BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041144
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 69 KGLSREESLQLGSYNALLNNSMEETFKSSHDAFRSAFPRGF 109
KG E+ Q N + +S+ +TF S H+ FRS+ RG
Sbjct: 216 KGPDVPETNQQCPSNTGMTDSVRDTFLSVHNEFRSSVARGL 256
>pdb|3PJB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
pdb|3PJB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
Length = 229
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 76 DFFKQSFPEGFTWERITTY 94
>pdb|3PIB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|C Chain C, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|D Chain D, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
Length = 236
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 83 DFFKQSFPEGFTWERITTY 101
>pdb|4EDS|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
pdb|4EDS|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
Length = 241
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 88 DFFKQSFPEGFTWERITTY 106
>pdb|3PJ7|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|C Chain C, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|D Chain D, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
Length = 229
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 76 DFFKQSFPEGFTWERITTY 94
>pdb|3PJ5|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
pdb|3PJ5|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
Length = 224
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 77 DFFKQSFPEGFTWERITTY 95
>pdb|4EDO|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
pdb|4EDO|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
Length = 241
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE I+ Y
Sbjct: 88 DFFKQSFPEGFTWERITTY 106
>pdb|2IB5|A Chain A, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|B Chain B, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|C Chain C, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|D Chain D, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|E Chain E, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|F Chain F, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|G Chain G, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|H Chain H, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|A Chain A, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|B Chain B, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|C Chain C, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|D Chain D, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|E Chain E, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|F Chain F, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|G Chain G, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|H Chain H, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
Length = 233
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++Y
Sbjct: 79 DYFKQSFPEGFTWERTTIY 97
>pdb|3T6H|A Chain A, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|B Chain B, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|C Chain C, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|D Chain D, 2.2 Angstrom Crystal Structure Of Tagrfp-T
Length = 238
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 76 DFFKQSFPEGFTWERVTTY 94
>pdb|3M24|A Chain A, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|B Chain B, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|C Chain C, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|D Chain D, Crystal Structure Of Tagbfp Fluorescent Protein
Length = 232
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 77 DFFKQSFPEGFTWERVTTY 95
>pdb|3M22|A Chain A, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|B Chain B, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|C Chain C, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|D Chain D, Crystal Structure Of Tagrfp Fluorescent Protein
Length = 235
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3IP2|A Chain A, Crystal Structure Of Red Fluorescent Protein Neptune At Ph
7.0
Length = 242
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3RWT|A Chain A, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|B Chain B, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|C Chain C, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|D Chain D, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|E Chain E, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|F Chain F, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|G Chain G, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|H Chain H, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
Length = 235
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 162 DFFKQSFPEGFTWERVTTY 180
>pdb|3RWA|A Chain A, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|B Chain B, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|C Chain C, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|D Chain D, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|E Chain E, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|F Chain F, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|G Chain G, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|H Chain H, Crystal Structure Of Circular-Permutated Mkate
Length = 233
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 146 DFFKQSFPEGFTWERVTTY 164
>pdb|3NT9|A Chain A, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|B Chain B, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|C Chain C, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|D Chain D, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
Length = 243
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3BX9|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BX9|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BXA|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXA|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXB|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXC|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
Length = 243
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3NT3|A Chain A, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|B Chain B, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|C Chain C, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|D Chain D, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
Length = 243
