------
Confidence 33 23344567999999999999999999999999999999999999999987653221 12222111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
+.+.. .....+.+|+.+||+.||++|||++|+..
T Consensus 251 ---~~~p~---~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 251 ---YDFPE---KFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp ---CCCCT---TCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred ---CCCCc---ccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 11111 11234779999999999999999999754
No 13
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.1e-49 Score=423.45 Aligned_cols=252 Identities=26% Similarity=0.388 Sum_probs=194.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|+..+.||+|+||+||+|+.. +|+.||||++..... .....+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999864 699999999975432 2333567999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+ +|+|.+++.+ ...+++.++..++.||+.||+||| +++|+||||||+|||+++++++||+|||+|+...
T Consensus 93 Ey~-~g~L~~~l~~-----~~~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~ 163 (275)
T 3hyh_A 93 EYA-GNELFDYIVQ-----RDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT 163 (275)
T ss_dssp ECC-CEEHHHHHHH-----SCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC----
T ss_pred eCC-CCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecC
Confidence 999 7899999865 256899999999999999999999 8899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
+.. .....+||+.|||||++.+..| +.++||||+||++|||+||+.||....... .+..+......+
T Consensus 164 ~~~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~------~~~~i~~~~~~~---- 231 (275)
T 3hyh_A 164 DGN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV------LFKNISNGVYTL---- 231 (275)
T ss_dssp -------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHTCCCC----
T ss_pred CCC--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHcCCCCC----
Confidence 432 2345789999999999998876 579999999999999999999998754322 122222111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+.. ....+.+++.+||+.||++|||++|+++ +++++
T Consensus 232 p~~---------~s~~~~~li~~~L~~dP~~R~s~~eil~--hpw~k 267 (275)
T 3hyh_A 232 PKF---------LSPGAAGLIKRMLIVNPLNRISIHEIMQ--DDWFK 267 (275)
T ss_dssp CTT---------SCHHHHHHHHHHSCSSGGGSCCHHHHHH--CHHHH
T ss_pred CCC---------CCHHHHHHHHHHccCChhHCcCHHHHHc--Ccccc
Confidence 111 1234679999999999999999999998 67765
No 14
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=4.5e-50 Score=432.49 Aligned_cols=244 Identities=27% Similarity=0.331 Sum_probs=194.7
Q ss_pred cCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
++|+..+.||+|+||+||+|+.. .++.||||+++...........+.+|+++|++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999762 47899999996543222333468899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||++||+|.+++.+ ...+++.++..++.||+.||+||| +++||||||||+|||+++++.+||+|||+|+.
T Consensus 104 vmEy~~gg~L~~~l~~-----~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~ 175 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK-----EVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKE 175 (304)
T ss_dssp EECCCTTCEEHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred EEEcCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence 9999999999999975 246899999999999999999999 88999999999999999999999999999986
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..+... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+. +..+....
T Consensus 176 ~~~~~~-~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~------~~~i~~~~------ 242 (304)
T 3ubd_A 176 SIDHEK-KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKET------MTMILKAK------ 242 (304)
T ss_dssp -----C-CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCC------
T ss_pred ccCCCc-cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHH------HHHHHcCC------
Confidence 543322 23457899999999999999999999999999999999999999987654321 11222111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDM 896 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~ 896 (973)
+.... .....+.+|+.+||+.||++||++
T Consensus 243 ----~~~p~---~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 243 ----LGMPQ---FLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp ----CCCCT---TSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred ----CCCCC---cCCHHHHHHHHHHcccCHHHCCCC
Confidence 11111 112347799999999999999985
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=9.7e-48 Score=416.62 Aligned_cols=256 Identities=26% Similarity=0.387 Sum_probs=193.1
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC-------
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN------- 696 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 696 (973)
++|+..+.||+|+||+||+|+.. +|+.||||+++.. ......+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLP-NRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEEC-SSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEecc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 56899999999999999999875 6899999999754 24555678999999999999999999999987644
Q ss_pred -----eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEE
Q 041143 697 -----ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAK 771 (973)
Q Consensus 697 -----~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~k 771 (973)
..|+||||+++|+|.+++..... ....++..++.|+.||+.||+||| +++||||||||+|||++.++.+|
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vK 158 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCT--IEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVK 158 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCS--GGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEE
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCC--CChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEE
Confidence 36899999999999999976322 234577788999999999999999 88999999999999999999999
Q ss_pred EeeccccccCCCCCc-----------ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhH
Q 041143 772 VSDFGLVKLAPDGEK-----------SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEES 840 (973)
Q Consensus 772 l~DfGla~~~~~~~~-----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~ 840 (973)
|+|||+|+....... ...+..+||+.|||||++.+..|+.++|||||||++|||++ ||.... +.
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~--~~ 233 (299)
T 4g31_A 159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM--ER 233 (299)
T ss_dssp ECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH--HH
T ss_pred EccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc--HH
Confidence 999999986543221 11234679999999999999999999999999999999996 775321 11
Q ss_pred HHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 841 RYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
. ..+..+. .... ............+++.+||+.||++|||+.|+++ +++.+
T Consensus 234 ~---~~~~~~~----------~~~~--p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~--h~~~~ 284 (299)
T 4g31_A 234 V---RTLTDVR----------NLKF--PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE--NAVFE 284 (299)
T ss_dssp H---HHHHHHH----------TTCC--CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT--SGGGC
T ss_pred H---HHHHHHh----------cCCC--CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc--CHhhC
Confidence 0 1011111 0000 1111222334568999999999999999999987 55554
No 16
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=423.15 Aligned_cols=283 Identities=20% Similarity=0.365 Sum_probs=219.2
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe------CCe
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE------GNE 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 697 (973)
++|+..+.||+|+||+||+|+.. +|+.||||+++.........+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999874 69999999998765666677889999999999999999999998764 357
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.|||||||+ |+|.+++.. ...+++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~-----~~~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGl 204 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHS-----SQPLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGM 204 (398)
T ss_dssp EEEEEECCS-EEHHHHHTS-----SSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEeCCC-CCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecce
Confidence 899999995 789998854 357999999999999999999999 88999999999999999999999999999
Q ss_pred cccCCCCC---cceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 778 VKLAPDGE---KSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 778 a~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|+...... .......+||+.|||||++.+. .|+.++||||+||++|||++|+.||.+....+....+ ......
T Consensus 205 a~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I---~~~~g~ 281 (398)
T 4b99_A 205 ARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLI---MMVLGT 281 (398)
T ss_dssp CBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHH---HHHHCC
T ss_pred eeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHH---HHhcCC
Confidence 98654321 2234567899999999998875 5699999999999999999999999877644322111 111000
Q ss_pred -hh------------HHHhhcCccccCCcccHH-----HHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCC
Q 041143 854 -KE------------KFKAAIDPALEVNEETFE-----SISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITD 915 (973)
Q Consensus 854 -~~------------~~~~~~~~~l~~~~~~~~-----~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~ 915 (973)
.. .....+.+. ...... ....+.+|+.+||+.||++|||+.|+++ +++++++..+.+
T Consensus 282 p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~--Hp~f~~~~~p~~ 356 (398)
T 4b99_A 282 PSPAVIQAVGAERVRAYIQSLPPR---QPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR--HPFLAKYHDPDD 356 (398)
T ss_dssp CCGGGTC-----CHHHHHHSSCCC---CCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT--SGGGTTTCCGGG
T ss_pred CChHHhhhhhhhhhhhhhhcCCCc---CCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc--CHhhCcCCCCcc
Confidence 00 000001110 001111 1235779999999999999999999999 899888776665
Q ss_pred CCcccCCCC
Q 041143 916 ESECCSGID 924 (973)
Q Consensus 916 ~~~~~~~~~ 924 (973)
++.+...++
T Consensus 357 ~p~~~~~~~ 365 (398)
T 4b99_A 357 EPDCAPPFD 365 (398)
T ss_dssp SCCCSSCCC
T ss_pred ccCCCCCCC
Confidence 554444333
No 17
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=2.3e-45 Score=409.04 Aligned_cols=200 Identities=25% Similarity=0.386 Sum_probs=171.1
Q ss_pred HHhcCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCC
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGN 696 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 696 (973)
...++|++.+.||+|+||+||+|+.+ .++.||||++.... ...++.+|+++|+.+ +|||||++++++.+.+
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~----~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~ 93 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS----HPIRIAAELQCLTVAGGQDNVMGVKYCFRKND 93 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS----CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETT
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc----CHHHHHHHHHHHHHhcCCCCCceEEEEEEECC
Confidence 45678999999999999999999753 46789999986532 234678999999998 6999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC-CCEEEeec
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD-YRAKVSDF 775 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~-~~~kl~Df 775 (973)
..|+||||+++|+|.+++. .+++.++..++.||+.||+||| +++||||||||+|||++.+ +.+||+||
T Consensus 94 ~~~lvmE~~~g~~L~~~~~--------~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DF 162 (361)
T 4f9c_A 94 HVVIAMPYLEHESFLDILN--------SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDF 162 (361)
T ss_dssp EEEEEEECCCCCCHHHHHT--------TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCC
T ss_pred EEEEEEeCCCcccHHHHHc--------CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcC
Confidence 9999999999999999883 3789999999999999999999 8899999999999999877 79999999
Q ss_pred cccccCCCCCc---------------------------ceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHh
Q 041143 776 GLVKLAPDGEK---------------------------SVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLT 827 (973)
Q Consensus 776 Gla~~~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~ellt 827 (973)
|+|+...+... ...+..+||+.|||||++.+. .|+.++||||+||++|||++
T Consensus 163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~ 242 (361)
T 4f9c_A 163 GLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLS 242 (361)
T ss_dssp TTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHH
Confidence 99985443211 112345899999999999875 58999999999999999999
Q ss_pred CCCCCCCCC
Q 041143 828 GLAALDEER 836 (973)
Q Consensus 828 g~~p~~~~~ 836 (973)
|+.||....
T Consensus 243 G~~Pf~~~~ 251 (361)
T 4f9c_A 243 GRYPFYKAS 251 (361)
T ss_dssp TCSSSSCCS
T ss_pred CCCCCCCCC
Confidence 999996554
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-45 Score=449.85 Aligned_cols=91 Identities=26% Similarity=0.446 Sum_probs=69.3
Q ss_pred ccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCCC---Cccc
Q 041143 364 SCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPEF---HDTV 440 (973)
Q Consensus 364 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~---~~~~ 440 (973)
.+..++.|+.|+|++|+++|.+|..|+++++|+.|||++|+|+|.+|..|..+++|++||||+|+|+|.+|.. ..+.
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 730 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCC
Confidence 3556677777777777777788878888888888888888888888888888888888888888888888753 3344
Q ss_pred ceeecCCccccCCC
Q 041143 441 KLVIDGNPLLVGGI 454 (973)
Q Consensus 441 ~~~~~~N~~~c~~~ 454 (973)
...+.|||.+||.+
T Consensus 731 ~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 731 PAKFLNNPGLCGYP 744 (768)
T ss_dssp GGGGCSCTEEESTT
T ss_pred HHHhcCCchhcCCC
Confidence 46688899999854
No 19
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=2.3e-44 Score=398.80 Aligned_cols=283 Identities=40% Similarity=0.706 Sum_probs=236.4
Q ss_pred HHHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 619 VLRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 619 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
++...+++|...+.||+|+||.||+|++.+|+.||||++... .....+.+.+|++++++++||||+++++++.+.+..
T Consensus 33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 110 (321)
T 2qkw_B 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE--SSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM 110 (321)
T ss_dssp CCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC--CSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred HHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc--ChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence 344567899999999999999999999888999999998754 334567899999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccc
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLV 778 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla 778 (973)
++||||+++|+|.+++.... .....++|.+++.++.||++||+||| +++|+||||||+||+++.++.+||+|||++
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 186 (321)
T 2qkw_B 111 ILIYKYMENGNLKRHLYGSD-LPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGIS 186 (321)
T ss_dssp EEEEECCTTCBTGGGSSSSC-CCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHhccC-CCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence 99999999999999886522 22346899999999999999999999 789999999999999999999999999999
Q ss_pred ccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 779 KLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 779 ~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
+...... ........||+.|+|||++.+..++.++|||||||++|||++|+.||....+.+......|...... ...+
T Consensus 187 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~ 265 (321)
T 2qkw_B 187 KKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-NGQL 265 (321)
T ss_dssp EECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHT-TTCC
T ss_pred cccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccc-cccH
Confidence 8544322 2223445699999999999999999999999999999999999999987766555555555543322 3334
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...+++.+. .....+....+.+++.+|++.||++||++.||++.|+.+.+.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 266 EQIVDPNLA-DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp CSSSSSSCT-TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHhcChhhc-cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 455555554 344567778899999999999999999999999999988764
No 20
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=5.7e-44 Score=417.22 Aligned_cols=255 Identities=24% Similarity=0.306 Sum_probs=201.4
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC----CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV----TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~----~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
++|+..++||+|+||.||+|+.. +|+.||||+++... ...........++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 57999999999999999999875 69999999996431 11222223344566777789999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||++||+|.+++.+ ...+++..+..++.||+.||+||| +++||||||||+|||++.+|.+||+|||+|+
T Consensus 269 lVmEy~~GGdL~~~l~~-----~~~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~ 340 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQ-----HGVFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLAC 340 (689)
T ss_dssp EEECCCCSCBHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEecCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceee
Confidence 99999999999999975 246899999999999999999999 8999999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
...... ....+||+.|||||++.. ..|+.++||||+||++|||++|+.||......+...+ ...+....
T Consensus 341 ~~~~~~---~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i---~~~i~~~~---- 410 (689)
T 3v5w_A 341 DFSKKK---PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEI---DRMTLTMA---- 410 (689)
T ss_dssp ECSSCC---CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHH---HHHHHHCC----
T ss_pred ecCCCC---CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHhhcCCC----
Confidence 665432 345689999999999975 5799999999999999999999999975433222111 11111111
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCC-----HhHHHHHHHHhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPD-----MGHVVNVLSPLVE 908 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs-----~~~v~~~L~~~~~ 908 (973)
..+. . .....+.+|+.+||+.||.+|++ +.||.+ +++.+
T Consensus 411 ----~~~p--~---~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~--HpfF~ 454 (689)
T 3v5w_A 411 ----VELP--D---SFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE--SPFFR 454 (689)
T ss_dssp ----CCCC--T---TSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT--SGGGT
T ss_pred ----CCCC--c---cCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc--Ccccc
Confidence 1111 0 11234779999999999999998 677776 55543
No 21
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.3e-43 Score=419.01 Aligned_cols=258 Identities=24% Similarity=0.367 Sum_probs=212.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++... .....+.+.+|+++|+.++|||||++++++.+.+..||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~--~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP--HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc--chhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 468999999999999999999875 6999999999764 4555678999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC--CCEEEeecccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD--YRAKVSDFGLVKL 780 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~--~~~kl~DfGla~~ 780 (973)
|||+||+|.+++.. ....+++.++..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+.
T Consensus 234 E~~~gg~L~~~i~~----~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~ 306 (573)
T 3uto_A 234 EFMSGGELFEKVAD----EHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAH 306 (573)
T ss_dssp ECCCCCBHHHHHTC----TTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEE
T ss_pred eecCCCcHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeE
Confidence 99999999999854 1246899999999999999999999 8899999999999999854 8999999999997
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... .....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+. +..+......
T Consensus 307 ~~~~~--~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~------~~~i~~~~~~---- 374 (573)
T 3uto_A 307 LDPKQ--SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET------LRNVKSCDWN---- 374 (573)
T ss_dssp CCTTS--EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHTTCCC----
T ss_pred ccCCC--ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH------HHHHHhCCCC----
Confidence 65433 34456899999999999999999999999999999999999999987654322 1111111100
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
++.. ........+.+|+.+||+.||.+||++.|+++ +++++.
T Consensus 375 ~~~~-----~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~--Hpw~~~ 416 (573)
T 3uto_A 375 MDDS-----AFSGISEDGKDFIRKLLLADPNTRMTIHQALE--HPWLTP 416 (573)
T ss_dssp CCSG-----GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--STTTSC
T ss_pred CCcc-----cccCCCHHHHHHHHHHccCChhHCcCHHHHhc--CcCcCC
Confidence 0000 00111234779999999999999999999998 666654
No 22
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=8.1e-44 Score=395.44 Aligned_cols=291 Identities=41% Similarity=0.674 Sum_probs=236.7
Q ss_pred ceeecHHHHHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeE
Q 041143 612 TLVISVQVLRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGY 691 (973)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~ 691 (973)
...++..+++...++|...+.||+|+||.||+|+..+|+.||||++..... ......+.+|++++++++||||++++++
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC------CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccC-chHHHHHHHHHHHHHhccCCCccceEEE
Confidence 456788899999999999999999999999999988899999999875421 2222368999999999999999999999
Q ss_pred EEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEE
Q 041143 692 SIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAK 771 (973)
Q Consensus 692 ~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~k 771 (973)
+...+..++||||+++|+|.+++..... ....++|..+..++.|++.||+|||+.+..+|+||||||+||+++.++.+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPE-SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCST-TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence 9999999999999999999999976332 335699999999999999999999943333999999999999999999999
Q ss_pred EeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCCh--hhHHHHHHHHHH
Q 041143 772 VSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERP--EESRYLAEWFWR 849 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~--~~~~~~~~~~~~ 849 (973)
|+|||+++..............||+.|+|||++.+..++.++|||||||++|||++|+.||+.... ........|+..
T Consensus 175 l~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 175 VGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp ECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred eccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 999999987665555555667799999999999999999999999999999999999999962211 111223334333
Q ss_pred HhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 850 IKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
... .......++..+. .....+....+.+++.+|++.||.+|||+.||++.|++.
T Consensus 255 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 255 LLK-EKKLEALVDVDLQ-GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTS-SCCSTTSSCTTCT-TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred Hhh-chhhhhhcChhhc-cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 222 2233444455444 345567788899999999999999999999999999764
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.1e-43 Score=428.93 Aligned_cols=408 Identities=21% Similarity=0.287 Sum_probs=285.5
Q ss_pred CCCChhHHHHHHHHHhhCCCCccCCCCCCC----CCCCCCCCc------------CeEEeeC-CeEEEEEecccCCcccC
Q 041143 21 SATDPNDLKILNDFKNGLENPELLKWPANG----DDPCGPPPW------------PHVFCSG-NRVTQIQVQNLGLKGPL 83 (973)
Q Consensus 21 ~~~~~~~~~~l~~~k~~~~~~~l~~w~~~~----~d~C~~~~w------------~gv~C~~-~~v~~L~L~~~~l~g~~ 83 (973)
+++...|..||++||+++.+| +|...+ .+||. |.| .||.|+. ++|+.|+|++++|+|.+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~-C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHS-LNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCC-CSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred cccchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCc-cccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 455678999999999999876 785543 46621 239 9999984 89999999999999999
Q ss_pred CcCcccccccceeec-cCcccCCC--------------------------------------------------------
Q 041143 84 PQNFNQLTKLYNLGL-QRNKFNGK-------------------------------------------------------- 106 (973)
Q Consensus 84 ~~~~~~l~~L~~L~L-~~N~l~~~-------------------------------------------------------- 106 (973)
|++|++|++|++|+| ++|.++|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765443
Q ss_pred --------------------CC-CCCCCCccceeeccCCCCCC------------------CCccc-cCCCCCccEEEcc
Q 041143 107 --------------------LP-TFSGLSELEFAYLDFNEFDT------------------IPSDF-FDGLSSVRVLALD 146 (973)
Q Consensus 107 --------------------~~-~~~~l~~L~~L~L~~N~l~~------------------i~~~~-f~~l~~L~~L~Ls 146 (973)
+| .|.++++|++|+|++|+|+. +|... |.++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 44 68889999999999999998 77664 5599999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeeccccc-ccC-CcchhccCCC-------CCCeEEccCCcCcccCCh--hhhhhHH
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCN-LVG-PLPDFLGTLP-------SLAALKLSYNRLSGVIPA--SFGQSLM 215 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~~~~ 215 (973)
+|++.+. +|..|+++++|+.|+|++|+ +++ .+|..+++++ +|++|+|++|+++ .+|. .+.. +.
T Consensus 500 ~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-L~ 573 (876)
T 4ecn_A 500 NCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-MV 573 (876)
T ss_dssp SCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-CT
T ss_pred CCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-CC
Confidence 9998875 89999999999999999998 888 7888776655 9999999999998 8887 6643 33
Q ss_pred HHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCC-CCEEeCcCCcccccCccccccc---ccCeE
Q 041143 216 QILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSS-LKDLNLNRNQLVGLIPKSLANM---ELDNL 291 (973)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l---~L~~L 291 (973)
.+..|....+.....+ .|.++++|+.|+|++|+++ .+|..+..+++ |+.|+|++|+|+ .+|..+... +|+.|
T Consensus 574 ~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcccch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 3444444444444333 7888999999999999999 88989999998 999999999998 678877765 38999
Q ss_pred EccCCcCcCCCCCCCCCC-----cccccCcccCCCCCcccCC-cchhhhhhccCCCCCCcccCCCCCCCCCCCCcccccc
Q 041143 292 VLNNNLLMGPIPKFKAGN-----VTYDSNSFCQSEPGIECAP-DVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSC 365 (973)
Q Consensus 292 ~l~~N~l~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~ 365 (973)
+|++|.+.|.+|...... ..+....+..+... ..+ .....+..+..++++.|.+..++...... ....+
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~---~~~~l 724 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPENSLKP---KDGNY 724 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC---TTSCC
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCcCCccChHHhcc---ccccc
Confidence 999999998877543110 11222233222221 222 22223556778888888887766532110 00012
Q ss_pred CCCCcccEEecCCCcCCCccchhhh--CccccceEEccCCccccccCccccCcCCCCeeeCCC------CcCCCCCCC--
Q 041143 366 TSNSKVSIINLPRHNLTGTLSPSIA--NLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSD------NNIKPPLPE-- 435 (973)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~------N~l~g~~p~-- 435 (973)
.++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |++.+.+|.
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 23335555555555555 4455544 55555555555555554 455555555555555543 445555442
Q ss_pred --CCcccceeecCCcc
Q 041143 436 --FHDTVKLVIDGNPL 449 (973)
Q Consensus 436 --~~~~~~~~~~~N~~ 449 (973)
+.++..|++.+|.+
T Consensus 803 ~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGCSSCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCCC
Confidence 23334455555544
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-42 Score=420.05 Aligned_cols=414 Identities=19% Similarity=0.222 Sum_probs=303.3
Q ss_pred CCChhHHHHHHHHHhhCCCCcc----------CCCCCCCCCCCCCCCc---CeEEeeC-CeEEEEEecccCCcccCCcCc
Q 041143 22 ATDPNDLKILNDFKNGLENPEL----------LKWPANGDDPCGPPPW---PHVFCSG-NRVTQIQVQNLGLKGPLPQNF 87 (973)
Q Consensus 22 ~~~~~~~~~l~~~k~~~~~~~l----------~~w~~~~~d~C~~~~w---~gv~C~~-~~v~~L~L~~~~l~g~~~~~~ 87 (973)
+....|+.||.+|+.++..+.. .+|.. +.|||. | .||.|+. ++|+.|+|++++++|.+|++|
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~---w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDM---WGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGG---TTCCTTEEECTTCCEEEEECTTSCCEEEECGGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCccc---ccCCCCeEEcCCCCEEEEEecCcccCCcCChHH
Confidence 4456799999999999876542 36864 578998 9 9999975 699999999999999999999
Q ss_pred ccccccceeeccCcc-----------------------------------------------------------------
Q 041143 88 NQLTKLYNLGLQRNK----------------------------------------------------------------- 102 (973)
Q Consensus 88 ~~l~~L~~L~L~~N~----------------------------------------------------------------- 102 (973)
++|++|++|+|++|.
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 999999999999984
Q ss_pred -------------cCCCCCCCCCCCccceeeccCCCCCC------------------CCccccC--CCCCccEEEcccCC
Q 041143 103 -------------FNGKLPTFSGLSELEFAYLDFNEFDT------------------IPSDFFD--GLSSVRVLALDYNP 149 (973)
Q Consensus 103 -------------l~~~~~~~~~l~~L~~L~L~~N~l~~------------------i~~~~f~--~l~~L~~L~Ls~N~ 149 (973)
++++++.|.++++|++|+|++|+|+. +|.. +. ++++|++|+|++|+
T Consensus 182 ~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCc
Confidence 34533368889999999999999998 6654 66 89999999999999
Q ss_pred CCCccCCCCCcccccccccCeeeccccc-ccC-CcchhccCC------CCCCeEEccCCcCcccCCh--hhhhhHHHHHh
Q 041143 150 FNKTFGWSIPDSLANSVQLTNLSLINCN-LVG-PLPDFLGTL------PSLAALKLSYNRLSGVIPA--SFGQSLMQILW 219 (973)
Q Consensus 150 l~~~~~~~ip~~~~~l~~L~~L~L~~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~--~~~~~~~~~~~ 219 (973)
+.+. +|..++++++|++|+|++|+ ++| .+|..++++ ++|++|+|++|+++ .+|. .+.. +..+..
T Consensus 261 l~~~----~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~ 334 (636)
T 4eco_A 261 NLTK----LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGM 334 (636)
T ss_dssp TCSS----CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCE
T ss_pred CCcc----ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCE
Confidence 8885 89999999999999999998 888 889888876 89999999999998 7887 6643 333444
Q ss_pred hcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCC-CCEEeCcCCcccccCccccccc---ccCeEEccC
Q 041143 220 LNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSS-LKDLNLNRNQLVGLIPKSLANM---ELDNLVLNN 295 (973)
Q Consensus 220 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l---~L~~L~l~~ 295 (973)
|+...+......+ .|.++++|++|+|++|+++ .+|..+..+++ |++|+|++|+++ .+|..+... +|+.|++++
T Consensus 335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp EECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred EeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence 4444444431222 7888899999999999999 88888999998 999999999999 678777665 589999999
Q ss_pred CcCcCCCCCCCC-------CCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCC------------
Q 041143 296 NLLMGPIPKFKA-------GNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPC------------ 356 (973)
Q Consensus 296 N~l~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~------------ 356 (973)
|.+++.+|..+. ....+....+.++... .........+..+..++++.|.+..++.....
T Consensus 412 N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L 490 (636)
T 4eco_A 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490 (636)
T ss_dssp SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred CcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence 999988887554 2222333333333222 11112222355677777877777766543211
Q ss_pred --------CCCccccccC--CCCcccEEecCCCcCCCccchhhhCccccceEEc------cCCccccccCccccCcCCCC
Q 041143 357 --------QGPWLGLSCT--SNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRL------GKNSISGTVPNNFTELKSLR 420 (973)
Q Consensus 357 --------~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~g~~p~~~~~l~~L~ 420 (973)
........+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..|..+++|+
T Consensus 491 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp CEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred cEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 0011111222 56677777777777776 6666777777777777 45666667777777777777
Q ss_pred eeeCCCCcCCCCCCC--CCcccceeecCCccccC
Q 041143 421 LLDVSDNNIKPPLPE--FHDTVKLVIDGNPLLVG 452 (973)
Q Consensus 421 ~L~Ls~N~l~g~~p~--~~~~~~~~~~~N~~~c~ 452 (973)
.|+|++|+| +.+|. ..++..+++.+|++.|-
T Consensus 570 ~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 570 QLQIGSNDI-RKVNEKITPNISVLDIKDNPNISI 602 (636)
T ss_dssp EEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEE
T ss_pred EEECCCCcC-CccCHhHhCcCCEEECcCCCCccc
Confidence 777777777 44443 24455567777777664
No 25
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.2e-42 Score=382.01 Aligned_cols=267 Identities=32% Similarity=0.510 Sum_probs=208.6
Q ss_pred HhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
..++|...+.||+|+||.||+|+.. |+.||||++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 3568999999999999999999874 889999999876556677788999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||+++|+|.+++..... ...+++..++.++.||++||+||| +.+ |+||||||+||+++.++.+||+|||+++.
T Consensus 114 e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 188 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGA--REQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188 (309)
T ss_dssp ECCTTCBHHHHHHSTTH--HHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC----
T ss_pred ecCCCCcHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcc
Confidence 99999999999975321 234899999999999999999999 778 99999999999999999999999999985
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+... ....
T Consensus 189 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~------~~~~-------- 253 (309)
T 3p86_A 189 KASTF-LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVA------AVGF-------- 253 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHH------HHHH--------
T ss_pred ccccc-cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH------HHHh--------
Confidence 44322 22344679999999999999999999999999999999999999998765432211 1100
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCC
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPI 913 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~ 913 (973)
....... +......+.+++.+|++.||++||++.+|++.|+.+++...+.
T Consensus 254 ~~~~~~~---~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~ 303 (309)
T 3p86_A 254 KCKRLEI---PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPP 303 (309)
T ss_dssp SCCCCCC---CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-----
T ss_pred cCCCCCC---CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCC
Confidence 0011110 1112235789999999999999999999999999998865443
No 26
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=7e-42 Score=385.70 Aligned_cols=265 Identities=25% Similarity=0.392 Sum_probs=215.7
Q ss_pred hcCccccCcccccCccEEEEEEEC--------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEe
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE--------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIE 694 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 694 (973)
.++|...+.||+|+||.||+|++. ++..||||+++.. ......+.+.+|+++++++ +||||+++++++.+
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 158 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 158 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT-CBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC-cCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence 367889999999999999999752 3567999999765 3455677899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhh-----------ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEK-----------LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNIL 763 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nil 763 (973)
.+..++||||+++|+|.+++..... .....+++.+++.++.||++||+||| +++|+||||||+|||
T Consensus 159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIl 235 (370)
T 2psq_A 159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVL 235 (370)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEE
Confidence 9999999999999999999976431 12245899999999999999999999 789999999999999
Q ss_pred ECCCCCEEEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHH
Q 041143 764 LDDDYRAKVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESR 841 (973)
Q Consensus 764 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~ 841 (973)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+..
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~ 315 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF 315 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 99999999999999986543322 22234567889999999999999999999999999999999 99999876543221
Q ss_pred HHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 842 YLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
. .+.. ...+.. +......+.+++.+|++.||++||++.|+++.|+.++...
T Consensus 316 ~------~~~~-------~~~~~~-----~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 316 K------LLKE-------GHRMDK-----PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp H------HHHT-------TCCCCC-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred H------HHhc-------CCCCCC-----CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 1 1111 011111 1112245789999999999999999999999999987643
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-41 Score=375.09 Aligned_cols=225 Identities=29% Similarity=0.483 Sum_probs=168.4
Q ss_pred CCChhHHHHHHHHHhhCCCCc-cCCCCCCCCCCCCCCCcCeEEeeC----CeEEEEEecccCCcc--cCCcCcccccccc
Q 041143 22 ATDPNDLKILNDFKNGLENPE-LLKWPANGDDPCGPPPWPHVFCSG----NRVTQIQVQNLGLKG--PLPQNFNQLTKLY 94 (973)
Q Consensus 22 ~~~~~~~~~l~~~k~~~~~~~-l~~w~~~~~d~C~~~~w~gv~C~~----~~v~~L~L~~~~l~g--~~~~~~~~l~~L~ 94 (973)
.|.++|.+||++||+++.+|. +.+|+. +.|||. +.|.||.|+. ++|+.|+|++++++| .+|+.|+++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~-~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCN-RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTT-TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCc-CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 588999999999999998875 678864 578885 4599999985 689999999999999 8999999898888
Q ss_pred eeeccC-cccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 95 NLGLQR-NKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 95 ~L~L~~-N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+|+|++ |.+++.+| ..|.++++|++|+|++|++++. +|..|.++++|++|+|
T Consensus 80 ~L~L~~~n~l~~~~p-----------------------~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L 132 (313)
T 1ogq_A 80 FLYIGGINNLVGPIP-----------------------PAIAKLTQLHYLYITHTNVSGA----IPDFLSQIKTLVTLDF 132 (313)
T ss_dssp EEEEEEETTEESCCC-----------------------GGGGGCTTCSEEEEEEECCEEE----CCGGGGGCTTCCEEEC
T ss_pred eeeCCCCCcccccCC-----------------------hhHhcCCCCCEEECcCCeeCCc----CCHHHhCCCCCCEEeC
Confidence 888884 77776555 2234455555555555555543 6777777788888888
Q ss_pred ccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCc-cccEEEccCCccc
Q 041143 174 INCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMV-SLTQLWLHGNQFT 252 (973)
Q Consensus 174 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~ 252 (973)
++|.|++.+|..|.++++|++|+|++|++++.+|..+. .++ +|++|+|++|+++
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-------------------------~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-------------------------SFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-------------------------CCCTTCCEEECCSSEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-------------------------hhhhcCcEEECcCCeee
Confidence 88888877777777888888888888888777776653 355 7777777777777
Q ss_pred cCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCC
Q 041143 253 GSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGP 301 (973)
Q Consensus 253 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~ 301 (973)
+.+|..+..++ |++|+|++|++++.+|..+..+ +|+.|+|++|.+++.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 77777777776 7777777777777666666655 555555555555443
No 28
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=7.5e-42 Score=378.32 Aligned_cols=255 Identities=22% Similarity=0.345 Sum_probs=213.5
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|+. .+|+.||||++..........+.+.+|+++++.++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 36899999999999999999987 57999999999776556667788999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ..+++.++..++.||++||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 94 e~~~~~~L~~~l~~~-----~~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 165 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH-----GRMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFT 165 (328)
T ss_dssp CCCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGS
T ss_pred ECCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecC
Confidence 999999999999652 45899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcCC-CchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKIT-TKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... .....+||+.|+|||++.+..+. .++||||+||++|||++|+.||......+. ...+...
T Consensus 166 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~------~~~i~~~-------- 229 (328)
T 3fe3_A 166 VGG--KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKEL------RERVLRG-------- 229 (328)
T ss_dssp SSC--GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC--------
T ss_pred CCC--ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHH------HHHHHhC--------
Confidence 432 24556899999999999888875 789999999999999999999987654321 1111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...... .....+.+++.+|++.||.+|||+.|+++ ++++..
T Consensus 230 --~~~~p~---~~s~~~~~li~~~L~~dP~~R~t~~eil~--h~~~~~ 270 (328)
T 3fe3_A 230 --KYRIPF---YMSTDCENLLKRFLVLNPIKRGTLEQIMK--DRWINA 270 (328)
T ss_dssp --CCCCCT---TSCHHHHHHHHHHCCSSTTTSCCHHHHTT--CTTTTT
T ss_pred --CCCCCC---CCCHHHHHHHHHHCCCChhHCcCHHHHhc--CHhhcC
Confidence 111000 11234779999999999999999999998 666654
No 29
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=3.5e-42 Score=381.13 Aligned_cols=272 Identities=25% Similarity=0.353 Sum_probs=210.0
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC----eEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN----ERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~l 700 (973)
++|+..+.||+|+||.||+|+.. ++.||||++... ......+.+|+.++++++|||||++++++.... ..++
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ---DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC---chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 68899999999999999999887 789999998643 334456677999999999999999999998754 4699
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC----------CeeeccCCCCcEEECCCCCE
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ----------TFIHRDLKSSNILLDDDYRA 770 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~----------~ivH~Dikp~Nill~~~~~~ 770 (973)
||||+++|+|.+++.. ..++|..+..++.|+++||+||| +. +|+||||||+|||++.++.+
T Consensus 100 v~e~~~~g~L~~~l~~------~~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~ 170 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKA------NVVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTA 170 (322)
T ss_dssp EEECCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCE
T ss_pred EEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeE
Confidence 9999999999999965 45899999999999999999999 66 99999999999999999999
Q ss_pred EEeeccccccCCCCCc-ceecccccccCccccccccc-----CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHH
Q 041143 771 KVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVM-----GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLA 844 (973)
Q Consensus 771 kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~ 844 (973)
||+|||+++....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||............
T Consensus 171 kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~ 250 (322)
T 3soc_A 171 CIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFE 250 (322)
T ss_dssp EECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTH
T ss_pred EEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchh
Confidence 9999999985543322 22334679999999999876 35667899999999999999999999765432111100
Q ss_pred HHHHHHhhchhHH----HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 845 EWFWRIKSSKEKF----KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 845 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
............. .....+.+............+.+++.+||+.||++|||+.||++.|+.+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 251 EEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0000000000000 1111122221112234556789999999999999999999999999998764
No 30
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=4.6e-41 Score=369.84 Aligned_cols=285 Identities=39% Similarity=0.669 Sum_probs=234.4
Q ss_pred ceeecHHHHHHHhcCcccc------CcccccCccEEEEEEECCCCEEEEEEeecCC--CChHHHHHHHHHHHHHHhcCCC
Q 041143 612 TLVISVQVLRKVTQNFAQE------NELGRGGFGTVYKGELEDGTKIAVKRMEAGV--TTTKALDEFQSEIAVLSKVRHR 683 (973)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~------~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~--~~~~~~~~~~~E~~~l~~l~h~ 683 (973)
...++..++..++++|... +.||+|+||.||+|.. +++.||||++.... ......+.+.+|++++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4568899999999999887 8999999999999987 48899999986532 2344567899999999999999
Q ss_pred ceeeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEE
Q 041143 684 HLVSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNIL 763 (973)
Q Consensus 684 niv~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nil 763 (973)
||+++++++.+.+..++||||+++|+|.+++.... ....++|..++.++.||+.||+||| +++|+||||||+||+
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil 165 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD--GTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANIL 165 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGG--GCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEE
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEE
Confidence 99999999999999999999999999999997532 2356899999999999999999999 789999999999999
Q ss_pred ECCCCCEEEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHH
Q 041143 764 LDDDYRAKVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRY 842 (973)
Q Consensus 764 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 842 (973)
++.++.+||+|||+++....... .......||+.|+|||.+.+ .++.++|||||||++|||++|+.||....... .
T Consensus 166 i~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~--~ 242 (307)
T 2nru_A 166 LDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ--L 242 (307)
T ss_dssp ECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS--B
T ss_pred EcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH--H
Confidence 99999999999999986544322 22344679999999998754 68999999999999999999999998654322 1
Q ss_pred HHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 843 LAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
+..+..........+...+++.+. .........+.+++.+|++.||.+||++.+|++.|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~ 305 (307)
T 2nru_A 243 LLDIKEEIEDEEKTIEDYIDKKMN--DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305 (307)
T ss_dssp TTHHHHHHHTTSCCHHHHSCSSCS--CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhhhhhcccccc--ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 122222333333345566666553 344566778999999999999999999999999998874
No 31
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.3e-41 Score=371.83 Aligned_cols=256 Identities=23% Similarity=0.412 Sum_probs=210.7
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|.. .+|+.||||++...... ..+.+.+|+.++++++||||+++++++..++..++||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 96 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP--KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM 96 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCS--CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccccc--HHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEE
Confidence 46899999999999999999986 56899999998754222 2457889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++.. ..+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++...
T Consensus 97 e~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (297)
T 3fxz_A 97 EYLAGGSLTDVVTE------TCMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQIT 167 (297)
T ss_dssp ECCTTCBHHHHHHH------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred ECCCCCCHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecC
Confidence 99999999999865 35899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........... +. ....
T Consensus 168 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~------~~-------~~~~ 233 (297)
T 3fxz_A 168 PEQS-KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYL------IA-------TNGT 233 (297)
T ss_dssp STTC-CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH------HH-------HHCS
T ss_pred Cccc-ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH------HH-------hCCC
Confidence 4332 23456799999999999999999999999999999999999999987654322111 00 0011
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
+.+. ........+.+++.+|++.||++||++.|+++ +++++.
T Consensus 234 ~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~--h~~~~~ 275 (297)
T 3fxz_A 234 PELQ---NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ--HQFLKI 275 (297)
T ss_dssp CCCS---CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT--CGGGGG
T ss_pred CCCC---CccccCHHHHHHHHHHccCChhHCcCHHHHhh--Chhhcc
Confidence 1111 01112244779999999999999999999998 666554
No 32
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=378.81 Aligned_cols=257 Identities=25% Similarity=0.409 Sum_probs=202.0
Q ss_pred HhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|+. .+|+.||||++..... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv 86 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTL-GSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMV 86 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEcccc-chHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEE
Confidence 457899999999999999999986 5789999999976532 23345789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ..+++.++..++.||+.||+||| +.+|+||||||+||++++++.+||+|||++...
T Consensus 87 ~E~~~gg~L~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~ 158 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQ-----DRLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKP 158 (347)
T ss_dssp EECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC-
T ss_pred EeCCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccc
Confidence 9999999999999652 45899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
...........+||+.|+|||++.+..+ +.++||||+||++|||++|+.||......+. ...+....
T Consensus 159 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~------~~~i~~~~------ 226 (347)
T 3zgw_A 159 KGNKDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMAL------YKKIMRGK------ 226 (347)
T ss_dssp -------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTC------
T ss_pred cCCCCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHcCC------
Confidence 5444334456789999999999988775 8999999999999999999999987653221 11111111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... .....+.+++.+|++.||++|||+.|+++ ++++..
T Consensus 227 ----~~~p~---~~s~~~~~li~~~L~~dP~~Rps~~eil~--hp~~~~ 266 (347)
T 3zgw_A 227 ----YDVPK---WLSPSSILLLQQMLQVDPKKRISMKNLLN--HPWIMQ 266 (347)
T ss_dssp ----CCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHT--CHHHHT
T ss_pred ----CCCCC---CCCHHHHHHHHHHcccCHhHCcCHHHHhc--Ccchhc
Confidence 11000 11234678999999999999999999998 666654
No 33
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=370.05 Aligned_cols=261 Identities=25% Similarity=0.404 Sum_probs=213.4
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|...+.||+|+||.||+|... +++.||+|++... .....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 87 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF--DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE 87 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence 57888999999999999999875 5899999988643 56677889999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++... ...+++.++..++.|+++||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 160 (310)
T 3s95_A 88 YIKGGTLRGIIKSM----DSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVD 160 (310)
T ss_dssp CCTTCBHHHHHHHC----CTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-
T ss_pred ecCCCcHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccc
Confidence 99999999999652 256899999999999999999999 78999999999999999999999999999986543
Q ss_pred CCcce-------------ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 784 GEKSV-------------VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 784 ~~~~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
..... .....||+.|+|||++.+..++.++|||||||++|||++|..|+.............
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~----- 235 (310)
T 3s95_A 161 EKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN----- 235 (310)
T ss_dssp -------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC-----
T ss_pred ccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh-----
Confidence 32211 114679999999999999999999999999999999999999987654322110000
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
..........+.+. ..+.+++.+|++.||++||++.++++.|+.+.+..
T Consensus 236 --~~~~~~~~~~~~~~---------~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~ 284 (310)
T 3s95_A 236 --VRGFLDRYCPPNCP---------PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHL 284 (310)
T ss_dssp --HHHHHHHTCCTTCC---------TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred --hhccccccCCCCCC---------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence 01111111222221 23779999999999999999999999999987754
No 34
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.3e-41 Score=365.47 Aligned_cols=266 Identities=24% Similarity=0.386 Sum_probs=210.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|+..+.||+|+||.||+|+.. +++.||+|++.... ......+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 368999999999999999999865 68999999986542 3455667899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ..+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++..
T Consensus 90 ~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~ 161 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH-----GPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL 161 (294)
T ss_dssp EECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred EeCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence 9999999999999652 46899999999999999999999 789999999999999999999999999999866
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
............||+.|+|||.+.+..++.++|||||||++|||++|+.||......... ..............+
T Consensus 162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-----~~~~~~~~~~~~~~~ 236 (294)
T 4eqm_A 162 SETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIA-----IKHIQDSVPNVTTDV 236 (294)
T ss_dssp -------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHH-----HHHHSSCCCCHHHHS
T ss_pred ccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-----HHHhhccCCCcchhc
Confidence 544333344567999999999999999999999999999999999999999876543211 011111001111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCC-CHhHHHHHHHHhhhhcC
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRP-DMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-s~~~v~~~L~~~~~~~~ 911 (973)
.+ .....+.+++.+|++.||++|| +++++.+.|+.+.....
T Consensus 237 ~~---------~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~ 278 (294)
T 4eqm_A 237 RK---------DIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENR 278 (294)
T ss_dssp CT---------TSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred cc---------CCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence 11 1224578999999999999999 89999998887766433
No 35
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=4.5e-41 Score=371.82 Aligned_cols=266 Identities=23% Similarity=0.394 Sum_probs=216.2
Q ss_pred eecHHHHHHHhcC----------ccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCC
Q 041143 614 VISVQVLRKVTQN----------FAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRH 682 (973)
Q Consensus 614 ~~~~~~~~~~~~~----------~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h 682 (973)
.++.++++.+++. |...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h 101 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRK--QQRRELLFNEVVIMRDYQH 101 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT--CCSHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccc--hhHHHHHHHHHHHHHhCCC
Confidence 3566777777654 677789999999999999876 79999999997542 2334678899999999999
Q ss_pred CceeeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcE
Q 041143 683 RHLVSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNI 762 (973)
Q Consensus 683 ~niv~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Ni 762 (973)
|||+++++++...+..++||||+++|+|.+++.. ..+++..+..++.||+.||+||| +.+|+||||||+||
T Consensus 102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~------~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NI 172 (321)
T 2c30_A 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ------VRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSI 172 (321)
T ss_dssp TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGE
T ss_pred CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHE
Confidence 9999999999999999999999999999998854 46899999999999999999999 78999999999999
Q ss_pred EECCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHH
Q 041143 763 LLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRY 842 (973)
Q Consensus 763 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 842 (973)
+++.++.+||+|||+++....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.
T Consensus 173 ll~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~-- 249 (321)
T 2c30_A 173 LLTLDGRVKLSDFGFCAQISKDVP-KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQA-- 249 (321)
T ss_dssp EECTTCCEEECCCTTCEECCSSSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH--
T ss_pred EECCCCcEEEeeeeeeeecccCcc-ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--
Confidence 999999999999999986544322 23456799999999999999999999999999999999999999986653221
Q ss_pred HHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 843 LAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. .+.....+.+.. .......+.+++.+|++.||++||++.|+++ ++++.+
T Consensus 250 ----~~-------~~~~~~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rps~~ell~--hp~~~~ 300 (321)
T 2c30_A 250 ----MK-------RLRDSPPPKLKN---SHKVSPVLRDFLERMLVRDPQERATAQELLD--HPFLLQ 300 (321)
T ss_dssp ----HH-------HHHHSSCCCCTT---GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT--SGGGGG
T ss_pred ----HH-------HHhcCCCCCcCc---cccCCHHHHHHHHHHccCChhhCcCHHHHhc--Chhhcc
Confidence 11 111112222211 1112234779999999999999999999998 566554
No 36
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.7e-41 Score=365.75 Aligned_cols=256 Identities=29% Similarity=0.456 Sum_probs=213.1
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
++|...+.||+|+||.||+|...+++.||||++...... .+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF 86 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence 578889999999999999999988999999999765333 35689999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDG 784 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~ 784 (973)
+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 87 ~~~~~L~~~l~~~----~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~ 159 (269)
T 4hcu_A 87 MEHGCLSDYLRTQ----RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 159 (269)
T ss_dssp CTTCBHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCCCcHHHHHHhc----CcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEecccccccccccc
Confidence 9999999999652 246899999999999999999999 889999999999999999999999999999866543
Q ss_pred CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 785 EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 785 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.........||+.|+|||++.+..++.++||||+|+++|||++ |+.||......+.. ..+.. ....
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~------~~~~~-------~~~~ 226 (269)
T 4hcu_A 160 QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVV------EDIST-------GFRL 226 (269)
T ss_dssp HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH------HHHHT-------TCCC
T ss_pred ccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHH------HHHhc-------CccC
Confidence 3333344567889999999999999999999999999999999 99999876543211 11111 1111
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
... ......+.+++.+|++.||++||++.|+++.|+++.+
T Consensus 227 ~~~-----~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 227 YKP-----RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp CCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCC-----CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 111 1112447899999999999999999999999999876
No 37
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=374.96 Aligned_cols=260 Identities=26% Similarity=0.433 Sum_probs=211.2
Q ss_pred hcCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.++|...+.||+|+||.||+|.+. .+..||||+++.. ......+.|.+|++++++++||||+++++++.+++..+
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 126 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG-YTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM 126 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence 367889999999999999999874 3456999999764 34556678999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++.+++.++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++
T Consensus 127 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 199 (325)
T 3kul_A 127 IVTEYMENGSLDTFLRTH----DGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199 (325)
T ss_dssp EEEECCTTCBHHHHHHTT----TTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCE
T ss_pred EEeeCCCCCcHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCccc
Confidence 999999999999999652 246899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcc--eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 780 LAPDGEKS--VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 780 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
........ ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. ..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~------~~~~----- 268 (325)
T 3kul_A 200 VLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVI------SSVE----- 268 (325)
T ss_dssp ECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHH------HHHH-----
T ss_pred ccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHH------HHHH-----
Confidence 66543222 2233456788999999999999999999999999999999 99999776543211 1111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... .......+.+++..|++.||++||++.||++.|+.+.+.
T Consensus 269 --~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 269 --EGYRLPA-----PMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp --TTCCCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred --cCCCCCC-----CCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence 1111111 112234578999999999999999999999999999874
No 38
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=4.3e-41 Score=362.34 Aligned_cols=258 Identities=28% Similarity=0.436 Sum_probs=214.2
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|+..++..||||+++..... .+++.+|++++.+++||||+++++++.+.+..++|||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 83 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS---EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE 83 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC---HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc---HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence 3678899999999999999999998889999999765332 3568999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++... ...+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 84 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~ 156 (268)
T 3sxs_A 84 YISNGCLLNYLRSH----GKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD 156 (268)
T ss_dssp CCTTCBHHHHHHHH----GGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCT
T ss_pred ccCCCcHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecch
Confidence 99999999999763 245899999999999999999999 78999999999999999999999999999987665
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
..........||+.|+|||.+.+..++.++||||||+++|||++ |+.||......+.. ....... ....
T Consensus 157 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~------~~~~~~~----~~~~ 226 (268)
T 3sxs_A 157 DQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV------LKVSQGH----RLYR 226 (268)
T ss_dssp TCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH------HHHHTTC----CCCC
T ss_pred hhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH------HHHHcCC----CCCC
Confidence 54444444567788999999999899999999999999999999 99999876543221 1111100 0011
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
+. .....+.+++.+|++.||++||++.|+++.|+.+.++
T Consensus 227 ~~--------~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 227 PH--------LASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp CT--------TSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred CC--------cChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 11 1123578999999999999999999999999988664
No 39
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.9e-41 Score=382.38 Aligned_cols=259 Identities=25% Similarity=0.460 Sum_probs=201.7
Q ss_pred cCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
++|...+.||+|+||.||+|++. ++..||||+++.. ......+.|.+|++++++++||||+++++++.+.+..++
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG-YTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc-cCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 57899999999999999999865 5778999999764 245566789999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+++|+|.++++.. ...+++.+++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++.
T Consensus 124 v~e~~~~~sL~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 196 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKH----DAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRV 196 (373)
T ss_dssp EEECCTTCBHHHHHHTT----TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred EEeCCCCCcHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccc
Confidence 99999999999999652 246899999999999999999999 78999999999999999999999999999986
Q ss_pred CCCCCcce--ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 781 APDGEKSV--VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 781 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
........ .....+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. ..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~------~~i~~----- 265 (373)
T 2qol_A 197 LEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVI------KAVDE----- 265 (373)
T ss_dssp -----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHH------HHHHT-----
T ss_pred cccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHH------HHHHc-----
Confidence 54432221 122345788999999999999999999999999999998 99999766533211 11110
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.... .........+.+++.+|++.||++||++.+|++.|+.+.+.
T Consensus 266 --~~~~-----~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 266 --GYRL-----PPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp --TEEC-----CCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --CCCC-----CCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 0000 01112234588999999999999999999999999999775
No 40
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=1.4e-41 Score=384.59 Aligned_cols=260 Identities=27% Similarity=0.432 Sum_probs=212.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|++. +++.||||+++.. ......+.|.+|++++++++|||||++++++...+..++||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET-LPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT-SCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc-CCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 367888999999999999999886 6899999998754 34455667999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.++++.. ...+++.+++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 192 e~~~~g~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~ 264 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTE----GARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEA 264 (377)
T ss_dssp ECCTTCBHHHHHHHH----GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECT
T ss_pred EcCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecC
Confidence 999999999999752 245899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCccee-cccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 783 DGEKSVV-TRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 783 ~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
+...... ....+++.|+|||.+....++.++|||||||++|||++ |+.||......+.. ..+ ...
T Consensus 265 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~---~~~----------~~~ 331 (377)
T 3cbl_A 265 DGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTR---EFV----------EKG 331 (377)
T ss_dssp TSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHH---HHH----------HTT
T ss_pred CCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH---HHH----------HcC
Confidence 3221111 12235778999999998999999999999999999998 99999876543221 111 000
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
. .+.... .....+.+++.+||+.||++|||+.+|++.|+.+.++
T Consensus 332 ~--~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 332 G--RLPCPE---LCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp C--CCCCCT---TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred C--CCCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 0 011011 1224577999999999999999999999999998764
No 41
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3e-40 Score=367.16 Aligned_cols=272 Identities=19% Similarity=0.216 Sum_probs=216.2
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+. .+|+.||||++..... .+.+.+|+++++++ +||||+++++++..++..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~ 84 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL 84 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence 6789999999999999999986 5689999999875422 23578999999999 8999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC-----EEEeeccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR-----AKVSDFGL 777 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~-----~kl~DfGl 777 (973)
||+ +|+|.+++... ...+++.+++.++.||+.||+||| +.+|+||||||+|||++.++. +||+|||+
T Consensus 85 e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~ 156 (330)
T 2izr_A 85 ELL-GPSLEDLFDLC----DRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFAL 156 (330)
T ss_dssp ECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTT
T ss_pred EeC-CCCHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEccc
Confidence 999 99999999753 256899999999999999999999 789999999999999998887 99999999
Q ss_pred cccCCCCCcc------eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh
Q 041143 778 VKLAPDGEKS------VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK 851 (973)
Q Consensus 778 a~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 851 (973)
++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.......+....
T Consensus 157 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~ 236 (330)
T 2izr_A 157 AKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTK 236 (330)
T ss_dssp CEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHH
T ss_pred ceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhh
Confidence 9865433221 1245689999999999999999999999999999999999999998765433222222111110
Q ss_pred hchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCCCccc
Q 041143 852 SSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDESECC 920 (973)
Q Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~~~~ 920 (973)
. ....... .. ... .+.+++..|++.||.+||++.+|++.|+.+.++.....+....+
T Consensus 237 ~-------~~~~~~~-~~---~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw 293 (330)
T 2izr_A 237 R-------ATPIEVL-CE---NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDW 293 (330)
T ss_dssp H-------HSCHHHH-TT---TCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCCSCCCTT
T ss_pred c-------cCCHHHH-hc---cCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCccC
Confidence 0 0000000 00 011 58899999999999999999999999999988765544443333
No 42
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2e-40 Score=365.02 Aligned_cols=274 Identities=22% Similarity=0.341 Sum_probs=207.7
Q ss_pred HhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
..++|+..+.||+|+||.||+|+..+|+.||||+++.........+.+.+|++++++++||||+++++++.+++..++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 34789999999999999999999988999999999765444445678899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||++ |+|.+++.. ....+++.++..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 99 e~~~-~~l~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 170 (311)
T 3niz_A 99 EFME-KDLKKVLDE----NKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFG 170 (311)
T ss_dssp ECCS-EEHHHHHHT----CTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred cCCC-CCHHHHHHh----ccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence 9997 588888754 2245899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch-hH----
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK-EK---- 856 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~---- 856 (973)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.. ........... ..
T Consensus 171 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 247 (311)
T 3niz_A 171 IPVR-SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQL--PKIFSILGTPNPREWPQV 247 (311)
T ss_dssp SCCC----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHH--HHHHHHHCCCCTTTSGGG
T ss_pred CCcc-cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHH--HHHHHHHCCCChHHhhhh
Confidence 3322 2344578999999999876 56899999999999999999999999876543321 11111110000 00
Q ss_pred --HHhhcCccccC-CcccH-----HHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 857 --FKAAIDPALEV-NEETF-----ESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 857 --~~~~~~~~l~~-~~~~~-----~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.....+..... ..... .....+.+++.+|++.||++|||++|+++ +++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~f~~ 306 (311)
T 3niz_A 248 QELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN--HPYFKD 306 (311)
T ss_dssp TTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT--SGGGTT
T ss_pred hccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc--Cccccc
Confidence 00000000000 00011 11235789999999999999999999998 666554
No 43
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-40 Score=379.24 Aligned_cols=289 Identities=24% Similarity=0.366 Sum_probs=210.0
Q ss_pred HHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCC--
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGN-- 696 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~-- 696 (973)
+...++|...+.||+|+||.||+|.+. +|+.||||++..........+.+.+|+.++.++. ||||+++++++...+
T Consensus 5 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~ 84 (388)
T 3oz6_A 5 RHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDR 84 (388)
T ss_dssp HHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSS
T ss_pred CcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCC
Confidence 456789999999999999999999864 6899999999766556677788899999999997 999999999998654
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..|+||||++ |+|..++.. ..+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||
T Consensus 85 ~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG 154 (388)
T 3oz6_A 85 DVYLVFDYME-TDLHAVIRA------NILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFG 154 (388)
T ss_dssp CEEEEEECCS-EEHHHHHHH------TCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecccC-cCHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCc
Confidence 6899999996 699988865 46899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCC--------------------CcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCC
Q 041143 777 LVKLAPDG--------------------EKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEE 835 (973)
Q Consensus 777 la~~~~~~--------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~ 835 (973)
+|+..... .....+..+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.
T Consensus 155 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 155 LSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp TCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred ccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 99854321 1122345689999999999886 67899999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHhhc-hhHHHhhcCc----------------cccCCcccH-------------HHHHHHHHHHHHh
Q 041143 836 RPEESRYLAEWFWRIKSS-KEKFKAAIDP----------------ALEVNEETF-------------ESISIVAELAGHC 885 (973)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------~l~~~~~~~-------------~~~~~~~~l~~~c 885 (973)
...+.... .+...... .+.+...-.+ ......... .....+.+|+.+|
T Consensus 235 ~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~ 312 (388)
T 3oz6_A 235 STMNQLER--IIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKL 312 (388)
T ss_dssp SHHHHHHH--HHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHH--HHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHh
Confidence 64332111 11100000 0000000000 000000000 1123578999999
Q ss_pred hccCCCCCCCHhHHHHHHHHhhhhcCCCCCCCcccCCC
Q 041143 886 TAREPYHRPDMGHVVNVLSPLVEKWRPITDESECCSGI 923 (973)
Q Consensus 886 l~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~~~~~~~ 923 (973)
|+.||++|||+.|+++ ++++..+....+++.+...+
T Consensus 313 L~~dP~~R~t~~e~l~--Hp~~~~~~~~~~~~~~~~~~ 348 (388)
T 3oz6_A 313 LQFNPNKRISANDALK--HPFVSIFHNPNEEPNCDHII 348 (388)
T ss_dssp CCSSGGGSCCHHHHTT--STTTTTTCCGGGCCCCSSCC
T ss_pred hccCcccCCCHHHHhC--CHHHHHhcCCccCCCCCCCC
Confidence 9999999999999999 88887776666555444433
No 44
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=2.4e-40 Score=363.50 Aligned_cols=263 Identities=28% Similarity=0.469 Sum_probs=207.9
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
++|...+.||+|+||.||+|+.. ..+|||+++.........+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~ 112 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW 112 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEec
Confidence 57888999999999999999875 36999998876666777788999999999999999999999865 4568999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC-
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD- 783 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~- 783 (973)
+++|+|.+++.. ....+++.+++.|+.||+.||+||| +.+|+||||||+|||+++++.+||+|||+++....
T Consensus 113 ~~~~~L~~~l~~----~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 113 CEGSSLYKHLHV----QETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CSSCBHHHHHHT----SCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred CCCCcHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 999999999964 2356899999999999999999999 78999999999999999999999999999985432
Q ss_pred CCcceecccccccCcccccccc---cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAV---MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..........||+.|+|||++. ...++.++|||||||++|||++|+.||......+.. ...+. ...
T Consensus 186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--~~~~~---------~~~ 254 (307)
T 3lb7_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI--IFMVG---------RGY 254 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH--HHHHH---------HTC
T ss_pred cccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHH--HHHHh---------cCC
Confidence 1222334567999999999986 567889999999999999999999999866543221 11000 111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
..+.+. .........+.+++.+|++.||++||++.||++.|+.+...+
T Consensus 255 ~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 255 ASPDLS--KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CCCCST--TSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred CCcchh--hhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 122111 001112245789999999999999999999999999887654
No 45
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=6.4e-41 Score=364.08 Aligned_cols=258 Identities=26% Similarity=0.414 Sum_probs=210.9
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|+..++..||||+++..... .+++.+|++++++++||||+++++++.+.+..++|||
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 99 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS---EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE 99 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC---HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence 3678899999999999999999998889999999765333 3568899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++... ...+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 100 YMANGCLLNYLREM----RHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp CCTTCBHHHHHHCG----GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred ccCCCcHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 99999999999652 245899999999999999999999 78999999999999999999999999999986654
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
..........||+.|+|||++.+..++.++||||||+++|||++ |+.||......+... .+ .....
T Consensus 173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~------~~-------~~~~~ 239 (283)
T 3gen_A 173 DEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAE------HI-------AQGLR 239 (283)
T ss_dssp HHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH------HH-------HTTCC
T ss_pred cccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHH------HH-------hcccC
Confidence 33333334467889999999998999999999999999999998 999998765432211 11 11111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.... . .....+.+++.+|++.||++||++.|+++.|+.+.++
T Consensus 240 ~~~~-~----~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 240 LYRP-H----LASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp CCCC-T----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCC-C----cCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 1111 0 1124578999999999999999999999999988764
No 46
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=4.5e-41 Score=389.95 Aligned_cols=259 Identities=26% Similarity=0.437 Sum_probs=212.0
Q ss_pred HhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
..++|...+.||+|+||.||+|.+.++..||||+++... ...+.|.+|++++++++|||||++++++. .+..++||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~ 261 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS---MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIIT 261 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS---BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC---ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEE
Confidence 346788899999999999999999888999999997643 23568999999999999999999999986 56789999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.++++.... ..+++..++.++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 262 e~~~~g~L~~~l~~~~~---~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~ 335 (454)
T 1qcf_A 262 EFMAKGSLLDFLKSDEG---SKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIE 335 (454)
T ss_dssp CCCTTCBHHHHHHSHHH---HTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBC
T ss_pred eecCCCcHHHHHHhccC---CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcC
Confidence 99999999999975322 35789999999999999999999 7899999999999999999999999999998664
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
...........+|..|+|||++....++.++|||||||++|||++ |+.||......+.. . .+. ...
T Consensus 336 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~---~---~i~-------~~~ 402 (454)
T 1qcf_A 336 DNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVI---R---ALE-------RGY 402 (454)
T ss_dssp CHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH---H---HHH-------HTC
T ss_pred CCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHH---H---HHH-------cCC
Confidence 432222233457789999999998999999999999999999999 99999876543221 1 111 111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.... +......+.+++.+|++.||++||++.+|++.|+.+...
T Consensus 403 ~~~~-----~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 403 RMPR-----PENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp CCCC-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred CCCC-----CCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 1100 111234578999999999999999999999999988654
No 47
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-41 Score=378.30 Aligned_cols=264 Identities=26% Similarity=0.384 Sum_probs=212.0
Q ss_pred hcCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
.++|...+.||+|+||.||+|++. +++.||||+++.. ........+.+|+.++++++|||||++++++.....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~ 148 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 148 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccc-cChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC
Confidence 367889999999999999999853 4678999998753 345566789999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC---CEEE
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKL--QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY---RAKV 772 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~---~~kl 772 (973)
.++||||+++|+|.+++...... ....+++.+++.++.||++||+||| +++|+||||||+|||++.++ .+||
T Consensus 149 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 149 RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp CEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred CEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEE
Confidence 99999999999999999764321 2245899999999999999999999 88999999999999999554 5999
Q ss_pred eeccccccCCC-CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHH
Q 041143 773 SDFGLVKLAPD-GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 773 ~DfGla~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+|||+++.... ..........||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. ..+
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~------~~i 299 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVL------EFV 299 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH------HHH
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH------HHH
Confidence 99999974321 11122234568999999999999999999999999999999998 99999876543211 111
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. ...... .......+.+++.+||+.||++||++.+|++.|+.+.+.
T Consensus 300 ~~-------~~~~~~-----~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 300 TS-------GGRMDP-----PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp HT-------TCCCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred Hc-------CCCCCC-----CccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 11 000111 111223578999999999999999999999999988764
No 48
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.2e-39 Score=356.96 Aligned_cols=270 Identities=17% Similarity=0.229 Sum_probs=215.5
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|.. .+|+.||||++..... .+.+.+|+++++++ +|+|++++++++.+....++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv 84 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV 84 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence 36799999999999999999986 5689999999865422 23578899999999 799999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC-----EEEeecc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR-----AKVSDFG 776 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~-----~kl~DfG 776 (973)
|||+ +|+|.+++... ...+++.++..++.||+.||+||| +++|+||||||+||+++.++. +||+|||
T Consensus 85 ~e~~-~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg 156 (298)
T 1csn_A 85 IDLL-GPSLEDLLDLC----GRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFG 156 (298)
T ss_dssp EECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCT
T ss_pred EEec-CCCHHHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECc
Confidence 9999 99999999752 245899999999999999999999 889999999999999987776 9999999
Q ss_pred ccccCCCCCc------ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 777 LVKLAPDGEK------SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 777 la~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 236 (298)
T 1csn_A 157 MVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEK 236 (298)
T ss_dssp TCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHH
T ss_pred cccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhh
Confidence 9986544322 1234567999999999999999999999999999999999999999875533222222111111
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCC
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDE 916 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~ 916 (973)
.. ....... .+ .....+.+++.+|++.||++||++++|++.|+.+.++.....+.
T Consensus 237 ~~-~~~~~~~-~~---------~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~~~ 291 (298)
T 1csn_A 237 KQ-STPLREL-CA---------GFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDE 291 (298)
T ss_dssp HH-HSCHHHH-TT---------TSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCSCS
T ss_pred cc-CccHHHH-Hh---------hCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 10 0000110 01 11245789999999999999999999999999999876654443
No 49
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.7e-40 Score=368.48 Aligned_cols=253 Identities=26% Similarity=0.345 Sum_probs=206.7
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|+..+.||+|+||.||+|+.. +|+.||+|+++.... .....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 67999999999999999999875 689999999864311 1223457889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|..++.. ...+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 85 E~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 156 (337)
T 1o6l_A 85 EYANGGELFFHLSR-----ERVFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI 156 (337)
T ss_dssp ECCTTCBHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred eCCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcc
Confidence 99999999999865 246899999999999999999999 7899999999999999999999999999998543
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...+...
T Consensus 157 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~------~~~i~~~--------- 220 (337)
T 1o6l_A 157 SDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL------FELILME--------- 220 (337)
T ss_dssp CTT-CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC---------
T ss_pred cCC-CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHH------HHHHHcC---------
Confidence 322 223456899999999999999999999999999999999999999987653221 1111111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHHHHHHhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVNVLSPLV 907 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~~L~~~~ 907 (973)
.+.... .....+.+++.+|++.||++|| ++.||++ +++.
T Consensus 221 -~~~~p~---~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~--h~~f 264 (337)
T 1o6l_A 221 -EIRFPR---TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME--HRFF 264 (337)
T ss_dssp -CCCCCT---TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT--SGGG
T ss_pred -CCCCCC---CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc--CCCc
Confidence 111000 1123477999999999999999 8999887 4443
No 50
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1e-40 Score=373.30 Aligned_cols=268 Identities=28% Similarity=0.436 Sum_probs=214.2
Q ss_pred HHhcCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG 695 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 695 (973)
...++|...+.||+|+||.||+|+.. +++.||||+++.. ......+.+.+|++++++++||||+++++++.+.
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE-ASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc-cCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 34578999999999999999999874 3478999999764 2455667899999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhc-------------------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeecc
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKL-------------------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRD 756 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~D 756 (973)
+..++||||+++|+|.+++...... ....+++.+++.++.||++||+||| +++|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence 9999999999999999999763211 1256899999999999999999999 78999999
Q ss_pred CCCCcEEECCCCCEEEeeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCC
Q 041143 757 LKSSNILLDDDYRAKVSDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDE 834 (973)
Q Consensus 757 ikp~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~ 834 (973)
|||+||+++.++.+||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 99999999999999999999997543221 122334568999999999999999999999999999999999 9999987
Q ss_pred CChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 835 ERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
....+.. ..+... ..+... ......+.+++.+|++.||++||++.+|++.|+++.+++.
T Consensus 280 ~~~~~~~------~~~~~~-------~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 280 MAHEEVI------YYVRDG-------NILACP-----ENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp SCHHHHH------HHHHTT-------CCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred CChHHHH------HHHhCC-------CcCCCC-----CCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 6533211 111110 000111 1122457899999999999999999999999999987654
No 51
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.5e-40 Score=370.44 Aligned_cols=258 Identities=25% Similarity=0.383 Sum_probs=209.6
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
+.++|...+.||+|+||.||+|+.. +|+.||||+++...... ...+.+.+|+.++++++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 3468999999999999999999875 68999999997643221 134678999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC----CEEEe
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY----RAKVS 773 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~----~~kl~ 773 (973)
.++||||+++|+|.+++.. ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~gg~L~~~l~~-----~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~ 161 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQ-----KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (361)
T ss_dssp EEEEEECCCSCBHHHHHTT-----CSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEE
Confidence 9999999999999999854 256899999999999999999999 78999999999999998877 79999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+..
T Consensus 162 DFG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~------~~~i~~- 232 (361)
T 2yab_A 162 DFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET------LANITA- 232 (361)
T ss_dssp CCSSCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHT-
T ss_pred ecCCceEcCCCC--ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHh-
Confidence 999998665432 23456799999999999998999999999999999999999999987653221 111111
Q ss_pred hhHHHhhcCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 854 KEKFKAAIDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
......... ......+.+++.+|+..||++||++.|+++ ++++.
T Consensus 233 ---------~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~--hp~~~ 277 (361)
T 2yab_A 233 ---------VSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR--HPWIT 277 (361)
T ss_dssp ---------TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT--STTTS
T ss_pred ---------cCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc--CcCcC
Confidence 111111000 011234779999999999999999999987 55543
No 52
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=4.5e-41 Score=378.74 Aligned_cols=274 Identities=25% Similarity=0.373 Sum_probs=217.3
Q ss_pred cHHHHHHHhcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeee
Q 041143 616 SVQVLRKVTQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSL 688 (973)
Q Consensus 616 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 688 (973)
.....+...++|...+.||+|+||.||+|++ .+++.||||+++.. ......+.+.+|++++.++ +|||||++
T Consensus 13 ~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 13 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc-CCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 3444555678999999999999999999974 24678999999764 3445567899999999999 79999999
Q ss_pred eeEEEeCCe-EEEEEEecCCCCHHHHHHhhhhcc----------------------------------------------
Q 041143 689 LGYSIEGNE-RLLVYEYMPHGALSRHLFRWEKLQ---------------------------------------------- 721 (973)
Q Consensus 689 ~~~~~~~~~-~~lV~e~~~~g~L~~~l~~~~~~~---------------------------------------------- 721 (973)
++++.+.+. .++||||+++|+|.++++......
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 999988654 899999999999999997643210
Q ss_pred ---------------CCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCC-
Q 041143 722 ---------------LKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGE- 785 (973)
Q Consensus 722 ---------------~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~- 785 (973)
...+++..++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 122899999999999999999999 7899999999999999999999999999998554332
Q ss_pred cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCcc
Q 041143 786 KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPA 864 (973)
Q Consensus 786 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (973)
........||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. .. . +.......
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~--~~---~-------~~~~~~~~ 316 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--CR---R-------LKEGTRMR 316 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH--HH---H-------HHHTCCCC
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH--HH---H-------HHcCCCCC
Confidence 233445678999999999999999999999999999999998 99999876533211 10 0 01111111
Q ss_pred ccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 865 LEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 865 l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.. . .....+.+++.+|++.||++||++.||++.|+.+.+..
T Consensus 317 ~~-~----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 317 AP-D----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp CC-T----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred CC-C----CCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 11 1 11234789999999999999999999999999988753
No 53
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=375.66 Aligned_cols=266 Identities=28% Similarity=0.385 Sum_probs=216.6
Q ss_pred hcCccccCcccccCccEEEEEEEC--------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEe
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE--------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIE 694 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 694 (973)
.++|...+.||+|+||.||+|+.. .+..||||+++.. ......+.+.+|+++++++ +|||||++++++..
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD-ATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc-cCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 468889999999999999999762 2457999999765 3456667899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhc-----------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKL-----------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNIL 763 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nil 763 (973)
.+..++||||+++|+|.+++...... ....+++.+++.++.||+.||+||| +.+|+||||||+|||
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEE
Confidence 99999999999999999999764321 1245899999999999999999999 789999999999999
Q ss_pred ECCCCCEEEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHH
Q 041143 764 LDDDYRAKVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESR 841 (973)
Q Consensus 764 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~ 841 (973)
++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~- 302 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEEL- 302 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH-
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHH-
Confidence 99999999999999986543322 22344568899999999999999999999999999999999 9999987653321
Q ss_pred HHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 842 YLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
. ..+.. ....... ......+.+++.+|++.||++||++.||++.|+++.....
T Consensus 303 --~---~~~~~-------~~~~~~~-----~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 303 --F---KLLKE-------GHRMDKP-----SNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp --H---HHHHT-------TCCCCCC-----SSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred --H---HHHHc-------CCCCCCC-----ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 1 11111 1111111 1122457899999999999999999999999999987543
No 54
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=8.7e-41 Score=391.21 Aligned_cols=258 Identities=26% Similarity=0.435 Sum_probs=213.2
Q ss_pred hcCccccCcccccCccEEEEEEECC-CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED-GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|.+.. +..||||+++.... ..++|.+|+++|++++|||||+++++|...+..++||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~ 295 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM---EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 295 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc---chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence 3578888999999999999998874 88999999976422 3567999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ....+++..++.|+.||++||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 296 E~~~~g~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 296 EFMTYGNLLDYLREC---NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp ECCTTCBHHHHHHHS---CTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred EccCCCCHHHHHHhc---CcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceecc
Confidence 999999999999753 2356899999999999999999999 7899999999999999999999999999998765
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
...........++..|+|||++....++.++|||||||++|||++ |+.||......+.. ..+ ....
T Consensus 370 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~---~~~----------~~~~ 436 (495)
T 1opk_A 370 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY---ELL----------EKDY 436 (495)
T ss_dssp TCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH---HHH----------HTTC
T ss_pred CCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHH---HHH----------HcCC
Confidence 443333344557789999999999999999999999999999999 99999876543221 111 1111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.... +......+.+|+.+||+.||++||++.+|++.|+.+.+
T Consensus 437 ~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 437 RMER-----PEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp CCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred CCCC-----CCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 1111 11123457899999999999999999999999988754
No 55
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.7e-41 Score=368.34 Aligned_cols=272 Identities=25% Similarity=0.417 Sum_probs=207.3
Q ss_pred hcCccccCcccccCccEEEEEEE-----CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC--C
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-----EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG--N 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~ 696 (973)
.++|+..+.||+|+||.||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++... .
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 86 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRR 86 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHT
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC--CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence 36888999999999999999984 36889999998754 556667899999999999999999999998653 5
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..++||||+++|+|.+++... ...+++.+++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg 159 (295)
T 3ugc_A 87 NLKLIMEYLPYGSLRDYLQKH----KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFG 159 (295)
T ss_dssp SCEEEEECCTTCBHHHHHHHC----GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCC
T ss_pred ceEEEEEeCCCCCHHHHHHhc----ccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCc
Confidence 589999999999999999762 235899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCc--ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc-
Q 041143 777 LVKLAPDGEK--SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS- 853 (973)
Q Consensus 777 la~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~- 853 (973)
+++....... .......|+..|+|||++.+..++.++|||||||++|||++|..|+......... +.......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~----~~~~~~~~~ 235 (295)
T 3ugc_A 160 LTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMR----MIGNDKQGQ 235 (295)
T ss_dssp SCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHH----HHCTTCCTH
T ss_pred ccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHh----hhcCccccc
Confidence 9986543322 1223345788899999999999999999999999999999999998643211100 00000000
Q ss_pred --hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 854 --KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 854 --~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.....+.+..... ..........+.+++.+|++.||++||++.||++.|+.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~ 292 (295)
T 3ugc_A 236 MIVFHLIELLKNNGR-LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 292 (295)
T ss_dssp HHHHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhccCc-CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 0000011111100 011112234588999999999999999999999999998764
No 56
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=2.9e-40 Score=371.11 Aligned_cols=260 Identities=24% Similarity=0.365 Sum_probs=212.3
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
...++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++++++|||||++++++.+.+..++
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~l 105 (362)
T 2bdw_A 26 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL 105 (362)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred CcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence 34578999999999999999999875 68999999998765566677889999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC---CCEEEeeccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD---YRAKVSDFGL 777 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~---~~~kl~DfGl 777 (973)
||||+++|+|.+++.. ...+++.++..++.||++||+||| +++|+||||||+|||++.+ +.+||+|||+
T Consensus 106 v~e~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~ 177 (362)
T 2bdw_A 106 VFDLVTGGELFEDIVA-----REFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGL 177 (362)
T ss_dssp EECCCCSCBHHHHHTT-----CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEecCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCc
Confidence 9999999999998864 246899999999999999999999 7899999999999999865 4599999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+....
T Consensus 178 a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~------~~~i~~~~--- 246 (362)
T 2bdw_A 178 AIEVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRL------YAQIKAGA--- 246 (362)
T ss_dssp CBCCTTCC--SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTC---
T ss_pred ceEecCCc--ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhCC---
Confidence 98665432 23456899999999999998999999999999999999999999987653221 11111110
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.+. . ..........+.+++.+|++.||++||++.|+++ ++++.
T Consensus 247 ---~~~--~-~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~~~ 289 (362)
T 2bdw_A 247 ---YDY--P-SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK--VPWIC 289 (362)
T ss_dssp ---CCC--C-TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT--SHHHH
T ss_pred ---CCC--C-cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc--CcccC
Confidence 000 0 0000112245779999999999999999999997 55543
No 57
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=378.66 Aligned_cols=261 Identities=21% Similarity=0.313 Sum_probs=211.4
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
...++|...+.||+|+||.||+|... +|+.||+|++..........+.+.+|++++++++|||||++++++.+.+..++
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 45678999999999999999999764 68999999998765555667789999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC---CCCCEEEeeccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD---DDYRAKVSDFGL 777 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~---~~~~~kl~DfGl 777 (973)
||||+++|+|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+|||++ .++.+||+|||+
T Consensus 88 v~E~~~gg~L~~~i~~-----~~~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~ 159 (444)
T 3soa_A 88 IFDLVTGGELFEDIVA-----REYYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGL 159 (444)
T ss_dssp EECCCBCCBHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSS
T ss_pred EEEeCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCce
Confidence 9999999999999865 256899999999999999999999 78999999999999998 467899999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ...+......
T Consensus 160 a~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~------~~~i~~~~~~- 231 (444)
T 3soa_A 160 AIEVEGEQ-QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRL------YQQIKAGAYD- 231 (444)
T ss_dssp CBCCCTTC-CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHHHHHTCCC-
T ss_pred eEEecCCC-ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHH------HHHHHhCCCC-
Confidence 98655432 223456899999999999998999999999999999999999999987653221 1111111000
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+.. ......+.+++.+|++.||++||++.|+++ ++++.
T Consensus 232 --~~~~~~------~~~s~~~~~li~~~L~~dP~~Rpta~e~L~--hp~~~ 272 (444)
T 3soa_A 232 --FPSPEW------DTVTPEAKDLINKMLTINPSKRITAAEALK--HPWIS 272 (444)
T ss_dssp --CCTTTT------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH--SCTTH
T ss_pred --CCcccc------ccCCHHHHHHHHHHcCCChhHCCCHHHHhc--Ccccc
Confidence 000110 011245779999999999999999999998 55544
No 58
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.7e-40 Score=366.54 Aligned_cols=264 Identities=28% Similarity=0.409 Sum_probs=215.4
Q ss_pred hcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
.++|...+.||+|+||.||+|.. .+++.||||+++.. ......+.+.+|++++++++||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN-ASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT-CCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC-CCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 46888999999999999999976 24578999999754 345666789999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhc-------------------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCC
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKL-------------------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLK 758 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~-------------------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dik 758 (973)
.++||||+++|+|.+++...... ....+++.+++.++.||++||+||| +++|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccc
Confidence 99999999999999999764321 1234899999999999999999999 7899999999
Q ss_pred CCcEEECCCCCEEEeeccccccCCCCCcc-eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCC
Q 041143 759 SSNILLDDDYRAKVSDFGLVKLAPDGEKS-VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEER 836 (973)
Q Consensus 759 p~Nill~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~ 836 (973)
|+||+++.++.+||+|||+++........ ......+|+.|+|||.+.+..++.++|||||||++|||++ |+.||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999865443222 2234467889999999999999999999999999999999 999998765
Q ss_pred hhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 837 PEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... +. ....+... ......+.+++.+|++.||++||++.||++.|+++.++
T Consensus 258 ~~~~~~~------~~-------~~~~~~~~-----~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 258 PERLFNL------LK-------TGHRMERP-----DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GGGHHHH------HH-------TTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHH------hh-------cCCcCCCC-----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 4332111 11 00111111 11224578999999999999999999999999998775
No 59
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.5e-40 Score=362.88 Aligned_cols=265 Identities=22% Similarity=0.383 Sum_probs=204.3
Q ss_pred HhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHh--cCCCceeeeeeEEEeC----C
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSK--VRHRHLVSLLGYSIEG----N 696 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~ 696 (973)
..++|...+.||+|+||.||+|+. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++... .
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR-----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG-----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc-----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 357899999999999999999988 5899999998542 23456677777776 7999999999997653 4
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc-----cCCeeeccCCCCcEEECCCCCEE
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA-----RQTFIHRDLKSSNILLDDDYRAK 771 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~-----~~~ivH~Dikp~Nill~~~~~~k 771 (973)
..++||||+++|+|.++++. ..+++..++.++.||+.||+|||... +++|+||||||+|||++.++.+|
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~k 153 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQL------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCC 153 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTT------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEE
T ss_pred eeEEehhhccCCCHHHHHhh------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEE
Confidence 57899999999999999953 46899999999999999999999322 67999999999999999999999
Q ss_pred EeeccccccCCCCCcce---ecccccccCcccccccccC------cCCCchhHHhHHHHHHHHHhC----------CCCC
Q 041143 772 VSDFGLVKLAPDGEKSV---VTRLAGTFGYLAPEYAVMG------KITTKADVFSYGVVLMELLTG----------LAAL 832 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p~ 832 (973)
|+|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +.||
T Consensus 154 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf 233 (301)
T 3q4u_A 154 IADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPF 233 (301)
T ss_dssp ECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccc
Confidence 99999998544332221 2335799999999999876 556799999999999999999 8888
Q ss_pred CCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 833 DEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
.......... .. ..... ......+.+............+.+++.+|++.||++|||+.||++.|+++
T Consensus 234 ~~~~~~~~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 234 YDVVPNDPSF-ED-MRKVV-----CVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TTTSCSSCCH-HH-HHHHH-----TTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cccCCCCcch-hh-hhHHH-----hccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 6543322111 00 01100 00111122221112334567789999999999999999999999999875
No 60
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-40 Score=365.20 Aligned_cols=256 Identities=20% Similarity=0.297 Sum_probs=210.5
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +++.||+|.++.. ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~---~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 80 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK---GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIF 80 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC---THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC---cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEE
Confidence 478999999999999999999875 5889999998643 344567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC--CCCEEEeecccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD--DYRAKVSDFGLVKL 780 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~--~~~~kl~DfGla~~ 780 (973)
||+++|+|.+++.. ....+++.++..++.||+.||+||| +++|+||||||+|||++. ++.+||+|||+++.
T Consensus 81 e~~~g~~L~~~l~~----~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~ 153 (321)
T 1tki_A 81 EFISGLDIFERINT----SAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQ 153 (321)
T ss_dssp CCCCCCBHHHHHTS----SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEE
T ss_pred EeCCCCCHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeE
Confidence 99999999999854 2246899999999999999999999 789999999999999987 78999999999987
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+..
T Consensus 154 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~------~~~i~~-------- 217 (321)
T 1tki_A 154 LKPGD--NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI------IENIMN-------- 217 (321)
T ss_dssp CCTTC--EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHH--------
T ss_pred CCCCC--ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHH------HHHHHc--------
Confidence 65433 23446799999999999988899999999999999999999999987653221 111111
Q ss_pred cCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
......... ......+.+++.+|++.||++|||+.|+++ ++++++
T Consensus 218 --~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~--hp~~~~ 263 (321)
T 1tki_A 218 --AEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ--HPWLKQ 263 (321)
T ss_dssp --TCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--SHHHHS
T ss_pred --CCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc--Chhhcc
Confidence 111100000 011245789999999999999999999999 777664
No 61
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.4e-40 Score=369.03 Aligned_cols=258 Identities=28% Similarity=0.406 Sum_probs=201.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCC----EEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGT----KIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
++|...+.||+|+||.||+|++. +++ +||+|.++.. ......+.+.+|+.++++++||||++++++|.+.. .+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREA-TSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccc-cCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 57889999999999999999864 344 3588877543 23344578999999999999999999999998754 78
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++..++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++
T Consensus 93 ~v~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~ 165 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREH----KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAK 165 (327)
T ss_dssp EEEECCTTCBHHHHHHHS----TTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred EEEEecCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCccee
Confidence 999999999999999752 256899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 780 LAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 780 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.....
T Consensus 166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~------------- 232 (327)
T 3poz_A 166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL------------- 232 (327)
T ss_dssp HHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH-------------
T ss_pred EccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHH-------------
Confidence 6543322 22334567889999999999999999999999999999999 99999876543321111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... ........+.+++.+|++.||++||++.||++.|+.+.+.
T Consensus 233 ~~~~~~~-----~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 233 EKGERLP-----QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HTTCCCC-----CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HcCCCCC-----CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 0000000 1111234578999999999999999999999999988653
No 62
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.4e-40 Score=385.38 Aligned_cols=260 Identities=30% Similarity=0.471 Sum_probs=206.9
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|.+.++..||||+++..... .+.|.+|++++++++||||+++++++.+ +..++|||
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e 258 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 258 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC---HHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence 4678889999999999999999988888999999764322 4578999999999999999999999876 67899999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++.... ...+++.+++.++.||+.||+||| +++|+||||||+|||+++++.+||+|||+++....
T Consensus 259 ~~~~gsL~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~ 332 (452)
T 1fmk_A 259 YMSKGSLLDFLKGET---GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIED 332 (452)
T ss_dssp CCTTCBHHHHHSHHH---HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred hhcCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence 999999999996522 245899999999999999999999 78999999999999999999999999999986554
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
..........++..|+|||++....++.++|||||||++|||++ |+.||......+.. ..+.. ...
T Consensus 333 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~------~~i~~-------~~~ 399 (452)
T 1fmk_A 333 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL------DQVER-------GYR 399 (452)
T ss_dssp ----------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHH------HHHHT-------TCC
T ss_pred CceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHH------HHHHc-------CCC
Confidence 33333334567889999999999999999999999999999999 99999876543211 11111 011
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
... +......+.+++.+|++.||++||++.+|++.|+.+.....
T Consensus 400 ~~~-----~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~ 443 (452)
T 1fmk_A 400 MPC-----PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443 (452)
T ss_dssp CCC-----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred CCC-----CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence 111 11223457899999999999999999999999998876543
No 63
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.9e-40 Score=367.80 Aligned_cols=265 Identities=27% Similarity=0.426 Sum_probs=198.7
Q ss_pred hcCccccCcccccCccEEEEEEECCC----CEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE-
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDG----TKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER- 698 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g----~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 698 (973)
.++|...+.||+|+||.||+|++... ..||||+++.........+.+.+|++++++++||||+++++++......
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 46899999999999999999987543 2799999976654556678899999999999999999999999887655
Q ss_pred -----EEEEEecCCCCHHHHHHhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEE
Q 041143 699 -----LLVYEYMPHGALSRHLFRWEKL-QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKV 772 (973)
Q Consensus 699 -----~lV~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl 772 (973)
++||||+++|+|.+++...... ....+++.+++.++.||+.||+||| +++|+||||||+||++++++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEE
Confidence 9999999999999999764322 1225899999999999999999999 789999999999999999999999
Q ss_pred eeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHH
Q 041143 773 SDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 773 ~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+|||+++....... .......+++.|+|||.+.+..++.++|||||||++|||++ |+.||......+... .+
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~------~~ 252 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYN------YL 252 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH------HH
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHH------HH
Confidence 99999986543322 12233457889999999999999999999999999999999 999998765432211 11
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. ..... ........+.+++.+|++.||++||++.++++.|+++.+.
T Consensus 253 ~~-------~~~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 253 IG-------GNRLK-----QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp HT-------TCCCC-----CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hc-------CCCCC-----CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 10 00000 0111224578999999999999999999999999999875
No 64
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=2.4e-40 Score=359.18 Aligned_cols=259 Identities=23% Similarity=0.392 Sum_probs=199.7
Q ss_pred hcCccccCcccccCccEEEEEEECC----CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED----GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.++|...+.||+|+||.||+|.... +..||+|+++.. ......+.+.+|+.++++++||||+++++++. ++..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTT-TSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEecccc-CCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 4688999999999999999998743 457999998654 34556678999999999999999999999974 56789
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++.+++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++
T Consensus 92 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 164 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVR----KYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSR 164 (281)
T ss_dssp EEEECCTTEEHHHHHHHT----TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred EEEecCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECcccccc
Confidence 999999999999999652 246899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
..............+|+.|+|||++....++.++|||||||++|||++ |+.||......+.. . .+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~---~---~i~~------ 232 (281)
T 1mp8_A 165 YMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVI---G---RIEN------ 232 (281)
T ss_dssp --------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHH---H---HHHT------
T ss_pred ccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHH---H---HHHc------
Confidence 665443333344567889999999998999999999999999999997 99999876543221 1 1111
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.....+. ......+.+++.+|++.||++||++.|+++.|+.+.++
T Consensus 233 -~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 233 -GERLPMP-----PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp -TCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCC-----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0001111 11224577999999999999999999999999998764
No 65
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=2.7e-40 Score=370.32 Aligned_cols=261 Identities=20% Similarity=0.289 Sum_probs=207.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC---CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV---TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.++|+..+.||+|+||.||+|... +|+.||||++.... ......+.+.+|+++++.++||||+++++++.+.+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999875 68999999985321 11113467899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC---EEEeecc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR---AKVSDFG 776 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~---~kl~DfG 776 (973)
+||||+++|+|.+++..... ....+++..+..++.||++||+||| +++|+||||||+|||++.++. +||+|||
T Consensus 103 lv~e~~~g~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRAD-AGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEeCCCCCCHHHHHHHhcc-cCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence 99999999999988876332 2346899999999999999999999 789999999999999986654 9999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... .+. ..+...
T Consensus 179 ~a~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~---~~i~~~--- 247 (351)
T 3c0i_A 179 VAIQLGESG-LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE----RLF---EGIIKG--- 247 (351)
T ss_dssp TCEECCTTS-CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH----HHH---HHHHHT---
T ss_pred ceeEecCCC-eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH----HHH---HHHHcC---
Confidence 998665432 223456799999999999999999999999999999999999999976421 111 111110
Q ss_pred HHhhcCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 857 FKAAIDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
........ ......+.+++.+|++.||++||++.|+++ +++++
T Consensus 248 -------~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~--hp~~~ 291 (351)
T 3c0i_A 248 -------KYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN--HPWLK 291 (351)
T ss_dssp -------CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHH
T ss_pred -------CCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc--Chhhc
Confidence 01000000 011245789999999999999999999998 56654
No 66
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-40 Score=361.60 Aligned_cols=251 Identities=25% Similarity=0.303 Sum_probs=200.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|+..++||+|+||+||+|++. +|+.||||++............+..|+..+.++ +||||++++++|.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 368999999999999999999886 799999999876655566666677777777666 899999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+ +|+|.+++... ...++|..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 136 ~e~~-~~~L~~~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~ 207 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAW----GASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL 207 (311)
T ss_dssp EECC-CCBHHHHHHHH----CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred Eecc-CCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence 9999 78999988653 246999999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.... ......||++|+|||++.+ .++.++|||||||++|||++|..|+...... ..+.. ...
T Consensus 208 ~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~---------~~~~~------~~~ 269 (311)
T 3p1a_A 208 GTAG--AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGW---------QQLRQ------GYL 269 (311)
T ss_dssp C--------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHH---------HHHTT------TCC
T ss_pred ccCC--CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHH---------HHHhc------cCC
Confidence 4332 2344579999999998875 7999999999999999999997776532110 00110 001
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
.+.+. ......+.+++.+|++.||++||++.|+++ .+++
T Consensus 270 ~~~~~-----~~~~~~l~~li~~~L~~dP~~Rpt~~ell~--hp~~ 308 (311)
T 3p1a_A 270 PPEFT-----AGLSSELRSVLVMMLEPDPKLRATAEALLA--LPVL 308 (311)
T ss_dssp CHHHH-----TTSCHHHHHHHHHHSCSSTTTSCCHHHHHT--SGGG
T ss_pred Ccccc-----cCCCHHHHHHHHHHcCCChhhCcCHHHHHh--Cccc
Confidence 11111 112245789999999999999999999998 4444
No 67
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=372.05 Aligned_cols=256 Identities=24% Similarity=0.342 Sum_probs=203.2
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 699 (973)
..++|+..+.||+|+||.||+|+.. +|+.||||+++... ......+.+.+|.+++..+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3478999999999999999999875 58999999987531 1222345688999999988 6999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|..++... ..+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++
T Consensus 101 lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~ 172 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKS-----RRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCK 172 (353)
T ss_dssp EEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEcccccee
Confidence 999999999999999652 45899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
...... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+...
T Consensus 173 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~------~~~i~~~------ 239 (353)
T 3txo_A 173 EGICNG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDL------FEAILND------ 239 (353)
T ss_dssp CSCC----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC------
T ss_pred ecccCC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHH------HHHHHcC------
Confidence 543322 234456899999999999999999999999999999999999999987654321 1111111
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH------hHHHHHHHHhhh
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDM------GHVVNVLSPLVE 908 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~------~~v~~~L~~~~~ 908 (973)
...... .....+.+++.+|++.||++||++ .||++ +++.+
T Consensus 240 ----~~~~p~---~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~--hp~f~ 285 (353)
T 3txo_A 240 ----EVVYPT---WLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR--HPFFK 285 (353)
T ss_dssp ----CCCCCT---TSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT--SGGGT
T ss_pred ----CCCCCC---CCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh--CCccc
Confidence 111111 112347799999999999999998 67776 55544
No 68
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=7.3e-40 Score=357.43 Aligned_cols=275 Identities=20% Similarity=0.285 Sum_probs=208.5
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|+..+.||+|+||+||+|+.. +|+.||||+++.........+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999875 68999999998765556666788999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++ ++.+++... ...+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 82 ~~~~-~l~~~~~~~----~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 153 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC----NGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI 153 (292)
T ss_dssp CCSE-EHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCS
T ss_pred cCCC-CHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCC
Confidence 9965 666665431 256899999999999999999999 78999999999999999999999999999986543
Q ss_pred CCcceecccccccCcccccccccCc-CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch-hHH---H
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGK-ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK-EKF---K 858 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~---~ 858 (973)
.. .......||+.|+|||++.+.. ++.++|||||||++|||++|..|+........ .+........... ... .
T Consensus 154 ~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 231 (292)
T 3o0g_A 154 PV-RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD-QLKRIFRLLGTPTEEQWPSMT 231 (292)
T ss_dssp CC-SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHH-HHHHHHHHHCCCCTTTCTTGG
T ss_pred cc-ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHH-HHHHHHHHhCCCChhhhhhhc
Confidence 32 2234467899999999998765 89999999999999999999888654432211 1111111110000 000 0
Q ss_pred hhcCc--------cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 859 AAIDP--------ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 859 ~~~~~--------~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...+. ..............+.+++.+|++.||++|||++|+++ +++.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~f~~~~ 290 (292)
T 3o0g_A 232 KLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ--HPYFSDFC 290 (292)
T ss_dssp GSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGTTC-
T ss_pred ccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc--CcccccCC
Confidence 00000 00000001112345779999999999999999999998 66666543
No 69
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=4.5e-40 Score=371.51 Aligned_cols=256 Identities=22% Similarity=0.341 Sum_probs=201.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 700 (973)
.++|...++||+|+||.||+|+.+ +++.||||+++.... .....+.+.+|..++.++ +|||||++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 368999999999999999999876 578899999975422 233445688999999887 89999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+++|+|..++... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++.
T Consensus 131 V~E~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~ 202 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE 202 (396)
T ss_dssp EEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEcCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeee
Confidence 99999999999998752 46899999999999999999999 78999999999999999999999999999985
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHH---HHHHHHHHHhhchhHH
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESR---YLAEWFWRIKSSKEKF 857 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~ 857 (973)
..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+.. ........+
T Consensus 203 ~~~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i------- 274 (396)
T 4dc2_A 203 GLRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVI------- 274 (396)
T ss_dssp CCCTT-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHH-------
T ss_pred cccCC-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHH-------
Confidence 33222 2345578999999999999999999999999999999999999999754322110 000011111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH------hHHHH
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDM------GHVVN 901 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~------~~v~~ 901 (973)
....+.... .....+.+++.+||+.||++||++ .||++
T Consensus 275 ---~~~~~~~p~---~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~ 318 (396)
T 4dc2_A 275 ---LEKQIRIPR---SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG 318 (396)
T ss_dssp ---HHCCCCCCT---TSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHH
T ss_pred ---hccccCCCC---cCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhc
Confidence 111111111 112347799999999999999996 45655
No 70
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.9e-40 Score=366.95 Aligned_cols=259 Identities=24% Similarity=0.375 Sum_probs=205.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|+..+.||+|+||.||+|+.. +++.||||++.... .....+.+.+|+.+++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 84 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEccc-ccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 368999999999999999999876 78999999986542 2233467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 85 e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 156 (323)
T 3tki_A 85 EYCSGGELFDRIEP-----DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFR 156 (323)
T ss_dssp ECCTTEEGGGGSBT-----TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECE
T ss_pred EcCCCCcHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceec
Confidence 99999999988753 245899999999999999999999 7899999999999999999999999999998543
Q ss_pred CCC-cceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 783 DGE-KSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 783 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
... ........||+.|+|||++.+..+ +.++|||||||++|||++|+.||......... ...|. ... ..
T Consensus 157 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~-~~~~~----~~~----~~ 227 (323)
T 3tki_A 157 YNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE-YSDWK----EKK----TY 227 (323)
T ss_dssp ETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHH-HHHHH----TTC----TT
T ss_pred cCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHH-HHHHh----ccc----cc
Confidence 222 222345689999999999987776 77899999999999999999999865532211 11111 000 00
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+ .......+.+++.+|++.||++||++.|+++ .+++.+
T Consensus 228 ~~~-------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~--h~~~~~ 267 (323)
T 3tki_A 228 LNP-------WKKIDSAPLALLHKILVENPSARITIPDIKK--DRWYNK 267 (323)
T ss_dssp STT-------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT--CTTTTC
T ss_pred CCc-------cccCCHHHHHHHHHHccCChhhCcCHHHHhh--Chhhcc
Confidence 011 0112234679999999999999999999998 555543
No 71
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=6.5e-40 Score=369.53 Aligned_cols=279 Identities=15% Similarity=0.202 Sum_probs=210.9
Q ss_pred hcCccccCcccccCccEEEEEEECC------CCEEEEEEeecCCCChHH---------HHHHHHHHHHHHhcCCCceeee
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED------GTKIAVKRMEAGVTTTKA---------LDEFQSEIAVLSKVRHRHLVSL 688 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~------g~~vavK~~~~~~~~~~~---------~~~~~~E~~~l~~l~h~niv~l 688 (973)
.++|...+.||+|+||.||+|.+.. ++.||||++......... ...+..|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4689999999999999999998764 478999998754211100 0123345566777889999999
Q ss_pred eeEEEeC----CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE
Q 041143 689 LGYSIEG----NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL 764 (973)
Q Consensus 689 ~~~~~~~----~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill 764 (973)
++++... ...++||||+ +|+|.+++... ...+++.+++.|+.||+.||+||| +++|+||||||+|||+
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~----~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill 185 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEAN----AKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLL 185 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEE
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEE
Confidence 9998874 4479999999 99999999652 256999999999999999999999 7899999999999999
Q ss_pred C--CCCCEEEeeccccccCCCCCcc------eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCC
Q 041143 765 D--DDYRAKVSDFGLVKLAPDGEKS------VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEER 836 (973)
Q Consensus 765 ~--~~~~~kl~DfGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~ 836 (973)
+ .++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 186 ~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~ 265 (364)
T 3op5_A 186 NYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL 265 (364)
T ss_dssp ESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred ecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc
Confidence 9 8899999999999855432111 1133569999999999999999999999999999999999999998543
Q ss_pred hhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCC
Q 041143 837 PEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDE 916 (973)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~ 916 (973)
.... ...+..... ...+...+++.+.... ....+.+++..|++.||++||++.+|++.|+.+.+......+.
T Consensus 266 ~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~ 337 (364)
T 3op5_A 266 KDPK--YVRDSKIRY--RENIASLMDKCFPAAN----APGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDG 337 (364)
T ss_dssp TCHH--HHHHHHHHH--HHCHHHHHHHHSCTTC----CCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCHH--HHHHHHHHh--hhhHHHHHHHhccccc----CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcCC
Confidence 2221 111111111 1223333333332111 1245789999999999999999999999999999876655544
Q ss_pred Cc
Q 041143 917 SE 918 (973)
Q Consensus 917 ~~ 918 (973)
..
T Consensus 338 ~~ 339 (364)
T 3op5_A 338 KL 339 (364)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 72
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.3e-40 Score=378.21 Aligned_cols=266 Identities=21% Similarity=0.252 Sum_probs=211.9
Q ss_pred HHHHHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC
Q 041143 618 QVLRKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG 695 (973)
Q Consensus 618 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 695 (973)
..++...++|...+.||+|+||.||+|+.. +++.||+|+++.... .....+.+.+|+.+++.++|||||++++++.+.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 344455679999999999999999999876 588999999864210 011123478999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeec
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDF 775 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~Df 775 (973)
+..|+||||+++|+|.+++.. ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+||
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~------~~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DF 212 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSN------YDVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADF 212 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCC
T ss_pred CEEEEEEeCCCCCcHHHHHHc------CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEecc
Confidence 999999999999999999864 35889999999999999999999 789999999999999999999999999
Q ss_pred cccccCCCCCcceecccccccCcccccccccCc----CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh
Q 041143 776 GLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGK----ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK 851 (973)
Q Consensus 776 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 851 (973)
|+|+.............+||+.|+|||++.+.. ++.++|||||||++|||++|+.||......+. +..+.
