BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041144
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P16273|PRPX_HORVU Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2
          Length = 235

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 20/192 (10%)

Query: 1   WRHSGPPIFDKVNKLFEEGRTKEWPKGSIEETVQNAVKSWEMELSHKTSLNDFKTINPEK 60
           WRH  PP +D VNKLFEE RTKEW +GS+EE VQ  +K+WEME+ HK    D K++N + 
Sbjct: 25  WRHGAPPNYDLVNKLFEEERTKEWAEGSVEEKVQRLLKTWEMEMVHKVRPEDQKSVNLKN 84

Query: 61  FKLIVNGRKGLSREESLQLGSYNALLNNSM----------EETFKSSHDAFRSAFPRGFA 110
           +    NG K L+REE + +G YNA L  ++           E+ +S+   F +AFPRGFA
Sbjct: 85  YSASTNGLKPLTREEVMAMGGYNAFLATTLPPEHRIYDPEAESVESATSTFLTAFPRGFA 144

Query: 111 WELISVYSGP--PMVAYKFKHWGYFEGPFQGHAPTGEMVEFLW--------DWDYEDVEI 160
            E++ VYS P  P +A+KF+HWGY EGPF+GH P G  VEF          D   E  E 
Sbjct: 145 IEVLDVYSSPSAPRIAFKFRHWGYMEGPFKGHPPHGGRVEFFGVCVFHVDEDTKVEKAEF 204

Query: 161 YYHPAELFAGLF 172
           +Y      A   
Sbjct: 205 FYERGNFLASFL 216


>sp|P20742|PZP_HUMAN Pregnancy zone protein OS=Homo sapiens GN=PZP PE=1 SV=4
          Length = 1482

 Score = 31.2 bits (69), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 78  QLGSYNAL-LNNSMEETFKSSHDAFRSAFPRGFAWELISVYS 118
           QLG+YN + LNN  E++     +  RS FP  + WEL++V S
Sbjct: 715 QLGTYNVIPLNN--EQSSGPVPETVRSYFPETWIWELVAVNS 754


>sp|G3KIM4|LCDA_CLOPR Lactoyl-CoA dehydratase subunit alpha (Fragment) OS=Clostridium
           propionicum GN=lcdA PE=1 SV=1
          Length = 422

 Score = 30.4 bits (67), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 21/143 (14%)

Query: 19  GRTKEWPK-GSIEETVQNAVKSW----EMELSHKTSLNDFKTINPEKFKLIVNGRKGLSR 73
           GR  +W K   +++  Q +V  W    EM     + LN F   N     LIV  R     
Sbjct: 188 GRPFDWKKFKEVKDQTQRSVYHWNRIAEMAKYKPSPLNGFDLFN--YMALIVACRSLDYA 245

Query: 74  EESLQLGSYNALLNNSMEETFKSSHDAFRSAFPRGFAWELISVYSGPPMVAYKFKHWGYF 133
           E + +         + +EE  K+   AF+ A    F WE I+V+   P + + FK     
Sbjct: 246 EITFKA------FADELEENLKAGIYAFKGAEKTRFQWEGIAVW---PHLGHTFKSMKNL 296

Query: 134 EGPFQGHAPTGEMVEFLWDWDYE 156
                G A        LWD  Y+
Sbjct: 297 NSIMTGTAYPA-----LWDLHYD 314


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,260,901
Number of Sequences: 539616
Number of extensions: 3254684
Number of successful extensions: 7651
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7647
Number of HSP's gapped (non-prelim): 7
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)