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3SVU|A Chain A, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|B Chain B, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|C Chain C, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|D Chain D, Crystal Structure Of Mkate Mutant S143c
Length = 233
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3SVO|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVR|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVS|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|E Chain E, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|F Chain F, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|G Chain G, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|H Chain H, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
Length = 233
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3SVN|A Chain A, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|B Chain B, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|C Chain C, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|D Chain D, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
Length = 233
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 81 SYNALLNNSMEETF----KSSHDAFRSAFPRGFAWELISVY 117
+++ L + TF K D F+ +FP GF WE ++ Y
Sbjct: 205 AFDILATSXXSRTFIKYPKGIPDFFKQSFPEGFTWERVTRY 245
>pdb|3E5W|A Chain A, Crystal Structure Analysis Of Fp611
pdb|3E5W|B Chain B, Crystal Structure Analysis Of Fp611
pdb|3E5W|C Chain C, Crystal Structure Analysis Of Fp611
pdb|3E5W|D Chain D, Crystal Structure Analysis Of Fp611
Length = 242
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 81 SYNALLNNSMEETF----KSSHDAFRSAFPRGFAWELISVY 117
+++ L + +TF K D F+ +FP GF WE ++ Y
Sbjct: 67 AFDILATSFXSKTFIKHTKGIPDFFKQSFPEGFTWERVTRY 107
>pdb|1UIS|A Chain A, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
pdb|1UIS|B Chain B, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
Length = 231
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 81 SYNALLNNSMEETF----KSSHDAFRSAFPRGFAWELISVY 117
+++ L + +TF K D F+ +FP GF WE ++ Y
Sbjct: 56 AFDILATSFXSKTFIKHTKGIPDFFKQSFPEGFTWERVTRY 96
>pdb|3E5V|A Chain A, Crystal Structure Analysis Of Eqfp611 Double Mutant T122r,
N143s
Length = 242
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 81 SYNALLNNSMEETF----KSSHDAFRSAFPRGFAWELISVY 117
+++ L + +TF K D F+ +FP GF WE ++ Y
Sbjct: 67 AFDILATSFXSKTFIKHTKGIPDFFKQSFPEGFTWERVTRY 107
>pdb|3E5T|A Chain A, Crystal Structure Analysis Of Fp611
Length = 242
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 81 SYNALLNNSMEETF----KSSHDAFRSAFPRGFAWELISVY 117
+++ L + +TF K D F+ +FP GF WE ++ Y
Sbjct: 67 AFDILATSFXSKTFIKHTKGIPDFFKQSFPEGFTWERVTRY 107
>pdb|2C9I|A Chain A, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|B Chain B, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|C Chain C, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|D Chain D, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|E Chain E, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|F Chain F, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|G Chain G, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|H Chain H, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
Length = 226
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ + P GF+WE +S Y
Sbjct: 76 DFFKQSLPGGFSWERVSTY 94
>pdb|3U0L|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 4.5
pdb|3U0M|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 8.5
pdb|3U0N|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 2
Length = 230
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE ++ Y
Sbjct: 81 DFFKQSFPEGFTWERVTRY 99
>pdb|1XMZ|A Chain A, Crystal Structure Of The Dark State Of Kindling
Fluorescent Protein Kfp From Anemonia Sulcata
pdb|1XMZ|B Chain B, Crystal Structure Of The Dark State Of Kindling
Fluorescent Protein Kfp From Anemonia Sulcata
Length = 241
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 87 DYFKQSFPEGFTWERTTTY 105
>pdb|1XQM|A Chain A, Variations On The Gfp Chromophore Scaffold: A Fragmented
5-Membered Heterocycle Revealed In The 2.1a Crystal
Structure Of A Non- Fluorescent Chromoprotein
Length = 230
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 76 DYFKQSFPEGFTWERTTTY 94
>pdb|3CFA|A Chain A, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|B Chain B, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|G Chain G, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|H Chain H, Anemonia Sulcata Red Fluorescent Protein Asrfp
Length = 167
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 14 DYFKQSFPEGFTWERTTTY 32
>pdb|3CFF|A Chain A, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|B Chain B, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|G Chain G, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|H Chain H, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFH|A Chain A, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|B Chain B, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|G Chain G, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|H Chain H, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
Length = 167
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 14 DYFKQSFPEGFTWERTTTY 32
>pdb|2A53|B Chain B, Fluorescent Protein Asfp595, A143s, Off-state
pdb|2A53|D Chain D, Fluorescent Protein Asfp595, A143s, Off-state
pdb|2A54|B Chain B, Fluorescent Protein Asfp595, A143s, On-state, 1min
Irradiation
pdb|2A54|D Chain D, Fluorescent Protein Asfp595, A143s, On-state, 1min
Irradiation
pdb|2A56|B Chain B, Fluorescent Protein Asfp595, A143s, On-State, 5min
Irradiation
pdb|2A56|D Chain D, Fluorescent Protein Asfp595, A143s, On-State, 5min
Irradiation
Length = 168
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 14 DYFKQSFPEGFTWERTTTY 32
>pdb|2A50|B Chain B, Fluorescent Protein Asfp595, Wt, Off-State
pdb|2A50|D Chain D, Fluorescent Protein Asfp595, Wt, Off-State
Length = 168
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 14 DYFKQSFPEGFTWERTTTY 32
>pdb|2A52|B Chain B, Fluorescent Protein Asfp595, S158v, On-State
pdb|2A52|D Chain D, Fluorescent Protein Asfp595, S158v, On-State
Length = 168
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 99 DAFRSAFPRGFAWELISVY 117
D F+ +FP GF WE + Y
Sbjct: 14 DYFKQSFPEGFTWERTTTY 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,622,460
Number of Sequences: 62578
Number of extensions: 278893
Number of successful extensions: 796
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 46
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)