T Consensus 213 G~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~------~~~i~ 286 (410)
T 3v8s_A 213 GTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGT------YSKIM 286 (410)
T ss_dssp TTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHH
T ss_pred ceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhH------HHHHH
Confidence 999876554444445678999999999997655 88999999999999999999999987654321 11111
Q ss_pred hchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCC--CCCHhHHHHHHHHhhhh
Q 041143 852 SSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYH--RPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~--RPs~~~v~~~L~~~~~~ 909 (973)
.... ...-+... .....+.+|+.+|++.+|.+ ||++.||++ +++.+.
T Consensus 287 ~~~~---~~~~p~~~------~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~--Hp~f~~ 335 (410)
T 3v8s_A 287 NHKN---SLTFPDDN------DISKEAKNLICAFLTDREVRLGRNGVEEIKR--HLFFKN 335 (410)
T ss_dssp THHH---HCCCCTTC------CCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT--SGGGCC
T ss_pred hccc---cccCCCcc------cccHHHHHHHHHHccChhhhCCCCCHHHHhc--CccccC
Confidence 1110 01111100 11234779999999999988 999999998 777653
No 73
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3e-40 Score=355.53 Aligned_cols=256 Identities=29% Similarity=0.450 Sum_probs=212.2
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
++|...+.||+|+||.||+|...+++.||+|+++..... .+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS---EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF 84 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC---HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence 578889999999999999999988899999999765332 35789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDG 784 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~ 784 (973)
+++|+|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 ~~~~~L~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 157 (267)
T 3t9t_A 85 MEHGCLSDYLRTQ----RGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD 157 (267)
T ss_dssp CTTCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH
T ss_pred CCCCcHHHHHhhC----cccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccc
Confidence 9999999999652 245899999999999999999999 789999999999999999999999999999865443
Q ss_pred CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 785 EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 785 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.........|+..|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+.. ....
T Consensus 158 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~------~~~i~~-------~~~~ 224 (267)
T 3t9t_A 158 QYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEV------VEDIST-------GFRL 224 (267)
T ss_dssp HHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH------HHHHHT-------TCCC
T ss_pred cccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHH------HHHHhc-------CCcC
Confidence 2222334567889999999998899999999999999999999 8999987653221 111111 1111
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
... ......+.+++.+|++.||++||++.++++.|+.+.+
T Consensus 225 ~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 225 YKP-----RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp CCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCC-----ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 111 0112457899999999999999999999999999876
No 74
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=367.60 Aligned_cols=257 Identities=26% Similarity=0.375 Sum_probs=203.8
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCC--CceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRH--RHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|...+++.||||++..........+.+.+|++++.+++| +||+++++++...+..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 5789999999999999999999889999999998766667777889999999999976 99999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
|| .+|+|.+++.. ...+++.++..++.||+.||+||| +++|+||||||+|||++ ++.+||+|||+++...
T Consensus 89 e~-~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~ 158 (343)
T 3dbq_A 89 EC-GNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 158 (343)
T ss_dssp CC-CSEEHHHHHHH-----SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-
T ss_pred eC-CCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccC
Confidence 94 58899999965 256899999999999999999999 78999999999999997 5789999999998654
Q ss_pred CCCcc-eecccccccCccccccccc-----------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 783 DGEKS-VVTRLAGTFGYLAPEYAVM-----------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 783 ~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 159 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---------- 228 (343)
T 3dbq_A 159 PDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS---------- 228 (343)
T ss_dssp -----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH----------
T ss_pred cccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHH----------
Confidence 43222 2345679999999999865 6788999999999999999999999976432211
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+...+++.... ..+......+.+++.+||+.||.+||++.|+++ +++++.
T Consensus 229 -----~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~--hp~~~~ 279 (343)
T 3dbq_A 229 -----KLHAIIDPNHEI-EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA--HPYVQI 279 (343)
T ss_dssp -----HHHHHHCTTSCC-CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHHS
T ss_pred -----HHHHHhcCCccc-CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh--Cccccc
Confidence 111222221110 000011235779999999999999999999998 666654
No 75
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=4.2e-40 Score=355.05 Aligned_cols=254 Identities=23% Similarity=0.341 Sum_probs=209.4
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC--CeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG--NERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lV~ 702 (973)
++|...+.||+|+||.||+|++. ++.||||+++.........+.+.+|++++++++||||+++++++.+. +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 67889999999999999999986 88999999987666667778899999999999999999999999887 7789999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||+++|+|.+++... ....+++.+++.++.||+.||+||| +++ |+||||||+||+++.++.++|+|||++..
T Consensus 89 e~~~~~~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~ 162 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEG---TNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFS 162 (271)
T ss_dssp ECCTTCBHHHHHHSC---SSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCT
T ss_pred cccCCCcHHHHHhhc---ccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceee
Confidence 999999999999752 2236899999999999999999999 677 99999999999999999999999998764
Q ss_pred CCCCCcceecccccccCcccccccccCcCCC---chhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITT---KADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
... ....||+.|+|||.+.+..++. ++|||||||++|||++|+.||......+.. ... .
T Consensus 163 ~~~------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------~~~------~ 224 (271)
T 3kmu_A 163 FQS------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIG------MKV------A 224 (271)
T ss_dssp TSC------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHH------HHH------H
T ss_pred ecc------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHH------HHH------H
Confidence 322 2346899999999998766555 799999999999999999999876543211 011 1
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.....+.+. ......+.+++.+|++.||++||++.|+++.|+.+.+
T Consensus 225 ~~~~~~~~~-----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 225 LEGLRPTIP-----PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HSCCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred hcCCCCCCC-----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 111111111 1122457899999999999999999999999998754
No 76
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3.9e-40 Score=363.51 Aligned_cols=265 Identities=26% Similarity=0.405 Sum_probs=214.8
Q ss_pred hcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCC
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 696 (973)
.++|...+.||+|+||.||+|++ .+++.||||+++.. ......+.+.+|+++++++ +||||+++++++...+
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS-AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc-hhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 46788999999999999999975 34678999999754 2345567899999999999 8999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhc-------------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEE
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKL-------------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNIL 763 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~-------------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nil 763 (973)
..++||||+++|+|.+++...... ....+++.+++.++.||+.||+||| +++|+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEE
Confidence 999999999999999999764321 1235899999999999999999999 789999999999999
Q ss_pred ECCCCCEEEeeccccccCCCCCcc-eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHH
Q 041143 764 LDDDYRAKVSDFGLVKLAPDGEKS-VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESR 841 (973)
Q Consensus 764 l~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~ 841 (973)
++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||++ |+.||........
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~- 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK- 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-
Confidence 999999999999999865543322 2334567889999999999999999999999999999999 9999976653221
Q ss_pred HHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 842 YLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
... . ......+... ......+.+++.+|++.||.+||++.||++.|+++.++
T Consensus 257 -~~~----~------~~~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 257 -FYK----M------IKEGFRMLSP-----EHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp -HHH----H------HHHTCCCCCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHH----H------hccCCCCCCc-----ccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 111 0 1111111111 11224578999999999999999999999999998875
No 77
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=3.6e-40 Score=359.13 Aligned_cols=259 Identities=27% Similarity=0.438 Sum_probs=216.4
Q ss_pred hcCccccCcccccCccEEEEEEECC-CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED-GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|.+.. +..||||+++.. ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED---TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC---STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 4678899999999999999998764 788999998753 334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 89 e~~~~~~L~~~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~ 162 (288)
T 3kfa_A 89 EFMTYGNLLDYLREC---NRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMT 162 (288)
T ss_dssp ECCTTEEHHHHHHHC---CTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSC
T ss_pred EcCCCCcHHHHHHhc---ccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceecc
Confidence 999999999999652 2356899999999999999999999 7799999999999999999999999999998766
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
...........+|+.|+|||++.+..++.++||||||+++|||++ |+.||........... +....
T Consensus 163 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~-------------~~~~~ 229 (288)
T 3kfa_A 163 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYEL-------------LEKDY 229 (288)
T ss_dssp SSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHH-------------HHTTC
T ss_pred CCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH-------------HhccC
Confidence 554444455667889999999999999999999999999999999 9999987654322110 11111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... ......+.+++.+|++.||++||++.||++.|+.+.++
T Consensus 230 ~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 230 RMERP-----EGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp CCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCC-----CCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 11111 11224578999999999999999999999999998775
No 78
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.1e-40 Score=381.69 Aligned_cols=270 Identities=21% Similarity=0.281 Sum_probs=213.8
Q ss_pred HHHHHHHhcCccccCcccccCccEEEEEEECC-CCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 617 VQVLRKVTQNFAQENELGRGGFGTVYKGELED-GTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 617 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
...++...++|+..++||+|+||+||+|+... ++.||||+++.... .....+.+.+|+.++..++|||||++++++.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 34445566899999999999999999998864 78899999864210 01112348899999999999999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEee
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSD 774 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~D 774 (973)
.+..++||||+++|+|.+++... ...+++..+..++.||+.||+||| +.+||||||||+|||++.++.+||+|
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~----~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~D 218 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKF----EDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLAD 218 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECC
T ss_pred CCEEEEEEecCCCCcHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcc
Confidence 99999999999999999999652 246899999999999999999999 78999999999999999999999999
Q ss_pred ccccccCCCCCcceecccccccCcccccccc-----cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV-----MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
||+|+.............+||+.|+|||++. ...++.++|||||||++|||++|+.||......+.. ..
T Consensus 219 FGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~------~~ 292 (437)
T 4aw2_A 219 FGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETY------GK 292 (437)
T ss_dssp CTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH------HH
T ss_pred hhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHH------Hh
Confidence 9999866555444455578999999999987 567999999999999999999999999876543221 11
Q ss_pred HhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCC--CCCHhHHHHHHHHhhhh
Q 041143 850 IKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYH--RPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~--RPs~~~v~~~L~~~~~~ 909 (973)
+..... ...-|... ......+.+++.+|+..+|++ ||++.||++ +++.+.
T Consensus 293 i~~~~~---~~~~p~~~-----~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~--Hpff~~ 344 (437)
T 4aw2_A 293 IMNHKE---RFQFPTQV-----TDVSENAKDLIRRLICSREHRLGQNGIEDFKK--HPFFSG 344 (437)
T ss_dssp HHTHHH---HCCCCSSC-----CCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT--SGGGTT
T ss_pred hhhccc---cccCCccc-----ccCCHHHHHHHHHHhcccccccCCCCHHHHhC--CCccCC
Confidence 111010 11111110 011234778999999888888 999999998 676653
No 79
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=360.72 Aligned_cols=259 Identities=23% Similarity=0.374 Sum_probs=208.6
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
..++|...+.||+|+||.||+|... +|+.||||+++...... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 88 (326)
T 2y0a_A 9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD 88 (326)
T ss_dssp HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence 3467999999999999999999875 58999999987543221 135678999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC----CEEEe
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY----RAKVS 773 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~----~~kl~ 773 (973)
.++||||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 89 ~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~ 160 (326)
T 2y0a_A 89 VILILELVAGGELFDFLAE-----KESLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKII 160 (326)
T ss_dssp EEEEEECCCSCBHHHHHTT-----SSCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEEC
T ss_pred EEEEEEcCCCCCHHHHHHh-----cCCcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEE
Confidence 9999999999999999854 256899999999999999999999 78999999999999999887 89999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.. ..+...
T Consensus 161 Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~------~~~~~~ 232 (326)
T 2y0a_A 161 DFGLAHKIDFGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETL------ANVSAV 232 (326)
T ss_dssp CCTTCEECCTTS--CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHH------HHHHHT
T ss_pred ECCCCeECCCCC--ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHH------HHHHhc
Confidence 999998664332 234467999999999999899999999999999999999999999876533211 111100
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..... ..........+.+++.+|++.||++|||+.|+++ +++++
T Consensus 233 --------~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~~~ 276 (326)
T 2y0a_A 233 --------NYEFE-DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ--HPWIK 276 (326)
T ss_dssp --------CCCCC-HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH--STTTS
T ss_pred --------CCCcC-ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc--CCCcc
Confidence 00000 0000011234779999999999999999999998 55543
No 80
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3.6e-40 Score=359.10 Aligned_cols=271 Identities=21% Similarity=0.321 Sum_probs=204.4
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
++|...+.||+|+||.||+|+..+|+.||||+++.........+.+.+|++++++++||||+++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57899999999999999999988899999999976533333346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDG 784 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~ 784 (973)
+++ +|.+++... ...+++.++..++.||++||+||| +++|+||||||+||+++.++.+||+|||+++.....
T Consensus 82 ~~~-~l~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 153 (288)
T 1ob3_A 82 LDQ-DLKKLLDVC----EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIP 153 (288)
T ss_dssp CSE-EHHHHHHTS----TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred cCC-CHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcc
Confidence 975 998888652 246899999999999999999999 789999999999999999999999999999865432
Q ss_pred CcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch-hH---HH-
Q 041143 785 EKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK-EK---FK- 858 (973)
Q Consensus 785 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~---~~- 858 (973)
. .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+. +........... .. ..
T Consensus 154 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 230 (288)
T 1ob3_A 154 V-RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ--LMRIFRILGTPNSKNWPNVTE 230 (288)
T ss_dssp ---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHCCCCTTTSTTGGG
T ss_pred c-cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHHCCCChhhchhhhc
Confidence 2 12334578999999999876 4589999999999999999999999987654322 111111110000 00 00
Q ss_pred -hhcCccccCC------cccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 859 -AAIDPALEVN------EETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 859 -~~~~~~l~~~------~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...++.+... .........+.+++.+|++.||++||++.|+++ +++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~f~ 285 (288)
T 1ob3_A 231 LPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE--HAYFK 285 (288)
T ss_dssp STTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT--SGGGG
T ss_pred ccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc--Ccchh
Confidence 0011111100 000112245779999999999999999999987 55543
No 81
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=2.1e-39 Score=369.00 Aligned_cols=276 Identities=18% Similarity=0.262 Sum_probs=211.4
Q ss_pred cCccccCccccc--CccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 625 QNFAQENELGRG--GFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G--~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
++|+..+.||+| +||.||+|+.. +|+.||||+++.........+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 104 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVV 104 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEE
Confidence 678999999999 99999999876 689999999987655667778899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++.... ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||.+...
T Consensus 105 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 105 TSFMAYGSAKDLICTHF---MDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp EECCTTCBHHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEccCCCCHHHHHhhhc---ccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 99999999999997532 245899999999999999999999 789999999999999999999999999998643
Q ss_pred CCCCc------ceecccccccCccccccccc--CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh-
Q 041143 782 PDGEK------SVVTRLAGTFGYLAPEYAVM--GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS- 852 (973)
Q Consensus 782 ~~~~~------~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~- 852 (973)
..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+... ........
T Consensus 179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~~~~~~~~~ 256 (389)
T 3gni_B 179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL--EKLNGTVPC 256 (389)
T ss_dssp EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH--HC-------
T ss_pred ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH--HHhcCCCCc
Confidence 22111 11223478999999999987 679999999999999999999999998654332110 00000000
Q ss_pred -------chh-------------HHHhhcC---c-----cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHH
Q 041143 853 -------SKE-------------KFKAAID---P-----ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLS 904 (973)
Q Consensus 853 -------~~~-------------~~~~~~~---~-----~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~ 904 (973)
... .....+. + ..............+.+|+.+||+.||++|||+.|+++ +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~--h 334 (389)
T 3gni_B 257 LLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN--H 334 (389)
T ss_dssp -------------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT--S
T ss_pred cccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc--C
Confidence 000 0000000 0 00000011112245889999999999999999999998 6
Q ss_pred Hhhhhc
Q 041143 905 PLVEKW 910 (973)
Q Consensus 905 ~~~~~~ 910 (973)
++++.+
T Consensus 335 p~f~~~ 340 (389)
T 3gni_B 335 SFFKQI 340 (389)
T ss_dssp GGGGGC
T ss_pred HHHHHH
Confidence 666654
No 82
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=9.8e-40 Score=363.44 Aligned_cols=253 Identities=25% Similarity=0.375 Sum_probs=200.3
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC-----
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN----- 696 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 696 (973)
..++|+..+.||+|+||.||+|+.. +|+.||||+++... .....+.+.+|++++++++|||||++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 82 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPN-RELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQ 82 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCS-TTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCC-chhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhh
Confidence 3468999999999999999999886 79999999997543 3445678999999999999999999999987643
Q ss_pred ----------------------------------------------------eEEEEEEecCCCCHHHHHHhhhhccCCC
Q 041143 697 ----------------------------------------------------ERLLVYEYMPHGALSRHLFRWEKLQLKP 724 (973)
Q Consensus 697 ----------------------------------------------------~~~lV~e~~~~g~L~~~l~~~~~~~~~~ 724 (973)
..++||||+++|+|.+++.... ....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~ 160 (332)
T 3qd2_B 83 EEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC--SLED 160 (332)
T ss_dssp HHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC--SGGG
T ss_pred hhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc--Cccc
Confidence 2799999999999999997633 2345
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCCc-----------ceecccc
Q 041143 725 LSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEK-----------SVVTRLA 793 (973)
Q Consensus 725 l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~-----------~~~~~~~ 793 (973)
.++..++.++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....... .......
T Consensus 161 ~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (332)
T 3qd2_B 161 REHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQV 237 (332)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccC
Confidence 678889999999999999999 78999999999999999999999999999986554321 1223457
Q ss_pred cccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHH
Q 041143 794 GTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFE 873 (973)
Q Consensus 794 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 873 (973)
||+.|+|||++.+..++.++|||||||++|||++|..|+. +.... .... . .. ........
T Consensus 238 gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-----~~~~~---~~~~-------~---~~--~~~~~~~~ 297 (332)
T 3qd2_B 238 GTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-----ERVRI---ITDV-------R---NL--KFPLLFTQ 297 (332)
T ss_dssp -CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-----HHHHH---HHHH-------H---TT--CCCHHHHH
T ss_pred CCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-----HHHHH---HHHh-------h---cc--CCCccccc
Confidence 9999999999999999999999999999999999866532 11110 0000 0 00 10111223
Q ss_pred HHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 874 SISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 874 ~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
....+.+++.+|++.||++||++.|+++
T Consensus 298 ~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 298 KYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred CChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 3345689999999999999999999997
No 83
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=8.5e-40 Score=360.14 Aligned_cols=251 Identities=27% Similarity=0.409 Sum_probs=206.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||+|+++.... .....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 67899999999999999999875 689999999864311 1123456889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 86 e~~~gg~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~ 157 (318)
T 1fot_A 86 DYIEGGELFSLLRK-----SQRFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP 157 (318)
T ss_dssp CCCCSCBHHHHHHH-----TSSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred eCCCCCCHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecC
Confidence 99999999999965 246899999999999999999999 8899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
.. ....+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+...
T Consensus 158 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~------~~~i~~~--------- 218 (318)
T 1fot_A 158 DV----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT------YEKILNA--------- 218 (318)
T ss_dssp SC----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHC---------
T ss_pred Cc----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHH------HHHHHhC---------
Confidence 32 2346899999999999999999999999999999999999999987653221 1111111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHHHHHHhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVNVLSPLVE 908 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~~L~~~~~ 908 (973)
.+.... .....+.+++.+|++.||++|| ++.||++ +++++
T Consensus 219 -~~~~p~---~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~--hp~f~ 263 (318)
T 1fot_A 219 -ELRFPP---FFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN--HPWFK 263 (318)
T ss_dssp -CCCCCT---TSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT--SGGGS
T ss_pred -CCCCCC---CCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc--Ccccc
Confidence 111111 1123577999999999999999 8888887 55554
No 84
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=8.3e-40 Score=354.51 Aligned_cols=259 Identities=27% Similarity=0.440 Sum_probs=212.4
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|...++..||||+++.... ..+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e 87 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM---SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITE 87 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS---CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc---cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEe
Confidence 367889999999999999999998888999999976432 2457899999999999999999999986 456899999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++.... ...+++.++..++.|++.||+||| +++|+||||||+||++++++.+||+|||+++....
T Consensus 88 ~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 161 (279)
T 1qpc_A 88 YMENGSLVDFLKTPS---GIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIED 161 (279)
T ss_dssp CCTTCBHHHHTTSHH---HHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred cCCCCCHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccC
Confidence 999999999986522 135899999999999999999999 78999999999999999999999999999987655
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
..........++..|+|||.+.+..++.++|||||||++|||++ |+.||......+. ...+.. ...
T Consensus 162 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~------~~~~~~-------~~~ 228 (279)
T 1qpc_A 162 NEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV------IQNLER-------GYR 228 (279)
T ss_dssp SCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH------HHHHHT-------TCC
T ss_pred cccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHH------HHHHhc-------ccC
Confidence 44333344567889999999998899999999999999999999 9999987653221 111111 111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.... ......+.+++.+|++.||++||++.++++.|+.+....
T Consensus 229 ~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 229 MVRP-----DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp CCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred CCCc-----ccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhc
Confidence 1111 112245789999999999999999999999999987753
No 85
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=360.78 Aligned_cols=250 Identities=26% Similarity=0.404 Sum_probs=196.2
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCC------------------------hHHHHHHHHHHHHHHh
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTT------------------------TKALDEFQSEIAVLSK 679 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~------------------------~~~~~~~~~E~~~l~~ 679 (973)
++|...+.||+|+||.||+|+.. +|+.||||++...... ....+.+.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 68999999999999999999875 6889999998654211 1123568999999999
Q ss_pred cCCCceeeeeeEEEe--CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccC
Q 041143 680 VRHRHLVSLLGYSIE--GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDL 757 (973)
Q Consensus 680 l~h~niv~l~~~~~~--~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Di 757 (973)
++||||+++++++.+ .+..++||||+++|+|.+++. ...+++.++..++.||++||+||| +++|+||||
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~------~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dl 163 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT------LKPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDI 163 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC------SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh------cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCC
Confidence 999999999999987 567899999999999976542 357899999999999999999999 789999999
Q ss_pred CCCcEEECCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCc---CCCchhHHhHHHHHHHHHhCCCCCCC
Q 041143 758 KSSNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGK---ITTKADVFSYGVVLMELLTGLAALDE 834 (973)
Q Consensus 758 kp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~ 834 (973)
||+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||..
T Consensus 164 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 242 (298)
T 2zv2_A 164 KPSNLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMD 242 (298)
T ss_dssp CGGGEEECTTSCEEECCCTTCEECSSSS-CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CHHHEEECCCCCEEEecCCCcccccccc-ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence 9999999999999999999998654432 2234567999999999987655 47789999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 835 ERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
...... ...+... ... .. ........+.+++.+|++.||++||++.||++
T Consensus 243 ~~~~~~------~~~~~~~------~~~--~~---~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 243 ERIMCL------HSKIKSQ------ALE--FP---DQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SSHHHH------HHHHHHC------CCC--CC---SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ccHHHH------HHHHhcc------cCC--CC---CccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 543211 1111110 000 00 00112245789999999999999999999986
No 86
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=7.6e-40 Score=378.94 Aligned_cols=253 Identities=30% Similarity=0.444 Sum_probs=207.3
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC-eEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN-ERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lV~ 702 (973)
.++|...+.||+|+||.||+|.+. |+.||||+++... ..+.|.+|++++++++|||||++++++.+.+ ..++||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~ 266 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 266 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence 467888999999999999999886 7899999997542 3467899999999999999999999988765 789999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ....+++..++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 267 e~~~~g~L~~~l~~~---~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~ 340 (450)
T 1k9a_A 267 EYMAKGSLVDYLRSR---GRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 340 (450)
T ss_dssp ECCTTCBHHHHHHHH---CTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EecCCCcHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence 999999999999763 2244789999999999999999999 7899999999999999999999999999998543
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.. .....+++.|+|||++.+..++.++|||||||++|||++ |+.||......+.. . .+.. ..
T Consensus 341 ~~----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~---~---~i~~-------~~ 403 (450)
T 1k9a_A 341 ST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV---P---RVEK-------GY 403 (450)
T ss_dssp ----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHH---H---HHHT-------TC
T ss_pred cc----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH---H---HHHc-------CC
Confidence 22 122367899999999999999999999999999999998 99999876543221 1 1111 11
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.... +......+.+++.+||+.||++||++.+|++.|+.+...
T Consensus 404 ~~~~-----p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 404 KMDA-----PDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp CCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCC-----CCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 1111 111234578999999999999999999999999988764
No 87
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=6.4e-40 Score=357.30 Aligned_cols=262 Identities=29% Similarity=0.517 Sum_probs=200.6
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|+.. ..||||+++.........+.+.+|++++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 467899999999999999999875 3599999987766777778899999999999999999999965 4566899999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++++|.+++... ...+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 100 ~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 172 (289)
T 3og7_A 100 WCEGSSLYHHLHAS----ETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR 172 (289)
T ss_dssp CCCEEEHHHHHTTC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred ecCCCcHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccc
Confidence 99999999998642 256899999999999999999999 78999999999999999999999999999985432
Q ss_pred C-CcceecccccccCcccccccc---cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 784 G-EKSVVTRLAGTFGYLAPEYAV---MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 784 ~-~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
. .........||+.|+|||++. ...++.++|||||||++|||++|+.||......+. +...+.. .
T Consensus 173 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~--~~~~~~~---------~ 241 (289)
T 3og7_A 173 WSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ--IIEMVGR---------G 241 (289)
T ss_dssp -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH--HHHHHHH---------T
T ss_pred ccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH--HHHHhcc---------c
Confidence 1 222334567999999999986 56788899999999999999999999987553321 1111110 1
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+.+. .........+.+++.+|++.||++||++.|+++.|+++.+
T Consensus 242 ~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 242 SLSPDLS--KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp SCCCCTT--SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ccCcchh--hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 1111111 1111223458899999999999999999999999998764
No 88
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.9e-39 Score=363.81 Aligned_cols=277 Identities=22% Similarity=0.344 Sum_probs=206.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC------
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN------ 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 696 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++++++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 468999999999999999999874 6899999999766556666788999999999999999999999998653
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..++||||+ +++|.+++.. ..+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg 173 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH------EKLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFG 173 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred eEEEEEecC-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeee
Confidence 469999999 8899998864 45899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
+++..... .+...||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+... ..+........
T Consensus 174 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~--~i~~~~g~~~~ 247 (367)
T 1cm8_A 174 LARQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLK--EIMKVTGTPPA 247 (367)
T ss_dssp TCEECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHHHHCCCCH
T ss_pred cccccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHhcCCCCH
Confidence 99865432 344679999999999887 679999999999999999999999998765433211 11110000000
Q ss_pred HH---------H---hhcCccc--cCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCCCc
Q 041143 856 KF---------K---AAIDPAL--EVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDESE 918 (973)
Q Consensus 856 ~~---------~---~~~~~~l--~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~~ 918 (973)
.+ . ..+.... ............+.+++.+|++.||++|||+.|+++ +++++.+....+++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~--hp~f~~~~~~~~~~~ 322 (367)
T 1cm8_A 248 EFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA--HPYFESLHDTEDEPQ 322 (367)
T ss_dssp HHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH--SGGGTTTC------C
T ss_pred HHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc--ChHHHhhcCCccCCC
Confidence 00 0 0000000 000000112345789999999999999999999999 888877665554443
No 89
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=357.11 Aligned_cols=276 Identities=24% Similarity=0.335 Sum_probs=208.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|+.. +|+.||||++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 368999999999999999999875 5899999998776555666778899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++++|..++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 82 e~~~~~~l~~~~~~-----~~~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 153 (311)
T 4agu_A 82 EYCDHTVLHELDRY-----QRGVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLT 153 (311)
T ss_dssp ECCSEEHHHHHHHT-----SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EeCCCchHHHHHhh-----hcCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhcc
Confidence 99999999888754 255899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH--------HHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW--------RIKSS 853 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~--------~~~~~ 853 (973)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+......... .....
T Consensus 154 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (311)
T 4agu_A 154 GPSD-YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFST 232 (311)
T ss_dssp -------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHT
T ss_pred Cccc-ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccccccccccc
Confidence 3322 2344579999999999876 678999999999999999999999998776543322211100 00000
Q ss_pred hhHHHhhcCccccCCccc-----HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 854 KEKFKAAIDPALEVNEET-----FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
.........+... .... ......+.+++.+|++.||++|||++|+++ +++++...
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~f~~~~ 292 (311)
T 4agu_A 233 NQYFSGVKIPDPE-DMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH--HPYFENIR 292 (311)
T ss_dssp CGGGTTCCCCCCS-SCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT--SGGGTTCC
T ss_pred ccccccCcCCCcc-ccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc--ChHHHhcc
Confidence 0000000000000 0000 112234789999999999999999999998 67766543
No 90
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=4.6e-40 Score=354.87 Aligned_cols=252 Identities=29% Similarity=0.486 Sum_probs=194.4
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCC--hHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTT--TKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|.+. |+.||||+++..... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 67889999999999999999986 889999998654222 223467899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC---eeeccCCCCcEEECC--------CCCEE
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT---FIHRDLKSSNILLDD--------DYRAK 771 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~---ivH~Dikp~Nill~~--------~~~~k 771 (973)
||+++|+|.+++.. ..+++..+..++.|++.||+||| +++ |+||||||+||+++. ++.+|
T Consensus 86 e~~~~~~L~~~~~~------~~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~k 156 (271)
T 3dtc_A 86 EFARGGPLNRVLSG------KRIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILK 156 (271)
T ss_dssp ECCTTEEHHHHHTS------SCCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEE
T ss_pred EcCCCCCHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceE
Confidence 99999999998843 56899999999999999999999 566 999999999999986 67899
Q ss_pred EeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh
Q 041143 772 VSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK 851 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 851 (973)
|+|||+++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||.......... ...
T Consensus 157 l~Dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~------~~~ 227 (271)
T 3dtc_A 157 ITDFGLAREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAY------GVA 227 (271)
T ss_dssp ECCCCC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHH------HHH
T ss_pred EccCCccccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH------hhh
Confidence 99999998554322 224579999999999999999999999999999999999999998765332111 011
Q ss_pred hchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 852 SSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 852 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
. ....... .......+.+++.+|++.||++||++.|+++.|+.+
T Consensus 228 ~------~~~~~~~-----~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 228 M------NKLALPI-----PSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp T------SCCCCCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred c------CCCCCCC-----CcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0 0011111 111224578999999999999999999999998753
No 91
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.1e-39 Score=370.43 Aligned_cols=257 Identities=25% Similarity=0.363 Sum_probs=204.4
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC--CCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR--HRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lV~ 702 (973)
.+|...+.||+|+||.||+|...+++.||||++..........+.+.+|++++++++ |||||++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 468999999999999999999888999999999876556677788999999999996 599999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
| +.+|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+|||++ ++.+||+|||+++...
T Consensus 136 E-~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~ 205 (390)
T 2zmd_A 136 E-CGNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ 205 (390)
T ss_dssp E-CCSEEHHHHHHH-----CSSCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred e-cCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence 9 568999999975 246889999999999999999999 88999999999999996 5799999999998654
Q ss_pred CCCc-ceecccccccCccccccccc-----------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 783 DGEK-SVVTRLAGTFGYLAPEYAVM-----------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 783 ~~~~-~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
.... ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 206 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~---------- 275 (390)
T 2zmd_A 206 PDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS---------- 275 (390)
T ss_dssp --------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH----------
T ss_pred CCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHH----------
Confidence 3322 22345679999999999865 4688999999999999999999999976532211
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+..++++...... +......+.+++.+||+.||++||++.||++ +++++.
T Consensus 276 -----~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~Rps~~ell~--hp~~~~ 326 (390)
T 2zmd_A 276 -----KLHAIIDPNHEIEF-PDIPEKDLQDVLKCCLKRDPKQRISIPELLA--HPYVQI 326 (390)
T ss_dssp -----HHHHHHCTTSCCCC-CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHHS
T ss_pred -----HHHHHhCccccCCC-CccchHHHHHHHHHHcccChhhCCCHHHHhh--CcCccc
Confidence 11122222211000 0001235779999999999999999999998 566653
No 92
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.7e-39 Score=362.18 Aligned_cols=261 Identities=22% Similarity=0.366 Sum_probs=206.1
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 701 (973)
++|...+.||+|+||.||+|+.+ +++.||||+++... ......+.+.+|..++.++ +|||||++++++.+.+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 67899999999999999999875 58899999997543 3445567789999999988 899999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++..
T Consensus 89 ~e~~~gg~L~~~l~~~-----~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~ 160 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ-----RKLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 160 (345)
T ss_dssp ECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred EeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccc
Confidence 9999999999998652 45899999999999999999999 789999999999999999999999999999854
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHH--HHHHHHHHHhhchhHHHh
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESR--YLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 859 (973)
.... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+.. ....... ..
T Consensus 161 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~---------~~ 230 (345)
T 3a8x_A 161 LRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF---------QV 230 (345)
T ss_dssp CCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHH---------HH
T ss_pred cCCC-CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHH---------HH
Confidence 3222 2244568999999999999999999999999999999999999999753221110 0000000 11
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH------hHHHHHHHHhhh
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDM------GHVVNVLSPLVE 908 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~------~~v~~~L~~~~~ 908 (973)
+....+.... .....+.+++.+|++.||++||++ .||++ +++.+
T Consensus 231 i~~~~~~~p~---~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~--hp~f~ 280 (345)
T 3a8x_A 231 ILEKQIRIPR---SLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQG--HPFFR 280 (345)
T ss_dssp HHHCCCCCCT---TSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHT--SGGGT
T ss_pred HHcCCCCCCC---CCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhc--CCccC
Confidence 1111111111 122357799999999999999996 56655 44443
No 93
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=356.57 Aligned_cols=259 Identities=29% Similarity=0.489 Sum_probs=201.6
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
++|+..+.||+|+||.||+|+.. ++.||||++... ...+.|.+|++++++++||||+++++++.+ ..++||||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~ 80 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE----SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEY 80 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST----THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEEC
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh----hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEc
Confidence 57888999999999999999886 788999998642 345689999999999999999999998873 47999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC-EEEeeccccccCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR-AKVSDFGLVKLAPD 783 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~-~kl~DfGla~~~~~ 783 (973)
+++|+|.+++.... ....+++..++.++.|+++||+|||+...++|+||||||+||+++.++. +||+|||+++....
T Consensus 81 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~ 158 (307)
T 2eva_A 81 AEGGSLYNVLHGAE--PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT 158 (307)
T ss_dssp CTTCBHHHHHHCSS--SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------
T ss_pred CCCCCHHHHHhccC--CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc
Confidence 99999999997532 2235789999999999999999999433389999999999999998886 79999999975432
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
. .....||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..+.... ...+
T Consensus 159 ~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~----~~~~~~~-------~~~~ 223 (307)
T 2eva_A 159 H----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR----IMWAVHN-------GTRP 223 (307)
T ss_dssp ----------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHH----HHHHHHT-------TCCC
T ss_pred c----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHH----HHHHHhc-------CCCC
Confidence 2 23346999999999999999999999999999999999999999765432211 1111110 0111
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
... ......+.+++.+|++.||++||++.+|++.|+.+.+.+..
T Consensus 224 ~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 224 PLI-----KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp CCB-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred Ccc-----cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 111 11123577999999999999999999999999999776543
No 94
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.2e-39 Score=363.10 Aligned_cols=266 Identities=25% Similarity=0.385 Sum_probs=214.4
Q ss_pred hcCccccCcccccCccEEEEEEEC--------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEe
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE--------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIE 694 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 694 (973)
.++|...+.||+|+||.||+|++. ++..||||+++.. ......+.+.+|+++++++ +||||+++++++..
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD-ATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC-CcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 368899999999999999999863 4678999999754 3455677899999999999 89999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhc-----------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKL-----------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNIL 763 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nil 763 (973)
.+..++||||+++|+|.+++...... ....+++.+++.++.||+.||+||| +.+|+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEE
Confidence 99999999999999999999763321 1235899999999999999999999 789999999999999
Q ss_pred ECCCCCEEEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHH
Q 041143 764 LDDDYRAKVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESR 841 (973)
Q Consensus 764 l~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~ 841 (973)
++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+..
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~ 269 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF 269 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHH
Confidence 99999999999999986544322 12233467889999999999999999999999999999999 99999876533211
Q ss_pred HHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 842 YLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
..+. ........ ......+.+++.+|++.||.+||++.||++.|+.+.....
T Consensus 270 ------~~~~-------~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 270 ------KLLK-------EGHRMDKP-----ANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp ------HHHH-------HTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ------HHHh-------cCCCCCCC-----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 1111 11111111 1122457899999999999999999999999999987543
No 95
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.2e-40 Score=367.70 Aligned_cols=266 Identities=24% Similarity=0.393 Sum_probs=209.4
Q ss_pred HhcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeC
Q 041143 623 VTQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEG 695 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 695 (973)
..++|...+.||+|+||.||+|+. .++..||||+++... .....+.+.+|++++.++ +||||+++++++...
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 121 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA-DSSEREALMSELKMMTQLGSHENIVNLLGACTLS 121 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccccc-CHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence 347899999999999999999986 245689999997542 334456899999999999 899999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhc------------------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccC
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKL------------------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDL 757 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~------------------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Di 757 (973)
+..++||||+++|+|.+++...... ....+++..++.++.||+.||+||| +++|+||||
T Consensus 122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Di 198 (344)
T 1rjb_A 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDL 198 (344)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTC
T ss_pred CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCC
Confidence 9999999999999999999763221 1134899999999999999999999 789999999
Q ss_pred CCCcEEECCCCCEEEeeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCC
Q 041143 758 KSSNILLDDDYRAKVSDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEE 835 (973)
Q Consensus 758 kp~Nill~~~~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~ 835 (973)
||+||+++.++.+||+|||+++...... ........||+.|+|||.+.+..++.++|||||||++|||+| |+.||...
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 278 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI 278 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999998543332 223344568899999999999999999999999999999998 99999876
Q ss_pred ChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 836 RPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... ... .. .....+... ......+.+++.+|++.||.+||++.||++.|+.+...
T Consensus 279 ~~~~~--~~~----~~------~~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 279 PVDAN--FYK----LI------QNGFKMDQP-----FYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp CCSHH--HHH----HH------HTTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred CcHHH--HHH----HH------hcCCCCCCC-----CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 53221 111 11 111111111 11224578999999999999999999999999988764
No 96
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.2e-39 Score=374.13 Aligned_cols=273 Identities=21% Similarity=0.285 Sum_probs=207.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC------C
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG------N 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 696 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|+.+++.++|||||++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 478999999999999999999765 688999999986655666778899999999999999999999999754 4
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..|+||||+++ +|.+.+. ..+++.++..++.||++||+||| +.+|+||||||+|||++.++.+||+|||
T Consensus 141 ~~~lv~E~~~~-~l~~~~~-------~~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG 209 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG 209 (464)
T ss_dssp EEEEEEECCSE-EHHHHHT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCC
T ss_pred eEEEEEeCCCC-CHHHHHh-------hcCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEE
Confidence 57999999965 5666553 24889999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh----
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS---- 852 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---- 852 (973)
+|+..... ...+..+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+....+... ..+.....
T Consensus 210 ~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~--~i~~~lg~p~~~ 285 (464)
T 3ttj_A 210 LARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWN--KVIEQLGTPCPE 285 (464)
T ss_dssp CC-----C--CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHHHHCSCCHH
T ss_pred eeeecCCC--cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHhcCCCCHH
Confidence 99865432 22455689999999999999999999999999999999999999998766433211 11110000
Q ss_pred ----chhHHHhhcC---------------ccccCC--cccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 853 ----SKEKFKAAID---------------PALEVN--EETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 853 ----~~~~~~~~~~---------------~~l~~~--~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
........+. ..+... .........+.+|+.+||+.||++|||++|+++ +++++.|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~--Hp~~~~~~ 363 (464)
T 3ttj_A 286 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ--HPYINVWY 363 (464)
T ss_dssp HHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT--STTTGGGC
T ss_pred HHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc--Chhhhhcc
Confidence 0001111111 110000 011112456889999999999999999999999 88888765
Q ss_pred CC
Q 041143 912 PI 913 (973)
Q Consensus 912 ~~ 913 (973)
.+
T Consensus 364 ~~ 365 (464)
T 3ttj_A 364 DP 365 (464)
T ss_dssp CH
T ss_pred Cc
Confidence 43
No 97
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=3.8e-40 Score=366.61 Aligned_cols=252 Identities=27% Similarity=0.417 Sum_probs=204.3
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 698 (973)
...++|...+.||+|+||.||+|+.+ +|+.||||+++.... .....+.+..|.+++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999875 588999999965311 112345678899999887 899999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccc
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLV 778 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla 778 (973)
++||||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||++
T Consensus 94 ~lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a 165 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC-----HKFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMC 165 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEEEeCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhh
Confidence 9999999999999999652 45899999999999999999999 789999999999999999999999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
+...... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+....
T Consensus 166 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~------~~~i~~~~---- 234 (345)
T 1xjd_A 166 KENMLGD-AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL------FHSIRMDN---- 234 (345)
T ss_dssp BCCCCTT-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCC----
T ss_pred hhcccCC-CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHH------HHHHHhCC----
Confidence 8543322 224457899999999999999999999999999999999999999987654321 11111111
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHh-HHHH
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMG-HVVN 901 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~-~v~~ 901 (973)
+.+. . .....+.+++.+|++.||++||++. +|.+
T Consensus 235 ----~~~p-~----~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 235 ----PFYP-R----WLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp ----CCCC-T----TSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred ----CCCC-c----ccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 1111 0 1123477999999999999999998 6665
No 98
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=7.4e-40 Score=361.89 Aligned_cols=272 Identities=28% Similarity=0.421 Sum_probs=211.4
Q ss_pred ccccCcccccCccEEEEEEEC-----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC--CeEE
Q 041143 627 FAQENELGRGGFGTVYKGELE-----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG--NERL 699 (973)
Q Consensus 627 ~~~~~~lG~G~fg~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~ 699 (973)
|...+.||+|+||.||++.+. +|+.||||+++.. ......+.+.+|++++++++||||+++++++.+. ...+
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD-AGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc-cChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 488899999999999998653 5889999999765 3455677899999999999999999999999884 5789
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++.. ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 112 lv~e~~~~~~L~~~l~~------~~~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 182 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPR------HSIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 182 (318)
T ss_dssp EEECCCTTCBHHHHGGG------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCE
T ss_pred EEEecccCCcHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccc
Confidence 99999999999999854 34899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcc--eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 780 LAPDGEKS--VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 780 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
........ ......||..|+|||++.+..++.++|||||||++|||++|+.||........ ....+...... ...+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~-~~~~~~~~~~~-~~~~ 260 (318)
T 3lxp_A 183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFL-ELIGIAQGQMT-VLRL 260 (318)
T ss_dssp ECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHH-HHHCSCCHHHH-HHHH
T ss_pred cccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhh-hhhcccccchh-HHHH
Confidence 76544322 23345688899999999999999999999999999999999999865321110 00000000000 0011
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
.+.+..... ..........+.+++.+|++.||++||++.|+++.|+.+.+++.
T Consensus 261 ~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 313 (318)
T 3lxp_A 261 TELLERGER-LPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQ 313 (318)
T ss_dssp HHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccC-CCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhc
Confidence 111111111 01111223568899999999999999999999999999988754
No 99
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=376.01 Aligned_cols=269 Identities=22% Similarity=0.278 Sum_probs=212.0
Q ss_pred HHHHHHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 617 VQVLRKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 617 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
..+.+...++|+..+.||+|+||.||+|+.+ +|+.||||+++.... .....+.+.+|..++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444455689999999999999999999875 689999999864211 11223458899999999999999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEee
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSD 774 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~D 774 (973)
.+..|+||||+++|+|.+++.+. ...+++..+..++.||+.||+||| +++|+||||||+|||++.++++||+|
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~----~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~D 205 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKF----GERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLAD 205 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH----SSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEee
Confidence 99999999999999999999752 246899999999999999999999 78999999999999999999999999
Q ss_pred ccccccCCCCCcceecccccccCcccccccc-------cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV-------MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
||+++.............+||+.|+|||++. ...++.++|||||||++|||++|+.||......+. +
T Consensus 206 FGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~------~ 279 (412)
T 2vd5_A 206 FGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAET------Y 279 (412)
T ss_dssp CTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------H
T ss_pred chhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHH------H
Confidence 9999876554433344568999999999987 46789999999999999999999999987654322 1
Q ss_pred HHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCC---CCHhHHHHHHHHhhhh
Q 041143 848 WRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHR---PDMGHVVNVLSPLVEK 909 (973)
Q Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~R---Ps~~~v~~~L~~~~~~ 909 (973)
..+..... ....+... ......+.+++.+|+. +|++| |++.||.+ +++.+.
T Consensus 280 ~~i~~~~~---~~~~p~~~-----~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~--Hpff~~ 333 (412)
T 2vd5_A 280 GKIVHYKE---HLSLPLVD-----EGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT--HPFFFG 333 (412)
T ss_dssp HHHHTHHH---HCCCC---------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT--SGGGTT
T ss_pred HHHHhccc---CcCCCccc-----cCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc--CCCcCC
Confidence 11111000 00011110 1112457799999999 99998 58999887 666653
No 100
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=357.11 Aligned_cols=272 Identities=22% Similarity=0.305 Sum_probs=209.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC--eEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN--ERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV 701 (973)
++|...+.||+|+||.||+|+.. +|+.||||+++... .....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNIS-FLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGG-GGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEecccc-ccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 57889999999999999999876 48999999987532 2233567889999999999999999999998765 77999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE----CCCCCEEEeeccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL----DDDYRAKVSDFGL 777 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill----~~~~~~kl~DfGl 777 (973)
|||+++|+|.+++..... ...+++.+++.++.||+.||+||| +.+|+||||||+||++ +.++.+||+|||+
T Consensus 88 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~ 162 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (319)
T ss_dssp EECCTTCBHHHHHHSGGG--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred EeCCCCCCHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence 999999999999976322 234899999999999999999999 7899999999999999 7888899999999
Q ss_pred cccCCCCCcceecccccccCcccccccc--------cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAV--------MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
++....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||......... ...+..
T Consensus 163 a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~~~~~ 238 (319)
T 4euu_A 163 ARELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN--KEVMYK 238 (319)
T ss_dssp CEECCTTCC--BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGC--HHHHHH
T ss_pred ceecCCCCc--eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchh--HHHHHH
Confidence 986654332 33457999999999886 578899999999999999999999999754432211 111111
Q ss_pred Hhhchh--HHH---hhcC------cccc-CCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 850 IKSSKE--KFK---AAID------PALE-VNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 850 ~~~~~~--~~~---~~~~------~~l~-~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
+..... ... .... +.+. ...........+.+++.+|++.||++||+++|+++.....
T Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 239 IITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred HhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 111000 000 0000 0111 0122345566788999999999999999999999866543
No 101
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=3.7e-39 Score=350.41 Aligned_cols=259 Identities=24% Similarity=0.360 Sum_probs=212.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +|+.||+|++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 478999999999999999999875 5899999999776556667788999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC---EEEeeccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR---AKVSDFGLVK 779 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~---~kl~DfGla~ 779 (973)
||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++.
T Consensus 85 e~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~ 156 (284)
T 3kk8_A 85 DLVTGGELFEDIVAR-----EFYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI 156 (284)
T ss_dssp CCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred ecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeE
Confidence 999999999988652 45899999999999999999999 789999999999999986655 9999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......... ..+...
T Consensus 157 ~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~------~~~~~~------ 222 (284)
T 3kk8_A 157 EVNDSE--AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLY------AQIKAG------ 222 (284)
T ss_dssp ECCSSC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH------HHHHHT------
T ss_pred EcccCc--cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHH------HHHHhc------
Confidence 665432 234467999999999999999999999999999999999999999876533211 111110
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...... .........+.+++.+|++.||++||++.|+++ ++++..
T Consensus 223 ~~~~~~---~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--h~~~~~ 267 (284)
T 3kk8_A 223 AYDYPS---PEWDTVTPEAKSLIDSMLTVNPKKRITADQALK--VPWICN 267 (284)
T ss_dssp CCCCCT---TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT--SHHHHS
T ss_pred cccCCc---hhhcccCHHHHHHHHHHcccChhhCCCHHHHhc--CccccC
Confidence 000000 000111244779999999999999999999998 666654
No 102
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1.7e-39 Score=358.68 Aligned_cols=278 Identities=21% Similarity=0.323 Sum_probs=197.5
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +|+.||||+++... .....+.+.+|++++++++||||+++++++..++..++||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDS-EEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCS-TTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccc-ccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 357889999999999999999865 58999999997542 2223456889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 703 EYMPHGALSRHLFRWEKL-QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
||++ |+|.+++...... ....+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9997 6999998764321 1245899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH-Hh
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF-KA 859 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 859 (973)
..... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+... ............. ..
T Consensus 159 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~i~~~~~~~~~~~~~~ 235 (317)
T 2pmi_A 159 GIPVN-TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLK--LIFDIMGTPNESLWPS 235 (317)
T ss_dssp TSCCC-CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH--HHHHHHCSCCTTTCGG
T ss_pred CCCcc-cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHH--HHHHHhCCCChhHhhh
Confidence 43221 2334578999999999876 468999999999999999999999998766433211 1111110000000 00
Q ss_pred -----hcCccccC--Ccc---------cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 860 -----AIDPALEV--NEE---------TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 860 -----~~~~~l~~--~~~---------~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...+.+.. ... .......+.+++.+|++.||++|||+.|+++ ++++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~--hp~f~~~~ 301 (317)
T 2pmi_A 236 VTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH--HPWFAEYY 301 (317)
T ss_dssp GGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT--SGGGGGGC
T ss_pred hhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC--Chhhhccc
Confidence 00000000 000 0011235889999999999999999999998 77776544
No 103
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=9.3e-40 Score=367.75 Aligned_cols=251 Identities=23% Similarity=0.335 Sum_probs=203.0
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +++.||+|++.... ......+.+.+|+++++.++|||||++++++.+.+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 67899999999999999999875 58899999986431 11223467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|..++.. ...+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 95 e~~~gg~L~~~l~~-----~~~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 166 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ-----NVHFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLP 166 (384)
T ss_dssp CCCTTEEHHHHHHT-----TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred ecCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeecc
Confidence 99999999999865 246899999999999999999999 8899999999999999999999999999998664
Q ss_pred CCCcceecccccccCccccccccc---CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVM---GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
... .....+||+.|+|||++.. ..++.++|||||||++|||++|+.||..........+...+ ...
T Consensus 167 ~~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~---~~~------ 235 (384)
T 4fr4_A 167 RET--QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTF---ETT------ 235 (384)
T ss_dssp TTC--CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHH---HHC------
T ss_pred CCC--ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHH---hhc------
Confidence 432 3455789999999999864 45899999999999999999999999865433322221111 110
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCC-HhHHHH
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPD-MGHVVN 901 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs-~~~v~~ 901 (973)
...+. ......+.+++.+|++.||.+||+ +.+|.+
T Consensus 236 --~~~~p-----~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 236 --VVTYP-----SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp --CCCCC-----TTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred --ccCCC-----CcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 00010 111245789999999999999998 666665
No 104
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=4e-40 Score=389.07 Aligned_cols=259 Identities=30% Similarity=0.472 Sum_probs=211.4
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|.+.++..||||+++..... .++|.+|+++|++++|||||++++++.+ +..++|||
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e 341 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS---PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 341 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSC---HHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCC---HHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeee
Confidence 4678888999999999999999988888999999765322 4578999999999999999999999876 67899999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++|+|.+++.... ...+++.+++.|+.||++||+||| +++|+||||||+|||+++++.+||+|||+++....
T Consensus 342 ~~~~gsL~~~l~~~~---~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 415 (535)
T 2h8h_A 342 YMSKGSLLDFLKGET---GKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIED 415 (535)
T ss_dssp CCTTEEHHHHHSHHH---HTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCC
T ss_pred hhcCCcHHHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCC
Confidence 999999999997532 245899999999999999999999 78999999999999999999999999999986543
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
..........++..|+|||++....++.++|||||||++|||++ |+.||......+.. ..+.. ...
T Consensus 416 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~------~~i~~-------~~~ 482 (535)
T 2h8h_A 416 NEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL------DQVER-------GYR 482 (535)
T ss_dssp HHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHH------HHHHT-------TCC
T ss_pred CceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH------HHHHc-------CCC
Confidence 22222233457889999999999999999999999999999999 99999876543211 11111 011
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
... .......+.+|+.+||+.||++||++.+|++.|+.+....
T Consensus 483 ~~~-----~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 483 MPC-----PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp CCC-----CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred CCC-----CCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 111 1112345789999999999999999999999999887643
No 105
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.3e-39 Score=360.09 Aligned_cols=269 Identities=25% Similarity=0.400 Sum_probs=206.2
Q ss_pred HHHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc--CCCceeeeeeEEEeC-
Q 041143 619 VLRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV--RHRHLVSLLGYSIEG- 695 (973)
Q Consensus 619 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~- 695 (973)
..+...++|...+.||+|+||.||+|+.. |+.||||++... . ...+.+|.+++... +||||+++++++...
T Consensus 31 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~ 104 (337)
T 3mdy_A 31 VQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---E--EASWFRETEIYQTVLMRHENILGFIAADIKGT 104 (337)
T ss_dssp HHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---G--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC
T ss_pred cccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---c--cchhhhHHHHHHHHhhcCCCeeeEEEEEccCC
Confidence 33456689999999999999999999887 899999998643 1 23445566666554 899999999999987
Q ss_pred ---CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC--------CeeeccCCCCcEEE
Q 041143 696 ---NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ--------TFIHRDLKSSNILL 764 (973)
Q Consensus 696 ---~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~--------~ivH~Dikp~Nill 764 (973)
...++||||+++|+|.+++.. ..+++.+++.++.|++.||+||| .. +|+||||||+|||+
T Consensus 105 ~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill 175 (337)
T 3mdy_A 105 GSWTQLYLITDYHENGSLYDYLKS------TTLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILV 175 (337)
T ss_dssp GGGCEEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEE
T ss_pred CCCCceEEEEeccCCCcHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEE
Confidence 788999999999999999965 45899999999999999999999 66 99999999999999
Q ss_pred CCCCCEEEeeccccccCCCCCcce---ecccccccCcccccccccCcCCCc------hhHHhHHHHHHHHHhC-------
Q 041143 765 DDDYRAKVSDFGLVKLAPDGEKSV---VTRLAGTFGYLAPEYAVMGKITTK------ADVFSYGVVLMELLTG------- 828 (973)
Q Consensus 765 ~~~~~~kl~DfGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~S~Gvvl~elltg------- 828 (973)
+.++.+||+|||+++......... .....||+.|+|||++.+..++.+ +|||||||++|||++|
T Consensus 176 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~ 255 (337)
T 3mdy_A 176 KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIV 255 (337)
T ss_dssp CTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred CCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccc
Confidence 999999999999997554332221 224579999999999987766665 9999999999999999
Q ss_pred ---CCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHH
Q 041143 829 ---LAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSP 905 (973)
Q Consensus 829 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~ 905 (973)
+.||.......... .. .... .......+.+............+.+++.+|++.||++||++.||++.|+.
T Consensus 256 ~~~~~p~~~~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~ 328 (337)
T 3mdy_A 256 EEYQLPYHDLVPSDPSY-ED-MREI-----VCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAK 328 (337)
T ss_dssp CCCCCTTTTTSCSSCCH-HH-HHHH-----HTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred ccccccHhhhcCCCCch-hh-hHHH-----HhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHH
Confidence 66665443222110 00 0000 00111122222111223566778999999999999999999999999999
Q ss_pred hhhh
Q 041143 906 LVEK 909 (973)
Q Consensus 906 ~~~~ 909 (973)
+.+.
T Consensus 329 l~~~ 332 (337)
T 3mdy_A 329 MSES 332 (337)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9774
No 106
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.5e-39 Score=352.27 Aligned_cols=254 Identities=32% Similarity=0.593 Sum_probs=202.6
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHH-----HHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKAL-----DEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~-----~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
++|...+.||+|+||.||+|++. +++.||||++.......... +.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 67888999999999999999874 78999999986543222211 67899999999999999999999987655
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEECCCCC-----EE
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLDDDYR-----AK 771 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~~~~~-----~k 771 (973)
++||||+++|+|.+++.. ....+++..++.++.|++.||+||| +++ |+||||||+||+++.++. +|
T Consensus 97 ~lv~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~k 169 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLD----KAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAK 169 (287)
T ss_dssp EEEEECCTTCBHHHHHHC----TTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEE
T ss_pred eEEEEecCCCCHHHHHhc----ccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEE
Confidence 799999999999998864 2356899999999999999999999 777 999999999999988776 99
Q ss_pred EeeccccccCCCCCcceecccccccCccccccc--ccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 772 VSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYA--VMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
|+|||+++.... ......||+.|+|||++ ....++.++|||||||++|||++|+.||............ .
T Consensus 170 l~Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~----~ 241 (287)
T 4f0f_A 170 VADFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFIN----M 241 (287)
T ss_dssp ECCCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHH----H
T ss_pred eCCCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHH----H
Confidence 999999985433 23446799999999998 3556789999999999999999999999866543321111 1
Q ss_pred HhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 850 IKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
.. .....+.+. ......+.+++.+|++.||++||++.||++.|+++
T Consensus 242 ~~------~~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 242 IR------EEGLRPTIP-----EDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HH------HSCCCCCCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred Hh------ccCCCCCCC-----cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 10 011111111 11224578999999999999999999999998753
No 107
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.8e-39 Score=358.13 Aligned_cols=267 Identities=27% Similarity=0.404 Sum_probs=205.0
Q ss_pred HhcCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe-
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE- 697 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 697 (973)
..++|...+.||+|+||.||+|... .+..||||+++.........+.+.+|++++++++||||+++++++.+.+.
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3468889999999999999999764 34589999998665566777889999999999999999999999987553
Q ss_pred ----EEEEEEecCCCCHHHHHHhhhh-ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEE
Q 041143 698 ----RLLVYEYMPHGALSRHLFRWEK-LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKV 772 (973)
Q Consensus 698 ----~~lV~e~~~~g~L~~~l~~~~~-~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl 772 (973)
.++||||+++|+|.+++..... .....+++.+++.++.||++||+||| +++|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEE
Confidence 4999999999999999865322 23356999999999999999999999 889999999999999999999999
Q ss_pred eeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHH
Q 041143 773 SDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 773 ~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+|||+++....... .......+++.|+|||.+.+..++.++|||||||++|||++ |+.||......+... ..
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~------~~ 262 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYD------YL 262 (313)
T ss_dssp CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH------HH
T ss_pred eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH------HH
Confidence 99999986543321 12233467889999999999999999999999999999999 899998765432211 11
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.. ...+.. .......+.+++.+|++.||.+||++.++++.|+.+.+..
T Consensus 263 ~~-------~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~l 310 (313)
T 3brb_A 263 LH-------GHRLKQ-----PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESL 310 (313)
T ss_dssp HT-------TCCCCC-----BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred Hc-------CCCCCC-----CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 10 001111 1112245889999999999999999999999999998754
No 108
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2e-39 Score=364.27 Aligned_cols=260 Identities=23% Similarity=0.313 Sum_probs=198.0
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|...+.||+|+||.||+|+.. +++.||||++...... .+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI---DENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS---CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc---cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 67999999999999999999876 6899999999764322 2467899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC--EEEeeccccccC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR--AKVSDFGLVKLA 781 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~--~kl~DfGla~~~ 781 (973)
|+++|+|.+++.. ...+++..+..++.|++.||+||| +++|+||||||+||+++.++. +||+|||+++..
T Consensus 97 ~~~~~~L~~~l~~-----~~~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~ 168 (361)
T 3uc3_A 97 YASGGELYERICN-----AGRFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSS 168 (361)
T ss_dssp CCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---
T ss_pred eCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccc
Confidence 9999999999865 245899999999999999999999 889999999999999987765 999999999843
Q ss_pred CCCCcceecccccccCcccccccccCcCCCc-hhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTK-ADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
.... ......||+.|+|||++.+..++.+ +|||||||++|||++|+.||........ ....+..+
T Consensus 169 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~--~~~~~~~~---------- 234 (361)
T 3uc3_A 169 VLHS--QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD--YRKTIQRI---------- 234 (361)
T ss_dssp --------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC--HHHHHHHH----------
T ss_pred cccC--CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH--HHHHHHHH----------
Confidence 3221 2334579999999999988887765 8999999999999999999976543211 11111111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
......... .......+.+++.+|++.||++|||+.|+++ ++++.++.+
T Consensus 235 ~~~~~~~~~-~~~~s~~~~~li~~~L~~dP~~Rps~~ell~--hp~f~~~~~ 283 (361)
T 3uc3_A 235 LSVKYSIPD-DIRISPECCHLISRIFVADPATRISIPEIKT--HSWFLKNLP 283 (361)
T ss_dssp HTTCCCCCT-TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT--SHHHHTTCC
T ss_pred hcCCCCCCC-cCCCCHHHHHHHHHHccCChhHCcCHHHHHh--CcchhcCCc
Confidence 111111000 0011245779999999999999999999998 777765443
No 109
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.3e-39 Score=363.60 Aligned_cols=251 Identities=25% Similarity=0.329 Sum_probs=206.6
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||||+++.... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 67899999999999999999875 689999999864311 1123467889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 121 e~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~ 192 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI-----GRFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK 192 (350)
T ss_dssp ECCTTCBHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred cCCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceecc
Confidence 999999999999752 45899999999999999999999 8899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
.. ....+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+...
T Consensus 193 ~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~------~~~i~~~--------- 253 (350)
T 1rdq_E 193 GR----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI------YEKIVSG--------- 253 (350)
T ss_dssp SC----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC---------
T ss_pred CC----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHH------HHHHHcC---------
Confidence 32 2346799999999999999999999999999999999999999987653221 1112111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCC-----HhHHHHHHHHhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPD-----MGHVVNVLSPLVE 908 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs-----~~~v~~~L~~~~~ 908 (973)
.+.... .....+.+++.+|++.||.+||+ +.||++ +++.+
T Consensus 254 -~~~~p~---~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~--h~~f~ 298 (350)
T 1rdq_E 254 -KVRFPS---HFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN--HKWFA 298 (350)
T ss_dssp -CCCCCT---TCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT--SGGGT
T ss_pred -CCCCCC---CCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh--CcCcC
Confidence 111111 11244779999999999999998 888876 55543
No 110
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=9.9e-39 Score=351.72 Aligned_cols=268 Identities=24% Similarity=0.373 Sum_probs=204.7
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecC-CCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAG-VTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~-~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|.. .+|+.||||+++.. .......+.+.+|++++++++||||+++++++...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 5789999999999999999986 47899999999753 234556778999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++..... ....+++..++.++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 112 e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKK-QKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp ECCCSCBHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred ecCCCCCHHHHHHHhcc-cccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 99999999999976433 2356899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
.... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+. ....
T Consensus 188 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~----~~~~~~~-------~~~~ 255 (310)
T 2wqm_A 188 SKTT-AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY----SLCKKIE-------QCDY 255 (310)
T ss_dssp ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHH----HHHHHHH-------TTCS
T ss_pred CCCc-cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHH----HHHHHhh-------cccC
Confidence 3221 22345789999999999999999999999999999999999999975432111 1111111 1111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
+..... .....+.+++.+|++.||++||++.+|++.|+++...+..
T Consensus 256 ~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~ 301 (310)
T 2wqm_A 256 PPLPSD----HYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS 301 (310)
T ss_dssp CCCCTT----TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCccc----ccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence 111101 1123578999999999999999999999999999887654
No 111
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-40 Score=366.53 Aligned_cols=270 Identities=15% Similarity=0.214 Sum_probs=210.3
Q ss_pred cCccccCcccccCccEEEEEEECC---------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceee--------
Q 041143 625 QNFAQENELGRGGFGTVYKGELED---------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVS-------- 687 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------- 687 (973)
++|...+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-------~~~~~E~~~l~~l~h~niv~~~~~~~~~ 114 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-------GRLFNEQNFFQRAAKPLQVNKWKKLYST 114 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-------STHHHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-------chHHHHHHHHHHhcccchhhhhhhhccC
Confidence 688999999999999999998763 789999998753 35789999999999999988
Q ss_pred -------eeeEEEe-CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCC
Q 041143 688 -------LLGYSIE-GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKS 759 (973)
Q Consensus 688 -------l~~~~~~-~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp 759 (973)
+++++.. +...++||||+ +|+|.+++.... ...+++.+++.++.||+.||+||| +++|+||||||
T Consensus 115 ~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp 187 (352)
T 2jii_A 115 PLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP---KHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTA 187 (352)
T ss_dssp TTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCG
T ss_pred CccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC---cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCH
Confidence 6778776 67889999999 999999997632 256899999999999999999999 78999999999
Q ss_pred CcEEECCCC--CEEEeeccccccCCCCCc------ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCC
Q 041143 760 SNILLDDDY--RAKVSDFGLVKLAPDGEK------SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAA 831 (973)
Q Consensus 760 ~Nill~~~~--~~kl~DfGla~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p 831 (973)
+||+++.++ .+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus 188 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p 267 (352)
T 2jii_A 188 ENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP 267 (352)
T ss_dssp GGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred HHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence 999999998 999999999985543211 112345799999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 832 LDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
|........ .+......... ......+.... .......+.+++.+|++.||++||++.+|++.|+.+.++..
T Consensus 268 f~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 268 WTNCLPNTE-DIMKQKQKFVD---KPGPFVGPCGH----WIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp TGGGTTCHH-HHHHHHHHHHH---SCCCEECTTSC----EECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred cccCCcCHH-HHHHHHHhccC---Chhhhhhhccc----cCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 986542221 11111111110 00111111100 00112458899999999999999999999999999998766
Q ss_pred CCCCC
Q 041143 912 PITDE 916 (973)
Q Consensus 912 ~~~~~ 916 (973)
...+.
T Consensus 340 ~~~~~ 344 (352)
T 2jii_A 340 VSPYD 344 (352)
T ss_dssp CCTTS
T ss_pred CCcCc
Confidence 54433
No 112
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.8e-39 Score=352.93 Aligned_cols=259 Identities=26% Similarity=0.376 Sum_probs=202.9
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|+.. ++..||+|++.... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 99 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDR-SQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM 99 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccc-cchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence 467999999999999999999875 68899999987643 2233567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeeccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGLVK 779 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGla~ 779 (973)
||+++|+|.+++...... ...+++..+..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 100 e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~ 175 (285)
T 3is5_A 100 ETCEGGELLERIVSAQAR-GKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE 175 (285)
T ss_dssp CCCSCCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCC
T ss_pred EeCCCCcHHHHHHhhhhc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecce
Confidence 999999999999764332 367999999999999999999999 7899999999999999 456889999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
...... ......||+.|+|||++. +.++.++|||||||++|||++|+.||......+... ...
T Consensus 176 ~~~~~~--~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~------~~~-------- 238 (285)
T 3is5_A 176 LFKSDE--HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQ------KAT-------- 238 (285)
T ss_dssp C------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH------HHH--------
T ss_pred ecCCcc--cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHh------hhc--------
Confidence 654332 234567999999999875 578999999999999999999999998765432211 000
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+..... .......+.+++.+|++.||++||++.||++ +++++
T Consensus 239 ~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~--hp~f~ 283 (285)
T 3is5_A 239 YKEPNYAVE--CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH--HEWFK 283 (285)
T ss_dssp HCCCCCCC----CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT--SGGGG
T ss_pred cCCcccccc--cCcCCHHHHHHHHHHccCChhhCcCHHHHhc--CHHhh
Confidence 011111100 0011245779999999999999999999997 55543
No 113
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3e-39 Score=359.23 Aligned_cols=259 Identities=28% Similarity=0.467 Sum_probs=204.5
Q ss_pred cCccccCcccccCccEEEEEEECC-----CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELED-----GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~-----g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.+|...+.||+|+||.||+|.... +..||||+++... .......+.+|++++++++||||+++++++...+..+
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY-TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 567778999999999999997653 2359999997542 4555678999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++.+++.++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 123 lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 195 (333)
T 1mqb_A 123 IITEYMENGALDKFLREK----DGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSR 195 (333)
T ss_dssp EEEECCTTEEHHHHHHHT----TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred EEEeCCCCCcHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcch
Confidence 999999999999999652 246899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcc--eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 780 LAPDGEKS--VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 780 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
........ ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+. . ..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~---~---~~~~~---- 265 (333)
T 1mqb_A 196 VLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEV---M---KAIND---- 265 (333)
T ss_dssp ---------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH---H---HHHHT----
T ss_pred hhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHH---H---HHHHC----
Confidence 65433221 1223356889999999998999999999999999999999 9999976653221 1 11111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...... .......+.+++.+|++.||++||++.+|++.|+.+.+.
T Consensus 266 ---~~~~~~-----~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 310 (333)
T 1mqb_A 266 ---GFRLPT-----PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA 310 (333)
T ss_dssp ---TCCCCC-----CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---CCcCCC-----cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 001111 111234578999999999999999999999999998874
No 114
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1e-39 Score=361.90 Aligned_cols=257 Identities=27% Similarity=0.449 Sum_probs=202.6
Q ss_pred cCccccCcccccCccEEEEEEEC-CCC----EEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGT----KIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
++|...+.||+|+||.||+|++. +++ +||+|.+.... .....+.+.+|+.++++++||||+++++++. ++..+
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS-GRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTT-SCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccc-cHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 57888999999999999999864 344 37888775432 2223346788999999999999999999986 45689
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++..++.++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++
T Consensus 91 ~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~ 163 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQH----RGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVAD 163 (325)
T ss_dssp EEEECCTTCBSHHHHHSS----GGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred EEEEeCCCCCHHHHHHHc----cccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCccc
Confidence 999999999999999652 246899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 780 LAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 780 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
....... .......||..|+|||++.+..++.++|||||||++|||++ |+.||......+..... ...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~------~~~---- 233 (325)
T 3kex_A 164 LLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLL------EKG---- 233 (325)
T ss_dssp GSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHH------HTT----
T ss_pred ccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHH------HcC----
Confidence 6654332 23345678889999999999999999999999999999999 99999876543321111 100
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.....+.. ....+.+++.+|++.||++||++.||++.|+.+.+
T Consensus 234 ~~~~~~~~--------~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 234 ERLAQPQI--------CTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp CBCCCCTT--------BCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred CCCCCCCc--------CcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 00000100 11236689999999999999999999999998865
No 115
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=6.7e-39 Score=372.87 Aligned_cols=282 Identities=22% Similarity=0.292 Sum_probs=197.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC-----Ce
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-----NE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 697 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|++++++++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999765 689999999977656667778899999999999999999999998543 56
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.|+||||+ +|+|.+++.. ...+++..+..++.||++||+||| +.+||||||||+|||++.++.+||+|||+
T Consensus 132 ~~lv~e~~-~~~L~~~~~~-----~~~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGl 202 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRT-----PVYLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGL 202 (458)
T ss_dssp EEEEECCC-SEEHHHHHHS-----SCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecc-ccchhhhccc-----CCCCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeeccccc
Confidence 89999998 6799988854 256899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCc--------------------------ceecccccccCccccccc-ccCcCCCchhHHhHHHHHHHHHh---
Q 041143 778 VKLAPDGEK--------------------------SVVTRLAGTFGYLAPEYA-VMGKITTKADVFSYGVVLMELLT--- 827 (973)
Q Consensus 778 a~~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~ellt--- 827 (973)
|+....... ...+..+||+.|+|||++ ....++.++|||||||++|||++
T Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~ 282 (458)
T 3rp9_A 203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIK 282 (458)
T ss_dssp CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTST
T ss_pred chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcc
Confidence 986542211 123456789999999986 45679999999999999999999
Q ss_pred --------CCCCCCCCChhh-----------------HHHHHHHHHHHhhc--hh--------HHH---hhcCcccc--C
Q 041143 828 --------GLAALDEERPEE-----------------SRYLAEWFWRIKSS--KE--------KFK---AAIDPALE--V 867 (973)
Q Consensus 828 --------g~~p~~~~~~~~-----------------~~~~~~~~~~~~~~--~~--------~~~---~~~~~~l~--~ 867 (973)
|+++|.+..... .......+...... .+ ... ..+..... .
T Consensus 283 ~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (458)
T 3rp9_A 283 ENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDL 362 (458)
T ss_dssp TTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCG
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCH
Confidence 666665433100 00000001100000 00 000 00000000 0
Q ss_pred CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCC
Q 041143 868 NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDE 916 (973)
Q Consensus 868 ~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~ 916 (973)
..........+.+|+.+||+.||++|||+.|+++ +++++.+.....+
T Consensus 363 ~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~--Hp~f~~~~~~~~e 409 (458)
T 3rp9_A 363 AERFPASSADAIHLLKRMLVFNPNKRITINECLA--HPFFKEVRIAEVE 409 (458)
T ss_dssp GGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH--SGGGTTTCCGGGC
T ss_pred HHHCCCCCHHHHHHHHHHhccCccccCCHHHHhc--CHhhhhcCCCccC
Confidence 0000112345789999999999999999999999 8888876544443
No 116
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=365.08 Aligned_cols=253 Identities=27% Similarity=0.379 Sum_probs=200.2
Q ss_pred cccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEecC
Q 041143 628 AQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMP 706 (973)
Q Consensus 628 ~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~ 706 (973)
...+.||+|+||.||+|... +|+.||+|+++.. .....+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~ 169 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTR--GMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVD 169 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccc--ccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence 33578999999999999874 6899999999764 44566789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE--CCCCCEEEeeccccccCCCC
Q 041143 707 HGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL--DDDYRAKVSDFGLVKLAPDG 784 (973)
Q Consensus 707 ~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill--~~~~~~kl~DfGla~~~~~~ 784 (973)
+|+|.+++... ...+++..+..++.||++||+||| +.+|+||||||+|||+ +.++.+||+|||+++.....
T Consensus 170 ~~~L~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~ 242 (373)
T 2x4f_A 170 GGELFDRIIDE----SYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR 242 (373)
T ss_dssp TCEEHHHHHHT----GGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT
T ss_pred CCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc
Confidence 99999988652 245899999999999999999999 7899999999999999 66789999999999866543
Q ss_pred CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCcc
Q 041143 785 EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPA 864 (973)
Q Consensus 785 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (973)
.. .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+.... .+.
T Consensus 243 ~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~------~~~i~~~~------~~~- 307 (373)
T 2x4f_A 243 EK--LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAET------LNNILACR------WDL- 307 (373)
T ss_dssp CB--CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHTC------CCS-
T ss_pred cc--cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhcc------CCC-
Confidence 32 3345799999999999988999999999999999999999999987653321 11111100 000
Q ss_pred ccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 865 LEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 865 l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
. ..........+.+++.+|++.||++||++.|+++ ++++.
T Consensus 308 -~-~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~--hp~~~ 347 (373)
T 2x4f_A 308 -E-DEEFQDISEEAKEFISKLLIKEKSWRISASEALK--HPWLS 347 (373)
T ss_dssp -C-SGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--SHHHH
T ss_pred -C-hhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc--CcCcC
Confidence 0 0000112245789999999999999999999998 55554
No 117
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2e-39 Score=359.56 Aligned_cols=255 Identities=25% Similarity=0.385 Sum_probs=197.4
Q ss_pred hcCccccCcccccCccEEEEEEE----CCCCEEEEEEeecCCC--ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL----EDGTKIAVKRMEAGVT--TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~----~~g~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
.++|...+.||+|+||.||+|+. .+|+.||+|+++.... .......+.+|++++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 36899999999999999999987 4789999999975422 22345568899999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++|+|.+++... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~ 167 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLERE-----GIFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGL 167 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred EEEEEeCCCCCcHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCc
Confidence 99999999999999999652 45889999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+...
T Consensus 168 ~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~------~~~i~~~---- 236 (327)
T 3a62_A 168 CKESIHDG-TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKT------IDKILKC---- 236 (327)
T ss_dssp C-----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHHHHHT----
T ss_pred ccccccCC-ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhC----
Confidence 98543222 223456799999999999999999999999999999999999999987653221 1111111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~~L~~~~~ 908 (973)
...... .....+.+++.+|++.||++|| ++.|+++ +++++
T Consensus 237 ------~~~~p~---~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~--hp~f~ 281 (327)
T 3a62_A 237 ------KLNLPP---YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA--HPFFR 281 (327)
T ss_dssp ------CCCCCT---TSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH--SGGGS
T ss_pred ------CCCCCC---CCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc--CCccc
Confidence 111000 1124577999999999999999 6777777 55554
No 118
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=2.2e-39 Score=351.53 Aligned_cols=259 Identities=24% Similarity=0.360 Sum_probs=206.4
Q ss_pred hcCccccCcccccCccEEEEEEECC----CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED----GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.++|...+.||+|+||.||+|.+.. +..||||+++.. ......+.+.+|++++++++||||+++++++.+ +..+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKD-CTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTT-SCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccc-cCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 4678899999999999999997643 235999998764 245566789999999999999999999999765 4568
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++
T Consensus 89 ~v~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~ 161 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERN----KNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSR 161 (281)
T ss_dssp EEEECCTTCBHHHHHHHH----TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGG
T ss_pred EEEecCCCCCHHHHHHhc----cccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCc
Confidence 999999999999999652 245899999999999999999999 8899999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
..............+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+... .+ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~---~~---~------- 228 (281)
T 3cc6_A 162 YIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIG---VL---E------- 228 (281)
T ss_dssp CC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHH---HH---H-------
T ss_pred ccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHH---HH---h-------
Confidence 665443333344567889999999998999999999999999999998 999997655433211 11 0
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
........ ......+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 229 ~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 229 KGDRLPKP-----DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp HTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCC-----CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 00000000 01124478999999999999999999999999988764
No 119
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.4e-38 Score=348.05 Aligned_cols=269 Identities=21% Similarity=0.276 Sum_probs=210.2
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEE-EeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYS-IEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|+. .+|+.||||++...... +.+.+|+++++.++|++++..++++ ...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC----CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch----hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEE
Confidence 46899999999999999999986 57899999998754322 3588999999999988877666655 567788999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGla 778 (973)
|||+ +|+|.+++... ...+++.++..++.||+.||+||| +++|+||||||+||++ +.++.+||+|||++
T Consensus 84 ~e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~ 155 (296)
T 3uzp_A 84 MELL-GPSLEDLFNFC----SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155 (296)
T ss_dssp EECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred EEec-CCCHHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCc
Confidence 9999 99999999642 246899999999999999999999 8899999999999999 48899999999999
Q ss_pred ccCCCCCcc------eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh
Q 041143 779 KLAPDGEKS------VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS 852 (973)
Q Consensus 779 ~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 852 (973)
+........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 235 (296)
T 3uzp_A 156 KKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKM 235 (296)
T ss_dssp EECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhccccc
Confidence 865443221 12446799999999999999999999999999999999999999986543221111111111000
Q ss_pred chhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCC
Q 041143 853 SKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITD 915 (973)
Q Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~ 915 (973)
.... ..+.+. ....+.+++.+|++.||++||++.+|++.|+.+.++.....+
T Consensus 236 -~~~~-~~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~ 287 (296)
T 3uzp_A 236 -STPI-EVLCKG---------YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYD 287 (296)
T ss_dssp -HSCH-HHHTTT---------SCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCSS
T ss_pred -CCch-HHHHhh---------CCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCccc
Confidence 0000 000111 123478999999999999999999999999999887655443
No 120
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=7.1e-39 Score=350.34 Aligned_cols=269 Identities=21% Similarity=0.277 Sum_probs=206.5
Q ss_pred HHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEE-EeCCeEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYS-IEGNERL 699 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~ 699 (973)
...++|...+.||+|+||.||+|+. .+++.||||++.... ..+.+.+|+++++.++|++++..++++ ...+..+
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT----KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc----cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 3457899999999999999999986 568899999875432 223578899999999988877776665 5677889
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeecc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFG 776 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfG 776 (973)
+||||+ +|+|.+++... ...+++.++..++.||+.||+||| +++|+||||||+||++ +.++.+||+|||
T Consensus 82 lv~e~~-~~~L~~~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg 153 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFC----SRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFG 153 (296)
T ss_dssp EEEECC-CCBHHHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCT
T ss_pred EEEEcc-CCCHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCc
Confidence 999999 99999998642 246899999999999999999999 7899999999999999 788999999999
Q ss_pred ccccCCCCCc------ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 777 LVKLAPDGEK------SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 777 la~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+...
T Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 233 (296)
T 4hgt_A 154 LAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEK 233 (296)
T ss_dssp TCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHH
T ss_pred cceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcc
Confidence 9986544322 1223467999999999999999999999999999999999999999865433221111111110
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCC
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPI 913 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~ 913 (973)
.. .... ..+... ....+.+++.+|++.||++||++.+|++.|+.+.++....
T Consensus 234 ~~-~~~~-~~~~~~---------~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~ 285 (296)
T 4hgt_A 234 KM-STPI-EVLCKG---------YPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFS 285 (296)
T ss_dssp HH-HSCH-HHHTTT---------SCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cc-cchh-hhhhcc---------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 00 0000 000011 1235789999999999999999999999999998876543
No 121
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=366.29 Aligned_cols=255 Identities=17% Similarity=0.197 Sum_probs=209.1
Q ss_pred hcCccccCcccccCccEEEEEE------ECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC---CCceeeeeeEEEe
Q 041143 624 TQNFAQENELGRGGFGTVYKGE------LEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR---HRHLVSLLGYSIE 694 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~------~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~ 694 (973)
.++|...+.||+|+||.||+|. ..+++.||||+++.. . ..++.+|++++++++ |+||+++++++..
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--N---PWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC--C---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--C---hhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 4678899999999999999994 456889999998653 2 346788888888887 9999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC--------
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD-------- 766 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~-------- 766 (973)
.+..++||||+++|+|.+++..........++|..++.|+.||++||+||| +++||||||||+|||++.
T Consensus 139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC---
T ss_pred CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcccc
Confidence 999999999999999999998765555577999999999999999999999 889999999999999998
Q ss_pred ---CCCEEEeeccccccCC-CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHH
Q 041143 767 ---DYRAKVSDFGLVKLAP-DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRY 842 (973)
Q Consensus 767 ---~~~~kl~DfGla~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 842 (973)
++.+||+|||+|+... ..........+||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~--- 292 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE--- 292 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE---
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc---
Confidence 8999999999997432 222334556789999999999999999999999999999999999999986432210
Q ss_pred HHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCC-CCHhHHHHHHHHhhhh
Q 041143 843 LAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHR-PDMGHVVNVLSPLVEK 909 (973)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~R-Ps~~~v~~~L~~~~~~ 909 (973)
.. +...+... . ....+.+++..|++.+|.+| |+++++.+.|+.+.++
T Consensus 293 ------------~~----~~~~~~~~-~---~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 293 ------------CK----PEGLFRRL-P---HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp ------------EE----ECSCCTTC-S---SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred ------------ee----echhcccc-C---cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 00 11111101 1 12346688999999999998 5888899999988875
No 122
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-39 Score=363.46 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=208.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +|+.||+|++... .......+.+|++++++++||||+++++++.+.+..++||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 127 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP--YPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL 127 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc--chhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence 468999999999999999999875 6899999998754 3445567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC--CCCEEEeecccccc
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD--DYRAKVSDFGLVKL 780 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~--~~~~kl~DfGla~~ 780 (973)
||+++|+|.+++.. ....+++.++..++.||+.||+||| +++|+||||||+|||++. ++.+||+|||+++.
T Consensus 128 E~~~gg~L~~~l~~----~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~ 200 (387)
T 1kob_A 128 EFLSGGELFDRIAA----EDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATK 200 (387)
T ss_dssp ECCCCCBHHHHTTC----TTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEE
T ss_pred EcCCCCcHHHHHHh----hcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEeccccee
Confidence 99999999998854 1246899999999999999999999 789999999999999974 47899999999986
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+..... .
T Consensus 201 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~------~~~i~~~~~----~ 268 (387)
T 1kob_A 201 LNPDE--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET------LQNVKRCDW----E 268 (387)
T ss_dssp CCTTS--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHHCCC----C
T ss_pred cCCCc--ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHH------HHHHHhCCC----C
Confidence 65432 23345799999999999999999999999999999999999999987653221 111111000 0
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+++.. .......+.+++.+|++.||++||++.|+++ +++++
T Consensus 269 ~~~~~-----~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~--hp~~~ 309 (387)
T 1kob_A 269 FDEDA-----FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE--HPWLK 309 (387)
T ss_dssp CCSST-----TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT--STTTS
T ss_pred CCccc-----cccCCHHHHHHHHHHcCCChhHCcCHHHHhh--Ccccc
Confidence 11110 0112245789999999999999999999998 55543
No 123
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.6e-39 Score=358.04 Aligned_cols=255 Identities=23% Similarity=0.363 Sum_probs=196.8
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe----
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE---- 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 697 (973)
.++|...+.||+|+||.||+|+. .+++.||||+++.... .......+.+|++++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 36899999999999999999986 5689999999976532 34556789999999999999999999999876543
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 162 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE-----GPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGI 162 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSC
T ss_pred cEEEEecCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccC
Confidence 49999999999999999652 46899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCc--ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 778 VKLAPDGEK--SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 778 a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.. ........
T Consensus 163 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~------~~~~~~~~ 236 (311)
T 3ork_A 163 ARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA------YQHVREDP 236 (311)
T ss_dssp C------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH------HHHHHCCC
T ss_pred cccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH------HHHhcCCC
Confidence 986543322 1223457999999999999999999999999999999999999999876543211 11111000
Q ss_pred HHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 856 KFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
..+... .......+.+++.+|++.||++||++.++++
T Consensus 237 -----~~~~~~----~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 237 -----IPPSAR----HEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp -----CCHHHH----STTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred -----CCcccc----cCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 000000 0011245779999999999999998777665
No 124
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=5.1e-40 Score=360.62 Aligned_cols=271 Identities=23% Similarity=0.392 Sum_probs=206.0
Q ss_pred cCccccCcccccCccEEEEEEE-----CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC--Ce
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-----EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG--NE 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 697 (973)
+.|+..+.||+|+||.||+|++ .+++.||||+++... .....+.+.+|++++++++||||+++++++... ..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES-GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccc-cchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 4688889999999999999984 368899999987542 233456789999999999999999999999876 66
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++|+|.+++... ...+++.+++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~ 172 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKN----KNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGL 172 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHH----TTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTT
T ss_pred EEEEEEeCCCCcHHHHHHhc----cccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccc
Confidence 89999999999999999652 245899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCc--ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh--hc
Q 041143 778 VKLAPDGEK--SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK--SS 853 (973)
Q Consensus 778 a~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~--~~ 853 (973)
++....... .......||..|+|||++.+..++.++|||||||++|||++|+.|+....... ........ ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~~~~~~ 248 (302)
T 4e5w_A 173 TKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALF----LKMIGPTHGQMT 248 (302)
T ss_dssp CEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH----HHHHCSCCGGGH
T ss_pred cccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHH----hhccCCcccccC
Confidence 986654432 22334578899999999999999999999999999999999999864321100 00000000 00
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+...+..... ..........+.+++.+|++.||.+||++.|+++.|+.+++
T Consensus 249 ~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll~ 302 (302)
T 4e5w_A 249 VTRLVNTLKEGKR-LPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALLK 302 (302)
T ss_dssp HHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCC-CCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhC
Confidence 0000111100000 00111223458899999999999999999999999998753
No 125
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-39 Score=355.50 Aligned_cols=263 Identities=22% Similarity=0.309 Sum_probs=201.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|... +++.||||++..... .....+.+.+|+.++++++||||+++++++...+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 478999999999999999999875 688999999875422 344457899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++++|.+++... ..+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 113 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 184 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQ-----GPLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASAT 184 (309)
T ss_dssp EECCCCEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC----
T ss_pred EEecCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccc
Confidence 9999999999999752 46899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
............||+.|+|||++.+..++.++||||||+++|||++|+.||....... +.. .+.. ........
T Consensus 185 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~---~~~~-~~~~~~~~ 257 (309)
T 2h34_A 185 TDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSV---MGA---HINQ-AIPRPSTV 257 (309)
T ss_dssp ------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHH---HHH---HHHS-CCCCGGGT
T ss_pred cccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHH---HHH---Hhcc-CCCCcccc
Confidence 5443333445679999999999999999999999999999999999999998653221 110 1110 00000011
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCC-CHhHHHHHHHHhhhhc
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRP-DMGHVVNVLSPLVEKW 910 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-s~~~v~~~L~~~~~~~ 910 (973)
.+ .....+.+++.+|++.||++|| ++.++++.|+.+....
T Consensus 258 ~~---------~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 258 RP---------GIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp ST---------TCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred CC---------CCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 11 1123477999999999999999 9999999999886643
No 126
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-39 Score=366.70 Aligned_cols=264 Identities=22% Similarity=0.311 Sum_probs=206.8
Q ss_pred HHHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-----CCceeeeeeEEEe
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-----HRHLVSLLGYSIE 694 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~~~~~~ 694 (973)
....++|...+.||+|+||.||+|+. .+++.||||+++. .....+.+..|+++++.++ |||||++++++..
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~ 107 (360)
T 3llt_A 31 MLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN---IKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY 107 (360)
T ss_dssp CEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE
T ss_pred eEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc---chhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE
Confidence 34457899999999999999999987 4689999999864 3455667888999999996 9999999999999
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC--------
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD-------- 766 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~-------- 766 (973)
.+..++||||+ +++|.+++.... ...+++.++..++.||+.||+||| +++|+||||||+|||++.
T Consensus 108 ~~~~~lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~~ 180 (360)
T 3llt_A 108 YDHMCLIFEPL-GPSLYEIITRNN---YNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKSLI 180 (360)
T ss_dssp TTEEEEEECCC-CCBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEEEE
T ss_pred CCeeEEEEcCC-CCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccccccc
Confidence 99999999999 999999997622 245899999999999999999999 889999999999999975
Q ss_pred -----------------CCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCC
Q 041143 767 -----------------DYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGL 829 (973)
Q Consensus 767 -----------------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~ 829 (973)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~ 256 (360)
T 3llt_A 181 TVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGS 256 (360)
T ss_dssp EEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred chhcccccccccccccCCCCEEEEeccCceecCCC----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCC
Confidence 789999999999865432 23467999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhc--hhHHHhhc--------Cc-c----ccCCcccHH---------------HHHHHH
Q 041143 830 AALDEERPEESRYLAEWFWRIKSS--KEKFKAAI--------DP-A----LEVNEETFE---------------SISIVA 879 (973)
Q Consensus 830 ~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~-~----l~~~~~~~~---------------~~~~~~ 879 (973)
.||......+...... ..... ........ +. . ......... ....+.
T Consensus 257 ~pf~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (360)
T 3llt_A 257 LLFRTHEHMEHLAMME---SIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFC 333 (360)
T ss_dssp CSCCCSSHHHHHHHHH---HHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHH
T ss_pred CCCCCCcHHHHHHHHH---HhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHH
Confidence 9998765443221111 11000 00000000 00 0 000000000 014577
Q ss_pred HHHHHhhccCCCCCCCHhHHHH
Q 041143 880 ELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 880 ~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
+++.+||+.||++|||++|+++
T Consensus 334 ~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 334 DFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHhcCChhhCCCHHHHhc
Confidence 9999999999999999999986
No 127
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=3.2e-39 Score=352.17 Aligned_cols=259 Identities=27% Similarity=0.368 Sum_probs=207.0
Q ss_pred hcCccccC-cccccCccEEEEEEEC---CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 624 TQNFAQEN-ELGRGGFGTVYKGELE---DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 624 ~~~~~~~~-~lG~G~fg~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
.++|...+ .||+|+||.||+|.+. +++.||||+++.........+.+.+|++++++++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 35677777 9999999999999642 467899999976544455577899999999999999999999999 667789
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 94 lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 165 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQ-----NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSK 165 (291)
T ss_dssp EEEECCTTEEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEeCCCCCHHHHHHh-----CcCCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcce
Confidence 99999999999999965 245899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcce--ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 780 LAPDGEKSV--VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 780 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
......... .....||+.|+|||.+.+..++.++||||||+++|||++ |+.||......+.. . .+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~---~---~~~----- 234 (291)
T 1xbb_A 166 ALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVT---A---MLE----- 234 (291)
T ss_dssp ECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHH---H---HHH-----
T ss_pred eeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH---H---HHH-----
Confidence 665433322 223456789999999998889999999999999999999 99999876543211 1 111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....+... ......+.+++.+|++.||++||++.+|++.|+.+...
T Consensus 235 --~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 235 --KGERMGCP-----AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp --TTCCCCCC-----TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred --cCCCCCCC-----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 11111111 11234588999999999999999999999999998764
No 128
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=8e-39 Score=357.32 Aligned_cols=254 Identities=26% Similarity=0.433 Sum_probs=205.8
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.+.|...+.||+|+||.||+|+. .+|+.||||++..... .....+.+.+|++++++++||||+++++++...+..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 35688999999999999999986 5789999999975432 334457899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+. |+|.+++... ...+++.++..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++..
T Consensus 133 ~e~~~-g~l~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~ 204 (348)
T 1u5q_A 133 MEYCL-GSASDLLEVH----KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM 204 (348)
T ss_dssp EECCS-EEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred EecCC-CCHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence 99996 7888887542 256899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccc---cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAV---MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
... ....||+.|+|||++. ...++.++|||||||++|||++|+.||........ ...+..
T Consensus 205 ~~~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~------~~~~~~------ 267 (348)
T 1u5q_A 205 APA-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA------LYHIAQ------ 267 (348)
T ss_dssp SSB-----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHH------
T ss_pred CCC-----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHHh------
Confidence 432 3457999999999984 56789999999999999999999999976653221 111111
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...+...... ....+.+++.+|++.||++||++.++++ +.++..
T Consensus 268 -~~~~~~~~~~----~~~~l~~li~~~l~~dP~~Rps~~~ll~--h~~~~~ 311 (348)
T 1u5q_A 268 -NESPALQSGH----WSEYFRNFVDSCLQKIPQDRPTSEVLLK--HRFVLR 311 (348)
T ss_dssp -SCCCCCCCTT----SCHHHHHHHHHHTCSSGGGSCCHHHHTT--CHHHHS
T ss_pred -cCCCCCCCCC----CCHHHHHHHHHHcccChhhCcCHHHHhh--Chhhhc
Confidence 1111111111 1234779999999999999999999998 555543
No 129
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=2.4e-39 Score=358.46 Aligned_cols=254 Identities=23% Similarity=0.310 Sum_probs=183.5
Q ss_pred cCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCCeEEEEEEecCC
Q 041143 630 ENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGNERLLVYEYMPH 707 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~ 707 (973)
.+.||+|+||.||+|... +|+.||||++... ....+.+|+++++.++ ||||+++++++.+....++||||+++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~ 90 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG 90 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh-----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence 478999999999999875 6899999998643 2356789999999997 99999999999999999999999999
Q ss_pred CCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC---CEEEeeccccccCCCC
Q 041143 708 GALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY---RAKVSDFGLVKLAPDG 784 (973)
Q Consensus 708 g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~---~~kl~DfGla~~~~~~ 784 (973)
|+|.+++.. ...+++.++..++.||+.||+||| +++|+||||||+||+++.++ .+||+|||+++.....
T Consensus 91 ~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 162 (325)
T 3kn6_A 91 GELFERIKK-----KKHFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD 162 (325)
T ss_dssp CBHHHHHHH-----CSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred CcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence 999999965 256899999999999999999999 88999999999999997765 8999999999865443
Q ss_pred CcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhH-HHHHHHHHHHhhchhHHHhhcCc
Q 041143 785 EKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEES-RYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 785 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ ....+.. ..+...
T Consensus 163 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~----------~~i~~~ 231 (325)
T 3kn6_A 163 NQ-PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIM----------KKIKKG 231 (325)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHH----------HHHTTT
T ss_pred CC-cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHH----------HHHHcC
Confidence 22 23456789999999999999999999999999999999999999986543211 0111111 111122
Q ss_pred cccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 864 ALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 864 ~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
........ ......+.+++.+|++.||++||++.|+++ +++++.
T Consensus 232 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~--h~w~~~ 276 (325)
T 3kn6_A 232 DFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY--NEWLQD 276 (325)
T ss_dssp CCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT--CGGGCT
T ss_pred CCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc--Chhhcc
Confidence 22111111 122345789999999999999999999987 666654
No 130
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.8e-39 Score=350.06 Aligned_cols=260 Identities=26% Similarity=0.384 Sum_probs=210.8
Q ss_pred cCccccC-cccccCccEEEEEEEC---CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 625 QNFAQEN-ELGRGGFGTVYKGELE---DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 625 ~~~~~~~-~lG~G~fg~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
++|...+ .||+|+||.||+|.+. ++..||||+++.. ......+.+.+|++++++++||||+++++++ ..+..++
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG-TEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCc-cchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 4555655 8999999999999754 5788999999764 3455677899999999999999999999999 5567899
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+++|+|.+++.. ....+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 87 v~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~ 159 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVG----KREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKA 159 (287)
T ss_dssp EEECCTTEEHHHHHTT----CTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEeCCCCCHHHHHHh----CCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceee
Confidence 9999999999999864 2356899999999999999999999 78999999999999999999999999999986
Q ss_pred CCCCCcce--ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 781 APDGEKSV--VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 781 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
........ .....||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. . .+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~---~---~i~~----- 228 (287)
T 1u59_A 160 LGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVM---A---FIEQ----- 228 (287)
T ss_dssp CTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHH---H---HHHT-----
T ss_pred eccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHH---H---HHhc-----
Confidence 64433221 223457899999999998899999999999999999999 99999876543211 1 1111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...+... ......+.+++.+|++.||++||++.++++.|+.+.....
T Consensus 229 --~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 275 (287)
T 1u59_A 229 --GKRMECP-----PECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA 275 (287)
T ss_dssp --TCCCCCC-----TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred --CCcCCCC-----CCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 0111111 1122457899999999999999999999999999987644
No 131
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.3e-39 Score=362.73 Aligned_cols=265 Identities=27% Similarity=0.388 Sum_probs=212.9
Q ss_pred hcCccccCcccccCccEEEEEEECC------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 696 (973)
.++|...+.||+|+||.||+|.... +..||||+++... .....+.+.+|+++++++ +||||+++++++...+
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTA-HADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhccccc-ChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 4688999999999999999998642 2479999997642 445567899999999999 8999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhc---------cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKL---------QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD 767 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~---------~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~ 767 (973)
..++||||+++|+|.+++...... ....+++..++.++.||+.||+||| +++|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCC
Confidence 999999999999999999764321 1245799999999999999999999 7899999999999999999
Q ss_pred CCEEEeeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHH
Q 041143 768 YRAKVSDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAE 845 (973)
Q Consensus 768 ~~~kl~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 845 (973)
+.+||+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||......... ..
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~--~~ 278 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKF--YK 278 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHH--HH
T ss_pred CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHH--HH
Confidence 999999999998543322 222334567889999999999999999999999999999999 99999865432211 11
Q ss_pred HHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 846 WFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. ......... ......+.+++.+|++.||.+||++.||++.|+.+.++
T Consensus 279 ----~~------~~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 327 (333)
T 2i1m_A 279 ----LV------KDGYQMAQP-----AFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 327 (333)
T ss_dssp ----HH------HHTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----HH------hcCCCCCCC-----CCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence 00 111111111 01124578999999999999999999999999988764
No 132
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.6e-39 Score=362.77 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=203.2
Q ss_pred HhcCccccCcccccCccEEEEEEECC-CCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELED-GTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 699 (973)
..++|...+.||+|+||.||+|+... |+.||||+++.... .....+.+..|..++..+ +||||+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 34789999999999999999998864 78999999865311 112345688899999988 7999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++
T Consensus 98 lv~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~ 169 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCK 169 (353)
T ss_dssp EEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccc
Confidence 999999999999999652 45899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
...... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+...
T Consensus 170 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~------~~~i~~~------ 236 (353)
T 2i0e_A 170 ENIWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDEL------FQSIMEH------ 236 (353)
T ss_dssp CCCCTT-CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC------
T ss_pred ccccCC-cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHH------HHHHHhC------
Confidence 543222 223456899999999999999999999999999999999999999987653221 1111111
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH-----hHHHH
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDM-----GHVVN 901 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~-----~~v~~ 901 (973)
.+.... .....+.+++.+|++.||++||++ .||.+
T Consensus 237 ----~~~~p~---~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 237 ----NVAYPK---SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp ----CCCCCT---TSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred ----CCCCCC---CCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 111111 112457799999999999999964 66665
No 133
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4.3e-39 Score=348.11 Aligned_cols=253 Identities=26% Similarity=0.378 Sum_probs=184.7
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|+..+.||+|+||.||+|+. .+|+.||+|++..... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 5799999999999999999986 4689999999875432 2233567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+ +++|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||++++++.+||+|||+++...
T Consensus 93 e~~-~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 163 (275)
T 2eue_A 93 EYA-GNELFDYIVQ-----RDKMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMT 163 (275)
T ss_dssp ECC-CEEHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC----
T ss_pred hhc-CCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceecc
Confidence 999 7888888754 246899999999999999999999 7899999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... ......||+.|+|||.+.+..+ +.++|||||||++|||++|+.||........ ...+.....
T Consensus 164 ~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~~~~~~~------ 229 (275)
T 2eue_A 164 DGN--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVL------FKNISNGVY------ 229 (275)
T ss_dssp -------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTCC------
T ss_pred Ccc--cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhCCC------
Confidence 432 2334579999999999987765 7899999999999999999999987653221 111111000
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+. . .....+.+++.+|++.||++|||+.|+++ +++++.
T Consensus 230 --~~~--~---~~~~~~~~li~~~l~~dP~~Rps~~e~l~--h~~f~~ 268 (275)
T 2eue_A 230 --TLP--K---FLSPGAAGLIKRMLIVNPLNRISIHEIMQ--DDWFKV 268 (275)
T ss_dssp --CCC--T---TSCHHHHHHHHHHSCSSGGGSCCHHHHTT--CHHHHT
T ss_pred --CCC--c---cCCHHHHHHHHHHhhcCHhHCCCHHHHhh--CCeecc
Confidence 010 0 11234779999999999999999999998 666553
No 134
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=2.2e-39 Score=359.03 Aligned_cols=266 Identities=27% Similarity=0.436 Sum_probs=213.6
Q ss_pred HHhcCccccCcccccCccEEEEEEEC------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG 695 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 695 (973)
...++|...+.||+|+||.||+|... +++.||||++... ........+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 100 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA-ASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG 100 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT-SCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc-cCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccC
Confidence 34578999999999999999999764 3678999998754 3445566799999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhc-----cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCE
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKL-----QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRA 770 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~-----~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~ 770 (973)
+..++||||+++|+|.+++...... ....+++..++.++.||+.||+||| +++|+||||||+||+++.++.+
T Consensus 101 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 101 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCE
T ss_pred CccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeE
Confidence 9999999999999999999764321 1245799999999999999999999 7899999999999999999999
Q ss_pred EEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHH
Q 041143 771 KVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 771 kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 848 (973)
||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. .
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~------~ 251 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVL------R 251 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHH------H
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHH------H
Confidence 9999999985433221 12233467899999999999999999999999999999999 89999876532211 1
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+.. .... .........+.+++.+|++.||++||++.|+++.|+...+.
T Consensus 252 ~~~~----------~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~ 300 (322)
T 1p4o_A 252 FVME----------GGLL--DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 300 (322)
T ss_dssp HHHT----------TCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred HHHc----------CCcC--CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence 1111 0000 00111224578999999999999999999999999887653
No 135
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-40 Score=364.34 Aligned_cols=253 Identities=25% Similarity=0.378 Sum_probs=204.9
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCC-hHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTT-TKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|.. .+|+.||||++...... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 6899999999999999999987 57899999998643111 112346889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+ +|+|.+++... ..+++.++..++.||+.||+||| +.+|+||||||+|||+++++.+||+|||+++...
T Consensus 89 E~~-~g~l~~~l~~~-----~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~ 159 (336)
T 3h4j_B 89 EYA-GGELFDYIVEK-----KRMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMT 159 (336)
T ss_dssp CCC-CEEHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTT
T ss_pred ECC-CCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceecc
Confidence 999 78999988652 46899999999999999999999 7799999999999999999999999999998655
Q ss_pred CCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... .....+||+.|+|||++.+..+ +.++|||||||++|||++|+.||........ ...+.
T Consensus 160 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~----------------~~~i~ 221 (336)
T 3h4j_B 160 DGN--FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL----------------FKKVN 221 (336)
T ss_dssp TSB--TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC----------------BCCCC
T ss_pred CCc--ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH----------------HHHHH
Confidence 432 2344679999999999988776 6899999999999999999999976542211 00111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... ......+.+++.+|++.||.+|||+.|+++ ++++..
T Consensus 222 ~~~~~~p---~~~s~~~~~li~~~L~~dP~~Rpt~~eil~--hp~~~~ 264 (336)
T 3h4j_B 222 SCVYVMP---DFLSPGAQSLIRRMIVADPMQRITIQEIRR--DPWFNV 264 (336)
T ss_dssp SSCCCCC---TTSCHHHHHHHHTTSCSSGGGSCCHHHHTT--CHHHHT
T ss_pred cCCCCCc---ccCCHHHHHHHHHHcCCChhHCcCHHHHHh--Chhhcc
Confidence 1111101 111234779999999999999999999998 666653
No 136
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.3e-39 Score=359.77 Aligned_cols=274 Identities=25% Similarity=0.383 Sum_probs=217.3
Q ss_pred cHHHHHHHhcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeee
Q 041143 616 SVQVLRKVTQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSL 688 (973)
Q Consensus 616 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l 688 (973)
.........++|...+.||+|+||.||+|++ .+++.||||+++.. ......+.+.+|++++.++ +||||+++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG-ATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT-CCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC-CCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 3344445568999999999999999999974 34688999999764 3445567899999999999 79999999
Q ss_pred eeEEEeCC-eEEEEEEecCCCCHHHHHHhhhhcc-----------CCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeecc
Q 041143 689 LGYSIEGN-ERLLVYEYMPHGALSRHLFRWEKLQ-----------LKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRD 756 (973)
Q Consensus 689 ~~~~~~~~-~~~lV~e~~~~g~L~~~l~~~~~~~-----------~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~D 756 (973)
++++...+ ..++||||+++|+|.+++....... ...+++..+..++.||++||+||| +++|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence 99988755 4899999999999999997633210 123889999999999999999999 78999999
Q ss_pred CCCCcEEECCCCCEEEeeccccccCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCC
Q 041143 757 LKSSNILLDDDYRAKVSDFGLVKLAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDE 834 (973)
Q Consensus 757 ikp~Nill~~~~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~ 834 (973)
|||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||..
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~ 253 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999986543322 23344568999999999999999999999999999999998 9999976
Q ss_pred CChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 835 ERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
....+. +.. ... ........ . .....+.+++.+|++.||.+||++.||++.|+.+.+..
T Consensus 254 ~~~~~~--~~~---~~~-------~~~~~~~~-~----~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 312 (316)
T 2xir_A 254 VKIDEE--FCR---RLK-------EGTRMRAP-D----YTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 312 (316)
T ss_dssp CCCSHH--HHH---HHH-------HTCCCCCC-T----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cchhHH--HHH---Hhc-------cCccCCCC-C----CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 553221 111 111 11111111 0 11235789999999999999999999999999998754
No 137
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=361.75 Aligned_cols=256 Identities=27% Similarity=0.367 Sum_probs=192.5
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV----DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC--------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch----hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 4578999999999999999999886 57899999997542 345688999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl~DfGla 778 (973)
|||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 127 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a 198 (349)
T 2w4o_A 127 LELVTGGELFDRIVE-----KGYYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLS 198 (349)
T ss_dssp ECCCCSCBHHHHHTT-----CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC--
T ss_pred EEeCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccc
Confidence 999999999999864 245899999999999999999999 789999999999999975 889999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........ . ...+.....
T Consensus 199 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~---~~~i~~~~~--- 268 (349)
T 2w4o_A 199 KIVEHQV--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQF--M---FRRILNCEY--- 268 (349)
T ss_dssp ----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHH--H---HHHHHTTCC---
T ss_pred cccCccc--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHH--H---HHHHHhCCC---
Confidence 8654322 23446799999999999999999999999999999999999999976553321 1 111111000
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
....+. .......+.+++.+|++.||++||++.|+++ ++++.
T Consensus 269 ~~~~~~------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~~~ 310 (349)
T 2w4o_A 269 YFISPW------WDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ--HPWVT 310 (349)
T ss_dssp CCCTTT------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--STTTT
T ss_pred ccCCch------hhhCCHHHHHHHHHHccCChhhCcCHHHHhc--CcccC
Confidence 000000 0112245789999999999999999999998 55554
No 138
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=2.1e-39 Score=359.93 Aligned_cols=274 Identities=28% Similarity=0.385 Sum_probs=210.2
Q ss_pred cCccccCcccccCccEEEEEEE-----CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe--CCe
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-----EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE--GNE 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~ 697 (973)
++|+..+.||+|+||.||+|++ .+++.||||++... .....+.+.+|++++++++||||+++++++.. ...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 100 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS--GPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQS 100 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC--CHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCce
Confidence 5788999999999999999984 36889999998754 55666789999999999999999999999874 556
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++|+|.+++.... ..+++.+++.++.|++.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 173 (327)
T 3lxl_A 101 LRLVMEYLPSGCLRDFLQRHR----ARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGL 173 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGG
T ss_pred EEEEEeecCCCCHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEccccc
Confidence 899999999999999997532 35899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcc--eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 778 VKLAPDGEKS--VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 778 a~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
++........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||........... .+... .....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~-~~~~~-~~~~~ 251 (327)
T 3lxl_A 174 AKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMM-GCERD-VPALS 251 (327)
T ss_dssp CEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHC-C-----CCHHH
T ss_pred ceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhc-ccccc-cccHH
Confidence 9866543322 22345688899999999999999999999999999999999999865332110000 00000 00000
Q ss_pred HHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 856 KFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
.....+..... ..........+.+++.+|++.||++||++.||++.|+.+....
T Consensus 252 ~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 252 RLLELLEEGQR-LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HHHHHHHTTCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred HHHHHhhcccC-CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 11111111111 0111122345889999999999999999999999999887654
No 139
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.8e-39 Score=364.94 Aligned_cols=249 Identities=27% Similarity=0.342 Sum_probs=193.7
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHH-HHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAV-LSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
++|...+.||+|+||.||+|+.+ +++.||||+++.... .....+.+.+|..+ ++.++|||||++++++.+.+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 67999999999999999999876 588999999975422 23344566777776 4678999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++..
T Consensus 118 ~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~ 189 (373)
T 2r5t_A 118 LDYINGGELFYHLQRE-----RCFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKEN 189 (373)
T ss_dssp EECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGG
T ss_pred EeCCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCcccccc
Confidence 9999999999999652 45789999999999999999999 889999999999999999999999999999853
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +..+..
T Consensus 190 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~------~~~i~~--------- 253 (373)
T 2r5t_A 190 IEHN-STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM------YDNILN--------- 253 (373)
T ss_dssp BCCC-CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHH------HHHHHH---------
T ss_pred ccCC-CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHH------HHHHHh---------
Confidence 3222 234457899999999999999999999999999999999999999987553221 111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
..+.... .....+.+++.+|++.||.+||++.+.++
T Consensus 254 -~~~~~~~---~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 254 -KPLQLKP---NITNSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp -SCCCCCS---SSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred -cccCCCC---CCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 1111111 11234779999999999999999865443
No 140
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.1e-39 Score=362.88 Aligned_cols=270 Identities=22% Similarity=0.271 Sum_probs=206.5
Q ss_pred HHHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC---CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC
Q 041143 620 LRKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV---TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG 695 (973)
Q Consensus 620 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 695 (973)
+....++|...+.||+|+||.||+|... +++.||+|++.... ......+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 3567789999999999999999999874 68899999986431 1234567899999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhc-----------------------------------cCCCCCHHHHHHHHHHHHHH
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKL-----------------------------------QLKPLSWTRRLSIALDVARG 740 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~-----------------------------------~~~~l~~~~~~~i~~~ia~g 740 (973)
+..++||||+++|+|.+++...... ....+++..+..++.||+.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988531110 01224567788999999999
Q ss_pred HHHHHhhccCCeeeccCCCCcEEECCCC--CEEEeeccccccCCC---CCcceecccccccCccccccccc--CcCCCch
Q 041143 741 MEYLHCLARQTFIHRDLKSSNILLDDDY--RAKVSDFGLVKLAPD---GEKSVVTRLAGTFGYLAPEYAVM--GKITTKA 813 (973)
Q Consensus 741 l~~LH~~~~~~ivH~Dikp~Nill~~~~--~~kl~DfGla~~~~~---~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 813 (973)
|+||| +.+|+||||||+||+++.++ .+||+|||+++.... ..........||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999 78999999999999998776 899999999985432 11222345679999999999875 6789999
Q ss_pred hHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCC-cccHHHHHHHHHHHHHhhccCCCC
Q 041143 814 DVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVN-EETFESISIVAELAGHCTAREPYH 892 (973)
Q Consensus 814 Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~cl~~dP~~ 892 (973)
|||||||++|||++|+.||......+.. ..+.. ...... .........+.+++.+|++.||.+
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~ 321 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADTI------SQVLN----------KKLCFENPNYNVLSPLARDLLSNLLNRNVDE 321 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHHH------HHHHH----------CCCCTTSGGGGGSCHHHHHHHHHHSCSCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHHH------HHHHh----------cccccCCcccccCCHHHHHHHHHHcCCChhH
Confidence 9999999999999999999876543211 11111 111000 011112245779999999999999
Q ss_pred CCCHhHHHHHHHHhhhhc
Q 041143 893 RPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 893 RPs~~~v~~~L~~~~~~~ 910 (973)
||++.|+++ +++++.+
T Consensus 322 Rps~~~~l~--hp~~~~~ 337 (345)
T 3hko_A 322 RFDAMRALQ--HPWISQF 337 (345)
T ss_dssp SCCHHHHHH--SHHHHTT
T ss_pred CCCHHHHhc--ChhhccC
Confidence 999999998 7776654
No 141
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=359.37 Aligned_cols=258 Identities=27% Similarity=0.402 Sum_probs=200.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCC----EEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGT----KIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
++|...+.||+|+||.||+|.+. +++ +||+|.+.... .....+.+.+|+.++++++||||+++++++.... .+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT-SPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCS-SCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecccc-CHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 67899999999999999999864 444 35777775432 3344567899999999999999999999998765 78
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++... ...+++..++.++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++
T Consensus 93 ~v~~~~~~g~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~ 165 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREH----KDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAK 165 (327)
T ss_dssp EEECCCSSCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC--
T ss_pred EEEEecCCCcHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCccee
Confidence 999999999999999752 246899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCc-ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 780 LAPDGEK-SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 780 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+..... .
T Consensus 166 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~------~------ 233 (327)
T 3lzb_A 166 LLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL------E------ 233 (327)
T ss_dssp --------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH------H------
T ss_pred EccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH------H------
Confidence 6543222 22233457889999999999999999999999999999999 99999876544321110 0
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... .......+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 234 -~~~~~~~-----~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 234 -KGERLPQ-----PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -TTCCCCC-----CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred -cCCCCCC-----CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 0000000 111223578999999999999999999999999998753
No 142
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.2e-39 Score=388.95 Aligned_cols=252 Identities=27% Similarity=0.365 Sum_probs=202.3
Q ss_pred CcccccCccEEEEEEEC---CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEecCC
Q 041143 631 NELGRGGFGTVYKGELE---DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPH 707 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~ 707 (973)
+.||+|+||.||+|.+. .++.||||+++.........+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 46789999998765455556789999999999999999999999864 568999999999
Q ss_pred CCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCCc-
Q 041143 708 GALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEK- 786 (973)
Q Consensus 708 g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~- 786 (973)
|+|.+++.. ...+++.+++.|+.||+.||+||| +++|+||||||+|||++.++.+||+|||+++.......
T Consensus 454 g~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~ 525 (635)
T 4fl3_A 454 GPLNKYLQQ-----NRHVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENY 525 (635)
T ss_dssp EEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred CCHHHHHhh-----CCCCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccc
Confidence 999999964 246899999999999999999999 78999999999999999999999999999986544322
Q ss_pred -ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCcc
Q 041143 787 -SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPA 864 (973)
Q Consensus 787 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (973)
.......||+.|+|||++.+..++.++|||||||++|||++ |+.||......+... .+. ......
T Consensus 526 ~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~------~i~-------~~~~~~ 592 (635)
T 4fl3_A 526 YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTA------MLE-------KGERMG 592 (635)
T ss_dssp ---------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHH------HHH-------TTCCCC
T ss_pred cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH------HHH-------cCCCCC
Confidence 22233457889999999999999999999999999999998 999998766432111 111 111111
Q ss_pred ccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 865 LEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 865 l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. ......+.+++..||+.||++||++.+|++.|+.+..+
T Consensus 593 ~p-----~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 632 (635)
T 4fl3_A 593 CP-----AGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 632 (635)
T ss_dssp CC-----TTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred CC-----CCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence 11 11234578999999999999999999999999988764
No 143
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=363.08 Aligned_cols=274 Identities=24% Similarity=0.376 Sum_probs=199.4
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHH--HHhcCCCceeeeeeEEEe-----CCe
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAV--LSKVRHRHLVSLLGYSIE-----GNE 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~~ 697 (973)
++|...+.||+|+||.||+|+. +++.||||++... . ...+..|.++ +..++||||+++++++.. ...
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~--~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---N--RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---G--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---c--hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 6889999999999999999987 4899999998643 1 2334444444 445899999999986543 235
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC---------CeeeccCCCCcEEECCCC
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ---------TFIHRDLKSSNILLDDDY 768 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~---------~ivH~Dikp~Nill~~~~ 768 (973)
.++||||+++|+|.+++.. ...++..+..++.||++||+||| +. +|+||||||+|||++.++
T Consensus 87 ~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~ 157 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSL------HTSDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDG 157 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTS
T ss_pred EEEEEecCCCCcHHHHHhh------cccchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCC
Confidence 6899999999999999965 34589999999999999999999 66 999999999999999999
Q ss_pred CEEEeeccccccCCCCC-------cceecccccccCccccccccc-------CcCCCchhHHhHHHHHHHHHhCCCCCCC
Q 041143 769 RAKVSDFGLVKLAPDGE-------KSVVTRLAGTFGYLAPEYAVM-------GKITTKADVFSYGVVLMELLTGLAALDE 834 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~elltg~~p~~~ 834 (973)
.+||+|||+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.|+..
T Consensus 158 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~ 237 (336)
T 3g2f_A 158 TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP 237 (336)
T ss_dssp CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGST
T ss_pred cEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCC
Confidence 99999999998654321 112234579999999999876 4667899999999999999999777643
Q ss_pred CChhhH-HHHHHHHHHHhhchhHHHh-----hcCccccC-CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 835 ERPEES-RYLAEWFWRIKSSKEKFKA-----AIDPALEV-NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 835 ~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~l~~-~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
...... ................... ...+.+.. ..........+.+++.+||+.||++|||++||++.|+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 238 GESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM 317 (336)
T ss_dssp TSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence 322110 0000000000000000000 11111110 1112234557899999999999999999999999999999
Q ss_pred hhcCCC
Q 041143 908 EKWRPI 913 (973)
Q Consensus 908 ~~~~~~ 913 (973)
..|...
T Consensus 318 ~~~~~~ 323 (336)
T 3g2f_A 318 MIWERN 323 (336)
T ss_dssp HCCCC-
T ss_pred HHHHhc
Confidence 887654
No 144
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.9e-38 Score=346.65 Aligned_cols=256 Identities=24% Similarity=0.394 Sum_probs=210.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|... +++.||+|++.... ......+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 367889999999999999999876 57899999986542 2345667899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++++|.+++.. ...+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 94 ~e~~~~~~L~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 165 (294)
T 2rku_A 94 LELCRRRSLLELHKR-----RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 165 (294)
T ss_dssp EECCTTCBHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceec
Confidence 999999999998865 246899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
..... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+. ...+..
T Consensus 166 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~--------- 229 (294)
T 2rku_A 166 EYDGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLRIKK--------- 229 (294)
T ss_dssp CSTTC-CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHT---------
T ss_pred ccCcc-ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHhh---------
Confidence 43222 23446799999999999988999999999999999999999999987653221 111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... .....+.+++.+|++.||++||++.|+++ +.++..
T Consensus 230 -~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~ll~--~~~~~~ 271 (294)
T 2rku_A 230 -NEYSIPK---HINPVAASLIQKMLQTDPTARPTINELLN--DEFFTS 271 (294)
T ss_dssp -TCCCCCT---TSCHHHHHHHHHHTCSSGGGSCCGGGGGG--SHHHHT
T ss_pred -ccCCCcc---ccCHHHHHHHHHHcccChhhCcCHHHHhh--Chheec
Confidence 1111000 11234779999999999999999999998 566553
No 145
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1.2e-38 Score=367.12 Aligned_cols=283 Identities=23% Similarity=0.288 Sum_probs=207.2
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC-----Ce
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-----NE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 697 (973)
.++|...+.||+|+||.||+|... +|+.||||+++.........+.+.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999875 578999999987656666778899999999999999999999999876 57
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.|+||||+. |+|.+++.. ...+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+
T Consensus 105 ~~lv~e~~~-~~L~~~~~~-----~~~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGl 175 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKT-----PIFLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGL 175 (432)
T ss_dssp EEEEEECCS-EEHHHHHHS-----SCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecCC-cCHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCC
Confidence 899999985 699998854 256899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCc---------------------ceecccccccCccccccc-ccCcCCCchhHHhHHHHHHHHHhCCCCCC--
Q 041143 778 VKLAPDGEK---------------------SVVTRLAGTFGYLAPEYA-VMGKITTKADVFSYGVVLMELLTGLAALD-- 833 (973)
Q Consensus 778 a~~~~~~~~---------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvvl~elltg~~p~~-- 833 (973)
|+....... ...+..+||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~ 255 (432)
T 3n9x_A 176 ARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHIND 255 (432)
T ss_dssp CEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSS
T ss_pred cccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccc
Confidence 986543221 123567899999999986 46679999999999999999998544443
Q ss_pred ---------CCChh---------------hHHHHHHHHHHHhhc---------hhHHHhhc---CccccCC--cccHHHH
Q 041143 834 ---------EERPE---------------ESRYLAEWFWRIKSS---------KEKFKAAI---DPALEVN--EETFESI 875 (973)
Q Consensus 834 ---------~~~~~---------------~~~~~~~~~~~~~~~---------~~~~~~~~---~~~l~~~--~~~~~~~ 875 (973)
+.... ....+...+...... .......+ ....... .......
T Consensus 256 ~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 335 (432)
T 3n9x_A 256 PTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSIS 335 (432)
T ss_dssp GGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSC
T ss_pred cccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCC
Confidence 22110 000110000000000 00000000 0000000 0001123
Q ss_pred HHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCCC
Q 041143 876 SIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDES 917 (973)
Q Consensus 876 ~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~ 917 (973)
..+.+|+.+||+.||++|||+.|+++ +++++.......+.
T Consensus 336 ~~~~dLl~~mL~~dP~~R~ta~e~L~--Hp~f~~~~~~~~e~ 375 (432)
T 3n9x_A 336 DDGINLLESMLKFNPNKRITIDQALD--HPYLKDVRKKKLEN 375 (432)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHT--CGGGTTTCCTTTC-
T ss_pred HHHHHHHHHHhcCCcccCCCHHHHhc--ChhhhhccCcccCc
Confidence 45789999999999999999999999 88888765554443
No 146
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-39 Score=372.61 Aligned_cols=253 Identities=27% Similarity=0.433 Sum_probs=206.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 57889999999999999999875 799999999864311 1123457899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 96 E~~~gg~L~~~l~~-----~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~ 167 (476)
T 2y94_A 96 EYVSGGELFDYICK-----NGRLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 167 (476)
T ss_dssp ECCSSEEHHHHTTS-----SSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred eCCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhcc
Confidence 99999999999854 256899999999999999999999 8899999999999999999999999999998765
Q ss_pred CCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||........ ...+..
T Consensus 168 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~------~~~i~~--------- 230 (476)
T 2y94_A 168 DGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTL------FKKICD--------- 230 (476)
T ss_dssp TTC--CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHH------HHHHHT---------
T ss_pred ccc--cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHH------HHHHhc---------
Confidence 432 2345689999999999988766 6899999999999999999999986553221 111111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
....... .....+.+++.+|++.||++|||+.||++ +++++
T Consensus 231 -~~~~~p~---~~s~~~~~Li~~~L~~dP~~Rpt~~eil~--hp~~~ 271 (476)
T 2y94_A 231 -GIFYTPQ---YLNPSVISLLKHMLQVDPMKRATIKDIRE--HEWFK 271 (476)
T ss_dssp -TCCCCCT---TCCHHHHHHHHHHTCSSTTTSCCHHHHHT--CHHHH
T ss_pred -CCcCCCc---cCCHHHHHHHHHHcCCCchhCcCHHHHHh--CHHhh
Confidence 1111000 11234779999999999999999999998 55544
No 147
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=9.2e-39 Score=357.32 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=198.7
Q ss_pred cCccccCcccccCccEEEEEEEC----CCCEEEEEEeecCCCChH---------HHHHHHHHHHHHHhcCCCceeeeeeE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE----DGTKIAVKRMEAGVTTTK---------ALDEFQSEIAVLSKVRHRHLVSLLGY 691 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vavK~~~~~~~~~~---------~~~~~~~E~~~l~~l~h~niv~l~~~ 691 (973)
++|...+.||+|+||.||+|... ++..+|||++........ ....+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 67899999999999999999875 578899999875422111 11246678899999999999999999
Q ss_pred EEe----CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC
Q 041143 692 SIE----GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD 767 (973)
Q Consensus 692 ~~~----~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~ 767 (973)
+.. ....++||||+ +++|.+++... ..+++.+++.++.||+.||+||| +++|+||||||+|||++.+
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~ 187 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQN-----GTFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYK 187 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGG-----GBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESS
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccC
Confidence 988 67889999999 99999998652 36899999999999999999999 7899999999999999988
Q ss_pred C--CEEEeeccccccCCCCCc------ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhh
Q 041143 768 Y--RAKVSDFGLVKLAPDGEK------SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEE 839 (973)
Q Consensus 768 ~--~~kl~DfGla~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~ 839 (973)
+ .+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 188 ~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~ 267 (345)
T 2v62_A 188 NPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDP 267 (345)
T ss_dssp STTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCH
T ss_pred CCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccccc
Confidence 7 999999999985532211 11244679999999999999999999999999999999999999996432221
Q ss_pred HHHHHHHHHHHhh-chhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 840 SRYLAEWFWRIKS-SKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 840 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.. .......... ....+...... . .....+.+++.+|++.||++||++.+|++.|+.+..
T Consensus 268 ~~-~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 268 VA-VQTAKTNLLDELPQSVLKWAPS----G----SSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HH-HHHHHHHHHHTTTHHHHHHSCT----T----SCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HH-HHHHHHhhcccccHHHHhhccc----c----ccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 11 1111111100 00111111100 0 112358899999999999999999999999987644
No 148
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=9.6e-39 Score=345.74 Aligned_cols=256 Identities=23% Similarity=0.351 Sum_probs=206.8
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|... ++..||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFV--EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGC--SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhcc--chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 4578999999999999999999876 477899999875422 2356789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGla 778 (973)
|||+++++|.+++.. ...+++.++..++.|++.||+||| +++|+||||||+||++ +.++.+||+|||++
T Consensus 85 ~e~~~~~~L~~~~~~-----~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~ 156 (277)
T 3f3z_A 85 MELCTGGELFERVVH-----KRVFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLA 156 (277)
T ss_dssp EECCCSCBHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EeccCCCcHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccc
Confidence 999999999998865 245899999999999999999999 8899999999999999 78899999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
....... ......||+.|+|||++.+ .++.++||||||+++|||++|+.||......+.. ..+...
T Consensus 157 ~~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~------~~~~~~----- 222 (277)
T 3f3z_A 157 ARFKPGK--MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVM------LKIREG----- 222 (277)
T ss_dssp EECCTTS--CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH------HHHHHC-----
T ss_pred eeccCcc--chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHH------HHHHhC-----
Confidence 8654432 2344579999999998765 4899999999999999999999999876533211 111110
Q ss_pred hhcCccccCCcc-cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 AAIDPALEVNEE-TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~~~~~~l~~~~~-~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... .......+.+++.+|++.||++||++.|+++ ++++++
T Consensus 223 -----~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~--h~~~~~ 267 (277)
T 3f3z_A 223 -----TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE--HEWFEK 267 (277)
T ss_dssp -----CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT--SHHHHH
T ss_pred -----CCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc--CHHHhc
Confidence 0000000 0011245789999999999999999999998 566553
No 149
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-39 Score=364.17 Aligned_cols=260 Identities=29% Similarity=0.452 Sum_probs=198.1
Q ss_pred CccccCcccccCccEEEEEEEC--CC--CEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe-CCeEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELE--DG--TKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE-GNERLL 700 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~--~g--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 700 (973)
.|...+.||+|+||.||+|++. ++ ..||||.++.. ......++|.+|+.++++++||||++++++|.. ++..++
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSC-SCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCC-CCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 4667789999999999999764 22 36899988653 344566789999999999999999999999765 457799
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+++|+|.+++.. ....+++.+++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++.
T Consensus 169 v~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~ 241 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRN----ETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARD 241 (373)
T ss_dssp EEECCTTCBHHHHHHC----TTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred EEECCCCCCHHHHHhh----cccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccc
Confidence 9999999999999964 2245789999999999999999999 78999999999999999999999999999985
Q ss_pred CCCCCcc---eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 781 APDGEKS---VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 781 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
....... ......+|+.|+|||++.+..++.++|||||||++|||++ |.+||......+... .+....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~------~~~~~~-- 313 (373)
T 3c1x_A 242 MYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV------YLLQGR-- 313 (373)
T ss_dssp ----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH------HHHTTC--
T ss_pred ccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH------HHHcCC--
Confidence 5432211 1233467889999999999999999999999999999999 677887654332111 011100
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
....+ ......+.+++.+||+.||++||++.|+++.|+.+...+.
T Consensus 314 --~~~~p--------~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 314 --RLLQP--------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp --CCCCC--------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred --CCCCC--------CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 00011 1122457899999999999999999999999999988654
No 150
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.6e-38 Score=346.49 Aligned_cols=253 Identities=26% Similarity=0.399 Sum_probs=203.1
Q ss_pred CccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe----CCeEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE----GNERLL 700 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~l 700 (973)
.|...+.||+|+||.||+|... ++..||+|++..........+.+.+|+.++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 4677788999999999999774 57899999998765566777889999999999999999999999875 345799
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEEC-CCCCEEEeeccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLD-DDYRAKVSDFGL 777 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~-~~~~~kl~DfGl 777 (973)
||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+ |+||||||+||+++ .++.+||+|||+
T Consensus 107 v~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRF-----KVMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEecCCCCHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 99999999999999652 45899999999999999999999 667 99999999999998 789999999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
+....... .....||+.|+|||++. +.++.++|||||||++|||++|+.||........ .......
T Consensus 179 ~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~-----~~~~~~~----- 244 (290)
T 1t4h_A 179 ATLKRASF---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-----IYRRVTS----- 244 (290)
T ss_dssp GGGCCTTS---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-----HHHHHTT-----
T ss_pred cccccccc---cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH-----HHHHHhc-----
Confidence 97554332 23457999999999876 5699999999999999999999999976543221 1111111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+. .........+.+++.+|++.||.+||++.||++ +++++
T Consensus 245 --~~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~--h~~f~ 287 (290)
T 1t4h_A 245 --GVKPA----SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN--HAFFQ 287 (290)
T ss_dssp --TCCCG----GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGC
T ss_pred --cCCcc----ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh--Ccccc
Confidence 01110 001111235789999999999999999999997 44443
No 151
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2e-39 Score=375.59 Aligned_cols=255 Identities=25% Similarity=0.327 Sum_probs=198.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|+..+.||+|+||.||+|+.. +|+.||||+++... ........+.+|+++++.++||||+++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 468999999999999999999864 68999999987531 1233456788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcc-CCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLAR-QTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~-~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
|||+++|+|.+++.. ...+++..+..++.||++||+||| + ++|+||||||+|||++.++.+||+|||+++.
T Consensus 227 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~ 298 (446)
T 4ejn_A 227 MEYANGGELFFHLSR-----ERVFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKE 298 (446)
T ss_dssp ECCCSSCBHHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred EeeCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCcee
Confidence 999999999999865 246899999999999999999999 5 7999999999999999999999999999985
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..+...
T Consensus 299 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~------~~i~~~------- 364 (446)
T 4ejn_A 299 GIKDG-ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF------ELILME------- 364 (446)
T ss_dssp TCC------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH------HHHHHC-------
T ss_pred ccCCC-cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHH------HHHHhC-------
Confidence 43322 2344578999999999999999999999999999999999999999876543211 111111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHHHHHHhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVNVLSPLVE 908 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~~L~~~~~ 908 (973)
...... .....+.+++.+||+.||.+|| ++.|+++ +++++
T Consensus 365 ---~~~~p~---~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~--hp~f~ 409 (446)
T 4ejn_A 365 ---EIRFPR---TLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ--HRFFA 409 (446)
T ss_dssp ---CCCCCT---TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT--SGGGT
T ss_pred ---CCCCCc---cCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh--Ccccc
Confidence 111000 1123477999999999999999 9999987 55544
No 152
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=3.7e-39 Score=362.56 Aligned_cols=276 Identities=22% Similarity=0.351 Sum_probs=197.5
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC------C
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG------N 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 696 (973)
.++|...+.||+|+||.||+|.. .+|+.||||++..........+.+.+|++++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 37899999999999999999976 4689999999976655666778899999999999999999999998754 5
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..++||||+ +++|.+++.. ..+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG 177 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC------QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFG 177 (367)
T ss_dssp CCEEEEECC-CEECC-----------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC--
T ss_pred eEEEEeccc-CCCHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecc
Confidence 679999999 7899988854 46899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch-
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK- 854 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~- 854 (973)
+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+....+.... .........
T Consensus 178 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~--i~~~~g~p~~ 251 (367)
T 2fst_X 178 LARHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKL--ILRLVGTPGA 251 (367)
T ss_dssp -----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH--HHHHHCSCCH
T ss_pred cccccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHH--HHHHhCCCCH
Confidence 99865432 344679999999999886 6789999999999999999999999987664332111 111000000
Q ss_pred --------hHHHhhcCccccCCcccH-----HHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCCC
Q 041143 855 --------EKFKAAIDPALEVNEETF-----ESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDES 917 (973)
Q Consensus 855 --------~~~~~~~~~~l~~~~~~~-----~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~ 917 (973)
......+........... .....+.+|+.+|++.||++|||+.|+++ +++++.+..+.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~--hp~~~~~~~~~~~~ 325 (367)
T 2fst_X 252 ELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA--HAYFAQYHDPDDEP 325 (367)
T ss_dssp HHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGTTTCCGGGCC
T ss_pred HHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc--ChhhhhccCCCCCC
Confidence 000111100000000011 11245789999999999999999999998 78887766554443
No 153
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=385.97 Aligned_cols=253 Identities=26% Similarity=0.379 Sum_probs=201.6
Q ss_pred cccccCccEEEEEEEC---CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEecCCC
Q 041143 632 ELGRGGFGTVYKGELE---DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPHG 708 (973)
Q Consensus 632 ~lG~G~fg~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~~~~g 708 (973)
.||+|+||.||+|.+. ++..||||+++... .....++|.+|+++|++++|||||+++++|.. +..++||||+++|
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~-~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g 420 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT-EKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGG 420 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCC-SSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCC-ChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCC
Confidence 7999999999999764 46679999997652 33346789999999999999999999999976 5689999999999
Q ss_pred CHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCCcce
Q 041143 709 ALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEKSV 788 (973)
Q Consensus 709 ~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~~~ 788 (973)
+|.+++... ...+++.++..|+.||++||+||| +++|+||||||+|||++.++.+||+|||+++.........
T Consensus 421 ~L~~~l~~~----~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~ 493 (613)
T 2ozo_A 421 PLHKFLVGK----REEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYY 493 (613)
T ss_dssp BHHHHHTTC----TTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC------
T ss_pred cHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCcee
Confidence 999999642 356899999999999999999999 7899999999999999999999999999998654332221
Q ss_pred --ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccc
Q 041143 789 --VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPAL 865 (973)
Q Consensus 789 --~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 865 (973)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+.. . .+.. .. .+
T Consensus 494 ~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~---~---~i~~-------~~--~~ 558 (613)
T 2ozo_A 494 TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVM---A---FIEQ-------GK--RM 558 (613)
T ss_dssp --------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHH---H---HHHT-------TC--CC
T ss_pred eeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH---H---HHHc-------CC--CC
Confidence 122346789999999999999999999999999999998 99999876543321 1 1111 00 01
Q ss_pred cCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 866 EVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 866 ~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
. .+......+.+++.+||+.||++||++.+|++.|+.+.....
T Consensus 559 ~---~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~ 601 (613)
T 2ozo_A 559 E---CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLA 601 (613)
T ss_dssp C---CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHS
T ss_pred C---CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhc
Confidence 1 011123457899999999999999999999999999877654
No 154
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.1e-38 Score=356.74 Aligned_cols=275 Identities=23% Similarity=0.375 Sum_probs=214.4
Q ss_pred HHHHHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHh--cCCCceeeeeeEEEe
Q 041143 617 VQVLRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSK--VRHRHLVSLLGYSIE 694 (973)
Q Consensus 617 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~ 694 (973)
....+...++|...+.||+|+||.||+|+.. |+.||||++... ..+.+.+|++++.. ++||||+++++++..
T Consensus 34 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~ 107 (342)
T 1b6c_B 34 LLVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNK 107 (342)
T ss_dssp HHHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG-----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEEC
T ss_pred eeecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch-----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecc
Confidence 3344567789999999999999999999885 899999998542 23567889999987 789999999999988
Q ss_pred CC----eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc-----cCCeeeccCCCCcEEEC
Q 041143 695 GN----ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA-----RQTFIHRDLKSSNILLD 765 (973)
Q Consensus 695 ~~----~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~-----~~~ivH~Dikp~Nill~ 765 (973)
.. ..++||||+++|+|.+++.. ..+++.+++.++.|++.||+|||... +++|+||||||+||+++
T Consensus 108 ~~~~~~~~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~ 181 (342)
T 1b6c_B 108 DNGTWTQLWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK 181 (342)
T ss_dssp CCSSCCCEEEEECCCTTCBHHHHHHH------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEEC
T ss_pred cCCccceeEEEEeecCCCcHHHHHhc------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEEC
Confidence 76 78999999999999999965 35899999999999999999999321 56899999999999999
Q ss_pred CCCCEEEeeccccccCCCCCcc---eecccccccCcccccccccC------cCCCchhHHhHHHHHHHHHhC--------
Q 041143 766 DDYRAKVSDFGLVKLAPDGEKS---VVTRLAGTFGYLAPEYAVMG------KITTKADVFSYGVVLMELLTG-------- 828 (973)
Q Consensus 766 ~~~~~kl~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg-------- 828 (973)
.++.+||+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 182 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~ 261 (342)
T 1b6c_B 182 KNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHE 261 (342)
T ss_dssp TTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCC
T ss_pred CCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccc
Confidence 9999999999999855443322 22445799999999998765 344689999999999999999
Q ss_pred --CCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHh
Q 041143 829 --LAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPL 906 (973)
Q Consensus 829 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~ 906 (973)
+.||......+. ....+..... .....+.+.......+....+.+++.+|++.||++||++.||++.|+.+
T Consensus 262 ~~~~p~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i 334 (342)
T 1b6c_B 262 DYQLPYYDLVPSDP-SVEEMRKVVC------EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334 (342)
T ss_dssp CCCCTTTTTSCSSC-CHHHHHHHHT------TSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred ccccCccccCcCcc-cHHHHHHHHH------HHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence 778865432211 1111111111 1112222221112335667789999999999999999999999999999
Q ss_pred hhhc
Q 041143 907 VEKW 910 (973)
Q Consensus 907 ~~~~ 910 (973)
.++.
T Consensus 335 ~~~~ 338 (342)
T 1b6c_B 335 SQQE 338 (342)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8753
No 155
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.8e-39 Score=352.27 Aligned_cols=251 Identities=24% Similarity=0.411 Sum_probs=201.6
Q ss_pred hcCccccCcccccCccEEEEEEECC-C-------CEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELED-G-------TKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG 695 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~-g-------~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 695 (973)
.++|...+.||+|+||.||+|+... + ..||+|++... .....+.+.+|++++++++||||+++++++.++
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 84 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA--HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG--GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc--cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC
Confidence 3678899999999999999997653 3 47999998654 344557899999999999999999999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC------
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR------ 769 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~------ 769 (973)
+..++||||+++|+|.+++... ...+++..+..++.||+.||+||| +++|+||||||+||+++.++.
T Consensus 85 ~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~ 157 (289)
T 4fvq_A 85 DENILVQEFVKFGSLDTYLKKN----KNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNP 157 (289)
T ss_dssp TCCEEEEECCTTCBHHHHHHHT----GGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBC
T ss_pred CCCEEEEECCCCCCHHHHHHhC----CCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCccccccc
Confidence 9999999999999999999762 234899999999999999999999 889999999999999998887
Q ss_pred --EEEeeccccccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCC-CCCCCChhhHHHHHH
Q 041143 770 --AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLA-ALDEERPEESRYLAE 845 (973)
Q Consensus 770 --~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~-p~~~~~~~~~~~~~~ 845 (973)
+||+|||+++.... .....||+.|+|||++.+ ..++.++|||||||++|||++|.. |+..........
T Consensus 158 ~~~kl~Dfg~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~--- 229 (289)
T 4fvq_A 158 PFIKLSDPGISITVLP-----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQ--- 229 (289)
T ss_dssp CEEEECCCCSCTTTSC-----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH---
T ss_pred ceeeeccCcccccccC-----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHH---
Confidence 99999999875432 123468999999999987 778999999999999999999654 444433221110
Q ss_pred HHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 846 WFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..... ..+.+.. ...+.+++.+|++.||++||++.|+++.|+++..
T Consensus 230 ----~~~~~----~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 230 ----FYEDR----HQLPAPK---------AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp ----HHHTT----CCCCCCS---------SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred ----Hhhcc----CCCCCCC---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 00000 0011111 1236799999999999999999999999988865
No 156
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2e-38 Score=352.68 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=208.5
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|+..+.||+|+||.||+|+.. +|+.||||++..........+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 368999999999999999999876 4899999999776556666778899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++++|..++.. ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 104 e~~~~~~l~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 175 (331)
T 4aaa_A 104 EFVDHTILDDLELF-----PNGLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLA 175 (331)
T ss_dssp ECCSEEHHHHHHHS-----TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred ecCCcchHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence 99999999887643 245899999999999999999999 7899999999999999999999999999998554
Q ss_pred CCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh----------
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK---------- 851 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~---------- 851 (973)
... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+... .......
T Consensus 176 ~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 252 (331)
T 4aaa_A 176 APG-EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLY--HIMMCLGNLIPRHQELF 252 (331)
T ss_dssp ---------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH--HHHHHHCSCCHHHHHHH
T ss_pred CCc-cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHH--HHHHHhCCCChhhhhHh
Confidence 322 223445799999999998875 78999999999999999999999998766433211 1111000
Q ss_pred hchhHHHhhcCccccCCcc----cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 852 SSKEKFKAAIDPALEVNEE----TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 852 ~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...........+.+..... .......+.+++.+|++.||++||++.|+++ +++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~--hp~f~ 311 (331)
T 4aaa_A 253 NKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH--HDFFQ 311 (331)
T ss_dssp HHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG--SHHHH
T ss_pred hhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc--Cchhc
Confidence 0000111111111110000 0112356889999999999999999999998 66655
No 157
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=3.9e-38 Score=364.86 Aligned_cols=267 Identities=20% Similarity=0.279 Sum_probs=211.1
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCC-CceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRH-RHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|+. .+++.||||++...... +++.+|+++++.++| ++|..+..++.+.+..++|
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lv 81 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLV 81 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEE
Confidence 46899999999999999999986 56899999988654322 347889999999976 5666777777788899999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGla 778 (973)
|||+ +++|.+++... ...+++.+++.|+.||+.||+||| +++||||||||+|||+ +.++.+||+|||++
T Consensus 82 me~~-g~sL~~ll~~~----~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla 153 (483)
T 3sv0_A 82 MDLL-GPSLEDLFNFC----SRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLA 153 (483)
T ss_dssp EECC-CCBHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTC
T ss_pred EECC-CCCHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcc
Confidence 9999 99999999642 246899999999999999999999 7899999999999999 68899999999999
Q ss_pred ccCCCCCcc------eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh
Q 041143 779 KLAPDGEKS------VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS 852 (973)
Q Consensus 779 ~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 852 (973)
+........ ......||+.|+|||++.+..++.++|||||||++|||++|+.||..............+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~- 232 (483)
T 3sv0_A 154 KKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKK- 232 (483)
T ss_dssp EECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHH-
T ss_pred eeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhcc-
Confidence 865443221 1235689999999999999999999999999999999999999998765433322222211111
Q ss_pred chhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCC
Q 041143 853 SKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPI 913 (973)
Q Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~ 913 (973)
....+..... .....+.+++..|++.||++||++.+|++.|+.+.+.....
T Consensus 233 ----~~~~~~~l~~------~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~ 283 (483)
T 3sv0_A 233 ----VATSIEALCR------GYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQ 283 (483)
T ss_dssp ----HHSCHHHHHT------TSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred ----ccccHHHHhc------CCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCC
Confidence 1100000000 11245789999999999999999999999999998765433
No 158
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.3e-38 Score=352.40 Aligned_cols=258 Identities=25% Similarity=0.373 Sum_probs=208.7
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
..++|...+.||+|+||.||+|+.. +|+.||||+++...... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 89 (321)
T 2a2a_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD 89 (321)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence 3467999999999999999999875 68999999997543221 135678999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC----CEEEe
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY----RAKVS 773 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~----~~kl~ 773 (973)
.++||||+++|+|.+++.. ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 90 ~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~ 161 (321)
T 2a2a_A 90 VVLILELVSGGELFDFLAQ-----KESLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLI 161 (321)
T ss_dssp EEEEECCCCSCBHHHHHHT-----CSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEc
Confidence 9999999999999999964 246899999999999999999999 78999999999999999887 79999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+...
T Consensus 162 Dfg~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~i~~~ 233 (321)
T 2a2a_A 162 DFGLAHEIEDGV--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET------LANITSV 233 (321)
T ss_dssp CCTTCEECCTTC--CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHH------HHHHHTT
T ss_pred cCccceecCccc--cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHhc
Confidence 999998665432 23445799999999999999999999999999999999999999987653221 1111110
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
... .++... ......+.+++.+|++.||++||++.|+++ ++++
T Consensus 234 ~~~----~~~~~~-----~~~~~~~~~li~~~l~~dp~~Rps~~e~l~--hp~~ 276 (321)
T 2a2a_A 234 SYD----FDEEFF-----SHTSELAKDFIRKLLVKETRKRLTIQEALR--HPWI 276 (321)
T ss_dssp CCC----CCHHHH-----TTCCHHHHHHHHTTSCSSTTTSCCHHHHHH--STTT
T ss_pred ccc----cChhhh-----cccCHHHHHHHHHHcCCChhhCcCHHHHhc--Cccc
Confidence 000 000000 011234779999999999999999999998 4444
No 159
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.1e-38 Score=354.27 Aligned_cols=263 Identities=31% Similarity=0.480 Sum_probs=207.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCE--EEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTK--IAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~--vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 700 (973)
++|...+.||+|+||.||+|+.. +|.. +|||+++.. ......+.+.+|+++++++ +||||+++++++.+.+..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEY-ASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC-------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccc-cchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 67889999999999999999765 4554 499998753 2334456789999999999 89999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhh-----------ccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC
Q 041143 701 VYEYMPHGALSRHLFRWEK-----------LQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR 769 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~-----------~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~ 769 (973)
||||+++|+|.+++..... .....+++.+++.++.||+.||+||| +++|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCe
Confidence 9999999999999976331 12346899999999999999999999 889999999999999999999
Q ss_pred EEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHH
Q 041143 770 AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 770 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 848 (973)
+||+|||+++..... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||......+. ..
T Consensus 181 ~kL~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~------~~ 252 (327)
T 1fvr_A 181 AKIADFGLSRGQEVY--VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------YE 252 (327)
T ss_dssp EEECCTTCEESSCEE--CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH------HH
T ss_pred EEEcccCcCcccccc--ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHH------HH
Confidence 999999999743221 11233457889999999998899999999999999999998 9999987653221 11
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
.+ ......... ......+.+++.+|++.||++||++.|+++.|+.+.++..
T Consensus 253 ~~-------~~~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 253 KL-------PQGYRLEKP-----LNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp HG-------GGTCCCCCC-----TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred Hh-------hcCCCCCCC-----CCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence 11 111111111 1122457899999999999999999999999999987543
No 160
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=353.62 Aligned_cols=274 Identities=22% Similarity=0.286 Sum_probs=201.6
Q ss_pred HHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCC---ChHHHHHHHHHHHHHHhc---CCCceeeeeeEEEe
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVT---TTKALDEFQSEIAVLSKV---RHRHLVSLLGYSIE 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~---~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~ 694 (973)
...++|+..+.||+|+||.||+|+. .+|+.||||+++.... .......+.+|+++++++ +||||+++++++..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 3467999999999999999999986 4689999999864321 111123566777777766 49999999999987
Q ss_pred CC-----eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC
Q 041143 695 GN-----ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR 769 (973)
Q Consensus 695 ~~-----~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~ 769 (973)
.. ..++||||+. |+|.+++... ....+++.++..++.||+.||+||| +++|+||||||+||+++.++.
T Consensus 86 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~ 158 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVD-QDLRTYLDKA---PPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGT 158 (308)
T ss_dssp CCSSSEEEEEEEEECCC-CBHHHHHHTC---CTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSC
T ss_pred cCCCCceeEEEEehhhh-cCHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCC
Confidence 65 4789999996 6999999652 2244899999999999999999999 789999999999999999999
Q ss_pred EEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 770 AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 770 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+.. ......
T Consensus 159 ~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~i~~~ 234 (308)
T 3g33_A 159 VKLADFGLARIYSYQM--ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQL--GKIFDL 234 (308)
T ss_dssp EEECSCSCTTTSTTCC--CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHH--HHHHHH
T ss_pred EEEeeCccccccCCCc--ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHH
Confidence 9999999998654322 234568999999999999999999999999999999999999999876543321 111111
Q ss_pred Hhhc-hhHHHh-------hcCccccCC--cccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 850 IKSS-KEKFKA-------AIDPALEVN--EETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 850 ~~~~-~~~~~~-------~~~~~l~~~--~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.... ...... .+.+..... ....+....+.+++.+|++.||++|||+.|+++ +++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--h~~~~ 301 (308)
T 3g33_A 235 IGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ--HSYLH 301 (308)
T ss_dssp HCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT--STTC-
T ss_pred hCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc--Ccccc
Confidence 1000 000000 000000000 000012245789999999999999999999998 55554
No 161
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=2.2e-38 Score=356.55 Aligned_cols=263 Identities=27% Similarity=0.382 Sum_probs=210.2
Q ss_pred HHHHHHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCC------hHHHHHHHHHHHHHHhc-CCCceeee
Q 041143 617 VQVLRKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTT------TKALDEFQSEIAVLSKV-RHRHLVSL 688 (973)
Q Consensus 617 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~------~~~~~~~~~E~~~l~~l-~h~niv~l 688 (973)
........++|...+.||+|+||.||+|++. +|+.||||+++..... ....+.+.+|+.+++++ +||||+++
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 165 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 3445566788999999999999999999885 6999999998754321 12245688999999999 79999999
Q ss_pred eeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC
Q 041143 689 LGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY 768 (973)
Q Consensus 689 ~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~ 768 (973)
++++...+..++||||+++|+|.+++.. ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++
T Consensus 166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~ 237 (365)
T 2y7j_A 166 IDSYESSSFMFLVFDLMRKGELFDYLTE-----KVALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNM 237 (365)
T ss_dssp EEEEEBSSEEEEEECCCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTC
T ss_pred EEEEeeCCEEEEEEEeCCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCC
Confidence 9999999999999999999999999965 246899999999999999999999 78999999999999999999
Q ss_pred CEEEeeccccccCCCCCcceecccccccCccccccccc------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHH
Q 041143 769 RAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVM------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRY 842 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 842 (973)
.+||+|||++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........
T Consensus 238 ~ikl~DfG~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~- 314 (365)
T 2y7j_A 238 QIRLSDFGFSCHLEPGE--KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILML- 314 (365)
T ss_dssp CEEECCCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHH-
T ss_pred CEEEEecCcccccCCCc--ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHH-
Confidence 99999999998655432 2345689999999998863 35889999999999999999999999765432211
Q ss_pred HHHHHHHHhhchhHHHhhcCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 843 LAEWFWRIKSSKEKFKAAIDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
..+... ........ ......+.+++.+|++.||++||++.|+++ ++++
T Consensus 315 -----~~i~~~----------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~--hp~f 363 (365)
T 2y7j_A 315 -----RMIMEG----------QYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ--HPFF 363 (365)
T ss_dssp -----HHHHHT----------CCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH--SGGG
T ss_pred -----HHHHhC----------CCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc--Cccc
Confidence 111110 00000000 011234789999999999999999999998 4443
No 162
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6.8e-39 Score=356.76 Aligned_cols=261 Identities=24% Similarity=0.379 Sum_probs=206.8
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 700 (973)
..++|...+.||+|+||.||+|..+ +|+.||||+++.... .+.+|++++.++ +||||+++++++.+++..++
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l 93 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR------DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC------CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC------ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence 4578999999999999999999875 588999999976532 245688888888 79999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC----CCEEEeecc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD----YRAKVSDFG 776 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~----~~~kl~DfG 776 (973)
||||+++|+|.+++.. ...+++.++..++.||+.||+||| +++|+||||||+|||+.++ +.+||+|||
T Consensus 94 v~E~~~gg~L~~~i~~-----~~~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg 165 (342)
T 2qr7_A 94 VTELMKGGELLDKILR-----QKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFG 165 (342)
T ss_dssp EECCCCSCBHHHHHHT-----CTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCT
T ss_pred EEeCCCCCcHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECC
Confidence 9999999999999865 246899999999999999999999 7899999999999998543 359999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
+++....... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||..........+ +..+....
T Consensus 166 ~a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~---~~~i~~~~-- 239 (342)
T 2qr7_A 166 FAKQLRAENG-LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEI---LARIGSGK-- 239 (342)
T ss_dssp TCEECBCTTC-CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHH---HHHHHHCC--
T ss_pred CcccCcCCCC-ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHH---HHHHccCC--
Confidence 9986544322 23456899999999999888899999999999999999999999986432222111 11111111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
++ +. ..........+.+++.+|++.||++||++.|+++ ++++..|..
T Consensus 240 ----~~--~~-~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~--hp~~~~~~~ 286 (342)
T 2qr7_A 240 ----FS--LS-GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR--HPWIVHWDQ 286 (342)
T ss_dssp ----CC--CC-STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT--SHHHHTGGG
T ss_pred ----cc--cC-ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc--CCeecCccc
Confidence 00 00 0000112245779999999999999999999998 788876654
No 163
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=5.3e-39 Score=348.19 Aligned_cols=257 Identities=23% Similarity=0.373 Sum_probs=206.9
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe--CCeEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE--GNERLL 700 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 700 (973)
.++|+..+.||+|+||.||+|... +|+.||+|++..........+.+.+|++++++++||||+++++++.+ ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 368899999999999999999875 68999999998765566677889999999999999999999998864 567899
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC-----eeeccCCCCcEEECCCCCEEEeec
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT-----FIHRDLKSSNILLDDDYRAKVSDF 775 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~-----ivH~Dikp~Nill~~~~~~kl~Df 775 (973)
||||+++|+|.+++..... ....+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+||
T Consensus 85 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTK-ERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEECCTTEEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEeCCCCCCHHHHHHhhcc-cCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 9999999999999976433 2356899999999999999999999 555 999999999999999999999999
Q ss_pred cccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 776 GLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 776 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
|+++....... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||......+. .. .+.
T Consensus 161 g~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---~~---~i~---- 229 (279)
T 2w5a_A 161 GLARILNHDTS-FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL---AG---KIR---- 229 (279)
T ss_dssp CHHHHC---CH-HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH---HH---HHH----
T ss_pred chheeeccccc-cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHH---HH---HHh----
Confidence 99986544321 22345789999999999988999999999999999999999999987653221 11 111
Q ss_pred HHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHH
Q 041143 856 KFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVL 903 (973)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L 903 (973)
....+.+. ......+.+++.+|++.||++||++.||++.+
T Consensus 230 ---~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 230 ---EGKFRRIP-----YRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp ---HTCCCCCC-----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred ---hcccccCC-----cccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 11111111 11224578999999999999999999999833
No 164
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.3e-38 Score=352.53 Aligned_cols=256 Identities=24% Similarity=0.395 Sum_probs=210.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|... +++.||+|++.... ......+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 367889999999999999999876 47899999986542 3445667899999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++++|.+++.. ...+++.++..++.||++||+||| +++|+||||||+||+++.++.+||+|||+++..
T Consensus 120 ~e~~~~~~L~~~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 191 (335)
T 2owb_A 120 LELCRRRSLLELHKR-----RKALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 191 (335)
T ss_dssp ECCCTTCBHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCCHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceec
Confidence 999999999998865 246899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+....
T Consensus 192 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~~~~~~------- 257 (335)
T 2owb_A 192 EYDGE-RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET------YLRIKKNE------- 257 (335)
T ss_dssp CSTTC-CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH------HHHHHHTC-------
T ss_pred ccCcc-cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH------HHHHhcCC-------
Confidence 43222 23446799999999999999999999999999999999999999987653221 11111100
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+. . .....+.+++.+|++.||++||++.|+++ +.++..
T Consensus 258 -~~~~--~---~~~~~~~~li~~~l~~dp~~Rps~~ell~--~~~~~~ 297 (335)
T 2owb_A 258 -YSIP--K---HINPVAASLIQKMLQTDPTARPTINELLN--DEFFTS 297 (335)
T ss_dssp -CCCC--T---TSCHHHHHHHHHHTCSSGGGSCCGGGGGG--SHHHHT
T ss_pred -CCCC--c---cCCHHHHHHHHHHccCChhHCcCHHHHhc--CccccC
Confidence 0111 0 11234778999999999999999999998 566554
No 165
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=8.4e-39 Score=350.17 Aligned_cols=261 Identities=28% Similarity=0.422 Sum_probs=205.3
Q ss_pred cCccccCcccccCccEEEEEEECC----CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe-CCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELED----GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE-GNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~ 699 (973)
.+|...+.||+|+||.||+|.+.+ +..||||.+... ......+.+.+|++++++++||||+++++++.. ++..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRI-TDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccC-CCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 467888999999999999998643 235899988753 355566789999999999999999999999754 55779
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++.. ....+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~v~e~~~~~~L~~~l~~----~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~ 176 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRN----ETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLAR 176 (298)
T ss_dssp EEEECCTTCBHHHHHHC----TTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGC
T ss_pred EEEeCCCCCCHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccc
Confidence 99999999999999964 2256799999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCc---ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 780 LAPDGEK---SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 780 ~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
....... .......||+.|+|||.+.+..++.++||||||+++|||++ |.+||......+... ....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~------~~~~--- 247 (298)
T 3f66_A 177 DMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV------YLLQ--- 247 (298)
T ss_dssp CCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH------HHHT---
T ss_pred cccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH------HHhc---
Confidence 6543321 12234567889999999999999999999999999999999 566665544322110 0110
Q ss_pred HHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 856 KFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
....... . .....+.+++.+|++.||++||++.|+++.|+++...+.
T Consensus 248 ----~~~~~~~-~----~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~ 294 (298)
T 3f66_A 248 ----GRRLLQP-E----YCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 294 (298)
T ss_dssp ----TCCCCCC-T----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred ----CCCCCCC-c----cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 0000000 1 112357899999999999999999999999999987543
No 166
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.7e-38 Score=350.86 Aligned_cols=272 Identities=21% Similarity=0.306 Sum_probs=199.1
Q ss_pred cCcccc-CcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEE
Q 041143 625 QNFAQE-NELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 625 ~~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 701 (973)
+.|.+. +.||+|+||.||+|... +++.||||++.... ....+.+.+|++++.++ +||||+++++++.+.+..++|
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv 89 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQP--GHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLV 89 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS--SCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCc--chhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEE
Confidence 567774 78999999999999864 68999999997642 23346789999999985 799999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC---EEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR---AKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~---~kl~DfGla 778 (973)
|||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+||+++.++. +||+|||++
T Consensus 90 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~ 161 (316)
T 2ac3_A 90 FEKMRGGSILSHIHKR-----RHFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLG 161 (316)
T ss_dssp EECCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCC
T ss_pred EEcCCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCc
Confidence 9999999999999752 46899999999999999999999 789999999999999998776 999999998
Q ss_pred ccCCCCCc------ceecccccccCccccccccc-----CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 779 KLAPDGEK------SVVTRLAGTFGYLAPEYAVM-----GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 779 ~~~~~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
+....... .......||+.|+|||++.. ..++.++|||||||++|||++|+.||......+........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~ 241 (316)
T 2ac3_A 162 SGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEA 241 (316)
T ss_dssp C-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----C
T ss_pred cccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccccccc
Confidence 75432211 11233569999999999875 56899999999999999999999999865432100000000
Q ss_pred HHHhhchhHHHhhcCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 848 WRIKSSKEKFKAAIDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.... .......+........... ......+.+++.+|++.||++||++.|+++ +++++.
T Consensus 242 ~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~--hp~~~~ 301 (316)
T 2ac3_A 242 CPAC-QNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ--HPWVQG 301 (316)
T ss_dssp CHHH-HHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH--STTCC-
T ss_pred chhH-HHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc--ChhhcC
Confidence 0000 0000011111111111000 011245789999999999999999999998 555553
No 167
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3.1e-39 Score=377.83 Aligned_cols=260 Identities=28% Similarity=0.413 Sum_probs=208.2
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|+.. +|+.||||++..... .......+.+|++++++++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999875 689999999864311 112245688999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ....+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++..
T Consensus 263 mEy~~gg~L~~~l~~~---~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~ 336 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHM---GQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHV 336 (576)
T ss_dssp ECCCCSCBHHHHHHSS---SSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEcCCCCcHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceec
Confidence 9999999999998652 2245899999999999999999999 789999999999999999999999999999876
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.......... .....+.. .
T Consensus 337 ~~~~--~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~--~i~~~i~~--------~ 404 (576)
T 2acx_A 337 PEGQ--TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE--EVERLVKE--------V 404 (576)
T ss_dssp CTTC--CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHH--HHHHHHHH--------C
T ss_pred ccCc--cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHH--HHHHHhhc--------c
Confidence 5433 2344689999999999999999999999999999999999999998654321110 11111111 0
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~~L~~~~~ 908 (973)
...+. ......+.+++.+|++.||.+|| ++.||++ +++++
T Consensus 405 ~~~~p-----~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~--HpfF~ 449 (576)
T 2acx_A 405 PEEYS-----ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE--HPLFK 449 (576)
T ss_dssp CCCCC-----TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT--SGGGT
T ss_pred cccCC-----ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh--Chhhc
Confidence 11111 11123577999999999999999 7788887 55544
No 168
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.5e-40 Score=364.96 Aligned_cols=267 Identities=23% Similarity=0.375 Sum_probs=191.7
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHh--cCCCceeeeeeEEEeCC----e
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSK--VRHRHLVSLLGYSIEGN----E 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~ 697 (973)
.++|...+.||+|+||.||+|+.. |+.||||++... ....+.+|.+++.. ++||||+++++++.... .
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR-----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T-----THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc-----chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccce
Confidence 368999999999999999999876 889999998643 23467788888887 78999999999998876 7
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc-----cCCeeeccCCCCcEEECCCCCEEE
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA-----RQTFIHRDLKSSNILLDDDYRAKV 772 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~-----~~~ivH~Dikp~Nill~~~~~~kl 772 (973)
.++||||+++|+|.+++.. ..+++..++.++.|++.||+|||... +++|+||||||+|||++.++.+||
T Consensus 76 ~~lv~e~~~~g~L~~~l~~------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl 149 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNR------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCI 149 (303)
T ss_dssp EEEEEECCTTCCHHHHHHH------CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-B
T ss_pred eEEEEeccCCCCHHHHHhc------cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEE
Confidence 8999999999999999965 35788899999999999999999322 679999999999999999999999
Q ss_pred eeccccccCCCCCcc---eecccccccCcccccccccC------cCCCchhHHhHHHHHHHHHhC----------CCCCC
Q 041143 773 SDFGLVKLAPDGEKS---VVTRLAGTFGYLAPEYAVMG------KITTKADVFSYGVVLMELLTG----------LAALD 833 (973)
Q Consensus 773 ~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvvl~elltg----------~~p~~ 833 (973)
+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++| +.||.
T Consensus 150 ~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~ 229 (303)
T 3gxj_A 150 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 229 (303)
T ss_dssp CCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTT
T ss_pred eecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeecccc
Confidence 999999754433222 12334799999999998766 455689999999999999999 66665
Q ss_pred CCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 834 EERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...+..... ..... ........+.+.......+....+.+++.+|++.||++|||+.||++.|+.+.++
T Consensus 230 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 230 DLVPSDPSV-EEMRK------VVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp TTCC-CCCC-C-CHH------HHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred ccCCCCccH-HHHHH------HHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 432211000 00000 0001112222221112235667799999999999999999999999999988664
No 169
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=8e-39 Score=355.22 Aligned_cols=264 Identities=26% Similarity=0.393 Sum_probs=207.5
Q ss_pred hcCccccCcccccCccEEEEEEE------CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL------EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
.++|...+.||+|+||.||+|++ .+++.||||++... .......++.+|+.++++++||||+++++++...+.
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEV-CSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSS-CCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccc-cchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 46889999999999999999974 35778999999643 345566789999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhc--cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEE
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKL--QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKV 772 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~--~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl 772 (973)
.++||||+++|+|.+++...... ....+++.+++.++.||+.||+||| +.+|+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEE
Confidence 99999999999999999764321 1245899999999999999999999 789999999999999984 456999
Q ss_pred eeccccccCCCCC-cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHH
Q 041143 773 SDFGLVKLAPDGE-KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 773 ~DfGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
+|||+++...... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||......+. .. .+
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~---~~ 258 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEV---LE---FV 258 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHH---HH---HH
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHH---HH---HH
Confidence 9999987432221 122234568999999999999999999999999999999998 9999986653221 11 11
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. ...+... ......+.+++.+|++.||.+||++.+|++.|+.+.+.
T Consensus 259 ~~-------~~~~~~~-----~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 259 TS-------GGRMDPP-----KNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp HT-------TCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hc-------CCCCCCC-----CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 11 0001111 11224578999999999999999999999999988664
No 170
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=357.29 Aligned_cols=250 Identities=26% Similarity=0.353 Sum_probs=205.6
Q ss_pred HHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCCh------HHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTT------KALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
...++|...+.||+|+||.||+|+. .+++.||||+++...... ...+.+.+|++++++++||||+++++++.+
T Consensus 21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~ 100 (335)
T 3dls_A 21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN 100 (335)
T ss_dssp HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence 3457899999999999999999986 468899999997653221 133467789999999999999999999999
Q ss_pred CCeEEEEEEecCCC-CHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEe
Q 041143 695 GNERLLVYEYMPHG-ALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVS 773 (973)
Q Consensus 695 ~~~~~lV~e~~~~g-~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~ 773 (973)
.+..++||||+.+| +|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+
T Consensus 101 ~~~~~lv~e~~~~g~~l~~~~~~-----~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~ 172 (335)
T 3dls_A 101 QGFFQLVMEKHGSGLDLFAFIDR-----HPRLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLI 172 (335)
T ss_dssp SSEEEEEEECCTTSCBHHHHHHT-----CCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEEC
T ss_pred CCEEEEEEEeCCCCccHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEe
Confidence 99999999999777 99998865 246899999999999999999999 7899999999999999999999999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS 852 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 852 (973)
|||+++....... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....
T Consensus 173 Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--------------- 235 (335)
T 3dls_A 173 DFGSAAYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--------------- 235 (335)
T ss_dssp CCTTCEECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG---------------
T ss_pred ecccceECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH---------------
Confidence 9999986654332 334679999999999988877 7899999999999999999999965221
Q ss_pred chhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 853 SKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.......+... ....+.+++.+|++.||++||++.|+++ ++++.
T Consensus 236 ---~~~~~~~~~~~-------~~~~l~~li~~~L~~dP~~Rps~~ell~--hp~~~ 279 (335)
T 3dls_A 236 ---TVEAAIHPPYL-------VSKELMSLVSGLLQPVPERRTTLEKLVT--DPWVT 279 (335)
T ss_dssp ---GTTTCCCCSSC-------CCHHHHHHHHHHTCSSGGGSCCHHHHHH--CTTTT
T ss_pred ---HHhhccCCCcc-------cCHHHHHHHHHHccCChhhCcCHHHHhc--Ccccc
Confidence 01111111111 1234789999999999999999999998 55554
No 171
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.6e-38 Score=346.11 Aligned_cols=250 Identities=22% Similarity=0.314 Sum_probs=203.5
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 699 (973)
...++|...+.||+|+||.||+|... +++.||||+++...........+.+|+..+.++ +||||+++++++.+.+..+
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~ 87 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHML 87 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEE
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEE
Confidence 34578999999999999999999876 789999999987655566677889999999999 8999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC------------
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD------------ 767 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~------------ 767 (973)
+||||+++|+|.+++...... ...+++.++..++.||+.||+||| +++|+||||||+||+++.+
T Consensus 88 lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~ 163 (289)
T 1x8b_A 88 IQNEYCNGGSLADAISENYRI-MSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDE 163 (289)
T ss_dssp EEEECCTTCBHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC--------------
T ss_pred EEEEecCCCcHHHHHHhhccc-ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCccccccccc
Confidence 999999999999999764332 256899999999999999999999 7899999999999999844
Q ss_pred -------CCEEEeeccccccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhh
Q 041143 768 -------YRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEE 839 (973)
Q Consensus 768 -------~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~ 839 (973)
..+||+|||.++...... ...||+.|+|||++.+. .++.++|||||||++|||++|++++......
T Consensus 164 ~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~- 237 (289)
T 1x8b_A 164 DDWASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQW- 237 (289)
T ss_dssp ------CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHH-
T ss_pred ccccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHH-
Confidence 479999999998665432 23599999999998765 5668999999999999999998876533210
Q ss_pred HHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 840 SRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
..+ .....+.+. . .....+.+++.+|++.||++||++.|+++
T Consensus 238 --------~~~-------~~~~~~~~~-~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 238 --------HEI-------RQGRLPRIP-Q----VLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp --------HHH-------HTTCCCCCS-S----CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --------HHH-------HcCCCCCCC-c----ccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 001 111111111 0 11245789999999999999999999997
No 172
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2.3e-38 Score=357.65 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=202.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC------
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN------ 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 696 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 368999999999999999999765 6889999999876556667788999999999999999999999998654
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..++||||++ |+|.+++. ..+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||
T Consensus 104 ~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg 172 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ-------MELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFG 172 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred ceEEEEEcCC-CCHHHHHh-------hccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEee
Confidence 7899999996 57877774 34889999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh-----
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK----- 851 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~----- 851 (973)
+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+... ..+....
T Consensus 173 ~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~--~i~~~~~~~~~~ 248 (371)
T 2xrw_A 173 LARTAGTS--FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWN--KVIEQLGTPCPE 248 (371)
T ss_dssp C------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHC-CCCCCHH
T ss_pred cccccccc--cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHHhCCCCHH
Confidence 99865432 12344679999999999999999999999999999999999999998765432111 0000000
Q ss_pred ---hchhHH---------------HhhcCccccC--CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 852 ---SSKEKF---------------KAAIDPALEV--NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 852 ---~~~~~~---------------~~~~~~~l~~--~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...... ...+...... ..........+.+++.+|++.||++|||++|+++ +++++.|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~--hp~~~~~~ 326 (371)
T 2xrw_A 249 FMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ--HPYINVWY 326 (371)
T ss_dssp HHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH--SHHHHTTC
T ss_pred HHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC--Ccchhhhc
Confidence 000000 0001000000 0011223456889999999999999999999999 78777654
No 173
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-38 Score=348.94 Aligned_cols=260 Identities=28% Similarity=0.412 Sum_probs=206.0
Q ss_pred CccccCcccccCccEEEEEEECC-C---CEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE-EE
Q 041143 626 NFAQENELGRGGFGTVYKGELED-G---TKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER-LL 700 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~-g---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~l 700 (973)
.|...+.||+|+||.||+|.+.+ + ..||+|++... ......+.+.+|++++++++||||+++++++.+.+.. ++
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRI-TEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTC-CSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeecccc-ccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 45566899999999999997532 2 37999998753 3455677899999999999999999999999876655 99
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+.+|+|.+++.. ....+++.++..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++.
T Consensus 101 v~e~~~~~~L~~~~~~----~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 173 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRS----PQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARD 173 (298)
T ss_dssp EECCCTTCBHHHHHHC----TTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCT
T ss_pred EEecccCCCHHHHHhc----cccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCccc
Confidence 9999999999999965 2356899999999999999999999 78999999999999999999999999999985
Q ss_pred CCCCC---cceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCC-CCCCChhhHHHHHHHHHHHhhchhH
Q 041143 781 APDGE---KSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAA-LDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 781 ~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p-~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
..... ........||+.|+|||.+.+..++.++|||||||++|||++|..| +......+. ...+ .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~---~~~~---~----- 242 (298)
T 3pls_A 174 ILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDL---THFL---A----- 242 (298)
T ss_dssp TTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGH---HHHH---H-----
T ss_pred ccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHH---HHHh---h-----
Confidence 54322 1122345688999999999999999999999999999999995555 444333221 1110 0
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
........ ......+.+++.+|++.||.+|||+.++++.|+++.+...
T Consensus 243 --~~~~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~ 290 (298)
T 3pls_A 243 --QGRRLPQP-----EYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL 290 (298)
T ss_dssp --TTCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred --cCCCCCCC-----ccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence 00011110 1112457899999999999999999999999999988754
No 174
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=364.88 Aligned_cols=275 Identities=22% Similarity=0.305 Sum_probs=212.7
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC--eEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN--ERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lV 701 (973)
++|...+.||+|+||.||+|++. +|+.||||+++... .....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNIS-FLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGG-GGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEecccc-ccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 57889999999999999999876 48999999987532 2233567889999999999999999999998765 67999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE----CCCCCEEEeeccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL----DDDYRAKVSDFGL 777 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill----~~~~~~kl~DfGl 777 (973)
|||+++|+|.+++..... ...+++..++.++.||+.||+||| +++|+||||||+|||+ +.++.+||+|||+
T Consensus 88 ~e~~~~g~L~~~l~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~ 162 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSN--AYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (396)
T ss_dssp ECCCTTEEHHHHTTSGGG--TTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred EecCCCCCHHHHHHhhhc--ccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence 999999999999975322 234899999999999999999999 7899999999999999 7788899999999
Q ss_pred cccCCCCCcceecccccccCccccccccc--------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVM--------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... .+.+..
T Consensus 163 a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~--~~~~~~ 238 (396)
T 4eut_A 163 ARELEDDE--QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRN--KEVMYK 238 (396)
T ss_dssp CEECCCGG--GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTC--HHHHHH
T ss_pred ceEccCCC--ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccch--HHHHHH
Confidence 98664432 2344679999999998865 56788999999999999999999999754322111 111111
Q ss_pred HhhchhH--H---HhhcC------cccc-CCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 850 IKSSKEK--F---KAAID------PALE-VNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 850 ~~~~~~~--~---~~~~~------~~l~-~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
+...... . ..... ..+. ...........+.+++.+|++.||++||++.|+++.++.+.++
T Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 239 IITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred HhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 1111100 0 00000 0011 0112345666788999999999999999999999999988764
No 175
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=8.9e-39 Score=346.41 Aligned_cols=255 Identities=26% Similarity=0.442 Sum_probs=205.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|... +++.||||++..... .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 478999999999999999999775 577999999864311 111245688999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 88 ~e~~~~~~l~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~ 159 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL-----SKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHA 159 (279)
T ss_dssp ECCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC
T ss_pred EecCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccC
Confidence 9999999999998652 45899999999999999999999 889999999999999999999999999998654
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.... .....||+.|+|||.+.+..++.++||||||+++|||++|+.||......+.. ..+.. .
T Consensus 160 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~--------~ 222 (279)
T 3fdn_A 160 PSSR---RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETY------KRISR--------V 222 (279)
T ss_dssp -----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH------HHHHH--------T
T ss_pred Cccc---ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHH------HHHHh--------C
Confidence 3322 23457999999999999999999999999999999999999999866533211 11111 0
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
...+. . .....+.+++.+|++.||++||++.||++ ++++...
T Consensus 223 ~~~~~--~---~~~~~~~~li~~~l~~~p~~Rps~~e~l~--h~~~~~~ 264 (279)
T 3fdn_A 223 EFTFP--D---FVTEGARDLISRLLKHNPSQRPMLREVLE--HPWITAN 264 (279)
T ss_dssp CCCCC--T---TSCHHHHHHHHHHCCSSGGGSCCHHHHHH--CHHHHHH
T ss_pred CCCCC--C---cCCHHHHHHHHHHhccChhhCCCHHHHhh--CccccCC
Confidence 11111 0 11234679999999999999999999999 6776643
No 176
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=5.5e-38 Score=353.78 Aligned_cols=278 Identities=22% Similarity=0.336 Sum_probs=211.2
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC-----Ce
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-----NE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 697 (973)
.++|...+.||+|+||.||+|... +++.||||++... ......+.+.+|++++++++||||+++++++... ..
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPF-EHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCT-TCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccc-cCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 358999999999999999999865 6889999999753 3455567899999999999999999999999765 36
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+. |+|.+++.. ..+++.++..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 105 ~~iv~e~~~-~~L~~~l~~------~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 174 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKT------QHLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGL 174 (364)
T ss_dssp EEEEEECCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEcccC-cCHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcc
Confidence 899999996 699998864 45899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcc--eecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc-
Q 041143 778 VKLAPDGEKS--VVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS- 853 (973)
Q Consensus 778 a~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~- 853 (973)
++........ ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+..... .......
T Consensus 175 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i--~~~~~~~~ 252 (364)
T 3qyz_A 175 ARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHI--LGILGSPS 252 (364)
T ss_dssp CEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHH--HHHHCSCC
T ss_pred eEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHH--HHHhCCCC
Confidence 9865432211 1244689999999998764 45899999999999999999999999876644322111 1000000
Q ss_pred hhHHHhhcC--------ccccCCccc-----HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCC
Q 041143 854 KEKFKAAID--------PALEVNEET-----FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDE 916 (973)
Q Consensus 854 ~~~~~~~~~--------~~l~~~~~~-----~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~ 916 (973)
.+......+ ......... ......+.+++.+|++.||++|||+.|+++ +++++++.....+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~~~~~~~~~~~ 326 (364)
T 3qyz_A 253 QEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA--HPYLEQYYDPSDE 326 (364)
T ss_dssp HHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SGGGTTTCCGGGS
T ss_pred HHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc--CcchhhccCcccc
Confidence 000000000 000000000 111245789999999999999999999999 8888776544433
No 177
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=2.7e-38 Score=343.36 Aligned_cols=258 Identities=23% Similarity=0.377 Sum_probs=205.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
.++|...+.||+|+||.||+|+.. +|+.||||+++...... ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 467899999999999999999876 68999999987542221 1356789999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC----CEEEee
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY----RAKVSD 774 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~----~~kl~D 774 (973)
++||||+++++|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|
T Consensus 84 ~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~d 155 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAE-----KESLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLID 155 (283)
T ss_dssp EEEEECCCSCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECC
T ss_pred EEEEeecCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEe
Confidence 999999999999999965 246899999999999999999999 78999999999999998877 899999
Q ss_pred ccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+.. ..+....
T Consensus 156 fg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------~~~~~~~ 227 (283)
T 3bhy_A 156 FGIAHKIEAGN--EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETL------TNISAVN 227 (283)
T ss_dssp CTTCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH------HHHHTTC
T ss_pred cccceeccCCC--cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHH------HHhHhcc
Confidence 99998654432 233457999999999999899999999999999999999999999876532211 1111100
Q ss_pred hHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 855 EKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 855 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.. .++.. .......+.+++.+|++.||++||++.|+++ +++++
T Consensus 228 ~~----~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--h~~~~ 270 (283)
T 3bhy_A 228 YD----FDEEY-----FSNTSELAKDFIRRLLVKDPKRRMTIAQSLE--HSWIK 270 (283)
T ss_dssp CC----CCHHH-----HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH--CHHHH
T ss_pred cC----Ccchh-----cccCCHHHHHHHHHHccCCHhHCcCHHHHHh--CHHHH
Confidence 00 00000 0011235779999999999999999999998 44444
No 178
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=7.5e-39 Score=346.79 Aligned_cols=253 Identities=30% Similarity=0.443 Sum_probs=200.6
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC-CeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-NERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|+.. |+.||||+++.. ...+.+.+|++++++++||||+++++++.+. +..++||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~ 94 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND----ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 94 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC----C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch----hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence 368899999999999999999886 889999998754 2346789999999999999999999997654 4689999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++..... ..+++..+..++.|++.||+||| +++|+||||||+||+++.++.+||+|||+++...
T Consensus 95 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~ 168 (278)
T 1byg_A 95 EYMAKGSLVDYLRSRGR---SVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 168 (278)
T ss_dssp CCCTTEEHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----
T ss_pred ecCCCCCHHHHHHhccc---ccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccc
Confidence 99999999999976322 34789999999999999999999 7899999999999999999999999999988543
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
.. .....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+.. ..+. ...
T Consensus 169 ~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~------~~~~-------~~~ 231 (278)
T 1byg_A 169 ST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV------PRVE-------KGY 231 (278)
T ss_dssp -----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHH------HHHT-------TTC
T ss_pred cc----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHH------HHHh-------cCC
Confidence 32 123467899999999999999999999999999999998 99999866533211 1111 111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... ......+.+++.+|++.||++||++.|+++.|+.+...
T Consensus 232 ~~~~~-----~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 232 KMDAP-----DGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp CCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCc-----ccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 11111 11224578999999999999999999999999998664
No 179
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.7e-39 Score=367.91 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=192.6
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecC-CCChHHHHHHHHHH---HHHHhcCCCceeeee-------eE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAG-VTTTKALDEFQSEI---AVLSKVRHRHLVSLL-------GY 691 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~-~~~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 691 (973)
.++|...+.||+|+||.||+|+. .+|+.||||++... .......+.+.+|+ +++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 36788899999999999999986 56999999999743 22344567899999 455556899999998 66
Q ss_pred EEeCC-----------------eEEEEEEecCCCCHHHHHHhhhhccC--CCCCHHHHHHHHHHHHHHHHHHHhhccCCe
Q 041143 692 SIEGN-----------------ERLLVYEYMPHGALSRHLFRWEKLQL--KPLSWTRRLSIALDVARGMEYLHCLARQTF 752 (973)
Q Consensus 692 ~~~~~-----------------~~~lV~e~~~~g~L~~~l~~~~~~~~--~~l~~~~~~~i~~~ia~gl~~LH~~~~~~i 752 (973)
+.+.+ ..++||||+ +|+|.+++........ ..++|..++.|+.||++||+||| +++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 65543 278999999 7899999986433221 34557889999999999999999 7899
Q ss_pred eeccCCCCcEEECCCCCEEEeeccccccCCCCCcceecccccccCcccccccccC-----------cCCCchhHHhHHHH
Q 041143 753 IHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-----------KITTKADVFSYGVV 821 (973)
Q Consensus 753 vH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~S~Gvv 821 (973)
+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 9999999999999999999999999986432 3345678 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 822 LMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 822 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
+|||++|+.||........ ....... .. . ....+.+++.+||+.||++||++.|+++
T Consensus 303 l~elltg~~Pf~~~~~~~~----------------~~~~~~~-~~--~----~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGG----------------SEWIFRS-CK--N----IPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp HHHHHHSSCCC------CC----------------SGGGGSS-CC--C----CCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred HHHHHHCCCCCcccccccc----------------hhhhhhh-cc--C----CCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 9999999999975432110 1111111 00 1 1234779999999999999999999997
No 180
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=5.5e-39 Score=356.63 Aligned_cols=273 Identities=19% Similarity=0.283 Sum_probs=197.6
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
...++|...+.||+|+||.||+|... +++.||||+++.........+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34578999999999999999999764 68899999997654444556678899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE-----CCCCCEEEeec
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL-----DDDYRAKVSDF 775 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill-----~~~~~~kl~Df 775 (973)
||||++ |+|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+|||+ ++++.+||+||
T Consensus 111 v~e~~~-~~L~~~~~~-----~~~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Df 181 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDK-----NPDVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDF 181 (329)
T ss_dssp EEECCS-EEHHHHHHH-----CTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCT
T ss_pred EEecCC-CCHHHHHhh-----cCCCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcC
Confidence 999997 599999865 245899999999999999999999 7899999999999999 45566999999
Q ss_pred cccccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 776 GLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 776 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
|+++...... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+. +...+.......
T Consensus 182 g~a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~--~~~~~~~~~~~~ 258 (329)
T 3gbz_A 182 GLARAFGIPI-RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQ--LFKIFEVLGLPD 258 (329)
T ss_dssp THHHHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCC
T ss_pred CCccccCCcc-cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHH--HHHHHHHhCCCc
Confidence 9998654322 223445789999999999874 489999999999999999999999987654332 111111110000
Q ss_pred h-H------HHhhcCccccCCcccHH------HHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 855 E-K------FKAAIDPALEVNEETFE------SISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 855 ~-~------~~~~~~~~l~~~~~~~~------~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
. . ................. ....+.+++.+|++.||++|||+.|+++ +++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~f~ 323 (329)
T 3gbz_A 259 DTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE--HPYFS 323 (329)
T ss_dssp TTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT--SGGGS
T ss_pred hhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC--CcccC
Confidence 0 0 00000000000000000 1245789999999999999999999998 65554
No 181
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=7.9e-39 Score=373.85 Aligned_cols=257 Identities=25% Similarity=0.363 Sum_probs=205.0
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 67888899999999999999875 689999999864311 1122457889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|..++..... ....+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++...
T Consensus 265 E~~~gg~L~~~l~~~~~-~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDE-DNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp CCCTTCBHHHHHHTSST-TSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EeccCCCHHHHHHHhhc-ccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999976322 2356899999999999999999999 7899999999999999999999999999998665
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||........ .......+..
T Consensus 341 ~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~--~~~~~~~i~~---------- 407 (543)
T 3c4z_A 341 AGQT-KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKELKQRVLE---------- 407 (543)
T ss_dssp TTCC-CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCC--HHHHHHHHHH----------
T ss_pred CCCc-ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchh--HHHHHHHHhh----------
Confidence 4332 23446899999999999999999999999999999999999999986532111 0111111111
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH-----hHHHH
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDM-----GHVVN 901 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~-----~~v~~ 901 (973)
...... ......+.+++.+|++.||++||++ .+|.+
T Consensus 408 ~~~~~p---~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 408 QAVTYP---DKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp CCCCCC---TTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred cccCCC---cccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence 111100 1112457799999999999999976 55654
No 182
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=351.51 Aligned_cols=263 Identities=25% Similarity=0.354 Sum_probs=204.6
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe----CCeE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE----GNER 698 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 698 (973)
.++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++.. ....
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 105 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH--EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEA 105 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC--CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCcee
Confidence 36899999999999999999987 57899999998654 45667789999999999999999999999873 3467
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccc
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLV 778 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla 778 (973)
++||||+++|+|.+++..... ....+++.+++.++.||++||+||| +++|+||||||+||+++.++.+||+|||++
T Consensus 106 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIERLKD-KGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEEECCTTCBHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEEeCCCCcHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 899999999999999976433 3367999999999999999999999 789999999999999999999999999998
Q ss_pred ccCCCCCcc--------eecccccccCcccccccccCc---CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 779 KLAPDGEKS--------VVTRLAGTFGYLAPEYAVMGK---ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 779 ~~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
+........ ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||........ ....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~-- 258 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-SVAL-- 258 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-CHHH--
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-hhhH--
Confidence 754321110 012345799999999987543 78999999999999999999999853111000 0000
Q ss_pred HHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 848 WRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
. ..... ... ........+.+++.+|++.||.+||++.+|++.|+.+..
T Consensus 259 -~-------~~~~~--~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 259 -A-------VQNQL--SIP---QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp -H-------HHCC----CC---CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred -H-------hhccC--CCC---ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 0 00000 000 001122458899999999999999999999999987754
No 183
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.8e-38 Score=371.94 Aligned_cols=261 Identities=25% Similarity=0.362 Sum_probs=208.3
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|+.. +|+.||||++............+.+|++++++++|||||++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 4578999999999999999999875 689999999864322223356789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC---CCCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD---DDYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~---~~~~~kl~DfGla 778 (973)
|||+++|+|.+++... ..+++.++..++.||+.||+||| +++|+||||||+|||++ .++.+||+|||++
T Consensus 100 ~e~~~~~~L~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a 171 (486)
T 3mwu_A 100 GELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (486)
T ss_dssp ECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCT
T ss_pred EEcCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcC
Confidence 9999999999988652 46899999999999999999999 78999999999999995 4567999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
+...... ......||+.|+|||++.+ .++.++||||+||++|||++|+.||......+. ...+....
T Consensus 172 ~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~------~~~i~~~~---- 238 (486)
T 3mwu_A 172 TCFQQNT--KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDI------LKRVETGK---- 238 (486)
T ss_dssp TTBCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTC----
T ss_pred eECCCCC--ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhCC----
Confidence 8654432 2345679999999998865 599999999999999999999999987654321 11111100
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
..... .........+.+++.+|++.||.+|||+.|+++ +++++.+.
T Consensus 239 --~~~~~---~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~--hp~~~~~~ 284 (486)
T 3mwu_A 239 --YAFDL---PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE--HPWIQKYS 284 (486)
T ss_dssp --CCSCS---GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH--CHHHHHTC
T ss_pred --CCCCC---cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc--CHhhccCc
Confidence 00000 000112245779999999999999999999998 77776644
No 184
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=4e-38 Score=353.28 Aligned_cols=272 Identities=20% Similarity=0.307 Sum_probs=206.2
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC--------
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-------- 695 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-------- 695 (973)
++|...+.||+|+||.||+|+. .+|+.||||++............+.+|++++++++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 6899999999999999999987 4789999999866544444455788999999999999999999999873
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeec
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDF 775 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~Df 775 (973)
+..++||||++ |+|.+.+... ...+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+||
T Consensus 97 ~~~~lv~e~~~-~~l~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Df 168 (351)
T 3mi9_A 97 GSIYLVFDFCE-HDLAGLLSNV----LVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADF 168 (351)
T ss_dssp CEEEEEEECCS-EEHHHHHHCT----TSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCC
T ss_pred ceEEEEEeccC-CCHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccc
Confidence 46899999996 4787777542 245899999999999999999999 789999999999999999999999999
Q ss_pred cccccCCCCC---cceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHh
Q 041143 776 GLVKLAPDGE---KSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIK 851 (973)
Q Consensus 776 Gla~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 851 (973)
|+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+..... ....
T Consensus 169 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i---~~~~ 245 (351)
T 3mi9_A 169 GLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALI---SQLC 245 (351)
T ss_dssp TTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH---HHHH
T ss_pred hhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH---HHHh
Confidence 9998654221 222345678999999998876 45899999999999999999999999876644322211 1111
Q ss_pred hc-h-hHHHhhcC----ccc---cCC-cccHHH------HHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 852 SS-K-EKFKAAID----PAL---EVN-EETFES------ISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 852 ~~-~-~~~~~~~~----~~l---~~~-~~~~~~------~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. . ......-. ..+ ... ....+. ...+.+++.+|++.||++|||++|+++ ++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~f~~ 317 (351)
T 3mi9_A 246 GSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN--HDFFWS 317 (351)
T ss_dssp CCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGGS
T ss_pred CCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC--CCCcCC
Confidence 00 0 00000000 000 000 000111 134779999999999999999999998 666653
No 185
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-39 Score=363.09 Aligned_cols=255 Identities=26% Similarity=0.366 Sum_probs=201.8
Q ss_pred hcCccccCcccccCccEEEEEEE----CCCCEEEEEEeecCCC--ChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCC
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL----EDGTKIAVKRMEAGVT--TTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~----~~g~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 696 (973)
.++|...+.||+|+||.||+|+. .+|+.||||+++.... .....+.+.+|+++++++ +||||+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999987 3689999999864311 112234577899999999 6999999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
..++||||+++|+|.+++... ..+++.++..++.||++||+||| +++|+||||||+|||++.++.+||+|||
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG 204 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQR-----ERFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFG 204 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred eEEEEeecCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCC
Confidence 999999999999999999752 45899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCccccccccc--CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVM--GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
+++..............||+.|+|||++.+ ..++.++|||||||++|||++|+.||......... .........
T Consensus 205 ~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~--~~~~~~~~~-- 280 (355)
T 1vzo_A 205 LSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQ--AEISRRILK-- 280 (355)
T ss_dssp EEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCH--HHHHHHHHH--
T ss_pred CCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchH--HHHHHHHhc--
Confidence 998655433333445689999999999985 34789999999999999999999999754322111 111111111
Q ss_pred hHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCC-----CHhHHHH
Q 041143 855 EKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRP-----DMGHVVN 901 (973)
Q Consensus 855 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RP-----s~~~v~~ 901 (973)
..+.+. ......+.+++.+|++.||++|| ++.|+++
T Consensus 281 ------~~~~~~-----~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~ 321 (355)
T 1vzo_A 281 ------SEPPYP-----QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321 (355)
T ss_dssp ------CCCCCC-----TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred ------cCCCCC-----cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence 011111 11224477999999999999999 8899887
No 186
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.8e-38 Score=361.36 Aligned_cols=256 Identities=22% Similarity=0.268 Sum_probs=193.2
Q ss_pred cCcccc-CcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHh-cCCCceeeeeeEEEe----CCe
Q 041143 625 QNFAQE-NELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSK-VRHRHLVSLLGYSIE----GNE 697 (973)
Q Consensus 625 ~~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~----~~~ 697 (973)
++|... +.||+|+||+||+|... +|+.||||+++.. ..+.+|++++.+ .+||||+++++++.. ...
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-------~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~ 133 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 133 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-------hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcE
Confidence 456665 68999999999999875 6899999998642 356788888755 589999999999876 556
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEEee
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKVSD 774 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl~D 774 (973)
.++||||+++|+|.+++... ....+++.++..|+.||+.||+||| +.+|+||||||+|||++. ++.+||+|
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~---~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~D 207 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDR---GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTD 207 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC------CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECC
T ss_pred EEEEEEeCCCCcHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEe
Confidence 89999999999999999752 2246899999999999999999999 789999999999999998 78999999
Q ss_pred ccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHH-HHHHHHHHHhhc
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESR-YLAEWFWRIKSS 853 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~-~~~~~~~~~~~~ 853 (973)
||+++...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||......... ... ..+...
T Consensus 208 FG~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~---~~i~~~ 282 (400)
T 1nxk_A 208 FGFAKETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK---TRIRMG 282 (400)
T ss_dssp CTTCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH---HHHHHT
T ss_pred cccccccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH---HHHHcC
Confidence 99998654322 234568999999999999999999999999999999999999999765432110 000 011100
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
. .-.+... .......+.+++.+||+.||++||++.||++ +.++..
T Consensus 283 ~-----~~~~~~~----~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~--hp~~~~ 327 (400)
T 1nxk_A 283 Q-----YEFPNPE----WSEVSEEVKMLIRNLLKTEPTQRMTITEFMN--HPWIMQ 327 (400)
T ss_dssp C-----CCCCTTT----TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH--SHHHHT
T ss_pred c-----ccCCCcc----cccCCHHHHHHHHHHCCCChhHCcCHHHHhc--CccccC
Confidence 0 0000000 0112245789999999999999999999998 566543
No 187
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=356.83 Aligned_cols=272 Identities=25% Similarity=0.405 Sum_probs=209.4
Q ss_pred cCccccCcccccCccEEEEEEE-----CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCC--e
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-----EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGN--E 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~ 697 (973)
++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++++++++||||+++++++...+ .
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 118 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS--TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN 118 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC--CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence 5788899999999999999984 36889999998754 4556678999999999999999999999987654 6
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++|+|.+++... ...+++.+++.++.||++||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 119 ~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~ 191 (326)
T 2w1i_A 119 LKLIMEYLPYGSLRDYLQKH----KERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGL 191 (326)
T ss_dssp CEEEECCCTTCBHHHHHHHS----TTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred eEEEEECCCCCCHHHHHHhc----ccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcc
Confidence 79999999999999999752 245899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcce--ecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc--
Q 041143 778 VKLAPDGEKSV--VTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS-- 853 (973)
Q Consensus 778 a~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-- 853 (973)
++......... .....++..|+|||.+.+..++.++|||||||++|||++|+.|+......- ..........
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~----~~~~~~~~~~~~ 267 (326)
T 2w1i_A 192 TKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEF----MRMIGNDKQGQM 267 (326)
T ss_dssp CEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHH----HHHHCTTCCTHH
T ss_pred hhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHH----HHhhccccchhh
Confidence 98665433221 233457888999999998899999999999999999999999876421100 0000000000
Q ss_pred -hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 854 -KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 854 -~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
...+.+.+..... ..........+.+++.+|++.||++||++.||++.|+.+.++.
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 268 IVFHLIELLKNNGR-LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHHHHHHHHTTCC-CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCC-CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0001111111100 0011122345889999999999999999999999999987653
No 188
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.2e-38 Score=359.02 Aligned_cols=270 Identities=21% Similarity=0.328 Sum_probs=210.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +|+.||+|+++.. ......+.+.+|++++++++||||+++++++..++..++||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 110 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE-IKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM 110 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc-cCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEE
Confidence 357999999999999999999876 6899999999765 34556678999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ..+++..+..++.|++.||+|||+ .++|+||||||+||+++.++.+||+|||+++...
T Consensus 111 e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 183 (360)
T 3eqc_A 111 EHMDGGSLDQVLKKA-----GRIPEQILGKVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI 183 (360)
T ss_dssp CCCTTCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH--HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHH
T ss_pred ECCCCCCHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHH--hCCEEcCCccHHHEEECCCCCEEEEECCCCcccc
Confidence 999999999999652 458999999999999999999993 2389999999999999999999999999987442
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH---------HHHh--
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF---------WRIK-- 851 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~---------~~~~-- 851 (973)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+........ ....
T Consensus 184 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
T 3eqc_A 184 DS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTP 260 (360)
T ss_dssp HH---C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-----------------
T ss_pred cc---cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccC
Confidence 21 223457999999999999999999999999999999999999999876543322111000 0000
Q ss_pred ------------------hchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 852 ------------------SSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 852 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
...........+... .......+.+++.+|++.||++|||+.|+++ +++++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~~~~~ 331 (360)
T 3eqc_A 261 GRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLP----SGVFSLEFQDFVNKCLIKNPAERADLKQLMV--HAFIKRS 331 (360)
T ss_dssp -------------CCCHHHHHHHHHHSCCCCCC----TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT--SHHHHHH
T ss_pred CCcccccccCCCCcccchhhhhHHhccCCCCCC----cccccHHHHHHHHHHhhcChhhCCCHHHHhh--ChHhhcc
Confidence 000000000011111 0011235789999999999999999999998 7777653
No 189
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.8e-38 Score=344.84 Aligned_cols=251 Identities=25% Similarity=0.434 Sum_probs=205.2
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe------
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE------ 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------ 694 (973)
....+|...+.||+|+||.||+|... +|+.||||+++... +.+.+|++++++++||||+++++++..
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 8 RFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 34578999999999999999999886 78999999997542 356789999999999999999998864
Q ss_pred ----------CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE
Q 041143 695 ----------GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL 764 (973)
Q Consensus 695 ----------~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill 764 (973)
....++||||+++|+|.+++.... ...+++..++.++.||+.||+||| +.+|+||||||+||++
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 155 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR---GEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFL 155 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGG---GSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhcc---CCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEE
Confidence 345799999999999999997632 256899999999999999999999 7899999999999999
Q ss_pred CCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHH
Q 041143 765 DDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLA 844 (973)
Q Consensus 765 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~ 844 (973)
+.++.+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|..|+... .
T Consensus 156 ~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-----~--- 225 (284)
T 2a19_B 156 VDTKQVKIGDFGLVTSLKNDG--KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-----S--- 225 (284)
T ss_dssp EETTEEEECCCTTCEESSCCS--CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-----H---
T ss_pred cCCCCEEECcchhheeccccc--cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-----H---
Confidence 999999999999998655432 223457999999999999999999999999999999999998876311 0
Q ss_pred HHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 845 EWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+..... ...+...+ ...+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 226 ~~~~~~~------~~~~~~~~---------~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~ 275 (284)
T 2a19_B 226 KFFTDLR------DGIISDIF---------DKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKS 275 (284)
T ss_dssp HHHHHHH------TTCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred HHHHHhh------cccccccC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhC
Confidence 1111111 01111111 13467999999999999999999999999988664
No 190
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=7.2e-39 Score=355.36 Aligned_cols=266 Identities=24% Similarity=0.349 Sum_probs=209.6
Q ss_pred HHHHhcCcccc-CcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCC
Q 041143 620 LRKVTQNFAQE-NELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGN 696 (973)
Q Consensus 620 ~~~~~~~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~ 696 (973)
.+...++|... +.||+|+||.||+|... +|+.||||+++...........+.+|+.++.+++ ||||+++++++.+.+
T Consensus 23 ~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~ 102 (327)
T 3lm5_A 23 MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTS 102 (327)
T ss_dssp HHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSS
T ss_pred HHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCC
Confidence 35566778877 88999999999999876 5899999999765444445678899999999994 799999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEEe
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKVS 773 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl~ 773 (973)
..++||||+++|+|.+++.. .....+++.++..++.|++.||+||| +++|+||||||+||+++. ++.+||+
T Consensus 103 ~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~ 176 (327)
T 3lm5_A 103 EIILILEYAAGGEIFSLCLP---ELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIV 176 (327)
T ss_dssp EEEEEEECCTTEEGGGGGSS---CC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEEC
T ss_pred eEEEEEEecCCCcHHHHHHH---hcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEe
Confidence 99999999999999988743 22356899999999999999999999 789999999999999998 7899999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+... .+...
T Consensus 177 Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~------~i~~~ 248 (327)
T 3lm5_A 177 DFGMSRKIGHAC--ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYL------NISQV 248 (327)
T ss_dssp CGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH------HHHHT
T ss_pred eCccccccCCcc--ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHH------HHHhc
Confidence 999998664332 2344679999999999999999999999999999999999999998765432211 11100
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
..+... .........+.+++.+|++.||++||++.|+++ +++++.+
T Consensus 249 ------~~~~~~---~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~--h~~~~~~ 294 (327)
T 3lm5_A 249 ------NVDYSE---ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS--HSWLQQW 294 (327)
T ss_dssp ------CCCCCT---TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT--CGGGCCC
T ss_pred ------ccccCc---hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC--CHhhccc
Confidence 000000 001112245779999999999999999999998 6666643
No 191
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=2.3e-38 Score=371.52 Aligned_cols=258 Identities=24% Similarity=0.368 Sum_probs=202.2
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|+.. ++..||||+++.........+.+.+|+++++.++|||||++++++.+....++|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3467999999999999999999875 688999999976543333456789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC---CCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD---YRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~---~~~kl~DfGla 778 (973)
|||+++|+|.+++... ..+++..+..++.||+.||+||| +++|+||||||+|||++.. +.+||+|||++
T Consensus 115 ~e~~~~g~L~~~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a 186 (494)
T 3lij_A 115 MECYKGGELFDEIIHR-----MKFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLS 186 (494)
T ss_dssp EECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCC
Confidence 9999999999988652 45899999999999999999999 7899999999999999764 55999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
+...... ......||+.|+|||++. +.++.++||||+||++|||++|+.||......+. ...+......
T Consensus 187 ~~~~~~~--~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~------~~~i~~~~~~-- 255 (494)
T 3lij_A 187 AVFENQK--KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEI------LRKVEKGKYT-- 255 (494)
T ss_dssp EECBTTB--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHTCCC--
T ss_pred eECCCCc--cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHhCCCC--
Confidence 8654432 234567999999999875 5799999999999999999999999987654321 1111111000
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+.. ......+.+++.+|++.||.+|||+.|+++ +++++
T Consensus 256 -~~~~~~------~~~s~~~~~li~~~L~~dp~~R~s~~e~l~--hp~~~ 296 (494)
T 3lij_A 256 -FDSPEW------KNVSEGAKDLIKQMLQFDSQRRISAQQALE--HPWIK 296 (494)
T ss_dssp -CCSGGG------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--CHHHH
T ss_pred -CCchhc------ccCCHHHHHHHHHHCCCChhhCccHHHHhc--Ccccc
Confidence 000111 112245779999999999999999999987 44443
No 192
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=360.22 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=190.9
Q ss_pred HhcCccc-cCcccccCccEEEEEEEC---CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe--CC
Q 041143 623 VTQNFAQ-ENELGRGGFGTVYKGELE---DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE--GN 696 (973)
Q Consensus 623 ~~~~~~~-~~~lG~G~fg~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~ 696 (973)
..+.|.. .++||+|+||.||+|+.. +++.||||++...... +.+.+|++++++++|||||++++++.. ..
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~----~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~ 93 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGIS----MSACREIALLRELKHPNVISLQKVFLSHADR 93 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCC----HHHHHHHHHHHHCCCTTBCCCCEEEEETTTT
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCC----HHHHHHHHHHHhcCCCCeeeEeeEEecCCCC
Confidence 3455666 458999999999999865 5788999999754222 357899999999999999999999965 66
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhcc----CCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE----CCCC
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQ----LKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL----DDDY 768 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~----~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill----~~~~ 768 (973)
..++||||++ |+|.+++....... ...+++..+..|+.||+.||+||| +.+|+||||||+|||+ +.++
T Consensus 94 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~ 169 (405)
T 3rgf_A 94 KVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERG 169 (405)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTT
T ss_pred eEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCC
Confidence 8899999995 68888886533221 224899999999999999999999 7899999999999999 7789
Q ss_pred CEEEeeccccccCCCCCc--ceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhh------
Q 041143 769 RAKVSDFGLVKLAPDGEK--SVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEE------ 839 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~------ 839 (973)
.+||+|||+++....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~ 249 (405)
T 3rgf_A 170 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPY 249 (405)
T ss_dssp CEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCC
T ss_pred cEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccc
Confidence 999999999986543221 22345689999999999887 458999999999999999999999997654321
Q ss_pred -HHHHHHHHHHHhhchh-------------HHHhhcC-ccccCCcccHH--------HHHHHHHHHHHhhccCCCCCCCH
Q 041143 840 -SRYLAEWFWRIKSSKE-------------KFKAAID-PALEVNEETFE--------SISIVAELAGHCTAREPYHRPDM 896 (973)
Q Consensus 840 -~~~~~~~~~~~~~~~~-------------~~~~~~~-~~l~~~~~~~~--------~~~~~~~l~~~cl~~dP~~RPs~ 896 (973)
...+...+........ .+...+. .... ...... ....+.+|+.+||+.||++|||+
T Consensus 250 ~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta 328 (405)
T 3rgf_A 250 HHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYT-NCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITS 328 (405)
T ss_dssp CHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGT-TCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCH
T ss_pred hHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCC-cchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCH
Confidence 1111111111100000 0000000 0000 000000 02347799999999999999999
Q ss_pred hHHHHHHHHhhhhcC
Q 041143 897 GHVVNVLSPLVEKWR 911 (973)
Q Consensus 897 ~~v~~~L~~~~~~~~ 911 (973)
.|+++ ++++....
T Consensus 329 ~e~L~--hp~f~~~~ 341 (405)
T 3rgf_A 329 EQAMQ--DPYFLEDP 341 (405)
T ss_dssp HHHHT--SGGGTSSS
T ss_pred HHHhc--ChhhccCC
Confidence 99999 88876543
No 193
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=356.39 Aligned_cols=272 Identities=23% Similarity=0.338 Sum_probs=201.4
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|...+.||+|+||.||+|+.. +++.||||+++... .......+.+|++++++++||||+++++++...+..++|||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEH-EEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFE 80 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC-------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccc-ccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEec
Confidence 57899999999999999999876 68999999986542 12222245679999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|++ |+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 81 ~~~-~~l~~~~~~~----~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~ 152 (324)
T 3mtl_A 81 YLD-KDLKQYLDDC----GNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSI 152 (324)
T ss_dssp CCS-EEHHHHHHHT----TTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC--
T ss_pred ccc-cCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccC
Confidence 996 6999988652 246899999999999999999999 78999999999999999999999999999985543
Q ss_pred CCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc---------
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS--------- 853 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~--------- 853 (973)
.. .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+... .+......
T Consensus 153 ~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~---~i~~~~~~~~~~~~~~~ 228 (324)
T 3mtl_A 153 PT-KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLH---FIFRILGTPTEETWPGI 228 (324)
T ss_dssp -----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH---HHHHHHCCCCTTTSTTG
T ss_pred Cc-cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH---HHHHHhCCCChHhchhh
Confidence 22 22344578999999999876 568999999999999999999999998776443221 11111100
Q ss_pred --hhHHHhhcCccccCCc---ccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 854 --KEKFKAAIDPALEVNE---ETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 854 --~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
.........+...... ........+.+++.+|++.||++|||+.|+++ ++++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~f~~~~ 289 (324)
T 3mtl_A 229 LSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK--HPFFLSLG 289 (324)
T ss_dssp GGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT--SGGGGGGC
T ss_pred hcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc--Chhhhhcc
Confidence 0000011011100000 00011245789999999999999999999998 77766543
No 194
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.1e-38 Score=347.64 Aligned_cols=261 Identities=23% Similarity=0.322 Sum_probs=193.3
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|+..+.||+|+||.||+|+. .+|+.||||+++.........+.+.++...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 46899999999999999999987 46899999999765444444445555666678889999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC-CeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ-TFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~-~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
||++ |+|.+++..... ....+++..+..++.|++.||+||| ++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 86 e~~~-~~l~~~l~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVID-KGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp ECCS-EEHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred ehhc-cchHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9996 599888865333 3367999999999999999999999 65 9999999999999999999999999999865
Q ss_pred CCCCcceecccccccCccccccc----ccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYA----VMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
.... ......||+.|+|||++ ....++.++|||||||++|||++|+.||........ .+.. ..
T Consensus 161 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~----~~------ 227 (290)
T 3fme_A 161 VDDV--AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-QLKQ----VV------ 227 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-HHHH----HH------
T ss_pred cccc--cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH-HHHH----Hh------
Confidence 4432 22334799999999996 566789999999999999999999999976432211 1110 00
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....+..... .....+.+++.+|++.||++|||+.|+++ +++++.
T Consensus 228 -~~~~~~~~~~----~~~~~~~~li~~~l~~~p~~Rpt~~e~l~--hp~f~~ 272 (290)
T 3fme_A 228 -EEPSPQLPAD----KFSAEFVDFTSQCLKKNSKERPTYPELMQ--HPFFTL 272 (290)
T ss_dssp -HSCCCCCCTT----TSCHHHHHHHHHHTCSSGGGSCCHHHHTT--SHHHHH
T ss_pred -ccCCCCcccc----cCCHHHHHHHHHHhhcChhhCcCHHHHHh--Cccccc
Confidence 0011111101 12245789999999999999999999998 555543
No 195
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=5.5e-38 Score=344.68 Aligned_cols=257 Identities=24% Similarity=0.408 Sum_probs=206.6
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|...+.||+|+||.||+|+.. +|+.||+|+++.. .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKS--PAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC--------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecc--cccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 4578999999999999999999875 6899999999754 223345788999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeecccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGLV 778 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGla 778 (973)
|||+++|+|.+++... ..+++.++..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 85 ~e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~ 156 (304)
T 2jam_A 85 MQLVSGGELFDRILER-----GVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLS 156 (304)
T ss_dssp ECCCCSCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTT
T ss_pred EEcCCCccHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcc
Confidence 9999999999998652 45899999999999999999999 7899999999999999 78899999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
+..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. ...+......
T Consensus 157 ~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~i~~~~~~-- 225 (304)
T 2jam_A 157 KMEQNG---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKL------FEKIKEGYYE-- 225 (304)
T ss_dssp CCCCCB---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHHCCCC--
T ss_pred eecCCC---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHH------HHHHHcCCCC--
Confidence 754432 22345699999999999999999999999999999999999999986653221 1111111000
Q ss_pred hhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 AAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... .......+.+++.+|++.||++||++.|+++ +++++.
T Consensus 226 --~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~--h~~~~~ 267 (304)
T 2jam_A 226 --FESPF-----WDDISESAKDFICHLLEKDPNERYTCEKALS--HPWIDG 267 (304)
T ss_dssp --CCTTT-----TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT--SHHHHS
T ss_pred --CCccc-----cccCCHHHHHHHHHHcCCChhHCcCHHHHhc--CccccC
Confidence 00000 0112245789999999999999999999998 666654
No 196
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=6.7e-38 Score=353.78 Aligned_cols=273 Identities=20% Similarity=0.326 Sum_probs=208.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE----
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER---- 698 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 698 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|+.++++++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 368999999999999999999865 689999999987656666678899999999999999999999999877654
Q ss_pred --EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 699 --LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 699 --~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
++||||+. |+|.+++. ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||
T Consensus 121 ~~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg 189 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG-------MEFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFG 189 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTT
T ss_pred eEEEEEcccc-ccHHHHhh-------cCCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecC
Confidence 99999996 68877662 34899999999999999999999 7899999999999999999999999999
Q ss_pred ccccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchh
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKE 855 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 855 (973)
+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+.. ............
T Consensus 190 ~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~--~~i~~~~~~~~~ 263 (371)
T 4exu_A 190 LARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQL--TQILKVTGVPGT 263 (371)
T ss_dssp CC------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHH--HHHHHHHCCCCH
T ss_pred cccccccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHH--HHHHHHhCCCcH
Confidence 99855332 334678999999999887 78999999999999999999999999876543221 111111000000
Q ss_pred HH------------HhhcCccccCC--cccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCC
Q 041143 856 KF------------KAAIDPALEVN--EETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITD 915 (973)
Q Consensus 856 ~~------------~~~~~~~l~~~--~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~ 915 (973)
.. ...+....... .........+.+++.+|++.||++||++.|+++ +++++.+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~f~~~~~~~~ 335 (371)
T 4exu_A 264 EFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT--HPFFEPFRDPEE 335 (371)
T ss_dssp HHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT--SGGGTTTCCGGG
T ss_pred HHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc--CcccccCCCccc
Confidence 00 00000000000 000112346889999999999999999999998 788776554433
No 197
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.5e-38 Score=342.26 Aligned_cols=254 Identities=24% Similarity=0.375 Sum_probs=204.9
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
..++|+..+.||+|+||.||+|... +++.||||++.... .....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKR-AVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGG-CTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeecc-chhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 4478999999999999999999875 68999999987542 234457889999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++.. ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 84 ~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~ 155 (276)
T 2yex_A 84 LEYCSGGELFDRIEP-----DIGMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVF 155 (276)
T ss_dssp EECCTTEEGGGGSBT-----TTBCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEecCCCcHHHHHhh-----ccCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCcccc
Confidence 999999999988743 246899999999999999999999 789999999999999999999999999999854
Q ss_pred CCCC-cceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 782 PDGE-KSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 782 ~~~~-~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
.... ........||+.|+|||.+.+..+ +.++||||||+++|||++|+.||........ ....|. ....
T Consensus 156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~----~~~~---- 226 (276)
T 2yex_A 156 RYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ-EYSDWK----EKKT---- 226 (276)
T ss_dssp EETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH-HHHHHH----TTCT----
T ss_pred CCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH-HHHHhh----hccc----
Confidence 3222 122345679999999999987765 6789999999999999999999986553221 111111 0000
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
...+ .......+.+++.+|++.||++||++.||++
T Consensus 227 ~~~~-------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 227 YLNP-------WKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp TSTT-------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ccCc-------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0000 0011234779999999999999999999987
No 198
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=343.60 Aligned_cols=256 Identities=26% Similarity=0.442 Sum_probs=185.6
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|+. .+|+.||||++..... .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 36799999999999999999987 4789999999864311 111236789999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++++|.+++.. ....+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 90 ~e~~~~~~L~~~l~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~ 162 (278)
T 3cok_A 90 LEMCHNGEMNRYLKN----RVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQL 162 (278)
T ss_dssp EECCTTEEHHHHHHT----CSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EecCCCCcHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeec
Confidence 999999999999864 2256899999999999999999999 789999999999999999999999999999865
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||......+. .....
T Consensus 163 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----------------~~~~~ 225 (278)
T 3cok_A 163 KMPHE-KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT----------------LNKVV 225 (278)
T ss_dssp C-----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------------------CC
T ss_pred cCCCC-cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----------------HHHHh
Confidence 43222 12345799999999999988999999999999999999999999976543211 11111
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
........ .....+.+++.+|++.||++||++.++++ ++++.
T Consensus 226 ~~~~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~~l~--h~~~~ 267 (278)
T 3cok_A 226 LADYEMPS---FLSIEAKDLIHQLLRRNPADRLSLSSVLD--HPFMS 267 (278)
T ss_dssp SSCCCCCT---TSCHHHHHHHHHHSCSSGGGSCCHHHHTT--STTTC
T ss_pred hcccCCcc---ccCHHHHHHHHHHcccCHhhCCCHHHHhc--Ccccc
Confidence 11111111 11235779999999999999999999997 44443
No 199
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=7e-38 Score=343.74 Aligned_cols=254 Identities=26% Similarity=0.458 Sum_probs=209.1
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
+.|...+.||+|+||.||+|... +++.||||++..... ....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEA-EDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTC-STTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccccc-HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 57889999999999999999764 689999999976532 3345789999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++++|.+++.. ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 101 ~~~~~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 171 (303)
T 3a7i_A 101 YLGGGSALDLLEP------GPLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD 171 (303)
T ss_dssp CCTTEEHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBT
T ss_pred eCCCCcHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCc
Confidence 9999999998853 46899999999999999999999 78999999999999999999999999999986543
Q ss_pred CCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDP 863 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (973)
.. .......||+.|+|||++.+..++.++||||||+++|||++|+.||.......... .+ .....+
T Consensus 172 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~------~~-------~~~~~~ 237 (303)
T 3a7i_A 172 TQ-IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLF------LI-------PKNNPP 237 (303)
T ss_dssp TB-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH------HH-------HHSCCC
T ss_pred cc-cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHH------Hh-------hcCCCC
Confidence 32 12344679999999999999999999999999999999999999998665432111 11 111111
Q ss_pred cccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 864 ALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 864 ~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+. .. ....+.+++.+|++.||++||++.||++ +.++..
T Consensus 238 ~~~-~~----~~~~l~~li~~~l~~dp~~Rps~~~ll~--~~~~~~ 276 (303)
T 3a7i_A 238 TLE-GN----YSKPLKEFVEACLNKEPSFRPTAKELLK--HKFILR 276 (303)
T ss_dssp CCC-SS----CCHHHHHHHHHHCCSSGGGSCCHHHHTT--CHHHHH
T ss_pred CCc-cc----cCHHHHHHHHHHcCCChhhCcCHHHHhh--Chhhhc
Confidence 111 11 1234789999999999999999999998 555443
No 200
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=6.1e-38 Score=368.90 Aligned_cols=260 Identities=23% Similarity=0.355 Sum_probs=207.0
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh-----------HHHHHHHHHHHHHHhcCCCceeeeee
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT-----------KALDEFQSEIAVLSKVRHRHLVSLLG 690 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv~l~~ 690 (973)
+.++|...+.||+|+||.||+|+.. +++.||||+++...... ...+.+.+|++++++++|||||++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4578999999999999999999875 57899999987542221 23467899999999999999999999
Q ss_pred EEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC--
Q 041143 691 YSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY-- 768 (973)
Q Consensus 691 ~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~-- 768 (973)
++.+....++||||+++|+|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+|||++.++
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~ 185 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINR-----HKFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSL 185 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCC
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCC
Confidence 999999999999999999999988652 45899999999999999999999 78999999999999998775
Q ss_pred -CEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 769 -RAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 769 -~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
.+||+|||+++...... ......||+.|+|||++. +.++.++||||+||++|||++|+.||......+. +
T Consensus 186 ~~~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~------~ 256 (504)
T 3q5i_A 186 LNIKIVDFGLSSFFSKDY--KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDI------I 256 (504)
T ss_dssp SSEEECCCTTCEECCTTS--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------H
T ss_pred ccEEEEECCCCEEcCCCC--ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH------H
Confidence 69999999998665432 234567999999999876 5699999999999999999999999987654321 1
Q ss_pred HHHhhchhHHHhhcCccccCCccc-HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 848 WRIKSSKEKFKAAIDPALEVNEET-FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
..+... .+...... ......+.+++.+|++.||.+|||+.|+++ +++++++.
T Consensus 257 ~~i~~~----------~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~--h~~~~~~~ 309 (504)
T 3q5i_A 257 KKVEKG----------KYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN--SRWIKKYA 309 (504)
T ss_dssp HHHHHC----------CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHHHTC
T ss_pred HHHHcC----------CCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc--CHhhhhch
Confidence 111111 01000000 011245789999999999999999999998 77776644
No 201
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2e-38 Score=363.60 Aligned_cols=259 Identities=25% Similarity=0.357 Sum_probs=194.1
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC------ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT------TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
...++|...+.||+|+||.||+|... +++.||||++..... .......+.+|++++++++|||||++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 45689999999999999999999765 589999999865321 1122335889999999999999999999975
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC---CCEE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD---YRAK 771 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~---~~~k 771 (973)
.+..++||||+++|+|.+++.. ...+++.++..++.|++.||+||| +++|+||||||+|||++.+ +.+|
T Consensus 211 ~~~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~k 282 (419)
T 3i6u_A 211 AEDYYIVLELMEGGELFDKVVG-----NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIK 282 (419)
T ss_dssp SSEEEEEEECCTTCBGGGGTSS-----SCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEE
T ss_pred cCceEEEEEcCCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEE
Confidence 5568999999999999887753 356899999999999999999999 7899999999999999754 4599
Q ss_pred EeeccccccCCCCCcceecccccccCccccccccc---CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 772 VSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVM---GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
|+|||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ +...
T Consensus 283 l~DFG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~--~~~~-- 356 (419)
T 3i6u_A 283 ITDFGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQ-- 356 (419)
T ss_dssp ECCSSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC--HHHH--
T ss_pred EeecccceecCCC--ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH--HHHH--
Confidence 9999999866432 23345689999999999863 5678899999999999999999999976543211 1110
Q ss_pred HHhhchhHHHhhcCccccCCcc-cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEE-TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+.. ........ .......+.+++.+|++.||++||++.|+++ +++++
T Consensus 357 -i~~----------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~--hp~~~ 404 (419)
T 3i6u_A 357 -ITS----------GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR--HPWLQ 404 (419)
T ss_dssp -HHT----------TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH--SGGGC
T ss_pred -Hhc----------CCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC--CcccC
Confidence 000 00000000 0012245789999999999999999999998 55543
No 202
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=352.20 Aligned_cols=256 Identities=23% Similarity=0.304 Sum_probs=188.9
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEe--------
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIE-------- 694 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~-------- 694 (973)
.+|...+.||+|+||.||+|+.. +|+.||||++... .....+.+.+|+.++.++. ||||+++++++..
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN--EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES--SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC--chHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 57889999999999999999874 6899999998654 4556678999999999996 9999999999953
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCC--eeeccCCCCcEEECCCCCEEE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQT--FIHRDLKSSNILLDDDYRAKV 772 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~--ivH~Dikp~Nill~~~~~~kl 772 (973)
....++||||+. |+|.+++..... ...+++.+++.++.||+.||+||| ..+ |+||||||+|||++.++.+||
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMES--RGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEB
T ss_pred CceEEEEEEecC-CCHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEE
Confidence 335789999995 899999876332 356999999999999999999999 777 999999999999999999999
Q ss_pred eeccccccCCCCCcc-----------eecccccccCccccccc---ccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChh
Q 041143 773 SDFGLVKLAPDGEKS-----------VVTRLAGTFGYLAPEYA---VMGKITTKADVFSYGVVLMELLTGLAALDEERPE 838 (973)
Q Consensus 773 ~DfGla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~ 838 (973)
+|||+++........ ......||+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 259 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL 259 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH
Confidence 999999865433221 11134699999999998 5667889999999999999999999999754321
Q ss_pred hHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 839 ESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.. . ......... . .....+.+++.+|++.||++||++.|+++.|+.+.+.
T Consensus 260 ~~------~----------~~~~~~~~~-~----~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 260 RI------V----------NGKYSIPPH-D----TQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp ----------------------CCCCTT-C----CSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred Hh------h----------cCcccCCcc-c----ccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 10 0 000000000 0 0112367899999999999999999999999998765
No 203
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=6.1e-38 Score=343.53 Aligned_cols=273 Identities=23% Similarity=0.357 Sum_probs=205.4
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
++|...+.||+|+||.||+|+.. +|+.||||+++.........+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999876 68999999987543333334678899999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|++ |+|.+++.... ...+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+++....
T Consensus 83 ~~~-~~L~~~~~~~~---~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~ 155 (299)
T 2r3i_A 83 FLH-QDLKKFMDASA---LTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV 155 (299)
T ss_dssp CCS-EEHHHHHHHTT---TTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCC
T ss_pred ccc-CCHHHHHHhhh---ccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccC
Confidence 997 69999986532 245889999999999999999999 78999999999999999999999999999985543
Q ss_pred CCcceecccccccCcccccccccCc-CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH----H
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGK-ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF----K 858 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 858 (973)
.. .......||+.|+|||.+.+.. ++.++|||||||++|||++|+.||......+. +...+.......... .
T Consensus 156 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 232 (299)
T 2r3i_A 156 PV-RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ--LFRIFRTLGTPDEVVWPGVT 232 (299)
T ss_dssp CS-BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHCCCCTTTSTTGG
T ss_pred Cc-cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHH--HHHHHHHhCCCchhhhhHhh
Confidence 22 1233457899999999988765 79999999999999999999999987654322 111111111000000 0
Q ss_pred h--hcCccccC-Ccc-----cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 859 A--AIDPALEV-NEE-----TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 859 ~--~~~~~l~~-~~~-----~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
. ...+.+.. ... .......+.+++.+|++.||++||++.|+++ +++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~--hp~~~~ 289 (299)
T 2r3i_A 233 SMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA--HPFFQD 289 (299)
T ss_dssp GSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT--SGGGTT
T ss_pred cCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc--Chhhhc
Confidence 0 00000000 000 0012245789999999999999999999998 666654
No 204
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.3e-37 Score=356.92 Aligned_cols=270 Identities=23% Similarity=0.350 Sum_probs=202.5
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC----C--e
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG----N--E 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~----~--~ 697 (973)
.+|...+.||+|+||.||+|++. +|+.||||++.... +.+.+|++++++++|||||++++++... + .
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~------~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~ 127 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK------RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 127 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT------TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc------hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence 46888899999999999999885 58999999986542 1234799999999999999999998642 2 2
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC-CCEEEeecc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD-YRAKVSDFG 776 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~-~~~kl~DfG 776 (973)
.++||||+++ ++.+.+..... ....+++..+..++.||++||+||| +++|+||||||+|||++.+ +.+||+|||
T Consensus 128 ~~lv~e~~~~-~l~~~~~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 128 LNLVLDYVPE-TVYRVARHYSR-AKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEECCCE-EHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEeehhcccc-cHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccch
Confidence 5689999965 77776655332 2367999999999999999999999 8899999999999999965 678999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc-h
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS-K 854 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~ 854 (973)
+++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+ .+...+...... .
T Consensus 203 ~a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~--~l~~i~~~lg~p~~ 278 (420)
T 1j1b_A 203 SAKQLVRGEP--NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD--QLVEIIKVLGTPTR 278 (420)
T ss_dssp TCEECCTTCC--CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHHHCSCCH
T ss_pred hhhhcccCCC--ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhCCCCH
Confidence 9986544322 2346799999999998764 79999999999999999999999998765432 222222211110 1
Q ss_pred hHHHhhcCcccc---C---CcccH------HHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 855 EKFKAAIDPALE---V---NEETF------ESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 855 ~~~~~~~~~~l~---~---~~~~~------~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
+.+... ++.+. . ....+ .....+.+|+.+||+.||++||++.|+++ +.+++.+..
T Consensus 279 ~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~--hp~f~~~~~ 345 (420)
T 1j1b_A 279 EQIREM-NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA--HSFFDELRD 345 (420)
T ss_dssp HHHHHH-CSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGGGGGC
T ss_pred HHHHhh-ChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC--CHhhccccc
Confidence 111111 11110 0 00011 11246889999999999999999999998 777765543
No 205
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.8e-38 Score=352.94 Aligned_cols=261 Identities=23% Similarity=0.337 Sum_probs=203.7
Q ss_pred hcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHH-HHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAV-LSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|+. .+|+.||||+++...... ...++..|+.+ ++.++||||+++++++...+..++|
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQ-EQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCH-HHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcH-HHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 46788899999999999999987 468999999997654443 34455566655 6778999999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC-CeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ-TFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~-~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
|||+++ +|.+++..... ....+++..+..++.||++||+||| ++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 129 ~e~~~~-~L~~~l~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 203 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVID-KGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGY 203 (340)
T ss_dssp ECCCSE-EHHHHHHHHHH-TSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHH
T ss_pred HHHhhC-cHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCcee
Confidence 999975 99999876332 3467999999999999999999999 55 999999999999999999999999999986
Q ss_pred CCCCCcceecccccccCcccccccc----cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAV----MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
.... .......||+.|+|||++. ...++.++|||||||++|||++|+.||........ .+ ....
T Consensus 204 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~-~~----~~~~----- 271 (340)
T 3an0_A 204 LVDS--VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ-QL----KQVV----- 271 (340)
T ss_dssp HSCH--HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH-HH----HHHH-----
T ss_pred cccc--cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHH-HH----HHHh-----
Confidence 5432 2223357999999999964 34788999999999999999999999986432211 11 1111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
....+.+. .......+.+++.+|++.||++||++.||++ ++++...
T Consensus 272 --~~~~~~~~----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~--hp~f~~~ 317 (340)
T 3an0_A 272 --EEPSPQLP----ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ--HPFFTLH 317 (340)
T ss_dssp --HSCCCCCC----GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT--SHHHHHH
T ss_pred --cCCCCCCC----cccCCHHHHHHHHHHccCCcccCcCHHHHhc--CcCcccc
Confidence 00111111 0112245789999999999999999999998 6666543
No 206
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=3.5e-38 Score=341.16 Aligned_cols=254 Identities=27% Similarity=0.437 Sum_probs=198.2
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 68899999999999999999876 789999999864311 1122457889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++++|.+++... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 91 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~ 162 (276)
T 2h6d_A 91 EYVSGGELFDYICKH-----GRVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS 162 (276)
T ss_dssp ECCCSCBHHHHHHHH-----CSCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCC
T ss_pred eccCCCcHHHHHhcc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccC
Confidence 999999999999652 45899999999999999999999 7799999999999999999999999999998654
Q ss_pred CCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... ......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||........ ...+... .
T Consensus 163 ~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~~-------~ 227 (276)
T 2h6d_A 163 DGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTL------FKKIRGG-------V 227 (276)
T ss_dssp C---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHC-------C
T ss_pred CCc--ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH------HHHhhcC-------c
Confidence 432 2234578999999999987765 5899999999999999999999986543221 1111110 0
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+. . .....+.+++.+|++.||++||++.||++ ++++++
T Consensus 228 -~~~~-~----~~~~~l~~li~~~l~~~p~~Rps~~~~l~--h~~~~~ 267 (276)
T 2h6d_A 228 -FYIP-E----YLNRSVATLLMHMLQVDPLKRATIKDIRE--HEWFKQ 267 (276)
T ss_dssp -CCCC-T----TSCHHHHHHHHHHTCSSGGGSCCHHHHHH--SHHHHT
T ss_pred -ccCc-h----hcCHHHHHHHHHHccCChhhCCCHHHHHh--Chhhcc
Confidence 0010 0 11234779999999999999999999998 666654
No 207
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.4e-38 Score=345.20 Aligned_cols=259 Identities=27% Similarity=0.440 Sum_probs=198.2
Q ss_pred cCccccCcccccCccEEEEEEEC--CCC--EEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE--DGT--KIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~--~g~--~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
++|+..+.||+|+||.||+|++. +++ .||||+++.... .....+.+.+|++++++++||||+++++++.... .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 67899999999999999999753 333 689998865422 3345678999999999999999999999998765 88
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|.+++.... ..+++.++..++.|+++||+||| +++|+||||||+||+++.++.+||+|||+++
T Consensus 97 ~v~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~ 169 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQ----GHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMR 169 (291)
T ss_dssp EEEECCTTCBHHHHHHHHG----GGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred eeEecccCCCHHHHHHhcc----CCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccc
Confidence 9999999999999997532 45899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcc--eecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 780 LAPDGEKS--VVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 780 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
........ ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||......+. ...+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~------~~~~~~~~-- 241 (291)
T 1u46_A 170 ALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI------LHKIDKEG-- 241 (291)
T ss_dssp ECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH------HHHHHTSC--
T ss_pred cccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHH------HHHHHccC--
Confidence 66543322 1234567889999999998889999999999999999999 9999987653321 11111100
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.... ........+.+++.+|++.||++||++.++++.|+++..
T Consensus 242 ------~~~~---~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 242 ------ERLP---RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp ------CCCC---CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred ------CCCC---CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 0000 011123458899999999999999999999999988754
No 208
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2.6e-38 Score=370.67 Aligned_cols=261 Identities=23% Similarity=0.340 Sum_probs=211.0
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
..++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 103 (484)
T 3nyv_A 24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL 103 (484)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 3468999999999999999999876 789999999865422 23345678999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE---CCCCCEEEeeccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL---DDDYRAKVSDFGL 777 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill---~~~~~~kl~DfGl 777 (973)
||||+.+|+|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+|||+ +.++.+||+|||+
T Consensus 104 v~e~~~~~~L~~~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~ 175 (484)
T 3nyv_A 104 VGEVYTGGELFDEIIS-----RKRFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGL 175 (484)
T ss_dssp EECCCCSCBHHHHHHT-----CSCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTH
T ss_pred EEecCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeee
Confidence 9999999999998865 256899999999999999999999 7899999999999999 5678999999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
++...... ......||+.|+|||++.+ .++.++||||+||++|||++|+.||......+.. ..+....
T Consensus 176 a~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~------~~i~~~~--- 243 (484)
T 3nyv_A 176 STHFEASK--KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDIL------KKVEKGK--- 243 (484)
T ss_dssp HHHBCCCC--SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH------HHHHHCC---
T ss_pred eEEccccc--ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHH------HHHHcCC---
Confidence 98665433 2344579999999998865 7999999999999999999999999876543211 1111110
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
..... .........+.+++.+|++.||++|||+.|+++ +++++.+.
T Consensus 244 ---~~~~~---~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~--h~~~~~~~ 289 (484)
T 3nyv_A 244 ---YTFEL---PQWKKVSESAKDLIRKMLTYVPSMRISARDALD--HEWIQTYT 289 (484)
T ss_dssp ---CCCCS---GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT--SHHHHHHT
T ss_pred ---CCCCC---cccccCCHHHHHHHHHHCCCChhHCcCHHHHhh--Chhhcccc
Confidence 00000 000112245779999999999999999999998 77776543
No 209
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=9.2e-38 Score=351.99 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=209.0
Q ss_pred cHHHHHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCC---------ChHHHHHHHHHHHHHHhcCCCcee
Q 041143 616 SVQVLRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVT---------TTKALDEFQSEIAVLSKVRHRHLV 686 (973)
Q Consensus 616 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~---------~~~~~~~~~~E~~~l~~l~h~niv 686 (973)
...++....++|...+.||+|+||.||+|...+|+.||||++..... .....+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 45677888899999999999999999999988899999999854322 223357899999999999999999
Q ss_pred eeeeEEEeC-----CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCc
Q 041143 687 SLLGYSIEG-----NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSN 761 (973)
Q Consensus 687 ~l~~~~~~~-----~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~N 761 (973)
++++++... ...++||||++ |+|.+++.. ....+++..+..++.||+.||+||| +.+|+||||||+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~N 164 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD----QRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGN 164 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHC----TTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGG
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHh----cccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHH
Confidence 999998643 35799999997 688888864 2246899999999999999999999 7899999999999
Q ss_pred EEECCCCCEEEeeccccccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhH
Q 041143 762 ILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEES 840 (973)
Q Consensus 762 ill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~ 840 (973)
|+++.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+.
T Consensus 165 Il~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~ 242 (362)
T 3pg1_A 165 ILLADNNDITICDFNLAREDTADA--NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQ 242 (362)
T ss_dssp EEECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred EEEcCCCCEEEEecCccccccccc--ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence 999999999999999998543322 2344679999999999876 6789999999999999999999999987654332
Q ss_pred HHHHHHHHHHhh---------chhHHHhhcCcccc-CCccc-----HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHH
Q 041143 841 RYLAEWFWRIKS---------SKEKFKAAIDPALE-VNEET-----FESISIVAELAGHCTAREPYHRPDMGHVVNVLSP 905 (973)
Q Consensus 841 ~~~~~~~~~~~~---------~~~~~~~~~~~~l~-~~~~~-----~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~ 905 (973)
.. ........ ........+...+. ..... ......+.+++.+|++.||++|||+.|+++ ++
T Consensus 243 ~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp 318 (362)
T 3pg1_A 243 LN--KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR--HP 318 (362)
T ss_dssp HH--HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT--SG
T ss_pred HH--HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc--Cc
Confidence 11 11110000 00111111111111 00000 111245789999999999999999999998 77
Q ss_pred hhhhcCC
Q 041143 906 LVEKWRP 912 (973)
Q Consensus 906 ~~~~~~~ 912 (973)
+++.+..
T Consensus 319 ~f~~~~~ 325 (362)
T 3pg1_A 319 YFESLFD 325 (362)
T ss_dssp GGTTTCC
T ss_pred hhhhccC
Confidence 7776543
No 210
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-37 Score=353.83 Aligned_cols=272 Identities=21% Similarity=0.309 Sum_probs=202.8
Q ss_pred HHHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC----
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG---- 695 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~---- 695 (973)
+...++|...+.||+|+||.||+|.. .+|+.||||++..... ...+|+++++.++|||||++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~------~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 76 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR------YKNRELDIMKVLDHVNIIKLVDYFYTTGDEE 76 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT------SCCHHHHHHTTCCCTTBCCEEEEEEEC----
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc------hHHHHHHHHHHcCCCCccchhheeeecCccc
Confidence 34567899999999999999999976 5789999999875422 234799999999999999999998543
Q ss_pred ----------------------------------CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHH
Q 041143 696 ----------------------------------NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGM 741 (973)
Q Consensus 696 ----------------------------------~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl 741 (973)
...++||||++ |+|.+.+...... ...+++..+..++.||++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~l~~~~~~~i~~qi~~aL 154 (383)
T 3eb0_A 77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS-GRSIPMNLISIYIYQLFRAV 154 (383)
T ss_dssp ---------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHH
Confidence 23789999997 6998888764332 36799999999999999999
Q ss_pred HHHHhhccCCeeeccCCCCcEEEC-CCCCEEEeeccccccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHH
Q 041143 742 EYLHCLARQTFIHRDLKSSNILLD-DDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYG 819 (973)
Q Consensus 742 ~~LH~~~~~~ivH~Dikp~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~G 819 (973)
+||| +.+|+||||||+||+++ .++.+||+|||+++...... ......||+.|+|||++.+. .++.++||||+|
T Consensus 155 ~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG 229 (383)
T 3eb0_A 155 GFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE--PSVAYICSRFYRAPELMLGATEYTPSIDLWSIG 229 (383)
T ss_dssp HHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS--CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred HHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC--CCcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence 9999 88999999999999998 68999999999998654432 23345789999999998764 589999999999
Q ss_pred HHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch-hHHHh-------hcCccccCCc----ccHHHHHHHHHHHHHhhc
Q 041143 820 VVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK-EKFKA-------AIDPALEVNE----ETFESISIVAELAGHCTA 887 (973)
Q Consensus 820 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~l~~~~----~~~~~~~~~~~l~~~cl~ 887 (973)
|++|||++|+.||......+. +...+....... +.+.. ..-+.+.... ........+.+++.+|++
T Consensus 230 ~il~ell~g~~pf~~~~~~~~--~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~ 307 (383)
T 3eb0_A 230 CVFGELILGKPLFSGETSIDQ--LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILR 307 (383)
T ss_dssp HHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCCChHHH--HHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHcc
Confidence 999999999999987654332 222111111100 00000 0001110000 000122457899999999
Q ss_pred cCCCCCCCHhHHHHHHHHhhhh
Q 041143 888 REPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 888 ~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.||++|||+.|+++ +++++.
T Consensus 308 ~dP~~R~t~~e~l~--hp~f~~ 327 (383)
T 3eb0_A 308 YEPDLRINPYEAMA--HPFFDH 327 (383)
T ss_dssp SSGGGSCCHHHHHT--SGGGHH
T ss_pred CChhhCCCHHHHhc--CHHHHH
Confidence 99999999999997 666554
No 211
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.7e-37 Score=356.71 Aligned_cols=268 Identities=22% Similarity=0.299 Sum_probs=207.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc------CCCceeeeeeEEEeCC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV------RHRHLVSLLGYSIEGN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~ 696 (973)
..+|+..+.||+|+||.||+|... +++.||||+++.. ....+.+.+|+++++.+ +|+||+++++++...+
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~---~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 172 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE---KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRN 172 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC---HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETT
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc---cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCC
Confidence 467999999999999999999775 5889999999653 44556788899998887 5779999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC--EEEee
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR--AKVSD 774 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~--~kl~D 774 (973)
..++||||+. |+|.+++.... ...+++..+..++.||+.||+||| +++|+||||||+|||++.++. +||+|
T Consensus 173 ~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~D 245 (429)
T 3kvw_A 173 HICMTFELLS-MNLYELIKKNK---FQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVID 245 (429)
T ss_dssp EEEEEECCCC-CBHHHHHHHTT---TCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECC
T ss_pred eEEEEEeccC-CCHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEee
Confidence 9999999995 79999987632 245899999999999999999999 779999999999999999987 99999
Q ss_pred ccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +...+.......
T Consensus 246 FG~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~--l~~i~~~~~~p~ 319 (429)
T 3kvw_A 246 FGSSCYEHQR----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQ--LACMIELLGMPS 319 (429)
T ss_dssp CTTCEETTCC----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCC
T ss_pred cccceecCCc----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHcCCCC
Confidence 9999765432 2345799999999999999999999999999999999999999987764332 222111111000
Q ss_pred h-------HHHhhcCccc---------------------------c--CCcccHH------HHHHHHHHHHHhhccCCCC
Q 041143 855 E-------KFKAAIDPAL---------------------------E--VNEETFE------SISIVAELAGHCTAREPYH 892 (973)
Q Consensus 855 ~-------~~~~~~~~~l---------------------------~--~~~~~~~------~~~~~~~l~~~cl~~dP~~ 892 (973)
. .....++..- . ....... ....+.+++.+||+.||++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~ 399 (429)
T 3kvw_A 320 QKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAV 399 (429)
T ss_dssp HHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTT
T ss_pred HHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhh
Confidence 0 1111111100 0 0000000 0245789999999999999
Q ss_pred CCCHhHHHHHHHHhhhh
Q 041143 893 RPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 893 RPs~~~v~~~L~~~~~~ 909 (973)
|||+.|+++ ++++++
T Consensus 400 Rpta~e~L~--Hpw~~~ 414 (429)
T 3kvw_A 400 RMTPGQALR--HPWLRR 414 (429)
T ss_dssp SCCHHHHHT--STTTC-
T ss_pred CCCHHHHhC--Chhhcc
Confidence 999999998 666654
No 212
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.2e-38 Score=350.74 Aligned_cols=275 Identities=23% Similarity=0.295 Sum_probs=201.5
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCCh---HHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTT---KALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
...++|...+.||+|+||.||+|+.. +|+.||||+++...... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999875 58999999986532211 123468899999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++ +|..++.. ....+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 87 ~~lv~e~~~~-~l~~~~~~----~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKD----NSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGL 158 (346)
T ss_dssp CEEEEECCSE-EHHHHHTT----CCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGG
T ss_pred eEEEEEcCCC-CHHHHHHh----cCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEeccc
Confidence 9999999975 88888754 2246889999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc-hh
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS-KE 855 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~-~~ 855 (973)
++...... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||......+. +...+...... ..
T Consensus 159 a~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~--~~~i~~~~~~~~~~ 235 (346)
T 1ua2_A 159 AKSFGSPN-RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQ--LTRIFETLGTPTEE 235 (346)
T ss_dssp GSTTTSCC-CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCTT
T ss_pred ceeccCCc-ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHH--HHHHHHHcCCCChh
Confidence 98654332 223456799999999998754 588999999999999999999999987654322 11111111000 00
Q ss_pred HHHhhcC--ccccC---Cccc-----HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 856 KFKAAID--PALEV---NEET-----FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 856 ~~~~~~~--~~l~~---~~~~-----~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
....... ..... .... ......+.+++.+|++.||++|||+.|+++ ++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--h~~f~~ 297 (346)
T 1ua2_A 236 QWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK--MKYFSN 297 (346)
T ss_dssp TSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT--SGGGTS
T ss_pred hhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc--Chhhhc
Confidence 0000000 00000 0000 111246889999999999999999999998 666654
No 213
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=3.6e-38 Score=381.10 Aligned_cols=251 Identities=24% Similarity=0.326 Sum_probs=204.9
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCC-CChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGV-TTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~-~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 699 (973)
..++|...+.||+|+||.||+|+.. +++.||||+++... ......+.+..|.+++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999875 58899999987431 1122345678899999987 7999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+||||+++|+|..++... ..+++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+
T Consensus 419 lV~E~~~gg~L~~~l~~~-----~~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~ 490 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQV-----GRFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCK 490 (674)
T ss_dssp EEEECCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCE
T ss_pred EEEeCcCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceee
Confidence 999999999999999752 45899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHh
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKA 859 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 (973)
...... ......+||+.|+|||++.+..|+.++|||||||++|||++|+.||......+. +..+.
T Consensus 491 ~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~------~~~i~-------- 555 (674)
T 3pfq_A 491 ENIWDG-VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDEL------FQSIM-------- 555 (674)
T ss_dssp ECCCTT-CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHH--------
T ss_pred ccccCC-cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHH------HHHHH--------
Confidence 543322 234557899999999999999999999999999999999999999987654221 11222
Q ss_pred hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCH-----hHHHH
Q 041143 860 AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDM-----GHVVN 901 (973)
Q Consensus 860 ~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~-----~~v~~ 901 (973)
...+.... .....+.+|+.+||+.||++||++ .||.+
T Consensus 556 --~~~~~~p~---~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 556 --EHNVAYPK---SMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp --SSCCCCCT---TSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred --hCCCCCCc---cCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence 11111111 122457899999999999999998 56655
No 214
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=2.7e-37 Score=344.78 Aligned_cols=267 Identities=22% Similarity=0.321 Sum_probs=209.3
Q ss_pred hcCccccCcccccCccEEEEEEE--CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCC------ceeeeeeEEEeC
Q 041143 624 TQNFAQENELGRGGFGTVYKGEL--EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHR------HLVSLLGYSIEG 695 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~--~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~ 695 (973)
.++|...+.||+|+||.||+|.. .+|+.||||+++. .....+.+.+|+++++.++|+ +++++++++...
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~ 89 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKN---VDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH 89 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS---SHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEec---CCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC
Confidence 36899999999999999999986 3688999999864 345567889999999998765 499999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---------
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD--------- 766 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~--------- 766 (973)
+..++||||+ +++|.+++... ....+++.++..++.||+.||+||| +++|+||||||+||+++.
T Consensus 90 ~~~~lv~e~~-~~~l~~~l~~~---~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~ 162 (339)
T 1z57_A 90 GHICIVFELL-GLSTYDFIKEN---GFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNP 162 (339)
T ss_dssp TEEEEEEECC-CCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC-
T ss_pred CcEEEEEcCC-CCCHHHHHHhc---CCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCC
Confidence 9999999999 99999999652 2246899999999999999999999 789999999999999987
Q ss_pred ----------CCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCC
Q 041143 767 ----------DYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEER 836 (973)
Q Consensus 767 ----------~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~ 836 (973)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 163 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 238 (339)
T 1z57_A 163 KIKRDERTLINPDIKVVDFGSATYDDEH----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD 238 (339)
T ss_dssp ---CEEEEESCCCEEECCCSSCEETTSC----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC
T ss_pred ccccccccccCCCceEeeCcccccCccc----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence 678999999999865432 234579999999999999999999999999999999999999998766
Q ss_pred hhhHHHHHHHHHHHhhc-hh---------------------------HHHhhcCccccCCcccHHHHHHHHHHHHHhhcc
Q 041143 837 PEESRYLAEWFWRIKSS-KE---------------------------KFKAAIDPALEVNEETFESISIVAELAGHCTAR 888 (973)
Q Consensus 837 ~~~~~~~~~~~~~~~~~-~~---------------------------~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~ 888 (973)
..+...... ..... .. .......+..............+.+++.+|++.
T Consensus 239 ~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~ 315 (339)
T 1z57_A 239 SKEHLAMME---RILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEY 315 (339)
T ss_dssp HHHHHHHHH---HHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHH---HHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCc
Confidence 443222111 11100 00 000111111111112223456788999999999
Q ss_pred CCCCCCCHhHHHHHHHHhhhh
Q 041143 889 EPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 889 dP~~RPs~~~v~~~L~~~~~~ 909 (973)
||++|||+.||++ +++++.
T Consensus 316 dP~~Rpt~~ell~--hp~f~~ 334 (339)
T 1z57_A 316 DPAKRITLREALK--HPFFDL 334 (339)
T ss_dssp STTTSCCHHHHTT--SGGGGG
T ss_pred CcccccCHHHHhc--CHHHHH
Confidence 9999999999997 555543
No 215
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=7.2e-38 Score=345.31 Aligned_cols=258 Identities=25% Similarity=0.363 Sum_probs=202.7
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC--CCceeeeeeEEEeCCeEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR--HRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lV 701 (973)
.++|...+.||+|+||.||+|...+++.||||++..........+.+.+|++++.+++ |+||+++++++...+..++|
T Consensus 27 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 106 (313)
T 3cek_A 27 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 106 (313)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEE
T ss_pred cceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEE
Confidence 4679999999999999999999988999999999876556677788999999999997 59999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|| +.+++|.+++.. ...+++.++..++.||++||+||| +.+|+||||||+||++++ +.+||+|||+++..
T Consensus 107 ~e-~~~~~L~~~l~~-----~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 107 ME-CGNIDLNSWLKK-----KKSIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EC-CCSEEHHHHHHH-----CSSCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred Ee-cCCCcHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 99 568999999965 246899999999999999999999 789999999999999965 89999999999865
Q ss_pred CCCCc-ceecccccccCccccccccc-----------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHH
Q 041143 782 PDGEK-SVVTRLAGTFGYLAPEYAVM-----------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWR 849 (973)
Q Consensus 782 ~~~~~-~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 849 (973)
..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~--------- 247 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS--------- 247 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH---------
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH---------
Confidence 43322 12234579999999999865 4688899999999999999999999976543211
Q ss_pred HhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 850 IKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.+...+++..... ........+.+++.+|++.||++||++.|+++ +.+++.
T Consensus 248 ------~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~--h~~~~~ 298 (313)
T 3cek_A 248 ------KLHAIIDPNHEIE-FPDIPEKDLQDVLKCCLKRDPKQRISIPELLA--HPYVQI 298 (313)
T ss_dssp ------HHHHHHCTTSCCC-CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHHC
T ss_pred ------HHHHHHhcccccC-CcccchHHHHHHHHHHccCCcccCcCHHHHhc--CccccC
Confidence 1111122111100 00011245789999999999999999999998 666654
No 216
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=5.7e-38 Score=341.01 Aligned_cols=253 Identities=25% Similarity=0.408 Sum_probs=206.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +++.||||++..... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 67899999999999999999876 578899999864311 1112357889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 94 e~~~~~~L~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~ 165 (284)
T 2vgo_A 94 EFAPRGELYKELQKH-----GRFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAP 165 (284)
T ss_dssp CCCTTEEHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECS
T ss_pred EeCCCCcHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCc
Confidence 999999999999652 45899999999999999999999 8899999999999999999999999999987554
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
... .....|++.|+|||++.+..++.++||||||+++|||++|+.||......+.. ..+.. .+
T Consensus 166 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~------~~~~~--------~~ 228 (284)
T 2vgo_A 166 SLR---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETH------RRIVN--------VD 228 (284)
T ss_dssp SSC---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHH------HHHHT--------TC
T ss_pred ccc---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHH------HHHhc--------cc
Confidence 322 23457999999999999999999999999999999999999999866532211 11111 01
Q ss_pred ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 863 PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 863 ~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+. . .....+.+++.+|++.||.+||++.|+++ +++++.
T Consensus 229 ~~~~--~---~~~~~~~~li~~~l~~~p~~Rps~~~ll~--h~~~~~ 268 (284)
T 2vgo_A 229 LKFP--P---FLSDGSKDLISKLLRYHPPQRLPLKGVME--HPWVKA 268 (284)
T ss_dssp CCCC--T---TSCHHHHHHHHHHSCSSGGGSCCHHHHHT--CHHHHH
T ss_pred cCCC--C---cCCHHHHHHHHHHhhcCHhhCCCHHHHhh--CHHHHh
Confidence 1111 1 11234779999999999999999999998 566553
No 217
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=6.6e-38 Score=377.58 Aligned_cols=260 Identities=23% Similarity=0.390 Sum_probs=207.3
Q ss_pred HhcCccccCcccccCccEEEEEEECC----CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELED----GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNER 698 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 698 (973)
..++|...+.||+|+||.||+|.+.. +..||||+++.. ......+.+.+|+.++++++||||+++++++. ++..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC-TSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST-TCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 34678899999999999999998742 457999998654 34555678999999999999999999999985 4568
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccc
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLV 778 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla 778 (973)
++||||+++|+|.+++... ...+++..++.++.||++||+||| +++|+||||||+|||++.++.+||+|||++
T Consensus 466 ~lv~E~~~~g~L~~~l~~~----~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a 538 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVR----KFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLS 538 (656)
T ss_dssp EEEEECCTTCBHHHHHHHT----TTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCC
T ss_pred EEEEEcCCCCcHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCC
Confidence 9999999999999999652 245899999999999999999999 789999999999999999999999999999
Q ss_pred ccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 779 KLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 779 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
+..............||+.|+|||++.+..++.++|||||||++|||++ |+.||......+. .. .+..
T Consensus 539 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~---~~---~i~~----- 607 (656)
T 2j0j_A 539 RYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV---IG---RIEN----- 607 (656)
T ss_dssp CSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH---HH---HHHH-----
T ss_pred eecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHH---HH---HHHc-----
Confidence 8765544333344567889999999998999999999999999999997 9999987654321 11 1111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.....+. ......+.+++.+|++.||++||++.||++.|+.+.+.
T Consensus 608 --~~~~~~~-----~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 608 --GERLPMP-----PNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp --TCCCCCC-----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCC-----ccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 0011111 11224578999999999999999999999999998764
No 218
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=345.29 Aligned_cols=273 Identities=21% Similarity=0.317 Sum_probs=200.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEE---------
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSI--------- 693 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--------- 693 (973)
.++|...+.||+|+||.||+|... +|+.||||++... .....+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 87 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT--DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDD 87 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC-
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC--ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccc
Confidence 368899999999999999999876 4899999998754 5566788999999999999999999999874
Q ss_pred -----eCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC-CC
Q 041143 694 -----EGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD-DD 767 (973)
Q Consensus 694 -----~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~-~~ 767 (973)
+....++||||++ |+|.+++.. ..+++..+..++.||+.||+||| +++|+||||||+||+++ ++
T Consensus 88 ~~~~~~~~~~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~ 157 (320)
T 2i6l_A 88 VGSLTELNSVYIVQEYME-TDLANVLEQ------GPLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTED 157 (320)
T ss_dssp ---CCSCSEEEEEEECCS-EEHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTT
T ss_pred cccccccCceeEEeeccC-CCHHHHhhc------CCccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCC
Confidence 3467899999997 699998853 46899999999999999999999 78999999999999997 56
Q ss_pred CCEEEeeccccccCCCCC--cceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHH
Q 041143 768 YRAKVSDFGLVKLAPDGE--KSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLA 844 (973)
Q Consensus 768 ~~~kl~DfGla~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~ 844 (973)
+.+||+|||+++...... ........||..|+|||.+.. ..++.++|||||||++|||++|+.||......+...
T Consensus 158 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-- 235 (320)
T 2i6l_A 158 LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQ-- 235 (320)
T ss_dssp TEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--
T ss_pred CeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHH--
Confidence 799999999998654321 112234567999999998865 678999999999999999999999998766432211
Q ss_pred HHHHHHhhc-hhHHHh---h--------c-CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 845 EWFWRIKSS-KEKFKA---A--------I-DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 845 ~~~~~~~~~-~~~~~~---~--------~-~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
......... .....+ . . .+..............+.+++.+|++.||++||++.|+++ +++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~~~~~~ 313 (320)
T 2i6l_A 236 LILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS--HPYMSIYS 313 (320)
T ss_dssp HHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT--SHHHHTTC
T ss_pred HHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC--Cccccccc
Confidence 111000000 000000 0 0 0000000000112345889999999999999999999998 77776544
Q ss_pred C
Q 041143 912 P 912 (973)
Q Consensus 912 ~ 912 (973)
.
T Consensus 314 ~ 314 (320)
T 2i6l_A 314 F 314 (320)
T ss_dssp C
T ss_pred C
Confidence 3
No 219
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=350.10 Aligned_cols=274 Identities=20% Similarity=0.332 Sum_probs=207.7
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe------
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE------ 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 697 (973)
++|...+.||+|+||.||+|... +|+.||||++..........+.+.+|+.++++++||||+++++++.....
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 67889999999999999999875 68999999997765566667889999999999999999999999987654
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+. |+|.+++. ..+++.++..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 104 ~~lv~e~~~-~~l~~~~~-------~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 172 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMG-------LKFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGL 172 (353)
T ss_dssp CEEEEECCS-EEGGGTTT-------SCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTC
T ss_pred EEEEecccc-CCHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeeccc
Confidence 499999996 68876652 34899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||......+.. .............
T Consensus 173 ~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~--~~i~~~~~~~~~~ 246 (353)
T 3coi_A 173 ARHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQL--TQILKVTGVPGTE 246 (353)
T ss_dssp TTC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHH--HHHHHHHCBCCHH
T ss_pred ccCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHhCCCCHH
Confidence 9854332 234578999999999876 67899999999999999999999999876543221 1111100000000
Q ss_pred H------------HhhcCcc--ccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCCCCCC
Q 041143 857 F------------KAAIDPA--LEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPITDES 917 (973)
Q Consensus 857 ~------------~~~~~~~--l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~~~~~ 917 (973)
. ...+... .............+.+++.+|++.||++||++.|+++ +++++.+.....+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~--hp~f~~~~~~~~~~ 319 (353)
T 3coi_A 247 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT--HPFFEPFRDPEEET 319 (353)
T ss_dssp HHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT--SGGGTTTCCGGGCC
T ss_pred HHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc--CcchhhccCccccc
Confidence 0 0000000 0000111122356889999999999999999999998 77777655444433
No 220
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2e-37 Score=352.31 Aligned_cols=271 Identities=23% Similarity=0.347 Sum_probs=201.8
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe------E
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE------R 698 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~ 698 (973)
.+|...+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++|||||++++++...+. .
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~------~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR------FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT------SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc------hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 57889999999999999999998777899998865421 22479999999999999999999975433 7
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC-CCCCEEEeeccc
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD-DDYRAKVSDFGL 777 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~-~~~~~kl~DfGl 777 (973)
++||||++++ +...+..... ....+++..+..++.||++||+||| +.+|+||||||+|||++ .++.+||+|||+
T Consensus 114 ~lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~ 188 (394)
T 4e7w_A 114 NLVLEYVPET-VYRASRHYAK-LKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGS 188 (394)
T ss_dssp EEEEECCSEE-HHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred EEEeeccCcc-HHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCC
Confidence 8999999764 4444433222 2357899999999999999999999 78999999999999999 799999999999
Q ss_pred cccCCCCCcceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
++....... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+....+. +...+.........
T Consensus 189 a~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~--l~~i~~~~g~p~~~ 264 (394)
T 4e7w_A 189 AKILIAGEP--NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ--LVEIIKVLGTPSRE 264 (394)
T ss_dssp CEECCTTCC--CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHHHHCCCCHH
T ss_pred cccccCCCC--CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHHHhCCCCHH
Confidence 986544332 3346789999999998764 589999999999999999999999987664332 22211111100000
Q ss_pred HHhhcCccc-----cC-CcccH------HHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 857 FKAAIDPAL-----EV-NEETF------ESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 857 ~~~~~~~~l-----~~-~~~~~------~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
.....++.. .. ..... .....+.+++.+||+.||++||++.|+++ +++++....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~--hp~f~~~~~ 330 (394)
T 4e7w_A 265 QIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC--HPFFDELRT 330 (394)
T ss_dssp HHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT--SGGGSTTTS
T ss_pred HHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc--Chhhhhhcc
Confidence 000011110 00 00000 12246889999999999999999999998 777765443
No 221
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=339.05 Aligned_cols=257 Identities=23% Similarity=0.347 Sum_probs=200.5
Q ss_pred CccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEEe
Q 041143 626 NFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEY 704 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e~ 704 (973)
+|....+||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 100 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER--DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQ 100 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC--CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC--chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEe
Confidence 455566899999999999986 46889999998764 334457799999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC-CCCEEEeeccccccCCC
Q 041143 705 MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD-DYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 705 ~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~-~~~~kl~DfGla~~~~~ 783 (973)
+++|+|.+++.... ....+++..+..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||+++....
T Consensus 101 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~ 175 (295)
T 2clq_A 101 VPGGSLSALLRSKW--GPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 175 (295)
T ss_dssp CSEEEHHHHHHHTT--CCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred CCCCCHHHHHHhhc--cCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence 99999999997622 2245678899999999999999999 789999999999999987 89999999999986543
Q ss_pred CCcceecccccccCcccccccccCc--CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhc
Q 041143 784 GEKSVVTRLAGTFGYLAPEYAVMGK--ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAI 861 (973)
Q Consensus 784 ~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (973)
... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||.......... ... .....
T Consensus 176 ~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~----~~~-------~~~~~ 243 (295)
T 2clq_A 176 INP-CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM----FKV-------GMFKV 243 (295)
T ss_dssp ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH----HHH-------HHHCC
T ss_pred CCC-cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH----Hhh-------ccccc
Confidence 221 233457999999999987643 8899999999999999999999997543221110 000 00011
Q ss_pred CccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 862 DPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 862 ~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.+.+. ......+.+++.+|++.||++||++.|+++ +++++
T Consensus 244 ~~~~~-----~~~~~~~~~li~~~l~~dp~~Rps~~~ll~--~~~~~ 283 (295)
T 2clq_A 244 HPEIP-----ESMSAEAKAFILKCFEPDPDKRACANDLLV--DEFLK 283 (295)
T ss_dssp CCCCC-----TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT--SGGGC
T ss_pred ccccc-----ccCCHHHHHHHHHHccCChhhCCCHHHHhc--Chhhh
Confidence 12211 112245779999999999999999999987 55544
No 222
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=354.42 Aligned_cols=261 Identities=22% Similarity=0.387 Sum_probs=202.0
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.++|...+.||+|+||.||+|+... .||+|+++.........+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4688999999999999999998864 49999987654344444568889999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCC
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPD 783 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~ 783 (973)
|+++++|.+++.. ....+++.++..++.||+.||+||| +++|+||||||+||+++ ++.+||+|||+++....
T Consensus 110 ~~~~~~L~~~l~~----~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~ 181 (319)
T 2y4i_B 110 LCKGRTLYSVVRD----AKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGV 181 (319)
T ss_dssp CCCSEEHHHHTTS----SCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC----
T ss_pred cccCCcHHHHHHh----cCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCcccccc
Confidence 9999999999854 2246899999999999999999999 78999999999999998 67999999999875432
Q ss_pred C----CcceecccccccCccccccccc---------CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHH
Q 041143 784 G----EKSVVTRLAGTFGYLAPEYAVM---------GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRI 850 (973)
Q Consensus 784 ~----~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 850 (973)
. .........||+.|+|||++.. ..++.++|||||||++|||++|+.||......... ..+
T Consensus 182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------~~~ 255 (319)
T 2y4i_B 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAII------WQM 255 (319)
T ss_dssp ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHH------HHH
T ss_pred ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH------HHh
Confidence 1 1122234569999999999864 45788999999999999999999999876543211 111
Q ss_pred hhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 851 KSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
. ....+...... ....+.+++.+|++.||++||++.+|++.|+.+.++..
T Consensus 256 ~-------~~~~~~~~~~~----~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~ 305 (319)
T 2y4i_B 256 G-------TGMKPNLSQIG----MGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR 305 (319)
T ss_dssp H-------TTCCCCCCCSS----CCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred c-------cCCCCCCCcCC----CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1 11112111000 11237799999999999999999999999999877643
No 223
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.3e-37 Score=338.70 Aligned_cols=263 Identities=25% Similarity=0.359 Sum_probs=210.1
Q ss_pred HHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEE
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERL 699 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 699 (973)
....++|...+.||+|+||.||+|+.. +++.||||++..........+.+.+|++++++++||||+++++++.+.+..+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 455679999999999999999999876 6899999998765444445678899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC---CCEEEeecc
Q 041143 700 LVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD---YRAKVSDFG 776 (973)
Q Consensus 700 lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~---~~~kl~DfG 776 (973)
+||||+++++|.+++... ..+++.++..++.||+.||+||| +.+|+||||||+||+++.+ +.+||+|||
T Consensus 98 lv~e~~~~~~L~~~l~~~-----~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg 169 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKR-----KRFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFG 169 (287)
T ss_dssp EEECCCCSCBHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTT
T ss_pred EEEEccCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccC
Confidence 999999999999988652 45899999999999999999999 7899999999999999764 479999999
Q ss_pred ccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 777 LVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 777 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
+++....... .....||+.|+|||.+.+ .++.++||||||+++|||++|+.||......+. ...+....
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~------~~~~~~~~-- 238 (287)
T 2wei_A 170 LSTCFQQNTK--MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDI------LKRVETGK-- 238 (287)
T ss_dssp GGGTBCCCSS--CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH------HHHHHHCC--
T ss_pred cceeecCCCc--cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHH------HHHHHcCC--
Confidence 9986544322 233468999999998765 589999999999999999999999987653321 11111100
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...... ........+.+++.+|++.||++||++.|+++ .++++++.
T Consensus 239 ----~~~~~~---~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~--hp~~~~~~ 284 (287)
T 2wei_A 239 ----YAFDLP---QWRTISDDAKDLIRKMLTFHPSLRITATQCLE--HPWIQKYS 284 (287)
T ss_dssp ----CCCCSG---GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH--SHHHHHHC
T ss_pred ----CCCCch---hhhhcCHHHHHHHHHHcccChhhCcCHHHHhc--CHHHhccc
Confidence 000000 00111245789999999999999999999998 66666543
No 224
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=340.16 Aligned_cols=262 Identities=22% Similarity=0.301 Sum_probs=203.2
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC--ChHHHHHHHHHHHHHHhcCCCceeeeeeEEE--eCCe
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT--TTKALDEFQSEIAVLSKVRHRHLVSLLGYSI--EGNE 697 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~ 697 (973)
..++|...+.||+|+||.||+|... +++.||||+++.... .....+.+.+|++++++++||||+++++++. +...
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 3578999999999999999999874 688999999864311 1234567999999999999999999999985 4457
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+++| |.+++... ....+++..+..++.||++||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~ 155 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSV---PEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGV 155 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHS---TTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEehhccCC-HHHHHHhC---cccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccc
Confidence 89999999876 77777542 2356899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCC-CcceecccccccCcccccccccCc--CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 778 VKLAPDG-EKSVVTRLAGTFGYLAPEYAVMGK--ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 778 a~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
++..... .........||+.|+|||++.+.. ++.++|||||||++|||++|+.||......+. ...+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~i~~~~ 229 (305)
T 2wtk_C 156 AEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKL------FENIGKGS 229 (305)
T ss_dssp CEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH------HHHHHHCC
T ss_pred ccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHH------HHHHhcCC
Confidence 9865432 222334567999999999987643 47799999999999999999999987543221 11111100
Q ss_pred hHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCC
Q 041143 855 EKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRP 912 (973)
Q Consensus 855 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~ 912 (973)
..+. . .....+.+++.+|++.||++||++.|+++ +++++...+
T Consensus 230 --------~~~~--~---~~~~~l~~li~~~l~~dp~~Rps~~~ll~--~~~~~~~~~ 272 (305)
T 2wtk_C 230 --------YAIP--G---DCGPPLSDLLKGMLEYEPAKRFSIRQIRQ--HSWFRKKHP 272 (305)
T ss_dssp --------CCCC--S---SSCHHHHHHHHHHTCSSTTTSCCHHHHHH--SHHHHSCCC
T ss_pred --------CCCC--C---ccCHHHHHHHHHHccCChhhCCCHHHHhc--CcccccCCC
Confidence 0111 0 11234779999999999999999999998 677665443
No 225
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.3e-37 Score=344.72 Aligned_cols=259 Identities=25% Similarity=0.356 Sum_probs=198.8
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC------ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT------TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
...++|...+.||+|+||.||+|... +++.||||++..... .......+.+|++++++++||||+++++++..
T Consensus 7 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~ 86 (322)
T 2ycf_A 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 86 (322)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES
T ss_pred hhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC
Confidence 34578999999999999999999875 578999999865321 11223458899999999999999999999876
Q ss_pred CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC---EE
Q 041143 695 GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR---AK 771 (973)
Q Consensus 695 ~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~---~k 771 (973)
.+ .++||||+++|+|.+++.. ...+++..+..++.||+.||+||| +++|+||||||+||+++.++. +|
T Consensus 87 ~~-~~lv~e~~~~~~L~~~~~~-----~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~k 157 (322)
T 2ycf_A 87 ED-YYIVLELMEGGELFDKVVG-----NKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIK 157 (322)
T ss_dssp SS-EEEEEECCTTEETHHHHST-----TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEE
T ss_pred Cc-eEEEEecCCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEE
Confidence 54 8999999999999998854 256899999999999999999999 789999999999999987654 99
Q ss_pred EeeccccccCCCCCcceecccccccCcccccccc---cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 772 VSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV---MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 772 l~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
|+|||+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||........ +...+.
T Consensus 158 l~Dfg~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~ 233 (322)
T 2ycf_A 158 ITDFGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS--LKDQIT 233 (322)
T ss_dssp ECCCTTCEECCCC--HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC--HHHHHH
T ss_pred EccCccceecccc--cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH--HHHHHH
Confidence 9999999866432 2233457999999999874 56789999999999999999999999976543211 111111
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLV 907 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~ 907 (973)
..... ..+.. .......+.+++.+|++.||++||++.|+++ ++++
T Consensus 234 ---~~~~~----~~~~~-----~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~--h~~~ 278 (322)
T 2ycf_A 234 ---SGKYN----FIPEV-----WAEVSEKALDLVKKLLVVDPKARFTTEEALR--HPWL 278 (322)
T ss_dssp ---HTCCC----CCHHH-----HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT--SGGG
T ss_pred ---hCccc----cCchh-----hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh--CcCc
Confidence 00000 00000 0011245789999999999999999999987 4443
No 226
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.1e-38 Score=347.79 Aligned_cols=269 Identities=23% Similarity=0.382 Sum_probs=189.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +++.||||++.... .....+++.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEK-CQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhh-cchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 478999999999999999999764 68999999886542 2334567889999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhc---cCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 703 EYMPHGALSRHLFRWEKL---QLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~---~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
||+++|+|.+++...... ....+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 999999999999753221 2345899999999999999999999 7899999999999999999999999999998
Q ss_pred cCCCCCc----ceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 780 LAPDGEK----SVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 780 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......... .......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-----~~~~~~~ 244 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM-----LTLQNDP 244 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHH-----HHHTSSC
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHH-----HHhccCC
Confidence 5543221 12234579999999999875 568999999999999999999999998765433211 0001000
Q ss_pred hHHHh-hcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 855 EKFKA-AIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 855 ~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..... ..++... ......+.+++.+|++.||.+||++.|+++ +++++
T Consensus 245 ~~~~~~~~~~~~~-----~~~~~~~~~li~~~l~~dp~~Rps~~~ll~--h~~~~ 292 (303)
T 2vwi_A 245 PSLETGVQDKEML-----KKYGKSFRKMISLCLQKDPEKRPTAAELLR--HKFFQ 292 (303)
T ss_dssp CCTTC-----CCC-----CCCCHHHHHHHHHHCCSSGGGSCCHHHHHT--STTC-
T ss_pred Cccccccccchhh-----hhhhHHHHHHHHHHccCChhhCcCHHHHhh--Chhhh
Confidence 00000 0001100 011235789999999999999999999998 45544
No 227
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=340.04 Aligned_cols=258 Identities=25% Similarity=0.405 Sum_probs=204.2
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEE
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 700 (973)
...++|...+.||+|+||.||+|... +|+.||||++.... ..+.+.+|++++++++||||+++++++...+..++
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES----DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS----CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH----HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 44578999999999999999999876 58999999997542 23568899999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
||||+++|+|.+++... ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 102 v~e~~~~~~L~~~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~ 174 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLR----NKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQ 174 (314)
T ss_dssp EEECCTTEEHHHHHHHH----TCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EeecCCCCCHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchh
Confidence 99999999999998641 256899999999999999999999 78999999999999999999999999999986
Q ss_pred CCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhh
Q 041143 781 APDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAA 860 (973)
Q Consensus 781 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (973)
..... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.......... .. ...
T Consensus 175 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~------~~-------~~~ 240 (314)
T 3com_A 175 LTDTM-AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIF------MI-------PTN 240 (314)
T ss_dssp CBTTB-SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH------HH-------HHS
T ss_pred hhhhc-cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHH------HH-------hcC
Confidence 54322 12334579999999999999999999999999999999999999998665332111 01 111
Q ss_pred cCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 861 IDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+.+.. .......+.+++.+|++.||.+||++.++++ +++++.
T Consensus 241 ~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~--~~~~~~ 284 (314)
T 3com_A 241 PPPTFRK---PELWSDNFTDFVKQCLVKSPEQRATATQLLQ--HPFVRS 284 (314)
T ss_dssp CCCCCSS---GGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT--SHHHHT
T ss_pred CCcccCC---cccCCHHHHHHHHHHccCChhhCcCHHHHHh--CHHHhc
Confidence 1111110 0111245789999999999999999999998 566553
No 228
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=2.3e-37 Score=347.52 Aligned_cols=275 Identities=22% Similarity=0.323 Sum_probs=208.3
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeC-----Ce
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEG-----NE 697 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 697 (973)
.++|...+.||+|+||.||+|+.. +|+.||||++... ........+.+|++++++++||||+++++++... ..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 88 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPF-DKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE 88 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-SSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeeccc-ccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence 468999999999999999999875 6889999999653 3455567789999999999999999999998764 67
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.++||||+. |+|.+++.. ..+++..+..++.||+.||+||| +++|+||||||+||+++.++.+||+|||+
T Consensus 89 ~~lv~e~~~-~~L~~~~~~------~~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (353)
T 2b9h_A 89 VYIIQELMQ-TDLHRVIST------QMLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGL 158 (353)
T ss_dssp EEEEECCCS-EEHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEEeccC-ccHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEeccc
Confidence 899999996 699988865 46899999999999999999999 78999999999999999999999999999
Q ss_pred cccCCCCCcc---------eecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 778 VKLAPDGEKS---------VVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 778 a~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
++........ ......||+.|+|||++.. ..++.++|||||||++|||++|+.||......+.... +
T Consensus 159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---~ 235 (353)
T 2b9h_A 159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLL---I 235 (353)
T ss_dssp CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH---H
T ss_pred ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHH---H
Confidence 9865432211 1223578999999998764 6789999999999999999999999987654322111 1
Q ss_pred HHHhhc-----------hhHHHhhcCccccCCccc-----HHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcC
Q 041143 848 WRIKSS-----------KEKFKAAIDPALEVNEET-----FESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWR 911 (973)
Q Consensus 848 ~~~~~~-----------~~~~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~ 911 (973)
...... .....+.+.......... ......+.+++.+|++.||++||++.|+++ +++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~~~~~~ 313 (353)
T 2b9h_A 236 FGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE--HPYLQTYH 313 (353)
T ss_dssp HHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT--SGGGTTTC
T ss_pred HHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc--CccccccC
Confidence 111000 000000000000000000 112245789999999999999999999998 77777655
Q ss_pred CCC
Q 041143 912 PIT 914 (973)
Q Consensus 912 ~~~ 914 (973)
...
T Consensus 314 ~~~ 316 (353)
T 2b9h_A 314 DPN 316 (353)
T ss_dssp CTT
T ss_pred Ccc
Confidence 443
No 229
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=5e-38 Score=344.74 Aligned_cols=257 Identities=24% Similarity=0.398 Sum_probs=200.4
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|+..+.||+|+||.||+|+.. +|+.||+|++... .....+.+.+|++++++++||||+++++++...+..++||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~--~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 95 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK--SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI 95 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC------CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC--CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence 468999999999999999999886 5899999998654 2334567899999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++|+|.+++... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 96 e~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (302)
T 2j7t_A 96 EFCPGGAVDAIMLEL----DRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNL 168 (302)
T ss_dssp ECCTTEEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHH
T ss_pred EeCCCCcHHHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccc
Confidence 999999999988652 245899999999999999999999 7899999999999999999999999999875321
Q ss_pred CCCcceecccccccCcccccccc-----cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAV-----MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
.. ........||+.|+|||++. ...++.++|||||||++|||++|+.||........ ...+..
T Consensus 169 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~~~~----- 236 (302)
T 2j7t_A 169 KT-LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV------LLKIAK----- 236 (302)
T ss_dssp HH-HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH------HHHHHH-----
T ss_pred cc-ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH------HHHHhc-----
Confidence 11 01123357999999999883 56789999999999999999999999987654321 111111
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
...+... ........+.+++.+|++.||++||++.|+++ +++++
T Consensus 237 --~~~~~~~---~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~--h~~~~ 280 (302)
T 2j7t_A 237 --SDPPTLL---TPSKWSVEFRDFLKIALDKNPETRPSAAQLLE--HPFVS 280 (302)
T ss_dssp --SCCCCCS---SGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT--STTTT
T ss_pred --cCCcccC---CccccCHHHHHHHHHHcccChhhCCCHHHHhc--ChHHh
Confidence 0011110 01111245789999999999999999999987 44444
No 230
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=9.4e-38 Score=356.69 Aligned_cols=264 Identities=23% Similarity=0.252 Sum_probs=202.5
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC--------CCceeeeeeEEE-
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR--------HRHLVSLLGYSI- 693 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~- 693 (973)
.++|...+.||+|+||.||+|+.. +++.||||+++. .....+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~ 112 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS---AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI 112 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec---CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence 368999999999999999999764 688999999964 3455678899999999985 788999999988
Q ss_pred ---eCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC-CeeeccCCCCcEEECCCC-
Q 041143 694 ---EGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ-TFIHRDLKSSNILLDDDY- 768 (973)
Q Consensus 694 ---~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~-~ivH~Dikp~Nill~~~~- 768 (973)
.....++||||+ +|+|.+++... ....+++..+..++.||+.||+||| ++ +|+||||||+|||++.++
T Consensus 113 ~~~~~~~~~lv~e~~-~~~l~~~~~~~---~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~ 185 (397)
T 1wak_A 113 SGVNGTHICMVFEVL-GHHLLKWIIKS---NYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQ 185 (397)
T ss_dssp EETTEEEEEEEECCC-CCBHHHHHHHT---TTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHH
T ss_pred cCCCCceEEEEEecc-CccHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccch
Confidence 455789999999 67777777542 2256899999999999999999999 66 999999999999999775
Q ss_pred ------------------------------------------------CEEEeeccccccCCCCCcceecccccccCccc
Q 041143 769 ------------------------------------------------RAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLA 800 (973)
Q Consensus 769 ------------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~a 800 (973)
.+||+|||+++..... .....||+.|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~a 261 (397)
T 1wak_A 186 YIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRS 261 (397)
T ss_dssp HHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCC
T ss_pred hhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccC
Confidence 8999999999865432 334579999999
Q ss_pred ccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHH---HHHHHHHHHhhc-hhH-------HHhhcCcc--c--
Q 041143 801 PEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESR---YLAEWFWRIKSS-KEK-------FKAAIDPA--L-- 865 (973)
Q Consensus 801 PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~---~~~~~~~~~~~~-~~~-------~~~~~~~~--l-- 865 (973)
||++.+..++.++|||||||++|||++|+.||......+.. .....+...... ... ....+... +
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1wak_A 262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH 341 (397)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSS
T ss_pred ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccc
Confidence 99999999999999999999999999999999865532211 111111111100 000 00000000 0
Q ss_pred --------------cCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 866 --------------EVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 866 --------------~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
............+.+|+.+||+.||++|||+.||++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 342 ITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred ccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 000123455567889999999999999999999997
No 231
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=4.7e-37 Score=345.97 Aligned_cols=284 Identities=21% Similarity=0.279 Sum_probs=201.0
Q ss_pred HHHHHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe
Q 041143 619 VLRKVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE 697 (973)
Q Consensus 619 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 697 (973)
......++|...+.||+|+||.||+|+.. +|+.||||++...... ...+.+|++.++.++||||+++++++...+.
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF---RNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC---CCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc---cHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 44567789999999999999999999875 6899999998654222 2356778888999999999999999976433
Q ss_pred -------EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC-CCC
Q 041143 698 -------RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD-DYR 769 (973)
Q Consensus 698 -------~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~-~~~ 769 (973)
.++||||+++ +|...+..... ....+++..+..++.|++.||+|||.. +++|+||||||+|||++. ++.
T Consensus 94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~ 170 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPD-TLHRCCRNYYR-RQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGT 170 (360)
T ss_dssp SCTTCEEEEEEEECCSC-BHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTE
T ss_pred ccccceeEEEEeecccc-cHHHHHHHHhh-cccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCc
Confidence 7899999975 66555544222 235689999999999999999999943 679999999999999997 899
Q ss_pred EEEeeccccccCCCCCcceecccccccCcccccccccCc-CCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 770 AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGK-ITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 770 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
+||+|||+++...... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||........ +.....
T Consensus 171 ~kl~Dfg~a~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~--~~~~~~ 246 (360)
T 3e3p_A 171 LKLCDFGSAKKLSPSE--PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ--LHEIVR 246 (360)
T ss_dssp EEECCCTTCBCCCTTS--CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHHH
T ss_pred EEEeeCCCceecCCCC--CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH--HHHHHH
Confidence 9999999998665432 233457899999999987654 89999999999999999999999987654332 112111
Q ss_pred HHhhchhHHHhhcCcccc------C---------CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhcCCC
Q 041143 849 RIKSSKEKFKAAIDPALE------V---------NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKWRPI 913 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~------~---------~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~~~~ 913 (973)
............+++... . ..........+.+++.+|++.||++|||+.|+++ +++++.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~f~~~~~~ 324 (360)
T 3e3p_A 247 VLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC--HPYFDELHDP 324 (360)
T ss_dssp HHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT--SGGGGGGGCT
T ss_pred HcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc--CccccccCCc
Confidence 111111111111111100 0 0001113456889999999999999999999998 8888765543
Q ss_pred C
Q 041143 914 T 914 (973)
Q Consensus 914 ~ 914 (973)
.
T Consensus 325 ~ 325 (360)
T 3e3p_A 325 A 325 (360)
T ss_dssp T
T ss_pred c
Confidence 3
No 232
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.6e-38 Score=357.38 Aligned_cols=260 Identities=11% Similarity=0.080 Sum_probs=186.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhc--CCCceeeee-------eEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKV--RHRHLVSLL-------GYSI 693 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~~ 693 (973)
.+|...+.||+|+||.||+|++. +|+.||||+++.... .....+.+.+|+++++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45888999999999999999875 789999999987543 334566788885555444 699988755 4444
Q ss_pred eC-----------------CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHH------HHHHHHHHHHHHHHHhhccC
Q 041143 694 EG-----------------NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRR------LSIALDVARGMEYLHCLARQ 750 (973)
Q Consensus 694 ~~-----------------~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~------~~i~~~ia~gl~~LH~~~~~ 750 (973)
.. ...++||||++ |+|.+++.... ..+.+..+ ..++.||++||+||| ++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~----~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~ 213 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD----FVYVFRGDEGILALHILTAQLIRLAANLQ---SK 213 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH----HSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HT
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc----cccchhhhhhhhhHHHHHHHHHHHHHHHH---HC
Confidence 33 33799999998 89999997642 23455666 788899999999999 88
Q ss_pred CeeeccCCCCcEEECCCCCEEEeeccccccCCCCCcceecccccccCccccccccc--CcCCCchhHHhHHHHHHHHHhC
Q 041143 751 TFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVM--GKITTKADVFSYGVVLMELLTG 828 (973)
Q Consensus 751 ~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg 828 (973)
+|+||||||+|||++.++.+||+|||+++..... .....||+.|+|||++.+ ..++.++|||||||++|||++|
T Consensus 214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg 289 (371)
T 3q60_A 214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL 289 (371)
T ss_dssp TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHS
T ss_pred CCccCcCCHHHEEECCCCCEEEEecceeeecCCC----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999865431 224467799999999987 7799999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 829 LAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 829 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+.||....+...... . ...........+... ........+.+++.+||+.||++||++.|+++ +++++
T Consensus 290 ~~Pf~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~f~ 357 (371)
T 3q60_A 290 FLPFGLVTPGIKGSW--------K-RPSLRVPGTDSLAFG-SCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME--TPEFL 357 (371)
T ss_dssp SCSTTBCCTTCTTCC--------C-BCCTTSCCCCSCCCT-TSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT--SHHHH
T ss_pred CCCCCCcCcccccch--------h-hhhhhhccccccchh-hccCCCHHHHHHHHHHcCCChhhCCCHHHHhc--CHHHH
Confidence 999987643211000 0 000000001111100 00122345789999999999999999999987 55544
No 233
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.7e-37 Score=338.15 Aligned_cols=260 Identities=25% Similarity=0.324 Sum_probs=208.1
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC---C----hHHHHHHHHHHHHHHhcC-CCceeeeeeEEE
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT---T----TKALDEFQSEIAVLSKVR-HRHLVSLLGYSI 693 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~---~----~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 693 (973)
..++|...+.||+|+||.||+|... +|+.||||+++.... . ....+.+.+|++++++++ ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3478999999999999999999875 688999999975421 1 223567889999999995 999999999999
Q ss_pred eCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEe
Q 041143 694 EGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVS 773 (973)
Q Consensus 694 ~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~ 773 (973)
..+..++||||+++|+|.+++.. ...+++.++..++.||+.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~-----~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~ 166 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTE-----KVTLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLT 166 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHH-----HSSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEEC
T ss_pred cCCeEEEEEeccCCCcHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEe
Confidence 99999999999999999999965 246899999999999999999999 7899999999999999999999999
Q ss_pred eccccccCCCCCcceecccccccCcccccccc------cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHH
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV------MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWF 847 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 847 (973)
|||+++...... ......||+.|+|||++. ...++.++||||||+++|||++|+.||.........
T Consensus 167 dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~------ 238 (298)
T 1phk_A 167 DFGFSCQLDPGE--KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML------ 238 (298)
T ss_dssp CCTTCEECCTTC--CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH------
T ss_pred cccchhhcCCCc--ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHH------
Confidence 999998654432 234467999999999885 456889999999999999999999999765532211
Q ss_pred HHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 848 WRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 848 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..+.... .. .. ..........+.+++.+|++.||++||++.|+++ ++++++
T Consensus 239 ~~~~~~~------~~--~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~--h~~~~~ 289 (298)
T 1phk_A 239 RMIMSGN------YQ--FG-SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA--HPFFQQ 289 (298)
T ss_dssp HHHHHTC------CC--CC-TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT--SGGGCT
T ss_pred HHHhcCC------cc--cC-cccccccCHHHHHHHHHHccCCcccCCCHHHHHh--ChHhhh
Confidence 1111100 00 00 0000122345789999999999999999999998 666554
No 234
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.2e-37 Score=345.70 Aligned_cols=274 Identities=22% Similarity=0.346 Sum_probs=204.7
Q ss_pred HhcCccccCcccccCccEEEEEEE--CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc---CCCceeeeeeEEE----
Q 041143 623 VTQNFAQENELGRGGFGTVYKGEL--EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV---RHRHLVSLLGYSI---- 693 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~--~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 693 (973)
..++|...+.||+|+||.||+|+. .+|+.||||+++...........+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 447899999999999999999987 4688999999865432222223566777777766 8999999999987
Q ss_pred -eCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEE
Q 041143 694 -EGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKV 772 (973)
Q Consensus 694 -~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl 772 (973)
.....++||||++ |+|.+++.... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl 161 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVP---EPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKL 161 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSC---TTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEE
Confidence 4567899999997 69999997532 245899999999999999999999 789999999999999999999999
Q ss_pred eeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhh
Q 041143 773 SDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKS 852 (973)
Q Consensus 773 ~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 852 (973)
+|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. +.........
T Consensus 162 ~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~i~~~~~~ 237 (326)
T 1blx_A 162 ADFGLARIYSFQ--MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ--LGKILDVIGL 237 (326)
T ss_dssp CSCCSCCCCCGG--GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH--HHHHHHHHCC
T ss_pred ecCcccccccCC--CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHH--HHHHHHHcCC
Confidence 999999865432 223446799999999999999999999999999999999999999987654322 1111111000
Q ss_pred c-hhHHHhhcC-cc--cc------CCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 853 S-KEKFKAAID-PA--LE------VNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 853 ~-~~~~~~~~~-~~--l~------~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
. ......... +. +. ...........+.+++.+|++.||++||++.|+++ +++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~--hp~~~~ 302 (326)
T 1blx_A 238 PGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS--HPYFQD 302 (326)
T ss_dssp CCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT--SGGGTT
T ss_pred CCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc--Cccccc
Confidence 0 000000000 00 00 00000112345779999999999999999999997 666554
No 235
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=3e-37 Score=343.07 Aligned_cols=261 Identities=17% Similarity=0.276 Sum_probs=201.9
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEe--CCeEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIE--GNERLL 700 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~l 700 (973)
++|+..+.||+|+||.||+|+. .+++.||||+++.. . .+.+.+|++++++++ ||||+++++++.+ ....++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l 110 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--K---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL 110 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC--C---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc--c---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence 6789999999999999999976 56899999998643 1 356889999999997 9999999999998 667899
Q ss_pred EEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC-CEEEeeccccc
Q 041143 701 VYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY-RAKVSDFGLVK 779 (973)
Q Consensus 701 V~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~-~~kl~DfGla~ 779 (973)
||||+++++|.+++. .+++.++..++.||+.||+||| +++|+||||||+|||++.++ .+||+|||+++
T Consensus 111 v~e~~~~~~l~~~~~--------~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~ 179 (330)
T 3nsz_A 111 VFEHVNNTDFKQLYQ--------TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE 179 (330)
T ss_dssp EEECCCCCCHHHHGG--------GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEeccCchhHHHHHH--------hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCce
Confidence 999999999988773 3788999999999999999999 88999999999999999776 89999999998
Q ss_pred cCCCCCcceecccccccCccccccccc-CcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHH
Q 041143 780 LAPDGEKSVVTRLAGTFGYLAPEYAVM-GKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFK 858 (973)
Q Consensus 780 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (973)
....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||........ .+....... . .....
T Consensus 180 ~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~-~l~~~~~~~-~-~~~~~ 254 (330)
T 3nsz_A 180 FYHPGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD-QLVRIAKVL-G-TEDLY 254 (330)
T ss_dssp ECCTTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH-HHHHHHHHH-C-HHHHH
T ss_pred EcCCCCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHH-HHHHHHHhc-C-Cchhh
Confidence 6544332 344579999999999877 6789999999999999999999999965443211 111111110 0 11111
Q ss_pred hhcC-------ccc---------------cCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 859 AAID-------PAL---------------EVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 859 ~~~~-------~~l---------------~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+.++ +.+ ............+.+++.+|++.||++|||++|+++ +++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~--hp~f~ 324 (330)
T 3nsz_A 255 DYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME--HPYFY 324 (330)
T ss_dssp HHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT--SGGGT
T ss_pred hHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc--CccHh
Confidence 1000 000 000001112356889999999999999999999998 66654
No 236
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=342.13 Aligned_cols=258 Identities=24% Similarity=0.399 Sum_probs=199.8
Q ss_pred HHhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEe-----
Q 041143 622 KVTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIE----- 694 (973)
Q Consensus 622 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~----- 694 (973)
...++|...+.||+|+||.||+|+.. +|+.||||++..... ..+.+.+|+.+++++ +||||+++++++..
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~ 97 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD---EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPG 97 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS---TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--C
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc---cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcc
Confidence 34578999999999999999999874 689999999875422 235788999999999 79999999999987
Q ss_pred -CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEe
Q 041143 695 -GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVS 773 (973)
Q Consensus 695 -~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~ 773 (973)
.+..++||||+++|+|.+++.... ...+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~ 171 (326)
T 2x7f_A 98 MDDQLWLVMEFCGAGSVTDLIKNTK---GNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLV 171 (326)
T ss_dssp CCCEEEEEEECCTTEEHHHHHHHSG---GGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEEC
T ss_pred ccceEEEEEEcCCCCcHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEe
Confidence 467899999999999999997632 256899999999999999999999 7899999999999999999999999
Q ss_pred eccccccCCCCCcceecccccccCcccccccc-----cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV-----MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
|||++....... .......||+.|+|||++. ...++.++|||||||++|||++|+.||..........
T Consensus 172 Dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~------ 244 (326)
T 2x7f_A 172 DFGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF------ 244 (326)
T ss_dssp CCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH------
T ss_pred eCcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHH------
Confidence 999988654322 1233457999999999987 5678999999999999999999999997665432211
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
.+ .....+.+.... ....+.+++.+|++.||++||++.++++ +++++
T Consensus 245 ~~-------~~~~~~~~~~~~----~~~~l~~li~~~l~~dp~~Rps~~~ll~--hp~~~ 291 (326)
T 2x7f_A 245 LI-------PRNPAPRLKSKK----WSKKFQSFIESCLVKNHSQRPATEQLMK--HPFIR 291 (326)
T ss_dssp HH-------HHSCCCCCSCSC----SCHHHHHHHHHHCCSSGGGSCCHHHHHT--SHHHH
T ss_pred Hh-------hcCccccCCccc----cCHHHHHHHHHHhccChhhCCCHHHHhh--ChHHh
Confidence 01 111111111111 1235789999999999999999999998 56655
No 237
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.6e-36 Score=343.99 Aligned_cols=270 Identities=20% Similarity=0.218 Sum_probs=207.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CC-----ceeeeeeEEEeCC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HR-----HLVSLLGYSIEGN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~ 696 (973)
.++|...+.||+|+||.||+|... +++.||||+++. .....+++.+|+++++.++ |+ +|+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~ 129 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN---KKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN 129 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS---SHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec---cHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence 478999999999999999999875 678999999974 3445667888999998885 55 4999999999999
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC--CCCCEEEee
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD--DDYRAKVSD 774 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~--~~~~~kl~D 774 (973)
..++||||++ |+|.+++.... ...+++..+..++.|++.||+|||+. +.+|+||||||+|||++ .++.+||+|
T Consensus 130 ~~~lv~e~~~-~~L~~~l~~~~---~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~D 204 (382)
T 2vx3_A 130 HLCLVFEMLS-YNLYDLLRNTN---FRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVD 204 (382)
T ss_dssp EEEEEEECCC-CBHHHHHHHTT---TSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECC
T ss_pred ceEEEEecCC-CCHHHHHhhcC---cCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEe
Confidence 9999999995 69999997632 24589999999999999999999942 47899999999999994 578899999
Q ss_pred ccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhch
Q 041143 775 FGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSK 854 (973)
Q Consensus 775 fGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~ 854 (973)
||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||......+... ..........
T Consensus 205 FG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~--~i~~~~~~~~ 278 (382)
T 2vx3_A 205 FGSSCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMN--KIVEVLGIPP 278 (382)
T ss_dssp CTTCEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH--HHHHHHCSCC
T ss_pred ccCceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH--HHHHHhCCCC
Confidence 9999866432 234679999999999999999999999999999999999999998766433211 1111100000
Q ss_pred h-------HHHhhcCcc----c------------------------------------cCCcccHHHHHHHHHHHHHhhc
Q 041143 855 E-------KFKAAIDPA----L------------------------------------EVNEETFESISIVAELAGHCTA 887 (973)
Q Consensus 855 ~-------~~~~~~~~~----l------------------------------------~~~~~~~~~~~~~~~l~~~cl~ 887 (973)
. .....++.. . ........+...+.+|+.+||+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~ 358 (382)
T 2vx3_A 279 AHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLD 358 (382)
T ss_dssp HHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcC
Confidence 0 001111000 0 0000112334578899999999
Q ss_pred cCCCCCCCHhHHHHHHHHhhhh
Q 041143 888 REPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 888 ~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
.||++|||++|+++ ++++++
T Consensus 359 ~dP~~Rpta~e~L~--hp~f~~ 378 (382)
T 2vx3_A 359 YDPKTRIQPYYALQ--HSFFKK 378 (382)
T ss_dssp SCTTTSCCHHHHTT--SGGGCC
T ss_pred CChhhCCCHHHHhc--Cccccc
Confidence 99999999999998 666554
No 238
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=7.2e-38 Score=350.89 Aligned_cols=271 Identities=20% Similarity=0.318 Sum_probs=206.8
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCCh---------------HHHHHHHHHHHHHHhcCCCceeee
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTT---------------KALDEFQSEIAVLSKVRHRHLVSL 688 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~---------------~~~~~~~~E~~~l~~l~h~niv~l 688 (973)
.++|...+.||+|+||.||+|.. +|+.||||++....... ...+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 36899999999999999999998 89999999986431111 112689999999999999999999
Q ss_pred eeEEEeCCeEEEEEEecCCCCHHHHHHhh---hhccCCCCCHHHHHHHHHHHHHHHHHHHhhcc-CCeeeccCCCCcEEE
Q 041143 689 LGYSIEGNERLLVYEYMPHGALSRHLFRW---EKLQLKPLSWTRRLSIALDVARGMEYLHCLAR-QTFIHRDLKSSNILL 764 (973)
Q Consensus 689 ~~~~~~~~~~~lV~e~~~~g~L~~~l~~~---~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~-~~ivH~Dikp~Nill 764 (973)
++++.+.+..++||||+++|+|.+++... .......+++..+..++.||+.||+||| + ++|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 99999999999999999999999883211 1112367899999999999999999999 6 899999999999999
Q ss_pred CCCCCEEEeeccccccCCCCCcceecccccccCcccccccccC-cCCC-chhHHhHHHHHHHHHhCCCCCCCCChhhHHH
Q 041143 765 DDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMG-KITT-KADVFSYGVVLMELLTGLAALDEERPEESRY 842 (973)
Q Consensus 765 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~ 842 (973)
+.++.+||+|||+++..... ......||+.|+|||++.+. .++. ++|||||||++|||++|+.||........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-- 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVE-- 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHH--
T ss_pred cCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHH--
Confidence 99999999999999865432 34456799999999999877 6666 99999999999999999999986654211
Q ss_pred HHHHHHHHhhchhHHHhh----cCccccC--CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 843 LAEWFWRIKSSKEKFKAA----IDPALEV--NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
+ ...+......+... ..+.... ..........+.+++.+|++.||.+||++.|+++ +++++
T Consensus 261 ~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~--hp~f~ 327 (348)
T 2pml_X 261 L---FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK--HEWLA 327 (348)
T ss_dssp H---HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT--SGGGT
T ss_pred H---HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc--Ccccc
Confidence 1 11111110000000 0000000 0000122345789999999999999999999998 55554
No 239
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=1.1e-36 Score=333.96 Aligned_cols=252 Identities=23% Similarity=0.380 Sum_probs=192.6
Q ss_pred HhcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe-------
Q 041143 623 VTQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE------- 694 (973)
Q Consensus 623 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------- 694 (973)
..++|+..+.||+|+||.||+|+.. +|+.||||++.. .....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH---TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE---EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec---cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 4568999999999999999999874 789999999864 34556789999999999999999999999865
Q ss_pred ------CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCC
Q 041143 695 ------GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDY 768 (973)
Q Consensus 695 ------~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~ 768 (973)
.+..++||||+++|+|.+++... ...+++.+++.++.|+++||+||| +++|+||||||+||+++.++
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~ 153 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSE----NLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESR 153 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHS----CGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTS
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhcc----ccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCC
Confidence 34678999999999999999752 245788999999999999999999 78999999999999999999
Q ss_pred CEEEeeccccccCCCCC-------------cceecccccccCcccccccccC-cCCCchhHHhHHHHHHHHHhCCCCCCC
Q 041143 769 RAKVSDFGLVKLAPDGE-------------KSVVTRLAGTFGYLAPEYAVMG-KITTKADVFSYGVVLMELLTGLAALDE 834 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvvl~elltg~~p~~~ 834 (973)
.+||+|||+++...... ........||+.|+|||++.+. .++.++|||||||++|||++ ||..
T Consensus 154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~ 230 (303)
T 1zy4_A 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST 230 (303)
T ss_dssp CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC
Confidence 99999999998554221 1122345799999999998754 78999999999999999998 4432
Q ss_pred CChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 835 ERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
. .+.. .....+.... ..+.+.+ .......+.+++.+|++.||.+||++.|+++
T Consensus 231 ~--~~~~---~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 231 G--MERV---NILKKLRSVS----IEFPPDF-----DDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp H--HHHH---HHHHHHHSTT----CCCCTTC-----CTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred c--hhHH---HHHHhccccc----cccCccc-----cccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 1 1111 1111111100 0111111 1122345779999999999999999999998
No 240
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=380.55 Aligned_cols=391 Identities=18% Similarity=0.148 Sum_probs=263.8
Q ss_pred CcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCC-C-CCCCCCccceeeccCCCCCCCCccccC
Q 041143 58 PWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKL-P-TFSGLSELEFAYLDFNEFDTIPSDFFD 135 (973)
Q Consensus 58 ~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~L~~N~l~~i~~~~f~ 135 (973)
.|..|-+-..+++.|+|++|.|++..+..|.++++|++|+|++|.+.+.+ | .|.++++|++|+|++|+|+.+.+..|.
T Consensus 15 ~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 46666663468999999999999999999999999999999999766644 4 699999999999999999999999999
Q ss_pred CCCCccEEEcccCCCCCccCCCCCcc--cccccccCeeecccccccCCcc-hhccCCCCCCeEEccCCcCcccCChhhhh
Q 041143 136 GLSSVRVLALDYNPFNKTFGWSIPDS--LANSVQLTNLSLINCNLVGPLP-DFLGTLPSLAALKLSYNRLSGVIPASFGQ 212 (973)
Q Consensus 136 ~l~~L~~L~Ls~N~l~~~~~~~ip~~--~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 212 (973)
++++|++|+|++|.+++. +|.. +.++++|++|+|++|.+++..+ ..|+++++|++|+|++|++++..+..+..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~----~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDA----VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SCSSCCCEECTTCCCSSC----CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred CCcccCEeeCcCCCCCcc----cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 999999999999999874 4544 8899999999999999987655 57899999999999999998877776643
Q ss_pred hH---------------------------------HHHHhhccc------------------------------------
Q 041143 213 SL---------------------------------MQILWLNDQ------------------------------------ 223 (973)
Q Consensus 213 ~~---------------------------------~~~~~l~~~------------------------------------ 223 (973)
.. ++.+.+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 20 111111111
Q ss_pred ------------------------CCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccC
Q 041143 224 ------------------------DAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLI 279 (973)
Q Consensus 224 ------------------------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~ 279 (973)
.+.........|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 00011111233455566666666666666555666666666666666666666655
Q ss_pred ccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCc-c----------------cCC-------------
Q 041143 280 PKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGI-E----------------CAP------------- 328 (973)
Q Consensus 280 p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~-~----------------~~~------------- 328 (973)
|..|..+ +|+.|++++|.+.+..+..+...-.+...++..+.... . ..+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 6666555 56666666666654444322211111111111110000 0 000
Q ss_pred -------c--chhhhhhccCCCCCCcccCCCCCCC----------------CCCC----CccccccCCCCcccEEecCCC
Q 041143 329 -------D--VNVLLDFLGGVNYPVNLVSQWPGND----------------PCQG----PWLGLSCTSNSKVSIINLPRH 379 (973)
Q Consensus 329 -------~--~~~~~~~l~~l~~~~n~~~~~~~~~----------------~~~~----~~~~~~~~~~~~L~~L~Ls~N 379 (973)
. ....+..+..+++..|.+...+... .... ......+..+++|+.|+|++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 0 0001233444444444444322110 0000 011123556788899999999
Q ss_pred cCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC-CCcccceeecCCccccCCC
Q 041143 380 NLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE-FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 380 ~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~N~~~c~~~ 454 (973)
++++.+|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|. +..+..+++.+|||.|...
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSS
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccc
Confidence 99988888899999999999999999876666666 8899999999999998886 4567789999999999754
No 241
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=2e-36 Score=339.99 Aligned_cols=267 Identities=20% Similarity=0.292 Sum_probs=207.0
Q ss_pred hcCccccCcccccCccEEEEEEEC-CC-CEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCc------eeeeeeEEEeC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DG-TKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRH------LVSLLGYSIEG 695 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g-~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~ 695 (973)
.++|...+.||+|+||.||+|... ++ +.||||+++. .....+.+.+|++++++++|++ ++.+++++...
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 94 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN---VGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFH 94 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEET
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc---cccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeC
Confidence 368999999999999999999875 34 6899999864 3455677889999999997665 99999999999
Q ss_pred CeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE-----------
Q 041143 696 NERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL----------- 764 (973)
Q Consensus 696 ~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill----------- 764 (973)
+..++||||+ +|++.+++... ....+++.++..++.||+.||+||| +++|+||||||+|||+
T Consensus 95 ~~~~lv~e~~-~~~l~~~l~~~---~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~ 167 (355)
T 2eu9_A 95 GHMCIAFELL-GKNTFEFLKEN---NFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNE 167 (355)
T ss_dssp TEEEEEEECC-CCBHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECC
T ss_pred CeEEEEEecc-CCChHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEecccccccccc
Confidence 9999999999 77887777652 2246899999999999999999999 8899999999999999
Q ss_pred --------CCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCC
Q 041143 765 --------DDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEER 836 (973)
Q Consensus 765 --------~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~ 836 (973)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 168 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 243 (355)
T 2eu9_A 168 HKSCEEKSVKNTSIRVADFGSATFDHEH----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE 243 (355)
T ss_dssp C-CCCEEEESCCCEEECCCTTCEETTSC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred cccccccccCCCcEEEeecCcccccccc----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC
Confidence 56789999999999865432 234579999999999999999999999999999999999999998766
Q ss_pred hhhHHHHHHHHHHHhhc--hhH--------------------------HHhhcCccccCCcccHHHHHHHHHHHHHhhcc
Q 041143 837 PEESRYLAEWFWRIKSS--KEK--------------------------FKAAIDPALEVNEETFESISIVAELAGHCTAR 888 (973)
Q Consensus 837 ~~~~~~~~~~~~~~~~~--~~~--------------------------~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~ 888 (973)
..+..... ...... ... ......+..............+.+++.+||+.
T Consensus 244 ~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~ 320 (355)
T 2eu9_A 244 NREHLVMM---EKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEF 320 (355)
T ss_dssp HHHHHHHH---HHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHH---HHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcC
Confidence 43322111 111100 000 00000000000111123345688999999999
Q ss_pred CCCCCCCHhHHHHHHHHhhhh
Q 041143 889 EPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 889 dP~~RPs~~~v~~~L~~~~~~ 909 (973)
||++|||+.|+++ ++++..
T Consensus 321 dP~~Rpt~~e~l~--hp~f~~ 339 (355)
T 2eu9_A 321 DPAQRITLAEALL--HPFFAG 339 (355)
T ss_dssp STTTSCCHHHHTT--SGGGGG
T ss_pred ChhhCcCHHHHhc--ChhhcC
Confidence 9999999999997 666654
No 242
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.3e-37 Score=343.56 Aligned_cols=260 Identities=25% Similarity=0.364 Sum_probs=184.3
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHH-HHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIA-VLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|... +|+.||||+++... ......++..|+. +++.++||||+++++++...+..++||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTV-DEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCC-CHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeeccc-CchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 68889999999999999999875 68999999997653 3344455666666 666789999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC-CeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ-TFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~-~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
||++ |+|.+++..........+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMS-TSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCS-EEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecC-CChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 9997 58888876543333467899999999999999999999 66 9999999999999999999999999999865
Q ss_pred CCCCcceecccccccCccccccc----ccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYA----VMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
.... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||....... ..+
T Consensus 177 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---------------~~~ 239 (327)
T 3aln_A 177 VDSI--AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF---------------DQL 239 (327)
T ss_dssp -------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------------------
T ss_pred cccc--ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH---------------HHH
Confidence 4332 22334799999999998 46678999999999999999999999997643210 001
Q ss_pred HhhcC---ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 858 KAAID---PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 858 ~~~~~---~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...+. +.+. ..........+.+++.+|++.||++||++.||++ .+++..
T Consensus 240 ~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~--hp~~~~ 291 (327)
T 3aln_A 240 TQVVKGDPPQLS-NSEEREFSPSFINFVNLCLTKDESKRPKYKELLK--HPFILM 291 (327)
T ss_dssp CCCCCSCCCCCC-CCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT--SHHHHH
T ss_pred HHHhcCCCCCCC-CcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh--ChHHHH
Confidence 11111 1111 0001112345889999999999999999999998 555543
No 243
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=6.3e-37 Score=352.75 Aligned_cols=253 Identities=26% Similarity=0.332 Sum_probs=188.6
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 703 (973)
+.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++.+.+..++|||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~-----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E 89 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID-----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALE 89 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG-----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH-----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEe
Confidence 345566889999999998777778999999998643 234678899999986 89999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccC--CCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCC-------------C
Q 041143 704 YMPHGALSRHLFRWEKLQL--KPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDD-------------Y 768 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~--~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~-------------~ 768 (973)
|+. |+|.+++........ ...++..++.++.||+.||+||| +++|+||||||+|||++.+ +
T Consensus 90 ~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~ 165 (434)
T 2rio_A 90 LCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENL 165 (434)
T ss_dssp CCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSC
T ss_pred cCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCce
Confidence 995 799999976332211 11244466889999999999999 7899999999999999754 4
Q ss_pred CEEEeeccccccCCCCCcc---eecccccccCccccccccc-------CcCCCchhHHhHHHHHHHHHh-CCCCCCCCCh
Q 041143 769 RAKVSDFGLVKLAPDGEKS---VVTRLAGTFGYLAPEYAVM-------GKITTKADVFSYGVVLMELLT-GLAALDEERP 837 (973)
Q Consensus 769 ~~kl~DfGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~ 837 (973)
.+||+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||++ |+.||.....
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~ 245 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS 245 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh
Confidence 8999999999866543322 1234579999999999875 678999999999999999999 9999976543
Q ss_pred hhHHHHHHHHHHHhhchhHHHhhcC-ccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 838 EESRYLAEWFWRIKSSKEKFKAAID-PALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
... . + ...... +... ..........+.+++.+|++.||.+||++.||++
T Consensus 246 ~~~-~-------i------~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RES-N-------I------IRGIFSLDEMK-CLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHH-H-------H------HHTCCCCCCCT-TCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHH-H-------H------hcCCCCccccc-ccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 221 0 0 011111 1111 1123345567889999999999999999999987
No 244
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=5.7e-37 Score=347.10 Aligned_cols=269 Identities=20% Similarity=0.324 Sum_probs=203.0
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-----------CCceeeeeeEE
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-----------HRHLVSLLGYS 692 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~ 692 (973)
++|...+.||+|+||.||+|+. .+++.||||++.. .....+.+.+|++++++++ |+||+++++++
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~ 95 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG---DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF 95 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS---CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC---CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence 5799999999999999999986 4688999999864 3445567889999999886 89999999998
Q ss_pred EeCC----eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccC-CeeeccCCCCcEEEC--
Q 041143 693 IEGN----ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQ-TFIHRDLKSSNILLD-- 765 (973)
Q Consensus 693 ~~~~----~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~-~ivH~Dikp~Nill~-- 765 (973)
...+ ..++||||+ +++|.+++.... ...+++..+..++.||+.||+||| ++ +|+||||||+|||++
T Consensus 96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~---~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~ 168 (373)
T 1q8y_A 96 NHKGPNGVHVVMVFEVL-GENLLALIKKYE---HRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIV 168 (373)
T ss_dssp EEEETTEEEEEEEECCC-CEEHHHHHHHTT---TSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEE
T ss_pred hccCCCCceEEEEEecC-CCCHHHHHHHhh---ccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEecc
Confidence 8654 689999999 999999997632 245899999999999999999999 76 999999999999994
Q ss_pred ----CCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhh--
Q 041143 766 ----DDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEE-- 839 (973)
Q Consensus 766 ----~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~-- 839 (973)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 169 ~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~ 244 (373)
T 1q8y_A 169 DSPENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYT 244 (373)
T ss_dssp ETTTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred CCCcCcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccC
Confidence 4458999999999865432 234579999999999999999999999999999999999999998654321
Q ss_pred --HHHHHHHHHHHhhchh-------HHHhhcCcc-----c-------------cCCcccHHHHHHHHHHHHHhhccCCCC
Q 041143 840 --SRYLAEWFWRIKSSKE-------KFKAAIDPA-----L-------------EVNEETFESISIVAELAGHCTAREPYH 892 (973)
Q Consensus 840 --~~~~~~~~~~~~~~~~-------~~~~~~~~~-----l-------------~~~~~~~~~~~~~~~l~~~cl~~dP~~ 892 (973)
...+...+........ .....++.. + ............+.+++.+||+.||++
T Consensus 245 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 324 (373)
T 1q8y_A 245 KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK 324 (373)
T ss_dssp CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTT
T ss_pred ChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccc
Confidence 1111111111000000 000000000 0 001122455667889999999999999
Q ss_pred CCCHhHHHHHHHHhhhh
Q 041143 893 RPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 893 RPs~~~v~~~L~~~~~~ 909 (973)
|||++||++ +++++.
T Consensus 325 Rpt~~ell~--hp~f~~ 339 (373)
T 1q8y_A 325 RADAGGLVN--HPWLKD 339 (373)
T ss_dssp CBCHHHHHT--CGGGTT
T ss_pred cCCHHHHhh--Chhhhc
Confidence 999999998 666654
No 245
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=338.79 Aligned_cols=260 Identities=23% Similarity=0.354 Sum_probs=186.1
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
.++|...+.||+|+||.||+|... +|+.||||++..........+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 468899999999999999999875 6899999999865434444445555666788889999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhcc-CCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLAR-QTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~-~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
||+ ++.+..+... . ...+++..+..++.||++||+||| + ++|+||||||+||+++.++.+||+|||+++..
T Consensus 104 e~~-~~~~~~l~~~-~---~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~ 175 (318)
T 2dyl_A 104 ELM-GTCAEKLKKR-M---QGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL 175 (318)
T ss_dssp CCC-SEEHHHHHHH-H---TSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC---
T ss_pred ecc-CCcHHHHHHH-h---ccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhc
Confidence 999 5555544432 1 256899999999999999999999 5 39999999999999999999999999999755
Q ss_pred CCCCcceecccccccCcccccccc-----cCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhH
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAV-----MGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEK 856 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (973)
.... ......||+.|+|||++. ...++.++|||||||++|||++|+.||........ . ......
T Consensus 176 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~----~~~~~~---- 244 (318)
T 2dyl_A 176 VDDK--AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFE-V----LTKVLQ---- 244 (318)
T ss_dssp -------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-H----HHHHHH----
T ss_pred cCCc--cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHH-H----HHHHhc----
Confidence 4322 233457999999999984 56788999999999999999999999986432211 0 111111
Q ss_pred HHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhhc
Q 041143 857 FKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEKW 910 (973)
Q Consensus 857 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~~ 910 (973)
...+.+... ......+.+++.+|++.||.+||++.||++ +++++.+
T Consensus 245 ---~~~~~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~~ll~--h~~~~~~ 290 (318)
T 2dyl_A 245 ---EEPPLLPGH---MGFSGDFQSFVKDCLTKDHRKRPKYNKLLE--HSFIKRY 290 (318)
T ss_dssp ---SCCCCCCSS---SCCCHHHHHHHHHHTCSCTTTSCCHHHHTT--SHHHHHH
T ss_pred ---cCCCCCCcc---CCCCHHHHHHHHHHccCChhHCcCHHHHhh--CHHHHhc
Confidence 011111100 011235779999999999999999999998 6666554
No 246
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-37 Score=356.32 Aligned_cols=356 Identities=19% Similarity=0.209 Sum_probs=274.7
Q ss_pred CeEEeeCC----------eEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC--CCCCCCccceeeccCCCCC
Q 041143 60 PHVFCSGN----------RVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP--TFSGLSELEFAYLDFNEFD 127 (973)
Q Consensus 60 ~gv~C~~~----------~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~ 127 (973)
..|.|+.. +++.|+|++|.+++..|..|+++++|++|+|++|.+.+.++ .|.++++|++|+|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 13 YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 34889753 58999999999999999999999999999999999986543 6999999999999999999
Q ss_pred CCCccccCCCCCccEEEcccCCCCCccCCCCCcc--cccccccCeeecccccccCCcchh-ccCCCCCCeEEccCCcCcc
Q 041143 128 TIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDS--LANSVQLTNLSLINCNLVGPLPDF-LGTLPSLAALKLSYNRLSG 204 (973)
Q Consensus 128 ~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~--~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ 204 (973)
.+.+..|.++++|++|+|++|++++. +|.. +..+++|++|+|++|++++..|.. +.++++|++|+|++|++++
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccChhhccCcccCCEEeCCCCCCCcc----ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99999999999999999999999874 3443 889999999999999999887876 8999999999999999998
Q ss_pred cCChhhhhhH-HHHHhhcccCCCCCCCcch--------hhcCCccccEEEccCCccccCCCccccCC---CCCCEEeCcC
Q 041143 205 VIPASFGQSL-MQILWLNDQDAGGMTGPID--------VVAKMVSLTQLWLHGNQFTGSIPEDIGAL---SSLKDLNLNR 272 (973)
Q Consensus 205 ~~p~~~~~~~-~~~~~l~~~~~~~~~~~~~--------~~~~l~~L~~L~L~~N~l~g~~p~~~~~l---~~L~~L~Ls~ 272 (973)
..|..+.... ..+..+....+........ .+..+++|++|+|++|++++.+|..+..+ ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 8888775421 2223333333332222221 13356789999999999988777776554 5666666666
Q ss_pred Cccccc----------Cccccccc---ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccC
Q 041143 273 NQLVGL----------IPKSLANM---ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGG 339 (973)
Q Consensus 273 N~l~~~----------~p~~~~~l---~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (973)
|.+.+. .+..+..+ +|+.|++++|.+.+.+|..+. .+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~ 303 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-------------------------HFTDLEQ 303 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-------------------------TCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc-------------------------cCCCCCE
Confidence 644432 11222222 477777777777665554321 1223445
Q ss_pred CCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCC
Q 041143 340 VNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSL 419 (973)
Q Consensus 340 l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L 419 (973)
+++..|.+...+.. .+..+++|++|+|++|++++..|..|+++++|+.|+|++|+|++..|..|..+++|
T Consensus 304 L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 304 LTLAQNEINKIDDN----------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp EECTTSCCCEECTT----------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EECCCCcccccChh----------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 55555555443221 34567899999999999999999999999999999999999998889999999999
Q ss_pred CeeeCCCCcCCCCCCC----CCcccceeecCCccccCCC
Q 041143 420 RLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 420 ~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~~ 454 (973)
++|+|++|+|++.++. +.++..+++.+|++.|..+
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999987764 3466779999999998754
No 247
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.9e-36 Score=336.98 Aligned_cols=259 Identities=24% Similarity=0.277 Sum_probs=175.5
Q ss_pred HhcCccccC-cccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe----CC
Q 041143 623 VTQNFAQEN-ELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE----GN 696 (973)
Q Consensus 623 ~~~~~~~~~-~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~ 696 (973)
..++|...+ +||+|+||.||+|... +|+.||||++... .... .+....++.++||||+++++++.. ..
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~---~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 99 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS---PKAR---QEVDHHWQASGGPHIVCILDVYENMHHGKR 99 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS---HHHH---HHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc---HHHH---HHHHHHHHhcCCCChHHHHHHHhhccCCCc
Confidence 346788854 6999999999999876 6899999998653 2221 222334566799999999999876 34
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEEe
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKVS 773 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl~ 773 (973)
..++||||+++|+|.+++... ....+++.++..++.||+.||+||| +++|+||||||+||+++. ++.+||+
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~---~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~ 173 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQER---GDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLT 173 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC----CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred eEEEEEeccCCCCHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEe
Confidence 579999999999999999752 2246899999999999999999999 789999999999999976 4569999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......... .....+..
T Consensus 174 Dfg~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~~- 247 (336)
T 3fhr_A 174 DFGFAKETTQN---ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP--GMKRRIRL- 247 (336)
T ss_dssp CCTTCEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------
T ss_pred ccccceecccc---ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh--hHHHhhhc-
Confidence 99999865432 2234578999999999988899999999999999999999999997654322100 00000000
Q ss_pred hhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 854 KEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
...-.+. .........+.+++.+|++.||++||++.|+++ ++++.+
T Consensus 248 ----~~~~~~~----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~--hp~~~~ 293 (336)
T 3fhr_A 248 ----GQYGFPN----PEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN--HPWINQ 293 (336)
T ss_dssp -------CCCT----TTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH--SHHHHT
T ss_pred ----cccccCc----hhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc--Cccccc
Confidence 0000000 000112345789999999999999999999998 666654
No 248
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3.7e-37 Score=340.49 Aligned_cols=252 Identities=25% Similarity=0.353 Sum_probs=201.5
Q ss_pred HHHHHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhcC--CCceeeeeeE
Q 041143 619 VLRKVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKVR--HRHLVSLLGY 691 (973)
Q Consensus 619 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l~--h~niv~l~~~ 691 (973)
..+...++|...+.||+|+||.||+|.. .+++.||||+++...... ...+.+.+|+.++++++ |+||++++++
T Consensus 37 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~ 116 (320)
T 3a99_A 37 EKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDW 116 (320)
T ss_dssp ---CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEE
T ss_pred ccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEE
Confidence 3344567899999999999999999976 468899999986542221 12245678999999996 5999999999
Q ss_pred EEeCCeEEEEEEecCC-CCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC-CCCC
Q 041143 692 SIEGNERLLVYEYMPH-GALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD-DDYR 769 (973)
Q Consensus 692 ~~~~~~~~lV~e~~~~-g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~-~~~~ 769 (973)
+...+..++||||+.+ ++|.+++.. ...+++..+..++.||+.||+||| +.+|+||||||+||+++ +++.
T Consensus 117 ~~~~~~~~lv~e~~~~~~~L~~~l~~-----~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~ 188 (320)
T 3a99_A 117 FERPDSFVLILERPEPVQDLFDFITE-----RGALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGE 188 (320)
T ss_dssp EECSSEEEEEEECCSSEEEHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTE
T ss_pred EecCCcEEEEEEcCCCCccHHHHHhc-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCC
Confidence 9999999999999976 899999865 246899999999999999999999 78999999999999999 7899
Q ss_pred EEEeeccccccCCCCCcceecccccccCcccccccccCcC-CCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 770 AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKI-TTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 770 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
+||+|||+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....
T Consensus 189 ~kL~Dfg~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----------- 254 (320)
T 3a99_A 189 LKLIDFGSGALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE----------- 254 (320)
T ss_dssp EEECCCTTCEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----------
T ss_pred EEEeeCcccccccccc---ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-----------
Confidence 9999999998665432 334579999999999887766 6789999999999999999999964210
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
..... ...... ....+.+++.+|++.||++||++.||++ .++++
T Consensus 255 -~~~~~----~~~~~~---------~~~~~~~li~~~l~~dp~~Rps~~~ll~--hp~~~ 298 (320)
T 3a99_A 255 -IIRGQ----VFFRQR---------VSSECQHLIRWCLALRPSDRPTFEEIQN--HPWMQ 298 (320)
T ss_dssp -HHHCC----CCCSSC---------CCHHHHHHHHHHTCSSGGGSCCHHHHHT--SGGGS
T ss_pred -hhccc----cccccc---------CCHHHHHHHHHHccCChhhCcCHHHHhc--CHhhc
Confidence 00000 001111 1235779999999999999999999987 44444
No 249
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=345.43 Aligned_cols=248 Identities=24% Similarity=0.344 Sum_probs=186.7
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV~e 703 (973)
.+|...+.||+|+||+||.....+|+.||||++..... ..+.+|+++++++ +|||||++++++.+....++|||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~-----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF-----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE-----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH-----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 46888899999999997666666799999999865321 2356899999999 79999999999999999999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC-----CCCEEEeecccc
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD-----DYRAKVSDFGLV 778 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~-----~~~~kl~DfGla 778 (973)
|+. |+|.+++.... ....+.++..++.||++||+||| +.+|+||||||+|||++. ...+||+|||++
T Consensus 99 ~~~-g~L~~~l~~~~----~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a 170 (432)
T 3p23_A 99 LCA-ATLQEYVEQKD----FAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLC 170 (432)
T ss_dssp CCS-EEHHHHHHSSS----CCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEE
T ss_pred CCC-CCHHHHHHhcC----CCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccce
Confidence 995 69999996522 23455567889999999999999 789999999999999953 346889999999
Q ss_pred ccCCCCCc--ceecccccccCcccccccc---cCcCCCchhHHhHHHHHHHHHh-CCCCCCCCChhhHHHHHHHHHHHhh
Q 041143 779 KLAPDGEK--SVVTRLAGTFGYLAPEYAV---MGKITTKADVFSYGVVLMELLT-GLAALDEERPEESRYLAEWFWRIKS 852 (973)
Q Consensus 779 ~~~~~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~ 852 (973)
+....... .......||+.|+|||++. ...++.++|||||||++|||++ |+.||.......... ..
T Consensus 171 ~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~-------~~- 242 (432)
T 3p23_A 171 KKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI-------LL- 242 (432)
T ss_dssp ECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHH-------HT-
T ss_pred eeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHH-------Hh-
Confidence 86543321 2234467999999999987 4567889999999999999999 999996543221100 00
Q ss_pred chhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 853 SKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
. ................+.+++.+|++.||++||++.||++
T Consensus 243 ------~--~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 243 ------G--ACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp ------T--CCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ------c--cCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0 0001101111223345779999999999999999999995
No 250
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=336.46 Aligned_cols=250 Identities=26% Similarity=0.383 Sum_probs=193.0
Q ss_pred HHHhcCccccCcccccCccEEEEEEE-CCCCEEEEEEeecCCCCh----HHHHHHHHHHHHHHhc----CCCceeeeeeE
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTT----KALDEFQSEIAVLSKV----RHRHLVSLLGY 691 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~----~~~~~~~~E~~~l~~l----~h~niv~l~~~ 691 (973)
+...++|...+.||+|+||.||+|+. .+++.||||+++...... .....+.+|++++.++ +|+||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 44567899999999999999999976 468899999996542221 2234566799999998 89999999999
Q ss_pred EEeCCeEEEEEEe-cCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC-CCCC
Q 041143 692 SIEGNERLLVYEY-MPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD-DDYR 769 (973)
Q Consensus 692 ~~~~~~~~lV~e~-~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~-~~~~ 769 (973)
+...+..++|||| +.+++|.+++.. ...+++..++.++.||+.||+||| +.+|+||||||+||+++ .++.
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~-----~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 178 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITE-----KGPLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGC 178 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHH-----HCSCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTE
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCe
Confidence 9999999999999 889999999975 245899999999999999999999 77999999999999999 8899
Q ss_pred EEEeeccccccCCCCCcceecccccccCcccccccccCcCC-CchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHH
Q 041143 770 AKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKIT-TKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFW 848 (973)
Q Consensus 770 ~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 848 (973)
+||+|||+++...... .....||..|+|||++.+..+. .++|||||||++|||++|+.||.....
T Consensus 179 ~kl~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----------- 244 (312)
T 2iwi_A 179 AKLIDFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE----------- 244 (312)
T ss_dssp EEECCCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-----------
T ss_pred EEEEEcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH-----------
Confidence 9999999998665432 3446799999999998877664 589999999999999999999964210
Q ss_pred HHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhh
Q 041143 849 RIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVE 908 (973)
Q Consensus 849 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~ 908 (973)
... . ..... ......+.+++.+|++.||++||++.|+++ +.+++
T Consensus 245 -~~~------~----~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~e~l~--~~~~~ 288 (312)
T 2iwi_A 245 -ILE------A----ELHFP---AHVSPDCCALIRRCLAPKPSSRPSLEEILL--DPWMQ 288 (312)
T ss_dssp -HHH------T----CCCCC---TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH--STTTC
T ss_pred -Hhh------h----ccCCc---ccCCHHHHHHHHHHccCChhhCcCHHHHhc--Chhhc
Confidence 000 0 00000 011234779999999999999999999998 44444
No 251
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=345.54 Aligned_cols=316 Identities=21% Similarity=0.248 Sum_probs=251.0
Q ss_pred CCCCCCC-CCcCeEEeeCC-----------eEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCcc
Q 041143 50 GDDPCGP-PPWPHVFCSGN-----------RVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSEL 116 (973)
Q Consensus 50 ~~d~C~~-~~w~gv~C~~~-----------~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 116 (973)
.+..|.+ ..|..|.|... .++.|+|++|.|++..+..|.++++|++|+|++|.|++..| .|.++++|
T Consensus 3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82 (477)
T ss_dssp CSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccC
Confidence 3455653 24788999752 57788888888888778888888888888888888888766 68888888
Q ss_pred ceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEE
Q 041143 117 EFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALK 196 (973)
Q Consensus 117 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 196 (973)
++|+|++|+|+.+++..|.++++|++|+|++|++++. .|..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 8888888888888888888888888888888888874 667788888888888888888877788888888888888
Q ss_pred ccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccc
Q 041143 197 LSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLV 276 (973)
Q Consensus 197 Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 276 (973)
|++|++++..+.. |.++++|+.|+|++|.+++..+..|..+++|++|+|++|.+.
T Consensus 159 l~~n~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 159 LEKCNLTSIPTEA-------------------------LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EESCCCSSCCHHH-------------------------HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCcCcccChhH-------------------------hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 8888887443333 345888888888888888777778888888888888888777
Q ss_pred ccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCC
Q 041143 277 GLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDP 355 (973)
Q Consensus 277 ~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~ 355 (973)
+.+|..+... +|+.|+|++|.|++ +|.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~--------------------------------------------------- 241 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTA-VPY--------------------------------------------------- 241 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCS-CCH---------------------------------------------------
T ss_pred cccCcccccCccccEEECcCCcccc-cCH---------------------------------------------------
Confidence 7666554433 78888888888773 221
Q ss_pred CCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC
Q 041143 356 CQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE 435 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 435 (973)
..+..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++.++.
T Consensus 242 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 242 -------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp -------HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred -------HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 0234567888999999999888888888899999999999999888888899999999999999999887664
Q ss_pred ----CCcccceeecCCccccCC
Q 041143 436 ----FHDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 436 ----~~~~~~~~~~~N~~~c~~ 453 (973)
+.++..+.+.+|||.|..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp GBSCGGGCCEEECCSSCEECSG
T ss_pred HcCCCcccCEEEccCCCccCcc
Confidence 345667888999988864
No 252
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=3.6e-36 Score=354.87 Aligned_cols=272 Identities=24% Similarity=0.371 Sum_probs=204.7
Q ss_pred hcCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe------CC
Q 041143 624 TQNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE------GN 696 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 696 (973)
.++|...+.||+|+||.||+|... +|+.||||+++.. ......+.+.+|++++++++||||+++++++.. .+
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~-~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQE-LSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSC-CCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEeccc-CCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 368999999999999999999774 6899999998764 345667789999999999999999999998765 66
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCC---EEEe
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYR---AKVS 773 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~---~kl~ 773 (973)
..++||||+++|+|.+++.... ....+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~--~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFE--NCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSS--CTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred eEEEEEEeCCCCCHHHHHHhcc--cCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEc
Confidence 7799999999999999997632 2246899999999999999999999 789999999999999997765 9999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..|.......
T Consensus 167 DFG~a~~~~~~~--~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~-----~~~~~~i~~~ 239 (676)
T 3qa8_A 167 DLGYAKELDQGE--LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP-----VQWHGKVREK 239 (676)
T ss_dssp SCCCCCBTTSCC--CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH-----HHSSTTCC--
T ss_pred cccccccccccc--ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch-----hhhhhhhhcc
Confidence 999998665432 234568999999999999999999999999999999999999999765321 1111111000
Q ss_pred hh---HHHhhcCccccC-------CcccHHHHHHHHHHHHHhhccCCCCCCCHhH-----HHHHHHHhhh
Q 041143 854 KE---KFKAAIDPALEV-------NEETFESISIVAELAGHCTAREPYHRPDMGH-----VVNVLSPLVE 908 (973)
Q Consensus 854 ~~---~~~~~~~~~l~~-------~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~-----v~~~L~~~~~ 908 (973)
.. .........+.. ..........+.+++..|++.||++||++.| ..+.++.+..
T Consensus 240 ~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~ 309 (676)
T 3qa8_A 240 SNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309 (676)
T ss_dssp ----CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred cchhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence 00 000001111100 1112234567889999999999999999988 4555655554
No 253
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9e-35 Score=351.23 Aligned_cols=389 Identities=17% Similarity=0.134 Sum_probs=256.9
Q ss_pred CCCCCC-CCcCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccc
Q 041143 51 DDPCGP-PPWPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELE 117 (973)
Q Consensus 51 ~d~C~~-~~w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~ 117 (973)
.+||.. ..-..|.|++ .+++.|+|++|.+++..+..|.++++|++|+|++|.++++.| .|.++++|+
T Consensus 4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 356652 1124688864 478999999999999988899999999999999999999877 799999999
Q ss_pred eeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccC-CcchhccCCCCCCeEE
Q 041143 118 FAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVG-PLPDFLGTLPSLAALK 196 (973)
Q Consensus 118 ~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~ 196 (973)
+|+|++|+|+.+++..|.++++|++|+|++|++++. .+..++++++|++|+|++|.+++ .+|..|+++++|++|+
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~ 159 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL----ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCS----SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccc----cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence 999999999999999999999999999999999974 44779999999999999999986 5799999999999999
Q ss_pred ccCCcCcccCChhhhhhH-HH--HHhhcccCCCCCC--------------------------------------------
Q 041143 197 LSYNRLSGVIPASFGQSL-MQ--ILWLNDQDAGGMT-------------------------------------------- 229 (973)
Q Consensus 197 Ls~N~l~~~~p~~~~~~~-~~--~~~l~~~~~~~~~-------------------------------------------- 229 (973)
|++|++++..|..+.... ++ +..++...+....
T Consensus 160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 999999988777664311 11 0011111111000
Q ss_pred ------------------------------------Ccch----------------------hhcCCccccEEEccCCcc
Q 041143 230 ------------------------------------GPID----------------------VVAKMVSLTQLWLHGNQF 251 (973)
Q Consensus 230 ------------------------------------~~~~----------------------~~~~l~~L~~L~L~~N~l 251 (973)
+... .+..+++|+.|++++|.+
T Consensus 240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC
T ss_pred ccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC
Confidence 0000 122222333333333333
Q ss_pred -------------------------------------------ccC--CCccccCCCCCCEEeCcCCcccccCccccccc
Q 041143 252 -------------------------------------------TGS--IPEDIGALSSLKDLNLNRNQLVGLIPKSLANM 286 (973)
Q Consensus 252 -------------------------------------------~g~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 286 (973)
++. +|..+..+++|++|+|++|.+++ +|..+..+
T Consensus 320 ~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 320 KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence 322 13333333333333333333332 22333333
Q ss_pred -ccCeEEccCCcCcCCCC-CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccc
Q 041143 287 -ELDNLVLNNNLLMGPIP-KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLS 364 (973)
Q Consensus 287 -~L~~L~l~~N~l~g~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~ 364 (973)
+|+.|++++|.+.+..| ..+...-.+....+...... ...+.....+..+..+++..|.+..- .....
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~ 468 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDN---------TLSNV 468 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGG---------EECSC
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCc---------chHHh
Confidence 34444444444444333 11111111111111111000 00111112223344444444443320 11224
Q ss_pred cCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCCCC----ccc
Q 041143 365 CTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPEFH----DTV 440 (973)
Q Consensus 365 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~----~~~ 440 (973)
+..+++|+.|+|++|++++.+|..|+++++|+.|+|++|+|++.+|..|..+++|++|||++|+|+..++.+. ++.
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 5678899999999999999999999999999999999999999999999999999999999999996555443 366
Q ss_pred ceeecCCccccCCC
Q 041143 441 KLVIDGNPLLVGGI 454 (973)
Q Consensus 441 ~~~~~~N~~~c~~~ 454 (973)
.+++.+|||.|...
T Consensus 549 ~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 549 FFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSCCCCCSST
T ss_pred EEEccCCCcccCCc
Confidence 78999999999654
No 254
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-35 Score=359.86 Aligned_cols=241 Identities=21% Similarity=0.340 Sum_probs=195.1
Q ss_pred cCccccCcccccCccEEEEEEEC--CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCe-----
Q 041143 625 QNFAQENELGRGGFGTVYKGELE--DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNE----- 697 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~--~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 697 (973)
++|.+.+.||+|+||.||+|.+. +|+.||||++... ......+.+.+|++++++++|||||++++++...+.
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~-~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHS-GDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSS-CCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCcc-CCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 68999999999999999999875 5899999998653 345566789999999999999999999999987655
Q ss_pred EEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccc
Q 041143 698 RLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGL 777 (973)
Q Consensus 698 ~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGl 777 (973)
.|+||||+++++|.+++. ..++|.+++.|+.||+.||+||| +++||||||||+|||++.+ .+||+|||+
T Consensus 159 ~~lv~E~~~g~~L~~~~~-------~~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~ 227 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKG-------QKLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGA 227 (681)
T ss_dssp EEEEEECCCCEECC-----------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred eEEEEEeCCCCcHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEeccc
Confidence 699999999999987763 25899999999999999999999 7899999999999999986 899999999
Q ss_pred cccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHH
Q 041143 778 VKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKF 857 (973)
Q Consensus 778 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 857 (973)
++..... ....||++|+|||++.+. ++.++|||||||++|||++|..|+.......
T Consensus 228 a~~~~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~------------------ 283 (681)
T 2pzi_A 228 VSRINSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG------------------ 283 (681)
T ss_dssp CEETTCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS------------------
T ss_pred chhcccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc------------------
Confidence 9866442 345799999999988765 4889999999999999999998876422110
Q ss_pred HhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCC-HhHHHHHHHHhhh
Q 041143 858 KAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPD-MGHVVNVLSPLVE 908 (973)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs-~~~v~~~L~~~~~ 908 (973)
+............+.+++.+|++.||++||+ +.++.+.|..+..
T Consensus 284 -------~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 284 -------LPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp -------CCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred -------ccccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 0001111122245779999999999999995 6666666666543
No 255
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=5.4e-35 Score=316.97 Aligned_cols=233 Identities=12% Similarity=0.040 Sum_probs=184.8
Q ss_pred cCccccCcccccCccEEEEEEEC-CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV~ 702 (973)
++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+.+|+.++.+++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 57899999999999999999876 489999999976533 3455678999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCC
Q 041143 703 EYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAP 782 (973)
Q Consensus 703 e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~ 782 (973)
||+++++|.+++.. . ....++.+|+.|++.||+||| +++|+||||||+|||++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~------~-~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~------ 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADT------S-PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA------ 174 (286)
T ss_dssp ECCCEEEHHHHHTT------C-CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC------
T ss_pred EecCCCCHHHHHhc------C-CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc------
Confidence 99999999999843 1 345578899999999999999 8899999999999999999999998543
Q ss_pred CCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcC
Q 041143 783 DGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAID 862 (973)
Q Consensus 783 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (973)
|++ .++.++|||||||++|||++|+.||.......... .....+.
T Consensus 175 ---------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~-------------~~~~~~~ 219 (286)
T 3uqc_A 175 ---------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLA-------------PAERDTA 219 (286)
T ss_dssp ---------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSE-------------ECCBCTT
T ss_pred ---------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhH-------------HHHHHhc
Confidence 333 36889999999999999999999998765321100 0000000
Q ss_pred ccccC-CcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 863 PALEV-NEETFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 863 ~~l~~-~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
..... ..........+.+++.+||+.||++| |+.|+++.|+.+...
T Consensus 220 ~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 220 GQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp SCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred cCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 00000 00001122457899999999999999 999999999988653
No 256
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-35 Score=349.20 Aligned_cols=369 Identities=18% Similarity=0.184 Sum_probs=245.5
Q ss_pred cCeEEeeC-------------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCC
Q 041143 59 WPHVFCSG-------------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFN 124 (973)
Q Consensus 59 w~gv~C~~-------------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N 124 (973)
|.|+ |+. ..+++|+|++|.+++..|.+|+++++|++|+|++|++++.+| .|.++++|++|+|++|
T Consensus 6 ~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 6 ASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 9998 864 279999999999999999999999999999999999999887 7999999999999999
Q ss_pred CCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcc-hhccCCCCCCeEEccCCcCc
Q 041143 125 EFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLP-DFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 125 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 203 (973)
+++.+++..|.++++|++|+|++|++++. .+|..+.++++|++|+|++|.+.+.+| ..|.++++|++|+|++|+++
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred ccCccCHHHhccCCCCcEEECCCCccccc---chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999999999999999999999999864 367789999999999999998544554 68999999999999999999
Q ss_pred ccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCc--------------------------------------------
Q 041143 204 GVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMV-------------------------------------------- 239 (973)
Q Consensus 204 ~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-------------------------------------------- 239 (973)
+.+|..+... ..+..|....+.....+...+..++
T Consensus 162 ~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 162 NYQSQSLKSI-RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EECTTTTTTC-SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccChhhhhcc-ccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 8888766431 1111111111111111111112222
Q ss_pred ----------------------------------------------------------------------cccEEEccCC
Q 041143 240 ----------------------------------------------------------------------SLTQLWLHGN 249 (973)
Q Consensus 240 ----------------------------------------------------------------------~L~~L~L~~N 249 (973)
+|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 2333333333
Q ss_pred ccccCCCccc-cCCCCCCEEeCcCCcccccCcc---ccccc-ccCeEEccCCcCcCCCC--CCCCCCcccccCcccCCCC
Q 041143 250 QFTGSIPEDI-GALSSLKDLNLNRNQLVGLIPK---SLANM-ELDNLVLNNNLLMGPIP--KFKAGNVTYDSNSFCQSEP 322 (973)
Q Consensus 250 ~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l-~L~~L~l~~N~l~g~~p--~~~~~~~~~~~~~~~~~~~ 322 (973)
+++ .+|..+ ..+++|++|+|++|++++.+|. .+..+ +|+.|++++|+|++..+ ..+...-.+...++...
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-- 397 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-- 397 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC--
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC--
Confidence 333 333333 2355555555555555544332 13333 45555555555543211 00000000000011000
Q ss_pred CcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccC
Q 041143 323 GIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGK 402 (973)
Q Consensus 323 ~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 402 (973)
.+...+.....+..+..++++.|.+..+++. ..++|++|+|++|++++.+ ..+++|++|+|++
T Consensus 398 ~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISR 460 (549)
T ss_dssp CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCS
T ss_pred CCccCChhhcccccccEEECCCCCcccccch-------------hcCCceEEECCCCChhhhc----ccCChhcEEECCC
Confidence 0001111112223444455555555444322 1247888889988888754 5789999999999
Q ss_pred CccccccCccccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCccccCCC
Q 041143 403 NSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 403 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~~ 454 (973)
|+|+ .+|. ...+++|++|||++|+|++.+|. +.++..+++.+|+|.|...
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9998 7887 57899999999999999999885 3456679999999998743
No 257
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=5.3e-35 Score=334.42 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=182.3
Q ss_pred cCccccCcccccCccEEEEEEE-CCCCEEEEEEeecC-CCChHHHHHHHHHHHHHHhcCC-Cceee--------------
Q 041143 625 QNFAQENELGRGGFGTVYKGEL-EDGTKIAVKRMEAG-VTTTKALDEFQSEIAVLSKVRH-RHLVS-------------- 687 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~-~~~~~~~~~~~~E~~~l~~l~h-~niv~-------------- 687 (973)
..|...+.||+|+||.||+|++ .+|+.||||+++.. .......+.+.+|+.+++.++| +|...
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 4577788999999999999985 46999999998733 2222335679999999999987 32111
Q ss_pred -e------eeEEEe-----CCeEEEEEEecCCCCHHHHHHhhh--hccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCee
Q 041143 688 -L------LGYSIE-----GNERLLVYEYMPHGALSRHLFRWE--KLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFI 753 (973)
Q Consensus 688 -l------~~~~~~-----~~~~~lV~e~~~~g~L~~~l~~~~--~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~iv 753 (973)
+ ..++.. ....+++|+++ +|+|.+++.... ......+++..++.|+.||++||+||| +++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 1 111111 12356777765 789999886432 122356889999999999999999999 88999
Q ss_pred eccCCCCcEEECCCCCEEEeeccccccCCCCCcceecccccccCccccccc----------ccCcCCCchhHHhHHHHHH
Q 041143 754 HRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYA----------VMGKITTKADVFSYGVVLM 823 (973)
Q Consensus 754 H~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S~Gvvl~ 823 (973)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ ....++.++|||||||++|
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ 308 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY 308 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999865432 445678 999999999 5566889999999999999
Q ss_pred HHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHHHHHHHHHhhccCCCCCCCHhHHHH
Q 041143 824 ELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISIVAELAGHCTAREPYHRPDMGHVVN 901 (973)
Q Consensus 824 elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~ 901 (973)
||++|+.||......+. ....+..... ....+.+++.+||+.||++||++.|+++
T Consensus 309 elltg~~Pf~~~~~~~~----------------~~~~~~~~~~-------~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 309 WIWCADLPNTDDAALGG----------------SEWIFRSCKN-------IPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHSSCCCCTTGGGSC----------------SGGGGSSCCC-------CCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHCCCCCCCcchhhh----------------HHHHHhhccc-------CCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 99999999976542211 1111111111 1245889999999999999999888865
No 258
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=5.1e-34 Score=312.20 Aligned_cols=236 Identities=20% Similarity=0.249 Sum_probs=181.3
Q ss_pred hcCcccc-CcccccCccEEEEEEE-CCCCEEEEEEeecCCCChHHHHHHHHHHHHH-HhcCCCceeeeeeEEEe----CC
Q 041143 624 TQNFAQE-NELGRGGFGTVYKGEL-EDGTKIAVKRMEAGVTTTKALDEFQSEIAVL-SKVRHRHLVSLLGYSIE----GN 696 (973)
Q Consensus 624 ~~~~~~~-~~lG~G~fg~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~ 696 (973)
.++|... +.||+|+||.||+|.. .+++.||||+++.. ..+.+|++++ +..+||||+++++++.. ..
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-------~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-------PKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-------HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-------HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 3567776 7899999999999987 46899999998642 3567899888 55689999999999987 66
Q ss_pred eEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECC---CCCEEEe
Q 041143 697 ERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDD---DYRAKVS 773 (973)
Q Consensus 697 ~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~---~~~~kl~ 773 (973)
..++||||+++|+|.+++... ....+++.++..++.|++.||+||| +++|+||||||+||+++. ++.+||+
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~ 162 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDR---GDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLT 162 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHC---TTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEEC
T ss_pred eEEEEEeecCCCcHHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEe
Confidence 789999999999999999762 2246899999999999999999999 789999999999999998 7899999
Q ss_pred eccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCCCCChhhHHHHHHHHHHHhhc
Q 041143 774 DFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALDEERPEESRYLAEWFWRIKSS 853 (973)
Q Consensus 774 DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 853 (973)
|||+++... +..++.++|||||||++|||++|+.||.........
T Consensus 163 Dfg~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~------------ 207 (299)
T 3m2w_A 163 DFGFAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS------------ 207 (299)
T ss_dssp CCTTCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------------
T ss_pred ccccccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh------------
Confidence 999986432 235678999999999999999999999765421100
Q ss_pred hhHHHhhcCccccCCcc-cHHHHHHHHHHHHHhhccCCCCCCCHhHHHHHHHHhhhh
Q 041143 854 KEKFKAAIDPALEVNEE-TFESISIVAELAGHCTAREPYHRPDMGHVVNVLSPLVEK 909 (973)
Q Consensus 854 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~cl~~dP~~RPs~~~v~~~L~~~~~~ 909 (973)
................. .......+.+++.+|++.||++||++.|+++ ++++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~--hp~~~~ 262 (299)
T 3m2w_A 208 PGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN--HPWIMQ 262 (299)
T ss_dssp CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT--SHHHHT
T ss_pred HHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc--Chhhcc
Confidence 00000000011110000 0112345889999999999999999999998 666654
No 259
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-34 Score=345.54 Aligned_cols=381 Identities=16% Similarity=0.156 Sum_probs=236.2
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.++++|+|++|.+++..|.+|+++++|++|+|++|.+++..| .|.++++|++|+|++|+|+.+++..|.++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 568888888888888778888888888888888888888766 6788888888888888888887777888888888888
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCC--eEEccCCcCcccCChhhhhh----------
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLA--ALKLSYNRLSGVIPASFGQS---------- 213 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~--~L~Ls~N~l~~~~p~~~~~~---------- 213 (973)
++|++++. .+| .+..+++|++|+|++|.+++..+..|+.+++|+ .|++++|++++..|..+...
T Consensus 137 ~~n~l~~~---~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 137 GSNHISSI---KLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp CSSCCCCC---CCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCccccc---Ccc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 88888763 123 333477777777777777766666777777777 67777777665555433210
Q ss_pred ----------------------------------------------------------------HHHHHhhcccCCCCCC
Q 041143 214 ----------------------------------------------------------------LMQILWLNDQDAGGMT 229 (973)
Q Consensus 214 ----------------------------------------------------------------~~~~~~l~~~~~~~~~ 229 (973)
+..+..|+...+.. .
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~ 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-S
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-C
Confidence 01111122222222 2
Q ss_pred CcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccc-cccc-c--------------------
Q 041143 230 GPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKS-LANM-E-------------------- 287 (973)
Q Consensus 230 ~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l-~-------------------- 287 (973)
..+..+.++++|++|+|++|.+++..|..+..+++|++|++++|.+.+.+|.. +..+ +
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 22334555566666666666665544555555555555555555544333322 3333 3
Q ss_pred ------cCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCC----
Q 041143 288 ------LDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQ---- 357 (973)
Q Consensus 288 ------L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~---- 357 (973)
|+.|++++|.+.+..|..+...-.+....+.+..............+..+..+++..|.+...+......
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 4444444444433333322211111111111111000001111222344555555555544332211000
Q ss_pred -------CCcc------ccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeC
Q 041143 358 -------GPWL------GLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDV 424 (973)
Q Consensus 358 -------~~~~------~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~L 424 (973)
..+. ...+..+++|++|+|++|++++.+|..|+++++|+.|+|++|+|++..|..|.++++| +|+|
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 0000 1235667889999999999999989999999999999999999999999999999999 9999
Q ss_pred CCCcCCCCCCC----CCcccceeecCCccccCC
Q 041143 425 SDNNIKPPLPE----FHDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 425 s~N~l~g~~p~----~~~~~~~~~~~N~~~c~~ 453 (973)
++|++++.+|. +.++..+++.+|||.|..
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 99999988875 356677999999999863
No 260
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6e-34 Score=344.01 Aligned_cols=379 Identities=16% Similarity=0.111 Sum_probs=255.7
Q ss_pred cCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCC
Q 041143 59 WPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEF 126 (973)
Q Consensus 59 w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l 126 (973)
+..|.|.. ..++.|+|++|.|++..|.+|+++++|++|+|++|.+++..| .|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 56788864 368999999999999999999999999999999999999877 799999999999999999
Q ss_pred CCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccC
Q 041143 127 DTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVI 206 (973)
Q Consensus 127 ~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (973)
+.+++..|.++++|++|+|++|++++. .|..+.++++|++|+|++|++++.....+..+++|++|+|++|++++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSI----DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCG----GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred cccChhhhcccccccEeeccccCcccC----CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 999999999999999999999999974 4677899999999999999999855455556999999999999999777
Q ss_pred Chhhhhh-HHHHHhhcccCCCCCCCcchhh-------------------------------------------------c
Q 041143 207 PASFGQS-LMQILWLNDQDAGGMTGPIDVV-------------------------------------------------A 236 (973)
Q Consensus 207 p~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-------------------------------------------------~ 236 (973)
|..+... .++.+.++...+.....++..| .
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 7766541 1221123333332222111111 1
Q ss_pred CCc--cccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccc
Q 041143 237 KMV--SLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYD 313 (973)
Q Consensus 237 ~l~--~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~ 313 (973)
++. +|+.|++++|.+++..+..|..+++|++|+|++|+++ .+|..+..+ +|++|++++|.+.+..|..+...-.+.
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred hhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 111 4555666666666555555666666666666666665 445555554 566666666665554443222111111
Q ss_pred cCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCcc
Q 041143 314 SNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLD 393 (973)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 393 (973)
...+.+..............+..+..++++.|.+..... ....+..+++|++|+|++|++.+..|..|.+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC--------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE--------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccC--------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence 222222111111111222234455566666665544320 012345667777888888877777777777777
Q ss_pred ccceEEccCCccccccCcc-ccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCccc
Q 041143 394 SLIEIRLGKNSISGTVPNN-FTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLL 450 (973)
Q Consensus 394 ~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~ 450 (973)
+|+.|+|++|++++..|.. |..+++|++|+|++|.+++.+|. +.++..+++.+|++.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 8888888888777666544 77777788888888877776654 345566777777653
No 261
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-33 Score=349.18 Aligned_cols=324 Identities=27% Similarity=0.314 Sum_probs=190.1
Q ss_pred eEEEEEecccCCcccCCcCccc--ccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEE
Q 041143 68 RVTQIQVQNLGLKGPLPQNFNQ--LTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLA 144 (973)
Q Consensus 68 ~v~~L~L~~~~l~g~~~~~~~~--l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 144 (973)
.++.|+|++|.++|.+|+.+.. +++|++|+|++|.+++.+| .|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 5666677777776666666655 6666777777777666555 566666677777777766666666666666777777
Q ss_pred cccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccC
Q 041143 145 LDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQD 224 (973)
Q Consensus 145 Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~ 224 (973)
|++|++++. +|..+..+++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+.. +.++..|+...
T Consensus 449 L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~ 523 (768)
T 3rgz_A 449 LWLNMLEGE----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSN 523 (768)
T ss_dssp CCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCS
T ss_pred CCCCcccCc----CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCC
Confidence 777766653 6666666666777777777776666666666777777777777766666665542 11111111112
Q ss_pred CCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCC--------------------------------------
Q 041143 225 AGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLK-------------------------------------- 266 (973)
Q Consensus 225 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~-------------------------------------- 266 (973)
+......+..+.++++|+.|+|++|+++|.+|..+..+..+.
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 211111222233344444444444444444443332211100
Q ss_pred --------EEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhc
Q 041143 267 --------DLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFL 337 (973)
Q Consensus 267 --------~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 337 (973)
.++++.|.+.|.+|..+..+ +|+.|+|++|+++|.+|..+ ..+..+
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l-------------------------~~l~~L 658 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-------------------------GSMPYL 658 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG-------------------------GGCTTC
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH-------------------------hccccC
Confidence 00111111112222222222 35555555555555555421 112234
Q ss_pred cCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcC
Q 041143 338 GGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELK 417 (973)
Q Consensus 338 ~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~ 417 (973)
..++++.|.+... .+..+..+++|++|||++|+++|.+|..+++++.|++|+|++|+|+|.||.. ..+.
T Consensus 659 ~~L~Ls~N~l~g~----------ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~ 727 (768)
T 3rgz_A 659 FILNLGHNDISGS----------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFE 727 (768)
T ss_dssp CEEECCSSCCCSC----------CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGG
T ss_pred CEEeCcCCccCCC----------CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhc
Confidence 4445555444321 1114677889999999999999999999999999999999999999999975 4555
Q ss_pred CCCeeeCCCCc-CCCC
Q 041143 418 SLRLLDVSDNN-IKPP 432 (973)
Q Consensus 418 ~L~~L~Ls~N~-l~g~ 432 (973)
++..+.+.+|. |.|.
T Consensus 728 ~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 728 TFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GSCGGGGCSCTEEEST
T ss_pred cCCHHHhcCCchhcCC
Confidence 66666777775 5553
No 262
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-33 Score=339.46 Aligned_cols=390 Identities=19% Similarity=0.135 Sum_probs=267.6
Q ss_pred CeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCC
Q 041143 60 PHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFD 127 (973)
Q Consensus 60 ~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~ 127 (973)
..|.|.. ..++.|+|++|.|++..+.+|.++++|++|||++|+|+++++ +|.+|++|++|+|++|+|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3578964 268999999999998888899999999999999999999888 7999999999999999999
Q ss_pred CCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccC-CcchhccCCCCCCeEEccCCcCcccC
Q 041143 128 TIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVG-PLPDFLGTLPSLAALKLSYNRLSGVI 206 (973)
Q Consensus 128 ~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~ 206 (973)
.+++.+|.++++|++|+|++|+++++ .+..|+++++|++|+|++|.|++ .+|..++.+++|++|+|++|+|++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCC----ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99999999999999999999999974 44578999999999999999986 46889999999999999999999877
Q ss_pred ChhhhhhH-HHH----HhhcccCCC---------------------------------------------------CCC-
Q 041143 207 PASFGQSL-MQI----LWLNDQDAG---------------------------------------------------GMT- 229 (973)
Q Consensus 207 p~~~~~~~-~~~----~~l~~~~~~---------------------------------------------------~~~- 229 (973)
+..+.... .+. +.+..+... ...
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 76653210 000 000000000 000
Q ss_pred -------------------------------------------------CcchhhcCCccccEEEccCCccccCCCc---
Q 041143 230 -------------------------------------------------GPIDVVAKMVSLTQLWLHGNQFTGSIPE--- 257 (973)
Q Consensus 230 -------------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~g~~p~--- 257 (973)
.....+....+|+.|++.+|.+.+..+.
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccch
Confidence 0001233345567777777766533222
Q ss_pred ----------------cccCCCCCCEEeCcCCccccc--Cccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCccc
Q 041143 258 ----------------DIGALSSLKDLNLNRNQLVGL--IPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFC 318 (973)
Q Consensus 258 ----------------~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~ 318 (973)
.+..+++|+.|++++|.+... .+..+... +|+.|++..|.+.+..+.+ .....+....+.
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~-~~l~~L~~l~l~ 428 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQ 428 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC-TTCTTCCEEECT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc-cccccccchhhh
Confidence 223567888999998888643 23333222 5666666666554332221 111111111111
Q ss_pred CCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCC---------------CCCCccccccCCCCcccEEecCCCcCCC
Q 041143 319 QSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDP---------------CQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~---------------~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
...............+..+..++++.|.+........ ....+....+..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 0000000000111112222223333333222211100 0001122346778899999999999999
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCCC-----CcccceeecCCccccCCC
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPEF-----HDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-----~~~~~~~~~~N~~~c~~~ 454 (973)
.+|..|+++++|++|+|++|+|++..|..|..+++|++|||++|+|++.+|.. .++..+++.+|||.|...
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999999988999999999999999999999998862 346679999999999753
No 263
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=335.14 Aligned_cols=342 Identities=19% Similarity=0.213 Sum_probs=240.7
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|.+++..+.+|.++++|++|+|++|+|++..| .|.++++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEEC
Confidence 468888999999988777888999999999999999988766 688889999999999999888876 7889999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCC--CeEEccCCcC--cccCChhhhhhHHHHHhhc
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSL--AALKLSYNRL--SGVIPASFGQSLMQILWLN 221 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~Ls~N~l--~~~~p~~~~~~~~~~~~l~ 221 (973)
++|++++. .+|..|+++++|++|+|++|+|++. .+..+++| ++|+|++|++ ++..|..+.....+.+.+.
T Consensus 129 s~N~l~~l---~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 129 SFNDFDVL---PVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp CSSCCSBC---CCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred CCCCcccc---CchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 99988864 3567888899999999999988853 34555555 8899999888 7777766543110111111
Q ss_pred ccCCCCCCC-c----------------------------chh---------------------------hcCCccccEEE
Q 041143 222 DQDAGGMTG-P----------------------------IDV---------------------------VAKMVSLTQLW 245 (973)
Q Consensus 222 ~~~~~~~~~-~----------------------------~~~---------------------------~~~l~~L~~L~ 245 (973)
...+..... . ... ....++|++|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~ 282 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEE
Confidence 111110000 0 000 01123677777
Q ss_pred ccCCccccCCCccc-----------------------------------------------------cCCCCCCEEeCcC
Q 041143 246 LHGNQFTGSIPEDI-----------------------------------------------------GALSSLKDLNLNR 272 (973)
Q Consensus 246 L~~N~l~g~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~ 272 (973)
+++|.++|.+|..+ ..+++|++|+|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCC
Confidence 77777777777665 3445555555555
Q ss_pred CcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCC-C
Q 041143 273 NQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQ-W 350 (973)
Q Consensus 273 N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~-~ 350 (973)
|++++.+|..+..+ +|+.|++++|++++..+ .+.....+..+..++++.|.+.. +
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------------------~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-----------------------VALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-----------------------HHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCccc-----------------------chhhhcCCCCCCEEECCCCcCCCcc
Confidence 55555555555554 45555555555543110 00111234456777788887766 4
Q ss_pred CCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCC
Q 041143 351 PGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIK 430 (973)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 430 (973)
+.. .+..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|+
T Consensus 420 ~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 420 YDR----------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp SSC----------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred Chh----------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 432 345678999999999999998887665 79999999999999 89988889999999999999999
Q ss_pred CCCCC-C---CcccceeecCCccccCC
Q 041143 431 PPLPE-F---HDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 431 g~~p~-~---~~~~~~~~~~N~~~c~~ 453 (973)
+.++. + .++..+++.+|||.|..
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 76654 3 45567899999999964
No 264
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=336.72 Aligned_cols=378 Identities=17% Similarity=0.184 Sum_probs=250.6
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|++++..+.+|.++++|++|+|++|++++..+ .|.++++|++|+|++|+++.+++..|.++++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 368889999999998888889999999999999999998877 6888999999999999999999889999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccC-CcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHH----Hhh
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVG-PLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQI----LWL 220 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~----~~l 220 (973)
++|++++. .+..++++++|++|+|++|.+++ .+|..|+++++|++|+|++|++++..|..+.. +.++ ..+
T Consensus 108 ~~n~l~~l----~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L 182 (570)
T 2z63_A 108 VETNLASL----ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSL 182 (570)
T ss_dssp TTSCCCCS----TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEE
T ss_pred cccccccC----CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhc
Confidence 99998863 22368889999999999999886 46888999999999999999988766665543 1111 111
Q ss_pred cccCCCCC------------------------------------------------------------------------
Q 041143 221 NDQDAGGM------------------------------------------------------------------------ 228 (973)
Q Consensus 221 ~~~~~~~~------------------------------------------------------------------------ 228 (973)
+...+...
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 11111100
Q ss_pred ---------CCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccc-c---------------
Q 041143 229 ---------TGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKS-L--------------- 283 (973)
Q Consensus 229 ---------~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~--------------- 283 (973)
......+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+.. +|.. +
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCcccccccCEEeCcCCcccc
Confidence 111234556677888888887777 566666555 55555555555542 2211 1
Q ss_pred ----ccc-ccCeEEccCCcCcCCC--CCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCC-C
Q 041143 284 ----ANM-ELDNLVLNNNLLMGPI--PKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGND-P 355 (973)
Q Consensus 284 ----~~l-~L~~L~l~~N~l~g~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~-~ 355 (973)
..+ +|+.|++++|.+++.. |..+...-.+....+.+. .+...+.....+..+..+++..|.+...+... .
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC--SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC--ccccccccccccCCCCEEEccCCccccccchhhh
Confidence 122 4556666666555332 111000000000011000 00000000111223333344443333221100 0
Q ss_pred -------------CC-CCccccccCCCCcccEEecCCCcCC-CccchhhhCccccceEEccCCccccccCccccCcCCCC
Q 041143 356 -------------CQ-GPWLGLSCTSNSKVSIINLPRHNLT-GTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLR 420 (973)
Q Consensus 356 -------------~~-~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 420 (973)
+. .......+..+++|++|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..|..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 00 0011123566889999999999998 68899999999999999999999988899999999999
Q ss_pred eeeCCCCcCCCCCCC----CCcccceeecCCccccCCC
Q 041143 421 LLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 421 ~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~~ 454 (973)
+|+|++|+|++.+|. +.++..+++.+|++.|...
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999999999998775 3456678999999998643
No 265
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-33 Score=338.92 Aligned_cols=387 Identities=18% Similarity=0.142 Sum_probs=259.9
Q ss_pred CcCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCC
Q 041143 58 PWPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNE 125 (973)
Q Consensus 58 ~w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~ 125 (973)
.+..|.|+. .+++.|+|++|++++..+..|+++++|++|+|++|.+++..| .|.++++|++|+|++|+
T Consensus 5 ~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp BSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred ECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 366677764 378999999999998888889999999999999999999887 58899999999999999
Q ss_pred CCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc
Q 041143 126 FDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV 205 (973)
Q Consensus 126 l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (973)
|+.+++..|.++++|++|+|++|++++. .|..|.++++|++|+|++|.+++..|..++++++|++|+|++|++++.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKI----KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCC----CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred cCccChhhhccCCCCCEEECCCCccCcc----ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 9999999999999999999999999874 457899999999999999999999999999999999999999999977
Q ss_pred CChhhhhh-HHHHHhhcccCCCCCCCcchhhcCC---------------------------ccccEEEccCCccccCCCc
Q 041143 206 IPASFGQS-LMQILWLNDQDAGGMTGPIDVVAKM---------------------------VSLTQLWLHGNQFTGSIPE 257 (973)
Q Consensus 206 ~p~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l---------------------------~~L~~L~L~~N~l~g~~p~ 257 (973)
.+..+... ...+..|+...+......+..|..+ ++|+.|+|++|.+++..|.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 77665321 1233344444443333333333332 5677888888888888888
Q ss_pred cccCCCC--CCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCc----ccCC--
Q 041143 258 DIGALSS--LKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGI----ECAP-- 328 (973)
Q Consensus 258 ~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~~-- 328 (973)
.|..++. |+.|+|++|++++..|..|..+ +|+.|++++|.+.+..|..+.....+....+....... ...+
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 8887754 8888888888888888888877 78888888888887777654433322222222111000 0000
Q ss_pred --cchhhhhhccCCCCCCcccCCCCCCCCCCCC-ccccc---------------c--CCCCcccEEecCCCcCCCccchh
Q 041143 329 --DVNVLLDFLGGVNYPVNLVSQWPGNDPCQGP-WLGLS---------------C--TSNSKVSIINLPRHNLTGTLSPS 388 (973)
Q Consensus 329 --~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~-~~~~~---------------~--~~~~~L~~L~Ls~N~l~~~~p~~ 388 (973)
.....+..+..+++..|.+...+.......+ ...+. + ...++|+.|+|++|++++..|..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 0122344566666666666655432111000 00000 0 01134555555555555555555
Q ss_pred hhCccccceEEccCCccccccC-ccccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCc
Q 041143 389 IANLDSLIEIRLGKNSISGTVP-NNFTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNP 448 (973)
Q Consensus 389 ~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~ 448 (973)
|..+++|+.|+|++|++++.+| ..|..+++|++|+|++|++++..+. +..+..+.+.+|.
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 5555555555555555555444 3455555555555555555544332 2333444454443
No 266
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=1.2e-34 Score=322.74 Aligned_cols=246 Identities=16% Similarity=0.187 Sum_probs=184.3
Q ss_pred hcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCC------ChHHHHHHHHHHHHHHhcC---------CCceeee
Q 041143 624 TQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVT------TTKALDEFQSEIAVLSKVR---------HRHLVSL 688 (973)
Q Consensus 624 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~------~~~~~~~~~~E~~~l~~l~---------h~niv~l 688 (973)
.++|...+.||+|+||.||+|+. +|+.||||+++.... .....+.+.+|+++++.++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 36788999999999999999988 589999999975422 2223467889999999886 7777777
Q ss_pred eeEEE-----------------e-------------CCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHH
Q 041143 689 LGYSI-----------------E-------------GNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVA 738 (973)
Q Consensus 689 ~~~~~-----------------~-------------~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia 738 (973)
++++. + .+..++||||+++|++.+.+.+ ..+++.++..++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~------~~~~~~~~~~i~~qi~ 171 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT------KLSSLATAKSILHQLT 171 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT------TCCCHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh------cCCCHHHHHHHHHHHH
Confidence 66543 2 6789999999999977665532 4579999999999999
Q ss_pred HHHHHHHhhccCCeeeccCCCCcEEECCCC--------------------CEEEeeccccccCCCCCcceecccccccCc
Q 041143 739 RGMEYLHCLARQTFIHRDLKSSNILLDDDY--------------------RAKVSDFGLVKLAPDGEKSVVTRLAGTFGY 798 (973)
Q Consensus 739 ~gl~~LH~~~~~~ivH~Dikp~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y 798 (973)
.||+|||+ +++|+||||||+|||++.++ .+||+|||+|+..... ..+||+.|
T Consensus 172 ~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y 243 (336)
T 2vuw_A 172 ASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVS 243 (336)
T ss_dssp HHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCT
T ss_pred HHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecc
Confidence 99999992 35899999999999999887 8999999999865432 34799999
Q ss_pred ccccccccCcCCCchhHHhHHHH-HHHHHhCCCCCCCCChhhHHHHHHHHHHHhhchhHHHhhcCccccCCcccHHHHHH
Q 041143 799 LAPEYAVMGKITTKADVFSYGVV-LMELLTGLAALDEERPEESRYLAEWFWRIKSSKEKFKAAIDPALEVNEETFESISI 877 (973)
Q Consensus 799 ~aPE~~~~~~~~~~~Dv~S~Gvv-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 877 (973)
+|||++.+.. +.++||||+|++ .+++++|..||... .|..... .........+..............
T Consensus 244 ~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~ 311 (336)
T 2vuw_A 244 MDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV---------LWLHYLT--DKMLKQMTFKTKCNTPAMKQIKRK 311 (336)
T ss_dssp TCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH---------HHHHHHH--HHHHHTCCCSSCCCSHHHHHHHHH
T ss_pred cChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch---------hhhhHHH--HhhhhhhccCcccchhhhhhcCHH
Confidence 9999988666 889999998777 78899998887321 1111111 001111111111111223345567
Q ss_pred HHHHHHHhhccCCCCCCCHhHHH-H
Q 041143 878 VAELAGHCTAREPYHRPDMGHVV-N 901 (973)
Q Consensus 878 ~~~l~~~cl~~dP~~RPs~~~v~-~ 901 (973)
+.+++.+||+.| |++|++ +
T Consensus 312 ~~dli~~~L~~d-----sa~e~l~~ 331 (336)
T 2vuw_A 312 IQEFHRTMLNFS-----SATDLLCQ 331 (336)
T ss_dssp HHHHHHHGGGSS-----SHHHHHHH
T ss_pred HHHHHHHHhccC-----CHHHHHhc
Confidence 889999999976 898888 5
No 267
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=331.46 Aligned_cols=363 Identities=17% Similarity=0.179 Sum_probs=259.6
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|.+++..|..|.++++|++|+|++|+|++..| .|.++++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEec
Confidence 578999999999998877889999999999999999999876 789999999999999999988876 7999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCC--CeEEccCCcC--cccCChhhhhhHHHHHhhc
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSL--AALKLSYNRL--SGVIPASFGQSLMQILWLN 221 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L--~~L~Ls~N~l--~~~~p~~~~~~~~~~~~l~ 221 (973)
++|++++. .+|..|+++++|++|+|++|+|++ ..+..+++| ++|+|++|++ .+..|..+.....+.+.+.
T Consensus 98 ~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 98 SFNAFDAL---PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CSSCCSSC---CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred cCCccccc---cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 99999874 478899999999999999999985 457777888 9999999999 7777776654111111111
Q ss_pred ccCCCCCC-------------------------------CcchhhcC---------------------------CccccE
Q 041143 222 DQDAGGMT-------------------------------GPIDVVAK---------------------------MVSLTQ 243 (973)
Q Consensus 222 ~~~~~~~~-------------------------------~~~~~~~~---------------------------l~~L~~ 243 (973)
...+.... +....+.. .++|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 11111000 00001111 236777
Q ss_pred EEccCCccccCCCccc-----cCCCCCCEEeCcCCcccccCc-cc-------------------------cccc-ccCeE
Q 041143 244 LWLHGNQFTGSIPEDI-----GALSSLKDLNLNRNQLVGLIP-KS-------------------------LANM-ELDNL 291 (973)
Q Consensus 244 L~L~~N~l~g~~p~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~-------------------------~~~l-~L~~L 291 (973)
|+|++|+++|.+|..+ ..+++|+.+++++|.+ .+| .. +..+ +|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEE
Confidence 7778888887788777 5555555555555554 222 00 1233 57778
Q ss_pred EccCCcCcCCCCCCCCCCcccccCcccCCCCCc-ccCCcchhhhhhccCCCCCCcccCC-CCCCCCCCCCccccccCCCC
Q 041143 292 VLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGI-ECAPDVNVLLDFLGGVNYPVNLVSQ-WPGNDPCQGPWLGLSCTSNS 369 (973)
Q Consensus 292 ~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~ 369 (973)
++++|.+++.+|..+...-.+....+..+.... ...+.....+..+..++++.|.+.. ++.. .+..++
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----------~~~~l~ 399 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----------DCSWTK 399 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----------SCCCCT
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc----------hhccCc
Confidence 888888777666654333333333333222111 0111122335567778888887766 4422 345678
Q ss_pred cccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC-C---Ccccceeec
Q 041143 370 KVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE-F---HDTVKLVID 445 (973)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~---~~~~~~~~~ 445 (973)
+|+.|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++.++. + .++..+++.
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 999999999999998887765 79999999999999 8999888999999999999999976554 3 456779999
Q ss_pred CCccccCC
Q 041143 446 GNPLLVGG 453 (973)
Q Consensus 446 ~N~~~c~~ 453 (973)
+||+.|..
T Consensus 477 ~N~~~c~c 484 (520)
T 2z7x_B 477 TNPWDCSC 484 (520)
T ss_dssp SSCBCCCH
T ss_pred CCCCcccC
Confidence 99999964
No 268
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-32 Score=333.21 Aligned_cols=385 Identities=20% Similarity=0.180 Sum_probs=295.1
Q ss_pred CeEEEEEecccCCcccCCcCcccccc--cceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEE
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTK--LYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVL 143 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~--L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 143 (973)
..++.|+|++|.+++..|..|.+++. |++|+|++|.+++.++ .|.++++|++|+|++|++..+++..|.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 46889999999999999999999876 9999999999999877 68999999999999999999999999999999999
Q ss_pred EcccCCCCCccC-CCCCc----ccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc-CCh-hhhhh-HH
Q 041143 144 ALDYNPFNKTFG-WSIPD----SLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV-IPA-SFGQS-LM 215 (973)
Q Consensus 144 ~Ls~N~l~~~~~-~~ip~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~-~~~~~-~~ 215 (973)
+|++|...+.+. ..+|. .|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++. ++. .|... ..
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 999886654211 02343 778899999999999999998899999999999999999986532 222 22110 11
Q ss_pred HHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCC-ccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEc
Q 041143 216 QILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIP-EDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVL 293 (973)
Q Consensus 216 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l 293 (973)
.+..|+...+......+..|.++++|+.|+|++|.+++.+| ..|..+++|++|+|++|++.+..+..|..+ +|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 33344455555555566788889999999999999987776 678889999999999999988888888777 7888888
Q ss_pred cCCcCc--CCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcc
Q 041143 294 NNNLLM--GPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKV 371 (973)
Q Consensus 294 ~~N~l~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L 371 (973)
++|.+. +.+|..+...-.+...++...... ...+.....+..+..++++.|.+..++....... ....+..+++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~~~~~~~l~~L 538 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGG--PIYFLKGLSHL 538 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS--CCCTTTTCTTC
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCC--cchhhcCCCCC
Confidence 888886 456654433323333333322211 1122233445677888888888776533211000 01135678999
Q ss_pred cEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC-----CCcccceeecC
Q 041143 372 SIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE-----FHDTVKLVIDG 446 (973)
Q Consensus 372 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-----~~~~~~~~~~~ 446 (973)
++|+|++|++....+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++.+|. +.++..+++.+
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 9999999999966666799999999999999999977777789999999999999999998874 46678899999
Q ss_pred CccccCCC
Q 041143 447 NPLLVGGI 454 (973)
Q Consensus 447 N~~~c~~~ 454 (973)
|||.|...
T Consensus 619 N~~~c~c~ 626 (680)
T 1ziw_A 619 NPFDCTCE 626 (680)
T ss_dssp CCCCBCCC
T ss_pred CCcccCCc
Confidence 99999754
No 269
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-33 Score=323.20 Aligned_cols=310 Identities=20% Similarity=0.223 Sum_probs=246.3
Q ss_pred CCeEEEEEecccCCcccC-CcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCC--CCccccCCCCCcc
Q 041143 66 GNRVTQIQVQNLGLKGPL-PQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDT--IPSDFFDGLSSVR 141 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~--i~~~~f~~l~~L~ 141 (973)
..+++.|+|++|.+.+.+ +..|.++++|++|+|++|.+++..| .|.++++|++|+|++|+++. +....|..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 357899999999998666 4568999999999999999998866 78999999999999999987 3445588999999
Q ss_pred EEEcccCCCCCccCCCCCcc-cccccccCeeecccccccCCcchhccCC-------------------------------
Q 041143 142 VLALDYNPFNKTFGWSIPDS-LANSVQLTNLSLINCNLVGPLPDFLGTL------------------------------- 189 (973)
Q Consensus 142 ~L~Ls~N~l~~~~~~~ip~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l------------------------------- 189 (973)
+|+|++|++++. .|.. +.++++|++|+|++|++++..+..+..+
T Consensus 133 ~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 133 MLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp EEECCSSBCCSC----CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred EEECCCCccCcc----CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 999999999874 5655 7889999999999999998877766554
Q ss_pred ---CCCCeEEccCCcCcccCChhhhhhH--HHHHhhcccCCCCC----------CCcchhhcC--CccccEEEccCCccc
Q 041143 190 ---PSLAALKLSYNRLSGVIPASFGQSL--MQILWLNDQDAGGM----------TGPIDVVAK--MVSLTQLWLHGNQFT 252 (973)
Q Consensus 190 ---~~L~~L~Ls~N~l~~~~p~~~~~~~--~~~~~l~~~~~~~~----------~~~~~~~~~--l~~L~~L~L~~N~l~ 252 (973)
++|++|+|++|++++.+|..+.... .++..+....+... ......+.. .++|+.|+|++|+++
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 288 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence 6788888888888777776664321 11111221111110 001111222 368999999999999
Q ss_pred cCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcch
Q 041143 253 GSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVN 331 (973)
Q Consensus 253 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (973)
+.+|..|..+++|++|+|++|++++..|..|..+ +|+.|+|++|.+++..|.
T Consensus 289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------------------- 341 (455)
T 3v47_A 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR--------------------------- 341 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG---------------------------
T ss_pred ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh---------------------------
Confidence 8888889999999999999999998888888887 799999999988755443
Q ss_pred hhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCc
Q 041143 332 VLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPN 411 (973)
Q Consensus 332 ~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 411 (973)
.+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+.
T Consensus 342 --------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 342 --------------------------------MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp --------------------------------GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred --------------------------------HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 234678999999999999999999999999999999999999987777
Q ss_pred cccCcCCCCeeeCCCCcCCCCCCCCCc
Q 041143 412 NFTELKSLRLLDVSDNNIKPPLPEFHD 438 (973)
Q Consensus 412 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 438 (973)
.|..+++|+.|+|++|++++..|.+..
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred HhccCCcccEEEccCCCcccCCCcchH
Confidence 889999999999999999999996543
No 270
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=328.88 Aligned_cols=331 Identities=19% Similarity=0.196 Sum_probs=247.3
Q ss_pred cCCCCCCCCCCCCC-CCcCeEEeeC------------------CeEEEEEecccCCcccCCcCcccccccceeeccCccc
Q 041143 43 LLKWPANGDDPCGP-PPWPHVFCSG------------------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKF 103 (973)
Q Consensus 43 l~~w~~~~~d~C~~-~~w~gv~C~~------------------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l 103 (973)
+.+|.. +.+||.. ..|.++.|+. ..++.|+++++.+++..+..|.++++|++|+|++|.|
T Consensus 9 l~~~~~-~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 9 VKPRQP-EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp --CCCS-EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred ccCCCC-CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 456743 3455532 2477777652 3568889999999876666689999999999999999
Q ss_pred CCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCc-ccccccccCeeecccccccCC
Q 041143 104 NGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPD-SLANSVQLTNLSLINCNLVGP 181 (973)
Q Consensus 104 ~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~-~~~~l~~L~~L~L~~N~l~~~ 181 (973)
++.++ .|.++++|++|+|++|.|+.+++..|.++++|++|+|++|+|+. +|. .|.++++|++|+|++|.|++.
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-----CCHHHhccCCCCCEEEeeCCcCCCC
Confidence 99887 89999999999999999999999999999999999999999996 554 468999999999999999999
Q ss_pred cchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccC
Q 041143 182 LPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGA 261 (973)
Q Consensus 182 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 261 (973)
.|..|+++++|++|+|++|++++.....+. .+..|....+... .+...++|+.|++++|.++. +|..+
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~----~L~~L~l~~n~l~-----~l~~~~~L~~L~ls~n~l~~-~~~~~-- 230 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINV-VRGPV-- 230 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCGGGCT----TCSEEECCSSCCS-----EEECCTTCSEEECCSSCCCE-EECSC--
T ss_pred ChhhhhcCCcCcEEECcCCCCCCcChhhhh----hhhhhhcccCccc-----cccCCchhheeeccCCcccc-ccccc--
Confidence 999999999999999999999965322221 1111221111111 12234455556666665552 22222
Q ss_pred CCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCC
Q 041143 262 LSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGV 340 (973)
Q Consensus 262 l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 340 (973)
.++|+.|+|++|.+++. ..+..+ +|+.|+|++|.|.+.+|.
T Consensus 231 ~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------------------------------ 272 (597)
T 3oja_B 231 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------------------------------------ 272 (597)
T ss_dssp CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG------------------------------------
T ss_pred CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH------------------------------------
Confidence 14566666666666542 344444 566666666665554443
Q ss_pred CCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCC
Q 041143 341 NYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLR 420 (973)
Q Consensus 341 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~ 420 (973)
.+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.|+ .+|..+..+++|+
T Consensus 273 -----------------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 273 -----------------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp -----------------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred -----------------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 34567899999999999987 5777888999999999999999 7888899999999
Q ss_pred eeeCCCCcCCCCCC-CCCcccceeecCCccccCCC
Q 041143 421 LLDVSDNNIKPPLP-EFHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 421 ~L~Ls~N~l~g~~p-~~~~~~~~~~~~N~~~c~~~ 454 (973)
.|+|++|+|++... .+..+..+++.+|+|.|...
T Consensus 328 ~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 328 NLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp EEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHH
T ss_pred EEECCCCCCCCcChhhcCCCCEEEeeCCCCCChhH
Confidence 99999999998754 35677889999999998754
No 271
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-32 Score=331.98 Aligned_cols=353 Identities=16% Similarity=0.121 Sum_probs=277.0
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|.+++..|.+|+++++|++|+|++|.+++..| .|.++++|++|+|++|+++.+++..|.++++|++|+|
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 579999999999999889999999999999999999999877 7999999999999999999999888999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCC----eEEccCCcCcccCChhhhhhHH------
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLA----ALKLSYNRLSGVIPASFGQSLM------ 215 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~~~~------ 215 (973)
++|++++. .+|..++++++|++|+|++|++++..+..|+.+++|+ +|++++|++++..+..+....+
T Consensus 136 ~~n~l~~~---~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 136 AHNFIHSC---KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp CSSCCCCC---CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred CCCcccce---echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 99999864 4799999999999999999999988777776655544 5666666665433322210000
Q ss_pred --------------------------------------------------------------------------------
Q 041143 216 -------------------------------------------------------------------------------- 215 (973)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (973)
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 292 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEe
Confidence
Q ss_pred ----------------------------------------------------------HHHhhcccCCCCCCC--cchhh
Q 041143 216 ----------------------------------------------------------QILWLNDQDAGGMTG--PIDVV 235 (973)
Q Consensus 216 ----------------------------------------------------------~~~~l~~~~~~~~~~--~~~~~ 235 (973)
++.+|+...+..... ....+
T Consensus 293 ~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp ESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred cCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 000000011111111 14567
Q ss_pred cCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCc-cccccc-ccCeEEccCCcCcCCCCCCCCCCcccc
Q 041143 236 AKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIP-KSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYD 313 (973)
Q Consensus 236 ~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~ 313 (973)
..+++|++|+|++|.++ .+|..+..+++|++|++++|++.+..| ..+..+ +|+.|++++|.+.+..|..+...-.+.
T Consensus 373 ~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 78899999999999998 477889999999999999999998877 677777 899999999999988887654443444
Q ss_pred cCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCcc
Q 041143 314 SNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLD 393 (973)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 393 (973)
..++.+........+.....+..+..++++.|.+...+.. .+..+++|+.|+|++|++++.+|..|++++
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG----------VFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT----------TTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh----------hhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 3344333221111233444567788888988887765432 356789999999999999999999999999
Q ss_pred ccceEEccCCccccccCccccCcC-CCCeeeCCCCcCCCCCC
Q 041143 394 SLIEIRLGKNSISGTVPNNFTELK-SLRLLDVSDNNIKPPLP 434 (973)
Q Consensus 394 ~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p 434 (973)
+|+.|+|++|+|+ .+|..+..++ +|++|+|++|++.+..+
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999999 7888899997 69999999999998766
No 272
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-33 Score=335.91 Aligned_cols=340 Identities=20% Similarity=0.257 Sum_probs=270.7
Q ss_pred CCeEEEEEecccCCccc-----------------CCcCcc--cccccceeeccCcccCCCCC-CCCCCCccceeeccCCC
Q 041143 66 GNRVTQIQVQNLGLKGP-----------------LPQNFN--QLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNE 125 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~-----------------~~~~~~--~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~ 125 (973)
..+++.|+|++|.++|. +|..++ ++++|++|+|++|++.+.+| .|.++++|++|+|++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 36899999999999996 999999 99999999999999999887 79999999999999998
Q ss_pred -CCC--CCccccCCC------CCccEEEcccCCCCCccCCCCCc--ccccccccCeeecccccccCCcchhccCCCCCCe
Q 041143 126 -FDT--IPSDFFDGL------SSVRVLALDYNPFNKTFGWSIPD--SLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAA 194 (973)
Q Consensus 126 -l~~--i~~~~f~~l------~~L~~L~Ls~N~l~~~~~~~ip~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 194 (973)
++. +|. .+..+ ++|++|+|++|+++. +|. .++++++|++|+|++|+++|.+| .|+++++|++
T Consensus 285 ~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 285 GISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp TSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CCccccchH-HHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 885 554 34444 899999999999983 888 89999999999999999998888 8999999999
Q ss_pred EEccCCcCcccCChhhhhhHHH-HHhhcccCCCCCCCcchhhcCC--ccccEEEccCCccccCCCcccc-------CCCC
Q 041143 195 LKLSYNRLSGVIPASFGQSLMQ-ILWLNDQDAGGMTGPIDVVAKM--VSLTQLWLHGNQFTGSIPEDIG-------ALSS 264 (973)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~l--~~L~~L~L~~N~l~g~~p~~~~-------~l~~ 264 (973)
|+|++|+++ .+|..+... .. +..|+...+... ..+..+..+ ++|+.|+|++|++++.+|..|. .+++
T Consensus 358 L~L~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp EECCSSEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred EECCCCccc-cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 999999998 888776542 22 444444444433 333455554 4899999999999999998888 8889
Q ss_pred CCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCc--------ccccCcccCCCCCcccCCcchh--h
Q 041143 265 LKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNV--------TYDSNSFCQSEPGIECAPDVNV--L 333 (973)
Q Consensus 265 L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~ 333 (973)
|++|+|++|+++...+..+..+ +|+.|+|++|.|+ .+|....... .+...++..+... ..+.... .
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~ 511 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATT 511 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGSTTT
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhhcc
Confidence 9999999999995444445555 7999999999998 6776543322 2333333333222 2333332 5
Q ss_pred hhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEec------CCCcCCCccchhhhCccccceEEccCCcccc
Q 041143 334 LDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINL------PRHNLTGTLSPSIANLDSLIEIRLGKNSISG 407 (973)
Q Consensus 334 ~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g 407 (973)
+..+..++++.|.+..+|. .+..+++|+.|+| ++|++.+.+|..++++++|+.|+|++|+| +
T Consensus 512 l~~L~~L~Ls~N~l~~ip~-----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPT-----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp CTTCCEEECCSSCCSSCCC-----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred CCCcCEEECCCCCCCCcCh-----------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-C
Confidence 6678888888888877543 4567899999999 67889999999999999999999999999 6
Q ss_pred ccCccccCcCCCCeeeCCCCcCCCC
Q 041143 408 TVPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 408 ~~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
.+|..+. ++|+.|||++|++...
T Consensus 580 ~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 580 KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ccCHhHh--CcCCEEECcCCCCccc
Confidence 9999877 8999999999987743
No 273
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=2.6e-32 Score=319.47 Aligned_cols=301 Identities=17% Similarity=0.181 Sum_probs=266.9
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|.+++..|..|.++++|++|+|++|.+++.++ .|.++++|++|+|++|++..+++..|.++++|++|+|
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 579999999999999999999999999999999999999887 5899999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDA 225 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~ 225 (973)
++|++++. .+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..+..|
T Consensus 136 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--------------- 196 (477)
T 2id5_A 136 GDNDLVYI----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--------------- 196 (477)
T ss_dssp CCTTCCEE----CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS---------------
T ss_pred CCCcccee----ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc---------------
Confidence 99999975 67789999999999999999998888889999999999999999997655444
Q ss_pred CCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 226 GGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 226 ~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
..+++|+.|+|++|.+.+.+|..+....+|++|+|++|++++..+..+..+ +|+.|+|++|.|++..+.
T Consensus 197 ----------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 197 ----------KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp ----------CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 468999999999999988999888888899999999999997666778887 899999999999854443
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
.+..+++|+.|+|++|++.+.
T Consensus 267 -----------------------------------------------------------~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 267 -----------------------------------------------------------MLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp -----------------------------------------------------------SCTTCTTCCEEECCSSCCSEE
T ss_pred -----------------------------------------------------------hccccccCCEEECCCCccceE
Confidence 234567899999999999999
Q ss_pred cchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC--C-CcccceeecCCccccCCCC
Q 041143 385 LSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE--F-HDTVKLVIDGNPLLVGGIN 455 (973)
Q Consensus 385 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~--~-~~~~~~~~~~N~~~c~~~~ 455 (973)
.|..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+. + .....+.+.++...|..+.
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999999999999999987778899999999999999999986542 1 2223356778888887553
No 274
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=5.2e-32 Score=308.11 Aligned_cols=309 Identities=20% Similarity=0.214 Sum_probs=232.4
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..++.|+++++.++...+..|..+++|++|+|++|.+++..+ .|.++++|++|+|++|+++.+++..|.++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 467889999999986555558999999999999999999887 7999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCcc-cccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccC
Q 041143 146 DYNPFNKTFGWSIPDS-LANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQD 224 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~ 224 (973)
++|+++. +|.. |.++++|++|+|++|++++..+..|.++++|++|+|++|++++.....+ ..+..+....
T Consensus 125 ~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~L~~L~l~~ 195 (390)
T 3o6n_A 125 ERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSY 195 (390)
T ss_dssp CSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGC----TTCSEEECCS
T ss_pred CCCccCc-----CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccc----cccceeeccc
Confidence 9999996 5655 6899999999999999998888899999999999999999985422221 1111111111
Q ss_pred CCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCC
Q 041143 225 AGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 225 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p 303 (973)
+... .+...++|+.|++++|.++. +|..+ .++|+.|+|++|++++. ..+..+ +|+.|++++|.+++..|
T Consensus 196 n~l~-----~~~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 NLLS-----TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SCCS-----EEECCSSCSEEECCSSCCCE-EECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cccc-----ccCCCCcceEEECCCCeeee-ccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 1111 11223455555555555552 23222 24555555555555542 234443 45555665555554333
Q ss_pred CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC
Q 041143 304 KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
. .+..+++|+.|+|++|++++
T Consensus 266 ~-----------------------------------------------------------~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 266 H-----------------------------------------------------------PFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp G-----------------------------------------------------------GGTTCSSCCEEECCSSCCCE
T ss_pred h-----------------------------------------------------------HccccccCCEEECCCCcCcc
Confidence 2 34567899999999999986
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC-CCCcccceeecCCccccCCCC
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP-EFHDTVKLVIDGNPLLVGGIN 455 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~~~~~~~~N~~~c~~~~ 455 (973)
+|..+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+.... .+.++..+++.+|++.|....
T Consensus 287 -~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 287 -LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp -EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHHHHH
T ss_pred -cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccchhHH
Confidence 5667788999999999999998 678889999999999999999987643 356778899999999986543
No 275
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.4e-32 Score=331.37 Aligned_cols=344 Identities=16% Similarity=0.146 Sum_probs=271.0
Q ss_pred CCcCcccccccceeeccCcccCC------------------CCCCCC--CCCccceeeccCCCCCCCCccccCCCCCccE
Q 041143 83 LPQNFNQLTKLYNLGLQRNKFNG------------------KLPTFS--GLSELEFAYLDFNEFDTIPSDFFDGLSSVRV 142 (973)
Q Consensus 83 ~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~--~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 142 (973)
+|..|++|++|++|+|++|.|++ +++.+. ++++|++|+|++|++....+..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 88899999999999999999999 555666 9999999999999988777788999999999
Q ss_pred EEcccCC-CCC-ccCCCCCccccccc-------ccCeeecccccccCCcch--hccCCCCCCeEEccCCcCcccCChhhh
Q 041143 143 LALDYNP-FNK-TFGWSIPDSLANSV-------QLTNLSLINCNLVGPLPD--FLGTLPSLAALKLSYNRLSGVIPASFG 211 (973)
Q Consensus 143 L~Ls~N~-l~~-~~~~~ip~~~~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 211 (973)
|+|++|+ +++ . +|..+++++ +|+.|+|++|+|+ .+|. .|+++++|++|+|++|+++ .+| .+.
T Consensus 520 L~Ls~N~~lsg~~----iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQ----LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHH----HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred EECcCCCCccccc----chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 9999998 886 4 788888777 9999999999999 8888 9999999999999999999 888 554
Q ss_pred hhHHHHHhhcccCCCCCCCcchhhcCCcc-ccEEEccCCccccCCCccccCCCC--CCEEeCcCCcccccCcccc---cc
Q 041143 212 QSLMQILWLNDQDAGGMTGPIDVVAKMVS-LTQLWLHGNQFTGSIPEDIGALSS--LKDLNLNRNQLVGLIPKSL---AN 285 (973)
Q Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-L~~L~L~~N~l~g~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~---~~ 285 (973)
. +..+..|....+... ..+..+.++++ |+.|+|++|+|+ .+|..+..++. |+.|+|++|++++.+|... ..
T Consensus 593 ~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 593 T-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp T-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred C-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 3 333444444444444 44456888998 999999999999 88988887765 9999999999998776433 22
Q ss_pred ---cccCeEEccCCcCcCCCCCCCC-CCcccccCcccCCCCCcccCCcchh-------hhhhccCCCCCCcccCCCCCCC
Q 041143 286 ---MELDNLVLNNNLLMGPIPKFKA-GNVTYDSNSFCQSEPGIECAPDVNV-------LLDFLGGVNYPVNLVSQWPGND 354 (973)
Q Consensus 286 ---l~L~~L~l~~N~l~g~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~l~~~~n~~~~~~~~~ 354 (973)
.+|+.|+|++|.|+ .+|..+. ..-.+....+..+... ........ .+..+..++++.|.+..++.
T Consensus 670 ~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-- 745 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-- 745 (876)
T ss_dssp CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG--
T ss_pred ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchH--
Confidence 26999999999998 5664321 1011111222221111 11111111 12378888999998886653
Q ss_pred CCCCCccccccC--CCCcccEEecCCCcCCCccchhhhCccccceEEccC------CccccccCccccCcCCCCeeeCCC
Q 041143 355 PCQGPWLGLSCT--SNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGK------NSISGTVPNNFTELKSLRLLDVSD 426 (973)
Q Consensus 355 ~~~~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~g~~p~~~~~l~~L~~L~Ls~ 426 (973)
.+. .+++|+.|+|++|++++ +|..++++++|+.|+|++ |++.+.+|..|.++++|+.|+|++
T Consensus 746 ---------~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 746 ---------DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp ---------GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred ---------HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 233 78899999999999998 799999999999999976 889999999999999999999999
Q ss_pred CcCCCCCCC--CCcccceeecCCcccc
Q 041143 427 NNIKPPLPE--FHDTVKLVIDGNPLLV 451 (973)
Q Consensus 427 N~l~g~~p~--~~~~~~~~~~~N~~~c 451 (973)
|+| +.+|. ..++..+++.+|++..
T Consensus 816 N~L-~~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 816 NDI-RKVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp SCC-CBCCSCCCSSSCEEECCSCTTCE
T ss_pred CCC-CccCHhhcCCCCEEECCCCCCCc
Confidence 999 67775 3566779999999754
No 276
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-31 Score=292.31 Aligned_cols=281 Identities=20% Similarity=0.285 Sum_probs=218.9
Q ss_pred EEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEccc
Q 041143 69 VTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDY 147 (973)
Q Consensus 69 v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~ 147 (973)
++.+++++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+++.+.+..|.++++|++|+|++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 345566666666 4666554 688999999999998877 688999999999999999999888899999999999999
Q ss_pred CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcc--cCChhhhhhHHHHHhhcccCC
Q 041143 148 NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSG--VIPASFGQSLMQILWLNDQDA 225 (973)
Q Consensus 148 N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~l~~~~~ 225 (973)
|+++. +|..+. ++|++|++++|++++..+..|.++++|++|+|++|+++. ..+..
T Consensus 110 n~l~~-----l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 166 (330)
T 1xku_A 110 NQLKE-----LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA---------------- 166 (330)
T ss_dssp SCCSB-----CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG----------------
T ss_pred CcCCc-----cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh----------------
Confidence 99884 666554 689999999999998888889999999999999999863 33433
Q ss_pred CCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 226 GGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 226 ~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
+.++++|++|++++|.++ .+|..+. ++|++|+|++|++++..|..+..+ +|+.|++++|.+++..+.
T Consensus 167 ---------~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 167 ---------FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp ---------GGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ---------ccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 346889999999999998 5676654 789999999999998888888887 799999999988765443
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
.+..+++|+.|+|++|+++ .
T Consensus 235 -----------------------------------------------------------~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 235 -----------------------------------------------------------SLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp -----------------------------------------------------------TGGGSTTCCEEECCSSCCS-S
T ss_pred -----------------------------------------------------------hccCCCCCCEEECCCCcCc-c
Confidence 1234567888888888888 7
Q ss_pred cchhhhCccccceEEccCCccccccCccccCc------CCCCeeeCCCCcCCC--CCC-C---CCcccceeecCC
Q 041143 385 LSPSIANLDSLIEIRLGKNSISGTVPNNFTEL------KSLRLLDVSDNNIKP--PLP-E---FHDTVKLVIDGN 447 (973)
Q Consensus 385 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~g--~~p-~---~~~~~~~~~~~N 447 (973)
+|..+..+++|++|+|++|+|++..+..|+.. ..|+.|+|++|.+.. ..| . +..+..+++.+|
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 77788888888888888888887666666543 678888888888863 222 2 344556777766
No 277
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.4e-32 Score=298.31 Aligned_cols=276 Identities=16% Similarity=0.219 Sum_probs=167.7
Q ss_pred CCChhHHHHHHHHHhhCC-CCc--cCCCC---CCCCCCCCCCCcCeEEeeC----------CeEEEEEecccCCcccCCc
Q 041143 22 ATDPNDLKILNDFKNGLE-NPE--LLKWP---ANGDDPCGPPPWPHVFCSG----------NRVTQIQVQNLGLKGPLPQ 85 (973)
Q Consensus 22 ~~~~~~~~~l~~~k~~~~-~~~--l~~w~---~~~~d~C~~~~w~gv~C~~----------~~v~~L~L~~~~l~g~~~~ 85 (973)
++..+|..||++||+++. ++. +.+|. ....++|. |.|+.|.. .+|+.|+|++++++ .+|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~---~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET---RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC---SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc---cCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 455689999999999884 432 45673 34577887 99999952 57777788777777 6677
Q ss_pred CcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccc
Q 041143 86 NFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANS 165 (973)
Q Consensus 86 ~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l 165 (973)
.++++++|++|+|++|.|+.++..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|++.+. +|..+...
T Consensus 99 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~ 173 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTE----LPEPLAST 173 (328)
T ss_dssp CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCC----CCSCSEEE
T ss_pred hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccc----cChhHhhc
Confidence 7777777777777777777433356666666666666666665433 245555555555555544442 44333220
Q ss_pred cccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEE
Q 041143 166 VQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLW 245 (973)
Q Consensus 166 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 245 (973)
..+..|.++++|++|+|++|+++ .+|..+. ++++|++|+
T Consensus 174 ---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-------------------------~l~~L~~L~ 212 (328)
T 4fcg_A 174 ---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIA-------------------------NLQNLKSLK 212 (328)
T ss_dssp ---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGG-------------------------GCTTCCEEE
T ss_pred ---------------cchhhhccCCCCCEEECcCCCcC-cchHhhc-------------------------CCCCCCEEE
Confidence 00112333555555555555555 4444432 355555555
Q ss_pred ccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcc
Q 041143 246 LHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIE 325 (973)
Q Consensus 246 L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 325 (973)
|++|+++ .+|..+..+++|++|+|++|++.+.+|..+..
T Consensus 213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~---------------------------------------- 251 (328)
T 4fcg_A 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG---------------------------------------- 251 (328)
T ss_dssp EESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC----------------------------------------
T ss_pred ccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC----------------------------------------
Confidence 5555555 34445555555555555555555544444333
Q ss_pred cCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCcc
Q 041143 326 CAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSI 405 (973)
Q Consensus 326 ~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 405 (973)
+++|+.|+|++|++.+.+|..++++++|+.|+|++|++
T Consensus 252 ------------------------------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 252 ------------------------------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp ------------------------------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred ------------------------------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 34555555555555566666667777777777777777
Q ss_pred ccccCccccCcCCCCeeeCCCCcCC
Q 041143 406 SGTVPNNFTELKSLRLLDVSDNNIK 430 (973)
Q Consensus 406 ~g~~p~~~~~l~~L~~L~Ls~N~l~ 430 (973)
.+.+|..+.++++|+.++++.|.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777777777777777766554
No 278
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=318.19 Aligned_cols=321 Identities=20% Similarity=0.239 Sum_probs=243.0
Q ss_pred eeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCC-ccccCCCCCccE
Q 041143 64 CSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIP-SDFFDGLSSVRV 142 (973)
Q Consensus 64 C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~ 142 (973)
+...+++.|+|++|.+++..|..|+++++|++|+|++|+|+.+++. .+++|++|+|++|+|+.++ +..|.++++|++
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 3446899999999999999899999999999999999999965445 8999999999999999875 578999999999
Q ss_pred EEcccCCCCCccCCCCCccccccccc--Ceeecccccc--cCCcchhccCCC----------------------------
Q 041143 143 LALDYNPFNKTFGWSIPDSLANSVQL--TNLSLINCNL--VGPLPDFLGTLP---------------------------- 190 (973)
Q Consensus 143 L~Ls~N~l~~~~~~~ip~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~---------------------------- 190 (973)
|+|++|++++. .+..+++| +.|+|++|.+ .+..|..+..+.
T Consensus 120 L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 120 LGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp EEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred EEecCcccchh-------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 99999998752 44555555 6666666666 445554444422
Q ss_pred -------------------------------------------------------CCCeEEccCCcCcccCChhhh----
Q 041143 191 -------------------------------------------------------SLAALKLSYNRLSGVIPASFG---- 211 (973)
Q Consensus 191 -------------------------------------------------------~L~~L~Ls~N~l~~~~p~~~~---- 211 (973)
+|++|+|++|+++|.+|..+.
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred eeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence 566666666666655555441
Q ss_pred -h----------------------hH---HHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCC
Q 041143 212 -Q----------------------SL---MQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSL 265 (973)
Q Consensus 212 -~----------------------~~---~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L 265 (973)
. .. .++..|....+..... ..+..+++|++|+|++|++++.+|..+..+++|
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 350 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM--LCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred ccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc--cchhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence 0 00 0122222222222211 112678999999999999998899999999999
Q ss_pred CEEeCcCCcccc--cCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCC
Q 041143 266 KDLNLNRNQLVG--LIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNY 342 (973)
Q Consensus 266 ~~L~Ls~N~l~~--~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 342 (973)
++|+|++|++++ .+|..+..+ +|+.|++++|.+++.+|..... .+..+..+++
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~------------------------~l~~L~~L~L 406 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS------------------------WTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC------------------------CCTTCCEEEC
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc------------------------cCccCCEEEC
Confidence 999999999997 556778887 8999999999999877753111 1234556667
Q ss_pred CCcccCCCCCCCCCCCCccccccCCC-CcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCcc-ccCcCCCC
Q 041143 343 PVNLVSQWPGNDPCQGPWLGLSCTSN-SKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNN-FTELKSLR 420 (973)
Q Consensus 343 ~~n~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~ 420 (973)
+.|.+.... +..+ ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|+ .+|.. |..+++|+
T Consensus 407 s~N~l~~~~-------------~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 407 SSNILTDTI-------------FRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CSSCCCGGG-------------GGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCCCcch-------------hhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 666654211 1112 68999999999999 88888889999999999999999 57765 99999999
Q ss_pred eeeCCCCcCCCCCC
Q 041143 421 LLDVSDNNIKPPLP 434 (973)
Q Consensus 421 ~L~Ls~N~l~g~~p 434 (973)
+|+|++|++++..+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 99999999998765
No 279
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.6e-31 Score=292.02 Aligned_cols=281 Identities=21% Similarity=0.311 Sum_probs=210.0
Q ss_pred EEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEccc
Q 041143 69 VTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDY 147 (973)
Q Consensus 69 v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~ 147 (973)
++.+++++++++ .+|..+. ++|++|+|++|.+++.++ .|.++++|++|+|++|+|+.+++..|.++++|++|+|++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 445666777776 5676664 688999999999988877 688899999999999999998888899999999999999
Q ss_pred CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcc--cCChhhhhhHHHHHhhcccCC
Q 041143 148 NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSG--VIPASFGQSLMQILWLNDQDA 225 (973)
Q Consensus 148 N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~l~~~~~ 225 (973)
|+++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+++. ..|..+
T Consensus 112 n~l~~-----l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 169 (332)
T 2ft3_A 112 NHLVE-----IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--------------- 169 (332)
T ss_dssp SCCCS-----CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS---------------
T ss_pred CcCCc-----cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc---------------
Confidence 99884 666655 789999999999987777788999999999999999863 444433
Q ss_pred CCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 226 GGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 226 ~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
..+ +|++|++++|+++ .+|..+. ++|++|+|++|++++..+..+..+ +|+.|++++|.+++..|.
T Consensus 170 ----------~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 170 ----------DGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp ----------CSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred ----------cCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence 345 7888888888888 4666554 688888888888887777777777 788888888888764443
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
.+..+++|+.|+|++|+++ .
T Consensus 236 -----------------------------------------------------------~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 236 -----------------------------------------------------------SLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp -----------------------------------------------------------GGGGCTTCCEEECCSSCCC-B
T ss_pred -----------------------------------------------------------HhhCCCCCCEEECCCCcCe-e
Confidence 1234567788888888887 6
Q ss_pred cchhhhCccccceEEccCCccccccCccccCc------CCCCeeeCCCCcCC--CCCCC----CCcccceeecCCc
Q 041143 385 LSPSIANLDSLIEIRLGKNSISGTVPNNFTEL------KSLRLLDVSDNNIK--PPLPE----FHDTVKLVIDGNP 448 (973)
Q Consensus 385 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~--g~~p~----~~~~~~~~~~~N~ 448 (973)
+|..+..+++|+.|+|++|+|++..+..|..+ ..|+.|+|++|.+. +..|. +..+..+.+.+|.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77778888888888888888876666666553 56778888888776 33332 3344556666653
No 280
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=318.57 Aligned_cols=355 Identities=17% Similarity=0.137 Sum_probs=261.3
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|++++..+..|+++++|++|+|++|.+++.+| .|.++++|++|+|++|+++.++...|.++++|++|+|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 579999999999999888899999999999999999999887 7999999999999999999999988999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCC----CeEEccCCcCcccCChhhhhhH-------
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSL----AALKLSYNRLSGVIPASFGQSL------- 214 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L----~~L~Ls~N~l~~~~p~~~~~~~------- 214 (973)
++|++++. .+|..++++++|++|++++|++++..+..++.+++| +.|++++|.+++..|..+....
T Consensus 132 ~~n~l~~~---~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 132 AHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp CSSCCCCC---CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred CCCcccee---cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 99999864 478999999999999999999998888888888888 8889999888766554432100
Q ss_pred -------------------------------------------------------------------------HHHHhhc
Q 041143 215 -------------------------------------------------------------------------MQILWLN 221 (973)
Q Consensus 215 -------------------------------------------------------------------------~~~~~l~ 221 (973)
..+..+.
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence 0000111
Q ss_pred ccCCCCCCCcchhh------------------------------------------cCCccccEEEccCCccccCC--Cc
Q 041143 222 DQDAGGMTGPIDVV------------------------------------------AKMVSLTQLWLHGNQFTGSI--PE 257 (973)
Q Consensus 222 ~~~~~~~~~~~~~~------------------------------------------~~l~~L~~L~L~~N~l~g~~--p~ 257 (973)
...+... ..+..+ ..+++|++|+|++|++++.. |.
T Consensus 289 l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 289 LVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred ecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 1111100 000111 34566777777777776443 56
Q ss_pred cccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCC-CCCCcccccCcccCCCCCcccCCcchhhhh
Q 041143 258 DIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKF-KAGNVTYDSNSFCQSEPGIECAPDVNVLLD 335 (973)
Q Consensus 258 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (973)
.+..+++|++|+|++|.+.+..+. +..+ +|+.|++++|.+.+..|.. +...-.+...++..... ....+.....+.
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLS 445 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EECCTTTTTTCT
T ss_pred cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-cccchhhhhcCC
Confidence 677777777777777777765444 6665 6888888888877765532 11111111122221111 011112223345
Q ss_pred hccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccC
Q 041143 336 FLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTE 415 (973)
Q Consensus 336 ~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 415 (973)
.+..+++..|.+... .....+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..
T Consensus 446 ~L~~L~l~~n~l~~~---------~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 446 SLEVLKMAGNSFQEN---------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TCCEEECTTCEEGGG---------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCcEEECcCCcCccc---------cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 566667777665420 11124567899999999999999999999999999999999999999988889999
Q ss_pred cCCCCeeeCCCCcCCCCCCCC
Q 041143 416 LKSLRLLDVSDNNIKPPLPEF 436 (973)
Q Consensus 416 l~~L~~L~Ls~N~l~g~~p~~ 436 (973)
+++|+.|+|++|++++..|..
T Consensus 517 l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CTTCCEEECCSSCBCCCTTTT
T ss_pred ccCCcEEEecCCcccCCCcch
Confidence 999999999999999998864
No 281
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.8e-31 Score=316.66 Aligned_cols=345 Identities=19% Similarity=0.222 Sum_probs=256.4
Q ss_pred CCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCC-CCCCCccceeeccCCCCCCCC-ccccCCCCCccEE
Q 041143 66 GNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPT-FSGLSELEFAYLDFNEFDTIP-SDFFDGLSSVRVL 143 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~L 143 (973)
..++++|+|++|.+++..|.+|+++++|++|+|++|.+++.++. |.++++|++|+|++|+++.++ +..|.++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 35799999999999988888999999999999999999998884 899999999999999998764 4578899999999
Q ss_pred EcccCCCCCccCCCCC-cccccccccCeeecccccccCCcchhccC------------------------CCCCCeEEcc
Q 041143 144 ALDYNPFNKTFGWSIP-DSLANSVQLTNLSLINCNLVGPLPDFLGT------------------------LPSLAALKLS 198 (973)
Q Consensus 144 ~Ls~N~l~~~~~~~ip-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------------------------l~~L~~L~Ls 198 (973)
+|++|++.+. +| ..+.++++|++|+|++|++++..|..+++ +++|++|+|+
T Consensus 129 ~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 129 RIGNVETFSE----IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp EEEESSSCCE----ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ECCCCccccc----cCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 9999985442 44 57888889999999999888877776654 5667777777
Q ss_pred CCcCcccC--Chhh-------------------------hhh--------------------------------------
Q 041143 199 YNRLSGVI--PASF-------------------------GQS-------------------------------------- 213 (973)
Q Consensus 199 ~N~l~~~~--p~~~-------------------------~~~-------------------------------------- 213 (973)
+|++++.. |..+ ...
T Consensus 205 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCC
T ss_pred CCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccc
Confidence 77776531 1000 000
Q ss_pred ------------------------HHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCc---cccCCCCCC
Q 041143 214 ------------------------LMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPE---DIGALSSLK 266 (973)
Q Consensus 214 ------------------------~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~---~~~~l~~L~ 266 (973)
..++..+....+.....+...+.++++|++|+|++|++++.+|. .++.+++|+
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 00011111112222223334446799999999999999987753 478899999
Q ss_pred EEeCcCCcccccCc--cccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCC
Q 041143 267 DLNLNRNQLVGLIP--KSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYP 343 (973)
Q Consensus 267 ~L~Ls~N~l~~~~p--~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 343 (973)
+|+|++|++++..+ ..+..+ +|+.|++++|+|+ .+|..+...-.+...++.++. +...+. .....+..++++
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~--l~~l~~--~~~~~L~~L~Ls 439 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG--IRVVKT--CIPQTLEVLDVS 439 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC--CSCCCT--TSCTTCSEEECC
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC--cccccc--hhcCCceEEECC
Confidence 99999999987543 456776 7999999999998 567644332222222332222 111111 112467888899
Q ss_pred CcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeee
Q 041143 344 VNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLD 423 (973)
Q Consensus 344 ~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ 423 (973)
.|.+..++ ..+++|++|+|++|+++ .+|. ...+++|+.|+|++|+|++.+|..|..+++|+.|+
T Consensus 440 ~N~l~~~~--------------~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 440 NNNLDSFS--------------LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp SSCCSCCC--------------CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CCChhhhc--------------ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence 99887753 35789999999999998 6676 57899999999999999999999999999999999
Q ss_pred CCCCcCCCCCCC
Q 041143 424 VSDNNIKPPLPE 435 (973)
Q Consensus 424 Ls~N~l~g~~p~ 435 (973)
|++|++++..|.
T Consensus 504 l~~N~~~~~~~~ 515 (549)
T 2z81_A 504 LHTNPWDCSCPR 515 (549)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCccCCCcc
Confidence 999999998874
No 282
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.1e-31 Score=315.36 Aligned_cols=305 Identities=20% Similarity=0.253 Sum_probs=255.2
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..++.|+|++|.+++..+..|+++++|++|+|++|.|++.+| .|.++++|++|+|++|.|+.+++..|.++++|++|+|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 579999999999999888899999999999999999999888 5899999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccC-ChhhhhhHHHHHhhcccC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVI-PASFGQSLMQILWLNDQD 224 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~~l~~~~ 224 (973)
++|.+++. .|..|.++++|++|+|++|.|++.. ++.+++|+.|++++|.+++.. |.. + ..|....
T Consensus 155 s~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~-----L--~~L~ls~ 220 (597)
T 3oja_B 155 SNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIA-----V--EELDASH 220 (597)
T ss_dssp CSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTT-----C--SEEECCS
T ss_pred eCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCch-----h--heeeccC
Confidence 99999985 6778999999999999999999653 667899999999999998632 221 2 2233333
Q ss_pred CCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCC
Q 041143 225 AGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 225 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p 303 (973)
+.....+.. ..++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|..+ +|+.|+|++|.|++. |
T Consensus 221 n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~ 294 (597)
T 3oja_B 221 NSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-N 294 (597)
T ss_dssp SCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-E
T ss_pred Ccccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-C
Confidence 332222211 24689999999999996 4789999999999999999999999999988 899999999999852 3
Q ss_pred CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC
Q 041143 304 KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
. .+..+++|+.|+|++|.+.
T Consensus 295 ~-----------------------------------------------------------~~~~l~~L~~L~Ls~N~l~- 314 (597)
T 3oja_B 295 L-----------------------------------------------------------YGQPIPTLKVLDLSHNHLL- 314 (597)
T ss_dssp C-----------------------------------------------------------SSSCCTTCCEEECCSSCCC-
T ss_pred c-----------------------------------------------------------ccccCCCCcEEECCCCCCC-
Confidence 2 1234678999999999999
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC--CCCcccceeecCCccccCCC
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP--EFHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~~~~~~~~N~~~c~~~ 454 (973)
.+|..++.+++|+.|+|++|+|++. | +..+++|+.|+|++|++++... .+..+....+.+|+..|+..
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence 6788899999999999999999854 3 7888999999999999987533 23444555677888888754
No 283
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=293.75 Aligned_cols=304 Identities=21% Similarity=0.270 Sum_probs=251.8
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++.+| .|.++++|++|+|++|+|+.+++..|.++++|++|+|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 579999999999998888899999999999999999999888 5899999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc-CChhhhhhHHHHHhhcccC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV-IPASFGQSLMQILWLNDQD 224 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~l~~~~ 224 (973)
++|++++. .|..+..+++|++|+|++|++++. .+..+++|++|++++|.+++. .|.. +..|....
T Consensus 149 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~-------L~~L~l~~ 214 (390)
T 3o6n_A 149 SNNNLERI----EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIA-------VEELDASH 214 (390)
T ss_dssp CSSCCCBC----CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEECCSS-------CSEEECCS
T ss_pred CCCccCcc----ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccCCCCc-------ceEEECCC
Confidence 99999974 567799999999999999999964 367789999999999999853 2221 22233333
Q ss_pred CCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCC
Q 041143 225 AGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 225 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p 303 (973)
+.....+. ...++|+.|+|++|++++. ..+..+++|++|+|++|.+++..|..|..+ +|+.|+|++|++++. |
T Consensus 215 n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~ 288 (390)
T 3o6n_A 215 NSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-N 288 (390)
T ss_dssp SCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-E
T ss_pred Ceeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-C
Confidence 33322222 2357999999999999964 589999999999999999999989999888 899999999999752 2
Q ss_pred CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC
Q 041143 304 KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
. ....+++|+.|+|++|++.
T Consensus 289 ~-----------------------------------------------------------~~~~l~~L~~L~L~~n~l~- 308 (390)
T 3o6n_A 289 L-----------------------------------------------------------YGQPIPTLKVLDLSHNHLL- 308 (390)
T ss_dssp C-----------------------------------------------------------SSSCCTTCCEEECCSSCCC-
T ss_pred c-----------------------------------------------------------ccCCCCCCCEEECCCCcce-
Confidence 1 1234678999999999998
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC--CCCcccceeecCCccccCC
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP--EFHDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~~~~~~~~N~~~c~~ 453 (973)
.+|..+..+++|+.|+|++|+|+. +| +..+++|+.|+|++|++++.-. .+..+....+.+++..|..
T Consensus 309 ~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 309 HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 567778999999999999999984 44 7889999999999999987532 1344445556777777763
No 284
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=280.60 Aligned_cols=290 Identities=22% Similarity=0.272 Sum_probs=240.8
Q ss_pred cCCCCCCCCCCCCCCCcCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CC
Q 041143 43 LLKWPANGDDPCGPPPWPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TF 110 (973)
Q Consensus 43 l~~w~~~~~d~C~~~~w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 110 (973)
...|....+..|. |.|..+.|+. ..++.|+|++|++++..+..|+++++|++|+|++|.+++..| .|
T Consensus 18 i~~~~~~cp~~c~-c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 18 IEPMGPVCPFRCQ-CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp ----CCCCCTTCE-EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred cccccCCCCCCCc-CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence 4456444444453 4599999974 367889999999998888889999999999999999999866 79
Q ss_pred CCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccC--CcchhccC
Q 041143 111 SGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVG--PLPDFLGT 188 (973)
Q Consensus 111 ~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~ 188 (973)
.++++|++|+|++|+|+.++...+ ++|++|+|++|++++. .+..+.++++|+.|+|++|.+.. ..+..|.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKV----RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBB----CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred cCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCccccc----CHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 999999999999999999988765 7899999999999974 45568899999999999999963 77888999
Q ss_pred CCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEE
Q 041143 189 LPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDL 268 (973)
Q Consensus 189 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L 268 (973)
+++|++|++++|+++ .+|..+ .++|++|+|++|++++..|..|..+++|++|
T Consensus 170 l~~L~~L~l~~n~l~-~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 170 MKKLSYIRIADTNIT-TIPQGL---------------------------PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp CTTCCEEECCSSCCC-SCCSSC---------------------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CCCcCEEECCCCccc-cCCccc---------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 999999999999998 456543 3789999999999998888999999999999
Q ss_pred eCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCccc
Q 041143 269 NLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLV 347 (973)
Q Consensus 269 ~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~ 347 (973)
+|++|++++..+..+..+ +|+.|+|++|.++ .+|.
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~------------------------------------------- 257 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG------------------------------------------- 257 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT-------------------------------------------
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh-------------------------------------------
Confidence 999999998888888887 8999999999987 4554
Q ss_pred CCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCc------cccceEEccCCcccc--ccCccccCcCCC
Q 041143 348 SQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANL------DSLIEIRLGKNSISG--TVPNNFTELKSL 419 (973)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~g--~~p~~~~~l~~L 419 (973)
.+..+++|++|+|++|++++..+..|... ..|+.|+|++|.+.. ..|..|..+.+|
T Consensus 258 ----------------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 258 ----------------GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp ----------------TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred ----------------hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 12456789999999999999888877643 778999999999863 566789999999
Q ss_pred CeeeCCCCc
Q 041143 420 RLLDVSDNN 428 (973)
Q Consensus 420 ~~L~Ls~N~ 428 (973)
+.++|++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 999999985
No 285
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.8e-30 Score=308.46 Aligned_cols=357 Identities=16% Similarity=0.144 Sum_probs=221.9
Q ss_pred EEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 70 TQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 70 ~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
+.++++++++++ +|..+. ++|++|+|++|.|++.++ .|.++++|++|+|++|+|+.++++.|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999995 777665 899999999999999887 7999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccC-CcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCC
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVG-PLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGG 227 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~ 227 (973)
+|+. +|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++.....+....++.+.+..+....
T Consensus 111 ~l~~-----lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQN-----ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCCE-----ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCC
T ss_pred cCCc-----cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccc
Confidence 9995 6766 89999999999999997 45789999999999999999998532222211000112222222100
Q ss_pred CCCcchhhcCCc-cccEEEccCCccccCCCc-cccCCCCCCEEeCcCCc----------------------------ccc
Q 041143 228 MTGPIDVVAKMV-SLTQLWLHGNQFTGSIPE-DIGALSSLKDLNLNRNQ----------------------------LVG 277 (973)
Q Consensus 228 ~~~~~~~~~~l~-~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~Ls~N~----------------------------l~~ 277 (973)
....+..+..+. ..-.+++++|.+.+.++. .+..+++|+.|++++|+ +.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 111122222211 000122222222222211 11122334444444432 211
Q ss_pred c----CcccccccccCeEEccCCcCcCCCCCCCCC----Ccc---------------------------cccCcccCCCC
Q 041143 278 L----IPKSLANMELDNLVLNNNLLMGPIPKFKAG----NVT---------------------------YDSNSFCQSEP 322 (973)
Q Consensus 278 ~----~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~----~~~---------------------------~~~~~~~~~~~ 322 (973)
. ++..+...+|++|++++|.++|.+|..+.. .+. +....+.+...
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 1 011111115677777777777777664310 000 00111111100
Q ss_pred CcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC--ccchhhhCccccceEEc
Q 041143 323 GIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG--TLSPSIANLDSLIEIRL 400 (973)
Q Consensus 323 ~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L 400 (973)
.. ......+..+..+++..|.+..... ..+..+++|+.|+|++|++++ .+|..++++++|+.|+|
T Consensus 344 --~~-~~~~~~l~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 344 --IH-MVCPPSPSSFTFLNFTQNVFTDSVF----------QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp --CC-CCCCSSCCCCCEEECCSSCCCTTTT----------TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred --cc-ccCccCCCCceEEECCCCccccchh----------hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 00 0000223455666666666654211 134567778888888888876 34566778888888888
Q ss_pred cCCccccccCc-cccCcCCCCeeeCCCCcCCCCCCCC--CcccceeecCCcc
Q 041143 401 GKNSISGTVPN-NFTELKSLRLLDVSDNNIKPPLPEF--HDTVKLVIDGNPL 449 (973)
Q Consensus 401 ~~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~--~~~~~~~~~~N~~ 449 (973)
++|+|++.+|. .+..+++|++|+|++|+|++.+|.. .++..+++.+|..
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcC
Confidence 88888775554 3677778888888888887766643 3566777777754
No 286
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.9e-30 Score=322.55 Aligned_cols=338 Identities=19% Similarity=0.180 Sum_probs=260.3
Q ss_pred EEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCC-CCCCCCccccCCCCCccEEEcccC
Q 041143 71 QIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFN-EFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 71 ~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
.++.++++++ .+|. ..++|++|||++|.|++..+ .|.++++|++|+|++| .+..+++..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4567777887 4565 45899999999999999877 7999999999999999 556788999999999999999999
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchh--ccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDF--LGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
++.+. .|..|.++++|++|+|++|.+++.+|.. |+++++|++|+|++|++++..+..
T Consensus 84 ~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~----------------- 142 (844)
T 3j0a_A 84 KIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP----------------- 142 (844)
T ss_dssp CCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----------------
T ss_pred cCccc----CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----------------
Confidence 99985 7899999999999999999999877665 999999999999999998765532
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCC--CCCCEEeCcCCcccccCccccccc-------ccCeEEccCCc
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGAL--SSLKDLNLNRNQLVGLIPKSLANM-------ELDNLVLNNNL 297 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l-------~L~~L~l~~N~ 297 (973)
.|.++++|++|+|++|.+++..|..+..+ ++|+.|+|++|.+.+..|..+..+ .|+.|++++|.
T Consensus 143 -------~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 143 -------SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp -------GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred -------hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 13569999999999999998899999887 899999999999998887766543 49999999999
Q ss_pred CcCCCCCCCCCCccc---ccCccc---------CCCCCcccCCcchhh-hhhccCCCCCCcccCCCCCCCCCCCCccccc
Q 041143 298 LMGPIPKFKAGNVTY---DSNSFC---------QSEPGIECAPDVNVL-LDFLGGVNYPVNLVSQWPGNDPCQGPWLGLS 364 (973)
Q Consensus 298 l~g~~p~~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~-~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~ 364 (973)
+.+.+|..+...+.. ....+. ..............+ ...+..++++.|.+...+.. .
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----------~ 285 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----------V 285 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----------C
T ss_pred CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh----------h
Confidence 988877654322111 000000 000000000000011 23466667777766554322 3
Q ss_pred cCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC----CCccc
Q 041143 365 CTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE----FHDTV 440 (973)
Q Consensus 365 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~ 440 (973)
+..+++|+.|+|++|++.+..|..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|++++..+. +.++.
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 55677888888888888888888888888888888888888877788888888888888888888877664 34556
Q ss_pred ceeecCCccc
Q 041143 441 KLVIDGNPLL 450 (973)
Q Consensus 441 ~~~~~~N~~~ 450 (973)
.+.+.+|...
T Consensus 366 ~L~Ls~N~l~ 375 (844)
T 3j0a_A 366 TLDLRDNALT 375 (844)
T ss_dssp EEEEETCCSC
T ss_pred EEECCCCCCC
Confidence 6788887653
No 287
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=291.24 Aligned_cols=284 Identities=19% Similarity=0.275 Sum_probs=235.2
Q ss_pred CCCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCC
Q 041143 51 DDPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTI 129 (973)
Q Consensus 51 ~d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i 129 (973)
..+|. |.|+ | ++++++++ .+|..+. ++|++|+|++|++++.++ .|.++++|++|+|++|+|+.+
T Consensus 27 ~~~C~---~~~~-c--------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 27 SLSCD---RNGI-C--------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp CCEEC---TTSE-E--------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred CCCCC---CCeE-e--------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 34565 8887 6 34667777 5677665 589999999999999887 799999999999999999999
Q ss_pred CccccCCCCCccEEEcccCCCCCccCCCCCcc-cccccccCeeecccccccCCcc-hhccCCCCCCeEEccCCc-CcccC
Q 041143 130 PSDFFDGLSSVRVLALDYNPFNKTFGWSIPDS-LANSVQLTNLSLINCNLVGPLP-DFLGTLPSLAALKLSYNR-LSGVI 206 (973)
Q Consensus 130 ~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~-~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~-l~~~~ 206 (973)
++..|.++++|++|+|++|++++ +|.. +.++++|++|+|++|++++..+ ..|.++++|++|+|++|+ +.+..
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSN-----LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSS-----CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CHhhcCCCCCCCEEECCCCcCCc-----CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 99999999999999999999996 5554 8899999999999999996544 489999999999999994 66544
Q ss_pred ChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc
Q 041143 207 PASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM 286 (973)
Q Consensus 207 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 286 (973)
+..+ .++++|++|+|++|++++..|..+..+++|++|+|++|+++...+..+..+
T Consensus 167 ~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 221 (353)
T 2z80_A 167 RKDF-------------------------AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221 (353)
T ss_dssp TTTT-------------------------TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT
T ss_pred HHHc-------------------------cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc
Confidence 5444 469999999999999998889999999999999999999975433344444
Q ss_pred -ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCcccccc
Q 041143 287 -ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSC 365 (973)
Q Consensus 287 -~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~ 365 (973)
+|+.|++++|.+++..+..+. ..
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~--------------------------------------------------------~~ 245 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELS--------------------------------------------------------TG 245 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC-------------------------------------------------------------
T ss_pred ccccEEECCCCccccccccccc--------------------------------------------------------cc
Confidence 799999999999865443110 01
Q ss_pred CCCCcccEEecCCCcCCC----ccchhhhCccccceEEccCCccccccCcc-ccCcCCCCeeeCCCCcCCCCCCCC
Q 041143 366 TSNSKVSIINLPRHNLTG----TLSPSIANLDSLIEIRLGKNSISGTVPNN-FTELKSLRLLDVSDNNIKPPLPEF 436 (973)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~~ 436 (973)
.....++.++|++|.+.+ .+|..+.++++|+.|+|++|+|+ .+|.. |..+++|++|+|++|++++..|.+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 123467788888888887 57888999999999999999999 66766 589999999999999999988743
No 288
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.3e-29 Score=281.62 Aligned_cols=282 Identities=24% Similarity=0.286 Sum_probs=229.6
Q ss_pred CCCCCCCCCcCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccc
Q 041143 50 GDDPCGPPPWPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELE 117 (973)
Q Consensus 50 ~~d~C~~~~w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~ 117 (973)
.+..|. |.|..+.|+. ..++.|+|++|.+++..+..|.++++|++|+|++|.+++..| .|.++++|+
T Consensus 27 cp~~c~-c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 27 CPFGCH-CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp CCSSCE-EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred CCCCCc-ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 344442 3588898864 257889999999998878889999999999999999998876 688899999
Q ss_pred eeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccccc--CCcchhccCCCCCCeE
Q 041143 118 FAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLV--GPLPDFLGTLPSLAAL 195 (973)
Q Consensus 118 ~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L 195 (973)
+|+|++|+++.+|...+ ++|++|+|++|+++.. .+..|.++++|+.|+|++|.++ +..+..+..+ +|++|
T Consensus 106 ~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKV----PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp EEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCC----CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred EEECCCCcCCccCcccc---ccCCEEECCCCccCcc----CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 99999999999888766 7899999999999863 3446888999999999999986 4777888888 89999
Q ss_pred EccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcc
Q 041143 196 KLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQL 275 (973)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 275 (973)
++++|++++ +|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|++
T Consensus 178 ~l~~n~l~~-l~~~~---------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 178 RISEAKLTG-IPKDL---------------------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp BCCSSBCSS-CCSSS---------------------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred ECcCCCCCc-cCccc---------------------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 999999984 55543 36889999999999987778899999999999999999
Q ss_pred cccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCC
Q 041143 276 VGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGND 354 (973)
Q Consensus 276 ~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~ 354 (973)
++..+..+..+ +|+.|++++|.|+ .+|.
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------------------------------------------------- 258 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNKLS-RVPA-------------------------------------------------- 258 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCCC-BCCT--------------------------------------------------
T ss_pred CcCChhHhhCCCCCCEEECCCCcCe-ecCh--------------------------------------------------
Confidence 98887788877 7999999999887 4554
Q ss_pred CCCCCccccccCCCCcccEEecCCCcCCCccchhhhCc------cccceEEccCCccc--cccCccccCcCCCCeeeCCC
Q 041143 355 PCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANL------DSLIEIRLGKNSIS--GTVPNNFTELKSLRLLDVSD 426 (973)
Q Consensus 355 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~--g~~p~~~~~l~~L~~L~Ls~ 426 (973)
.+..+++|+.|+|++|++++..+..|..+ ..|+.|+|++|.+. +..|..|..+++|+.|+|++
T Consensus 259 ---------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 259 ---------GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp ---------TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ---------hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 12456789999999999998887777654 66889999999887 66778889999999999998
Q ss_pred Cc
Q 041143 427 NN 428 (973)
Q Consensus 427 N~ 428 (973)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 85
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.5e-29 Score=281.24 Aligned_cols=299 Identities=23% Similarity=0.319 Sum_probs=222.2
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
..+++|++++++++. ++ .+..+++|++|+|++|.+++..+ +.++++|++|+|++|+++.++ .|.++++|++|+|+
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 578999999999974 33 48999999999999999998766 899999999999999999875 58999999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
+|++++ ++. +..+++|+.|++++|.....++ .+..+++|++|++++|++.+..+ +
T Consensus 119 ~n~i~~-----~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~---------------- 173 (347)
T 4fmz_A 119 EDNISD-----ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--I---------------- 173 (347)
T ss_dssp TSCCCC-----CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--G----------------
T ss_pred CCcccC-----chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--h----------------
Confidence 999986 444 8899999999999997664444 48999999999999999884433 2
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCC
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKF 305 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~ 305 (973)
..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+..+ +..+ +|+.|++++|.+++..+
T Consensus 174 ---------~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 174 ---------ANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp ---------GGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred ---------ccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 246666677777766663 332 6666666777777666665433 4444 56666666666654222
Q ss_pred CCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCcc
Q 041143 306 KAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTL 385 (973)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 385 (973)
...+..+..+++..|.+..++ .+..+++|+.|++++|++++.
T Consensus 239 -------------------------~~~l~~L~~L~l~~n~l~~~~------------~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 239 -------------------------LANLSQLTWLEIGTNQISDIN------------AVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp -------------------------GTTCTTCCEEECCSSCCCCCG------------GGTTCTTCCEEECCSSCCCCC-
T ss_pred -------------------------hhcCCCCCEEECCCCccCCCh------------hHhcCCCcCEEEccCCccCCC-
Confidence 011223444455555444431 245677889999999988875
Q ss_pred chhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC--CCCcccceeecCCcc
Q 041143 386 SPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP--EFHDTVKLVIDGNPL 449 (973)
Q Consensus 386 p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~~~~~~~~N~~ 449 (973)
+.+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++.+| .+..+..+++.+|++
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC--
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhcc
Confidence 458888899999999999988888888889999999999999988776 345566788888874
No 290
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.7e-29 Score=291.44 Aligned_cols=318 Identities=23% Similarity=0.318 Sum_probs=184.4
Q ss_pred eEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEccc
Q 041143 68 RVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDY 147 (973)
Q Consensus 68 ~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~ 147 (973)
+++.|+|++|.+++..+ |.++++|++|+|++|.+++..+ +.++++|++|+|++|+++.+++ |.++++|++|+|++
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCC
Confidence 45555555555554322 5555555555555555555444 5555555555555555555543 55555555555555
Q ss_pred CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCC
Q 041143 148 NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGG 227 (973)
Q Consensus 148 N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~ 227 (973)
|++.+ ++ .+..+++|+.|+++ |.+.+.. .+.++++|++|+|++|++++. +. +. .+..+..|....+..
T Consensus 144 n~l~~-----~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~-l~-~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 144 NTISD-----IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI-SV-LA-KLTNLESLIATNNQI 211 (466)
T ss_dssp EEECC-----CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GG-GCTTCSEEECCSSCC
T ss_pred CccCC-----Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC-hh-hc-cCCCCCEEEecCCcc
Confidence 55553 22 34455555555553 3333222 256666666666666666532 21 21 111222222222221
Q ss_pred CCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCC
Q 041143 228 MTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFK 306 (973)
Q Consensus 228 ~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~ 306 (973)
.... .+..+++|+.|+|++|++++ + ..+..+++|++|++++|.+++..+ +..+ +|+.|++++|.+++..+
T Consensus 212 ~~~~--~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--- 282 (466)
T 1o6v_A 212 SDIT--PLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--- 282 (466)
T ss_dssp CCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---
T ss_pred cccc--cccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc---
Confidence 1111 13445555555555555552 2 244555555555555555554433 3333 45555555555543221
Q ss_pred CCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccc
Q 041143 307 AGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLS 386 (973)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 386 (973)
...+..+..+++..|.+..++ .+..+++|+.|+|++|++.+..|
T Consensus 283 ------------------------~~~l~~L~~L~L~~n~l~~~~------------~~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 283 ------------------------LAGLTALTNLELNENQLEDIS------------PISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp ------------------------GTTCTTCSEEECCSSCCSCCG------------GGGGCTTCSEEECCSSCCSCCGG
T ss_pred ------------------------ccCCCccCeEEcCCCcccCch------------hhcCCCCCCEEECcCCcCCCchh
Confidence 122345666777777666543 14678899999999999998877
Q ss_pred hhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC--CCCcccceeecCCcccc
Q 041143 387 PSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP--EFHDTVKLVIDGNPLLV 451 (973)
Q Consensus 387 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~~~~~~~~N~~~c 451 (973)
+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++.+| .+..+..+.+.+|++..
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 78999999999999999865 578999999999999999999887 23455668899998865
No 291
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.6e-29 Score=288.30 Aligned_cols=318 Identities=16% Similarity=0.126 Sum_probs=229.2
Q ss_pred CCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 66 GNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..+++.|+|++|++++. | .|+.+++|++|+|++|+|++. | +..+++|++|+|++|+|+.++ |.++++|++|+|
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence 35799999999999975 4 799999999999999999986 3 889999999999999999985 889999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDA 225 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~ 225 (973)
++|++++ +| ++.+++|++|+|++|+|++. + ++++++|++|++++|+..+.++ +.. +.++..|+...+
T Consensus 114 ~~N~l~~-----l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~-l~~L~~L~ls~n 180 (457)
T 3bz5_A 114 DTNKLTK-----LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTP-QTQLTTLDCSFN 180 (457)
T ss_dssp CSSCCSC-----CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTT-CTTCCEEECCSS
T ss_pred CCCcCCe-----ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--ccc-CCcCCEEECCCC
Confidence 9999986 44 88999999999999999974 3 8899999999999996655653 221 222333333333
Q ss_pred CCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 226 GGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 226 ~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
.....+ +..+++|+.|++++|++++. .+..+++|++|+|++|++++ +| +..+ +|+.|++++|.+++..+.
T Consensus 181 ~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 181 KITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred ccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 333222 66788888888888888854 37788888888888888887 45 5555 788888888888865332
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
.+. .+... .+ ....+..+++..|.. ... +.+..+++|+.|+|++|.+.+.
T Consensus 252 ~l~-~L~~L--~l---------------~~n~L~~L~l~~n~~---------~~~---~~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 252 TLS-KLTTL--HC---------------IQTDLLEIDLTHNTQ---------LIY---FQAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp TCT-TCCEE--EC---------------TTCCCSCCCCTTCTT---------CCE---EECTTCTTCCCCCCTTCTTCCE
T ss_pred HCC-CCCEE--ec---------------cCCCCCEEECCCCcc---------CCc---ccccccccCCEEECCCCcccce
Confidence 111 11000 00 001223333333321 111 1235678899999999998888
Q ss_pred cchh--------hhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCCCCcccceeecCCcc
Q 041143 385 LSPS--------IANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPEFHDTVKLVIDGNPL 449 (973)
Q Consensus 385 ~p~~--------~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~N~~ 449 (973)
+|.. +.++++|+.|+|++|+|++ ++ ++.+++|+.|||++|+|++ ++. +..+.+..|.+
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l~~---L~~L~l~~n~l 367 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-FSS---VGKIPALNNNF 367 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-CTT---GGGSSGGGTSE
T ss_pred eccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-ccc---cccccccCCcE
Confidence 7753 4556788999999999997 43 8899999999999999988 333 33444444443
No 292
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.4e-30 Score=282.83 Aligned_cols=278 Identities=21% Similarity=0.273 Sum_probs=158.5
Q ss_pred CCCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCC
Q 041143 51 DDPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTI 129 (973)
Q Consensus 51 ~d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i 129 (973)
++.|. |.|.+|.|+..+++ .+|..+. ++|++|+|++|+++..++ .|.++++|++|+|++|+++.+
T Consensus 2 P~~C~-C~~~~l~c~~~~l~-----------~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 2 PSRCS-CSGTEIRCNSKGLT-----------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp CTTCE-EETTEEECCSSCCS-----------SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred cCCCe-eCCCEEEcCCCCcc-----------cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc
Confidence 34564 35877777655443 3454332 466666666666665544 255566666666666665543
Q ss_pred C--ccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcc-hhccCCCCCCeEEccCCcCcccC
Q 041143 130 P--SDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLP-DFLGTLPSLAALKLSYNRLSGVI 206 (973)
Q Consensus 130 ~--~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~ 206 (973)
. +..+..+++|++|+|++|.++. +|..+..+++|++|+|++|++++..+ ..+..+++|++|+|++|++++..
T Consensus 68 ~~~~~~~~~~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 68 GCCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp EEEEHHHHSCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred cCcccccccccccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 2 2223345555555555555542 34444455555555555555543332 34444555555555555544333
Q ss_pred ChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc-CCCccccCCCCCCEEeCcCCcccccCcccccc
Q 041143 207 PASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG-SIPEDIGALSSLKDLNLNRNQLVGLIPKSLAN 285 (973)
Q Consensus 207 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 285 (973)
+..+ .++++|++|+|++|.+++ .+|..+..+++|++|+|++|++++..|..+.
T Consensus 143 ~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~- 196 (306)
T 2z66_A 143 NGIF-------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN- 196 (306)
T ss_dssp TTTT-------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred hhhc-------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-
Confidence 3322 234445555555554443 2444444444444444444444443333332
Q ss_pred cccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCcccccc
Q 041143 286 MELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSC 365 (973)
Q Consensus 286 l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~ 365 (973)
T Consensus 197 -------------------------------------------------------------------------------- 196 (306)
T 2z66_A 197 -------------------------------------------------------------------------------- 196 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcC-CCCeeeCCCCcCCCCCCC------CCc
Q 041143 366 TSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELK-SLRLLDVSDNNIKPPLPE------FHD 438 (973)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~g~~p~------~~~ 438 (973)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|+|++..|..+..++ +|++|+|++|++++..+. +.+
T Consensus 197 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 197 -SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp -TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred -CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 345677777777777777676788888899999999999888888888884 899999999999876431 223
Q ss_pred ccceeecCCccccCCC
Q 041143 439 TVKLVIDGNPLLVGGI 454 (973)
Q Consensus 439 ~~~~~~~~N~~~c~~~ 454 (973)
...+.++.|...|..+
T Consensus 276 ~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 276 QRQLLVEVERMECATP 291 (306)
T ss_dssp TGGGBSCGGGCBEEES
T ss_pred hhhhhccccccccCCc
Confidence 3345556677777643
No 293
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.1e-28 Score=287.30 Aligned_cols=305 Identities=26% Similarity=0.347 Sum_probs=245.6
Q ss_pred CCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 66 GNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..+++.|+|++|.+++..+ ++++++|++|+|++|.+++..+ +.++++|++|+|++|+++.++ .+..+++|++|++
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeec
Confidence 3579999999999997654 9999999999999999998765 999999999999999999986 3889999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDA 225 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~ 225 (973)
+ |.+.+ ++ .+.++++|+.|+|++|.+++. ..+..+++|++|++++|++++..| +. ....+..|....+
T Consensus 164 ~-~~~~~-----~~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n 231 (466)
T 1o6v_A 164 G-NQVTD-----LK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGN 231 (466)
T ss_dssp E-ESCCC-----CG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSS
T ss_pred C-CcccC-----ch-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCC
Confidence 6 55554 22 388889999999999998854 348889999999999999987655 21 1223333444433
Q ss_pred CCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 226 GGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 226 ~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
.... ...+..+++|+.|+|++|.+++..| +..+++|++|+|++|++++..+ +..+ +|+.|++++|.+++..|
T Consensus 232 ~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 232 QLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp CCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-
T ss_pred Cccc--chhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-
Confidence 3322 2467889999999999999996655 8999999999999999997655 6666 89999999999986433
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
...+..+..+++..|.+..++. +..+++|+.|++++|++++.
T Consensus 305 --------------------------~~~l~~L~~L~L~~n~l~~~~~------------~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 305 --------------------------ISNLKNLTYLTLYFNNISDISP------------VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp --------------------------GGGCTTCSEEECCSSCCSCCGG------------GGGCTTCCEEECCSSCCCCC
T ss_pred --------------------------hcCCCCCCEEECcCCcCCCchh------------hccCccCCEeECCCCccCCc
Confidence 1123456677777777665531 45788999999999999987
Q ss_pred cchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCCC
Q 041143 385 LSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPEF 436 (973)
Q Consensus 385 ~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~ 436 (973)
+.+.++++|+.|+|++|++++..| +..+++|+.|+|++|++++.+..+
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBCC
T ss_pred --hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchhh
Confidence 579999999999999999998887 899999999999999999965543
No 294
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2e-28 Score=273.93 Aligned_cols=282 Identities=23% Similarity=0.305 Sum_probs=217.4
Q ss_pred eCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEE
Q 041143 65 SGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLA 144 (973)
Q Consensus 65 ~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 144 (973)
...+++.|+|++|.+++. ++ |..+++|++|+|++|.++.. +.|.++++|++|+|++|+++.+++ +..+++|++|+
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 346899999999999864 44 99999999999999999974 679999999999999999999887 89999999999
Q ss_pred cccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccC
Q 041143 145 LDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQD 224 (973)
Q Consensus 145 Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~ 224 (973)
+++|.... .+..+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +
T Consensus 139 l~~n~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-------------- 195 (347)
T 4fmz_A 139 LGANHNLS-----DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L-------------- 195 (347)
T ss_dssp CTTCTTCC-----CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--G--------------
T ss_pred CCCCCCcc-----cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--c--------------
Confidence 99997664 34458999999999999999996554 8999999999999999984332 2
Q ss_pred CCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCC
Q 041143 225 AGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 225 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p 303 (973)
..+++|+.|++++|.+++..+ +..+++|++|+|++|++++..+ +..+ +|+.|++++|.+++. +
T Consensus 196 -----------~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 196 -----------ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp -----------GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G
T ss_pred -----------cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h
Confidence 236666666666666664333 6666666666666666665433 4444 566666666666531 1
Q ss_pred CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC
Q 041143 304 KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
. ...+..+..+++..|.+..++ .+..+++|+.|+|++|++.+
T Consensus 260 ~--------------------------~~~l~~L~~L~l~~n~l~~~~------------~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 260 A--------------------------VKDLTKLKMLNVGSNQISDIS------------VLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp G--------------------------GTTCTTCCEEECCSSCCCCCG------------GGGGCTTCSEEECCSSCCCG
T ss_pred h--------------------------HhcCCCcCEEEccCCccCCCh------------hhcCCCCCCEEECcCCcCCC
Confidence 1 011223444555555544432 24567899999999999999
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCC
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIK 430 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 430 (973)
..|..++.+++|+.|+|++|++++..| +..+++|+.||+++|.|+
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999999999997766 899999999999999986
No 295
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1e-28 Score=300.03 Aligned_cols=354 Identities=17% Similarity=0.183 Sum_probs=251.1
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|+|++|+|++..+.+|.+|++|++|+|++|+|++.++ .|.++++|++|+|++|+|+.+++..|.++++|++|+|
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 579999999999998888899999999999999999999887 6999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCC----eEEccCCcCcccCChhhhhh--------
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLA----ALKLSYNRLSGVIPASFGQS-------- 213 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~~-------- 213 (973)
++|+++.. .+|..+..+++|++|+|++|+|++..+..|..+.+++ .++++.|.++...+..+...
T Consensus 156 s~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 156 AHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp CSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred ccCccccC---CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 99999875 4788999999999999999999988888776655443 57777777654322211000
Q ss_pred -------HH-----------------------------------------------------------------H-----
Q 041143 214 -------LM-----------------------------------------------------------------Q----- 216 (973)
Q Consensus 214 -------~~-----------------------------------------------------------------~----- 216 (973)
.. .
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 00 0
Q ss_pred -----------------HHhhcccCC--CCCC-----------------CcchhhcCCccccEEEccCCcccc--CCCcc
Q 041143 217 -----------------ILWLNDQDA--GGMT-----------------GPIDVVAKMVSLTQLWLHGNQFTG--SIPED 258 (973)
Q Consensus 217 -----------------~~~l~~~~~--~~~~-----------------~~~~~~~~l~~L~~L~L~~N~l~g--~~p~~ 258 (973)
+..|....+ .... .....+..+++|+.|++++|.+.. ..+..
T Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 313 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccc
Confidence 000000000 0000 001122356788888888887752 23333
Q ss_pred ccC-----------------------CCCCCEEeCcCCcccccCc-cccccc-ccCeEEccCCcCcCCCCCCCCCCcccc
Q 041143 259 IGA-----------------------LSSLKDLNLNRNQLVGLIP-KSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYD 313 (973)
Q Consensus 259 ~~~-----------------------l~~L~~L~Ls~N~l~~~~p-~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~ 313 (973)
+.. +++|+.+++++|++....+ ..+..+ ++..++++.|.+.+..|..+...-.+.
T Consensus 393 ~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~ 472 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472 (635)
T ss_dssp HHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhh
Confidence 334 4444444554444443333 233334 566667777776665555433322222
Q ss_pred cCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCcc
Q 041143 314 SNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLD 393 (973)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 393 (973)
..++.+........++....+..+..++++.|.+..++.. .+..+++|++|+|++|+|++..|..|.+++
T Consensus 473 ~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~----------~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT----------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT----------TTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred hhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH----------HHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 2222222111112233334456677888888888776433 467789999999999999999999999999
Q ss_pred ccceEEccCCccccccCccccCc-CCCCeeeCCCCcCCCCC
Q 041143 394 SLIEIRLGKNSISGTVPNNFTEL-KSLRLLDVSDNNIKPPL 433 (973)
Q Consensus 394 ~L~~L~L~~N~l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~~ 433 (973)
+|+.|+|++|+|++..|..|..+ ++|++|+|++|++++.-
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999998 68999999999999854
No 296
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.9e-29 Score=273.35 Aligned_cols=224 Identities=22% Similarity=0.424 Sum_probs=171.9
Q ss_pred CeEEEEEecc-cCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEE
Q 041143 67 NRVTQIQVQN-LGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLA 144 (973)
Q Consensus 67 ~~v~~L~L~~-~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~ 144 (973)
..++.|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+| .|.+ +++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------------------------l~~L~~L~ 131 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------------------------IKTLVTLD 131 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------------------------CTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------------------------CCCCCEEe
Confidence 4678889985 88998999999999999999888888887665 3444 44555555
Q ss_pred cccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCC-CCCeEEccCCcCcccCChhhhhhHHHHHhhccc
Q 041143 145 LDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLP-SLAALKLSYNRLSGVIPASFGQSLMQILWLNDQ 223 (973)
Q Consensus 145 Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~ 223 (973)
|++|++++. +|..+..+++|++|+|++|++++.+|..+..++ +|++|+|++|++++.+|..+..
T Consensus 132 Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~----------- 196 (313)
T 1ogq_A 132 FSYNALSGT----LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN----------- 196 (313)
T ss_dssp CCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-----------
T ss_pred CCCCccCCc----CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-----------
Confidence 555555543 777888889999999999999988898899888 8999999999998888887642
Q ss_pred CCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCC
Q 041143 224 DAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 224 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p 303 (973)
+. |+.|+|++|++++.+|..|..+++|+.|+|++|++++.+|. +..
T Consensus 197 --------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~------------------ 242 (313)
T 1ogq_A 197 --------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL------------------ 242 (313)
T ss_dssp --------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC------------------
T ss_pred --------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc------------------
Confidence 54 99999999999988888899999999999999999876654 322
Q ss_pred CCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCC
Q 041143 304 KFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTG 383 (973)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 383 (973)
+++|++|+|++|++++
T Consensus 243 ----------------------------------------------------------------l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 243 ----------------------------------------------------------------SKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ----------------------------------------------------------------CTTCCEEECCSSCCEE
T ss_pred ----------------------------------------------------------------cCCCCEEECcCCcccC
Confidence 1245566666666666
Q ss_pred ccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCc
Q 041143 384 TLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNN 428 (973)
Q Consensus 384 ~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~ 428 (973)
.+|..|..+++|+.|+|++|+|+|.+|.. ..+++|+.|++++|+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66667777777778888888777777765 666767666665543
No 297
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=281.53 Aligned_cols=245 Identities=23% Similarity=0.282 Sum_probs=181.3
Q ss_pred EEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCC
Q 041143 72 IQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPF 150 (973)
Q Consensus 72 L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 150 (973)
+++.+.+|+ .+|..+. ++|+.|+|++|+|++..+ .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|
T Consensus 48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 344445555 5676665 688999999999998776 789999999999999999999988899999999999999988
Q ss_pred CCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCC
Q 041143 151 NKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTG 230 (973)
Q Consensus 151 ~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 230 (973)
+.. .+..|..+++|++|+|++|+|+...+..|.++++|++|+|++|+..+.++..
T Consensus 125 ~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~--------------------- 179 (440)
T 3zyj_A 125 TTI----PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG--------------------- 179 (440)
T ss_dssp SSC----CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT---------------------
T ss_pred Cee----CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc---------------------
Confidence 863 3346888888888888888888777778888888888888885544344432
Q ss_pred cchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCc
Q 041143 231 PIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNV 310 (973)
Q Consensus 231 ~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~ 310 (973)
.|.++++|++|+|++|+++ .+| .+..+++|++|+|++|++++..|..|..+
T Consensus 180 ---~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------ 230 (440)
T 3zyj_A 180 ---AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL------------------------ 230 (440)
T ss_dssp ---TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTC------------------------
T ss_pred ---hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccC------------------------
Confidence 2346788888888888887 555 46777777777777777776655555443
Q ss_pred ccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhh
Q 041143 311 TYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIA 390 (973)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 390 (973)
++|+.|+|++|++.+..+..|.
T Consensus 231 ----------------------------------------------------------~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 231 ----------------------------------------------------------MHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp ----------------------------------------------------------TTCCEEECTTCCCCEECTTSST
T ss_pred ----------------------------------------------------------ccCCEEECCCCceeEEChhhhc
Confidence 3455555555555555555667
Q ss_pred CccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCC
Q 041143 391 NLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKP 431 (973)
Q Consensus 391 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 431 (973)
++++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77777777777777776666667777777777777777654
No 298
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.5e-28 Score=280.02 Aligned_cols=316 Identities=17% Similarity=0.122 Sum_probs=242.9
Q ss_pred ccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccC
Q 041143 76 NLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFG 155 (973)
Q Consensus 76 ~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~ 155 (973)
..+..+..+..++++++|++|+|++|.|++. |.+..+++|++|+|++|+|+.++ |..+++|++|+|++|++++
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~--- 99 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN--- 99 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC---
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce---
Confidence 3455566677899999999999999999986 58999999999999999999986 8899999999999999997
Q ss_pred CCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhh
Q 041143 156 WSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVV 235 (973)
Q Consensus 156 ~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (973)
++ ++++++|++|+|++|++++. + ++.+++|++|+|++|++++. + +. .+..+..|....+...... .+
T Consensus 100 --~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~-~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 100 --LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VS-HNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp --CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CT-TCTTCCEEECTTCSCCCCC--CC
T ss_pred --ee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cc-cCCcCCEEECCCCCccccc--cc
Confidence 43 88999999999999999974 4 89999999999999999974 3 22 1223334444444222222 36
Q ss_pred cCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCccccc
Q 041143 236 AKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDS 314 (973)
Q Consensus 236 ~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~ 314 (973)
..+++|++|+|++|++++ +| +..+++|+.|++++|++++. .+..+ +|+.|++++|++++ +|-
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip~---------- 229 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDV---------- 229 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CCC----------
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cCc----------
Confidence 778999999999999985 55 88889999999999999875 36666 79999999999987 441
Q ss_pred CcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccc
Q 041143 315 NSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDS 394 (973)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 394 (973)
..+..+..++++.|.+..++...... +..-.....+|+.|++++|.+.|.+| ++.+++
T Consensus 230 -----------------~~l~~L~~L~l~~N~l~~~~~~~l~~---L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~ 287 (457)
T 3bz5_A 230 -----------------TPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRK 287 (457)
T ss_dssp -----------------TTCTTCSEEECCSSCCSCCCCTTCTT---CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTT
T ss_pred -----------------cccCCCCEEEeeCCcCCCcCHHHCCC---CCEEeccCCCCCEEECCCCccCCccc--cccccc
Confidence 11234566677777777664221111 11001122467888999999999888 578999
Q ss_pred cceEEccCCccccccCcc--------ccCcCCCCeeeCCCCcCCCCC-CCCCcccceeecCCccc
Q 041143 395 LIEIRLGKNSISGTVPNN--------FTELKSLRLLDVSDNNIKPPL-PEFHDTVKLVIDGNPLL 450 (973)
Q Consensus 395 L~~L~L~~N~l~g~~p~~--------~~~l~~L~~L~Ls~N~l~g~~-p~~~~~~~~~~~~N~~~ 450 (973)
|+.|+|++|.+.|.+|.. +..+++|++|+|++|+|+|.. ..+.++..+++.+|.+.
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCC
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCCCC
Confidence 999999999988888753 566789999999999999951 13456677899999764
No 299
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.2e-28 Score=282.43 Aligned_cols=325 Identities=19% Similarity=0.212 Sum_probs=162.7
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCcc-------------ceeeccCCCCCCCCcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSEL-------------EFAYLDFNEFDTIPSD 132 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L-------------~~L~L~~N~l~~i~~~ 132 (973)
.++++|++++|++ |.+|++|++|++|++|+|++|.++|.+| .+.++++| ++|++++|+++.+|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 3566667777776 5667667777777777777777666555 45555443 5555555555554431
Q ss_pred c----------------cCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEE
Q 041143 133 F----------------FDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALK 196 (973)
Q Consensus 133 ~----------------f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 196 (973)
. -..+++|++|+|++|++++ +|.. .++|++|+|++|++++ +| .|+++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 0 0012445555555555543 2211 1577888888888875 56 478888888888
Q ss_pred ccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccc
Q 041143 197 LSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLV 276 (973)
Q Consensus 197 Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 276 (973)
+++|++++ +|..+. .+.+|+...+.....+ .+.++++|++|++++|++++ +|... ++|++|++++|.++
T Consensus 160 l~~N~l~~-lp~~~~----~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDLPP----SLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp CCSSCCSC-CCCCCT----TCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred CCCCcCcc-cCCCcc----cccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence 88888874 554432 2223333333222222 46677777777777777774 44332 46777777777777
Q ss_pred ccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcc---cccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCC
Q 041143 277 GLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVT---YDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPG 352 (973)
Q Consensus 277 ~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~ 352 (973)
.+|. +..+ +|+.|++++|++++ +|... ..+. +..+.+.+ .+. ....+..++++.|.+..++.
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~-~~L~~L~l~~N~l~~-------l~~---~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKT-LPDLP-PSLEALNVRDNYLTD-------LPE---LPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSS-CCSCC-TTCCEEECCSSCCSC-------CCC---CCTTCCEEECCSSCCSEESC
T ss_pred -cccc-cCCCCCCCEEECCCCcCCc-ccccc-cccCEEECCCCcccc-------cCc---ccCcCCEEECcCCccCcccC
Confidence 4553 5555 67777777777765 33321 1111 11111111 000 01233444444444433221
Q ss_pred CCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCc-cccceEEccCCccccccCccccCcCCCCeeeCCCCcCCC
Q 041143 353 NDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANL-DSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKP 431 (973)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 431 (973)
. .++|+.|++++|++.+. + .+ ++|+.|+|++|+|++ +|.. +++|++|+|++|++++
T Consensus 295 ~--------------~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 295 L--------------PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE 351 (454)
T ss_dssp C--------------CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred c--------------CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc
Confidence 0 13555566666655541 1 22 366677777777664 5543 4666777777777765
Q ss_pred CCCCCCcccceeecCCccc
Q 041143 432 PLPEFHDTVKLVIDGNPLL 450 (973)
Q Consensus 432 ~~p~~~~~~~~~~~~N~~~ 450 (973)
.++.+.++..+++.+|++.
T Consensus 352 lp~~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 352 VPELPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCCCCTTCCEEECCSSCCS
T ss_pred ccchhhhccEEECCCCCCC
Confidence 4433345555666666654
No 300
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.8e-28 Score=281.67 Aligned_cols=244 Identities=23% Similarity=0.267 Sum_probs=182.5
Q ss_pred ecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCC
Q 041143 74 VQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNK 152 (973)
Q Consensus 74 L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 152 (973)
+.+.+++ .+|..+. ++|++|+|++|+|++..+ .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.
T Consensus 61 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 61 CTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp CCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred ECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc
Confidence 3334444 4666554 688999999999999876 68899999999999999999988889999999999999999886
Q ss_pred ccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcc
Q 041143 153 TFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPI 232 (973)
Q Consensus 153 ~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (973)
. .+..|..+++|++|+|++|+|+...+..|.++++|++|+|++|+..+.++..
T Consensus 138 ~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------------------- 190 (452)
T 3zyi_A 138 I----PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG----------------------- 190 (452)
T ss_dssp C----CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----------------------
T ss_pred c----ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-----------------------
Confidence 3 3455788888899999888888777778888888888888885443344432
Q ss_pred hhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCccc
Q 041143 233 DVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTY 312 (973)
Q Consensus 233 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~ 312 (973)
.|.++++|++|+|++|++++ +| .+..+++|++|+|++|++++..|..|..+
T Consensus 191 -~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------------------------- 241 (452)
T 3zyi_A 191 -AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL-------------------------- 241 (452)
T ss_dssp -TTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTC--------------------------
T ss_pred -hccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCc--------------------------
Confidence 23467888888888888883 44 47777788888888887776666555543
Q ss_pred ccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCc
Q 041143 313 DSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANL 392 (973)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 392 (973)
++|+.|+|++|++.+..|..|.++
T Consensus 242 --------------------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 242 --------------------------------------------------------SSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp --------------------------------------------------------TTCCEEECTTSCCCEECTTTTTTC
T ss_pred --------------------------------------------------------cCCCEEEeCCCcCceECHHHhcCC
Confidence 345555555555555556667777
Q ss_pred cccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCC
Q 041143 393 DSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 393 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
++|+.|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 7888888888888766666777788888888888777654
No 301
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-30 Score=301.94 Aligned_cols=217 Identities=20% Similarity=0.200 Sum_probs=160.7
Q ss_pred CCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCC
Q 041143 112 GLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPS 191 (973)
Q Consensus 112 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 191 (973)
.+++|++|+|++|.|+.+++..|..+++|++|+|++|.+++. .| +..+++|++|+|++|.|++..+ .++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET----LD--LESLSTLRTLDLNNNYVQELLV-----GPS 100 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE----EE--CTTCTTCCEEECCSSEEEEEEE-----CTT
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC----cc--cccCCCCCEEEecCCcCCCCCC-----CCC
Confidence 344677777777777777777777777777777777777653 22 6777777777777777774332 277
Q ss_pred CCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCc
Q 041143 192 LAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLN 271 (973)
Q Consensus 192 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls 271 (973)
|++|+|++|+|++..+. .+++|+.|+|++|.|++..|..++.+++|++|+|+
T Consensus 101 L~~L~L~~N~l~~~~~~----------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 101 IETLHAANNNISRVSCS----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CCEEECCSSCCCCEEEC----------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred cCEEECcCCcCCCCCcc----------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 78888888877754332 25677888888888887777777778888888888
Q ss_pred CCcccccCccccc-cc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCC
Q 041143 272 RNQLVGLIPKSLA-NM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQ 349 (973)
Q Consensus 272 ~N~l~~~~p~~~~-~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 349 (973)
+|.+++.+|..+. .+ +|+.|+|++|.|++..+.
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--------------------------------------------- 187 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--------------------------------------------- 187 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC---------------------------------------------
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCcccccccc---------------------------------------------
Confidence 8888877777665 44 688888888877653211
Q ss_pred CCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcC
Q 041143 350 WPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNI 429 (973)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 429 (973)
..+++|+.|+|++|.+++..| .+..+++|+.|+|++|+|++ +|..+..+++|+.|+|++|.+
T Consensus 188 ----------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 188 ----------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ----------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ----------------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 135678899999999987555 48889999999999999984 788899999999999999988
Q ss_pred C
Q 041143 430 K 430 (973)
Q Consensus 430 ~ 430 (973)
.
T Consensus 250 ~ 250 (487)
T 3oja_A 250 H 250 (487)
T ss_dssp C
T ss_pred c
Confidence 7
No 302
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=2.8e-29 Score=296.68 Aligned_cols=187 Identities=19% Similarity=0.160 Sum_probs=131.5
Q ss_pred cccccCccEEEEEE-ECCCCEEEEEEeecCCC--------ChHHHHHHHHHHHHHHhc-CCCceeeeeeEEEeCCeEEEE
Q 041143 632 ELGRGGFGTVYKGE-LEDGTKIAVKRMEAGVT--------TTKALDEFQSEIAVLSKV-RHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 632 ~lG~G~fg~Vy~~~-~~~g~~vavK~~~~~~~--------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lV 701 (973)
..+.|++|.++.++ .-.|+.+|||++..... .....++|.+|+++|+++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 46677777777653 33588999999965421 123456799999999999 699999999999999999999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||++||+|.+++.. ..+++.. +|+.||+.||+|+| ++|||||||||+|||+++++++||+|||+|+..
T Consensus 321 MEyv~G~~L~d~i~~-----~~~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~ 389 (569)
T 4azs_A 321 MEKLPGRLLSDMLAA-----GEEIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTT 389 (569)
T ss_dssp EECCCSEEHHHHHHT-----TCCCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESC
T ss_pred EecCCCCcHHHHHHh-----CCCCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeC
Confidence 999999999999965 2345543 58999999999999 899999999999999999999999999999866
Q ss_pred CCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCC
Q 041143 782 PDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAA 831 (973)
Q Consensus 782 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p 831 (973)
..... .....+||++|||||++.+ .+..++|+||+|++++++.++..+
T Consensus 390 ~~~~~-~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 390 PQDCS-WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp C---C-CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CCCCc-cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 54322 3445689999999998865 567789999999999888766443
No 303
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2e-27 Score=274.33 Aligned_cols=320 Identities=20% Similarity=0.271 Sum_probs=188.8
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
.+++.|+|++|.+++ +|.. +++|++|+|++|++++... + .++|++|+|++|+++.+| .|.++++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~--~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C--CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence 467888888888886 5643 3778888888888887432 1 168999999999999887 38899999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
+|++++ +|..+ .+|++|+|++|++++ +| .++++++|++|++++|++++ +|.... .+..|....+.
T Consensus 162 ~N~l~~-----lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~----~L~~L~l~~n~ 226 (454)
T 1jl5_A 162 NNSLKK-----LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLPL----SLESIVAGNNI 226 (454)
T ss_dssp SSCCSC-----CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCCT----TCCEEECCSSC
T ss_pred CCcCcc-----cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCcC----cccEEECcCCc
Confidence 999886 55443 488999999999986 55 58899999999999999985 444321 22333333333
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcC--CCCC
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMG--PIPK 304 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g--~~p~ 304 (973)
....+ .+.++++|++|++++|++++ +|.. +++|++|++++|++++ +|..+ .+|+.|++++|.+++ .+|.
T Consensus 227 l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~--~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 227 LEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP--QSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp CSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSEESCCCT
T ss_pred CCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc--CcCCEEECcCCccCcccCcCC
Confidence 33222 36778888888888888874 5543 3678888888888876 44433 267888888888876 3332
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
. ...+.+..+.+.+. + .....+..++++.|.+..++.. +++|++|+|++|++++
T Consensus 298 ~-L~~L~l~~N~l~~i-------~---~~~~~L~~L~Ls~N~l~~lp~~--------------~~~L~~L~L~~N~l~~- 351 (454)
T 1jl5_A 298 N-LYYLNASSNEIRSL-------C---DLPPSLEELNVSNNKLIELPAL--------------PPRLERLIASFNHLAE- 351 (454)
T ss_dssp T-CCEEECCSSCCSEE-------C---CCCTTCCEEECCSSCCSCCCCC--------------CTTCCEEECCSSCCSC-
T ss_pred c-CCEEECcCCcCCcc-------c---CCcCcCCEEECCCCcccccccc--------------CCcCCEEECCCCcccc-
Confidence 1 11122222211110 0 1113455556666665554321 3567777777777764
Q ss_pred cchhhhCccccceEEccCCcccc--ccCccccCc-------------CCCCeeeCCCCcCCC--CCCCCCcccceeecCC
Q 041143 385 LSPSIANLDSLIEIRLGKNSISG--TVPNNFTEL-------------KSLRLLDVSDNNIKP--PLPEFHDTVKLVIDGN 447 (973)
Q Consensus 385 ~p~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l-------------~~L~~L~Ls~N~l~g--~~p~~~~~~~~~~~~N 447 (973)
+|. .+++|+.|+|++|++++ .+|..+..+ ++|+.|||++|+++| .+|. .+..+.+.+|
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~--sl~~L~~~~~ 426 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE--SVEDLRMNSE 426 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh--hHhheeCcCc
Confidence 444 35677777777777776 667776666 667777777777776 4442 2334444444
Q ss_pred ccc
Q 041143 448 PLL 450 (973)
Q Consensus 448 ~~~ 450 (973)
.+.
T Consensus 427 ~~~ 429 (454)
T 1jl5_A 427 RVV 429 (454)
T ss_dssp ---
T ss_pred ccC
Confidence 443
No 304
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.5e-28 Score=265.33 Aligned_cols=228 Identities=19% Similarity=0.235 Sum_probs=160.0
Q ss_pred CccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCC
Q 041143 114 SELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLA 193 (973)
Q Consensus 114 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 193 (973)
++++.|+|++|+|+.+|.. +..+++|++|+|++|.++. +|..++++++|++|+|++|+++ .+|..++++++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 3444555555555555444 2335666666666666652 6666777777777777777777 6677777777777
Q ss_pred eEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCC
Q 041143 194 ALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRN 273 (973)
Q Consensus 194 ~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N 273 (973)
+|+|++|++.+.+|..+... .....|.++++|++|+|++|+|+ .+|..+..+++|++|+|++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred EEECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 77777777776777655310 00122445777777777777777 77777777777777777777
Q ss_pred cccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCC
Q 041143 274 QLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGN 353 (973)
Q Consensus 274 ~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~ 353 (973)
++++ +|..+.
T Consensus 217 ~l~~-l~~~l~--------------------------------------------------------------------- 226 (328)
T 4fcg_A 217 PLSA-LGPAIH--------------------------------------------------------------------- 226 (328)
T ss_dssp CCCC-CCGGGG---------------------------------------------------------------------
T ss_pred CCCc-Cchhhc---------------------------------------------------------------------
Confidence 7774 333333
Q ss_pred CCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCC
Q 041143 354 DPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPL 433 (973)
Q Consensus 354 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~ 433 (973)
.+++|++|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+.++++|++|+|++|++.+.+
T Consensus 227 -------------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 227 -------------HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp -------------GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred -------------cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 3456777788888888888889999999999999999999999999999999999999999999999
Q ss_pred CC-CCc---ccceeecCCc
Q 041143 434 PE-FHD---TVKLVIDGNP 448 (973)
Q Consensus 434 p~-~~~---~~~~~~~~N~ 448 (973)
|. +.+ +..+.+..|.
T Consensus 294 P~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp CGGGGGSCTTCEEECCGGG
T ss_pred cHHHhhccCceEEeCCHHH
Confidence 85 333 3345555443
No 305
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-27 Score=260.07 Aligned_cols=206 Identities=24% Similarity=0.354 Sum_probs=161.1
Q ss_pred EeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCcc
Q 041143 63 FCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVR 141 (973)
Q Consensus 63 ~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~ 141 (973)
.|.....+.+++++++++ .+|..+ .++|++|+|++|.+++.++ .|.++++|++|+|++|+|+.+.+..|.++++|+
T Consensus 7 ~C~~~~~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 83 (285)
T 1ozn_A 7 VCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83 (285)
T ss_dssp EEECSSSCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred eECCCCCeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCC
Confidence 376555567788888887 456544 4689999999999998776 588899999999999999988888888899999
Q ss_pred EEEcccCC-CCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhh
Q 041143 142 VLALDYNP-FNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWL 220 (973)
Q Consensus 142 ~L~Ls~N~-l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l 220 (973)
+|+|++|+ +... .|..+..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+
T Consensus 84 ~L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------- 149 (285)
T 1ozn_A 84 QLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF---------- 149 (285)
T ss_dssp EEECCSCTTCCCC----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------
T ss_pred EEeCCCCCCcccc----CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh----------
Confidence 99999887 6653 46778888888888888888888778888888888888888888875444333
Q ss_pred cccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCc
Q 041143 221 NDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLM 299 (973)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~ 299 (973)
.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..+..+ +|+.|++++|.++
T Consensus 150 ---------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 150 ---------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ---------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ---------------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 357888888888888886656668888888888888888887777777665 5666666666665
Q ss_pred C
Q 041143 300 G 300 (973)
Q Consensus 300 g 300 (973)
+
T Consensus 215 ~ 215 (285)
T 1ozn_A 215 A 215 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 306
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1e-28 Score=271.46 Aligned_cols=251 Identities=20% Similarity=0.219 Sum_probs=161.7
Q ss_pred EEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCC-CCCC-CC-------CCCccceeeccCCCCCC-CCc
Q 041143 62 VFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNG-KLPT-FS-------GLSELEFAYLDFNEFDT-IPS 131 (973)
Q Consensus 62 v~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~-------~l~~L~~L~L~~N~l~~-i~~ 131 (973)
+.|...+++.|++++|.+ .+|..+... |+.|+|++|.++. .+|. +. ++++|++|+|++|+|+. +|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 556666777777788877 667666655 7778888888743 4442 22 57777777777777774 444
Q ss_pred ccc-CCCCCccEEEcccCCCCCccCCCCCcccccc-----cccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc
Q 041143 132 DFF-DGLSSVRVLALDYNPFNKTFGWSIPDSLANS-----VQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV 205 (973)
Q Consensus 132 ~~f-~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (973)
..| ..+++|++|+|++|++++ +|..+..+ ++|++|+|++|+|++..|..|+++++|++|+|++|++.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWAT-----RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSS-----SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred HHHHhcCCCccEEEccCCCCcc-----hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 433 777777777777777775 46666666 7777777777777776667777777777777777776654
Q ss_pred CC--hhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc--CCC-ccccCCCCCCEEeCcCCcccccCc
Q 041143 206 IP--ASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG--SIP-EDIGALSSLKDLNLNRNQLVGLIP 280 (973)
Q Consensus 206 ~p--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p 280 (973)
++ ..+ .+.++++|++|+|++|+|++ .++ ..+..+++|++|+|++|++++.+|
T Consensus 189 ~~~~~~~-----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 189 RGLISAL-----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHHHS-----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred hHHHHHH-----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 21 111 12356677777777777662 122 223455666666666666665443
Q ss_pred c-cccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCC
Q 041143 281 K-SLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGP 359 (973)
Q Consensus 281 ~-~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~ 359 (973)
. .+.
T Consensus 246 ~~~~~--------------------------------------------------------------------------- 250 (312)
T 1wwl_A 246 APSCD--------------------------------------------------------------------------- 250 (312)
T ss_dssp CSCCC---------------------------------------------------------------------------
T ss_pred hhhhh---------------------------------------------------------------------------
Confidence 1 222
Q ss_pred ccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCC
Q 041143 360 WLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKP 431 (973)
Q Consensus 360 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 431 (973)
.+++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..+++|++|+|++|+|++
T Consensus 251 -------~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 -------WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -------CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -------hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2345566666666665 4555554 6777777777777754 55 7777778888888887765
No 307
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.6e-27 Score=267.19 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=228.8
Q ss_pred cccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCe
Q 041143 91 TKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTN 170 (973)
Q Consensus 91 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~ 170 (973)
+.....++++|.++.++..+. ++|++|+|++|+|+.+++..|.++++|++|+|++|++++. .|..|.++++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 104 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI----EEDSFSSLGSLEH 104 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCE
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc----CHhhcCCCCCCCE
Confidence 344457899999998877554 5899999999999999999999999999999999999974 5678999999999
Q ss_pred eecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC-
Q 041143 171 LSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN- 249 (973)
Q Consensus 171 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N- 249 (973)
|+|++|+|++..+..|.++++|++|+|++|+++ .+|.. ..|.++++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~-----------------------~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET-----------------------SLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS-----------------------CSCTTCTTCCEEEEEESS
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch-----------------------hhhccCCCCcEEECCCCc
Confidence 999999999776677999999999999999998 44430 12356999999999999
Q ss_pred ccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCC
Q 041143 250 QFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAP 328 (973)
Q Consensus 250 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (973)
.+++..|..|..+++|++|++++|++++..|..+..+ +|++|++++|.+.. +|..
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~----------------------- 216 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEI----------------------- 216 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHH-----------------------
T ss_pred cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhh-----------------------
Confidence 5776667889999999999999999999999999988 89999999999852 2210
Q ss_pred cchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhh---CccccceEEccCCcc
Q 041143 329 DVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIA---NLDSLIEIRLGKNSI 405 (973)
Q Consensus 329 ~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l 405 (973)
.+..+++|+.|+|++|++++..+..+. ....++.++|++|.+
T Consensus 217 -----------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 217 -----------------------------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp -----------------------------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred -----------------------------------hhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 112356899999999999987766544 466788899999998
Q ss_pred cc----ccCccccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCccccCC
Q 041143 406 SG----TVPNNFTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 406 ~g----~~p~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~ 453 (973)
++ .+|..+..+++|+.|||++|+|+..++. +.++..+++.+|++.|..
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 87 5888899999999999999999966554 345667999999999864
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.6e-26 Score=268.13 Aligned_cols=247 Identities=21% Similarity=0.206 Sum_probs=177.7
Q ss_pred cceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeee
Q 041143 93 LYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLS 172 (973)
Q Consensus 93 L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~ 172 (973)
...++.+++.++.++..+. ++|++|+|++|+|+.+++..|.++++|++|+|++|+|++. .+..|.++++|++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI----EVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEE
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc----ChhhccCcccCCEEE
Confidence 3457777777776555443 5677777777777777777777777777777777777654 445666777777777
Q ss_pred cccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC-cc
Q 041143 173 LINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN-QF 251 (973)
Q Consensus 173 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l 251 (973)
|++|+|++..+..|.++++|++|+|++|+++...+..| .++++|+.|+|++| .+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------------------~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF-------------------------NRVPSLMRLDLGELKKL 184 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT-------------------------TTCTTCCEEECCCCTTC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH-------------------------hcCCcccEEeCCCCCCc
Confidence 77777776656666677777777777777663333222 34666666666663 33
Q ss_pred ccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcch
Q 041143 252 TGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVN 331 (973)
Q Consensus 252 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (973)
+...+..|..+++|++|+|++|++++. | .
T Consensus 185 ~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-----------------------~--------------------------- 213 (452)
T 3zyi_A 185 EYISEGAFEGLFNLKYLNLGMCNIKDM-P-----------------------N--------------------------- 213 (452)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSSC-C-----------------------C---------------------------
T ss_pred cccChhhccCCCCCCEEECCCCccccc-c-----------------------c---------------------------
Confidence 322223456666666666666655532 1 1
Q ss_pred hhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCc
Q 041143 332 VLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPN 411 (973)
Q Consensus 332 ~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 411 (973)
+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|.
T Consensus 214 ---------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 214 ---------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp ---------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred ---------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence 12346788999999999999999999999999999999999999999
Q ss_pred cccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCccccCCC
Q 041143 412 NFTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 412 ~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~~ 454 (973)
.|..+++|+.|||++|+|++.++. +.++..+++.+|||.|...
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999988775 3566779999999999753
No 309
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.3e-27 Score=279.63 Aligned_cols=282 Identities=23% Similarity=0.321 Sum_probs=221.4
Q ss_pred CCCCCCCCCCCCCCCcCeEE--------eeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCc
Q 041143 44 LKWPANGDDPCGPPPWPHVF--------CSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSE 115 (973)
Q Consensus 44 ~~w~~~~~d~C~~~~w~gv~--------C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 115 (973)
..|.. +.+||. |.|.. |....++.|+|++++|+ .+|..+. ++|++|+|++|+|+.+++ .+++
T Consensus 13 ~~W~~-~~~~~~---~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~ 82 (622)
T 3g06_A 13 SAWRR-AAPAEE---SRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPE 82 (622)
T ss_dssp HHHHH-TCCGGG---HHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTT
T ss_pred HHHHh-cCCcch---hccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCC
Confidence 34532 456776 86643 44457999999999999 7888776 899999999999997655 6789
Q ss_pred cceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeE
Q 041143 116 LEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAAL 195 (973)
Q Consensus 116 L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 195 (973)
|++|+|++|+|+.+|. .+++|++|+|++|++++ +|. .+++|+.|+|++|+|++ +|.. +++|++|
T Consensus 83 L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-----l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 83 LRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTH-----LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCC-----CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred CCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCC-----CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 9999999999999987 78999999999999996 565 56889999999999995 5543 5999999
Q ss_pred EccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcc
Q 041143 196 KLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQL 275 (973)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 275 (973)
+|++|++++ +|.. +.+|+.|+|++|+|+ .+| ..+++|+.|+|++|+|
T Consensus 147 ~Ls~N~l~~-l~~~----------------------------~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 147 SVSDNQLAS-LPAL----------------------------PSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp ECCSSCCSC-CCCC----------------------------CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred ECcCCcCCC-cCCc----------------------------cCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCC
Confidence 999999984 4432 467888888888888 466 4467888888888888
Q ss_pred cccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCC
Q 041143 276 VGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDP 355 (973)
Q Consensus 276 ~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~ 355 (973)
++ +|..+ .+|+.|++++|.|+. +|.. +..+..++++.|.+..++
T Consensus 194 ~~-l~~~~--~~L~~L~L~~N~l~~-l~~~----------------------------~~~L~~L~Ls~N~L~~lp---- 237 (622)
T 3g06_A 194 AS-LPTLP--SELYKLWAYNNRLTS-LPAL----------------------------PSGLKELIVSGNRLTSLP---- 237 (622)
T ss_dssp SC-CCCCC--TTCCEEECCSSCCSS-CCCC----------------------------CTTCCEEECCSSCCSCCC----
T ss_pred CC-CCCcc--chhhEEECcCCcccc-cCCC----------------------------CCCCCEEEccCCccCcCC----
Confidence 85 44332 267888888888763 3321 123455666666666654
Q ss_pred CCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCCC
Q 041143 356 CQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLPE 435 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 435 (973)
..+++|+.|+|++|+|+. +|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|+|++.+|.
T Consensus 238 ----------~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 ----------VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ----------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ----------CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 234689999999999985 555 6788999999999999 8899999999999999999999988775
No 310
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.5e-27 Score=255.73 Aligned_cols=249 Identities=19% Similarity=0.209 Sum_probs=188.8
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+.++++++.++.++..+. ++|++|+|++|+|+.++..+|.++++|++|+|++|+++... .++..+..+++|++|+|
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--CCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE--EEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc--CcccccccccccCEEEC
Confidence 457778888877665443 57888888888888888888888888888888888877420 12456667778888888
Q ss_pred ccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc
Q 041143 174 INCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG 253 (973)
Q Consensus 174 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g 253 (973)
++|.++ .+|..+..+++|++|+|++|++++..+.. .+.++++|++|+|++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS------------------------VFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTT------------------------TTTTCTTCCEEECTTSCCEE
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccch------------------------hhhhccCCCEEECCCCcCCc
Confidence 888877 45666777888888888888777433311 13457777777777777777
Q ss_pred CCCccccCCCCCCEEeCcCCcccc-cCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchh
Q 041143 254 SIPEDIGALSSLKDLNLNRNQLVG-LIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNV 332 (973)
Q Consensus 254 ~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (973)
..|..+..+++|++|+|++|.+++ .+|..+
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------------- 171 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------------------------------------------- 171 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCC-------------------------------------------------
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHH-------------------------------------------------
Confidence 677777777777777777777664 223222
Q ss_pred hhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCcc
Q 041143 333 LLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNN 412 (973)
Q Consensus 333 ~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~ 412 (973)
..+++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..
T Consensus 172 ---------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 172 ---------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp ---------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred ---------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 23457888888888888888889999999999999999999887878
Q ss_pred ccCcCCCCeeeCCCCcCCCCCCC----C-CcccceeecCCccccCC
Q 041143 413 FTELKSLRLLDVSDNNIKPPLPE----F-HDTVKLVIDGNPLLVGG 453 (973)
Q Consensus 413 ~~~l~~L~~L~Ls~N~l~g~~p~----~-~~~~~~~~~~N~~~c~~ 453 (973)
|..+++|++|||++|++++.+|. + .++..+++.+|++.|..
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99999999999999999998774 2 35677999999998863
No 311
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=267.03 Aligned_cols=247 Identities=21% Similarity=0.224 Sum_probs=192.8
Q ss_pred cceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeee
Q 041143 93 LYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLS 172 (973)
Q Consensus 93 L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~ 172 (973)
...++.+++.++.++..+. ++++.|+|++|+|+.+++..|.++++|++|+|++|+|+.. .+..|.++++|++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI----EIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE----CGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc----ChhhccCCccCCEEE
Confidence 3568888888887766554 6788888888888888888888888888888888888864 446777888888888
Q ss_pred cccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC-cc
Q 041143 173 LINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN-QF 251 (973)
Q Consensus 173 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l 251 (973)
|++|+|+...+..|..+++|++|+|++|+++...+..| .++++|++|+|++| .+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-------------------------~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF-------------------------NRIPSLRRLDLGELKRL 173 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT-------------------------TTCTTCCEEECCCCTTC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh-------------------------hhCcccCEeCCCCCCCc
Confidence 88888886666678888888888888888874433333 35777888888774 34
Q ss_pred ccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcch
Q 041143 252 TGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVN 331 (973)
Q Consensus 252 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (973)
+...+..|.++++|++|+|++|+++. +|.
T Consensus 174 ~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-------------------------------------------------- 202 (440)
T 3zyj_A 174 SYISEGAFEGLSNLRYLNLAMCNLRE-IPN-------------------------------------------------- 202 (440)
T ss_dssp CEECTTTTTTCSSCCEEECTTSCCSS-CCC--------------------------------------------------
T ss_pred ceeCcchhhcccccCeecCCCCcCcc-ccc--------------------------------------------------
Confidence 42333356777777777777776662 221
Q ss_pred hhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCc
Q 041143 332 VLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPN 411 (973)
Q Consensus 332 ~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 411 (973)
+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+.
T Consensus 203 ---------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 203 ---------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp ---------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ---------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 12345788889999999988899999999999999999999999999
Q ss_pred cccCcCCCCeeeCCCCcCCCCCCC----CCcccceeecCCccccCCC
Q 041143 412 NFTELKSLRLLDVSDNNIKPPLPE----FHDTVKLVIDGNPLLVGGI 454 (973)
Q Consensus 412 ~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~~~~~~~~N~~~c~~~ 454 (973)
.|.++++|+.|||++|+|++.++. +.++..+++.+|||.|...
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999999999999999999988775 3566779999999999753
No 312
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-26 Score=251.22 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=121.1
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+.++++++.++.++..+ .++|++|+|++|+|+.+++..|..+++|++|+|++|++++. .|..|.++++|++|+|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEEeC
Confidence 56778888777665433 35778888888888877777777777888888887777763 4667777777777777
Q ss_pred cccc-ccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccc
Q 041143 174 INCN-LVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFT 252 (973)
Q Consensus 174 ~~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 252 (973)
++|. +....+..|..+++|++|+|++|++++..|..+ .++++|++|+|++|+++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-------------------------RGLAALQYLYLQDNALQ 142 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh-------------------------hCCcCCCEEECCCCccc
Confidence 7776 665556777777777777777777775545443 34777777777777777
Q ss_pred cCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcC
Q 041143 253 GSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMG 300 (973)
Q Consensus 253 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g 300 (973)
+..+..|..+++|++|+|++|++++..+..+..+ +|+.|++++|.+++
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 5555567777777777777777775544445444 45555555554443
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.3e-28 Score=267.20 Aligned_cols=217 Identities=20% Similarity=0.205 Sum_probs=119.9
Q ss_pred CCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCC
Q 041143 112 GLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPS 191 (973)
Q Consensus 112 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 191 (973)
.+++|++|+|++|+|+.+++..|.++++|++|+|++|++++. ++ +..+++|++|+|++|+|++.. ..++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LD-LESLSTLRTLDLNNNYVQELL-----VGPS 100 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-----EE-ETTCTTCCEEECCSSEEEEEE-----ECTT
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-----hh-hhhcCCCCEEECcCCcccccc-----CCCC
Confidence 344555555555555555555555555555555555555532 11 555555555555555555322 2255
Q ss_pred CCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCc
Q 041143 192 LAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLN 271 (973)
Q Consensus 192 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls 271 (973)
|++|+|++|++++..+. .+++|++|+|++|++++..|..+..+++|++|+|+
T Consensus 101 L~~L~l~~n~l~~~~~~----------------------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 101 IETLHAANNNISRVSCS----------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp CCEEECCSSCCSEEEEC----------------------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred cCEEECCCCccCCcCcc----------------------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence 55666666655533221 13455566666666655445555555566666666
Q ss_pred CCcccccCccccc-cc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCC
Q 041143 272 RNQLVGLIPKSLA-NM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQ 349 (973)
Q Consensus 272 ~N~l~~~~p~~~~-~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~ 349 (973)
+|.+++..+..+. .+ +|+.|+|++|.|++. |.
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~--------------------------------------------- 186 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG--------------------------------------------- 186 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC---------------------------------------------
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc---------------------------------------------
Confidence 6666555444443 23 566666666655432 11
Q ss_pred CCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcC
Q 041143 350 WPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNI 429 (973)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 429 (973)
...+++|+.|+|++|++++..+ .+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++
T Consensus 187 ---------------~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 187 ---------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ---------------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ---------------ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 0123466666666666665433 3666677777777777776 4666666777777777777777
Q ss_pred C
Q 041143 430 K 430 (973)
Q Consensus 430 ~ 430 (973)
+
T Consensus 250 ~ 250 (317)
T 3o53_A 250 H 250 (317)
T ss_dssp B
T ss_pred c
Confidence 6
No 314
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-25 Score=240.17 Aligned_cols=216 Identities=26% Similarity=0.370 Sum_probs=191.6
Q ss_pred CCCCCCCCcCeEEeeC-CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCC
Q 041143 51 DDPCGPPPWPHVFCSG-NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDT 128 (973)
Q Consensus 51 ~d~C~~~~w~gv~C~~-~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 128 (973)
.|+|. |.|+.|+- ..++.+++++++++ .+|..+. ++|++|+|++|+|++.++ .|.++++|++|+|++|+|+.
T Consensus 2 ~~~C~---~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 2 EALCK---KDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp CCCBG---GGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC
T ss_pred CccCC---CCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe
Confidence 47887 99999863 45778999999999 5777665 689999999999999887 79999999999999999999
Q ss_pred CCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCCh
Q 041143 129 IPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPA 208 (973)
Q Consensus 129 i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 208 (973)
+++..|.++++|++|+|++|+++.. .+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 9999999999999999999999974 445678999999999999999998888999999999999999999954443
Q ss_pred hhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-c
Q 041143 209 SFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-E 287 (973)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~ 287 (973)
.| ..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+ +
T Consensus 152 ~~-------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 152 VF-------------------------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TT-------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred Hc-------------------------cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 33 469999999999999997777789999999999999999998777778877 8
Q ss_pred cCeEEccCCcCcCC
Q 041143 288 LDNLVLNNNLLMGP 301 (973)
Q Consensus 288 L~~L~l~~N~l~g~ 301 (973)
|+.|+|++|.+...
T Consensus 207 L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 207 LKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCBCCS
T ss_pred CCEEEecCCCeeCC
Confidence 99999999998743
No 315
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.1e-27 Score=258.74 Aligned_cols=249 Identities=22% Similarity=0.272 Sum_probs=187.0
Q ss_pred CCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccc-------cccccCeeecccccccCCcch
Q 041143 112 GLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLA-------NSVQLTNLSLINCNLVGPLPD 184 (973)
Q Consensus 112 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~-------~l~~L~~L~L~~N~l~~~~p~ 184 (973)
+.++|++|++++|.+ .+|...... |+.|+|++|++... .+|..+. ++++|++|+|++|++++.+|.
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 344555566666666 555443322 66667777776432 3565555 688899999999999888888
Q ss_pred hc--cCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCC
Q 041143 185 FL--GTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGAL 262 (973)
Q Consensus 185 ~l--~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 262 (973)
.+ ..+++|++|+|++|++++. |..+.... ...+++|++|+|++|++++..|..|..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~--------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQ--------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH--------------------TTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHH--------------------HhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 76 8899999999999999866 76654300 0013889999999999998777899999
Q ss_pred CCCCEEeCcCCccccc--Ccccc--ccc-ccCeEEccCCcCcCC--CCCCCCCCcccccCcccCCCCCcccCCcchhhhh
Q 041143 263 SSLKDLNLNRNQLVGL--IPKSL--ANM-ELDNLVLNNNLLMGP--IPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLD 335 (973)
Q Consensus 263 ~~L~~L~Ls~N~l~~~--~p~~~--~~l-~L~~L~l~~N~l~g~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (973)
++|++|+|++|++.+. .|..+ ..+ +|++|+|++|.|++. ++.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------------- 221 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS------------------------------- 221 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH-------------------------------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH-------------------------------
Confidence 9999999999998765 23333 555 799999999988731 110
Q ss_pred hccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccc-hhhhCccccceEEccCCccccccCcccc
Q 041143 336 FLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLS-PSIANLDSLIEIRLGKNSISGTVPNNFT 414 (973)
Q Consensus 336 ~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 414 (973)
..+..+++|+.|+|++|++.+.+| ..+..+++|+.|+|++|+|+ .+|..+.
T Consensus 222 ---------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 222 ---------------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp ---------------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred ---------------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 012345789999999999999886 56778999999999999999 8898887
Q ss_pred CcCCCCeeeCCCCcCCCCCCCC---CcccceeecCCccc
Q 041143 415 ELKSLRLLDVSDNNIKPPLPEF---HDTVKLVIDGNPLL 450 (973)
Q Consensus 415 ~l~~L~~L~Ls~N~l~g~~p~~---~~~~~~~~~~N~~~ 450 (973)
++|++|||++|+|++. |.+ .++..+++.+|++.
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred --CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 8999999999999987 544 45566899999875
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-26 Score=252.34 Aligned_cols=273 Identities=19% Similarity=0.178 Sum_probs=229.1
Q ss_pred EEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCc
Q 041143 62 VFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSV 140 (973)
Q Consensus 62 v~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 140 (973)
+...+.++..++++++.+...+...+..+++|++|+|++|+|++.+| .|.++++|++|+|++|+++.+++ |..+++|
T Consensus 5 l~~~g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L 82 (317)
T 3o53_A 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTL 82 (317)
T ss_dssp EEEETTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTC
T ss_pred ccCCcCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCC
Confidence 44455677888888888876666667788899999999999999887 79999999999999999998775 9999999
Q ss_pred cEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhh
Q 041143 141 RVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWL 220 (973)
Q Consensus 141 ~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l 220 (973)
++|+|++|++++. + .+++|++|++++|+|++..+. .+++|++|+|++|++++..+..+
T Consensus 83 ~~L~Ls~n~l~~l-----~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~---------- 140 (317)
T 3o53_A 83 RTLDLNNNYVQEL-----L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE---------- 140 (317)
T ss_dssp CEEECCSSEEEEE-----E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT----------
T ss_pred CEEECcCCccccc-----c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh----------
Confidence 9999999999853 3 348999999999999976554 46889999999999997656554
Q ss_pred cccCCCCCCCcchhhcCCccccEEEccCCccccCCCcccc-CCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCc
Q 041143 221 NDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIG-ALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLM 299 (973)
Q Consensus 221 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~ 299 (973)
..+++|++|+|++|.+++..+..+. .+++|++|+|++|++++. +......+|+.|+|++|.|+
T Consensus 141 ---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 141 ---------------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp ---------------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC
T ss_pred ---------------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC
Confidence 3589999999999999988787774 789999999999999976 33332238999999999998
Q ss_pred CCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCC
Q 041143 300 GPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRH 379 (973)
Q Consensus 300 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 379 (973)
+..+. +..+++|+.|+|++|
T Consensus 205 ~l~~~------------------------------------------------------------~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 205 FMGPE------------------------------------------------------------FQSAAGVTWISLRNN 224 (317)
T ss_dssp EECGG------------------------------------------------------------GGGGTTCSEEECTTS
T ss_pred cchhh------------------------------------------------------------hcccCcccEEECcCC
Confidence 53221 234678999999999
Q ss_pred cCCCccchhhhCccccceEEccCCccc-cccCccccCcCCCCeeeCC-CCcCCCCCCC
Q 041143 380 NLTGTLSPSIANLDSLIEIRLGKNSIS-GTVPNNFTELKSLRLLDVS-DNNIKPPLPE 435 (973)
Q Consensus 380 ~l~~~~p~~~~~l~~L~~L~L~~N~l~-g~~p~~~~~l~~L~~L~Ls-~N~l~g~~p~ 435 (973)
+++ .+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+++ .+.++|..|.
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999 57888999999999999999998 8899999999999999999 4567775553
No 317
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=268.61 Aligned_cols=237 Identities=19% Similarity=0.180 Sum_probs=192.7
Q ss_pred ccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCccccccc
Q 041143 88 NQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSV 166 (973)
Q Consensus 88 ~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~ 166 (973)
..+++|++|+|++|.|++.+| .|.++++|++|+|++|.|+.+++ |..+++|++|+|++|.|++. | ..+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~----~~~ 99 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----L----VGP 99 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----E----ECT
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----C----CCC
Confidence 344589999999999998776 68889999999999999987665 88899999999999988853 3 237
Q ss_pred ccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEc
Q 041143 167 QLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWL 246 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 246 (973)
+|++|+|++|.|++..+. .+++|+.|+|++|++++..|..+. ++++|+.|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-------------------------~l~~L~~L~L 151 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-------------------------CRSRVQYLDL 151 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-------------------------GGSSEEEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-------------------------CCCCCCEEEC
Confidence 899999999999876554 467899999999999877666553 4889999999
Q ss_pred cCCccccCCCcccc-CCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcc
Q 041143 247 HGNQFTGSIPEDIG-ALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIE 325 (973)
Q Consensus 247 ~~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 325 (973)
++|.|++.+|..+. .+++|++|+|++|.|++..+ .....+|+.|+|++|.|++..|.
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~--------------------- 209 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE--------------------- 209 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGG---------------------
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHh---------------------
Confidence 99999988888876 78999999999999987632 22222799999999998864332
Q ss_pred cCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCcc
Q 041143 326 CAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSI 405 (973)
Q Consensus 326 ~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 405 (973)
+..+++|+.|+|++|.+++ +|..++.+++|+.|+|++|.+
T Consensus 210 ---------------------------------------~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 210 ---------------------------------------FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ---------------------------------------GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ---------------------------------------HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 2345689999999999996 777899999999999999999
Q ss_pred c-cccCccccCcCCCCeeeCC
Q 041143 406 S-GTVPNNFTELKSLRLLDVS 425 (973)
Q Consensus 406 ~-g~~p~~~~~l~~L~~L~Ls 425 (973)
. +.+|..+..++.|+.|+++
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 8 7888888888888888876
No 318
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=2.8e-26 Score=269.55 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=147.5
Q ss_pred cccCcccccCccEEEEEEECCCCEEEEEEeecCCCChH------HHHHHHHHHHHHHhcCCCceeeeeeEEEeCCeEEEE
Q 041143 628 AQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTK------ALDEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 628 ~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lV 701 (973)
...+.||+|+||.||+|... ++.+|+|+......... ..+++.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 34578999999999999554 78899998754322211 235689999999999999999777777788888999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||+++|+|.+++.. +..++.|+++||+||| +++|+||||||+|||++. ++||+|||+++..
T Consensus 418 mE~~~ggsL~~~l~~-------------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~ 479 (540)
T 3en9_A 418 MSYINGKLAKDVIED-------------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKIS 479 (540)
T ss_dssp EECCCSEEHHHHSTT-------------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEEC
T ss_pred EECCCCCCHHHHHHH-------------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEEC
Confidence 999999999998853 4579999999999999 889999999999999999 9999999999976
Q ss_pred CCCCcce------ecccccccCccccccccc--CcCCCchhHHhHHHHHHHHHhCCCCCC
Q 041143 782 PDGEKSV------VTRLAGTFGYLAPEYAVM--GKITTKADVFSYGVVLMELLTGLAALD 833 (973)
Q Consensus 782 ~~~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvvl~elltg~~p~~ 833 (973)
....... .....||+.|||||++.. ..|+.++|+|+..+-..+.+.++.++.
T Consensus 480 ~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 480 NLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 5432211 235689999999999976 668888999999998888887776653
No 319
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.2e-24 Score=234.67 Aligned_cols=221 Identities=23% Similarity=0.294 Sum_probs=141.0
Q ss_pred EecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCC
Q 041143 73 QVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFN 151 (973)
Q Consensus 73 ~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 151 (973)
+..+.+++ .+|..+. ++|++|+|++|++++..+ .|.++++|++|+|++|+++.+++..|.++++|++|+|++|+++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 33444444 4565553 468888888888888776 6777888888888888887777777777777777777777776
Q ss_pred CccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc-CChhhhhhHHHHHhhcccCCCCCCC
Q 041143 152 KTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV-IPASFGQSLMQILWLNDQDAGGMTG 230 (973)
Q Consensus 152 ~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~l~~~~~~~~~~ 230 (973)
+. .+..|.++++|++|+|++|++++..+..+.++++|++|+|++|++++. +|..+.
T Consensus 90 ~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~------------------- 146 (276)
T 2z62_A 90 SL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS------------------- 146 (276)
T ss_dssp EE----CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-------------------
T ss_pred cc----ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-------------------
Confidence 53 445566666777777777666655555566666666666666666532 344332
Q ss_pred cchhhcCCccccEEEccCCccccCCCccccCCCCCC----EEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCC
Q 041143 231 PIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLK----DLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFK 306 (973)
Q Consensus 231 ~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~ 306 (973)
++++|++|+|++|++++..+..+..+++|+ +|++++|.+++..+..+..
T Consensus 147 ------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~--------------------- 199 (276)
T 2z62_A 147 ------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--------------------- 199 (276)
T ss_dssp ------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS---------------------
T ss_pred ------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC---------------------
Confidence 355566666666655544444454444444 4444444444333322222
Q ss_pred CCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccc
Q 041143 307 AGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLS 386 (973)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 386 (973)
.+|+.|+|++|++++..+
T Consensus 200 --------------------------------------------------------------~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 200 --------------------------------------------------------------IRLKELALDTNQLKSVPD 217 (276)
T ss_dssp --------------------------------------------------------------CCEEEEECCSSCCSCCCT
T ss_pred --------------------------------------------------------------CcccEEECCCCceeecCH
Confidence 256667777777777777
Q ss_pred hhhhCccccceEEccCCccccc
Q 041143 387 PSIANLDSLIEIRLGKNSISGT 408 (973)
Q Consensus 387 ~~~~~l~~L~~L~L~~N~l~g~ 408 (973)
..|.++++|+.|+|++|.+++.
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCC
T ss_pred hHhcccccccEEEccCCccccc
Confidence 7778888888888888888753
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.7e-24 Score=231.92 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=172.9
Q ss_pred eeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecc
Q 041143 95 NLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLI 174 (973)
Q Consensus 95 ~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~ 174 (973)
.++..+.+++.++..+. ++|++|+|++|+|+.+++..|.++++|++|+|++|++++. .+..|.++++|++|+|+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILT 84 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECT
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc----CHHHccCCcCCCEEECC
Confidence 45666677766655443 4688888888888888887888888888888888888763 44567788888888888
Q ss_pred cccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccC
Q 041143 175 NCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGS 254 (973)
Q Consensus 175 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~ 254 (973)
+|++++..+..|.++++|++|+|++|++++..+..+ .++++|++|+|++|++++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI-------------------------GHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC-------------------------TTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhc-------------------------ccCCCCCEEECcCCcccee
Confidence 888887777778888888888888888875444333 3577888888888888753
Q ss_pred -CCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchh
Q 041143 255 -IPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNV 332 (973)
Q Consensus 255 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (973)
+|..|..+++|++|+|++|++++..+..+..+ +|+
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~------------------------------------------- 176 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP------------------------------------------- 176 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-------------------------------------------
T ss_pred cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-------------------------------------------
Confidence 57788888888888888888876655555443 222
Q ss_pred hhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCccc-EEecCCCcCCCccchhhhCccccceEEccCCccccccCc
Q 041143 333 LLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVS-IINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPN 411 (973)
Q Consensus 333 ~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 411 (973)
.|. .|+|++|.+.+..+..+.. .+|+.|+|++|+|++..+.
T Consensus 177 -------------------------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 177 -------------------------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp -------------------------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTT
T ss_pred -------------------------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHh
Confidence 222 5666666666555554544 4899999999999977777
Q ss_pred cccCcCCCCeeeCCCCcCCCCCCCCC
Q 041143 412 NFTELKSLRLLDVSDNNIKPPLPEFH 437 (973)
Q Consensus 412 ~~~~l~~L~~L~Ls~N~l~g~~p~~~ 437 (973)
.|..+++|+.|+|++|++++..|.+.
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred HhcccccccEEEccCCcccccCCchH
Confidence 78999999999999999999887543
No 321
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=3.5e-27 Score=274.80 Aligned_cols=229 Identities=21% Similarity=0.227 Sum_probs=110.4
Q ss_pred CeEEEEEecccCCcc----cCCcCcccccccceeeccCcccCCCCC-C-CCCCC----ccceeeccCCCCCCC----Ccc
Q 041143 67 NRVTQIQVQNLGLKG----PLPQNFNQLTKLYNLGLQRNKFNGKLP-T-FSGLS----ELEFAYLDFNEFDTI----PSD 132 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g----~~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~----~L~~L~L~~N~l~~i----~~~ 132 (973)
.+++.|+|++|++++ .++..+..+++|++|+|++|.++...+ . +..++ +|++|+|++|+|+.. .+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 345666666666653 234455556666666666666654322 1 12233 466666666666632 244
Q ss_pred ccCCCCCccEEEcccCCCCCccCCCCCcccc-----cccccCeeecccccccCC----cchhccCCCCCCeEEccCCcCc
Q 041143 133 FFDGLSSVRVLALDYNPFNKTFGWSIPDSLA-----NSVQLTNLSLINCNLVGP----LPDFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 133 ~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~-----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 203 (973)
.|..+++|++|+|++|+++.. .+..+. .+++|++|+|++|++++. ++..+..+++|++|+|++|+++
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDA----GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHccCCceeEEECCCCcCchH----HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 566666666666666665532 111121 134566666666666642 2444555666666666666665
Q ss_pred ccCChhhhhhHH----HHHhhcccCCCCCCC----cchhhcCCccccEEEccCCccccCC-----CccccCCCCCCEEeC
Q 041143 204 GVIPASFGQSLM----QILWLNDQDAGGMTG----PIDVVAKMVSLTQLWLHGNQFTGSI-----PEDIGALSSLKDLNL 270 (973)
Q Consensus 204 ~~~p~~~~~~~~----~~~~l~~~~~~~~~~----~~~~~~~l~~L~~L~L~~N~l~g~~-----p~~~~~l~~L~~L~L 270 (973)
...+..+...+. ++..|+...+..... ....+..+++|++|+|++|.+++.. +..+..+++|++|+|
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 443333332111 222222222222211 1223334455555555555544321 111223445555555
Q ss_pred cCCccccc----Cccccccc-ccCeEEccCCcCc
Q 041143 271 NRNQLVGL----IPKSLANM-ELDNLVLNNNLLM 299 (973)
Q Consensus 271 s~N~l~~~----~p~~~~~l-~L~~L~l~~N~l~ 299 (973)
++|.++.. ++..+..+ +|+.|++++|.+.
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 55555432 23333333 4555555555543
No 322
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.9e-23 Score=245.67 Aligned_cols=257 Identities=21% Similarity=0.247 Sum_probs=208.0
Q ss_pred ccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccC
Q 041143 90 LTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLT 169 (973)
Q Consensus 90 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~ 169 (973)
..+++.|++++|.|+.++..+. ++|++|+|++|+|+.+|. .+++|++|+|++|+|+. +|. .+++|+
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-----LPV---LPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-----CCC---CCTTCC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-----CCC---CCCCCC
Confidence 3468999999999997665565 899999999999999987 57999999999999995 666 678999
Q ss_pred eeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC
Q 041143 170 NLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN 249 (973)
Q Consensus 170 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 249 (973)
+|+|++|+|++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|++|
T Consensus 105 ~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----------------------------~l~~L~~L~Ls~N 151 (622)
T 3g06_A 105 ELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----------------------------LPPGLQELSVSDN 151 (622)
T ss_dssp EEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----------------------------CCTTCCEEECCSS
T ss_pred EEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----------------------------CCCCCCEEECcCC
Confidence 99999999996 444 67899999999999984 553 2579999999999
Q ss_pred ccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCc
Q 041143 250 QFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPD 329 (973)
Q Consensus 250 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (973)
+|+ .+|. .+++|+.|+|++|+|++ +|..+ .+|+.|++++|.|++ +|..
T Consensus 152 ~l~-~l~~---~~~~L~~L~L~~N~l~~-l~~~~--~~L~~L~Ls~N~l~~-l~~~------------------------ 199 (622)
T 3g06_A 152 QLA-SLPA---LPSELCKLWAYNNQLTS-LPMLP--SGLQELSVSDNQLAS-LPTL------------------------ 199 (622)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CCCC------------------------
T ss_pred cCC-CcCC---ccCCCCEEECCCCCCCC-CcccC--CCCcEEECCCCCCCC-CCCc------------------------
Confidence 999 4564 34789999999999996 55222 279999999999985 4431
Q ss_pred chhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCcccccc
Q 041143 330 VNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTV 409 (973)
Q Consensus 330 ~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~ 409 (973)
+..+..+++..|.+..++. .+++|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+
T Consensus 200 ----~~~L~~L~L~~N~l~~l~~--------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~l 256 (622)
T 3g06_A 200 ----PSELYKLWAYNNRLTSLPA--------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SL 256 (622)
T ss_dssp ----CTTCCEEECCSSCCSSCCC--------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CC
T ss_pred ----cchhhEEECcCCcccccCC--------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cC
Confidence 1235556677777776653 23689999999999997 55 56789999999999999 67
Q ss_pred CccccCcCCCCeeeCCCCcCCCCCCCC---CcccceeecCCcccc
Q 041143 410 PNNFTELKSLRLLDVSDNNIKPPLPEF---HDTVKLVIDGNPLLV 451 (973)
Q Consensus 410 p~~~~~l~~L~~L~Ls~N~l~g~~p~~---~~~~~~~~~~N~~~c 451 (973)
|. .+++|+.|+|++|+|+..++.+ .++..+++.+|++..
T Consensus 257 p~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 257 PM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred Cc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence 76 6789999999999999554433 456678999999754
No 323
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.4e-24 Score=231.66 Aligned_cols=223 Identities=23% Similarity=0.250 Sum_probs=129.5
Q ss_pred ccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccC
Q 041143 90 LTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLT 169 (973)
Q Consensus 90 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~ 169 (973)
+.++..+++..+.+.... .+..+++|+.|++++|.++.++. +..+++|++|+|++|++++ + ..+..+++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~ 88 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD-----I-SALKELTNLT 88 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCC-----C-GGGTTCTTCC
T ss_pred HHHHHHHHhcCccccccc-ccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCC-----c-hhhcCCCCCC
Confidence 345555666666655432 24445666666666666665542 5556666666666666553 2 2455556666
Q ss_pred eeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC
Q 041143 170 NLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN 249 (973)
Q Consensus 170 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 249 (973)
+|+|++|.+++..+..|.++++|++|+|++|++++..+..+ .++++|++|+|++|
T Consensus 89 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 89 YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-------------------------DKLTNLTYLNLAHN 143 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-------------------------TTCTTCCEEECCSS
T ss_pred EEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh-------------------------ccCCCCCEEECCCC
Confidence 66666666665555555666666666666666654333322 23555666666666
Q ss_pred ccccCCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCc
Q 041143 250 QFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPD 329 (973)
Q Consensus 250 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (973)
++++..+..|..+++|++|+|++|++++..+..+..
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------- 179 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-------------------------------------------- 179 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC--------------------------------------------
Confidence 655444444555555666665555555444333333
Q ss_pred chhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCcccccc
Q 041143 330 VNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTV 409 (973)
Q Consensus 330 ~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~ 409 (973)
+++|+.|+|++|++.+..+..++.+++|+.|+|++|.+.+.
T Consensus 180 --------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 220 (272)
T 3rfs_A 180 --------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 220 (272)
T ss_dssp --------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred --------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence 34555566666666655555666777777777777776643
Q ss_pred CccccCcCCCCeeeCCCCcCCCCCCC
Q 041143 410 PNNFTELKSLRLLDVSDNNIKPPLPE 435 (973)
Q Consensus 410 p~~~~~l~~L~~L~Ls~N~l~g~~p~ 435 (973)
+++|+.|+++.|+++|.+|.
T Consensus 221 ------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 221 ------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp ------TTTTHHHHHHHHHTGGGBBC
T ss_pred ------CcHHHHHHHHHHhCCCcccC
Confidence 44677777777777777775
No 324
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=2.5e-26 Score=267.58 Aligned_cols=328 Identities=17% Similarity=0.138 Sum_probs=197.4
Q ss_pred CeEEEEEecccCCcccCCcCcc-ccc----ccceeeccCcccCC----CCC-CCCCCCccceeeccCCCCCCCCcc----
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFN-QLT----KLYNLGLQRNKFNG----KLP-TFSGLSELEFAYLDFNEFDTIPSD---- 132 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~-~l~----~L~~L~L~~N~l~~----~~~-~~~~l~~L~~L~L~~N~l~~i~~~---- 132 (973)
.++++|+|++|.+++..+..+. .+. +|++|+|++|.++. .++ .+..+++|++|+|++|+++.....
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 3455566666555543332222 233 45666666665553 122 455555666666666655432211
Q ss_pred -ccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhcc-----CCCCCCeEEccCCcCccc-
Q 041143 133 -FFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLG-----TLPSLAALKLSYNRLSGV- 205 (973)
Q Consensus 133 -~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~- 205 (973)
.+..+++|++|+|++|+++......++..+..+++|++|+|++|.++...+..+. .+++|++|+|++|++++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 1223445666666666555431112334444555555666655555533333222 244555555555555532
Q ss_pred ---CChhhhhhHHHHHhhcccCCCCCCCc-----chhhcCCccccEEEccCCccccC----CCccccCCCCCCEEeCcCC
Q 041143 206 ---IPASFGQSLMQILWLNDQDAGGMTGP-----IDVVAKMVSLTQLWLHGNQFTGS----IPEDIGALSSLKDLNLNRN 273 (973)
Q Consensus 206 ---~p~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~Ls~N 273 (973)
++..+. ....+..|+...+...... ...+..+++|++|+|++|.+++. ++..+..+++|++|+|++|
T Consensus 216 ~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 216 CRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 122211 1111222222222211111 12233589999999999999964 6788888999999999999
Q ss_pred cccccCccccccc------ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCccc
Q 041143 274 QLVGLIPKSLANM------ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLV 347 (973)
Q Consensus 274 ~l~~~~p~~~~~l------~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~ 347 (973)
.+++..+..+... +|+.|++++|.+++..... +
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---------------------------l-------------- 333 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH---------------------------F-------------- 333 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH---------------------------H--------------
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH---------------------------H--------------
Confidence 9987655555432 7999999999987532110 0
Q ss_pred CCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhC-----ccccceEEccCCcccc----ccCccccCcCC
Q 041143 348 SQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIAN-----LDSLIEIRLGKNSISG----TVPNNFTELKS 418 (973)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~g----~~p~~~~~l~~ 418 (973)
...+..+++|+.|+|++|.+++..+..+.. .++|+.|+|++|+|++ .+|..+..+++
T Consensus 334 --------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 334 --------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp --------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred --------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 001234578999999999999887776654 6799999999999996 88999999999
Q ss_pred CCeeeCCCCcCCCC--------CCC-CCcccceeecCCccc
Q 041143 419 LRLLDVSDNNIKPP--------LPE-FHDTVKLVIDGNPLL 450 (973)
Q Consensus 419 L~~L~Ls~N~l~g~--------~p~-~~~~~~~~~~~N~~~ 450 (973)
|++|||++|++++. +|. ...+..+.+.++.+.
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 99999999999864 232 234666777776654
No 325
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.3e-24 Score=227.83 Aligned_cols=181 Identities=22% Similarity=0.272 Sum_probs=117.1
Q ss_pred CcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccc
Q 041143 86 NFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANS 165 (973)
Q Consensus 86 ~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l 165 (973)
.+..+++|+.|++++|.++. ++.+..+++|++|+|++|+++.++ .+..+++|++|+|++|++++. .+..+.++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l 108 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSL----PNGVFDKL 108 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-CTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCC----CTTTTTTC
T ss_pred ccccccceeeeeeCCCCccc-ccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcc----ChhHhcCC
Confidence 34566667777777776664 344666677777777777776653 466777777777777777653 34445667
Q ss_pred cccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEE
Q 041143 166 VQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLW 245 (973)
Q Consensus 166 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 245 (973)
++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+ .++++|+.|+
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------~~l~~L~~L~ 163 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF-------------------------DKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh-------------------------ccCccCCEEE
Confidence 777777777777776666667777777777777777764444333 3467777777
Q ss_pred ccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcC
Q 041143 246 LHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLL 298 (973)
Q Consensus 246 L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l 298 (973)
|++|++++..+..|..+++|++|+|++|++++..+..+..+ +|+.|++++|.+
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 77777776666666777777777777777776655555544 444444444444
No 326
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.9e-24 Score=225.16 Aligned_cols=192 Identities=23% Similarity=0.311 Sum_probs=169.9
Q ss_pred CCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCC
Q 041143 52 DPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIP 130 (973)
Q Consensus 52 d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~ 130 (973)
+||. |.|+.|.. ..+.+++++++++ .+|..+. ++|+.|+|++|.+++..+ .|.++++|++|+|++|+|+.++
T Consensus 3 ~Cp~---~~gC~C~~-~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 3 TCET---VTGCTCNE-GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp -CHH---HHSSEEEG-GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred cCCC---CCceEcCC-CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 4555 99999963 3457899999998 6777665 689999999999999888 6999999999999999999999
Q ss_pred ccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhh
Q 041143 131 SDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASF 210 (973)
Q Consensus 131 ~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 210 (973)
+..|.++++|++|+|++|++++. .+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred HhHhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 99999999999999999999974 55678899999999999999998888889999999999999999996555444
Q ss_pred hhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccC
Q 041143 211 GQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLI 279 (973)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~ 279 (973)
.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.+..
T Consensus 152 -------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 152 -------------------------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp -------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred -------------------------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 46899999999999999877888999999999999999998763
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.2e-22 Score=219.97 Aligned_cols=178 Identities=26% Similarity=0.226 Sum_probs=109.3
Q ss_pred ccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEc
Q 041143 167 QLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWL 246 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 246 (973)
+|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+. ..+++|++|+|
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------------~~l~~L~~L~L 84 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---------------------------GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------------------------SCCTTCCEEEC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------------------------CCCCcCCEEEC
Confidence 455555555555555555555555555555555555532111 13555666666
Q ss_pred cCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcc
Q 041143 247 HGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIE 325 (973)
Q Consensus 247 ~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 325 (973)
++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+ +|+.|+|++|+|++..+.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------- 142 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG--------------------- 142 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---------------------
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh---------------------
Confidence 666665 555555566666666666666665555555555 555555555555532221
Q ss_pred cCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCcc
Q 041143 326 CAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSI 405 (973)
Q Consensus 326 ~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 405 (973)
.+..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|
T Consensus 143 --------------------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 143 --------------------------------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp --------------------------------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 112345677777777777766666677788888888888888
Q ss_pred ccccCccccCcCCCCeeeCCCCcCCCC
Q 041143 406 SGTVPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 406 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
+ .+|..+..+.+|+.|+|++|.+...
T Consensus 185 ~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 185 Y-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp C-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred C-ccChhhcccccCCeEEeCCCCccCc
Confidence 8 7788888888888888888877654
No 328
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=230.71 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=42.9
Q ss_pred CcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCC
Q 041143 369 SKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKP 431 (973)
Q Consensus 369 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 431 (973)
++|++|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|+|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 46777777777777 5565553 6888888888888853 43 6778888888888888864
No 329
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.9e-22 Score=215.10 Aligned_cols=207 Identities=20% Similarity=0.259 Sum_probs=133.8
Q ss_pred ccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCe
Q 041143 115 ELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAA 194 (973)
Q Consensus 115 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 194 (973)
+++.+++++|+++.+|.... ++|++|+|++|+++.. .+..|.++++|++|+|++|+|+...+..|.++++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSL----PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCC----CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCee----CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 46677777777777765432 4566666666666652 2335666666666666666666555555566666666
Q ss_pred EEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCc
Q 041143 195 LKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQ 274 (973)
Q Consensus 195 L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~ 274 (973)
|+|++|++++..+..| .++++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 90 L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVF-------------------------DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp EECCSSCCCCCCTTTT-------------------------TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHhHc-------------------------ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 6666666653332222 345666666666666665555555666666666666665
Q ss_pred ccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCC
Q 041143 275 LVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGND 354 (973)
Q Consensus 275 l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~ 354 (973)
+++..+..|.
T Consensus 145 l~~~~~~~~~---------------------------------------------------------------------- 154 (270)
T 2o6q_A 145 LQSLPKGVFD---------------------------------------------------------------------- 154 (270)
T ss_dssp CCCCCTTTTT----------------------------------------------------------------------
T ss_pred CCccCHhHcc----------------------------------------------------------------------
Confidence 5543333333
Q ss_pred CCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcCCCCCC
Q 041143 355 PCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP 434 (973)
Q Consensus 355 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p 434 (973)
.+++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.+..+
T Consensus 155 ------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 155 ------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 34566666777777766666678888889999999999987666678889999999999998877654
Q ss_pred C
Q 041143 435 E 435 (973)
Q Consensus 435 ~ 435 (973)
.
T Consensus 223 ~ 223 (270)
T 2o6q_A 223 G 223 (270)
T ss_dssp S
T ss_pred c
Confidence 3
No 330
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.3e-23 Score=219.51 Aligned_cols=213 Identities=17% Similarity=0.243 Sum_probs=160.7
Q ss_pred CCCCCCCCCcCe--EEeeC--------CeEEEEEecccCCcccCCcCcccccccceeeccCcc-cCCCCC-CCCCCCccc
Q 041143 50 GDDPCGPPPWPH--VFCSG--------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNK-FNGKLP-TFSGLSELE 117 (973)
Q Consensus 50 ~~d~C~~~~w~g--v~C~~--------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l~~L~ 117 (973)
.++.|.+..|.. |.|.. ..++.|+|++|++++..+..|.++++|++|+|++|+ ++++.+ .|.++++|+
T Consensus 4 cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp CSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 345666433343 55853 467888888888887777788888888888888886 777766 688888888
Q ss_pred eeeccC-CCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccC---eeecccc-cccCCcchhccCCCCC
Q 041143 118 FAYLDF-NEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLT---NLSLINC-NLVGPLPDFLGTLPSL 192 (973)
Q Consensus 118 ~L~L~~-N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L 192 (973)
+|+|++ |+|+.+++..|.++++|++|+|++|++++ +|. +..+++|+ +|+|++| ++++..+..|.++++|
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 888887 88888888888888888888888888885 565 77777777 8888888 8887666778888888
Q ss_pred C-eEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCc-cccCCCccccCC-CCCCEEe
Q 041143 193 A-ALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQ-FTGSIPEDIGAL-SSLKDLN 269 (973)
Q Consensus 193 ~-~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l-~~L~~L~ 269 (973)
+ +|+|++|+++ .+|... |.. ++|+.|+|++|+ +++..+..|..+ ++|+.|+
T Consensus 158 ~~~L~l~~n~l~-~i~~~~------------------------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQGYA------------------------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEECCSCCCC-EECTTT------------------------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred eeEEEcCCCCCc-ccCHhh------------------------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 8 8888888887 555433 223 688888888884 886556778888 8888888
Q ss_pred CcCCcccccCcccccccccCeEEccCC
Q 041143 270 LNRNQLVGLIPKSLANMELDNLVLNNN 296 (973)
Q Consensus 270 Ls~N~l~~~~p~~~~~l~L~~L~l~~N 296 (973)
|++|++++..+..+. +|+.|+++++
T Consensus 212 l~~N~l~~l~~~~~~--~L~~L~l~~~ 236 (239)
T 2xwt_C 212 VSQTSVTALPSKGLE--HLKELIARNT 236 (239)
T ss_dssp CTTCCCCCCCCTTCT--TCSEEECTTC
T ss_pred CCCCccccCChhHhc--cCceeeccCc
Confidence 888888855444222 6777877765
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.3e-22 Score=219.90 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=77.2
Q ss_pred cccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCccccccc
Q 041143 87 FNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSV 166 (973)
Q Consensus 87 ~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~ 166 (973)
++++++|++|++++|.++.+++.+. ++|++|+|++|+|+.+++..|.++++|++|+|++|+|++. +.. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~-~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVD-GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-----ECC-SCCT
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-----cCC-CCCC
Confidence 3445555555555555554444332 3455555555555555555555555555555555555532 211 4445
Q ss_pred ccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEc
Q 041143 167 QLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWL 246 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 246 (973)
+|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..|..| .++++|++|+|
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-------------------------~~l~~L~~L~L 131 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL-------------------------RGLGELQELYL 131 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT-------------------------TTCTTCCEEEC
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH-------------------------cCCCCCCEEEC
Confidence 5555555555554 344444555555555555555543332222 23445555555
Q ss_pred cCCccccCCCccccCCCCCCEEeCcCCccccc
Q 041143 247 HGNQFTGSIPEDIGALSSLKDLNLNRNQLVGL 278 (973)
Q Consensus 247 ~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ 278 (973)
++|+|++..+..|..+++|+.|+|++|+|++.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 55555543334444455555555555555433
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.7e-24 Score=243.07 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred cccEEecCCCcCCCccch----hhhCccccceEEccCCcccc-------ccCccccCcCCCCeeeCCCCcCCCC
Q 041143 370 KVSIINLPRHNLTGTLSP----SIANLDSLIEIRLGKNSISG-------TVPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~g-------~~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
+|+.|+|++|.+++..+. .+..+++|+.|+|++|.+.+ .++..+..+++|+.|||++|++.+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 566666666666665442 23455677777777777332 2344566777777777777777655
No 333
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.1e-24 Score=240.06 Aligned_cols=207 Identities=17% Similarity=0.252 Sum_probs=149.0
Q ss_pred CcCeEEeeCCeEEEEEecccCCcccCCcCcccc--cccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCC-Ccccc
Q 041143 58 PWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQL--TKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTI-PSDFF 134 (973)
Q Consensus 58 ~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~f 134 (973)
.|.++.|+...++.|+++++.+. +..+..+ ++|+.|++++|.+++.++.+..+++|++|+|++|.++.. .+..+
T Consensus 38 ~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 114 (336)
T 2ast_B 38 RWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 114 (336)
T ss_dssp HHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred HHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence 39999887767889999998887 4667777 899999999999999888877888899999888887753 44557
Q ss_pred CCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccc-cccC-CcchhccCCCCCCeEEccCC-cCccc-CChhh
Q 041143 135 DGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINC-NLVG-PLPDFLGTLPSLAALKLSYN-RLSGV-IPASF 210 (973)
Q Consensus 135 ~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N-~l~~-~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~ 210 (973)
..+++|++|+|++|++++. ++..++.+++|++|+|++| .+++ .++..+.++++|++|+|++| .+++. ++..+
T Consensus 115 ~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp TTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred hhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 7778888888888877653 5666777777777887777 5664 25666777777777777777 77643 23222
Q ss_pred hhhHHHHHhhcccCCCCCCCcchhhcCCc-cccEEEccCC--ccc-cCCCccccCCCCCCEEeCcCCc-ccccCcccccc
Q 041143 211 GQSLMQILWLNDQDAGGMTGPIDVVAKMV-SLTQLWLHGN--QFT-GSIPEDIGALSSLKDLNLNRNQ-LVGLIPKSLAN 285 (973)
Q Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N--~l~-g~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~ 285 (973)
..++ +|++|+|++| .++ +.+|..+..+++|++|+|++|. +++..+..+..
T Consensus 191 -------------------------~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 191 -------------------------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp -------------------------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred -------------------------HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 3466 7777777777 444 3456666677777777777777 55555555554
Q ss_pred c-ccCeEEccCC
Q 041143 286 M-ELDNLVLNNN 296 (973)
Q Consensus 286 l-~L~~L~l~~N 296 (973)
+ +|+.|++++|
T Consensus 246 l~~L~~L~l~~~ 257 (336)
T 2ast_B 246 LNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEeeCCCC
Confidence 4 4555555555
No 334
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.2e-24 Score=244.69 Aligned_cols=201 Identities=20% Similarity=0.248 Sum_probs=134.9
Q ss_pred ccccccCeeecccccccC----CcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCC
Q 041143 163 ANSVQLTNLSLINCNLVG----PLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKM 238 (973)
Q Consensus 163 ~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 238 (973)
..+++|++|+|++|.|++ .++..+..+++|++|+|++|.+++..+..+...+..+..... -...
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~------------~~~~ 158 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK------------AKNA 158 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH------------HHTC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh------------cccC
Confidence 566777777777777775 366677777777777777777764444444321111000000 0011
Q ss_pred ccccEEEccCCccc-cCCC---ccccCCCCCCEEeCcCCccc--c---cCccccccc-ccCeEEccCCcCc----CCCCC
Q 041143 239 VSLTQLWLHGNQFT-GSIP---EDIGALSSLKDLNLNRNQLV--G---LIPKSLANM-ELDNLVLNNNLLM----GPIPK 304 (973)
Q Consensus 239 ~~L~~L~L~~N~l~-g~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l-~L~~L~l~~N~l~----g~~p~ 304 (973)
++|++|+|++|+++ +.+| ..+..+++|++|+|++|+++ | .++..+..+ +|+.|+|++|.|+ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67777777777776 3444 45667777888888887776 2 233355555 6777888777775 22221
Q ss_pred CCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCc
Q 041143 305 FKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGT 384 (973)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 384 (973)
.+..+++|+.|+|++|.+++.
T Consensus 239 -----------------------------------------------------------~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 239 -----------------------------------------------------------ALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp -----------------------------------------------------------HGGGCTTCCEEECTTCCCCHH
T ss_pred -----------------------------------------------------------HHccCCCcCEEECCCCCCchh
Confidence 123456788888888888876
Q ss_pred ----cchhhhC--ccccceEEccCCcccc----ccCccc-cCcCCCCeeeCCCCcCCCCCC
Q 041143 385 ----LSPSIAN--LDSLIEIRLGKNSISG----TVPNNF-TELKSLRLLDVSDNNIKPPLP 434 (973)
Q Consensus 385 ----~p~~~~~--l~~L~~L~L~~N~l~g----~~p~~~-~~l~~L~~L~Ls~N~l~g~~p 434 (973)
++..+.. +++|+.|+|++|.|++ .+|..+ .++++|++|+|++|++++..+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 6667744 8999999999999997 588887 668999999999999998765
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=223.03 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=169.5
Q ss_pred eEEEEEecccCCcccCCcCc--ccccccceeeccCcccCCCCC-----CCCCCCccceeeccCCCCCCCCccccCCCCCc
Q 041143 68 RVTQIQVQNLGLKGPLPQNF--NQLTKLYNLGLQRNKFNGKLP-----TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSV 140 (973)
Q Consensus 68 ~v~~L~L~~~~l~g~~~~~~--~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 140 (973)
++++|+|++|++++..|..+ .++++|++|+|++|.+++..+ .+..+++|++|+|++|+|..+++..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 49999999999999999988 999999999999999998655 24579999999999999999999999999999
Q ss_pred cEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcch----hccCCCCCCeEEccCCcCcccCChhhhhhHHH
Q 041143 141 RVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPD----FLGTLPSLAALKLSYNRLSGVIPASFGQSLMQ 216 (973)
Q Consensus 141 ~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 216 (973)
++|+|++|++.+..+...+..+..+++|++|+|++|+|+ .++. .++++++|++|+|++|++++.+|..+..
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~---- 246 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR---- 246 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS----
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh----
Confidence 999999999865211012334478899999999999997 3333 3578899999999999999887776532
Q ss_pred HHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccC
Q 041143 217 ILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNN 295 (973)
Q Consensus 217 ~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~ 295 (973)
+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+ +|+.|+|++
T Consensus 247 ------------------~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 247 ------------------CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp ------------------CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred ------------------ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 223479999999999999 7888775 7999999999999974 33 4555 799999999
Q ss_pred CcCcC
Q 041143 296 NLLMG 300 (973)
Q Consensus 296 N~l~g 300 (973)
|+|+.
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 99874
No 336
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=1.3e-22 Score=218.41 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=120.5
Q ss_pred HHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCCh----------------HHHHHHHHHHHHHHhcCCCc
Q 041143 621 RKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTT----------------KALDEFQSEIAVLSKVRHRH 684 (973)
Q Consensus 621 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~----------------~~~~~~~~E~~~l~~l~h~n 684 (973)
......|...+.||+|+||.||+|...+|+.||||+++...... .....+.+|++++++++ |
T Consensus 86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~ 163 (282)
T 1zar_A 86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G 163 (282)
T ss_dssp HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T
T ss_pred HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C
Confidence 33345666779999999999999998779999999986432111 24567899999999999 5
Q ss_pred eeeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEE
Q 041143 685 LVSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILL 764 (973)
Q Consensus 685 iv~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill 764 (973)
+++.+++.. +..++||||+++|+|.+ +. ......++.||++||+||| +.+|+||||||+|||+
T Consensus 164 -~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~-----------~~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl 226 (282)
T 1zar_A 164 -LAVPKVYAW-EGNAVLMELIDAKELYR-VR-----------VENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLV 226 (282)
T ss_dssp -SSSCCEEEE-ETTEEEEECCCCEEGGG-CC-----------CSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEE
T ss_pred -CCcCeEEec-cceEEEEEecCCCcHHH-cc-----------hhhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEE
Confidence 677765544 55699999999999976 31 1234579999999999999 8899999999999999
Q ss_pred CCCCCEEEeeccccccCCCCCcceecccccccCcccccccc
Q 041143 765 DDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAV 805 (973)
Q Consensus 765 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~ 805 (973)
+ ++.+||+|||+|+. +..|+|||++.
T Consensus 227 ~-~~~vkl~DFG~a~~--------------~~~~~a~e~l~ 252 (282)
T 1zar_A 227 S-EEGIWIIDFPQSVE--------------VGEEGWREILE 252 (282)
T ss_dssp E-TTEEEECCCTTCEE--------------TTSTTHHHHHH
T ss_pred E-CCcEEEEECCCCeE--------------CCCCCHHHHHH
Confidence 9 99999999999863 34578999874
No 337
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=3.5e-22 Score=205.49 Aligned_cols=186 Identities=24% Similarity=0.358 Sum_probs=153.8
Q ss_pred CCCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCC
Q 041143 51 DDPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTI 129 (973)
Q Consensus 51 ~d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i 129 (973)
++.|. |.|.+|.|+...++ .+|..+ .++|++|+|++|++++.++ .|.++++|++|+|++|+|+.+
T Consensus 2 p~~C~-C~~~~v~c~~~~l~-----------~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (208)
T 2o6s_A 2 PSRCS-CSGTTVECYSQGRT-----------SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67 (208)
T ss_dssp CTTCE-EETTEEECCSSCCS-----------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred cCCCE-ECCCEEEecCCCcc-----------CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence 34564 45999999765443 344443 4589999999999998777 478899999999999999999
Q ss_pred CccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChh
Q 041143 130 PSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPAS 209 (973)
Q Consensus 130 ~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 209 (973)
++..|..+++|++|+|++|++++. .+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSL----PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ChhhcCCCCCcCEEECCCCcCCcc----CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 999999999999999999999963 4455789999999999999999877778899999999999999998554433
Q ss_pred hhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc
Q 041143 210 FGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM 286 (973)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 286 (973)
+ ..+++|+.|+|++|.+.+. +++|++|+++.|+++|.+|..++.+
T Consensus 144 ~-------------------------~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 144 F-------------------------DRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp T-------------------------TTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred h-------------------------ccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCccc
Confidence 3 4589999999999988754 4589999999999999999988876
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.8e-22 Score=208.16 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=45.2
Q ss_pred ccceeeccCcccCCCCC-CCCCCCccceeeccCCC-CCCCCccccCCCCCccEEEccc-CCCCCccCCCCCccccccccc
Q 041143 92 KLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNE-FDTIPSDFFDGLSSVRVLALDY-NPFNKTFGWSIPDSLANSVQL 168 (973)
Q Consensus 92 ~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~L~Ls~-N~l~~~~~~~ip~~~~~l~~L 168 (973)
+|++|+|++|+|+++++ .|.++++|++|+|++|+ ++.+++..|.++++|++|+|++ |+++.. .+..|.++++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i----~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI----DPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE----CTTSEECCTTC
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc----CHHHhCCCCCC
Confidence 56666666666666555 45556666666666664 5555555555555555555555 555432 22334444444
Q ss_pred Ceeeccccccc
Q 041143 169 TNLSLINCNLV 179 (973)
Q Consensus 169 ~~L~L~~N~l~ 179 (973)
++|+|++|+++
T Consensus 108 ~~L~l~~n~l~ 118 (239)
T 2xwt_C 108 KFLGIFNTGLK 118 (239)
T ss_dssp CEEEEEEECCC
T ss_pred CEEeCCCCCCc
Confidence 44444444444
No 339
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-21 Score=213.88 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=15.2
Q ss_pred cccEEecCCCcCCCccchhhhCccccceEEccCCccc
Q 041143 370 KVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSIS 406 (973)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 406 (973)
+|+.|+|++|++.+..+ +..+++|+.|+|++|+++
T Consensus 196 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 33444444444433332 444444555555555444
No 340
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.8e-21 Score=203.97 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=163.0
Q ss_pred cccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCe
Q 041143 91 TKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTN 170 (973)
Q Consensus 91 ~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~ 170 (973)
...++++++++.++.+++.+. ++|+.|+|++|+|+.+++..|.++++|++|+|++|+|++. .+..|..+++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCE
Confidence 457889999999998777665 6899999999999999999999999999999999999985 6677899999999
Q ss_pred eecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCc
Q 041143 171 LSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQ 250 (973)
Q Consensus 171 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 250 (973)
|+|++|+|++..+..|..+++|++|+|++|+|++..+..| .++++|++|+|++|+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------------------~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF-------------------------DRLTKLKELRLNTNQ 142 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHh-------------------------ccCCcccEEECcCCc
Confidence 9999999998888899999999999999999995554443 469999999999999
Q ss_pred cccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCC
Q 041143 251 FTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPI 302 (973)
Q Consensus 251 l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~ 302 (973)
|++..+..|..+++|++|+|++|+|++..+..+..+ +|+.|+|++|.+.+..
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 997777789999999999999999998888888888 8999999999998653
No 341
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.6e-24 Score=239.42 Aligned_cols=270 Identities=19% Similarity=0.196 Sum_probs=204.8
Q ss_pred cCCcCcccccccceeeccCcccCCCCC-----CCCCCCccceeeccCCCCCCCC----ccc------cCCCCCccEEEcc
Q 041143 82 PLPQNFNQLTKLYNLGLQRNKFNGKLP-----TFSGLSELEFAYLDFNEFDTIP----SDF------FDGLSSVRVLALD 146 (973)
Q Consensus 82 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~~L~L~~N~l~~i~----~~~------f~~l~~L~~L~Ls 146 (973)
.++..+..+++|++|+|++|.|+...+ .|..+++|++|+|++|.+..+. ... |..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778899999999999999988533 4788999999999998776443 222 4789999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchh----ccCC---------CCCCeEEccCCcCc-ccCChhhhh
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDF----LGTL---------PSLAALKLSYNRLS-GVIPASFGQ 212 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~p~~~~~ 212 (973)
+|+++......+|..+..+++|++|+|++|.|+...+.. +..+ ++|++|+|++|+++ +.++. +.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~- 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE-WA- 180 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-HH-
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-HH-
Confidence 999987322236778899999999999999997544444 4344 99999999999997 33332 21
Q ss_pred hHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccc--c---CCCccccCCCCCCEEeCcCCccc----ccCcccc
Q 041143 213 SLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFT--G---SIPEDIGALSSLKDLNLNRNQLV----GLIPKSL 283 (973)
Q Consensus 213 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--g---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~ 283 (973)
..+..+++|++|+|++|+|+ | .+|..+..+++|++|+|++|.++ +.+|..+
T Consensus 181 --------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 181 --------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp --------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred --------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 22456889999999999998 3 34558899999999999999996 5677788
Q ss_pred ccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccc
Q 041143 284 ANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLG 362 (973)
Q Consensus 284 ~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~ 362 (973)
..+ +|+.|+|++|.|++..... +...+
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~---------------------------l~~~l------------------------- 268 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAA---------------------------VVDAF------------------------- 268 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHH---------------------------HHHHH-------------------------
T ss_pred ccCCCcCEEECCCCCCchhhHHH---------------------------HHHHH-------------------------
Confidence 777 8999999999987531110 00000
Q ss_pred cccCCCCcccEEecCCCcCCC----ccchhh-hCccccceEEccCCccccccC--ccc-cCcCCCCeeeCCC
Q 041143 363 LSCTSNSKVSIINLPRHNLTG----TLSPSI-ANLDSLIEIRLGKNSISGTVP--NNF-TELKSLRLLDVSD 426 (973)
Q Consensus 363 ~~~~~~~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~g~~p--~~~-~~l~~L~~L~Ls~ 426 (973)
....+++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..+ ..+ ..++.++.+++..
T Consensus 269 -~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 269 -SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp -HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred -hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 11236789999999999999 588887 779999999999999997664 333 2345555555543
No 342
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=3.6e-21 Score=210.57 Aligned_cols=190 Identities=24% Similarity=0.369 Sum_probs=167.9
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
.+++.|++++++++. ++ .+..+++|++|+|++|.+++..+ +.++++|++|+|++|+++.++ .|..+++|++|+|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECC
Confidence 479999999999985 44 79999999999999999998777 999999999999999999985 58999999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
+|++++ ++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++..+ +
T Consensus 116 ~n~l~~-----~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l---------------- 169 (308)
T 1h6u_A 116 STQITD-----VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L---------------- 169 (308)
T ss_dssp TSCCCC-----CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G----------------
T ss_pred CCCCCC-----ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h----------------
Confidence 999996 44 48999999999999999997554 8999999999999999985322 3
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcC
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMG 300 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g 300 (973)
.++++|+.|+|++|++++..+ +..+++|++|+|++|++++..+ +..+ +|+.|++++|.+++
T Consensus 170 ---------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ---------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ---------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ---------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 468999999999999995443 8999999999999999997653 6666 89999999999985
No 343
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.6e-23 Score=229.66 Aligned_cols=253 Identities=21% Similarity=0.247 Sum_probs=153.0
Q ss_pred eeccCcccCCCCCCCCCC-CccceeeccCCCCCCCCc----cccCCCC-CccEEEcccCCCCCccCCCCCcccccc----
Q 041143 96 LGLQRNKFNGKLPTFSGL-SELEFAYLDFNEFDTIPS----DFFDGLS-SVRVLALDYNPFNKTFGWSIPDSLANS---- 165 (973)
Q Consensus 96 L~L~~N~l~~~~~~~~~l-~~L~~L~L~~N~l~~i~~----~~f~~l~-~L~~L~Ls~N~l~~~~~~~ip~~~~~l---- 165 (973)
++|++|.+++.+|.+... ++|++|+|++|+|+.++. ..|..++ +|++|+|++|++++. .+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----NSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS----CHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH----HHHHHHHHHhcc
Confidence 456666666666644333 336667777666666665 5566666 666666666666653 33444443
Q ss_pred -cccCeeecccccccCCcchhcc----CC-CCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCC-
Q 041143 166 -VQLTNLSLINCNLVGPLPDFLG----TL-PSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKM- 238 (973)
Q Consensus 166 -~~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l- 238 (973)
++|++|+|++|.|++..+..+. .+ ++|++|+|++|++++..+..+.. .+..+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~---------------------~l~~~~ 137 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ---------------------AFSNLP 137 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH---------------------HHTTSC
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH---------------------HHHhCC
Confidence 6666666666666655544332 33 66666666666666444444321 12232
Q ss_pred ccccEEEccCCccccCC----CccccCCC-CCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCCCCCcccc
Q 041143 239 VSLTQLWLHGNQFTGSI----PEDIGALS-SLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFKAGNVTYD 313 (973)
Q Consensus 239 ~~L~~L~L~~N~l~g~~----p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~~~~~~~~ 313 (973)
++|++|+|++|+|++.. +..+..++ +|++|+|++|++++..+..+...
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~--------------------------- 190 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF--------------------------- 190 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH---------------------------
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH---------------------------
Confidence 46666666666666432 22333443 56666666666655444333221
Q ss_pred cCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCC-CcccEEecCCCcCCCc----cchh
Q 041143 314 SNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSN-SKVSIINLPRHNLTGT----LSPS 388 (973)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~~~----~p~~ 388 (973)
+..+ ++|+.|+|++|.+++. ++..
T Consensus 191 ---------------------------------------------------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 191 ---------------------------------------------------LASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp ---------------------------------------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ---------------------------------------------------HHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 0112 2566777777777663 5556
Q ss_pred hhC-ccccceEEccCCccccccC----ccccCcCCCCeeeCCCCcCCCC-----------CCCCCcccceeecCCcccc
Q 041143 389 IAN-LDSLIEIRLGKNSISGTVP----NNFTELKSLRLLDVSDNNIKPP-----------LPEFHDTVKLVIDGNPLLV 451 (973)
Q Consensus 389 ~~~-l~~L~~L~L~~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l~g~-----------~p~~~~~~~~~~~~N~~~c 451 (973)
+.. .++|+.|+|++|+|++..+ ..+..+++|+.|+|++|.+.+. .+.+..+..+++.+|++..
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 666 4599999999999986544 4457789999999999996543 3445566778999998643
No 344
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.2e-21 Score=216.51 Aligned_cols=193 Identities=19% Similarity=0.183 Sum_probs=110.6
Q ss_pred ecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCC-CCCccccCCCCCccE-EEcccCCC
Q 041143 74 VQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFD-TIPSDFFDGLSSVRV-LALDYNPF 150 (973)
Q Consensus 74 L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~-L~Ls~N~l 150 (973)
.++++|+ .+|..+ .++|++|+|++|+|+.+++ .|.++++|++|+|++|++. .++..+|.++++|++ +.++.|++
T Consensus 16 C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 16 CQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 3444454 566655 2567788888888877666 5777777777777777764 466667777766554 45556666
Q ss_pred CCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccC-CcCcccCChhhhhhHHHHHhhcccCCCCCC
Q 041143 151 NKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSY-NRLSGVIPASFGQSLMQILWLNDQDAGGMT 229 (973)
Q Consensus 151 ~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~ 229 (973)
+.+ .|..|..+++|++|++++|+|+...+..+....++..|++.+ |++....+..|
T Consensus 93 ~~l----~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f------------------- 149 (350)
T 4ay9_X 93 LYI----NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF------------------- 149 (350)
T ss_dssp CEE----CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS-------------------
T ss_pred ccc----CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch-------------------
Confidence 653 345566666667777766666655555555555666666644 34442222222
Q ss_pred CcchhhcCC-ccccEEEccCCccccCCCccccCCCCCCEEeCcC-CcccccCccccccc-ccCeEEccCCcCc
Q 041143 230 GPIDVVAKM-VSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNR-NQLVGLIPKSLANM-ELDNLVLNNNLLM 299 (973)
Q Consensus 230 ~~~~~~~~l-~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l-~L~~L~l~~N~l~ 299 (973)
..+ ..|+.|+|++|+|+ .+|.......+|+.|++++ |.++...+..|..+ +|+.|+|++|+|+
T Consensus 150 ------~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 150 ------VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ------TTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred ------hhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 122 24555666666665 3444444445566666553 34443333344444 4555555555554
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2.4e-21 Score=216.32 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=98.7
Q ss_pred eeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCC-cccccccccCe-ee
Q 041143 95 NLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIP-DSLANSVQLTN-LS 172 (973)
Q Consensus 95 ~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip-~~~~~l~~L~~-L~ 172 (973)
.++.++|+++.++..+ .++|++|+|++|+|+.|++++|.++++|++|+|++|++.+. +| ..|.++++|+. +.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE----ECTTSBCSCTTCCEEEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc----cChhHhhcchhhhhhhc
Confidence 4566666666554433 24566666666666666666666666666666666666543 33 34555655543 44
Q ss_pred cccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccC-Ccc
Q 041143 173 LINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHG-NQF 251 (973)
Q Consensus 173 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l 251 (973)
+++|+|+...|..|.++++|++|++++|+++...+..+ ....++..|++.+ |++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-------------------------IHSLQKVLLDIQDNINI 141 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-------------------------CCBSSCEEEEEESCTTC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhh-------------------------cccchhhhhhhcccccc
Confidence 55566665556666666666666666666663333222 1344555666643 445
Q ss_pred ccCCCccccCCC-CCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCC
Q 041143 252 TGSIPEDIGALS-SLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIP 303 (973)
Q Consensus 252 ~g~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p 303 (973)
+...+..|..+. .++.|+|++|+|+...+..|...+|+.|++.+|+..+.+|
T Consensus 142 ~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred ccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC
Confidence 533334455443 4566666666666544444544466666665433333333
No 346
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.3e-22 Score=225.48 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=194.5
Q ss_pred ccceeeccCcccCCCCCCCCCC--CccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccC
Q 041143 92 KLYNLGLQRNKFNGKLPTFSGL--SELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLT 169 (973)
Q Consensus 92 ~L~~L~L~~N~l~~~~~~~~~l--~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~ 169 (973)
.++.|++++|.+.. ..+..+ ++++.|++++|.+...++..+ .+++|++|+|++|.+++. .++..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLHP--DVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCCH--HHHHHHHHTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHH---HHHHHHTTBCCCS
T ss_pred hheeeccccccCCH--HHHHhhhhccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHH---HHHHHHhhCCCCC
Confidence 47889999998872 245555 889999999999998887744 689999999999988753 2677788999999
Q ss_pred eeecccccccCCcchhccCCCCCCeEEccCC-cCccc-CChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEcc
Q 041143 170 NLSLINCNLVGPLPDFLGTLPSLAALKLSYN-RLSGV-IPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLH 247 (973)
Q Consensus 170 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~ 247 (973)
+|+|++|.+++..+..++.+++|++|+|++| .+++. ++..+ .++++|++|+|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-------------------------~~~~~L~~L~l~ 176 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-------------------------SSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-------------------------HHCTTCCEEECC
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-------------------------hcCCCCCEEcCC
Confidence 9999999999888889999999999999999 67642 33333 358999999999
Q ss_pred CC-ccccC-CCccccCCC-CCCEEeCcCC--ccc-ccCccccccc-ccCeEEccCCc-CcCCCCCCCCCCcccccCcccC
Q 041143 248 GN-QFTGS-IPEDIGALS-SLKDLNLNRN--QLV-GLIPKSLANM-ELDNLVLNNNL-LMGPIPKFKAGNVTYDSNSFCQ 319 (973)
Q Consensus 248 ~N-~l~g~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l-~L~~L~l~~N~-l~g~~p~~~~~~~~~~~~~~~~ 319 (973)
+| .+++. ++..+..++ +|++|+|++| .++ +.+|..+..+ +|+.|++++|. +++..+.
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------- 241 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ--------------- 241 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---------------
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---------------
Confidence 99 99865 677788999 9999999999 555 4556666666 79999999998 5544332
Q ss_pred CCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCc-CCCccchhhhCccccceE
Q 041143 320 SEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHN-LTGTLSPSIANLDSLIEI 398 (973)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L 398 (973)
.+..+++|+.|+|++|. +.......++++++|+.|
T Consensus 242 --------------------------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 242 --------------------------------------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp --------------------------------------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred --------------------------------------------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 22345789999999985 333333368889999999
Q ss_pred EccCCccccccCccccCc-CCCCeeeCCCCcCCCCCCCC
Q 041143 399 RLGKNSISGTVPNNFTEL-KSLRLLDVSDNNIKPPLPEF 436 (973)
Q Consensus 399 ~L~~N~l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~~p~~ 436 (973)
+|++| ++ ...+..+ .+|..|++++|+|++..|..
T Consensus 278 ~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 278 QVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 99988 33 2234455 34788889999999887753
No 347
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=8.4e-22 Score=231.21 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=172.1
Q ss_pred cCCCCCCCCCCCCCC--CcCeE-EeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCcccee
Q 041143 43 LLKWPANGDDPCGPP--PWPHV-FCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFA 119 (973)
Q Consensus 43 l~~w~~~~~d~C~~~--~w~gv-~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 119 (973)
+.+|.. +.+||... .|.|+ .|..++++.|+|++|+|++ +|..+. ++|++|+|++|+|+.++ ..+++|++|
T Consensus 33 l~~W~~-~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L 105 (571)
T 3cvr_A 33 WDKWEK-QALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALISLP---ELPASLEYL 105 (571)
T ss_dssp HHHHHT-TCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEE
T ss_pred HHHHhc-cCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcccc---cccCCCCEE
Confidence 345643 46788421 39999 7987899999999999997 787664 89999999999999644 568999999
Q ss_pred eccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccC
Q 041143 120 YLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSY 199 (973)
Q Consensus 120 ~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 199 (973)
+|++|+|+.+|. |.+ +|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++
T Consensus 106 ~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 106 DACDNRLSTLPE--LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp ECCSSCCSCCCC--CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred EccCCCCCCcch--hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 999999999887 554 99999999999997 666 68999999999999996 665 689999999999
Q ss_pred CcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCC-------CEEeCcC
Q 041143 200 NRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSL-------KDLNLNR 272 (973)
Q Consensus 200 N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L-------~~L~Ls~ 272 (973)
|+|++ +|. + .++|+.|+|++|+|+ .+|. |.. +| +.|+|++
T Consensus 170 N~L~~-lp~-l---------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 170 NQLTF-LPE-L---------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp SCCSC-CCC-C---------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCCCC-cch-h---------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 99995 665 4 278999999999999 7887 665 77 9999999
Q ss_pred CcccccCccccccc-ccCeEEccCCcCcCCCCC
Q 041143 273 NQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 273 N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~ 304 (973)
|+|+ .+|..+..+ +|+.|+|++|.|++.+|.
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 9999 477777767 899999999999988776
No 348
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=2.6e-21 Score=226.97 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=36.3
Q ss_pred cccEEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCC
Q 041143 370 KVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKS 418 (973)
Q Consensus 370 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 418 (973)
.|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..|..+..
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 4577777777777 46777777888888888888888888877777654
No 349
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.85 E-value=2.8e-22 Score=244.34 Aligned_cols=226 Identities=21% Similarity=0.191 Sum_probs=133.8
Q ss_pred CChhHHHHHHHHHhhCCCCc---cCCCCCCCCCCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeecc
Q 041143 23 TDPNDLKILNDFKNGLENPE---LLKWPANGDDPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQ 99 (973)
Q Consensus 23 ~~~~~~~~l~~~k~~~~~~~---l~~w~~~~~d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~ 99 (973)
....+.++|+++..+...+. ...|.......+. |.++.++..+++.|+|.++++... +. ..|+.|+|+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls 199 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGT---ATNSAVSTPLTPKIELFANGKDEA-NQ-----ALLQHKKLS 199 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCcccc---CCCceecCCccceEEeeCCCCCcc-hh-----hHhhcCccC
Confidence 34457888999987763221 2345433333343 999999999999999999998862 33 346667788
Q ss_pred CcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccccc
Q 041143 100 RNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLV 179 (973)
Q Consensus 100 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~ 179 (973)
+|.|.+ +++..|++. +++..|..+++|+.|+|++|++.. +|..+.++++|++|+|++|.|+
T Consensus 200 ~~~i~~-------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~ 260 (727)
T 4b8c_D 200 QYSIDE-------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLT 260 (727)
T ss_dssp ------------------------------------CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCS
T ss_pred cccccC-------------cccccccee-cChhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCc
Confidence 777664 345566666 667788999999999999999984 7888889999999999999999
Q ss_pred CCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccc
Q 041143 180 GPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDI 259 (973)
Q Consensus 180 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~ 259 (973)
.+|..|++|++|++|+|++|+|+ .+|..|. ++++|++|+|++|.|+ .+|..|
T Consensus 261 -~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------------------------~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 261 -ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-------------------------SCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp -CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-------------------------GGTTCSEEECCSSCCC-CCCSST
T ss_pred -ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-------------------------CCCCCCEEECCCCCCC-ccChhh
Confidence 88999999999999999999999 7787764 5899999999999998 889999
Q ss_pred cCCCCCCEEeCcCCcccccCccccccc--ccCeEEccCCcCcCCCCC
Q 041143 260 GALSSLKDLNLNRNQLVGLIPKSLANM--ELDNLVLNNNLLMGPIPK 304 (973)
Q Consensus 260 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~L~~L~l~~N~l~g~~p~ 304 (973)
+.+++|++|+|++|.|++.+|..+... .+..|+|++|.++|.+|.
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 999999999999999999999988765 344578999999888775
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.5e-20 Score=190.53 Aligned_cols=176 Identities=21% Similarity=0.203 Sum_probs=146.0
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+.++++++.++..+..+ .++|++|+|++|+|+.+++..|.++++|++|+|++|++++. .+..|..+++|++|+|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEEC
Confidence 46778888888766544 35899999999999999999999999999999999999863 3445788999999999
Q ss_pred ccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc
Q 041143 174 INCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG 253 (973)
Q Consensus 174 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g 253 (973)
++|+|++..+..|.++++|++|+|++|++++..+..+ .++++|++|+|++|++++
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------------------~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-------------------------DKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCSC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh-------------------------ccCCcCCEEECCCCccce
Confidence 9999997777778999999999999999985554433 458899999999999997
Q ss_pred CCCccccCCCCCCEEeCcCCcccccCcccccccccCeEEccCCcCcCCCCCCC
Q 041143 254 SIPEDIGALSSLKDLNLNRNQLVGLIPKSLANMELDNLVLNNNLLMGPIPKFK 306 (973)
Q Consensus 254 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~L~~L~l~~N~l~g~~p~~~ 306 (973)
..+..|..+++|++|+|++|.+.+..| +|+.|+++.|.++|.+|..+
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCCCTT------TTHHHHHHHHHCTTTBBCTT
T ss_pred eCHHHhccCCCccEEEecCCCeecCCC------CHHHHHHHHHhCCceeeccC
Confidence 666678889999999999998876543 57788899999999999754
No 351
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.1e-19 Score=187.43 Aligned_cols=160 Identities=27% Similarity=0.403 Sum_probs=131.9
Q ss_pred CCCCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCC
Q 041143 50 GDDPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDT 128 (973)
Q Consensus 50 ~~d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 128 (973)
+.+.|. |.+|.|+..+++ .+|..+. ++|++|+|++|.|++..| .|.++++|++|+|++|+|+.
T Consensus 15 ~~~~Cs---~~~v~c~~~~l~-----------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 15 SQCSCS---GTTVDCRSKRHA-----------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp TTCEEE---TTEEECTTSCCS-----------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCEEe---CCEeEccCCCcC-----------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 567787 999999876553 4555443 889999999999999877 68899999999999999999
Q ss_pred CCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCCh
Q 041143 129 IPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPA 208 (973)
Q Consensus 129 i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 208 (973)
+++..|.++++|++|+|++|+|++. .+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+.
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred cChhhcccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 9999999999999999999999864 4455788999999999999998 7788889999999999999999855443
Q ss_pred hhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCC
Q 041143 209 SFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSI 255 (973)
Q Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~ 255 (973)
.| ..+++|+.|+|++|.+....
T Consensus 154 ~~-------------------------~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AF-------------------------DRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TT-------------------------TTCTTCCEEECTTSCBCTTB
T ss_pred HH-------------------------hCCCCCCEEEeeCCCccCCc
Confidence 33 45788888888888877543
No 352
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=4.2e-19 Score=183.87 Aligned_cols=149 Identities=23% Similarity=0.339 Sum_probs=126.4
Q ss_pred EEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCC
Q 041143 72 IQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPF 150 (973)
Q Consensus 72 L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 150 (973)
+++++++++ .+|..+. ++|+.|+|++|+|+++++ .|.++++|++|+|++|+|+.+.+..|.++++|++|+|++|+|
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 345555565 5666654 689999999999999887 789999999999999999999999999999999999999999
Q ss_pred CCccCCCCCc-ccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCC
Q 041143 151 NKTFGWSIPD-SLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMT 229 (973)
Q Consensus 151 ~~~~~~~ip~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~ 229 (973)
+. +|. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|
T Consensus 93 ~~-----l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------- 148 (220)
T 2v9t_B 93 TE-----LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF------------------- 148 (220)
T ss_dssp CC-----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-------------------
T ss_pred Cc-----cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH-------------------
Confidence 96 454 46889999999999999999889999999999999999999996655544
Q ss_pred CcchhhcCCccccEEEccCCcccc
Q 041143 230 GPIDVVAKMVSLTQLWLHGNQFTG 253 (973)
Q Consensus 230 ~~~~~~~~l~~L~~L~L~~N~l~g 253 (973)
..+++|+.|+|++|.+..
T Consensus 149 ------~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 149 ------SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ------TTCTTCCEEECCSSCEEC
T ss_pred ------hCCCCCCEEEeCCCCcCC
Confidence 358889999999988863
No 353
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=6.3e-21 Score=229.36 Aligned_cols=333 Identities=12% Similarity=0.028 Sum_probs=179.2
Q ss_pred CeEEEEEecccCCccc----CCcCcccccccceeeccCcccCCCC----C-CCCCCCccceeeccCCCCCCCCccccCCC
Q 041143 67 NRVTQIQVQNLGLKGP----LPQNFNQLTKLYNLGLQRNKFNGKL----P-TFSGLSELEFAYLDFNEFDTIPSDFFDGL 137 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~----~~~~~~~l~~L~~L~L~~N~l~~~~----~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l 137 (973)
..+++|+|++|.+++. ++..+.++++|++|+|++|.+++.. + .+.++++|++|+|++|.+..++ ..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 5788899998888765 3445567888999999988887432 2 3566888999999888887765 556777
Q ss_pred CCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHH
Q 041143 138 SSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQI 217 (973)
Q Consensus 138 ~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 217 (973)
++|++|+++.+..... ....+..+..+++|+.|+++++.. +.+|..+..+++|++|+|++|.+++.....+.....++
T Consensus 243 ~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp TTCCEEEECBCCCCTT-CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hHHHhhcccccccccc-hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 7777777764322100 011233444444555555544322 23444444455555555555554322221111111111
Q ss_pred HhhcccCCCCCC-CcchhhcCCccccEEEcc-----------CCccccCC-CccccCCCCCCEEeCcCCcccccCccccc
Q 041143 218 LWLNDQDAGGMT-GPIDVVAKMVSLTQLWLH-----------GNQFTGSI-PEDIGALSSLKDLNLNRNQLVGLIPKSLA 284 (973)
Q Consensus 218 ~~l~~~~~~~~~-~~~~~~~~l~~L~~L~L~-----------~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 284 (973)
..|... +.... +....+..+++|++|+|+ .|.+++.. +..+..+++|++|+++.|++++..+..+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 111111 00000 011222446777777777 25555332 22234467777777777777766555554
Q ss_pred c-c-ccCeEEcc----CCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCC--cccCCCCCCCCC
Q 041143 285 N-M-ELDNLVLN----NNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPV--NLVSQWPGNDPC 356 (973)
Q Consensus 285 ~-l-~L~~L~l~----~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--n~~~~~~~~~~~ 356 (973)
. + +|+.|+++ .|.+++.... .+.......+..+..++++. +.+..-
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~--------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~------ 453 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLD--------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDL------ 453 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCH--------------------HHHHHHHHHCTTCCEEEEECCGGGCCHH------
T ss_pred hhCCCCcEEEEeecCCCccccCchHH--------------------HHHHHHHHhCCCCCEEEEecCCCCccHH------
Confidence 4 3 57777775 4555432000 00000000011122222210 000000
Q ss_pred CCCccccccCCCCcccEEecCCCcCCC-ccchhhhCccccceEEccCCccccc-cCccccCcCCCCeeeCCCCcCCCC
Q 041143 357 QGPWLGLSCTSNSKVSIINLPRHNLTG-TLSPSIANLDSLIEIRLGKNSISGT-VPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 357 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
........+++|+.|+|++|++++ .++..+..+++|++|+|++|.|++. ++..+..+++|++|+|++|+++..
T Consensus 454 ---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 ---GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp ---HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ---HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 000001235678888888888887 4455567888888888888888754 344456788888888888888764
No 354
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.7e-19 Score=208.54 Aligned_cols=184 Identities=23% Similarity=0.360 Sum_probs=131.1
Q ss_pred EecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCC
Q 041143 73 QVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNK 152 (973)
Q Consensus 73 ~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 152 (973)
.|..+.+.+.+ .+..|++|+.|+|++|.|... +.|..+++|+.|+|++|+|+.+++ |..+++|+.|+|++|+|++
T Consensus 27 ~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 27 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred hccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 34444444332 256677778888888877764 457777888888888888877776 7778888888888887775
Q ss_pred ccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcc
Q 041143 153 TFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPI 232 (973)
Q Consensus 153 ~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 232 (973)
+| .+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++. ..
T Consensus 102 -----l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~----------------------- 148 (605)
T 1m9s_A 102 -----LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV----------------------- 148 (605)
T ss_dssp -----CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GG-----------------------
T ss_pred -----Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hh-----------------------
Confidence 33 677778888888888887753 3577788888888888887743 22
Q ss_pred hhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcC
Q 041143 233 DVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMG 300 (973)
Q Consensus 233 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g 300 (973)
+..+++|+.|+|++|+|++..| +..+++|+.|+|++|+|++. | .+..+ +|+.|+|++|.+.+
T Consensus 149 --l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 149 --LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred --hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 3457788888888888876555 77788888888888888764 3 45555 68888888887764
No 355
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8e-19 Score=190.15 Aligned_cols=170 Identities=25% Similarity=0.376 Sum_probs=84.3
Q ss_pred ccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccc
Q 041143 88 NQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQ 167 (973)
Q Consensus 88 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~ 167 (973)
..+++|+.|++++|.++.. +.+..+++|++|+|++|+++.+++ |..+++|++|+|++|++++ +| .+..+++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-----~~-~l~~l~~ 113 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-----LS-SLKDLKK 113 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----GG-GGTTCTT
T ss_pred hhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-----Ch-hhccCCC
Confidence 3445555555555555443 334445555555555555555444 4555555555555555543 22 2455555
Q ss_pred cCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEcc
Q 041143 168 LTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLH 247 (973)
Q Consensus 168 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~ 247 (973)
|++|+|++|++++. ..+..+++|++|+|++|++++. .. +..+++|++|+|+
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~-------------------------l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV-------------------------LSRLTKLDTLSLE 164 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-------------------------GGGCTTCSEEECC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-------------------------hccCCCCCEEEcc
Confidence 55555555555532 2355555555555555555432 11 2235555555555
Q ss_pred CCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCc
Q 041143 248 GNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLM 299 (973)
Q Consensus 248 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~ 299 (973)
+|++++..| +..+++|+.|+|++|.+++. + .+..+ +|+.|++++|.++
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 555553332 55555555555555555532 2 23333 4555555555554
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=182.07 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=68.8
Q ss_pred EEEecccCCcccCCcCcccccccceeeccCcccCCCCC--CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 71 QIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP--TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 71 ~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
.|++++++++ .+|..+. ..+++|+|++|+|++.++ .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5666677776 3566553 345677777777777654 2566666666666666666666555555555555555555
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCc
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (973)
+|++. .+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|+
T Consensus 92 ~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 92 RLENV----QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCC----CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ccCcc----CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 55542 2223444444444444444444444444444444444444444444
No 357
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=7.8e-19 Score=190.26 Aligned_cols=172 Identities=27% Similarity=0.404 Sum_probs=153.0
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
.+++.|++++|+++.. +.+..+++|++|+|++|++++..+ +.++++|++|+|++|+++.++. |..+++|++|+|+
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECC
Confidence 4789999999999854 459999999999999999999777 9999999999999999999764 8999999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
+|++++ + +.+..+++|+.|+|++|++++. ..+..+++|++|+|++|++++..| +
T Consensus 121 ~n~i~~-----~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l---------------- 174 (291)
T 1h6t_A 121 HNGISD-----I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L---------------- 174 (291)
T ss_dssp TSCCCC-----C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G----------------
T ss_pred CCcCCC-----C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h----------------
Confidence 999996 3 5789999999999999999975 679999999999999999986543 3
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCc
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIP 280 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p 280 (973)
..+++|+.|+|++|.|++ +| .+..+++|+.|+|++|.++....
T Consensus 175 ---------~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 175 ---------AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ---------TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ---------cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 369999999999999995 55 49999999999999999986433
No 358
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=180.98 Aligned_cols=154 Identities=23% Similarity=0.282 Sum_probs=138.2
Q ss_pred CCCCCCCCCcCeEEeeCC-----------eEEEEEecccCCcccCC-cCcccccccceeeccCcccCCCCC-CCCCCCcc
Q 041143 50 GDDPCGPPPWPHVFCSGN-----------RVTQIQVQNLGLKGPLP-QNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSEL 116 (973)
Q Consensus 50 ~~d~C~~~~w~gv~C~~~-----------~v~~L~L~~~~l~g~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 116 (973)
.++.|. |.|..+.|++. .++.|+|++|+|++..+ ..|.++++|++|+|++|.|+++.+ .|.++++|
T Consensus 5 CP~~C~-C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 5 CPEKCR-CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CCTTCE-EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCE-ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 355565 46999999752 47789999999998765 458999999999999999999888 79999999
Q ss_pred ceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEE
Q 041143 117 EFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALK 196 (973)
Q Consensus 117 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 196 (973)
++|+|++|+|+.+++..|.++++|++|+|++|+|++. .|..|..+++|++|+|++|+|++..|..|..+++|++|+
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV----GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB----CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE----CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 9999999999999999999999999999999999985 678899999999999999999998899999999999999
Q ss_pred ccCCcCcccCCh
Q 041143 197 LSYNRLSGVIPA 208 (973)
Q Consensus 197 Ls~N~l~~~~p~ 208 (973)
|++|.+.+..+-
T Consensus 160 L~~N~l~c~c~l 171 (220)
T 2v70_A 160 LLANPFNCNCYL 171 (220)
T ss_dssp CCSCCEECSGGG
T ss_pred ecCcCCcCCCch
Confidence 999999876553
No 359
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=4.8e-19 Score=198.46 Aligned_cols=177 Identities=23% Similarity=0.218 Sum_probs=120.0
Q ss_pred EEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCC-CCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 71 QIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFS-GLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 71 ~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~-~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
.+++++++|+ .+|..+. ..|+.|+|++|+|++..+ .|. ++++|++|+|++|+|+.+++..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4677777777 4676554 357888888888888777 465 7888888888888888888888888888888888888
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCC
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGM 228 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~ 228 (973)
+|+.. .+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++ +|..+..
T Consensus 99 ~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~---------------- 157 (361)
T 2xot_A 99 HLHTL----DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK---------------- 157 (361)
T ss_dssp CCCEE----CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----------------
T ss_pred cCCcC----CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhc----------------
Confidence 88763 34457777777777777777777667777777777777777777773 4433210
Q ss_pred CCcchhhcCCccccEEEccCCccccCCCccccCCCC--CCEEeCcCCccc
Q 041143 229 TGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSS--LKDLNLNRNQLV 276 (973)
Q Consensus 229 ~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~--L~~L~Ls~N~l~ 276 (973)
.+..+++|+.|+|++|+|++..+..+..+++ |+.|+|++|.+.
T Consensus 158 -----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 -----DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -----CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0123566666666666666433344555554 255555555554
No 360
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.2e-18 Score=180.36 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=130.6
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+.+++++|.++.++..+. ++|+.|+|++|+|+.+++..|..+++|++|+|++|+|++. .|..|.++++|++|+|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEEC
Confidence 468899999998766554 6899999999999999998999999999999999999875 6788899999999999
Q ss_pred ccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc
Q 041143 174 INCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG 253 (973)
Q Consensus 174 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g 253 (973)
++|+|+...+..|.++++|++|+|++|+|++..|..| .++++|++|+|++|+|++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-------------------------QDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCSC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc-------------------------CCCCCCCEEECCCCcCCE
Confidence 9999997767778889999999999999987666654 358889999999999997
Q ss_pred CCCccccCCCCCCEEeCcCCcccc
Q 041143 254 SIPEDIGALSSLKDLNLNRNQLVG 277 (973)
Q Consensus 254 ~~p~~~~~l~~L~~L~Ls~N~l~~ 277 (973)
..+..|..+++|++|+|++|.+..
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 777778888999999999998875
No 361
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.9e-21 Score=232.29 Aligned_cols=348 Identities=14% Similarity=0.027 Sum_probs=241.8
Q ss_pred eEEEEEecccC-Ccc-cCCcCcccccccceeeccCcccCCCC----C-CCCCCCccceeeccCCCCCCCCcc----ccCC
Q 041143 68 RVTQIQVQNLG-LKG-PLPQNFNQLTKLYNLGLQRNKFNGKL----P-TFSGLSELEFAYLDFNEFDTIPSD----FFDG 136 (973)
Q Consensus 68 ~v~~L~L~~~~-l~g-~~~~~~~~l~~L~~L~L~~N~l~~~~----~-~~~~l~~L~~L~L~~N~l~~i~~~----~f~~ 136 (973)
++++|+|+++. ++. .++..+.++++|++|+|++|.+++.. + .+.++++|++|+|++|.++.+... .+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 49999999876 221 12233458899999999999998763 2 245689999999999999866543 3567
Q ss_pred CCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccccc---CCcchhccCCCCCCeEEccCCcCcccCChhhhhh
Q 041143 137 LSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLV---GPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQS 213 (973)
Q Consensus 137 l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 213 (973)
+++|++|+|++|.+.+ +|..+.++++|+.|+++++... +..+..+..+++|+.|+++++... .+|..+. .
T Consensus 219 ~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~ 291 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-F 291 (592)
T ss_dssp CTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-G
T ss_pred CCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-h
Confidence 8999999999999986 6788999999999999875433 345567888999999999987543 5565443 2
Q ss_pred HHHHHhhcccCCCCCCCcc-hhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCc-----------CCcccccCcc
Q 041143 214 LMQILWLNDQDAGGMTGPI-DVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLN-----------RNQLVGLIPK 281 (973)
Q Consensus 214 ~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls-----------~N~l~~~~p~ 281 (973)
..++.+|+...+....... ..+.++++|+.|+|++|...+.++..+..+++|++|+|+ .|.+++....
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 3455556665555322222 446889999999999443344455555778999999999 4677754333
Q ss_pred c-cccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCC----CcccCCCCCCCC
Q 041143 282 S-LANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYP----VNLVSQWPGNDP 355 (973)
Q Consensus 282 ~-~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~n~~~~~~~~~~ 355 (973)
. ...+ +|++|+++.|.+++..+..+. .....+..+++. .|.+...+...
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~- 426 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIG------------------------TYLKNLCDFRLVLLDREERITDLPLDN- 426 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHH------------------------HHCCSCCEEEEEECSCCSCCSSCCCHH-
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHH------------------------hhCCCCcEEEEeecCCCccccCchHHH-
Confidence 3 2334 799999999999864432110 001123333332 22332221100
Q ss_pred CCCCccccccCCCCcccEEecCCC--cCCCccchhhhC-ccccceEEccCCcccc-ccCccccCcCCCCeeeCCCCcCCC
Q 041143 356 CQGPWLGLSCTSNSKVSIINLPRH--NLTGTLSPSIAN-LDSLIEIRLGKNSISG-TVPNNFTELKSLRLLDVSDNNIKP 431 (973)
Q Consensus 356 ~~~~~~~~~~~~~~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~L~~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g 431 (973)
-....+..+++|+.|+|+.+ .+++..+..++. +++|+.|+|++|++++ .++..+..+++|+.|+|++|+|++
T Consensus 427 ----~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 427 ----GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp ----HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred ----HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 00111345789999999854 478777777654 8999999999999987 456667889999999999999875
Q ss_pred C-CC----CCCcccceeecCCcccc
Q 041143 432 P-LP----EFHDTVKLVIDGNPLLV 451 (973)
Q Consensus 432 ~-~p----~~~~~~~~~~~~N~~~c 451 (973)
. ++ .+.++..+++.+|....
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCH
Confidence 4 23 25677889999998543
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=195.35 Aligned_cols=174 Identities=24% Similarity=0.281 Sum_probs=151.2
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccC-CCCCccEEEcccCCCCCccCCCCCcccccccccCeee
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFD-GLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLS 172 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~ 172 (973)
+.+++++|+|+.++..+. +.++.|+|++|+|+.+++..|. ++++|++|+|++|+|+++ .+..|.++++|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc----ChhhccCCCCCCEEE
Confidence 579999999998766554 4589999999999999999998 999999999999999974 456799999999999
Q ss_pred cccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccc
Q 041143 173 LINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFT 252 (973)
Q Consensus 173 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 252 (973)
|++|+|++..+..|.++++|++|+|++|+|++..|..| .++++|+.|+|++|+|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-------------------------EDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-------------------------TTCTTCCEEECCSSCCC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh-------------------------CCcccCCEEECCCCcCC
Confidence 99999998888889999999999999999997766655 46999999999999999
Q ss_pred cCCCcc-c---cCCCCCCEEeCcCCcccccCccccccc---ccCeEEccCCcCc
Q 041143 253 GSIPED-I---GALSSLKDLNLNRNQLVGLIPKSLANM---ELDNLVLNNNLLM 299 (973)
Q Consensus 253 g~~p~~-~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~L~~L~l~~N~l~ 299 (973)
+ +|.. | ..+++|+.|+|++|+|++..+..+..+ .++.|+|++|.+.
T Consensus 150 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 150 R-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp S-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred e-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 5 5554 4 579999999999999998776777766 2689999999986
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2e-18 Score=204.90 Aligned_cols=177 Identities=25% Similarity=0.397 Sum_probs=156.0
Q ss_pred CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
..++.|+|+++++.. ++ .|..|++|+.|+|++|.|++.++ +..+++|+.|+|++|+|+.++ .|..+++|++|+|+
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEec
Confidence 578899999999985 33 69999999999999999999776 999999999999999999986 58999999999999
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCC
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAG 226 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~ 226 (973)
+|+|++ + +.+..+++|+.|+|++|+|++. ..|..+++|+.|+|++|+|++..| +
T Consensus 118 ~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l---------------- 171 (605)
T 1m9s_A 118 HNGISD-----I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L---------------- 171 (605)
T ss_dssp TSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G----------------
T ss_pred CCCCCC-----C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h----------------
Confidence 999996 3 4689999999999999999975 679999999999999999996655 3
Q ss_pred CCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCcccccc
Q 041143 227 GMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLAN 285 (973)
Q Consensus 227 ~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 285 (973)
..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|.+.+.....+..
T Consensus 172 ---------~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 172 ---------AGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp ---------TTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred ---------ccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCccccccc
Confidence 359999999999999996 4 46999999999999999999764444443
No 364
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.3e-18 Score=175.29 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=127.9
Q ss_pred ceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeec
Q 041143 94 YNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSL 173 (973)
Q Consensus 94 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L 173 (973)
+.++++++.++.++..+. ++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.. .+..|..+++|++|+|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i----~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL----PVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEEC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc----ChhhcccCCCcCEEEC
Confidence 446777888887666443 7899999999999999888899999999999999999763 3345688999999999
Q ss_pred ccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCcccc
Q 041143 174 INCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTG 253 (973)
Q Consensus 174 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g 253 (973)
++|+|++..+..|..+++|++|+|++|+|+ .+|..+. ++++|++|+|++|+|++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-------------------------~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-------------------------RLTHLTHLALDQNQLKS 149 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-------------------------GCTTCSEEECCSSCCCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-------------------------cCCCCCEEECCCCcCCc
Confidence 999999877778889999999999999998 6676653 48889999999999986
Q ss_pred CCCccccCCCCCCEEeCcCCcccccCc
Q 041143 254 SIPEDIGALSSLKDLNLNRNQLVGLIP 280 (973)
Q Consensus 254 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p 280 (973)
..+..|..+++|+.|+|++|.+.+..+
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 666778888999999999998886543
No 365
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.2e-18 Score=172.51 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=94.8
Q ss_pred cccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCccccccc
Q 041143 87 FNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSV 166 (973)
Q Consensus 87 ~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~ 166 (973)
...+++|+.|+|++|.++..+ .+..+++|++|+|++|.++.++ .|..+++|++|+|++|++++. .+..+..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSD----KIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGG----GSCCCTTCT
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcc----cChhhcCCC
Confidence 355666666666666666433 5666666666666666665543 466666666666666666653 455666666
Q ss_pred ccCeeecccccccCCcchhccCCCCCCeEEccCCc-CcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEE
Q 041143 167 QLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNR-LSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLW 245 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 245 (973)
+|++|+|++|++++..+..++.+++|++|+|++|+ ++ .+| . +.++++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~-------------------------l~~l~~L~~L~ 165 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-P-------------------------LKTLPELKSLN 165 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-G-------------------------GGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-h-------------------------hcCCCCCCEEE
Confidence 67777777776666666666666777777777666 43 333 1 23466666677
Q ss_pred ccCCccccCCCccccCCCCCCEEeCcCCccc
Q 041143 246 LHGNQFTGSIPEDIGALSSLKDLNLNRNQLV 276 (973)
Q Consensus 246 L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 276 (973)
|++|++++ ++ .+..+++|++|++++|++.
T Consensus 166 l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 76666663 33 5666666666666666665
No 366
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=2.1e-18 Score=183.30 Aligned_cols=139 Identities=20% Similarity=0.196 Sum_probs=106.3
Q ss_pred ccccCcccccCccEEEEEEE-CCCCE--EEEEEeecCCCCh----------------------HHHHHHHHHHHHHHhcC
Q 041143 627 FAQENELGRGGFGTVYKGEL-EDGTK--IAVKRMEAGVTTT----------------------KALDEFQSEIAVLSKVR 681 (973)
Q Consensus 627 ~~~~~~lG~G~fg~Vy~~~~-~~g~~--vavK~~~~~~~~~----------------------~~~~~~~~E~~~l~~l~ 681 (973)
|...+.||+|+||.||+|.. .+|+. ||||+++...... .....+.+|++++.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999988 67989 9999875431110 11236889999999998
Q ss_pred CCce--eeeeeEEEeCCeEEEEEEecCC-C----CHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeee
Q 041143 682 HRHL--VSLLGYSIEGNERLLVYEYMPH-G----ALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIH 754 (973)
Q Consensus 682 h~ni--v~l~~~~~~~~~~~lV~e~~~~-g----~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH 754 (973)
|+++ ..++++ +..++||||+.+ | +|.++... .++..+..++.|++.||.|||. ..+|+|
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~--------~~~~~~~~i~~qi~~~l~~lH~--~~givH 194 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE--------LKELDVEGIFNDVVENVKRLYQ--EAELVH 194 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG--------GGGSCHHHHHHHHHHHHHHHHH--TSCEEC
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc--------cChHHHHHHHHHHHHHHHHHHH--HCCEEe
Confidence 8764 333432 356899999942 4 66654321 2345677899999999999993 569999
Q ss_pred ccCCCCcEEECCCCCEEEeeccccccC
Q 041143 755 RDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 755 ~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
|||||+|||++. .++|+|||+|...
T Consensus 195 rDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 195 ADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SSCSTTSEEESS--SEEECCCTTCEET
T ss_pred CCCCHHHEEEcC--cEEEEECcccccC
Confidence 999999999998 9999999999754
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.3e-18 Score=179.60 Aligned_cols=167 Identities=18% Similarity=0.244 Sum_probs=102.2
Q ss_pred EEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 69 VTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 69 v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
++.++|.++++++.. .+..+++|++|+|++|.|+... .+..+++|++|+|++|+|+.+++ |.++++|++|+|++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 334455555555332 4666666777777776666543 56666667777777777666665 666667777777777
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCC
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGM 228 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~ 228 (973)
++++ +|... . ++|+.|+|++|+|++. ..+..+++|++|+|++|++++. + .
T Consensus 96 ~l~~-----l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~------------------- 145 (263)
T 1xeu_A 96 RLKN-----LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-M------------------- 145 (263)
T ss_dssp CCSC-----CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-G-------------------
T ss_pred ccCC-----cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-H-------------------
Confidence 6664 33222 2 6666667777666642 2466666667777766666632 2 1
Q ss_pred CCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccccc
Q 041143 229 TGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGL 278 (973)
Q Consensus 229 ~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~ 278 (973)
+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++.
T Consensus 146 ------l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 146 ------LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 23466666666666666644 4566666666666666666654
No 368
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.8e-20 Score=225.52 Aligned_cols=349 Identities=13% Similarity=0.116 Sum_probs=207.4
Q ss_pred CCeEEEEEecccCCcccCCcCcc-cccccceeeccCc-ccCCC-CCC-CCCCCccceeeccCCCCCCCCcccc----CCC
Q 041143 66 GNRVTQIQVQNLGLKGPLPQNFN-QLTKLYNLGLQRN-KFNGK-LPT-FSGLSELEFAYLDFNEFDTIPSDFF----DGL 137 (973)
Q Consensus 66 ~~~v~~L~L~~~~l~g~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~-~~~l~~L~~L~L~~N~l~~i~~~~f----~~l 137 (973)
..++++|+|+++.+++..+..+. .+++|++|+|++| .++.. ++. +.++++|++|+|++|.++......+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35799999999999887777775 7899999999998 55542 333 4478999999999999887655444 367
Q ss_pred CCccEEEcccCC--CCCccCCCCCcccccccccCeeecccc-cccCCcchhccCCCCCCeEEccCCc-------------
Q 041143 138 SSVRVLALDYNP--FNKTFGWSIPDSLANSVQLTNLSLINC-NLVGPLPDFLGTLPSLAALKLSYNR------------- 201 (973)
Q Consensus 138 ~~L~~L~Ls~N~--l~~~~~~~ip~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~------------- 201 (973)
++|++|+|++|. ++.. .++..+.++++|++|+|++| .+.+ ++..+.++++|++|+++.+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFS---ALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CCCCEEECTTCCSCCCHH---HHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred CcCcEEEecccCCcCCHH---HHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 799999999987 2211 12223345689999999988 4444 67777777778887765542
Q ss_pred -------------CcccCChhhhh---hHHHHHhhcccCCCCCCC-cchhhcCCccccEEEccCCccccC-CCccccCCC
Q 041143 202 -------------LSGVIPASFGQ---SLMQILWLNDQDAGGMTG-PIDVVAKMVSLTQLWLHGNQFTGS-IPEDIGALS 263 (973)
Q Consensus 202 -------------l~~~~p~~~~~---~~~~~~~l~~~~~~~~~~-~~~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~ 263 (973)
+.......+.. ...++..|+...+..... ....+.++++|+.|+|++| ++.. ++.....++
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 11111111111 123334444444442211 1233567899999999988 4422 233334578
Q ss_pred CCCEEeC---------cCCcccccCcccccc-c-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchh
Q 041143 264 SLKDLNL---------NRNQLVGLIPKSLAN-M-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNV 332 (973)
Q Consensus 264 ~L~~L~L---------s~N~l~~~~p~~~~~-l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (973)
+|++|+| +.|.+++.....+.. + +|+.|++..|.+++..+..+. .
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~------------------------~ 394 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA------------------------R 394 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH------------------------H
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH------------------------h
Confidence 8999988 345665443333332 3 688888888888753322100 0
Q ss_pred hhhhccCCCCC--C----cccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhC-ccccceEEccCCcc
Q 041143 333 LLDFLGGVNYP--V----NLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIAN-LDSLIEIRLGKNSI 405 (973)
Q Consensus 333 ~~~~l~~l~~~--~----n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l 405 (973)
.+..+..+++. . +.+...+.. .-....+..+++|+.|+|++ .+++..+..++. +++|+.|+|++|.+
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~-----~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLD-----IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTH-----HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred hCCCcceeEeecccCCCcccccCCchh-----hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence 01112222222 0 111111000 00000123456777777766 666666666655 67777777777777
Q ss_pred ccccCccc-cCcCCCCeeeCCCCcCCCCCC-----CCCcccceeecCCcc
Q 041143 406 SGTVPNNF-TELKSLRLLDVSDNNIKPPLP-----EFHDTVKLVIDGNPL 449 (973)
Q Consensus 406 ~g~~p~~~-~~l~~L~~L~Ls~N~l~g~~p-----~~~~~~~~~~~~N~~ 449 (973)
++..+..+ ..+++|+.|+|++|.+++... .+.++..+++.+|+.
T Consensus 469 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 66555444 557777777777777753322 244566677777654
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.2e-18 Score=180.74 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=148.6
Q ss_pred cccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCccccccccc
Q 041143 89 QLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQL 168 (973)
Q Consensus 89 ~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L 168 (973)
++.+++.|+|++|.+++.. .+..+++|++|+|++|+|+.++ .+..+++|++|+|++|+|++ ++. +..+++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISD-----LSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-----CGG-GTTCSSC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCC-----Chh-hccCCCC
Confidence 6788899999999999766 6888999999999999999987 58899999999999999997 455 9999999
Q ss_pred CeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccC
Q 041143 169 TNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHG 248 (973)
Q Consensus 169 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 248 (973)
++|+|++|+|++ +|. +.. ++|++|+|++|++++. + . +.++++|+.|+|++
T Consensus 88 ~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~-------------------------l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-S-------------------------LIHLKNLEILSIRN 137 (263)
T ss_dssp CEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-G-------------------------GTTCTTCCEEECTT
T ss_pred CEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-h-------------------------hcCcccccEEECCC
Confidence 999999999996 443 333 9999999999999853 3 2 34699999999999
Q ss_pred CccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCC
Q 041143 249 NQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGP 301 (973)
Q Consensus 249 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~ 301 (973)
|+|++. + .+..+++|+.|+|++|++++. ..+..+ +|+.|++++|.+.+.
T Consensus 138 N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 138 NKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 999954 4 799999999999999999976 667776 899999999999865
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.5e-19 Score=210.24 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=131.1
Q ss_pred CCCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccc-------------ccCCcchhccCCCCCCeEE-ccCC
Q 041143 135 DGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCN-------------LVGPLPDFLGTLPSLAALK-LSYN 200 (973)
Q Consensus 135 ~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N 200 (973)
..+++|+.|+|++|+++. +|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-----Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-----LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHHh-----hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 567788888888888873 78888888888888887765 4566777777777887777 6666
Q ss_pred cCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCc
Q 041143 201 RLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIP 280 (973)
Q Consensus 201 ~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p 280 (973)
.+. .++... +..+... .+ ....|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .+|
T Consensus 421 ~~~-~L~~l~---------l~~n~i~-------~l-~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp 479 (567)
T 1dce_A 421 YLD-DLRSKF---------LLENSVL-------KM-EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALP 479 (567)
T ss_dssp HHH-HHHHHH---------HHHHHHH-------HH-HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCC
T ss_pred ccc-hhhhhh---------hhccccc-------cc-CccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccc
Confidence 554 111111 1000000 00 01247778888888874 665 788888888888888887 667
Q ss_pred cccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCC
Q 041143 281 KSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGP 359 (973)
Q Consensus 281 ~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~ 359 (973)
..+..+ +|+.|+|++|.|++ +|.
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp~------------------------------------------------------- 503 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VDG------------------------------------------------------- 503 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CGG-------------------------------------------------------
T ss_pred hhhhcCCCCCEEECCCCCCCC-Ccc-------------------------------------------------------
Confidence 777766 67777777777764 331
Q ss_pred ccccccCCCCcccEEecCCCcCCCcc-chhhhCccccceEEccCCccccccCcc---ccCcCCCCeeeC
Q 041143 360 WLGLSCTSNSKVSIINLPRHNLTGTL-SPSIANLDSLIEIRLGKNSISGTVPNN---FTELKSLRLLDV 424 (973)
Q Consensus 360 ~~~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~---~~~l~~L~~L~L 424 (973)
+..+++|+.|+|++|+|++.+ |..|+.+++|+.|+|++|+|++..|.. +..+++|+.|||
T Consensus 504 -----l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 -----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 234456666666666666665 666666666666777666666544322 233566666654
No 371
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=8e-20 Score=215.73 Aligned_cols=203 Identities=18% Similarity=0.190 Sum_probs=128.6
Q ss_pred ccccccceeeccCcccCCCCCCCCCCCccceeeccCCC-------------CCCCCccccCCCCCccEEE-cccCCCCCc
Q 041143 88 NQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNE-------------FDTIPSDFFDGLSSVRVLA-LDYNPFNKT 153 (973)
Q Consensus 88 ~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~-------------l~~i~~~~f~~l~~L~~L~-Ls~N~l~~~ 153 (973)
..+++|+.|+|++|.|+.+++.+.++++|+.|++++|. +...++..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 55677778888888877665577777778777776664 2333344444445555444 3333221
Q ss_pred cCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcch
Q 041143 154 FGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPID 233 (973)
Q Consensus 154 ~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (973)
.|..+.+++|.|+...+ ..|+.|+|++|+|++ +|. +.
T Consensus 424 -------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~---------------------- 460 (567)
T 1dce_A 424 -------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LE---------------------- 460 (567)
T ss_dssp -------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GG----------------------
T ss_pred -------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-cc----------------------
Confidence 22223333344442111 247777777777774 454 42
Q ss_pred hhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCC-CCCCCCCcc
Q 041143 234 VVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPI-PKFKAGNVT 311 (973)
Q Consensus 234 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~-p~~~~~~~~ 311 (973)
++++|+.|+|++|+|+ .+|..|+.+++|+.|+|++|+|++ +| .+..+ +|+.|+|++|.|++.. |.
T Consensus 461 ---~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~------- 527 (567)
T 1dce_A 461 ---QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ------- 527 (567)
T ss_dssp ---GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-------
T ss_pred ---ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-------
Confidence 4777777888877777 777777777778888888887776 45 66666 6777788777777654 43
Q ss_pred cccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccch---h
Q 041143 312 YDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSP---S 388 (973)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~---~ 388 (973)
.+..+++|+.|+|++|.+++.+|. .
T Consensus 528 ----------------------------------------------------~l~~l~~L~~L~L~~N~l~~~~~~~~~l 555 (567)
T 1dce_A 528 ----------------------------------------------------PLVSCPRLVLLNLQGNSLCQEEGIQERL 555 (567)
T ss_dssp ----------------------------------------------------GGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred ----------------------------------------------------HHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence 234566777888888888776553 2
Q ss_pred hhCccccceEEc
Q 041143 389 IANLDSLIEIRL 400 (973)
Q Consensus 389 ~~~l~~L~~L~L 400 (973)
+..+++|+.|+|
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 445778888764
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.7e-17 Score=167.20 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=133.9
Q ss_pred CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccC
Q 041143 109 TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGT 188 (973)
Q Consensus 109 ~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 188 (973)
....+++|++|+|++|.|+.++ .+..+++|++|+|++|.++. +..+..+++|++|+|++|++++..+..|+.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred ChhhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 4467889999999999999888 48999999999999997773 458899999999999999999888999999
Q ss_pred CCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCc-cccCCCccccCCCCCCE
Q 041143 189 LPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQ-FTGSIPEDIGALSSLKD 267 (973)
Q Consensus 189 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~L~~ 267 (973)
+++|++|+|++|++++..|..+ ..+++|++|+|++|. ++ .+| .+..+++|++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l-------------------------~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKI-------------------------NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHH-------------------------TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHHHH-------------------------hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 9999999999999997666655 469999999999998 66 666 7999999999
Q ss_pred EeCcCCcccccCccccccc-ccCeEEccCCcCcC
Q 041143 268 LNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMG 300 (973)
Q Consensus 268 L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g 300 (973)
|+|++|++++. + .+..+ +|+.|++++|++.+
T Consensus 164 L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 164 LNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred EECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 99999999964 3 66666 79999999999864
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.3e-17 Score=166.80 Aligned_cols=133 Identities=23% Similarity=0.299 Sum_probs=117.6
Q ss_pred EEEEecccCCcccCCcCcccccccceeeccCcccCCCCCC--CCCCCccceeeccCCCCCCCCccccCCCCCccEEEccc
Q 041143 70 TQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPT--FSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDY 147 (973)
Q Consensus 70 ~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~ 147 (973)
+.|++++++++ .+|..+.. +|++|+|++|+|++.++. |.++++|++|+|++|+|+.+++..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45677777775 67776654 899999999999998874 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChh
Q 041143 148 NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPAS 209 (973)
Q Consensus 148 N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 209 (973)
|+|++. .+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+..
T Consensus 88 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 88 NKIKEI----SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCCEE----CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCcc----CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 999985 5667899999999999999999999999999999999999999999876643
No 374
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=2.5e-19 Score=215.49 Aligned_cols=327 Identities=12% Similarity=0.068 Sum_probs=189.3
Q ss_pred CeEEEEEeccc-CCccc-CCcCcccccccceeeccCcccCCCCC----C-CCCCCccceeeccCCCCCCCCcccc----C
Q 041143 67 NRVTQIQVQNL-GLKGP-LPQNFNQLTKLYNLGLQRNKFNGKLP----T-FSGLSELEFAYLDFNEFDTIPSDFF----D 135 (973)
Q Consensus 67 ~~v~~L~L~~~-~l~g~-~~~~~~~l~~L~~L~L~~N~l~~~~~----~-~~~l~~L~~L~L~~N~l~~i~~~~f----~ 135 (973)
.++++|+|.+| .++.. ++..+.++++|++|+|++|.+++..+ . ...+++|++|+|++|. ..+....+ .
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVT 208 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHH
Confidence 57999999988 56543 44445689999999999999887543 2 3367899999999997 44444433 3
Q ss_pred CCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccc--------------------------cc----CCcchh
Q 041143 136 GLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCN--------------------------LV----GPLPDF 185 (973)
Q Consensus 136 ~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~--------------------------l~----~~~p~~ 185 (973)
.+++|++|+|++|.... .++..+..+++|+.|++..+. +. +.++..
T Consensus 209 ~~~~L~~L~L~~~~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE----KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HCTTCCEEECCTTSCHH----HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred hCCCCcEEecCCCCcHH----HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 46899999999882211 144445555555555543331 11 112333
Q ss_pred ccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcc-hhhcCCccccEEEcc---------CCccccCC
Q 041143 186 LGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPI-DVVAKMVSLTQLWLH---------GNQFTGSI 255 (973)
Q Consensus 186 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~---------~N~l~g~~ 255 (973)
+..+++|++|+|++|.+++.....+.....++..|....+ ...... .....+++|+.|+|. .|.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 3355666666666666553322221111122222222222 111111 122347788888873 34555433
Q ss_pred Ccccc-CCCCCCEEeCcCCcccccCcccccc-c-ccCeEEcc--C----CcCcCCCCCCCCCCcccccCcccCCCCCccc
Q 041143 256 PEDIG-ALSSLKDLNLNRNQLVGLIPKSLAN-M-ELDNLVLN--N----NLLMGPIPKFKAGNVTYDSNSFCQSEPGIEC 326 (973)
Q Consensus 256 p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~-l-~L~~L~l~--~----N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 326 (973)
...+. .+++|++|+++.|.+++..+..+.. + +|+.|+++ + |.+++.... ..
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--------------------~~ 423 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--------------------IG 423 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH--------------------HH
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh--------------------hH
Confidence 33333 3778888888888887665555542 3 68888887 3 333311000 00
Q ss_pred CCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccC-CCCcccEEecCCCcCCCccchhh-hCccccceEEccCCc
Q 041143 327 APDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCT-SNSKVSIINLPRHNLTGTLSPSI-ANLDSLIEIRLGKNS 404 (973)
Q Consensus 327 ~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~ 404 (973)
..........+..+++.. .+..- -. ..+. .+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~---------~~-~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDK---------VF-EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHH---------HH-HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred HHHHHhhCCCccEEeecC-cccHH---------HH-HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 000001112233333322 00000 00 0011 26789999999999988777666 779999999999999
Q ss_pred cccccCc-cccCcCCCCeeeCCCCcCC
Q 041143 405 ISGTVPN-NFTELKSLRLLDVSDNNIK 430 (973)
Q Consensus 405 l~g~~p~-~~~~l~~L~~L~Ls~N~l~ 430 (973)
+++.... .+..+++|+.|+|++|+++
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 9765554 4456899999999999984
No 375
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.2e-16 Score=161.66 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=96.4
Q ss_pred ceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCc-ccccccccCeeecccccccCCcchhccCCCCCCeE
Q 041143 117 EFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPD-SLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAAL 195 (973)
Q Consensus 117 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 195 (973)
+.|++++|+|+.+|...+. +|++|+|++|+|++. .+. .|..+++|++|+|++|+|++..|..|.++++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~---~l~~L~l~~n~i~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRI----SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT---TCSEEECCSCCCCSB----CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccCCCC---CCCEEECCCCcCCcc----CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 4566666666666655433 677777777777653 222 37777888888888888887777788888888888
Q ss_pred EccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcc
Q 041143 196 KLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQL 275 (973)
Q Consensus 196 ~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 275 (973)
+|++|+|++..+..| .++++|++|+|++|+|++..|..|..+++|++|+|++|.+
T Consensus 84 ~Ls~N~l~~~~~~~~-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 84 QLGENKIKEISNKMF-------------------------LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSCCCCEECSSSS-------------------------TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCccCHHHh-------------------------cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 888888876665544 3577888888888888877788888888888888888888
Q ss_pred cccCc
Q 041143 276 VGLIP 280 (973)
Q Consensus 276 ~~~~p 280 (973)
.+..+
T Consensus 139 ~c~c~ 143 (192)
T 1w8a_A 139 NCNCH 143 (192)
T ss_dssp CCSGG
T ss_pred cCcCc
Confidence 87654
No 376
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=8.1e-17 Score=196.18 Aligned_cols=194 Identities=18% Similarity=0.173 Sum_probs=123.0
Q ss_pred EEEEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 69 VTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 69 v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
+..+++..+.+. ..+..|..++.|+.|+|++|.|..+++.+.++++|++|+|++|+|+.+|. .|.+|++|++|+|++|
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHN 280 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTS
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCC
Confidence 333344444444 45788999999999999999999776677899999999999999998874 5799999999999999
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCC
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGM 228 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~ 228 (973)
+|+. +|..|++|++|++|+|++|.|+ .+|..|++|++|++|+|++|+|++.+|..+......
T Consensus 281 ~l~~-----lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------ 342 (727)
T 4b8c_D 281 RLTS-----LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------ 342 (727)
T ss_dssp CCSS-----CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------
T ss_pred cCCc-----cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------
Confidence 9994 8999999999999999999998 778889999999999999999999999887542211
Q ss_pred CCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCC--------cccccCccccccc-ccCeEEccCCcCc
Q 041143 229 TGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRN--------QLVGLIPKSLANM-ELDNLVLNNNLLM 299 (973)
Q Consensus 229 ~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l-~L~~L~l~~N~l~ 299 (973)
+..|+|++|.++|.+|.. |..|++++| .|.+..+..+..+ .+....++.|.+.
T Consensus 343 ------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 343 ------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------HHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 122567777777777643 444555555 3333333333333 3555667777765
Q ss_pred C
Q 041143 300 G 300 (973)
Q Consensus 300 g 300 (973)
+
T Consensus 405 ~ 405 (727)
T 4b8c_D 405 Q 405 (727)
T ss_dssp G
T ss_pred c
Confidence 4
No 377
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=2.5e-16 Score=157.11 Aligned_cols=138 Identities=22% Similarity=0.314 Sum_probs=117.2
Q ss_pred CCCCCCCcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCC
Q 041143 52 DPCGPPPWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIP 130 (973)
Q Consensus 52 d~C~~~~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~ 130 (973)
+.|. |.|.+|.|+..++ + .+|..+ .++|++|+|++|++++.++ .|.++++|++|+|++|+|+.++
T Consensus 3 ~~C~-C~~~~l~~~~~~l----------~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (177)
T 2o6r_A 3 SRCS-CSGTEIRCNSKGL----------T-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68 (177)
T ss_dssp TTCE-EETTEEECCSSCC----------S-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCE-eCCCEEEecCCCC----------c-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence 4564 3577777765544 3 345443 3689999999999998877 5789999999999999999999
Q ss_pred ccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCC
Q 041143 131 SDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIP 207 (973)
Q Consensus 131 ~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 207 (973)
+..|..+++|++|+|++|+|++. .+..+..+++|++|+|++|+|++..+..|..+++|++|+|++|++.+..|
T Consensus 69 ~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 69 DGVFDKLTKLTILYLHENKLQSL----PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhHccCCCccCEEECCCCCcccc----CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999999999999999999974 44567899999999999999998777778999999999999999997765
No 378
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=2.4e-16 Score=155.71 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=123.4
Q ss_pred CeEEEEEecccCCc-ccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLK-GPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~-g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..++.|+|++|+++ +.+|..+..+++|++|+|++|.|++. +.|..+++|++|+|++|+++...+..+..+++|++|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 46899999999998 88999999999999999999999988 88999999999999999999977788888999999999
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcc---hhccCCCCCCeEEccCCcCcccCCh
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLP---DFLGTLPSLAALKLSYNRLSGVIPA 208 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~ 208 (973)
++|++++. ..+..+..+++|+.|+|++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 103 s~N~l~~~---~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 103 SGNKLKDI---STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp BSSSCCSS---GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred cCCccCcc---hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999973 122788999999999999999997666 58999999999999999997 5554
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=154.46 Aligned_cols=130 Identities=23% Similarity=0.280 Sum_probs=115.6
Q ss_pred EEEecccCCcccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCC
Q 041143 71 QIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPF 150 (973)
Q Consensus 71 ~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l 150 (973)
.+++++++|+ .+|..+. ++|++|+|++|.|+.++..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4667777777 5676654 689999999999997766899999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCC
Q 041143 151 NKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIP 207 (973)
Q Consensus 151 ~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 207 (973)
++. .|..|..+++|++|+|++|+|+...+..|..+++|++|+|++|.+.....
T Consensus 91 ~~i----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 91 RCI----PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CBC----CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEe----CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 985 56689999999999999999998777789999999999999999986443
No 380
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=6.7e-16 Score=169.63 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=100.9
Q ss_pred CccccCcccccCccEEEEEEECCCCEEEEEEeecCCCC---------------hH-----HHHHHHHHHHHHHhcCCCce
Q 041143 626 NFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTT---------------TK-----ALDEFQSEIAVLSKVRHRHL 685 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~---------------~~-----~~~~~~~E~~~l~~l~h~ni 685 (973)
-|.+.+.||+|+||.||+|...+|+.||||+++..... .. ......+|...|.++.+..+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38899999999999999999999999999987532110 00 01123457777777755544
Q ss_pred eeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEEC
Q 041143 686 VSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLD 765 (973)
Q Consensus 686 v~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~ 765 (973)
....-+... ..+|||||++++.|.++. .......++.|++.+|.||| +.+||||||||.|||++
T Consensus 176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~-----------~~~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~ 239 (397)
T 4gyi_A 176 PVPEPIAQS--RHTIVMSLVDALPMRQVS-----------SVPDPASLYADLIALILRLA---KHGLIHGDFNEFNILIR 239 (397)
T ss_dssp SCCCEEEEE--TTEEEEECCSCEEGGGCC-----------CCSCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred CCCeeeecc--CceEEEEecCCccHhhhc-----------ccHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEe
Confidence 322222222 237999999998875332 11234578899999999999 78999999999999998
Q ss_pred CCC----------CEEEeecccccc
Q 041143 766 DDY----------RAKVSDFGLVKL 780 (973)
Q Consensus 766 ~~~----------~~kl~DfGla~~ 780 (973)
+++ .+.|+||+-+..
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEE
T ss_pred CCCCcccccccccceEEEEeCCccc
Confidence 876 389999997654
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.8e-15 Score=149.37 Aligned_cols=108 Identities=22% Similarity=0.172 Sum_probs=68.9
Q ss_pred ccccceeeccCcccC-CCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccc
Q 041143 90 LTKLYNLGLQRNKFN-GKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQ 167 (973)
Q Consensus 90 l~~L~~L~L~~N~l~-~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~ 167 (973)
.++|++|+|++|.++ +.+| .+..+++|++|+|++|+|+.+ ..|..+++|++|+|++|++++. +|..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG----LDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC----CCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH----HHHHHhhCCC
Confidence 366777777777777 4444 456677777777777777766 5566666666666666666653 4555555666
Q ss_pred cCeeecccccccCCc-chhccCCCCCCeEEccCCcCc
Q 041143 168 LTNLSLINCNLVGPL-PDFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 168 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 203 (973)
|++|+|++|+|++.. +..+..+++|++|+|++|+++
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 666666666666432 245666666666666666665
No 382
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=150.87 Aligned_cols=129 Identities=29% Similarity=0.352 Sum_probs=95.9
Q ss_pred ceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEE
Q 041143 117 EFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALK 196 (973)
Q Consensus 117 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 196 (973)
+.+++++|+|+.+|...+ ++|++|+|++|+|+. +|..|.++++|+.|+|++|+|++..+..|.++++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 456666666666665543 467777777777773 677778888888888888888877777788888888888
Q ss_pred ccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccc
Q 041143 197 LSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLV 276 (973)
Q Consensus 197 Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 276 (973)
|++|+|++..|..| .++++|++|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 85 Ls~N~l~~i~~~~f-------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRLRCIPPRTF-------------------------DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTT-------------------------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCccCEeCHHHh-------------------------CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88888886555444 35788888888888888555556788888888888888887
Q ss_pred cc
Q 041143 277 GL 278 (973)
Q Consensus 277 ~~ 278 (973)
..
T Consensus 140 C~ 141 (193)
T 2wfh_A 140 CD 141 (193)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 383
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=5.1e-16 Score=171.49 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred CCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCC
Q 041143 262 LSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGV 340 (973)
Q Consensus 262 l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 340 (973)
+++|+.|+|++|+++...+..|.++ +|+.|+|.+| ++ .|+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~----------------------------------- 267 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQR----------------------------------- 267 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTT-----------------------------------
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHH-----------------------------------
Confidence 6777777777777776666677776 6777777776 43 22221
Q ss_pred CCCCcccCCCCCCCCCCCCccccccCCCCccc-EEecCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCC
Q 041143 341 NYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVS-IINLPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSL 419 (973)
Q Consensus 341 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L 419 (973)
.|..+.+|+ .|+|++ .+....+..|.++++|+.|+|++|+++..-+..|.++++|
T Consensus 268 -----------------------aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 268 -----------------------VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp -----------------------TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred -----------------------HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 234556777 888877 6776677788999999999999999987777789999999
Q ss_pred CeeeC
Q 041143 420 RLLDV 424 (973)
Q Consensus 420 ~~L~L 424 (973)
+.|+.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 88864
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=6.6e-16 Score=149.20 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=105.9
Q ss_pred CeEEEEEecccCCc-ccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLK-GPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~-g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
.+++.|++++|+++ +.+|..+..+++|++|+|++|.+++. +.+.++++|++|+|++|+|+...+..+..+++|++|+|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 46788888888888 78888888888999999999888887 77888888899999988888866677778888888888
Q ss_pred ccCCCCCccCCCCCcccccccccCeeecccccccCCcc---hhccCCCCCCeEEccC
Q 041143 146 DYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLP---DFLGTLPSLAALKLSY 199 (973)
Q Consensus 146 s~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 199 (973)
++|++++. ..+..+..+++|++|+|++|.+++..+ ..+..+++|++|++++
T Consensus 96 s~N~i~~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDL---STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSH---HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCCh---HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888863 123678888888888888888887665 5788888888888764
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=9.3e-15 Score=145.59 Aligned_cols=132 Identities=23% Similarity=0.244 Sum_probs=78.1
Q ss_pred ceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEE
Q 041143 117 EFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALK 196 (973)
Q Consensus 117 ~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 196 (973)
+.+++++|+++.+|...+ ++|++|+|++|++++. .+..|..+++|++|+|++|+|++..+..|.++++|++|+
T Consensus 10 ~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TEEECCSSCCSSCCTTCC---TTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEecCCCCccCCCCCC---CCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 345555555555553322 4555555555555542 223445566666666666666655555566667777777
Q ss_pred ccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccc
Q 041143 197 LSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLV 276 (973)
Q Consensus 197 Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 276 (973)
|++|+|++..+..+ .++++|++|+|++|+|++..+..+..+++|++|+|++|.+.
T Consensus 83 l~~N~l~~~~~~~~-------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 83 LHENKLQSLPNGVF-------------------------DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCccccCHHHh-------------------------hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77777664433332 34667777777777777544444566777777777777777
Q ss_pred ccCc
Q 041143 277 GLIP 280 (973)
Q Consensus 277 ~~~p 280 (973)
+..|
T Consensus 138 ~~~~ 141 (177)
T 2o6r_A 138 CSCP 141 (177)
T ss_dssp CCHH
T ss_pred ccCc
Confidence 6544
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=5.1e-15 Score=142.90 Aligned_cols=132 Identities=21% Similarity=0.159 Sum_probs=112.0
Q ss_pred cccccceeeccCcccC-CCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCccccccc
Q 041143 89 QLTKLYNLGLQRNKFN-GKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSV 166 (973)
Q Consensus 89 ~l~~L~~L~L~~N~l~-~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~ 166 (973)
..++|+.|++++|.++ +.+| .+..+++|++|+|++|+|+.+ ..|..+++|++|+|++|++++. +|..+..++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~ 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG----LEVLAEKCP 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC----THHHHHHCT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch----HHHHhhhCC
Confidence 3578999999999999 5555 679999999999999999998 7799999999999999999974 777888899
Q ss_pred ccCeeecccccccCC-cchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEE
Q 041143 167 QLTNLSLINCNLVGP-LPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLW 245 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 245 (973)
+|++|+|++|.+++. .+..+..+++|++|+|++|++++..+-.. ..+..+++|+.|+
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----------------------~~~~~l~~L~~L~ 146 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE----------------------NVFKLLPQLTYLD 146 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH----------------------HHHHHCTTCCEET
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH----------------------HHHHHCCCccccc
Confidence 999999999999974 44889999999999999999996544100 1134589999999
Q ss_pred ccC
Q 041143 246 LHG 248 (973)
Q Consensus 246 L~~ 248 (973)
+++
T Consensus 147 l~d 149 (149)
T 2je0_A 147 GYD 149 (149)
T ss_dssp TBC
T ss_pred CCC
Confidence 864
No 387
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.9e-16 Score=161.08 Aligned_cols=107 Identities=22% Similarity=0.326 Sum_probs=57.3
Q ss_pred ccccccceeeccCcccCCCCC-------CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCc
Q 041143 88 NQLTKLYNLGLQRNKFNGKLP-------TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPD 160 (973)
Q Consensus 88 ~~l~~L~~L~L~~N~l~~~~~-------~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~ 160 (973)
.....++.++|+.|.+++..| .|..+++|++|+|++|+|+.++ .|.++++|++|+|++|+++. +|.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~-----l~~ 87 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK-----IEN 87 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS-----CSS
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc-----ccc
Confidence 344555555666666655444 2444555555555555555544 44555555555555555552 455
Q ss_pred ccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCc
Q 041143 161 SLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 161 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 203 (973)
.+..+++|++|+|++|+|++ +| .+..+++|++|+|++|+++
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence 55555555555555555553 33 3555555555555555555
No 388
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=8.5e-15 Score=145.70 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=114.5
Q ss_pred CeEEEEEecccCCcccCCcCccccc-ccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCccEEEc
Q 041143 67 NRVTQIQVQNLGLKGPLPQNFNQLT-KLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLAL 145 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L 145 (973)
..++.|+|++|+++. ++ .+..+. +|++|+|++|.|++. +.|.++++|++|+|++|+|+.+++..|..+++|++|+|
T Consensus 19 ~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 468999999999995 44 466665 999999999999987 78999999999999999999999998899999999999
Q ss_pred ccCCCCCccCCCCCc--ccccccccCeeecccccccCCcch----hccCCCCCCeEEccCCcCc
Q 041143 146 DYNPFNKTFGWSIPD--SLANSVQLTNLSLINCNLVGPLPD----FLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 146 s~N~l~~~~~~~ip~--~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~ 203 (973)
++|+|+. +|. .+..+++|+.|+|++|.++. +|. .+..+++|++||+++|.+.
T Consensus 96 ~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999975 666 78999999999999999984 555 4899999999999999876
No 389
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.7e-14 Score=143.60 Aligned_cols=137 Identities=21% Similarity=0.181 Sum_probs=115.7
Q ss_pred cCcccccccceeeccCcccCCCCCCCCCCC-ccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcc-c
Q 041143 85 QNFNQLTKLYNLGLQRNKFNGKLPTFSGLS-ELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDS-L 162 (973)
Q Consensus 85 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~-~ 162 (973)
+.+.++.+|+.|+|++|+++.. +.+..+. +|++|+|++|+|+.+ ..|..+++|++|+|++|+|++ +|.. +
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~ 84 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-----IGEGLD 84 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-----ECSCHH
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-----cCcchh
Confidence 4577889999999999999975 6666655 999999999999998 579999999999999999996 5544 5
Q ss_pred ccccccCeeecccccccCCcch--hccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCcc
Q 041143 163 ANSVQLTNLSLINCNLVGPLPD--FLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVS 240 (973)
Q Consensus 163 ~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 240 (973)
..+++|++|+|++|+|+ .+|. .+..+++|++|+|++|+++ .+|..-. ..+..+++
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~---------------------~~~~~l~~ 141 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRL---------------------YVIYKVPQ 141 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHH---------------------HHHHHCTT
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHH---------------------HHHHHCCc
Confidence 89999999999999997 5665 8999999999999999998 5555310 12346899
Q ss_pred ccEEEccCCccc
Q 041143 241 LTQLWLHGNQFT 252 (973)
Q Consensus 241 L~~L~L~~N~l~ 252 (973)
|+.|++++|.+.
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 999999999876
No 390
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.8e-16 Score=161.14 Aligned_cols=161 Identities=22% Similarity=0.274 Sum_probs=131.0
Q ss_pred CeEEEEEecccCCcccCCc------CcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCccccCCCCCc
Q 041143 67 NRVTQIQVQNLGLKGPLPQ------NFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFFDGLSSV 140 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g~~~~------~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 140 (973)
.+|+.++++.+.+.|.+|. .|..+++|++|+|++|.|++. |.+.++++|++|+|++|+|+.++. .+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L 95 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN-LDAVADTL 95 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCcccccc-hhhcCCcC
Confidence 4567777788888888776 899999999999999999995 489999999999999999998875 57778999
Q ss_pred cEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcc-hhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHh
Q 041143 141 RVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLP-DFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILW 219 (973)
Q Consensus 141 ~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~ 219 (973)
++|+|++|++++ +| .+..+++|++|+|++|+|++..+ ..+..+++|++|+|++|++++.+|..-...
T Consensus 96 ~~L~L~~N~l~~-----l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~------ 163 (198)
T 1ds9_A 96 EELWISYNQIAS-----LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS------ 163 (198)
T ss_dssp SEEEEEEEECCC-----HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH------
T ss_pred CEEECcCCcCCc-----CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH------
Confidence 999999999996 45 68999999999999999995433 579999999999999999987766420000
Q ss_pred hcccCCCCCCCcchhhcCCccccEEEccCCccc
Q 041143 220 LNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFT 252 (973)
Q Consensus 220 l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 252 (973)
......+..+++|+.|| +|.++
T Consensus 164 ---------~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 164 ---------EYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ---------HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ---------HHHHHHHHhCCCcEEEC--CcccC
Confidence 00112345689999887 77776
No 391
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=5.9e-13 Score=150.10 Aligned_cols=242 Identities=11% Similarity=0.124 Sum_probs=141.2
Q ss_pred cccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccC
Q 041143 91 TKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLT 169 (973)
Q Consensus 91 ~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~ 169 (973)
..++.+.+.+ .++.+.. +|.+. +|+.+.|..| ++.|...+|.+. +|+.+.|.. .++.+ -...|.++++|+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I----~~~aF~~c~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL----KEDIFYYCYNLK 183 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE----CSSTTTTCTTCC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe----hHHHhhCcccCC
Confidence 4555555543 3444433 56654 5777776655 666777777663 577777764 44432 234566677777
Q ss_pred eeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCC
Q 041143 170 NLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGN 249 (973)
Q Consensus 170 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 249 (973)
.++|.+|+++......|. ..+|+.+.|..| ++ .++. .+|.++++|+.|+|..|
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~------------------------~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGS------------------------QAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECT------------------------TTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehh------------------------hHhhCCCCCCEEecCCC
Confidence 777777776644444454 466777776633 44 2222 23445666777777654
Q ss_pred ccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcC----CCCCCCCCCcccccCcccCCCCCc
Q 041143 250 QFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMG----PIPKFKAGNVTYDSNSFCQSEPGI 324 (973)
Q Consensus 250 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g----~~p~~~~~~~~~~~~~~~~~~~~~ 324 (973)
++..-..+|.+ .+|+.++| .|.++......|.++ +|+.+++.+|.+.. .++.
T Consensus 237 -l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-------------------- 293 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-------------------- 293 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--------------------
T ss_pred -ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--------------------
Confidence 44233344544 56777776 344554555566665 67777776665541 0111
Q ss_pred ccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceEEccCCc
Q 041143 325 ECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRLGKNS 404 (973)
Q Consensus 325 ~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 404 (973)
-.+..+.+|+.++|. |.+.......|.++.+|+.|+|.+|
T Consensus 294 --------------------------------------~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 294 --------------------------------------YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp --------------------------------------TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-
T ss_pred --------------------------------------HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-
Confidence 023445667777777 3466555666777777777777544
Q ss_pred cccccCccccCcCCCCeeeCCCCcCCCC
Q 041143 405 ISGTVPNNFTELKSLRLLDVSDNNIKPP 432 (973)
Q Consensus 405 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 432 (973)
++..-+..|.++ +|+.|++++|.+...
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 554556677777 777777777766543
No 392
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=9.6e-14 Score=153.16 Aligned_cols=259 Identities=14% Similarity=0.052 Sum_probs=174.5
Q ss_pred CeEEEEEecccCCc--ccCCcCcccccccceeeccCcccCCCCCCCCC--------CCccceeeccCCCCCCCCccccCC
Q 041143 67 NRVTQIQVQNLGLK--GPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSG--------LSELEFAYLDFNEFDTIPSDFFDG 136 (973)
Q Consensus 67 ~~v~~L~L~~~~l~--g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------l~~L~~L~L~~N~l~~i~~~~f~~ 136 (973)
.+++.|+|++|.+. ......+ +.++.+.+..|.|.. -.|.+ +++|+.|+|.+ +++.|+..+|.+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~~--~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVPA--YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEECT--TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred ccCeEEecCcceeEEecCccccc---cccccccccccccCH--HHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 46899999999987 3332223 235666666664321 15777 99999999998 899999999999
Q ss_pred CCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccc----cCCcchhccCCCCCC-eEEccCCcCcccCChhhh
Q 041143 137 LSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNL----VGPLPDFLGTLPSLA-ALKLSYNRLSGVIPASFG 211 (973)
Q Consensus 137 l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l----~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~ 211 (973)
+++|+.|+|++|.+..+ -+..|..+.++..|.+..+.. .......|.++.+|+ .+.+.... .++..+.
T Consensus 123 ~~~L~~l~l~~n~i~~i----~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~ 195 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNL----LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIM 195 (329)
T ss_dssp CTTCCEEEBCCSSCCEE----CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHH
T ss_pred CcccceEEcCCCCcccc----chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHh
Confidence 99999999999988864 456777777787777766432 223344566666666 44443321 2222221
Q ss_pred hhHHHHH---hhcccCCCCCCCcchh-hcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-
Q 041143 212 QSLMQIL---WLNDQDAGGMTGPIDV-VAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM- 286 (973)
Q Consensus 212 ~~~~~~~---~l~~~~~~~~~~~~~~-~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l- 286 (973)
....... .+..... ........ ...+++|+.|+|++|+++...+..|.++++|+.|+|.+| ++...+..|.++
T Consensus 196 ~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 1000000 0000000 00000011 123789999999999999555667999999999999998 887777889988
Q ss_pred ccC-eEEccCCcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCcccccc
Q 041143 287 ELD-NLVLNNNLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSC 365 (973)
Q Consensus 287 ~L~-~L~l~~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~ 365 (973)
+|+ .|++.+ .++...+. .|
T Consensus 274 ~L~~~l~l~~-~l~~I~~~-----------------------------------------------------------aF 293 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFG-----------------------------------------------------------AF 293 (329)
T ss_dssp TCCEEEEECT-TCCEECTT-----------------------------------------------------------TT
T ss_pred hccEEEEEcc-cceEEchh-----------------------------------------------------------hh
Confidence 699 999987 55422111 34
Q ss_pred CCCCcccEEecCCCcCCCccchhhhCccccceEEc
Q 041143 366 TSNSKVSIINLPRHNLTGTLSPSIANLDSLIEIRL 400 (973)
Q Consensus 366 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 400 (973)
..+.+|+.|+|+.|++....+..|.++++|+.|+.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 56789999999999999999999999999999874
No 393
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=2.8e-13 Score=133.66 Aligned_cols=89 Identities=25% Similarity=0.247 Sum_probs=49.5
Q ss_pred ccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCe
Q 041143 115 ELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAA 194 (973)
Q Consensus 115 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 194 (973)
+|++|+|++|+|+.+++..|.++++|++|+|++|+|+++ .+..|.++++|++|+|++|+|++..+..|.++++|++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCE
Confidence 344444444444444444444455555555555555432 2233455566666666666666555556777777777
Q ss_pred EEccCCcCcccCC
Q 041143 195 LKLSYNRLSGVIP 207 (973)
Q Consensus 195 L~Ls~N~l~~~~p 207 (973)
|+|++|+++...+
T Consensus 107 L~L~~N~~~c~c~ 119 (170)
T 3g39_A 107 IWLLNNPWDCACS 119 (170)
T ss_dssp EECCSSCBCTTBG
T ss_pred EEeCCCCCCCCch
Confidence 7777777775443
No 394
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=5.4e-13 Score=131.58 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=93.5
Q ss_pred EEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 70 TQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 70 ~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
+.|++++++|+ .+|..+. ++|++|+|++|+|++..| .|.++++|++|+|++|+|+.+++..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45677788887 4776664 899999999999999977 6999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCc
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPL 182 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~ 182 (973)
+|++. .+..|..+++|++|+|++|.++...
T Consensus 89 ~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSI----PRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCC----CTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEe----CHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99974 4456899999999999999998543
No 395
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7.3e-13 Score=131.13 Aligned_cols=104 Identities=28% Similarity=0.363 Sum_probs=60.1
Q ss_pred EEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccC
Q 041143 70 TQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYN 148 (973)
Q Consensus 70 ~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N 148 (973)
+.+++++++++ .+|..+. ++|++|+|++|+|++.+| .|.++++|++|+|++|+|+.+++..|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~-------------- 77 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF-------------- 77 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------------
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--------------
Confidence 45666666664 4555443 555666666666555544 34555555555555555555444444
Q ss_pred CCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcc
Q 041143 149 PFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSG 204 (973)
Q Consensus 149 ~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (973)
.++++|++|+|++|+|++..+..|..+++|++|+|++|++..
T Consensus 78 --------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 78 --------------DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp --------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred --------------CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 455555555555555554444556677777777777777763
No 396
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=8.3e-13 Score=130.70 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=89.7
Q ss_pred CCCCCCCCcCeEEeeC-----------CeEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccce
Q 041143 51 DDPCGPPPWPHVFCSG-----------NRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEF 118 (973)
Q Consensus 51 ~d~C~~~~w~gv~C~~-----------~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~ 118 (973)
+..|. |.+..+.|++ ..++.|+|++|.|++..|..|.++++|++|+|++|+|+++++ .|.++++|++
T Consensus 7 P~~C~-C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 7 PSQCS-CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp CTTSE-ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCE-ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 34454 3467788864 368899999999999999999999999999999999999887 4789999999
Q ss_pred eeccCCCCCCCCccccCCCCCccEEEcccCCCCC
Q 041143 119 AYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNK 152 (973)
Q Consensus 119 L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 152 (973)
|+|++|+|+.+++..|..+++|++|+|++|++..
T Consensus 86 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9999999999999999999999999999999885
No 397
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.38 E-value=4.7e-12 Score=142.69 Aligned_cols=261 Identities=13% Similarity=0.159 Sum_probs=197.8
Q ss_pred EEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEccc
Q 041143 69 VTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDY 147 (973)
Q Consensus 69 v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~ 147 (973)
++.+.+.+ +++.+-..+|.+. +|+.++|.+| ++.+.. +|.+. +|+.+.|.. .++.|...+|.++.+|+.++|++
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 33444433 4555556678874 8999999877 776665 78884 799999986 89999999999999999999999
Q ss_pred CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCC
Q 041143 148 NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGG 227 (973)
Q Consensus 148 N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~ 227 (973)
|+++. ++.....+.+|+.+.|.++ ++.+....|.++++|+.|+|..| ++ .++.
T Consensus 190 n~l~~-----I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~------------------- 242 (401)
T 4fdw_A 190 TKITK-----LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQ------------------- 242 (401)
T ss_dssp SCCSE-----ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECT-------------------
T ss_pred CcceE-----echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Cccc-------------------
Confidence 99996 5655555799999999854 77677889999999999999875 44 3332
Q ss_pred CCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCccc-----ccCccccccc-ccCeEEccCCcCcCC
Q 041143 228 MTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLV-----GLIPKSLANM-ELDNLVLNNNLLMGP 301 (973)
Q Consensus 228 ~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l-~L~~L~l~~N~l~g~ 301 (973)
.+|.+ .+|+.+.|. |.++..-...|.++++|+.+++.+|.+. ...+..|.++ +|+.++|.++ ++ .
T Consensus 243 -----~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~ 313 (401)
T 4fdw_A 243 -----EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-I 313 (401)
T ss_dssp -----TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-E
T ss_pred -----ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-E
Confidence 22344 688999994 5566455778899999999999888775 3455677777 7888888743 43 1
Q ss_pred CCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcC
Q 041143 302 IPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNL 381 (973)
Q Consensus 302 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 381 (973)
++.. .+..+.+|+.|+|..| +
T Consensus 314 I~~~----------------------------------------------------------aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 314 LGQG----------------------------------------------------------LLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp ECTT----------------------------------------------------------TTTTCCSCCEEEECTT-C
T ss_pred Ehhh----------------------------------------------------------hhcCCCCccEEEECcc-c
Confidence 2210 2345678899999655 7
Q ss_pred CCccchhhhCccccceEEccCCccccccCccccCcC-CCCeeeCCCCcCC
Q 041143 382 TGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELK-SLRLLDVSDNNIK 430 (973)
Q Consensus 382 ~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~ 430 (973)
...-...|.++ +|+.|++.+|.+....+..|..++ +++.|.+..|.+.
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 76667789999 999999999998866677888885 7889998887653
No 398
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=4.3e-14 Score=157.83 Aligned_cols=189 Identities=20% Similarity=0.150 Sum_probs=116.6
Q ss_pred ccccceeeccCcccCCCCC-C----CC-CCCccceeeccCCCCCCCCcc-ccCCCCCccEEEcccCCCCCccCCCCCccc
Q 041143 90 LTKLYNLGLQRNKFNGKLP-T----FS-GLSELEFAYLDFNEFDTIPSD-FFDGLSSVRVLALDYNPFNKTFGWSIPDSL 162 (973)
Q Consensus 90 l~~L~~L~L~~N~l~~~~~-~----~~-~l~~L~~L~L~~N~l~~i~~~-~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~ 162 (973)
+++|+.|+|++|.|+.... . +. ..++|++|+|++|.|+..... .+..+++|++|+|++|+|+......+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777765322 1 22 235777778877777643222 223456788888888887653111111222
Q ss_pred -ccccccCeeecccccccC----CcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcC
Q 041143 163 -ANSVQLTNLSLINCNLVG----PLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAK 237 (973)
Q Consensus 163 -~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 237 (973)
...++|+.|+|++|.|+. .++..+..+++|++|+|++|+|+......+. ..+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~---------------------~~L~~ 209 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA---------------------AQLDR 209 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH---------------------HHGGG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH---------------------HHHhc
Confidence 235678888888888864 3445567788899999999988743222222 23445
Q ss_pred CccccEEEccCCccccC----CCccccCCCCCCEEeCcCCcccccCccccccc---c---cCeEE--ccCCcCc
Q 041143 238 MVSLTQLWLHGNQFTGS----IPEDIGALSSLKDLNLNRNQLVGLIPKSLANM---E---LDNLV--LNNNLLM 299 (973)
Q Consensus 238 l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~---L~~L~--l~~N~l~ 299 (973)
.++|+.|+|++|.|++. ++..+...++|++|+|++|.|+......+..+ . ++.+. +..|.+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 67889999999988753 34455567889999999998886655555433 2 55555 5566554
No 399
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=7.4e-12 Score=139.19 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=62.5
Q ss_pred CcCeEEeeCCeEEEEEecccCCcccCCcCcccccccceeeccC-cccCCCCC-CCCCCCccceeeccCCCCCCCCccccC
Q 041143 58 PWPHVFCSGNRVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQR-NKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFD 135 (973)
Q Consensus 58 ~w~gv~C~~~~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~ 135 (973)
.|..|.|++. |+|+ .+|. |..+++|++|+|++ |.|+++++ .|.+|++|++|+|++|+|+.+++.+|.
T Consensus 9 ~~~~v~~~~~---------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 9 GSSGLRCTRD---------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp SSSCEECCSS---------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred cCCEEEcCCC---------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 3766666542 1444 3666 77777777777774 77766655 456666666666666666555555555
Q ss_pred CCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCccc
Q 041143 136 GLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGV 205 (973)
Q Consensus 136 ~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 205 (973)
+|++|++|+|++| +|++..+..|..++ |+.|+|.+|+|...
T Consensus 78 ~l~~L~~L~l~~N----------------------------~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 78 FTPRLSRLNLSFN----------------------------ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCSCCCEEECCSS----------------------------CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCcCCCEEeCCCC----------------------------ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 5555555555555 44443344444444 66777777776643
No 400
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.8e-11 Score=135.99 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=70.3
Q ss_pred eeeccCC-CCCCCCccccCCCCCccEEEccc-CCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeE
Q 041143 118 FAYLDFN-EFDTIPSDFFDGLSSVRVLALDY-NPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAAL 195 (973)
Q Consensus 118 ~L~L~~N-~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 195 (973)
.++++++ +|+.||. |..+++|++|+|++ |+|+++ .+..|.+|++|+.|+|++|+|++..|..|.+|++|++|
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4566666 6777776 77777788888875 877763 44678888999999999999998889999999999999
Q ss_pred EccCCcCcccCChhhh
Q 041143 196 KLSYNRLSGVIPASFG 211 (973)
Q Consensus 196 ~Ls~N~l~~~~p~~~~ 211 (973)
+|++|+|++..+..|.
T Consensus 86 ~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQ 101 (347)
T ss_dssp ECCSSCCSCCCSTTTC
T ss_pred eCCCCccceeCHHHcc
Confidence 9999999965555553
No 401
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.22 E-value=3e-11 Score=128.48 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=114.2
Q ss_pred HHHHhcCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCCeE
Q 041143 620 LRKVTQNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGNER 698 (973)
Q Consensus 620 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~ 698 (973)
++.....|.....++.|+++.||++... ++.+++|+...... .....+.+|+++++.+. |..+.++++++...+..
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~--~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~ 85 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYK--GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS 85 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGT--TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccC--CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCce
Confidence 3455578888888999999999999765 68899999864211 11235889999999985 67788999999998899
Q ss_pred EEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc------------------------------
Q 041143 699 LLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA------------------------------ 748 (973)
Q Consensus 699 ~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~------------------------------ 748 (973)
|+||||++|.+|.+.+. +......++.+++++|+.||...
T Consensus 86 ~lv~e~i~G~~l~~~~~----------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (263)
T 3tm0_A 86 NLLMSEADGVLCSEEYE----------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDC 155 (263)
T ss_dssp EEEEECCSSEEHHHHCC----------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSG
T ss_pred EEEEEecCCeehhhccC----------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccc
Confidence 99999999999876521 11234478899999999999610
Q ss_pred --------------------------cCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 749 --------------------------RQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 749 --------------------------~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
...++|+|++|.||+++++..+.|+||+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 156 ENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp GGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1458999999999999876667799998764
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=6e-13 Score=148.55 Aligned_cols=164 Identities=20% Similarity=0.141 Sum_probs=123.2
Q ss_pred CCccceeeccCCCCCCCCccccC-----CCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhc-
Q 041143 113 LSELEFAYLDFNEFDTIPSDFFD-----GLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFL- 186 (973)
Q Consensus 113 l~~L~~L~L~~N~l~~i~~~~f~-----~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l- 186 (973)
++.|+.|+|++|.|+......|. ..++|++|+|++|.++.. .+......+++|+.|+|++|+|+......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~---~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA---GLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH---HHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH---HHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 46799999999999865544433 337999999999998753 122223457789999999999985444444
Q ss_pred ----cCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccC----CCcc
Q 041143 187 ----GTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGS----IPED 258 (973)
Q Consensus 187 ----~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~----~p~~ 258 (973)
...++|++|+|++|.|+......+. ..+..+++|++|+|++|.|++. ++..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------------~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLM---------------------EGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHH---------------------HHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHH---------------------HHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 3578999999999999743333332 2345688999999999999853 3566
Q ss_pred ccCCCCCCEEeCcCCcccccCccccc----cc-ccCeEEccCCcCcC
Q 041143 259 IGALSSLKDLNLNRNQLVGLIPKSLA----NM-ELDNLVLNNNLLMG 300 (973)
Q Consensus 259 ~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l-~L~~L~l~~N~l~g 300 (973)
+...++|++|+|++|.|+......+. .. +|++|+|++|.|++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 78889999999999999865433333 22 79999999999874
No 403
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.12 E-value=6.3e-11 Score=125.80 Aligned_cols=136 Identities=21% Similarity=0.193 Sum_probs=99.2
Q ss_pred CccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCc--eeeeeeEEEeCCeEEEEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRH--LVSLLGYSIEGNERLLVYE 703 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lV~e 703 (973)
.+....+.+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+.+.+ +.+++++...++..++|||
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~-----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e 95 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG-----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG 95 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC-----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEE
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc-----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEE
Confidence 34433333456669999998877888999987543 1235788999999986545 4568888888788999999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc-----------------------------------
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA----------------------------------- 748 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~----------------------------------- 748 (973)
|++|.+|. ... . ....++.++++.|..||...
T Consensus 96 ~i~G~~l~--~~~--------~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (264)
T 1nd4_A 96 EVPGQDLL--SSH--------L---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEH 162 (264)
T ss_dssp CCSSEETT--TSC--------C---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGG
T ss_pred ecCCcccC--cCc--------C---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhc
Confidence 99998884 110 1 12356777788888888431
Q ss_pred --------------------cCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 749 --------------------RQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 749 --------------------~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
...++|+|++|.||++++++.+.|+|||.+.
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 163 QGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp TTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred cCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1239999999999999887667799999765
No 404
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=6.9e-10 Score=125.44 Aligned_cols=294 Identities=14% Similarity=0.094 Sum_probs=150.0
Q ss_pred CCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCC-----
Q 041143 83 LPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGW----- 156 (973)
Q Consensus 83 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~----- 156 (973)
-..+|.++++|+.+.|.. .++.+.. +|.++++|+.++|..+ ++.|...+|.++.+|+.+.+..+- ..+...
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecc
Confidence 344566666666666643 2444433 5666666666666533 555555666666555555543321 000000
Q ss_pred ------------C-CCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhccc
Q 041143 157 ------------S-IPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQ 223 (973)
Q Consensus 157 ------------~-ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~ 223 (973)
. -...|.++++|+.+.+.++. .......|.++.+|+.+++..| ++......|.. ...+..+...
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~-~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE-CILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT-CTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcc-ccccceeecC
Confidence 0 12356677788888886553 3255567777888888877766 33222222211 1111111111
Q ss_pred CCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCC
Q 041143 224 DAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPI 302 (973)
Q Consensus 224 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~ 302 (973)
... .. ..+.+....+|+.+.+..+. +..-...|..+.+|+.+.+..+... .....|... .++.+.+..+.+.
T Consensus 217 ~~~-~~-i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--- 289 (394)
T 4fs7_A 217 NSL-YY-LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--- 289 (394)
T ss_dssp TTC-CE-ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---
T ss_pred CCc-eE-eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---
Confidence 110 00 11222334677777776543 3233456777778888887766443 334455544 4555555444321
Q ss_pred CCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCC
Q 041143 303 PKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLT 382 (973)
Q Consensus 303 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 382 (973)
... |.+ ...+..+.++.+ +..++. ..+.++.+|+.++|..+ +.
T Consensus 290 -~~~----------F~~--------------~~~L~~i~l~~~-i~~I~~----------~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 290 -EKT----------FYG--------------CSSLTEVKLLDS-VKFIGE----------EAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp -TTT----------TTT--------------CTTCCEEEECTT-CCEECT----------TTTTTCTTCCEECCCTT-CC
T ss_pred -ccc----------ccc--------------cccccccccccc-cceech----------hhhcCCCCCCEEEeCCc-cc
Confidence 100 000 001111111111 111111 13455667777777643 55
Q ss_pred CccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCC
Q 041143 383 GTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDN 427 (973)
Q Consensus 383 ~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N 427 (973)
..-...|.++.+|+.++|..| ++-.-..+|.++.+|+.++|..|
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 555667888888888888766 65455567888888888887654
No 405
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=8.3e-09 Score=116.50 Aligned_cols=292 Identities=13% Similarity=0.068 Sum_probs=185.0
Q ss_pred ccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccc---
Q 041143 102 KFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCN--- 177 (973)
Q Consensus 102 ~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~--- 177 (973)
.++.+.. +|.++.+|+.+.|.. .++.|...+|.++++|+.++|..+ ++.+ -...|.++.+|+.+.+..+-
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I----~~~aF~~c~~L~~i~~p~~l~~i 131 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMI----GRCTFSGCYALKSILLPLMLKSI 131 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE----CTTTTTTCTTCCCCCCCTTCCEE
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEc----cchhhcccccchhhcccCceeee
Confidence 3555544 799999999999974 599999999999999999999865 5432 23467777777777665431
Q ss_pred ------------------ccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCc
Q 041143 178 ------------------LVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMV 239 (973)
Q Consensus 178 ------------------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 239 (973)
+.......|.++++|+.+.+.++..+ .....|. ....+..+... .+.......+|.++.
T Consensus 132 ~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~-~c~~L~~i~l~-~~~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFS-GCGKLKSIKLP-RNLKIIRDYCFAECI 208 (394)
T ss_dssp CTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTT-TCTTCCBCCCC-TTCCEECTTTTTTCT
T ss_pred cceeeecccccccccCccccccchhhhcccCCCcEEecCCccce-ecccccc-CCCCceEEEcC-CCceEeCchhhcccc
Confidence 11123457889999999999876432 3333332 11222222221 123344557889999
Q ss_pred cccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCcccccCccc
Q 041143 240 SLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNVTYDSNSFC 318 (973)
Q Consensus 240 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~~~~~~~~~ 318 (973)
.|+.+.+..+... +........+|+.+.+..+ ++......|... .++.+.+..+... +.... |.
T Consensus 209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~----------F~ 273 (394)
T 4fs7_A 209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR--IGGSL----------FY 273 (394)
T ss_dssp TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--ECSCT----------TT
T ss_pred ccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--eeccc----------cc
Confidence 9999999887654 4455566688999998644 343444556555 7888888777543 11110 00
Q ss_pred CCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhhCccccceE
Q 041143 319 QSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIANLDSLIEI 398 (973)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 398 (973)
.. ..+..+....+.+.. ..+..+.+|+.+.+..+ +.......|.++.+|+.+
T Consensus 274 ~~--------------~~l~~~~~~~~~i~~-------------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 274 NC--------------SGLKKVIYGSVIVPE-------------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TC--------------TTCCEEEECSSEECT-------------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cc--------------cccceeccCceeecc-------------ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 00 001111111111111 13456678899998765 666667789999999999
Q ss_pred EccCCccccccCccccCcCCCCeeeCCCCcCCCCCC-CC---CcccceeecCC
Q 041143 399 RLGKNSISGTVPNNFTELKSLRLLDVSDNNIKPPLP-EF---HDTVKLVIDGN 447 (973)
Q Consensus 399 ~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~---~~~~~~~~~~N 447 (973)
+|.++ ++-.-..+|.++.+|+.++|..| ++..-. .| .++..+.+..|
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 99755 76555788999999999999877 543222 22 34455555443
No 406
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.94 E-value=2.5e-09 Score=119.20 Aligned_cols=143 Identities=13% Similarity=0.205 Sum_probs=106.3
Q ss_pred ccCcccccCccEEEEEEECCCCEEEEEEee--cCCCChHHHHHHHHHHHHHHhcC--CCceeeeeeEEEeC---CeEEEE
Q 041143 629 QENELGRGGFGTVYKGELEDGTKIAVKRME--AGVTTTKALDEFQSEIAVLSKVR--HRHLVSLLGYSIEG---NERLLV 701 (973)
Q Consensus 629 ~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~--~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lV 701 (973)
..+.|+.|.++.||+....+ ..+++|+.. ... .......+.+|+++++.+. +..+.++++++.+. +..++|
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~-~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v 119 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSK-LLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI 119 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC-----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCC-CCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence 45678999999999998764 678888765 321 1123457889999999997 45578889888776 457999
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc---------------------------------
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA--------------------------------- 748 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~--------------------------------- 748 (973)
|||++|..+.+. ....++..++..++.++++.|+.||...
T Consensus 120 me~v~G~~l~~~-------~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3dxp_A 120 MEFVSGRVLWDQ-------SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETE 192 (359)
T ss_dssp EECCCCBCCCCT-------TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCS
T ss_pred EEecCCeecCCC-------ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCc
Confidence 999998777421 1134677888899999999999999620
Q ss_pred ----------------------cCCeeeccCCCCcEEECCCCC--EEEeecccccc
Q 041143 749 ----------------------RQTFIHRDLKSSNILLDDDYR--AKVSDFGLVKL 780 (973)
Q Consensus 749 ----------------------~~~ivH~Dikp~Nill~~~~~--~kl~DfGla~~ 780 (973)
...++|+|+++.||+++.++. +.|+||+.+..
T Consensus 193 ~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 193 SIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp CCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred CChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999998864
No 407
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=2.4e-10 Score=126.37 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=133.7
Q ss_pred CeEEEEEecccCCcc-c-------CCcCcccccccceeeccCcccCC---------CCC-CCCCCCccceeeccCCCCCC
Q 041143 67 NRVTQIQVQNLGLKG-P-------LPQNFNQLTKLYNLGLQRNKFNG---------KLP-TFSGLSELEFAYLDFNEFDT 128 (973)
Q Consensus 67 ~~v~~L~L~~~~l~g-~-------~~~~~~~l~~L~~L~L~~N~l~~---------~~~-~~~~l~~L~~L~L~~N~l~~ 128 (973)
.+|+.|.+...++.| . +..++..+++|+.|.+..+.... .+. .+..+++|+.|+|++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 468888888776653 2 23456778999999997764321 122 34667899999998874223
Q ss_pred CCccccCCCCCccEEEcccCCCCCccCCCCCcccc--cccccCeeeccc--ccccCC-----cchhc--cCCCCCCeEEc
Q 041143 129 IPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLA--NSVQLTNLSLIN--CNLVGP-----LPDFL--GTLPSLAALKL 197 (973)
Q Consensus 129 i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~--~l~~L~~L~L~~--N~l~~~-----~p~~l--~~l~~L~~L~L 197 (973)
+++ +. +++|+.|+|..|.+... ....+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|
T Consensus 187 l~~--~~-~~~L~~L~L~~~~l~~~----~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 187 IGK--KP-RPNLKSLEIISGGLPDS----VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CCS--CB-CTTCSEEEEECSBCCHH----HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred ecc--cc-CCCCcEEEEecCCCChH----HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 333 33 88999999998887642 222333 688999999863 232211 11223 35789999999
Q ss_pred cCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccC----CCccccCCCCCCEEeCcCC
Q 041143 198 SYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGS----IPEDIGALSSLKDLNLNRN 273 (973)
Q Consensus 198 s~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~Ls~N 273 (973)
.+|.+....+..+.. ...+++|++|+|+.|.|++. ++..+..+++|+.|+|++|
T Consensus 260 ~~~~i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp ESCTTHHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 999987544333321 01378999999999999864 3444456789999999999
Q ss_pred cccccCcccccccccCeEEccCCc
Q 041143 274 QLVGLIPKSLANMELDNLVLNNNL 297 (973)
Q Consensus 274 ~l~~~~p~~~~~l~L~~L~l~~N~ 297 (973)
.++...-..+...-...+++++|+
T Consensus 318 ~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 318 YLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp BCCHHHHHHHHHHCCSEEECCSBC
T ss_pred cCCHHHHHHHHHHcCCEEEecCCc
Confidence 888554444443113568888876
No 408
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.87 E-value=1.4e-09 Score=118.26 Aligned_cols=186 Identities=16% Similarity=0.222 Sum_probs=121.0
Q ss_pred cCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCc--eeeeeeEEEeCC---eEEEEEE
Q 041143 630 ENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRH--LVSLLGYSIEGN---ERLLVYE 703 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lV~e 703 (973)
.+.++.|.+..||+.. ..+++|+.. .......+.+|.++++.+. +.. +.+++.++...+ ..|+|||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~----~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPK----HSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEES----SHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecC----CcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEc
Confidence 4568999999999863 568888753 2344567899999999884 333 334444443333 3489999
Q ss_pred ecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc-----------------------------------
Q 041143 704 YMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA----------------------------------- 748 (973)
Q Consensus 704 ~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~----------------------------------- 748 (973)
|++|..+..... ..++..++..++.++++.++.||...
T Consensus 97 ~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (304)
T 3sg8_A 97 KIKGVPLTPLLL-------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQ 169 (304)
T ss_dssp CCCCEECCHHHH-------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHH
T ss_pred ccCCeECCcccc-------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCccc
Confidence 999988865332 23566777788888888888888510
Q ss_pred --------------------cCCeeeccCCCCcEEECC--CCCEEEeeccccccCCCCCccee-------------cccc
Q 041143 749 --------------------RQTFIHRDLKSSNILLDD--DYRAKVSDFGLVKLAPDGEKSVV-------------TRLA 793 (973)
Q Consensus 749 --------------------~~~ivH~Dikp~Nill~~--~~~~kl~DfGla~~~~~~~~~~~-------------~~~~ 793 (973)
...++|+|++|.||++++ +..+.|+||+.+........-.. ..+.
T Consensus 170 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l 249 (304)
T 3sg8_A 170 MKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKIL 249 (304)
T ss_dssp HHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHH
Confidence 135899999999999998 55688999998864322110000 0000
Q ss_pred cccCccc-ccccccCcCCCchhHHhHHHHHHHHHhCCCCC
Q 041143 794 GTFGYLA-PEYAVMGKITTKADVFSYGVVLMELLTGLAAL 832 (973)
Q Consensus 794 gt~~y~a-PE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~ 832 (973)
..+++.. |+.... .....+.|++|+++|++.+|+.+|
T Consensus 250 ~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 250 NHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1111122 222111 122368999999999999997654
No 409
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.79 E-value=1.1e-07 Score=107.17 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=86.3
Q ss_pred eEEEEEecccCCcccCCcCcccccccceeeccCcc---cCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEE
Q 041143 68 RVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNK---FNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVL 143 (973)
Q Consensus 68 ~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~---l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 143 (973)
.++++.+.+ +++.+-..+|.++++|+.+.+..|. ++.+.. +|.++.+|+.+.+..+ ++.|...+|.++.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 377787765 4776777889999999999998875 555444 7888999998888654 788888899999999999
Q ss_pred EcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCC
Q 041143 144 ALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYN 200 (973)
Q Consensus 144 ~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 200 (973)
.+..+. ..+ -...|..+.+|+.+.+.++ ++..-...|.+ .+|+.+.+..+
T Consensus 143 ~lp~~~-~~I----~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 143 TIPEGV-TSV----ADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp ECCTTC-CEE----CTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred ccccee-eee----cccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence 987543 321 2345667777877777654 33233334433 45666655443
No 410
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.77 E-value=1.7e-07 Score=105.80 Aligned_cols=299 Identities=11% Similarity=0.142 Sum_probs=169.2
Q ss_pred CcccCCcCcccc-cccceeeccCcccCCCCC-CCCCCCccceeeccCCC---CCCCCccccCCCCCccEEEcccCCCCCc
Q 041143 79 LKGPLPQNFNQL-TKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNE---FDTIPSDFFDGLSSVRVLALDYNPFNKT 153 (973)
Q Consensus 79 l~g~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~---l~~i~~~~f~~l~~L~~L~Ls~N~l~~~ 153 (973)
++.+-..+|.+. ..|+.+.+-.+ ++.+.. +|.++++|+.+.+..|. ++.|...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 344456778887 46999999754 776655 89999999999998874 88899999999999999988766 4432
Q ss_pred cCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcch
Q 041143 154 FGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPID 233 (973)
Q Consensus 154 ~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (973)
-...|..+.+|+.+.+..+ +.......|.++.+|+.+.+..+ ++..-...|.... +..+... .........
T Consensus 129 ----~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~--l~~i~ip-~~~~~i~~~ 199 (394)
T 4gt6_A 129 ----DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTA--LTQIHIP-AKVTRIGTN 199 (394)
T ss_dssp ----CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCC--CSEEEEC-TTCCEECTT
T ss_pred ----hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccc--eeEEEEC-Ccccccccc
Confidence 2357788999999999764 44466778999999999999766 4423333332211 1111111 112222345
Q ss_pred hhcCCccccEEEccCCccccCCCcccc--------------CCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcC
Q 041143 234 VVAKMVSLTQLWLHGNQFTGSIPEDIG--------------ALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLL 298 (973)
Q Consensus 234 ~~~~l~~L~~L~L~~N~l~g~~p~~~~--------------~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l 298 (973)
+|.++.+|.......+... .+...+. ....+..+.+. +.++......|.+. .|+.+.+.++..
T Consensus 200 af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred hhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc
Confidence 6777777777776655443 1111111 11222333322 12222223344443 455555544332
Q ss_pred cCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCC
Q 041143 299 MGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPR 378 (973)
Q Consensus 299 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 378 (973)
. +.... |.+ ...|..+.++. .+..++.. .|..+.+|+.++|..
T Consensus 278 ~--I~~~a----------F~~--------------c~~L~~i~l~~-~i~~I~~~----------aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 278 S--IGTGA----------FMN--------------CPALQDIEFSS-RITELPES----------VFAGCISLKSIDIPE 320 (394)
T ss_dssp E--ECTTT----------TTT--------------CTTCCEEECCT-TCCEECTT----------TTTTCTTCCEEECCT
T ss_pred e--ecCcc----------ccc--------------ccccccccCCC-cccccCce----------eecCCCCcCEEEeCC
Confidence 1 11100 000 00011111110 11111111 244556677777764
Q ss_pred CcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCCcC
Q 041143 379 HNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDNNI 429 (973)
Q Consensus 379 N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 429 (973)
+ ++......|.++.+|+.+.|..+ ++-.-..+|.++.+|+.+++.+|..
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 3 55455566777777777777544 5534455677777777777776643
No 411
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=1.4e-10 Score=121.51 Aligned_cols=144 Identities=15% Similarity=0.106 Sum_probs=102.5
Q ss_pred cCeEEeeCC--eEEEEEecc---cCCcccCC-cCcccccccceeeccCcccCCCCC--CCCCCCccce--eeccCCCCCC
Q 041143 59 WPHVFCSGN--RVTQIQVQN---LGLKGPLP-QNFNQLTKLYNLGLQRNKFNGKLP--TFSGLSELEF--AYLDFNEFDT 128 (973)
Q Consensus 59 w~gv~C~~~--~v~~L~L~~---~~l~g~~~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~--L~L~~N~l~~ 128 (973)
|.|+.|+.. +|+.+...+ ..+.+.+. ..+..|.. .|...+|..++.++ .|...+.|+. ++++.|+...
T Consensus 80 ~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~ 157 (267)
T 3rw6_A 80 VNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSC 157 (267)
T ss_dssp TTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHH
T ss_pred cCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHHHH
Confidence 999999754 776665544 33444444 23344443 45666676666554 4777777877 7888886554
Q ss_pred CC---ccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCC--CCCeEEccCCcCc
Q 041143 129 IP---SDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLP--SLAALKLSYNRLS 203 (973)
Q Consensus 129 i~---~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~ 203 (973)
++ .-...++++|+.|+|++|+|+++. .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.
T Consensus 158 ~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 158 MAATLRIIEENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHhhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 33 222357899999999999999742 2567778999999999999999965 3344444 9999999999999
Q ss_pred ccCCh
Q 041143 204 GVIPA 208 (973)
Q Consensus 204 ~~~p~ 208 (973)
+.+|.
T Consensus 234 ~~~~~ 238 (267)
T 3rw6_A 234 DTFRD 238 (267)
T ss_dssp GGCSS
T ss_pred cccCc
Confidence 87774
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=4.4e-09 Score=116.15 Aligned_cols=183 Identities=11% Similarity=0.100 Sum_probs=122.4
Q ss_pred CeEEEEEecccCCc---------ccCCcCcccccccceeeccCcccCCCCCCCCCCCccceeeccCCCCCCCCcccc--C
Q 041143 67 NRVTQIQVQNLGLK---------GPLPQNFNQLTKLYNLGLQRNKFNGKLPTFSGLSELEFAYLDFNEFDTIPSDFF--D 135 (973)
Q Consensus 67 ~~v~~L~L~~~~l~---------g~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~f--~ 135 (973)
.+++.|.+.+.... +.+...+..+++|+.|+|++|.-. .++.+. +++|++|+|..+.+..-....+ .
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 57888888654331 234455678899999999988311 233343 8999999999988764332233 3
Q ss_pred CCCCccEEEccc--CCCCCcc-CCCCCccc--ccccccCeeecccccccCCcchhcc---CCCCCCeEEccCCcCcccCC
Q 041143 136 GLSSVRVLALDY--NPFNKTF-GWSIPDSL--ANSVQLTNLSLINCNLVGPLPDFLG---TLPSLAALKLSYNRLSGVIP 207 (973)
Q Consensus 136 ~l~~L~~L~Ls~--N~l~~~~-~~~ip~~~--~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~p 207 (973)
.+++|+.|+|+. |...+.. ...+...+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|.|.+...
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 789999999964 3222110 00122223 2578999999999999854444443 58899999999999986544
Q ss_pred hhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccC-CCCCCEEeCcCCc
Q 041143 208 ASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGA-LSSLKDLNLNRNQ 274 (973)
Q Consensus 208 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~-l~~L~~L~Ls~N~ 274 (973)
..+.. .+.++++|+.|+|++|.|+...-..+.. + ...++++.|+
T Consensus 297 ~~L~~---------------------~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 297 RLLLD---------------------HVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHT---------------------THHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHh---------------------hcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 43321 1234789999999999998544444443 2 4678999887
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=8e-07 Score=99.59 Aligned_cols=285 Identities=12% Similarity=0.107 Sum_probs=146.4
Q ss_pred eEEEEEecccCCcccCCcCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 68 RVTQIQVQNLGLKGPLPQNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 68 ~v~~L~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
.++++.+. .+++.+-..+|.++++|+.++|..+ ++.+.. +|.++ +|+.+.+. +.++.|...+|.+. +|+.+.+.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~-~~l~~I~~~aF~~~-~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM-ERVKKFGDYVFQGT-DLDDFEFP 121 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC-TTCCEECTTTTTTC-CCSEEECC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC-ceeeEeccceeccC-CcccccCC
Confidence 45555554 2455555566777777777777543 554444 56665 56666665 34666777777664 67777776
Q ss_pred cCCCCCccCCCCCcccccccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhc-----
Q 041143 147 YNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLN----- 221 (973)
Q Consensus 147 ~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~----- 221 (973)
.+... +........+|+.+.+..+ ++......|.++.+|+.+.+..+.........+...........
T Consensus 122 ~~~~~------i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 122 GATTE------IGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp TTCCE------ECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred Ccccc------ccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 54222 2222222235555555443 33344556777778887777665543211111000000000000
Q ss_pred -----ccCCCCCCCcchhhcCCccccEEEccCCccccCCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccC
Q 041143 222 -----DQDAGGMTGPIDVVAKMVSLTQLWLHGNQFTGSIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNN 295 (973)
Q Consensus 222 -----~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~ 295 (973)
............++....+|+.+.+..+ ++......|.++.+|+.+.+..+ ++......|.+. +|+.+.+..
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 0000000111123334444555554433 22122334445555555555433 332333333333 344444432
Q ss_pred CcCcCCCCCCCCCCcccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEe
Q 041143 296 NLLMGPIPKFKAGNVTYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIIN 375 (973)
Q Consensus 296 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 375 (973)
+ +. .++. ..+..+.+|+.+.
T Consensus 273 ~-i~-~i~~----------------------------------------------------------~aF~~c~~L~~i~ 292 (379)
T 4h09_A 273 K-VK-TVPY----------------------------------------------------------LLCSGCSNLTKVV 292 (379)
T ss_dssp C-CS-EECT----------------------------------------------------------TTTTTCTTCCEEE
T ss_pred c-ce-eccc----------------------------------------------------------ccccccccccccc
Confidence 2 11 0000 1244566788888
Q ss_pred cCCCcCCCccchhhhCccccceEEccCCccccccCccccCcCCCCeeeCCCC
Q 041143 376 LPRHNLTGTLSPSIANLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDN 427 (973)
Q Consensus 376 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N 427 (973)
+.++.+...-...|.++.+|+.+.|..+ ++-.-..+|.++.+|+.+.|..|
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8888777777778888888888888654 65444567888888888887654
No 414
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.52 E-value=4.3e-07 Score=99.13 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=100.3
Q ss_pred CccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCC---C-ceeeeeeEEEeCCeEEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRH---R-HLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h---~-niv~l~~~~~~~~~~~lV 701 (973)
.....+.++.|....||+. |+.+++|+.. .......+.+|.++++.+.+ + .+.+++++ +..++|
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~----~~~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lv 105 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPK----RDSVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNI 105 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCC----cHHHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEE
Confidence 5556678999999999998 6678888753 23334568999999999876 1 23444544 566899
Q ss_pred EEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc---------------------------------
Q 041143 702 YEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA--------------------------------- 748 (973)
Q Consensus 702 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~--------------------------------- 748 (973)
|||++|.++..... ..++..++..++.++++.++.||...
T Consensus 106 me~i~G~~l~~~~~-------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (320)
T 3r70_A 106 MKYIKGERITYEQY-------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKE 178 (320)
T ss_dssp EECCCCBCCCHHHH-------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeecCCcccccccc-------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhc
Confidence 99999988864321 23455666777778888888777421
Q ss_pred ---------------------------cCCeeeccCCCCcEEECCCCCEEEeeccccccC
Q 041143 749 ---------------------------RQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLA 781 (973)
Q Consensus 749 ---------------------------~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~ 781 (973)
...++|+|++|.||+++.+..+.|+||+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 179 QLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred ccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 123599999999999998766799999988643
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=1.1e-08 Score=101.97 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=30.9
Q ss_pred cCCCCCccEEEcccC-CCCCccCCCCCcccccccccCeeecccccccC----CcchhccCCCCCCeEEccCCcCc
Q 041143 134 FDGLSSVRVLALDYN-PFNKTFGWSIPDSLANSVQLTNLSLINCNLVG----PLPDFLGTLPSLAALKLSYNRLS 203 (973)
Q Consensus 134 f~~l~~L~~L~Ls~N-~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 203 (973)
+...++|++|+|++| .|.......+...+...++|++|+|++|+|.. .+...+...++|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334444555555554 44422111122333344455555555555542 12233344455555555555554
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=1.4e-08 Score=101.20 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccCC----cchhccCCCCCCeEEc--cCCcCccc
Q 041143 135 DGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVGP----LPDFLGTLPSLAALKL--SYNRLSGV 205 (973)
Q Consensus 135 ~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~ 205 (973)
...++|++|+|++|+|.......+...+...+.|++|+|++|.|... +...+...++|++|+| ++|.|...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 33445555555555554321112333444555666666666666532 3445556666777777 66776643
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.47 E-value=3.7e-07 Score=97.66 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=94.5
Q ss_pred CccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCC---ceeeeeeEEEeCCeEEEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHR---HLVSLLGYSIEGNERLLVY 702 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lV~ 702 (973)
.....+.|+.|.++.||+++..+|+.++||+.... .......|.+|++.|+.+++. .+.+++++. ..++||
T Consensus 16 ~~~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~--~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvm 89 (288)
T 3d1u_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDD--APALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAM 89 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTT--CCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEE
T ss_pred CccceeeeCCcchhheEEEEeCCCCeEEEEecCCC--CcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEE
Confidence 34456789999999999999989999999986432 111234689999999999865 577777763 368999
Q ss_pred EecCCCCHHH-----------HHHhhhhc--cCC--------------CCCHHHHHH---H-----------------HH
Q 041143 703 EYMPHGALSR-----------HLFRWEKL--QLK--------------PLSWTRRLS---I-----------------AL 735 (973)
Q Consensus 703 e~~~~g~L~~-----------~l~~~~~~--~~~--------------~l~~~~~~~---i-----------------~~ 735 (973)
||++++.+.. .||..... +.. .-+|..... + ..
T Consensus 90 e~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~ 169 (288)
T 3d1u_A 90 EWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVR 169 (288)
T ss_dssp ECCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHH
T ss_pred EecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999987531 23332111 000 124443211 0 11
Q ss_pred HHHHHHHHHHh----hccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 736 DVARGMEYLHC----LARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 736 ~ia~gl~~LH~----~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
.+-+.++.+.. .....++|+|+.+.||+++.+ .+.|.|| .+.
T Consensus 170 ~~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~ 215 (288)
T 3d1u_A 170 LVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAH 215 (288)
T ss_dssp HHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCE
T ss_pred HHHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcC
Confidence 11122222321 125679999999999999884 5889999 554
No 418
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.32 E-value=4e-06 Score=89.02 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=96.2
Q ss_pred cccccCcc-EEEEEEEC-CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCCeEEEEEEecCCC
Q 041143 632 ELGRGGFG-TVYKGELE-DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGNERLLVYEYMPHG 708 (973)
Q Consensus 632 ~lG~G~fg-~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV~e~~~~g 708 (973)
.+..|..| .||+.... ++..+.+|+-.. .....+.+|.+.|+.+. +--+.++++++.+.+..++|||+++|.
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~-----~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~ 105 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG-----SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK 105 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET-----HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSE
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC-----CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCc
Confidence 34556555 69988765 456788887643 23457889999999884 333667899999999999999999998
Q ss_pred CHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhc----------------------------------------
Q 041143 709 ALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLA---------------------------------------- 748 (973)
Q Consensus 709 ~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~---------------------------------------- 748 (973)
++.+.... .......++.++++.|..||...
T Consensus 106 ~~~~~~~~---------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (272)
T 4gkh_A 106 TAFQVLEE---------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPV 176 (272)
T ss_dssp EHHHHHHH---------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCH
T ss_pred cccccccC---------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHH
Confidence 88765432 11223446666667777776410
Q ss_pred ---------------cCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 749 ---------------RQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 749 ---------------~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
...++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 177 ~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 177 EQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1137899999999999988777899998765
No 419
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=8.2e-08 Score=100.41 Aligned_cols=104 Identities=17% Similarity=0.190 Sum_probs=80.2
Q ss_pred cccccccce--eeccCcccCCC---CC-CCCCCCccceeeccCCCCCCCCc--cccCCCCCccEEEcccCCCCCccCCCC
Q 041143 87 FNQLTKLYN--LGLQRNKFNGK---LP-TFSGLSELEFAYLDFNEFDTIPS--DFFDGLSSVRVLALDYNPFNKTFGWSI 158 (973)
Q Consensus 87 ~~~l~~L~~--L~L~~N~l~~~---~~-~~~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~~~~~~i 158 (973)
|...+.|+. ++++.|..... ++ ...++++|+.|+|++|+|+.++. ..+..+++|+.|+|++|+|++.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~----- 211 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE----- 211 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-----
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-----
Confidence 666667776 77888854332 22 22568899999999999998764 5677899999999999999974
Q ss_pred Cccccccc--ccCeeecccccccCCcc-------hhccCCCCCCeEE
Q 041143 159 PDSLANSV--QLTNLSLINCNLVGPLP-------DFLGTLPSLAALK 196 (973)
Q Consensus 159 p~~~~~l~--~L~~L~L~~N~l~~~~p-------~~l~~l~~L~~L~ 196 (973)
..+..+. +|++|+|++|.+.+.+| ..+..+++|+.||
T Consensus 212 -~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 212 -RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3445555 99999999999997665 3478899999887
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.27 E-value=5.5e-06 Score=89.60 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=91.8
Q ss_pred cCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCC---ceeeeeeEEE-eCCeEEEEEEec
Q 041143 630 ENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHR---HLVSLLGYSI-EGNERLLVYEYM 705 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lV~e~~ 705 (973)
.+.++.|....||+. |..++||+-. .......+.+|.++|+.+.+. .+.+++.++. ..+..++||||+
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~----~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i 95 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK----SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKV 95 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES----SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC----CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEecc
Confidence 345788888899998 5678888742 334556889999999999753 3556666664 345678999999
Q ss_pred CCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhh--------------------------------------
Q 041143 706 PHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCL-------------------------------------- 747 (973)
Q Consensus 706 ~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~-------------------------------------- 747 (973)
+|..+..... ..++..++..++.++++.|+.||..
T Consensus 96 ~G~~l~~~~~-------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~ 168 (306)
T 3tdw_A 96 QGQILGEDGM-------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESL 168 (306)
T ss_dssp CSEECHHHHH-------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred CCeECchhhh-------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhh
Confidence 9988865321 1123333444444444444444421
Q ss_pred -------------------ccCCeeeccCCCCcEEECC---CCC-EEEeecccccc
Q 041143 748 -------------------ARQTFIHRDLKSSNILLDD---DYR-AKVSDFGLVKL 780 (973)
Q Consensus 748 -------------------~~~~ivH~Dikp~Nill~~---~~~-~kl~DfGla~~ 780 (973)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 169 ~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 169 RDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1345799999999999997 455 48999997763
No 421
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.24 E-value=5e-06 Score=92.05 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=91.1
Q ss_pred CccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCc--eeeeeeEEEeC-CeEEEEE
Q 041143 626 NFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRH--LVSLLGYSIEG-NERLLVY 702 (973)
Q Consensus 626 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lV~ 702 (973)
.....+.++.|....+|+.+. +|+.+++|+.... ..+.+|..+++.+.... +.++++++... +..++||
T Consensus 42 ~~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~ 113 (362)
T 3ovc_A 42 SVSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCIS 113 (362)
T ss_dssp CCEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEE
T ss_pred CCceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEE
Confidence 344556788999999999876 4788999976432 25788999999986433 45677776654 5689999
Q ss_pred EecCCCCHHH---------------H---HHhhhhcc--------C----CCCCHHHHH---------------------
Q 041143 703 EYMPHGALSR---------------H---LFRWEKLQ--------L----KPLSWTRRL--------------------- 731 (973)
Q Consensus 703 e~~~~g~L~~---------------~---l~~~~~~~--------~----~~l~~~~~~--------------------- 731 (973)
||++|..+.+ . ||...... . ..-+|...+
T Consensus 114 e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (362)
T 3ovc_A 114 RRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSA 193 (362)
T ss_dssp ECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHH
T ss_pred EecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9998765531 1 12211000 0 000121110
Q ss_pred HHHHHHHHHHHHHHhh-ccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 732 SIALDVARGMEYLHCL-ARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 732 ~i~~~ia~gl~~LH~~-~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
.....+..-++++... ....++|+|+++.||++++++.+.|+||+.+..
T Consensus 194 ~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 194 SVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred cchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1111122222233211 125689999999999998877788999998764
No 422
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=9.2e-05 Score=82.65 Aligned_cols=267 Identities=9% Similarity=0.108 Sum_probs=144.9
Q ss_pred cCcccccccceeeccCcccCCCCC-CCCCCCccceeeccCCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccc
Q 041143 85 QNFNQLTKLYNLGLQRNKFNGKLP-TFSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLA 163 (973)
Q Consensus 85 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~ 163 (973)
+.+....+|+.+.+.. .++.+.. +|.++.+|+.+.|.. .++.|...+|.+. +|+.+.+..+ ++. +.....
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~-----I~~~aF 110 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKK-----FGDYVF 110 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCE-----ECTTTT
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeE-----ecccee
Confidence 4466677888888864 4665555 799999999999974 4888888999887 6777777654 442 343333
Q ss_pred cccccCeeecccccccCCcchhccCCCCCCeEEccCCcCcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCCccccE
Q 041143 164 NSVQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKMVSLTQ 243 (973)
Q Consensus 164 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 243 (973)
...+|+.+.+.++ ++......|.+. +|+.+.+..+ ++..... +|.++.+|+.
T Consensus 111 ~~~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~-------------------------~f~~~~~l~~ 162 (379)
T 4h09_A 111 QGTDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDG-------------------------IGYKAENLEK 162 (379)
T ss_dssp TTCCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSC-------------------------TTTTCTTCCE
T ss_pred ccCCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccc-------------------------hhcccccccc
Confidence 3457888888765 332334455544 5666655443 2212222 2334555555
Q ss_pred EEccCCcccc------------CCCccccCCCCCCEEeCcCCcccccCccccccc-ccCeEEccCCcCcCCCCCCCCCCc
Q 041143 244 LWLHGNQFTG------------SIPEDIGALSSLKDLNLNRNQLVGLIPKSLANM-ELDNLVLNNNLLMGPIPKFKAGNV 310 (973)
Q Consensus 244 L~L~~N~l~g------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~L~~L~l~~N~l~g~~p~~~~~~~ 310 (973)
+.+..+.... .....+.....+..+.+..+.-. .....+... .|+.+.+..+.-. ++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~~~--i~~~----- 234 (379)
T 4h09_A 163 IEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGVTT--LGDG----- 234 (379)
T ss_dssp EEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTCCE--ECTT-----
T ss_pred cccccccceeecccceecccccceeccccccccccccccccceeE-EeecccccccccceeeeccceeE--Eccc-----
Confidence 5554433210 11122333334444443322211 112222222 3444444332110 0000
Q ss_pred ccccCcccCCCCCcccCCcchhhhhhccCCCCCCcccCCCCCCCCCCCCccccccCCCCcccEEecCCCcCCCccchhhh
Q 041143 311 TYDSNSFCQSEPGIECAPDVNVLLDFLGGVNYPVNLVSQWPGNDPCQGPWLGLSCTSNSKVSIINLPRHNLTGTLSPSIA 390 (973)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~ 390 (973)
.|.+ ...+..+.++.+ +..+.. ..+....+|+.+.+..+ +.......|.
T Consensus 235 -----~f~~--------------~~~L~~i~lp~~-v~~I~~----------~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 235 -----AFYG--------------MKALDEIAIPKN-VTSIGS----------FLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp -----TTTT--------------CSSCCEEEECTT-CCEECT----------TTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred -----cccC--------------CccceEEEcCCC-ccEeCc----------cccceeehhcccccccc-ceeccccccc
Confidence 0000 000111111111 111110 12345567888888654 5555566789
Q ss_pred CccccceEEccCCccccccCccccCcCCCCeeeCCCC
Q 041143 391 NLDSLIEIRLGKNSISGTVPNNFTELKSLRLLDVSDN 427 (973)
Q Consensus 391 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~Ls~N 427 (973)
++.+|+.+.+.+|.++-.-...|.++.+|+.++|..|
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999999999999888666788999999999999754
No 423
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.91 E-value=9.9e-05 Score=81.08 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=81.2
Q ss_pred CcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-----CCceeeee-e--EEEeCCeEEEEE
Q 041143 631 NELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-----HRHLVSLL-G--YSIEGNERLLVY 702 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lV~ 702 (973)
+.|+.|..+.||+....+| .+++|+.... . ..+..|.++++.+. .|.++... | +....+..++||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~---~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~ 110 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP---E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVY 110 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC---H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC---H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEE
Confidence 4466677899999987655 5889987642 2 23344555555542 24433311 1 223466789999
Q ss_pred EecCCCCHH--------------HHHHhhhhcc--C-------CCCCHHHHH----------------------------
Q 041143 703 EYMPHGALS--------------RHLFRWEKLQ--L-------KPLSWTRRL---------------------------- 731 (973)
Q Consensus 703 e~~~~g~L~--------------~~l~~~~~~~--~-------~~l~~~~~~---------------------------- 731 (973)
||++|..+. ..+|.....- . ..-.|....
T Consensus 111 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 190 (346)
T 2q83_A 111 DWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQ 190 (346)
T ss_dssp ECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred EeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 999986542 1223211100 0 012343211
Q ss_pred ---HHHHHHHHHHHHHHh----------hccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 732 ---SIALDVARGMEYLHC----------LARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 732 ---~i~~~ia~gl~~LH~----------~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
.+...+.+++++|+. .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 191 EIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 011223445666653 125789999999999999888899999998764
No 424
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.86 E-value=1.1e-05 Score=89.40 Aligned_cols=82 Identities=10% Similarity=0.048 Sum_probs=54.4
Q ss_pred cCcc-cccCccEEEEEEEC-------CCCEEEEEEeecCCC-ChHHHHHHHHHHHHHHhcC-C--CceeeeeeEEEeC--
Q 041143 630 ENEL-GRGGFGTVYKGELE-------DGTKIAVKRMEAGVT-TTKALDEFQSEIAVLSKVR-H--RHLVSLLGYSIEG-- 695 (973)
Q Consensus 630 ~~~l-G~G~fg~Vy~~~~~-------~g~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 695 (973)
.+.| +.|....+|+.... +++.+++|+-..... .......+.+|+++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998764 266788887543210 0001135678888888884 3 3466788877655
Q ss_pred -CeEEEEEEecCCCCHH
Q 041143 696 -NERLLVYEYMPHGALS 711 (973)
Q Consensus 696 -~~~~lV~e~~~~g~L~ 711 (973)
+..++||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 3568999999886543
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.82 E-value=5.6e-05 Score=85.00 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=49.8
Q ss_pred cCcccccCccEEEEEEEC-CCCEEEEEEeecCCC--Ch---HHHHHHHHHHHHHHhcCC--Ccee-eeeeEEEeCCeEEE
Q 041143 630 ENELGRGGFGTVYKGELE-DGTKIAVKRMEAGVT--TT---KALDEFQSEIAVLSKVRH--RHLV-SLLGYSIEGNERLL 700 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~-~g~~vavK~~~~~~~--~~---~~~~~~~~E~~~l~~l~h--~niv-~l~~~~~~~~~~~l 700 (973)
.+.||.|.++.||++... +++.++||....... .. ...+++..|.++++.+.. +..+ +++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999764 468899998653211 00 112456789999888742 4444 55543 4455689
Q ss_pred EEEecCCC
Q 041143 701 VYEYMPHG 708 (973)
Q Consensus 701 V~e~~~~g 708 (973)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 426
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.71 E-value=5.7e-05 Score=85.61 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=49.1
Q ss_pred cCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCCcceeccccc--ccCcccccccccCc---CCCchhHHhHHHHHH
Q 041143 749 RQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAG--TFGYLAPEYAVMGK---ITTKADVFSYGVVLM 823 (973)
Q Consensus 749 ~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~~---~~~~~Dv~S~Gvvl~ 823 (973)
...++|+|+++.||+++.++ ++|+||+.+......... ....+ ...|.+|+...... -....++......+|
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dl--a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDI--GAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHH--HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHH--HHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 67899999999999999876 999999988754321110 01111 23466766553211 112345667888888
Q ss_pred HHHhC
Q 041143 824 ELLTG 828 (973)
Q Consensus 824 elltg 828 (973)
+.+.+
T Consensus 308 ~~y~~ 312 (420)
T 2pyw_A 308 NLFNK 312 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88775
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.61 E-value=1.1e-05 Score=79.72 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCCCccEEEcccC-CCCCccCCCCCcccccccccCeeecccccccC----CcchhccCCCCCCeEEccCCcCcc
Q 041143 136 GLSSVRVLALDYN-PFNKTFGWSIPDSLANSVQLTNLSLINCNLVG----PLPDFLGTLPSLAALKLSYNRLSG 204 (973)
Q Consensus 136 ~l~~L~~L~Ls~N-~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (973)
+-+.|++|+|++| +|.......+...+...+.|+.|+|++|+|.. .+...+..-+.|++|+|++|.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3344555555543 44321111233344445556666666666552 233344455566666666666653
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=1.5e-05 Score=78.57 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred cCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeecccccccC----CcchhccCCCCCCeEEccCCc
Q 041143 134 FDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCNLVG----PLPDFLGTLPSLAALKLSYNR 201 (973)
Q Consensus 134 f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~ 201 (973)
+..-..|+.|+|++|+|.......+...+...+.|+.|+|++|.|.. .+...+..-+.|++|+|++|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 44455666666666666544333455566666777777777777763 233455566678888887653
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.48 E-value=0.0013 Score=70.65 Aligned_cols=141 Identities=17% Similarity=0.194 Sum_probs=93.1
Q ss_pred ccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC---CCceeeeeeEEEeCCeEEEEEEec
Q 041143 629 QENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR---HRHLVSLLGYSIEGNERLLVYEYM 705 (973)
Q Consensus 629 ~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lV~e~~ 705 (973)
..+.|+.|.+..+|+.... +..++||+.... ....+.+|.+.|+.+. ...+.++++++...+..++||||+
T Consensus 40 ~~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~-----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLINDE-VQTVFVKINERS-----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEEEECCSSSSEEEEEESS-SCEEEEEEEEGG-----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred eeEEeCCccceeeeEEEEC-CCeEEEEeCCcc-----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 3467899999999999864 678889986532 2457889999998884 356788898888888899999999
Q ss_pred CCCCHH--------H---HHHhhhh---ccC--------------CCCCHHHHH---HHHH--H--------------HH
Q 041143 706 PHGALS--------R---HLFRWEK---LQL--------------KPLSWTRRL---SIAL--D--------------VA 738 (973)
Q Consensus 706 ~~g~L~--------~---~l~~~~~---~~~--------------~~l~~~~~~---~i~~--~--------------ia 738 (973)
++..+. + .||.... .+. -.-+|.... ++.. + ++
T Consensus 114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~ 193 (312)
T 3jr1_A 114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV 193 (312)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 987652 1 2333211 000 012565332 1111 1 11
Q ss_pred HH-HHHHHh-hccCCeeeccCCCCcEEECCCCCEEEeecc
Q 041143 739 RG-MEYLHC-LARQTFIHRDLKSSNILLDDDYRAKVSDFG 776 (973)
Q Consensus 739 ~g-l~~LH~-~~~~~ivH~Dikp~Nill~~~~~~kl~DfG 776 (973)
.. ...|.. ...+.++|+|+.+.|++++.++ +.|.||.
T Consensus 194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 11 123321 1256799999999999999887 8899974
No 430
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.42 E-value=7.7e-05 Score=72.13 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=59.0
Q ss_pred ccceeeccCCCCCCCCccccCCCCCccEEEcccCC-CCCccCCCCCcccccc----cccCeeeccccc-ccCCcchhccC
Q 041143 115 ELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNP-FNKTFGWSIPDSLANS----VQLTNLSLINCN-LVGPLPDFLGT 188 (973)
Q Consensus 115 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~~~~~~ip~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~ 188 (973)
+|+.|||+++.|+...-..+.++++|+.|+|++|. |+.. --..++.+ ++|++|+|++|. |+..--..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 56666666666665555556778888888888874 5542 11233432 469999999984 87655556788
Q ss_pred CCCCCeEEccCCc-Cc
Q 041143 189 LPSLAALKLSYNR-LS 203 (973)
Q Consensus 189 l~~L~~L~Ls~N~-l~ 203 (973)
+++|++|+|+++. ++
T Consensus 138 ~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CTTCCEEEEESCTTCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 9999999999986 44
No 431
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.36 E-value=0.00038 Score=74.28 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=56.8
Q ss_pred cCccccCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCC---ceeeeeeEEEeCCeEEEE
Q 041143 625 QNFAQENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHR---HLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 625 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lV 701 (973)
......+.+|.|..+.||+.+..||+.|.||+-..... .....|.+|.+.|+.+.-. -+.+++++ + ..++|
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~--~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv 88 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAP--ALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLA 88 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCC--CCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCc--chhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEE
Confidence 34556678999999999999999999999998654321 1123578899999988421 23445543 2 24799
Q ss_pred EEecCCCCH
Q 041143 702 YEYMPHGAL 710 (973)
Q Consensus 702 ~e~~~~g~L 710 (973)
|||++++..
T Consensus 89 ~e~l~~~~~ 97 (288)
T 3f7w_A 89 MEWVDERPP 97 (288)
T ss_dssp EECCCCCCC
T ss_pred EEeecccCC
Confidence 999987654
No 432
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.30 E-value=0.0001 Score=71.22 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=51.6
Q ss_pred cccCeeecccccccCCcchhccCCCCCCeEEccCCc-CcccCChhhhhhHHHHHhhcccCCCCCCCcchhhcCC----cc
Q 041143 166 VQLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNR-LSGVIPASFGQSLMQILWLNDQDAGGMTGPIDVVAKM----VS 240 (973)
Q Consensus 166 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l----~~ 240 (973)
-+|+.|||+++.|+..--..+.++++|++|+|++|. ++..-=. .++.+ ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-------------------------~L~~~~~~~~~ 115 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-------------------------RLSQLENLQKS 115 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-------------------------HHHTCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-------------------------HHHhcccccCC
Confidence 356777777776665444556677777777777774 5421111 12222 46
Q ss_pred ccEEEccCCc-cccCCCccccCCCCCCEEeCcCCc
Q 041143 241 LTQLWLHGNQ-FTGSIPEDIGALSSLKDLNLNRNQ 274 (973)
Q Consensus 241 L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~Ls~N~ 274 (973)
|++|+|++|. ||..--..+.++++|++|+|+++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 7788887763 664444456677778888877764
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.27 E-value=0.0012 Score=71.69 Aligned_cols=160 Identities=12% Similarity=0.149 Sum_probs=89.8
Q ss_pred ecHHHHHHHhcCccc-----cCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCc--eee
Q 041143 615 ISVQVLRKVTQNFAQ-----ENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRH--LVS 687 (973)
Q Consensus 615 ~~~~~~~~~~~~~~~-----~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 687 (973)
++.+++......|.. .+.|+.|....+|+....+| .+++|+.... ...+.+..|+++++.+.... +.+
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~----~~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR----VEKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-------CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC----CCHHHHHHHHHHHHHHHHCCCCCCc
Confidence 445666666666754 23466788889999987766 5788887542 11234566888877764212 233
Q ss_pred eeeE------EEeCCeEEEEEEecCCCCHHH--------------HHHhhhh-ccCC------CCCHHHHHH--------
Q 041143 688 LLGY------SIEGNERLLVYEYMPHGALSR--------------HLFRWEK-LQLK------PLSWTRRLS-------- 732 (973)
Q Consensus 688 l~~~------~~~~~~~~lV~e~~~~g~L~~--------------~l~~~~~-~~~~------~l~~~~~~~-------- 732 (973)
++.. ....+..++||||++|..+.. .+|.... .... ...|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 3321 123456789999998854311 1222110 0000 012332111
Q ss_pred ----HHHHHHHHHHHHHhh----ccCCeeeccCCCCcEEECCCCCEEEeeccccc
Q 041143 733 ----IALDVARGMEYLHCL----ARQTFIHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 733 ----i~~~ia~gl~~LH~~----~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+...+.+.+++++.. ....++|+|+++.||+++.+..+.|+||+.+.
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 111244456666532 13579999999999999987666899998664
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.19 E-value=0.0012 Score=71.90 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=74.7
Q ss_pred CcccccCccE-EEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-C-CceeeeeeEEEeCCeEEEEEEecCC
Q 041143 631 NELGRGGFGT-VYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-H-RHLVSLLGYSIEGNERLLVYEYMPH 707 (973)
Q Consensus 631 ~~lG~G~fg~-Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h-~niv~l~~~~~~~~~~~lV~e~~~~ 707 (973)
+.|+.|+... +|+....+|..+++|...... .+.+..|+++++.+. + -.+.+++.+..+.+ ++|||++.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~-----~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~ 96 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE-----GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGD 96 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT-----TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCS
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC-----CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCC
Confidence 4565565554 667766446777777643321 023456777777664 2 23455666643333 789999977
Q ss_pred CCHHHHHHhhhh------------------c---cCCCCCHHHHH--------------------HHHHHHHHHHHHHHh
Q 041143 708 GALSRHLFRWEK------------------L---QLKPLSWTRRL--------------------SIALDVARGMEYLHC 746 (973)
Q Consensus 708 g~L~~~l~~~~~------------------~---~~~~l~~~~~~--------------------~i~~~ia~gl~~LH~ 746 (973)
..+.+++..... . ....++..... .....+.+.++.+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 176 (333)
T 3csv_A 97 ALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILS 176 (333)
T ss_dssp CBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 777655432100 0 00111111000 000111122233311
Q ss_pred ---hccCCeeeccCCCCcEEECCC----CCEEEeeccccccC
Q 041143 747 ---LARQTFIHRDLKSSNILLDDD----YRAKVSDFGLVKLA 781 (973)
Q Consensus 747 ---~~~~~ivH~Dikp~Nill~~~----~~~kl~DfGla~~~ 781 (973)
.....++|+|+.+.||+++.+ +.+.|+||+.+...
T Consensus 177 ~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 177 AQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred hcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 124579999999999999875 67999999987643
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.10 E-value=0.0065 Score=65.92 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=88.8
Q ss_pred cHHHHHHHhcCccc-----cCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCC--ceeee
Q 041143 616 SVQVLRKVTQNFAQ-----ENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHR--HLVSL 688 (973)
Q Consensus 616 ~~~~~~~~~~~~~~-----~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l 688 (973)
+.+.+..+.+.|.. ...++ |....||+....+|+.+++|+....... .+.+..|..+++.+... .+.++
T Consensus 12 ~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~---~~~~~~E~~~~~~L~~~g~~vp~~ 87 (328)
T 1zyl_A 12 HPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPERWT---ADQILEEHQFALQLVNDEVPVAAP 87 (328)
T ss_dssp CHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTTSC---HHHHHHHHHHHHHHHHTTCSBCCC
T ss_pred CHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCCCC---HHHHHHHHHHHHHHHHcCCeecce
Confidence 33444444444432 23466 8888999988777878999988643222 24566788888877422 23444
Q ss_pred eeE-----EEeCCeEEEEEEecCCCCHH-----H---------HHHhhhhc----cCCCCCHHHH----HHH--------
Q 041143 689 LGY-----SIEGNERLLVYEYMPHGALS-----R---------HLFRWEKL----QLKPLSWTRR----LSI-------- 733 (973)
Q Consensus 689 ~~~-----~~~~~~~~lV~e~~~~g~L~-----~---------~l~~~~~~----~~~~l~~~~~----~~i-------- 733 (973)
+.. ....+..++||||++|..+. . .+|..... .....++... ..+
T Consensus 88 ~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (328)
T 1zyl_A 88 VAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIP 167 (328)
T ss_dssp CCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSC
T ss_pred eecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCC
Confidence 442 22345668899999875432 1 12221110 0011222211 000
Q ss_pred -------HHHHHHHHHHHHhh----ccCCeeeccCCCCcEEECCCCCEEEeecccccc
Q 041143 734 -------ALDVARGMEYLHCL----ARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKL 780 (973)
Q Consensus 734 -------~~~ia~gl~~LH~~----~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~ 780 (973)
...+.+.++.+... ....++|+|+++.||+++ + .+.|+||+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 168 SGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 11111223333221 245689999999999999 4 899999987653
No 436
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.99 E-value=0.0012 Score=70.74 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=44.1
Q ss_pred cCcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCce-eeeeeEEEeCCeEEEEEEec-CC
Q 041143 630 ENELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHL-VSLLGYSIEGNERLLVYEYM-PH 707 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~-~~ 707 (973)
.+.|+.|....+|+. +.+++|+-.... .......+|+.+++.+....+ .+++++ +.+.-++|+||+ ++
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~---~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGT---EEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGA 92 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-------CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTC
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCc---cceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCC
Confidence 567888999999998 458888765321 111123568888877743233 355544 344457899999 65
Q ss_pred CCH
Q 041143 708 GAL 710 (973)
Q Consensus 708 g~L 710 (973)
.++
T Consensus 93 ~~l 95 (301)
T 3dxq_A 93 QTM 95 (301)
T ss_dssp EEC
T ss_pred ccC
Confidence 444
No 437
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.00092 Score=61.55 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=31.7
Q ss_pred ccceeeccCCCCCCCCccccCCCCCccEEEcccCCCC
Q 041143 115 ELEFAYLDFNEFDTIPSDFFDGLSSVRVLALDYNPFN 151 (973)
Q Consensus 115 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 151 (973)
+|++|+|++|+|+.|+.++|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5788888888888888888888999999999998775
No 438
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.61 E-value=0.0059 Score=67.33 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=80.7
Q ss_pred CcccccCccEEEEEEEC--------CCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCCeEEEE
Q 041143 631 NELGRGGFGTVYKGELE--------DGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGNERLLV 701 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lV 701 (973)
+.|..|-...+|++... +++.+.+|+-... ......+.+|.++++.+. +.-..++++++.+ .+|
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~---~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v 128 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI---LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRL 128 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC------CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc---cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccE
Confidence 45666888889999875 2478888875221 112345668999998884 3333566666543 299
Q ss_pred EEecCCCCHHH--------------H---HHhhhhccCCCCC--HHHHHHHHHHHH-------------------HHHHH
Q 041143 702 YEYMPHGALSR--------------H---LFRWEKLQLKPLS--WTRRLSIALDVA-------------------RGMEY 743 (973)
Q Consensus 702 ~e~~~~g~L~~--------------~---l~~~~~~~~~~l~--~~~~~~i~~~ia-------------------~gl~~ 743 (973)
|||++|..|.. . ||.....-.+... |.+..++..++. +.+..
T Consensus 129 ~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (379)
T 3feg_A 129 EQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGN 208 (379)
T ss_dssp EECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHH
T ss_pred EEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHH
Confidence 99998855421 1 1211110011222 344444443332 12333
Q ss_pred HHhh-----ccCCeeeccCCCCcEEECCC----CCEEEeeccccc
Q 041143 744 LHCL-----ARQTFIHRDLKSSNILLDDD----YRAKVSDFGLVK 779 (973)
Q Consensus 744 LH~~-----~~~~ivH~Dikp~Nill~~~----~~~kl~DfGla~ 779 (973)
|... ....++|+|+.+.||+++.+ +.+.|+||..+.
T Consensus 209 L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 209 LRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 3321 13468999999999999876 789999998765
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0028 Score=58.28 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=31.8
Q ss_pred ccCeeecccccccCCcchhccCCCCCCeEEccCCcCcc
Q 041143 167 QLTNLSLINCNLVGPLPDFLGTLPSLAALKLSYNRLSG 204 (973)
Q Consensus 167 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 204 (973)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 57888888888887777788889999999999998863
No 440
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.39 E-value=0.014 Score=65.72 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=48.9
Q ss_pred cCcccccCccEEEEEEECC--------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCce-eeeeeEEEeCCeEEE
Q 041143 630 ENELGRGGFGTVYKGELED--------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHL-VSLLGYSIEGNERLL 700 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~l 700 (973)
.+.|+.|....||++...+ ++.+.+|+.... .. .+.+.+|..+++.+...++ .++++.+.+ .+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~ 149 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GR 149 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-Cc---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CE
Confidence 4567888889999998753 578888887431 11 1345579999888853333 566665432 38
Q ss_pred EEEecCCCCH
Q 041143 701 VYEYMPHGAL 710 (973)
Q Consensus 701 V~e~~~~g~L 710 (973)
||||++|.++
T Consensus 150 v~e~l~G~~l 159 (429)
T 1nw1_A 150 LEEYIPSRPL 159 (429)
T ss_dssp EECCCCEEEC
T ss_pred EEEEeCCccc
Confidence 9999986343
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.35 E-value=0.0042 Score=68.74 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=43.4
Q ss_pred CcccccCccEEEEEEECC---------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCc-eeeeeeEEEeCCeEEE
Q 041143 631 NELGRGGFGTVYKGELED---------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRH-LVSLLGYSIEGNERLL 700 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~l 700 (973)
+.|+.|..-.+|+....+ ++.+++|+.... .........|.++++.+.... ..++++.. . -++
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~---~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~ 111 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKH---VDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGR 111 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTT---GGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCC---ccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcE
Confidence 457778888999998764 267888876432 111112367888888875333 33666543 2 268
Q ss_pred EEEecCCCCH
Q 041143 701 VYEYMPHGAL 710 (973)
Q Consensus 701 V~e~~~~g~L 710 (973)
||||++|..+
T Consensus 112 v~e~i~G~~l 121 (369)
T 3c5i_A 112 IEEWLYGDPL 121 (369)
T ss_dssp EEECCCSEEC
T ss_pred EEEEecCCcC
Confidence 9999987543
No 442
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.26 E-value=0.014 Score=66.13 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=47.1
Q ss_pred cCcccccCccEEEEEEECC-CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCce-eeeeeEEEeCCeEEEEEEecCC
Q 041143 630 ENELGRGGFGTVYKGELED-GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHL-VSLLGYSIEGNERLLVYEYMPH 707 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lV~e~~~~ 707 (973)
.+.|+.|-...+|++...+ +..+.+|+....... .-...+|..+++.+...++ .++++++. + .+||||++|
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~---~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G 185 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE---IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDG 185 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS---CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCS
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh---hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCC
Confidence 3567888889999998875 477888876432111 0112579999999865445 46676652 2 259999987
Q ss_pred CCH
Q 041143 708 GAL 710 (973)
Q Consensus 708 g~L 710 (973)
..|
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 444
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.03 E-value=0.057 Score=58.70 Aligned_cols=67 Identities=6% Similarity=0.089 Sum_probs=43.4
Q ss_pred ccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC---CCceeeeeeE------EEeCCeEEEEEEec
Q 041143 635 RGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR---HRHLVSLLGY------SIEGNERLLVYEYM 705 (973)
Q Consensus 635 ~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lV~e~~ 705 (973)
.|....||+....+| .+++|+...... ..|+++++.+. -+.+.+.+.. ....+..++||||+
T Consensus 33 ~g~~N~vy~v~~~~g-~~vLK~~~~~~~--------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i 103 (339)
T 3i1a_A 33 ADTNAFAYQADSESK-SYFIKLKYGYHD--------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFI 103 (339)
T ss_dssp SCSSCEEEEEECSSC-EEEEEEEECSSC--------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECC
T ss_pred CccccceEEEEeCCC-CEEEEEecCccc--------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEecc
Confidence 333679999988777 899998765421 34666666552 2224444432 23356779999999
Q ss_pred CCCCH
Q 041143 706 PHGAL 710 (973)
Q Consensus 706 ~~g~L 710 (973)
+|..+
T Consensus 104 ~G~~~ 108 (339)
T 3i1a_A 104 HAPNG 108 (339)
T ss_dssp CCCBT
T ss_pred CCCcC
Confidence 98765
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.65 E-value=0.027 Score=62.25 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=79.7
Q ss_pred CcccccCccEEEEEEECC--------CCEEEEEEeecCCCC---------hH-------HHHHHHHHHHHHHhcC-CCce
Q 041143 631 NELGRGGFGTVYKGELED--------GTKIAVKRMEAGVTT---------TK-------ALDEFQSEIAVLSKVR-HRHL 685 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~~--------g~~vavK~~~~~~~~---------~~-------~~~~~~~E~~~l~~l~-h~ni 685 (973)
+.|..|-...+|++...+ +..|.+++.-..... .. ..+....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 446567778899988754 367777765332100 00 0112335888888885 4445
Q ss_pred eeeeeEEEeCCeEEEEEEecCCCCHHH--------------HHHhhhhc---cCCCCC--HHHHHHHHHHHH--------
Q 041143 686 VSLLGYSIEGNERLLVYEYMPHGALSR--------------HLFRWEKL---QLKPLS--WTRRLSIALDVA-------- 738 (973)
Q Consensus 686 v~l~~~~~~~~~~~lV~e~~~~g~L~~--------------~l~~~~~~---~~~~l~--~~~~~~i~~~ia-------- 738 (973)
.++++++..+ +|+||+++-+|.. .|.+.... -.+... |.+..++..++.
T Consensus 138 Pkl~~~~~~G----~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQG----RLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETTE----EEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCCC----eEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 5677665432 8999998744421 11111111 011122 223333332221
Q ss_pred --------------HHHHH----HHhh-ccCCeeeccCCCCcEEECCC------CCEEEeeccccc
Q 041143 739 --------------RGMEY----LHCL-ARQTFIHRDLKSSNILLDDD------YRAKVSDFGLVK 779 (973)
Q Consensus 739 --------------~gl~~----LH~~-~~~~ivH~Dikp~Nill~~~------~~~kl~DfGla~ 779 (973)
.-+.. |... ....++|+|+.+.||+++.+ +.+.|+||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 11222 2211 13468899999999999876 789999998764
No 445
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.46 E-value=0.15 Score=50.45 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCCcEEECCCCCEEEeeccccccCCCCCc
Q 041143 707 HGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSSNILLDDDYRAKVSDFGLVKLAPDGEK 786 (973)
Q Consensus 707 ~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~Nill~~~~~~kl~DfGla~~~~~~~~ 786 (973)
.-+|.+.|..+ ..++++.+++.++.|.+++|.-+-. +..-..+=+-|..|++..+|.|.+.+ +.+.
T Consensus 32 ~vSL~eIL~~~----~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------- 97 (229)
T 2yle_A 32 ALSLEEILRLY----NQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------- 97 (229)
T ss_dssp EEEHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C----------
T ss_pred cccHHHHHHHc----CCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc-------
Confidence 34799999763 3789999999999999999877621 11111333457899999999988764 1111
Q ss_pred ceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCC
Q 041143 787 SVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAA 831 (973)
Q Consensus 787 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p 831 (973)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 ------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 ------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ---------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0123466888653 3456788999999999998864333
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.04 E-value=0.13 Score=57.50 Aligned_cols=74 Identities=8% Similarity=0.064 Sum_probs=47.1
Q ss_pred cCcccccCccEEEEEEECC--------CCEEEEEEeecCCCChHHHHHHHHHHHHHHhcC-CCceeeeeeEEEeCCeEEE
Q 041143 630 ENELGRGGFGTVYKGELED--------GTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVR-HRHLVSLLGYSIEGNERLL 700 (973)
Q Consensus 630 ~~~lG~G~fg~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 700 (973)
.+.+..|-...+|+....+ ++.+.+|+.... . ...-+..+|.++++.+. +.-..++++.+ . -++
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~--t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~--~--~~~ 147 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH--V-GKFYDSKVELDVFRYLSNINIAPNIIADF--P--EGR 147 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC--C--CCCCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC--c-chhcCHHHHHHHHHHHHhcCCCCCEEEEc--C--CCE
Confidence 3567778888999998763 578888875332 1 11112357888888874 32234555433 2 278
Q ss_pred EEEecCCCCH
Q 041143 701 VYEYMPHGAL 710 (973)
Q Consensus 701 V~e~~~~g~L 710 (973)
||||++|..|
T Consensus 148 I~efI~G~~l 157 (424)
T 3mes_A 148 IEEFIDGEPL 157 (424)
T ss_dssp EEECCCSEEC
T ss_pred EEEEeCCccC
Confidence 9999998653
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=87.77 E-value=1.6 Score=48.28 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.1
Q ss_pred eeeccCCCCcEEE------CCCCCEEEeeccccc
Q 041143 752 FIHRDLKSSNILL------DDDYRAKVSDFGLVK 779 (973)
Q Consensus 752 ivH~Dikp~Nill------~~~~~~kl~DfGla~ 779 (973)
++|+|+.+.||++ +++..++++||.+|.
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 5799999999999 456789999998775
No 448
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=86.29 E-value=0.1 Score=59.17 Aligned_cols=63 Identities=6% Similarity=0.096 Sum_probs=18.3
Q ss_pred ccCcccccCccEEEEEEECC-CCEEEE------EEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEEEe
Q 041143 629 QENELGRGGFGTVYKGELED-GTKIAV------KRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYSIE 694 (973)
Q Consensus 629 ~~~~lG~G~fg~Vy~~~~~~-g~~vav------K~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 694 (973)
..+.|| ||.||+|.+.. ..+||| |..+......+....|.+|..+++..+|||+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 345666 99999998764 367888 7776544444555678899999999999999999887653
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=78.93 E-value=5 Score=39.69 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=75.5
Q ss_pred CCCceeeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHH-HHHhhccCCeeeccCCC
Q 041143 681 RHRHLVSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGME-YLHCLARQTFIHRDLKS 759 (973)
Q Consensus 681 ~h~niv~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~-~LH~~~~~~ivH~Dikp 759 (973)
.||++ -..+-.+++...+.|+.-+++.=...+ +..+...+++++..|+.-.. +++ .-+|--+.|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i--------~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P 112 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI--------RKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCP 112 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH--------HTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH--------HhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeC
Confidence 57887 344446677777777765444333333 34677889999998887666 544 457888999
Q ss_pred CcEEECCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCC
Q 041143 760 SNILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALD 833 (973)
Q Consensus 760 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~ 833 (973)
+||++|.++.+++.-.|+-.. ++|.- .+..-=.-.+=+++..++.++..|+
T Consensus 113 ~NL~f~~~~~p~i~hRGi~~~------------------lpP~e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 113 ENLMFNRALEPFFLHVGVKES------------------LPPDE-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp GGEEECTTCCEEESCCEETTT------------------BSSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred ceEEEeCCCcEEEEEcCCccc------------------CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999987775332 23321 1111113346778888888776653
No 450
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=78.92 E-value=3.4 Score=40.70 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=76.9
Q ss_pred CCCceeeeeeEEEeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhhccCCeeeccCCCC
Q 041143 681 RHRHLVSLLGYSIEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDVARGMEYLHCLARQTFIHRDLKSS 760 (973)
Q Consensus 681 ~h~niv~l~~~~~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~ia~gl~~LH~~~~~~ivH~Dikp~ 760 (973)
.||++++. .+-.+++...+.|+.-+. ...|- ..+..+...+++++..|+.-..+++ .=+|--+.|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~--~~~f~------~ik~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~ 108 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDN--HTPFD------NIKSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPD 108 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTT--SEEGG------GGGGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcc--cCCHH------HHHhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecc
Confidence 58888876 455666666666664332 22111 1245788899999999998776665 3478889999
Q ss_pred cEEECCCCCEEEeeccccccCCCCCcceecccccccCcccccccccCcCCCchhHHhHHHHHHHHHhCCCCCC
Q 041143 761 NILLDDDYRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLAALD 833 (973)
Q Consensus 761 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvvl~elltg~~p~~ 833 (973)
||+++.++.+++.-.|+-... +|. .++...=.-.+=+++..+++++..|+
T Consensus 109 NL~f~~~~~p~i~~RGik~~l------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 109 ELFFTRDGLPIAKTRGLQNVV------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp GEEECTTSCEEESCCEETTTB------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred eEEEcCCCCEEEEEccCccCC------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999877764322 121 11222223357788888999877764
No 451
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=75.33 E-value=1.2 Score=30.99 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.7
Q ss_pred HHHhhheeeee
Q 041143 539 VILLCIYCCKK 549 (973)
Q Consensus 539 ~~~l~~~~~~~ 549 (973)
+++++++++||
T Consensus 29 iv~~~~~~~rR 39 (41)
T 2k9y_A 29 LAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHSSSSS
T ss_pred HHHHheeEeee
Confidence 33444444444
No 452
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=74.87 E-value=1.2 Score=30.39 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=6.7
Q ss_pred ceeeehHHHHHHH
Q 041143 522 KLLVVVGISVVVT 534 (973)
Q Consensus 522 ~~~iiv~i~v~~~ 534 (973)
....|++++++++
T Consensus 9 s~GaIAGiVvG~v 21 (38)
T 2k1k_A 9 TGGEIVAVIFGLL 21 (38)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCCceeeeehHHH
Confidence 3445566655443
No 453
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=61.29 E-value=4.6 Score=30.70 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=7.5
Q ss_pred eehHHHHHHHHHHHHHHh
Q 041143 525 VVVGISVVVTVVLVVILL 542 (973)
Q Consensus 525 iiv~i~v~~~vi~v~~~l 542 (973)
+|+|.+++.++++.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444444433344
No 454
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.20 E-value=8.5 Score=27.09 Aligned_cols=13 Identities=15% Similarity=-0.179 Sum_probs=5.3
Q ss_pred HHHHHhhheeeee
Q 041143 537 LVVILLCIYCCKK 549 (973)
Q Consensus 537 ~v~~~l~~~~~~~ 549 (973)
+++++++-..+.+
T Consensus 29 ~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 29 LGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHhhhhHhh
Confidence 3333444444433
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.15 E-value=19 Score=30.57 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=15.5
Q ss_pred CCCCCccceeeccCCCCCCCCccccCCCCCccEEEcc
Q 041143 110 FSGLSELEFAYLDFNEFDTIPSDFFDGLSSVRVLALD 146 (973)
Q Consensus 110 ~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~Ls 146 (973)
|.++++|+.+.|-. .++.|...+|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 44444444444432 2344444444444444444443
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.56 E-value=31 Score=29.22 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=38.7
Q ss_pred CCCCCCCCccccCCCCCccEEEcccCCCCCccCCCCCcccccccccCeeeccccc
Q 041143 123 FNEFDTIPSDFFDGLSSVRVLALDYNPFNKTFGWSIPDSLANSVQLTNLSLINCN 177 (973)
Q Consensus 123 ~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~~~~~~ip~~~~~l~~L~~L~L~~N~ 177 (973)
+..++.|...+|.++.+|+.+.|-.+ ++.+ -...|.++.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~I----g~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLL----YDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCC----CTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheE----cHHHHhccCCccEEEEcCCC
Confidence 45678888999999999999999876 3432 23578889999999887654
No 457
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=45.35 E-value=89 Score=32.85 Aligned_cols=135 Identities=14% Similarity=0.129 Sum_probs=70.8
Q ss_pred CcccccCccEEEEEEECCCCEEEEEEeecCCCChHHHHHHHHHHHHHHhcCCCceeeeeeEE------------------
Q 041143 631 NELGRGGFGTVYKGELEDGTKIAVKRMEAGVTTTKALDEFQSEIAVLSKVRHRHLVSLLGYS------------------ 692 (973)
Q Consensus 631 ~~lG~G~fg~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~------------------ 692 (973)
+..-.|. +.||.+.. ++..|.||-. .....+.+..++...-.+.-|+..-+. +.
T Consensus 75 ~~s~~Gs-tgvff~~t-d~~~~VVK~s-----~~l~~E~l~s~LA~~LGlpiP~~Riv~-~~~~E~~e~~~~L~~~~~~~ 146 (342)
T 1cja_A 75 ERSEKGT-EGLFFVET-ESGVFIVKRS-----TNIESETFCSLLCMRLGLHAPKVRVVS-SNSEEGTNMLECLAAIDKSF 146 (342)
T ss_dssp EECCSTT-SCEEEEEE-SSCEEEEECC-----TTHHHHHHHHHHHHHHTCCCCCEEEEE-SSSHHHHHHHHHHHHHCSSS
T ss_pred EeccCCC-CCeEEEEe-CCCEEEEeCc-----HHHHHHHHHHHHHHHhCCCCCCeeEEe-eCcHHHHHHHHHHHHhhhhh
Confidence 3444454 55666655 4778888843 233455666666666666766633222 11
Q ss_pred -----EeCCeEEEEEEecCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHH--HHHHHHHHh-hccCCeee-ccCCCCcEE
Q 041143 693 -----IEGNERLLVYEYMPHGALSRHLFRWEKLQLKPLSWTRRLSIALDV--ARGMEYLHC-LARQTFIH-RDLKSSNIL 763 (973)
Q Consensus 693 -----~~~~~~~lV~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~~i--a~gl~~LH~-~~~~~ivH-~Dikp~Nil 763 (973)
......+++|||++|..|.+.-+.... ..+.. +.+.++ +-++.++.. ..+-+.+. .--.+.|||
T Consensus 147 ~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~---~~f~~----~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL 219 (342)
T 1cja_A 147 RVITTLANQANILLMELVRGITLNKLTTTSAP---EVLTK----STMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIM 219 (342)
T ss_dssp CHHHHHTTCSEEEEEECCCEEESTTCCSSSHH---HHSCH----HHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEE
T ss_pred HHHHHhhcccceehhhhcCCCccccchhhhhh---hhcCH----HHHHhhchhheehhhhcCCccCcccccCCCChhheE
Confidence 011246799999987665432111000 01111 222222 234455542 22222222 125789999
Q ss_pred ECCCCC-EEEeecccccc
Q 041143 764 LDDDYR-AKVSDFGLVKL 780 (973)
Q Consensus 764 l~~~~~-~kl~DfGla~~ 780 (973)
+++++. +.++|-+.+..
T Consensus 220 ~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 220 LSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EESBTTCEEECSCCCCCC
T ss_pred EeCCCCeEEEEcCCcccc
Confidence 987554 88999988854
No 458
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.84 E-value=19 Score=25.31 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=6.0
Q ss_pred HHHHHhhheeeeec
Q 041143 537 LVVILLCIYCCKKR 550 (973)
Q Consensus 537 ~v~~~l~~~~~~~r 550 (973)
+++.+++-..++++
T Consensus 28 ~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 28 LTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHTTCSSC
T ss_pred HHHHHHhhhhhhhh
Confidence 33344444444433
No 459
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=36.31 E-value=2.1e+02 Score=32.77 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=49.5
Q ss_pred eeeeEEEeCCeEEEEEEecCCCCHHHHH----------HhhhhccCC--CCCHHHHHHHHHHHHH--HHHHHHhhccCCe
Q 041143 687 SLLGYSIEGNERLLVYEYMPHGALSRHL----------FRWEKLQLK--PLSWTRRLSIALDVAR--GMEYLHCLARQTF 752 (973)
Q Consensus 687 ~l~~~~~~~~~~~lV~e~~~~g~L~~~l----------~~~~~~~~~--~l~~~~~~~i~~~ia~--gl~~LH~~~~~~i 752 (973)
+.|.+...+... =+.|++++.++.+.+ .+....... ...|..+..++..+|- -+.|+= ||
T Consensus 403 ~~Y~Vipls~~~-GlIE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL-----Gi 476 (614)
T 3ls8_A 403 TPYKVLATSTKH-GFMQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL-----GV 476 (614)
T ss_dssp CCCCEEESSSSE-EEEECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH-----TC
T ss_pred eccEEEEecCCC-ceEEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee-----ec
Confidence 344444443333 346777765555444 332111111 1235555566665543 345553 22
Q ss_pred eeccCCCCcEEECCCCCEEEeeccccc
Q 041143 753 IHRDLKSSNILLDDDYRAKVSDFGLVK 779 (973)
Q Consensus 753 vH~Dikp~Nill~~~~~~kl~DfGla~ 779 (973)
+|=.++|||++.+|++.=+|||.+-
T Consensus 477 --gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 477 --GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp --CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred --cCCCCcceeEcCCCCEeeeehHHhh
Confidence 6889999999999999999999874
No 460
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=28.43 E-value=28 Score=22.81 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=11.5
Q ss_pred eeehHHHHHHHHHHHHHHhhheee
Q 041143 524 LVVVGISVVVTVVLVVILLCIYCC 547 (973)
Q Consensus 524 ~iiv~i~v~~~vi~v~~~l~~~~~ 547 (973)
+.++|++++-++..+++.+.+|+.
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEeEeHHHHHHHHHHHHHHhhe
Confidence 345666655444444444444443
No 461
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=24.83 E-value=25 Score=25.83 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=2.6
Q ss_pred eeehHHH
Q 041143 524 LVVVGIS 530 (973)
Q Consensus 524 ~iiv~i~ 530 (973)
++++++.
T Consensus 11 iIi~svl 17 (54)
T 2l8s_A 11 VILLSAF 17 (54)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 462
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=20.87 E-value=64 Score=24.61 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhheee
Q 041143 532 VVTVVLVVILLCIYCC 547 (973)
Q Consensus 532 ~~~vi~v~~~l~~~~~ 547 (973)
+++.+++++.+|++|+
T Consensus 16 g~~~lll~~glcI~cc 31 (70)
T 2klu_A 16 GVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3455667778899954
Done!